HHsearch alignment for GI: 254780125 and conserved domain: pfam02498
>pfam02498 Bro-N BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.
Probab=99.80 E-value=2.3e-19 Score=152.38 Aligned_cols=86 Identities=44% Similarity=0.740 Sum_probs=74.8
Q ss_pred EEEEEEEECCEEEEEHHHHHHHHCCCCHHHHHHHHCCCCCEEE-----EECCCCCCCEEEEECHHHHHHHHHHCCCHHHH
Q ss_conf 7999994389086679999988289688999998456743288-----72279983106897187799999857996579
Q gi|254780125|r 13 KIRTIVDKDQNIWFVAKDVATALGYENSNEAINAHCKGVAKRY-----PLKTEGGIQKVRIISEPDVYRLLVKSTLPSAQ 87 (262)
Q Consensus 13 ~ir~v~~~dge~wF~a~dva~~LGy~~~~~ai~~~~~~~~~~~-----~~~~~g~~~~~~~i~E~gly~Li~~s~~p~A~ 87 (262)
T Consensus 1 ~ir~v~-~~~~~wf~a~dia~~Lgy~~~~~ai~~~v~~~~k~~~~~~~~~~~~~~~~~~~~I~e~Gly~Li~~s~~p~a~ 79 (91)
T pfam02498 1 EVRTVV-INGEPWFVAKDVAKALGYKNPKKAILKHVDDDNKKTLEELTNSIPSNGQQKTVFINESGLYELILRSRKPEAK 79 (91)
T ss_pred CEEEEE-ECCEEEEEHHHHHHHHCCCCHHHHHHHHCCHHHCEEEEEECCCCCCCCCCEEEEECHHHHHHHHHHCCCHHHH
T ss_conf 959999-9998868889999995899889999986798772776653345789987458998153899999974987479
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999988897899
Q gi|254780125|r 88 KFERWVFEEVLP 99 (262)
Q Consensus 88 ~F~~Wv~~eVLP 99 (262)
T Consensus 80 ~F~~Wv~~~vlp 91 (91)
T pfam02498 80 EFRKWVTEEVLP 91 (91)
T ss_pred HHHHHHHCCCCC
T ss_conf 999988636689