BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] (388 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] Length = 388 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/388 (100%), Positives = 388/388 (100%) Query: 1 MAHHAFLSASSSHRWLKCPIAPTLESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVS 60 MAHHAFLSASSSHRWLKCPIAPTLESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVS Sbjct: 1 MAHHAFLSASSSHRWLKCPIAPTLESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVS 60 Query: 61 HQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILI 120 HQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILI Sbjct: 61 HQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILI 120 Query: 121 FNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTG 180 FNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTG Sbjct: 121 FNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTG 180 Query: 181 SPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPAL 240 SPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPAL Sbjct: 181 SPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPAL 240 Query: 241 SRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGR 300 SRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGR Sbjct: 241 SRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGR 300 Query: 301 KGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGD 360 KGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGD Sbjct: 301 KGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGD 360 Query: 361 GKPVIAPRDIPTNKQTQKSQLSEFEVLG 388 GKPVIAPRDIPTNKQTQKSQLSEFEVLG Sbjct: 361 GKPVIAPRDIPTNKQTQKSQLSEFEVLG 388 >gi|254781191|ref|YP_003065604.1| hypothetical protein CLIBASIA_05490 [Candidatus Liberibacter asiaticus str. psy62] Length = 165 Score = 136 bits (343), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 68/165 (41%), Positives = 110/165 (66%), Gaps = 2/165 (1%) Query: 223 VNDDSCRFCRAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMF 282 +++++CRFCRAK RC AL+ L ++ + +LS+ + + LI++++K ++E Sbjct: 1 MDENACRFCRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKGVKEEAL 60 Query: 283 KRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQ 342 L++G+++ Y+L EGRKG+R++ + N+ ++LL LG+EA+ R L +P E EQL K + Sbjct: 61 NVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK 120 Query: 343 KVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLSEFEVL 387 KVS+ WE+LQ+ ITR DGK VI P D+P N K+ +SEF VL Sbjct: 121 KVSETTWEQLQKFITRKDGKQVIVPCDLPVNH--LKANISEFSVL 163 >537021.9.peg.393_1 Length = 150 Score = 26.6 bits (57), Expect = 0.81, Method: Compositional matrix adjust. Identities = 13/24 (54%), Positives = 14/24 (58%) Query: 63 KLTFENDTRIVDTEMASSVSMVLA 86 K FEN RI D + A V MVLA Sbjct: 80 KSKFENGLRITDQQTAEVVEMVLA 103 >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%) Query: 306 FKDINRAQELLTSVLGEEAFKRILKTPK-----ELEQLYKEQKVSDEFWEEL 352 F +IN +QE LT++LG K ILKT + + +++Y E + + L Sbjct: 119 FYEIN-SQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASL 169 >gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Length = 410 Score = 25.0 bits (53), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Query: 313 QELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVI-----AP 367 QELL+S G + + + ELE Y + + WE L+ LI G P++ P Sbjct: 122 QELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLI--GHNGPILPQDLDKP 179 Query: 368 RDIP 371 R IP Sbjct: 180 RIIP 183 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.131 0.378 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 230,232 Number of Sequences: 1233 Number of extensions: 9032 Number of successful extensions: 21 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 6 length of query: 388 length of database: 328,796 effective HSP length: 76 effective length of query: 312 effective length of database: 235,088 effective search space: 73347456 effective search space used: 73347456 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)