RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] (388 letters) >3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli k-12} (A:) Length = 265 Score = 65.0 bits (157), Expect = 1e-11 Identities = 28/261 (10%), Positives = 55/261 (21%), Gaps = 34/261 (13%) Query: 4 HAFLSASSSHRWLKCPIAPTLES--KIPQTTSIYASEGTFAHNLLAHC------------ 49 +S S P + T + GT H + Sbjct: 10 GPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPE 69 Query: 50 ---LEQGVDAETVSHQKLTFENDTRIVDTEMASSVS---MVLAYVRTFSGPFLSETEVPL 103 E + ++ E + + + S Sbjct: 70 FNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAES 129 Query: 104 EPFTT--EPGATGTADILIFNSTQWIIVDFKYGAGVP------VKAENNTQLMLYACGAL 155 + E G I+D K A + + Q Y+ G Sbjct: 130 SIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYE 189 Query: 156 HQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRA 215 Q+G +P + L P+ +++ + L +E+ L Sbjct: 190 AQFGV---QPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHR--NLRTLSDCLNT 244 Query: 216 VSLEHYGVNDDSCRFCRAKVR 236 R+ + Sbjct: 245 DEWPAI-KTLSLPRWAKEYAN 264 >3l0a_A Putative exonuclease; RER070207002219, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: PE4; 2.19A {Eubacterium rectale} (A:) Length = 266 Score = 46.0 bits (108), Expect = 9e-06 Identities = 31/255 (12%), Positives = 59/255 (23%), Gaps = 44/255 (17%) Query: 8 SASSSHRWLKCPIAPT--------LESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETV 59 S S + L + S G++ + L+Q Sbjct: 20 SVSGYKDFAGTYGKXPCEFYGXEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKD--- 76 Query: 60 SHQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGA--TGTAD 117 + ++ + + + A ++ R + + GA D Sbjct: 77 -NPEIFTQKGELKANFKQA--EEIIARIERDEYFXKYXSGQKQVIXTGELFGAKWKIKXD 133 Query: 118 ILIFNSTQWIIVDFKYGAGVPVKAENNT--------------QLMLYACGALHQYGDIFG 163 I IVD K A + Q +Y G+ Sbjct: 134 SYIPG---VAIVDLKVXASITDLKWVKDIGYLDFVRYWGYDIQGAVYQEIVRQNTGEKLP 190 Query: 164 RPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGV 223 A +P +R + ++ A +E + R + E Sbjct: 191 FFIAGATKQTEPDIRIIHVTDNYLQEALHXVEXNXP-----------RILRVKNGEVEPD 239 Query: 224 NDDSCRFCRAKVRCP 238 + C CR Sbjct: 240 RCELCDCCRHNRVLK 254 >1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:1-49,A:92-251) Length = 209 Score = 30.7 bits (69), Expect = 0.35 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Query: 301 KGNRSFKDI--NRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQEL 355 KG +S + N EL + E+ +L+ K+ E S+E E+ + Sbjct: 142 KGVKSVRARVTNIINELPKKITVEKFRDLLLEYXKKEYPEXTEYVFSEEELAEINRI 198 >1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} (B:1-52,B:271-319) Length = 101 Score = 29.9 bits (68), Expect = 0.54 Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 2/33 (6%) Query: 333 KELEQLYKEQKVSDEFWEELQELITR--GDGKP 363 +LE+ + + EF + +L+ G+ Sbjct: 25 NQLEEAFVSAQKDPEFQAQFADLLKNYAKHGRV 57 >1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8} (A:1-75,A:286-344) Length = 134 Score = 30.0 bits (68), Expect = 0.55 Identities = 10/23 (43%), Positives = 12/23 (52%) Query: 333 KELEQLYKEQKVSDEFWEELQEL 355 +ELE Y+E K F EEL Sbjct: 47 EELEAAYREAKKDPAFLEELDHY 69 >2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* (A:227-314,A:406-608) Length = 291 Score = 28.9 bits (65), Expect = 1.1 Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 11/59 (18%) Query: 311 RAQELLTSVLGEEAFKRILKTPKE--------LEQLYKEQ---KVSDEFWEELQELITR 358 + +L L + ++ K L + Y E + + EL+ L R Sbjct: 229 KEGDLDLGGLPGVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRDVMAELEGLEER 287 >3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* (A:) Length = 312 Score = 28.3 bits (62), Expect = 1.8 Identities = 2/25 (8%), Positives = 7/25 (28%) Query: 334 ELEQLYKEQKVSDEFWEELQELITR 358 + + + E ++ I Sbjct: 11 SSGLVPRGSHMDAETVGRVKRFIQE 35 >3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase, target 9265M, PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A* (A:150-404) Length = 255 Score = 28.2 bits (62), Expect = 1.8 Identities = 3/41 (7%), Positives = 8/41 (19%) Query: 176 RVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAV 216 VR D + + + + + Sbjct: 4 AVRDELQFYATGARPDLAQKXGFIGGKXPLHHGPSEGEEGL 44 >3h8t_A HMUY; hemophore, bacterial virulence factor, heme-binding protein, periodontitis; HET: HEM; 1.80A {Porphyromonas gingivalis} (A:) Length = 191 Score = 28.1 bits (62), Expect = 2.1 Identities = 13/44 (29%), Positives = 14/44 (31%), Gaps = 1/44 (2%) Query: 102 PLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNT 145 P +P T E T T I W F G V V N Sbjct: 3 PNQPSTPEAV-TKTVTIDASKYETWQYFSFSKGEVVNVTDYKND 45 >1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} (A:1-78,A:188-374) Length = 265 Score = 27.8 bits (61), Expect = 2.6 Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 334 ELEQLYKEQKVSDEFWEELQELITRGDGKP 363 ELE+ YK K +EF +L + G+P Sbjct: 21 ELEKAYKRFKDDEEFNRQLNYYLKTWAGRP 50 >2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function; NMR {Thermoplasma acidophilum} (A:) Length = 146 Score = 27.6 bits (61), Expect = 2.8 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Query: 282 FKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKE 341 F+ +N DE Q + G + F D++ + L + + RIL K+L +L+ E Sbjct: 31 FQTINGLDE-SLVQALAGVTAS-DFPDLDIKYNIFLVDLYGQKYFRILFQSKKLSELHPE 88 Query: 342 --QKVSDEF 348 +KV ++F Sbjct: 89 ERKKVREKF 97 >2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP, structural genomics; HET: ATP; 2.50A {Thermococcus kodakarensis KOD1} (A:1-70,A:279-320) Length = 112 Score = 27.3 bits (61), Expect = 3.3 Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%) Query: 322 EEAFKRILKTPKELEQLYKEQKVSDEFW--EELQELI 356 +E FK L + Y + D+ EE ++ Sbjct: 22 KEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEXTSIL 58 >1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1, phosphorylation; NMR {Arabidopsis thaliana} (A:) Length = 139 Score = 27.2 bits (60), Expect = 3.7 Identities = 3/40 (7%), Positives = 13/40 (32%) Query: 304 RSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQK 343 S + + L+ + ++ + ++ +K Sbjct: 3 SSHHHHHHSSGLVPRGSHMASRDQVKASHILIKHQGSRRK 42 >2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiative; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A (A:162-415) Length = 254 Score = 27.1 bits (59), Expect = 4.0 Identities = 5/44 (11%), Positives = 8/44 (18%) Query: 176 RVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLE 219 VR D E + T + + Sbjct: 4 AVRDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKD 47 >2fur_A Hypothetical protein; 10640715, structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Thermoplasma acidophilum} (A:1-185) Length = 185 Score = 26.9 bits (59), Expect = 4.4 Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 7/46 (15%) Query: 329 LKTPKELEQLYKEQKVSD--EFWEELQE-----LITRGDGKPVIAP 367 ++ K+ Y E+ + L + G P P Sbjct: 4 VECIKDKVTRYPERASYSDEDLVAXLDRNFTCTVSFIDGGIPYAIP 49 >2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} (A:17-91,A:327-361) Length = 110 Score = 27.0 bits (60), Expect = 4.6 Identities = 10/29 (34%), Positives = 14/29 (48%) Query: 322 EEAFKRILKTPKELEQLYKEQKVSDEFWE 350 E F + T K + YK KV+D+F Sbjct: 22 LEGFSTVCITMKGRDVPYKRFKVADKFIY 50 >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (B:886-964,B:1014-1180) Length = 246 Score = 26.9 bits (59), Expect = 4.6 Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 15/124 (12%) Query: 36 ASEGTFAHNLLAHCLEQGVDAETVSHQKLT-FENDTRIVDTEMASSVSMVLAYVRTFSGP 94 AS GTF H+L + K E I + +AS + ++ S Sbjct: 64 ASPGTFLHSLFEDL--------DFARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAG 115 Query: 95 FLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGA 154 PLE G D++ + ++ ++D+K + Q M A Sbjct: 116 -----CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM-Q 169 Query: 155 LHQY 158 H+Y Sbjct: 170 AHRY 173 >2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} (C:89-149) Length = 61 Score = 26.5 bits (59), Expect = 5.3 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 8/48 (16%) Query: 323 EAFKRILK------TPKELEQLYKE--QKVSDEFWEELQELITRGDGK 362 E + K EL + +K+++E EEL + +G Sbjct: 1 EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQEDSNGC 48 >1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; 2.25A {Pyrococcus horikoshii OT3} PDB: 2how_A (A:128-356) Length = 229 Score = 26.8 bits (58), Expect = 5.4 Identities = 7/33 (21%), Positives = 19/33 (57%) Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359 R++K +E++ + +++D+ +EE+ G Sbjct: 2 RMIKDKEEVKMMEHASRIADKVFEEILTWDLIG 34 >1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo sapiens} (A:) Length = 314 Score = 26.4 bits (56), Expect = 5.8 Identities = 4/24 (16%), Positives = 10/24 (41%) Query: 332 PKELEQLYKEQKVSDEFWEELQEL 355 P +E+ ++E + E+ Sbjct: 2 PTTIEREFEELDTQRRWQPLYLEI 25 >1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.90A {Thermotoga maritima} (A:) Length = 262 Score = 26.6 bits (57), Expect = 6.0 Identities = 10/33 (30%), Positives = 18/33 (54%) Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359 +KTP E+E++ K K E++++I G Sbjct: 14 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPG 46 >2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} (A:) Length = 61 Score = 26.6 bits (59), Expect = 6.1 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%) Query: 326 KRILKTPKELEQLYKEQKVS-----DEFWE 350 R+L+ L QLYK+ VS +EFW Sbjct: 20 NRMLQEDPVLFQLYKDLVVSQVISAEEFWA 49 >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} (A:139-367) Length = 229 Score = 26.3 bits (57), Expect = 6.2 Identities = 5/36 (13%), Positives = 10/36 (27%) Query: 176 RVRTGSPINEWVISADDLLEKAKEFKERGTLALSLK 211 + I+ ++ + G A LK Sbjct: 4 GSGDRIGVYASGINPENPEDVVARKAAEGYRAFKLK 39 >2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor, antibacterial, hydrolase; HET: U12; 1.00A {Escherichia coli K12} (A:) Length = 263 Score = 26.6 bits (57), Expect = 6.3 Identities = 7/33 (21%), Positives = 19/33 (57%) Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359 +KTP+++E++ +++ E E ++ + G Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPG 34 >1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} (A:1-375,A:446-478) Length = 408 Score = 26.2 bits (56), Expect = 8.1 Identities = 4/57 (7%), Positives = 13/57 (22%) Query: 303 NRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRG 359 + + EE + + + + + + + I G Sbjct: 134 ECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPG 190 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.131 0.378 Gapped Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,801,609 Number of extensions: 121475 Number of successful extensions: 440 Number of sequences better than 10.0: 1 Number of HSP's gapped: 434 Number of HSP's successfully gapped: 47 Length of query: 388 Length of database: 4,956,049 Length adjustment: 90 Effective length of query: 298 Effective length of database: 1,913,599 Effective search space: 570252502 Effective search space used: 570252502 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.6 bits)