RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780124|ref|YP_003064537.1| hypothetical protein
CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62]
(388 letters)
>3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination,
hydrolase; 2.80A {Escherichia coli k-12} (A:)
Length = 265
Score = 65.0 bits (157), Expect = 1e-11
Identities = 28/261 (10%), Positives = 55/261 (21%), Gaps = 34/261 (13%)
Query: 4 HAFLSASSSHRWLKCPIAPTLES--KIPQTTSIYASEGTFAHNLLAHC------------ 49
+S S P + T + GT H +
Sbjct: 10 GPGISKSQLDDIADTPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLELEEFSNRFIVAPE 69
Query: 50 ---LEQGVDAETVSHQKLTFENDTRIVDTEMASSVS---MVLAYVRTFSGPFLSETEVPL 103
E + ++ E + + + S
Sbjct: 70 FNRRTNAGKEEEKAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAES 129
Query: 104 EPFTT--EPGATGTADILIFNSTQWIIVDFKYGAGVP------VKAENNTQLMLYACGAL 155
+ E G I+D K A + + Q Y+ G
Sbjct: 130 SIYWEDPETGILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYE 189
Query: 156 HQYGDIFGRPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRA 215
Q+G +P + L P+ +++ + L +E+ L
Sbjct: 190 AQFGV---QPTFVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHR--NLRTLSDCLNT 244
Query: 216 VSLEHYGVNDDSCRFCRAKVR 236
R+ +
Sbjct: 245 DEWPAI-KTLSLPRWAKEYAN 264
>3l0a_A Putative exonuclease; RER070207002219, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative, PSI-2; HET: PE4; 2.19A
{Eubacterium rectale} (A:)
Length = 266
Score = 46.0 bits (108), Expect = 9e-06
Identities = 31/255 (12%), Positives = 59/255 (23%), Gaps = 44/255 (17%)
Query: 8 SASSSHRWLKCPIAPT--------LESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETV 59
S S + L + S G++ + L+Q
Sbjct: 20 SVSGYKDFAGTYGKXPCEFYGXEKLNGRWEDEKSTALLVGSYVDSYFEGSLDQFKKD--- 76
Query: 60 SHQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGA--TGTAD 117
+ ++ + + + A ++ R + + GA D
Sbjct: 77 -NPEIFTQKGELKANFKQA--EEIIARIERDEYFXKYXSGQKQVIXTGELFGAKWKIKXD 133
Query: 118 ILIFNSTQWIIVDFKYGAGVPVKAENNT--------------QLMLYACGALHQYGDIFG 163
I IVD K A + Q +Y G+
Sbjct: 134 SYIPG---VAIVDLKVXASITDLKWVKDIGYLDFVRYWGYDIQGAVYQEIVRQNTGEKLP 190
Query: 164 RPEALTLTIIQPRVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGV 223
A +P +R + ++ A +E + R + E
Sbjct: 191 FFIAGATKQTEPDIRIIHVTDNYLQEALHXVEXNXP-----------RILRVKNGEVEPD 239
Query: 224 NDDSCRFCRAKVRCP 238
+ C CR
Sbjct: 240 RCELCDCCRHNRVLK 254
>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4}
(A:1-49,A:92-251)
Length = 209
Score = 30.7 bits (69), Expect = 0.35
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 301 KGNRSFKDI--NRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQEL 355
KG +S + N EL + E+ +L+ K+ E S+E E+ +
Sbjct: 142 KGVKSVRARVTNIINELPKKITVEKFRDLLLEYXKKEYPEXTEYVFSEEELAEINRI 198
>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase,
tryptophan biosynthesis, pyridoxal phosphate; HET: IPL
PLP; 1.4A {Salmonella typhimurium} (B:1-52,B:271-319)
Length = 101
Score = 29.9 bits (68), Expect = 0.54
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 333 KELEQLYKEQKVSDEFWEELQELITR--GDGKP 363
+LE+ + + EF + +L+ G+
Sbjct: 25 NQLEEAFVSAQKDPEFQAQFADLLKNYAKHGRV 57
>1x1q_A Tryptophan synthase beta chain; structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
2.50A {Thermus thermophilus HB8} (A:1-75,A:286-344)
Length = 134
Score = 30.0 bits (68), Expect = 0.55
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 333 KELEQLYKEQKVSDEFWEELQEL 355
+ELE Y+E K F EEL
Sbjct: 47 EELEAAYREAKKDPAFLEELDHY 69
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl
transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus}
PDB: 2fah_A* 2qzy_A* (A:227-314,A:406-608)
Length = 291
Score = 28.9 bits (65), Expect = 1.1
Identities = 10/59 (16%), Positives = 19/59 (32%), Gaps = 11/59 (18%)
Query: 311 RAQELLTSVLGEEAFKRILKTPKE--------LEQLYKEQ---KVSDEFWEELQELITR 358
+ +L L + ++ K L + Y E + + EL+ L R
Sbjct: 229 KEGDLDLGGLPGVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRDVMAELEGLEER 287
>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal
domain, orotidine 5'-monophosphate decarboxylase, human,
5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens}
PDB: 3bvj_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* (A:)
Length = 312
Score = 28.3 bits (62), Expect = 1.8
Identities = 2/25 (8%), Positives = 7/25 (28%)
Query: 334 ELEQLYKEQKVSDEFWEELQELITR 358
+ + + E ++ I
Sbjct: 11 SSGLVPRGSHMDAETVGRVKRFIQE 35
>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural
genomics, nysgrc, L-rhamnonate dehydratase, target
9265M, PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii
avop} PDB: 2oz3_A* (A:150-404)
Length = 255
Score = 28.2 bits (62), Expect = 1.8
Identities = 3/41 (7%), Positives = 8/41 (19%)
Query: 176 RVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAV 216
VR D + + + + +
Sbjct: 4 AVRDELQFYATGARPDLAQKXGFIGGKXPLHHGPSEGEEGL 44
>3h8t_A HMUY; hemophore, bacterial virulence factor, heme-binding
protein, periodontitis; HET: HEM; 1.80A {Porphyromonas
gingivalis} (A:)
Length = 191
Score = 28.1 bits (62), Expect = 2.1
Identities = 13/44 (29%), Positives = 14/44 (31%), Gaps = 1/44 (2%)
Query: 102 PLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNT 145
P +P T E T T I W F G V V N
Sbjct: 3 PNQPSTPEAV-TKTVTIDASKYETWQYFSFSKGEVVNVTDYKND 45
>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken
structural genomics/proteomics initiative, RSGI,
structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus
furiosus} (A:1-78,A:188-374)
Length = 265
Score = 27.8 bits (61), Expect = 2.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 334 ELEQLYKEQKVSDEFWEELQELITRGDGKP 363
ELE+ YK K +EF +L + G+P
Sbjct: 21 ELEKAYKRFKDDEEFNRQLNYYLKTWAGRP 50
>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown
function; NMR {Thermoplasma acidophilum} (A:)
Length = 146
Score = 27.6 bits (61), Expect = 2.8
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 282 FKRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKE 341
F+ +N DE Q + G + F D++ + L + + RIL K+L +L+ E
Sbjct: 31 FQTINGLDE-SLVQALAGVTAS-DFPDLDIKYNIFLVDLYGQKYFRILFQSKKLSELHPE 88
Query: 342 --QKVSDEF 348
+KV ++F
Sbjct: 89 ERKKVREKF 97
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP
binding protein, PURP, structural genomics; HET: ATP;
2.50A {Thermococcus kodakarensis KOD1}
(A:1-70,A:279-320)
Length = 112
Score = 27.3 bits (61), Expect = 3.3
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 322 EEAFKRILKTPKELEQLYKEQKVSDEFW--EELQELI 356
+E FK L + Y + D+ EE ++
Sbjct: 22 KEGFKTRLYVSPKRRPFYSSLPIVDDLVVAEEXTSIL 58
>1j6y_A Peptidyl-prolyl CIS-trans isomerase; parvulin, PIN1,
phosphorylation; NMR {Arabidopsis thaliana} (A:)
Length = 139
Score = 27.2 bits (60), Expect = 3.7
Identities = 3/40 (7%), Positives = 13/40 (32%)
Query: 304 RSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQK 343
S + + L+ + ++ + ++ +K
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASRDQVKASHILIKHQGSRRK 42
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI,
protein structure initiative; 1.80A {Salmonella
typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A
3d46_A 2i5q_A (A:162-415)
Length = 254
Score = 27.1 bits (59), Expect = 4.0
Identities = 5/44 (11%), Positives = 8/44 (18%)
Query: 176 RVRTGSPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLE 219
VR D E + T + +
Sbjct: 4 AVRDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKD 47
>2fur_A Hypothetical protein; 10640715, structural genomics, PSI,
protein structure initiative, joint center for
structural genomics, JCSG; HET: MSE; 1.80A {Thermoplasma
acidophilum} (A:1-185)
Length = 185
Score = 26.9 bits (59), Expect = 4.4
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 7/46 (15%)
Query: 329 LKTPKELEQLYKEQKVSD--EFWEELQE-----LITRGDGKPVIAP 367
++ K+ Y E+ + L + G P P
Sbjct: 4 VECIKDKVTRYPERASYSDEDLVAXLDRNFTCTVSFIDGGIPYAIP 49
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl
5'-monophosphate synthetase...; ATP-grAsp superfamily,
ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus
jannaschii} (A:17-91,A:327-361)
Length = 110
Score = 27.0 bits (60), Expect = 4.6
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 322 EEAFKRILKTPKELEQLYKEQKVSDEFWE 350
E F + T K + YK KV+D+F
Sbjct: 22 LEGFSTVCITMKGRDVPYKRFKVADKFIY 50
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination,
helicase, hydrolase, DNA repair; HET: DNA; 3.1A
{Escherichia coli} (B:886-964,B:1014-1180)
Length = 246
Score = 26.9 bits (59), Expect = 4.6
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 15/124 (12%)
Query: 36 ASEGTFAHNLLAHCLEQGVDAETVSHQKLT-FENDTRIVDTEMASSVSMVLAYVRTFSGP 94
AS GTF H+L + K E I + +AS + ++ S
Sbjct: 64 ASPGTFLHSLFEDL--------DFARNKQVEMEFYLPISEPLIASQLDTLIRQFDPLSAG 115
Query: 95 FLSETEVPLEPFTTEPGATGTADILIFNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGA 154
PLE G D++ + ++ ++D+K + Q M A
Sbjct: 116 -----CPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGEDSSAYTQQAMAAAM-Q 169
Query: 155 LHQY 158
H+Y
Sbjct: 170 AHRY 173
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A
{Gallus gallus} (C:89-149)
Length = 61
Score = 26.5 bits (59), Expect = 5.3
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 323 EAFKRILK------TPKELEQLYKE--QKVSDEFWEELQELITRGDGK 362
E + K EL + +K+++E EEL + +G
Sbjct: 1 EGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELMKGQEDSNGC 48
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics,
riken structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii OT3} PDB: 2how_A
(A:128-356)
Length = 229
Score = 26.8 bits (58), Expect = 5.4
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359
R++K +E++ + +++D+ +EE+ G
Sbjct: 2 RMIKDKEEVKMMEHASRIADKVFEEILTWDLIG 34
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} (A:)
Length = 314
Score = 26.4 bits (56), Expect = 5.8
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 332 PKELEQLYKEQKVSDEFWEELQEL 355
P +E+ ++E + E+
Sbjct: 2 PTTIEREFEELDTQRRWQPLYLEI 25
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics,
JCSG, PSI, protein structure initiative, joint center
for structural genomics; 1.90A {Thermotoga maritima}
(A:)
Length = 262
Score = 26.6 bits (57), Expect = 6.0
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359
+KTP E+E++ K K E++++I G
Sbjct: 14 IRIKTPSEIEKMKKAGKAVAVALREVRKVIVPG 46
>2dii_A TFIIH basal transcription factor complex P62 subunit;
BTF2-P62, general transcription factor IIH polypeptide
1, nuclear protein; NMR {Homo sapiens} (A:)
Length = 61
Score = 26.6 bits (59), Expect = 6.1
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 326 KRILKTPKELEQLYKEQKVS-----DEFWE 350
R+L+ L QLYK+ VS +EFW
Sbjct: 20 NRMLQEDPVLFQLYKDLVVSQVISAEEFWA 49
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme;
structural genomics, NYSGXRC, target 9284B, enolase
family, PSI-2; 2.60A {Bordetella bronchiseptica}
(A:139-367)
Length = 229
Score = 26.3 bits (57), Expect = 6.2
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 176 RVRTGSPINEWVISADDLLEKAKEFKERGTLALSLK 211
+ I+ ++ + G A LK
Sbjct: 4 GSGDRIGVYASGINPENPEDVVARKAAEGYRAFKLK 39
>2gg2_A Methionine aminopeptidase; PITA-bread fold, MAP inhibitor,
antibacterial, hydrolase; HET: U12; 1.00A {Escherichia
coli K12} (A:)
Length = 263
Score = 26.6 bits (57), Expect = 6.3
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 327 RILKTPKELEQLYKEQKVSDEFWEELQELITRG 359
+KTP+++E++ +++ E E ++ + G
Sbjct: 2 ISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPG 34
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4;
1.60A {Homo sapiens} (A:1-375,A:446-478)
Length = 408
Score = 26.2 bits (56), Expect = 8.1
Identities = 4/57 (7%), Positives = 13/57 (22%)
Query: 303 NRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRG 359
+ + EE + + + + + + + I G
Sbjct: 134 ECEYPPTQDGRTAAWRTTSEEKKALDQASEEIWNDFREAAEAHRQVRKYVMSWIKPG 190
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.316 0.131 0.378
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,801,609
Number of extensions: 121475
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 434
Number of HSP's successfully gapped: 47
Length of query: 388
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 298
Effective length of database: 1,913,599
Effective search space: 570252502
Effective search space used: 570252502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.6 bits)