BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780124|ref|YP_003064537.1| hypothetical protein
CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62]
         (388 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 388

 Score =  806 bits (2082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/388 (100%), Positives = 388/388 (100%)

Query: 1   MAHHAFLSASSSHRWLKCPIAPTLESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVS 60
           MAHHAFLSASSSHRWLKCPIAPTLESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVS
Sbjct: 1   MAHHAFLSASSSHRWLKCPIAPTLESKIPQTTSIYASEGTFAHNLLAHCLEQGVDAETVS 60

Query: 61  HQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILI 120
           HQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILI
Sbjct: 61  HQKLTFENDTRIVDTEMASSVSMVLAYVRTFSGPFLSETEVPLEPFTTEPGATGTADILI 120

Query: 121 FNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTG 180
           FNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTG
Sbjct: 121 FNSTQWIIVDFKYGAGVPVKAENNTQLMLYACGALHQYGDIFGRPEALTLTIIQPRVRTG 180

Query: 181 SPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPAL 240
           SPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPAL
Sbjct: 181 SPINEWVISADDLLEKAKEFKERGTLALSLKSKRAVSLEHYGVNDDSCRFCRAKVRCPAL 240

Query: 241 SRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGR 300
           SRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGR
Sbjct: 241 SRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMFKRLNAGDEIQGYQLVEGR 300

Query: 301 KGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGD 360
           KGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGD
Sbjct: 301 KGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGD 360

Query: 361 GKPVIAPRDIPTNKQTQKSQLSEFEVLG 388
           GKPVIAPRDIPTNKQTQKSQLSEFEVLG
Sbjct: 361 GKPVIAPRDIPTNKQTQKSQLSEFEVLG 388


>gi|254781191|ref|YP_003065604.1| hypothetical protein CLIBASIA_05490 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 165

 Score =  136 bits (343), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 110/165 (66%), Gaps = 2/165 (1%)

Query: 223 VNDDSCRFCRAKVRCPALSRHVLLEATKDPSTNTTVELSKAYSSISLIKSYVKACEDEMF 282
           +++++CRFCRAK RC AL+   L   ++     +  +LS+  + + LI++++K  ++E  
Sbjct: 1   MDENACRFCRAKPRCGALAVKALSTFSEHMQILSNRQLSQVMNVLPLIETWMKGVKEEAL 60

Query: 283 KRLNAGDEIQGYQLVEGRKGNRSFKDINRAQELLTSVLGEEAFKRILKTPKELEQLYKEQ 342
             L++G+++  Y+L EGRKG+R++ + N+ ++LL   LG+EA+ R L +P E EQL K +
Sbjct: 61  NVLSSGEDLPNYELKEGRKGSRTYNNDNQVEQLLMRELGDEAYNRTLLSPTETEQLVKRK 120

Query: 343 KVSDEFWEELQELITRGDGKPVIAPRDIPTNKQTQKSQLSEFEVL 387
           KVS+  WE+LQ+ ITR DGK VI P D+P N    K+ +SEF VL
Sbjct: 121 KVSETTWEQLQKFITRKDGKQVIVPCDLPVNH--LKANISEFSVL 163


>537021.9.peg.393_1 
          Length = 150

 Score = 26.6 bits (57), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 14/24 (58%)

Query: 63  KLTFENDTRIVDTEMASSVSMVLA 86
           K  FEN  RI D + A  V MVLA
Sbjct: 80  KSKFENGLRITDQQTAEVVEMVLA 103


>gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 354

 Score = 25.4 bits (54), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 6/52 (11%)

Query: 306 FKDINRAQELLTSVLGEEAFKRILKTPK-----ELEQLYKEQKVSDEFWEEL 352
           F +IN +QE LT++LG    K ILKT +     + +++Y E   +   +  L
Sbjct: 119 FYEIN-SQESLTNILGGFKGKGILKTRRLGYDGKGQKVYHENDCTQNLYASL 169


>gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 410

 Score = 25.0 bits (53), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 313 QELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVI-----AP 367
           QELL+S  G +   +  +   ELE  Y +    +  WE L+ LI  G   P++      P
Sbjct: 122 QELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLI--GHNGPILPQDLDKP 179

Query: 368 RDIP 371
           R IP
Sbjct: 180 RIIP 183


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.316    0.131    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,232
Number of Sequences: 1233
Number of extensions: 9032
Number of successful extensions: 21
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 6
length of query: 388
length of database: 328,796
effective HSP length: 76
effective length of query: 312
effective length of database: 235,088
effective search space: 73347456
effective search space used: 73347456
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)