HHsearch alignment for GI: 254780125 and conserved domain: pfam02498

>pfam02498 Bro-N BRO family, N-terminal domain. This family includes the N-terminus of baculovirus BRO and ALI motif proteins. The function of BRO proteins is unknown. It has been suggested that BRO-A and BRO-C are DNA binding proteins that influence host DNA replication and/or transcription. This Pfam domain does not include the characteristic invariant alanine, leucine, isoleucine motif of the ALI proteins.
Probab=99.80  E-value=2.3e-19  Score=152.38  Aligned_cols=86  Identities=44%  Similarity=0.740  Sum_probs=74.8

Q ss_pred             EEEEEEEECCEEEEEHHHHHHHHCCCCHHHHHHHHCCCCCEEE-----EECCCCCCCEEEEECHHHHHHHHHHCCCHHHH
Q ss_conf             7999994389086679999988289688999998456743288-----72279983106897187799999857996579
Q gi|254780125|r   13 KIRTIVDKDQNIWFVAKDVATALGYENSNEAINAHCKGVAKRY-----PLKTEGGIQKVRIISEPDVYRLLVKSTLPSAQ   87 (262)
Q Consensus        13 ~ir~v~~~dge~wF~a~dva~~LGy~~~~~ai~~~~~~~~~~~-----~~~~~g~~~~~~~i~E~gly~Li~~s~~p~A~   87 (262)
T Consensus         1 ~ir~v~-~~~~~wf~a~dia~~Lgy~~~~~ai~~~v~~~~k~~~~~~~~~~~~~~~~~~~~I~e~Gly~Li~~s~~p~a~   79 (91)
T pfam02498         1 EVRTVV-INGEPWFVAKDVAKALGYKNPKKAILKHVDDDNKKTLEELTNSIPSNGQQKTVFINESGLYELILRSRKPEAK   79 (91)
T ss_pred             CEEEEE-ECCEEEEEHHHHHHHHCCCCHHHHHHHHCCHHHCEEEEEECCCCCCCCCCEEEEECHHHHHHHHHHCCCHHHH
T ss_conf             959999-9998868889999995899889999986798772776653345789987458998153899999974987479


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             999988897899
Q gi|254780125|r   88 KFERWVFEEVLP   99 (262)
Q Consensus        88 ~F~~Wv~~eVLP   99 (262)
T Consensus        80 ~F~~Wv~~~vlp   91 (91)
T pfam02498        80 EFRKWVTEEVLP   91 (91)
T ss_pred             HHHHHHHCCCCC
T ss_conf             999988636689