Query         gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 262
No_of_seqs    191 out of 1100
Neff          7.2 
Searched_HMMs 33803
Date          Sun May 22 22:37:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780125.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3hrs_A Metalloregulator SCAR;  94.5    0.13 3.8E-06   30.3   6.2   57  170-226    14-71  (138)
  2 >2h09_A Transcriptional regula  94.4     0.1   3E-06   31.0   5.6   56  171-226    49-105 (155)
  3 >2qq9_A Diphtheria toxin repre  94.3    0.13 3.9E-06   30.2   6.0   56  171-226    19-75  (146)
  4 >3b73_A PHIH1 repressor-like p  94.2    0.13 3.9E-06   30.3   5.8   65  160-224    11-78  (111)
  5 >1on2_A Transcriptional regula  93.3     0.2 5.9E-06   29.0   5.5   56  171-226    17-73  (142)
  6 >1fx7_A Iron-dependent repress  92.4    0.49 1.4E-05   26.3   6.4   56  171-226    19-75  (141)
  7 >2o0y_A Transcriptional regula  91.9    0.63 1.9E-05   25.5   6.5   61  166-226    28-89  (95)
  8 >1xmk_A Double-stranded RNA-sp  88.9    0.92 2.7E-05   24.4   5.2   52  170-222    19-75  (79)
  9 >1mkm_A ICLR transcriptional r  88.7     1.1 3.4E-05   23.8   5.5   50  166-215    13-63  (64)
 10 >3cta_A Riboflavin kinase; str  86.8     1.3 3.8E-05   23.5   4.8   64  163-226    14-81  (91)
 11 >2fxa_A Protease production re  84.9     1.7 5.1E-05   22.6   4.7   61  166-226     8-75  (81)
 12 >2bv6_A MGRA, HTH-type transcr  84.8     2.6 7.8E-05   21.3   6.6   59  165-223     8-73  (76)
 13 >2g7u_A Transcriptional regula  84.4     2.1 6.1E-05   22.0   5.0   52  166-218    19-71  (75)
 14 >2fbi_A Probable transcription  82.4     2.2 6.5E-05   21.9   4.4   57  168-224     8-71  (75)
 15 >3eyi_A Z-DNA-binding protein   82.4     1.3   4E-05   23.3   3.3   50  170-220    18-71  (72)
 16 >3cjn_A Transcriptional regula  82.2     3.4 9.9E-05   20.6   5.3   58  167-224    10-74  (78)
 17 >2pex_A Transcriptional regula  82.1     3.4   1E-04   20.6   5.4   55  167-221     9-70  (71)
 18 >1z91_A Organic hydroperoxide   81.2       2 5.9E-05   22.1   3.9   59  165-223    10-75  (78)
 19 >2ia2_A Putative transcription  81.2     2.9 8.7E-05   21.0   4.7   58  167-225    27-85  (86)
 20 >2fa5_A Transcriptional regula  81.0     3.4  0.0001   20.5   5.0   66  162-227    49-121 (134)
 21 >3ech_A MEXR, multidrug resist  81.0     3.7 0.00011   20.3   5.3   67  160-226    35-108 (122)
 22 >3cdh_A Transcriptional regula  80.3     3.9 0.00011   20.2   7.4   65  161-225    12-83  (103)
 23 >2eth_A Transcriptional regula  80.2     3.8 0.00011   20.2   5.0   66  161-226    43-115 (130)
 24 >3bdd_A Regulatory protein MAR  79.0     4.2 0.00013   19.9   5.2   56  168-223     8-70  (73)
 25 >1u78_A TC3 transposase, trans  78.1     2.9 8.6E-05   21.0   3.9   54  172-225    20-74  (88)
 26 >1ub9_A Hypothetical protein P  77.6     4.6 0.00014   19.7   4.8   60  165-226    19-87  (100)
 27 >1r1t_A Transcriptional repres  74.7     4.5 0.00013   19.7   4.1   45  173-217    12-57  (78)
 28 >2qww_A Transcriptional regula  74.6     5.5 0.00016   19.1   9.0   67  160-226    39-114 (131)
 29 >2fbk_A Transcriptional regula  74.1     5.7 0.00017   19.0   6.7   79  149-227    59-144 (157)
 30 >3g3z_A NMB1585, transcription  74.0     5.7 0.00017   19.0   5.5   59  168-226     8-73  (91)
 31 >2d1h_A ST1889, 109AA long hyp  73.9     5.1 0.00015   19.3   4.2   58  169-226    29-93  (109)
 32 >1lj9_A Transcriptional regula  73.2       6 0.00018   18.9   5.7   56  169-226     9-73  (87)
 33 >2zkz_A Transcriptional repres  72.1     3.4 9.9E-05   20.6   2.9   48  170-217    35-82  (99)
 34 >1qbj_A Protein (double-strand  71.9     6.4 0.00019   18.7   6.7   49  171-222    22-76  (81)
 35 >3k0l_A Repressor protein; hel  71.7     6.5 0.00019   18.6   9.3   67  160-226    44-117 (131)
 36 >1g4d_A Repressor protein C; p  70.9     5.1 0.00015   19.3   3.6   37  174-210     2-38  (69)
 37 >3cuo_A Uncharacterized HTH-ty  69.9       7 0.00021   18.4   5.1   53  169-221    22-78  (90)
 38 >2hr3_A Probable transcription  69.5     7.2 0.00021   18.3   6.5   58  169-226    14-78  (94)
 39 >3by6_A Predicted transcriptio  69.2     7.3 0.00022   18.3   4.5   52  172-223    30-83  (106)
 40 >3jw4_A Transcriptional regula  68.5     7.5 0.00022   18.2   5.9   54  173-226    28-88  (101)
 41 >1jgs_A Multiple antibiotic re  67.1       8 0.00024   18.0   7.8   65  162-226    34-105 (122)
 42 >1s3j_A YUSO protein; structur  66.7     8.1 0.00024   17.9   8.2   67  160-226    35-108 (122)
 43 >3e6m_A MARR family transcript  66.6     8.2 0.00024   17.9   7.3   67  160-226    51-124 (138)
 44 >3bpv_A Transcriptional regula  66.3     8.3 0.00025   17.9   8.2   67  160-226    27-100 (114)
 45 >2kko_A Possible transcription  65.1     6.7  0.0002   18.5   3.3   45  173-217    35-80  (82)
 46 >2vxz_A Pyrsv_GP04; viral prot  65.0     7.8 0.00023   18.1   3.6   45  173-217    21-66  (165)
 47 >1r1u_A CZRA, repressor protei  65.0     8.8 0.00026   17.7   3.9   43  174-216    37-80  (106)
 48 >3hsr_A HTH-type transcription  64.7     8.9 0.00026   17.7   9.2   67  160-226    34-107 (119)
 49 >2fsw_A PG_0823 protein; alpha  64.5       9 0.00026   17.7   5.9   55  172-227    34-97  (107)
 50 >1bia_A BIRA bifunctional prot  63.9     8.4 0.00025   17.9   3.6   44  168-211    11-55  (64)
 51 >3f6o_A Probable transcription  62.9     5.7 0.00017   19.0   2.6   45  173-217    28-73  (118)
 52 >3eco_A MEPR; mutlidrug efflux  62.5     9.7 0.00029   17.4   7.9   73  153-226    25-104 (119)
 53 >3edp_A LIN2111 protein; APC88  62.3     9.8 0.00029   17.4   4.1   43  175-217    31-75  (76)
 54 >1hw1_A FADR, fatty acid metab  61.7      10  0.0003   17.3   4.2   43  175-217    29-73  (77)
 55 >3bj6_A Transcriptional regula  61.6      10  0.0003   17.3   9.8   73  151-226    32-111 (125)
 56 >2ek5_A Predicted transcriptio  61.1      10  0.0003   17.3   4.9   48  175-222    26-75  (101)
 57 >1tns_A MU-transposase; DNA-bi  60.8     6.7  0.0002   18.5   2.6   37  174-210     2-38  (76)
 58 >2heo_A Z-DNA binding protein   59.9      11 0.00032   17.1   5.3   44  171-216    20-66  (67)
 59 >3c7j_A Transcriptional regula  59.3      11 0.00032   17.1   4.6   46  171-216    44-90  (91)
 60 >3i53_A O-methyltransferase; C  58.9      11 0.00033   17.0   4.6   56  166-223    30-86  (90)
 61 >2frh_A SARA, staphylococcal a  58.2      11 0.00034   16.9   5.7   77  149-226    27-110 (127)
 62 >1j5y_A Transcriptional regula  58.1     9.6 0.00028   17.5   3.1   48  169-216    29-77  (79)
 63 >1ixc_A CBNR, LYSR-type regula  56.8     9.7 0.00029   17.4   2.9   48  177-226    16-68  (88)
 64 >1tw3_A COMT, carminomycin 4-O  56.6      12 0.00036   16.8   3.9   56  166-223    15-71  (80)
 65 >3bja_A Transcriptional regula  56.2      12 0.00037   16.7   9.2   65  162-226    33-104 (118)
 66 >1yyv_A Putative transcription  55.4      13 0.00038   16.6   5.3   54  173-227    45-107 (131)
 67 >3f6v_A Possible transcription  55.0      10  0.0003   17.3   2.8   49  173-221    68-120 (131)
 68 >3boq_A Transcriptional regula  54.6      13 0.00039   16.5  10.1   58  169-226    55-119 (133)
 69 >2nnn_A Probable transcription  54.5      13 0.00039   16.5   3.3   44  166-209     8-52  (65)
 70 >2p4w_A Transcriptional regula  54.2      13 0.00039   16.5   3.5   43  174-216    26-69  (77)
 71 >3f8m_A GNTR-family protein tr  53.5      14  0.0004   16.4   3.6   40  174-213    33-74  (77)
 72 >3fm5_A Transcriptional regula  52.8      14 0.00041   16.4   6.2   74  151-226    31-111 (124)
 73 >2rhq_B Phenylalanyl-tRNA synt  52.7      14 0.00041   16.3   5.0   46  171-216    30-75  (108)
 74 >1qgp_A Protein (double strand  52.2      14 0.00042   16.3   5.9   48  167-217    22-75  (77)
 75 >2r3s_A Uncharacterized protei  52.0      14 0.00042   16.3   5.0   55  166-223    15-70  (79)
 76 >1u2w_A CADC repressor, cadmiu  51.7      14 0.00043   16.2   4.4   48  170-217    23-71  (95)
 77 >1b7y_B Phers, protein (phenyl  49.9      15 0.00046   16.0   5.5   71  171-258    25-95  (103)
 78 >1z7u_A Hypothetical protein E  49.8      15 0.00046   16.0   5.5   55  173-228    32-95  (112)
 79 >1amf_A Molybdate transport pr  49.7      13 0.00039   16.5   2.7   28   79-106    95-123 (126)
 80 >2jsc_A Transcriptional regula  48.1     8.9 0.00026   17.7   1.6   45  173-217    31-76  (118)
 81 >1ku9_A Hypothetical protein M  47.7      17 0.00049   15.8   6.9   60  149-210    16-76  (88)
 82 >2di3_A Bacterial regulatory p  47.1      17  0.0005   15.8   3.0   43  172-214    23-67  (78)
 83 >2nyx_A Probable transcription  46.8      17 0.00051   15.7   3.4   41  169-209    10-51  (64)
 84 >3hot_A Transposable element m  46.4      17 0.00051   15.7   4.0   35  170-206    15-49  (52)
 85 >3ic7_A Putative transcription  45.3       8 0.00024   18.0   1.0   39  178-216     8-47  (49)
 86 >3fxq_A LYSR type regulator of  45.0      18 0.00054   15.5   4.3   48  177-226    17-69  (91)
 87 >2oqg_A Possible transcription  44.7      18 0.00055   15.5   3.7   43  174-216    32-75  (79)
 88 >1sfx_A Conserved hypothetical  43.6      19 0.00057   15.4   3.1   42  172-215    12-57  (64)
 89 >1r7j_A Conserved hypothetical  43.5      19 0.00057   15.4   5.2   51  174-227    18-71  (95)
 90 >2cxi_A Phenylalanyl-tRNA synt  43.2      19 0.00057   15.4   5.0   42  175-216     6-47  (71)
 91 >3df8_A Possible HXLR family t  42.5      20 0.00059   15.3   6.8   53  175-228    19-76  (89)
 92 >3fzv_A Probable transcription  42.2      20 0.00059   15.3   4.3   51  176-226    18-72  (88)
 93 >1sfu_A 34L protein; protein/Z  41.8      20  0.0006   15.2   5.5   43  171-215    24-71  (75)
 94 >2ip2_A Probable phenazine-spe  41.8      20  0.0006   15.2   5.1   51  166-220    33-86  (89)
 95 >3ihu_A Transcriptional regula  40.6      21 0.00063   15.1   4.8   46  171-216    34-80  (82)
 96 >1gdt_A GD resolvase, protein   40.2      18 0.00052   15.7   2.1   24  177-202    18-41  (42)
 97 >2gxg_A 146AA long hypothetica  39.5      22 0.00065   15.0   9.0   55  172-226    46-107 (121)
 98 >3deu_A Transcriptional regula  38.8      23 0.00067   14.9   7.3   65  162-226    53-125 (139)
 99 >2v79_A DNA replication protei  38.1      23 0.00068   14.8   3.0   34  172-207    32-68  (120)
100 >3f3x_A Transcriptional regula  37.7      23 0.00069   14.8   4.4   54  173-226    47-107 (122)
101 >2a61_A Transcriptional regula  37.7      23 0.00069   14.8   3.5   42  168-209    11-53  (66)
102 >2w48_A Sorbitol operon regula  37.1      24 0.00071   14.7   2.9   26  175-202    20-45  (54)
103 >2fbh_A Transcriptional regula  36.8      24 0.00072   14.7   4.8   38  172-209    14-52  (67)
104 >2ict_A Antitoxin HIGA; helix-  36.6      24 0.00072   14.7   3.3   24  176-201    21-44  (46)
105 >3dbw_A Transcriptional regula  35.9      25 0.00074   14.6   4.1   50   63-112    38-87  (226)
106 >1fy7_A ESA1 histone acetyltra  35.2      26 0.00076   14.5   4.3   73  170-247    49-123 (123)
107 >2kfs_A Conserved hypothetical  34.8      26 0.00077   14.5   3.2   33  172-206    27-59  (75)
108 >1hsj_A Fusion protein consist  34.6      26 0.00077   14.5   3.3   55  172-226    16-77  (87)
109 >3bwg_A Uncharacterized HTH-ty  34.4      26 0.00078   14.5   4.6   44  173-216    25-70  (82)
110 >2rdp_A Putative transcription  32.3      28 0.00084   14.2   8.1   65  162-226    42-113 (127)
111 >2hzt_A Putative HTH-type tran  32.3      28 0.00084   14.2   4.7   47  172-219    23-78  (78)
112 >2hs5_A Putative transcription  32.2      29 0.00084   14.2   4.8   46  171-216    46-92  (94)
113 >2wv0_A YVOA, HTH-type transcr  32.2      29 0.00085   14.2   4.9   43  174-216    31-75  (82)
114 >3bro_A Transcriptional regula  31.8      29 0.00086   14.2   4.8   33  177-209     2-35  (51)
115 >1v4r_A Transcriptional repres  30.7      30 0.00089   14.1   2.2   42  174-215    32-75  (102)
116 >1p4x_A Staphylococcal accesso  30.4      31  0.0009   14.0   4.5   55  172-226    15-76  (95)
117 >1uly_A Hypothetical protein P  30.3      31 0.00091   14.0   2.6   41  173-213    21-62  (74)
118 >1g2h_A Transcriptional regula  28.6      33 0.00097   13.8   3.2   28  176-205    33-60  (61)
119 >3cec_A Putative antidote prot  28.4      33 0.00097   13.8   2.9   25  176-202    31-55  (56)
120 >3lmm_A Uncharacterized protei  28.2      14 0.00042   16.3   0.0   50  169-218   114-167 (174)
121 >1bm8_A Transcription factor M  27.5      34   0.001   13.7   5.2   51  173-225    27-86  (99)
122 >2pn6_A ST1022, 150AA long hyp  25.2      37  0.0011   13.4   3.4   35  169-205    10-47  (53)
123 >1y6u_A XIS, excisionase from   24.7      38  0.0011   13.3   4.7   45  171-217    11-57  (70)
124 >1whz_A Hypothetical protein;   23.7      40  0.0012   13.2   2.6   24  189-212     4-27  (70)
125 >3e7l_A Transcriptional regula  23.5      40  0.0012   13.2   3.7   28  177-206    33-60  (63)
126 >1ntc_A Protein (nitrogen regu  23.1      29 0.00085   14.2   0.8   27  177-205    65-91  (91)
127 >2p8t_A Hypothetical protein P  22.6      42  0.0012   13.1   6.0   49  172-223    26-77  (200)
128 >1nd9_A Translation initiation  21.5      44  0.0013   12.9   2.2   29  176-206     2-30  (49)
129 >1x19_A CRTF-related protein;   21.4      44  0.0013   12.9   6.4   46  178-230     6-54  (57)
130 >3eet_A Putative GNTR-family t  21.4      44  0.0013   12.9   5.2   41  172-212    48-90  (96)
131 >2e1c_A Putative HTH-type tran  20.9      45  0.0013   12.9   2.8   37  169-205    34-71  (77)
132 >2wwb_B SEC61gamma, protein tr  20.9      45  0.0013   12.8   1.8   21   73-93     17-37  (68)

No 1  
>>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:1-138)
Probab=94.46  E-value=0.13  Score=30.34  Aligned_cols=57  Identities=18%  Similarity=0.176  Sum_probs=46.4

Q ss_pred             HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf             4155873239999997389988-89999999978976853799443657897543553
Q gi|254780125|r  170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      ++...+.+++++||+.+|+..+ ...+-+.|.+.|+..+...+.+.+|++|.......
T Consensus        14 ~~~~~~~~t~~~lA~~lgis~~tvt~~l~~Le~~GlV~~~r~~~v~lT~~G~~~~~~~   71 (138)
T 3hrs_A           14 LGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDL   71 (138)
T ss_dssp             TTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
T ss_conf             9834998759999999789928999999999988997863895189878799999999


No 2  
>>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} (A:)
Probab=94.42  E-value=0.1  Score=31.04  Aligned_cols=56  Identities=20%  Similarity=0.068  Sum_probs=45.1

Q ss_pred             HCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf             15587323999999738998-889999999978976853799443657897543553
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      ....+.++.++||+.+|+.. |....-+.|.+.|+..++..+.+.||++|...+...
T Consensus        49 ~~~~~~v~~~dlA~~l~vs~~tv~~~l~~L~~~Gli~~~~~~~i~LT~~G~~~a~~~  105 (155)
T 2h09_A           49 IREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQES  105 (155)
T ss_dssp             HHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
T ss_conf             822797739999988598857899999999769977754987456637699999999


No 3  
>>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... (A:1-146)
Probab=94.29  E-value=0.13  Score=30.21  Aligned_cols=56  Identities=18%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             HCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf             15587323999999738998-889999999978976853799443657897543553
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      ....+.++.++||+.+|++. +....-+.|.+.|+..|...+.+.+|++|.......
T Consensus        19 ~~~~~~v~~~elA~~l~vs~~svt~~i~rLe~~GlI~~~~~~~i~lT~~G~~~~~~~   75 (146)
T 2qq9_A           19 EEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAV   75 (146)
T ss_dssp             HHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHH
T ss_conf             865997619999999789927999999999977995205874477417689999999


No 4  
>>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} (A:)
Probab=94.18  E-value=0.13  Score=30.26  Aligned_cols=65  Identities=15%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCEEECCCCCEEECHHHHHHHH
Q ss_conf             20013466654155873239999997389988899999---999789768537994436578975435
Q gi|254780125|r  160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFLNK---LLLKRGLQVSKVSGGYRPTPKGEERGG  224 (262)
Q Consensus       160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~sa~~~N~---lL~~~g~q~Rk~~~~W~lt~kg~~~g~  224 (262)
                      +.|--..-..++...+.++...||+.+|+..|..++.+   -|.+.|+..+..++.|.+|++|..+-.
T Consensus        11 ~~ptd~~ILe~L~~~g~~s~~eIA~~lgi~~S~~~Vs~~l~~L~~~GLve~~~~g~Y~lT~~G~~~L~   78 (111)
T 3b73_A           11 XTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN   78 (111)
T ss_dssp             CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHH
T ss_conf             45448999999987378888898861366833889999999999778755379970671770899973


No 5  
>>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} (A:)
Probab=93.35  E-value=0.2  Score=28.99  Aligned_cols=56  Identities=20%  Similarity=0.253  Sum_probs=44.5

Q ss_pred             HCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf             15587323999999738998-889999999978976853799443657897543553
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      ....+..+.++||+.||+.. |....-+.|.+.|+..+...+.+.+|++|...+...
T Consensus        17 ~~~~~~v~~~diA~~l~Vs~~sV~~~i~~L~~~GlV~~~~~~~v~LT~~G~~~a~~~   73 (142)
T 1on2_A           17 IEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRL   73 (142)
T ss_dssp             HHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHH
T ss_conf             963899769999999698878999999999977996506898667767899999999


No 6  
>>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} (A:1-141)
Probab=92.39  E-value=0.49  Score=26.33  Aligned_cols=56  Identities=16%  Similarity=0.082  Sum_probs=43.9

Q ss_pred             HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf             155873239999997389988-89999999978976853799443657897543553
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      ....+.+++++||+.+|++.+ ....-+.|.+.|+..+...+.-.+|++|.......
T Consensus        19 ~~~~~~v~~~eLA~~l~vs~~tvt~~l~kLe~~glv~~~~~~~v~lT~~g~~~~~~~   75 (141)
T 1fx7_A           19 EEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAV   75 (141)
T ss_dssp             HHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHH
T ss_pred             HHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
T ss_conf             844997519999999789916899999999879988973998778887899999999


No 7  
>>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95)
Probab=91.91  E-value=0.63  Score=25.55  Aligned_cols=61  Identities=13%  Similarity=0.062  Sum_probs=49.0

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf             66654155873239999997389988-89999999978976853799443657897543553
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      ..+.+..+..-++.++||+.+|++.| ..++=.-|.+.||..+...+.|.|..+-..+|...
T Consensus        28 iL~~l~~~~~~~~~~eia~~lgl~~st~~RlL~tL~~~G~v~~~~~g~y~lG~~l~~l~~~~   89 (95)
T 2o0y_A           28 LLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATXCARSVLTSRADGSYSLGPEXLRWVRLA   89 (95)
T ss_dssp             HHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHH
T ss_conf             99999747999899999999792989999999999966908984255531381899998754


No 8  
>>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} (A:)
Probab=88.91  E-value=0.92  Score=24.45  Aligned_cols=52  Identities=19%  Similarity=0.135  Sum_probs=38.3

Q ss_pred             HHCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCC--CCEEECHHHHHH
Q ss_conf             415587323999999738998889999999---97897685379--944365789754
Q gi|254780125|r  170 SSDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVS--GGYRPTPKGEER  222 (262)
Q Consensus       170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~--~~W~lt~kg~~~  222 (262)
                      ++.+.|-.++-+||+.||++ +++.+|+-|   .+.|..++..+  -.|.||.++...
T Consensus        19 ~Lk~~G~~tA~~lAk~Lglt-t~k~vn~~Ly~Le~~g~v~~~d~~Pp~W~Lt~~~~~r   75 (79)
T 1xmk_A           19 YLFNVSDSSALNLAKNIGLT-KARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRER   75 (79)
T ss_dssp             HHHHTCCEEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHTT
T ss_pred             HHHHCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHH
T ss_conf             99965984399999994997-2677759999999756800179999964523021056


No 9  
>>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64)
Probab=88.66  E-value=1.1  Score=23.82  Aligned_cols=50  Identities=20%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEE
Q ss_conf             66654155873239999997389988-899999999789768537994436
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRP  215 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~l  215 (262)
                      ..+.+.+....+++++||..+|++.| ..++-.-|.+.||..+...+.|.|
T Consensus        13 iL~~l~~~~~~~t~~eia~~~glp~st~~Rll~tL~~~g~l~~~~~~~Y~l   63 (64)
T 1mkm_A           13 ILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVP   63 (64)
T ss_dssp             HHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEE
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEC
T ss_conf             999997289998999999987919999999999999779864057754422


No 10 
>>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:1-91)
Probab=86.84  E-value=1.3  Score=23.48  Aligned_cols=64  Identities=25%  Similarity=0.189  Sum_probs=42.9

Q ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC---CEEECHHHHHHHHHH
Q ss_conf             13466654155873239999997389988-89999999978976853799---443657897543553
Q gi|254780125|r  163 MDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG---GYRPTPKGEERGGKM  226 (262)
Q Consensus       163 k~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~---~W~lt~kg~~~g~~~  226 (262)
                      ........+...+.++.++||+.+++..+ .-..-+.|.+.|+..|...+   .+.+|++|.+.-...
T Consensus        14 ~~~~iL~~i~~~~~~t~~ela~~l~i~~~~vs~~i~~L~~~gli~r~~D~R~~~i~lT~~G~~~~~~~   81 (91)
T 3cta_A           14 KKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE   81 (91)
T ss_dssp             HHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECHHHHHHHHHH
T ss_conf             99998564047998389999999887887999999999988998997349833344898899999999


No 11 
>>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} (A:45-125)
Probab=84.86  E-value=1.7  Score=22.55  Aligned_cols=61  Identities=18%  Similarity=-0.043  Sum_probs=40.8

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf             66654155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM  226 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~  226 (262)
                      .....+...+-.++++||+.+++..+ ....-+.|.+.|+..|...      ....+|++|.+.-...
T Consensus         8 ~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~   75 (81)
T 2fxa_A            8 HILWIAYQLNGASISEIAKFGVXHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSL   75 (81)
T ss_dssp             HHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             99999997699589999999845755377999999987996565588777614878898999999999


No 12 
>>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} (A:33-108)
Probab=84.85  E-value=2.6  Score=21.31  Aligned_cols=59  Identities=15%  Similarity=-0.024  Sum_probs=42.0

Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHH
Q ss_conf             466654155873239999997389988-8999999997897685379--9----443657897543
Q gi|254780125|r  165 IKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERG  223 (262)
Q Consensus       165 ~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g  223 (262)
                      ......+...+-+++++||+.+++..+ ...+-+.|.+.|+..|...  +    .-.+|++|.+.-
T Consensus         8 ~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~i~r~~~~~D~R~~~i~lT~~g~~~~   73 (76)
T 2bv6_A            8 FLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRXEQVDLIKRERSEVDQREVFIHLTDKSETIR   73 (76)
T ss_dssp             HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHH
T ss_conf             999999980799499999999798873799999999858988980068988867888898999999


No 13 
>>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75)
Probab=84.43  E-value=2.1  Score=22.03  Aligned_cols=52  Identities=17%  Similarity=0.183  Sum_probs=40.3

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHH
Q ss_conf             66654155873239999997389988-899999999789768537994436578
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPK  218 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~k  218 (262)
                      .-+.+.++...++.++||+.+|++.| ..++-.-|.+.||.. +..+.|.|..+
T Consensus        19 iL~~l~~~~~~~t~~eia~~~glp~stv~Rll~tL~~~g~l~-~~~g~Y~lG~~   71 (75)
T 2g7u_A           19 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA-GSGGRWSLTPR   71 (75)
T ss_dssp             HHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEECGG
T ss_pred             HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCCEEECHH
T ss_conf             999997379998999999997919999999999999799699-42874340389


No 14 
>>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:35-109)
Probab=82.43  E-value=2.2  Score=21.86  Aligned_cols=57  Identities=11%  Similarity=-0.063  Sum_probs=38.1

Q ss_pred             HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHH
Q ss_conf             654155873239999997389988-8999999997897685379--9----4436578975435
Q gi|254780125|r  168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGG  224 (262)
Q Consensus       168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~  224 (262)
                      ...+...+-+++++|++.+++..+ ....-+-|.+.||..|...  +    ...+|++|.++-.
T Consensus         8 L~~l~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~g~i~r~~~~~d~R~~~i~lT~~G~~~~~   71 (75)
T 2fbi_A            8 IRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV   71 (75)
T ss_dssp             HHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHH
T ss_conf             9999986998999999998867888999999999789879853156675122206898999999


No 15 
>>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} (A:)
Probab=82.36  E-value=1.3  Score=23.32  Aligned_cols=50  Identities=14%  Similarity=-0.015  Sum_probs=36.4

Q ss_pred             HHCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCC-CCEEECHHHH
Q ss_conf             415587323999999738998889999999---97897685379-9443657897
Q gi|254780125|r  170 SSDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVS-GGYRPTPKGE  220 (262)
Q Consensus       170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~-~~W~lt~kg~  220 (262)
                      ++.+.+.-.+..|||.||. .+++.+|+.|   .+.|...+... --|.+|+++.
T Consensus        18 ~L~~~g~~~Al~iAk~LGl-~~akeVN~~LY~L~k~g~l~~~~tpp~W~l~~k~~   71 (72)
T 3eyi_A           18 FLKDNGPQRALVIAQALGM-RTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRWTI   71 (72)
T ss_dssp             HHHHHCSEEHHHHHHHTTC-CSGGGTHHHHHHHHHTTSEEECTTTCEEEEC----
T ss_pred             HHHHCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE
T ss_conf             9996699258899998581-11777568999999742777668867237787651


No 16 
>>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} (A:48-125)
Probab=82.16  E-value=3.4  Score=20.59  Aligned_cols=58  Identities=21%  Similarity=0.073  Sum_probs=39.4

Q ss_pred             HHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHH
Q ss_conf             6654155873239999997389988-89999999978976853799------4436578975435
Q gi|254780125|r  167 HLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGG  224 (262)
Q Consensus       167 ~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~  224 (262)
                      ....+...+.+++++||..+++..+ ...+-+-|.+.||..|..+.      .-.||++|.+.-.
T Consensus        10 iL~~l~~~g~~t~~ela~~~~~~~~~vs~~i~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~   74 (78)
T 3cjn_A           10 ALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYD   74 (78)
T ss_dssp             HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHH
T ss_pred             HHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHCCCHHHHHHHH
T ss_conf             99999847998999999997888332458899999988540110577775301004677999999


No 17 
>>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A (A:44-114)
Probab=82.11  E-value=3.4  Score=20.58  Aligned_cols=55  Identities=22%  Similarity=0.139  Sum_probs=37.2

Q ss_pred             HHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHH
Q ss_conf             6654155873239999997389988-89999999978976853799------4436578975
Q gi|254780125|r  167 HLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEE  221 (262)
Q Consensus       167 ~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~  221 (262)
                      ....+...+-.++++||+.+++..+ ....-+.|.+.||.+|....      .-.||++|++
T Consensus         9 iL~~i~~~~~~t~~~la~~~~i~~~~~s~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~   70 (71)
T 2pex_A            9 VMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRA   70 (71)
T ss_dssp             HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCHHH
T ss_conf             99999847998999999997968878999999999889989810898878479888935899


No 18 
>>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} (A:34-111)
Probab=81.22  E-value=2  Score=22.13  Aligned_cols=59  Identities=24%  Similarity=0.107  Sum_probs=39.1

Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHH
Q ss_conf             466654155873239999997389988-8999999997897685379------9443657897543
Q gi|254780125|r  165 IKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERG  223 (262)
Q Consensus       165 ~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g  223 (262)
                      .....++...+-+++++||..+++..+ ...+-+.|.+.|+..|...      ....+|++|.+.-
T Consensus        10 ~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~G~~~~   75 (78)
T 1z91_A           10 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLK   75 (78)
T ss_dssp             HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGG
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECHHHHHHH
T ss_conf             999999885899999999999796876688999999978997861388888820347898899999


No 19 
>>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86)
Probab=81.20  E-value=2.9  Score=20.99  Aligned_cols=58  Identities=16%  Similarity=0.128  Sum_probs=43.3

Q ss_pred             HHHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHH
Q ss_conf             665415587323999999738998-88999999997897685379944365789754355
Q gi|254780125|r  167 HLPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGK  225 (262)
Q Consensus       167 ~d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~  225 (262)
                      .+.+.+...-++.++||..+|++. +..++=+-|.+.||.. +..+.|.+-.+-..+|..
T Consensus        27 L~~l~~~~~~~tl~eia~~lg~~~st~~RlL~tL~~~g~v~-~~~~~y~lG~~~~~l~~a   85 (86)
T 2ia2_A           27 IRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVA-TDGSAFWLTPRVLELGYS   85 (86)
T ss_dssp             HHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE-ESSSEEEECGGGGGTTHH
T ss_pred             HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEECCHHHHHHHH
T ss_conf             99997379996999999997939999999999999779966-559703545313335777


No 20 
>>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} (A:1-134)
Probab=81.05  E-value=3.4  Score=20.51  Aligned_cols=66  Identities=11%  Similarity=0.094  Sum_probs=45.2

Q ss_pred             CHHHHHHHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHHC
Q ss_conf             01346665415587323999999738998-88999999997897685379--9----4436578975435530
Q gi|254780125|r  162 AMDIKHLPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKMC  227 (262)
Q Consensus       162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~~  227 (262)
                      +........+...+.+++++||+.+++.. +..++-+.|.+.|+..|..+  +    .-.+|++|++.-....
T Consensus        49 ~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~vsr~v~~Le~~Glv~r~~~~~D~R~~~v~lT~~G~~~~~~~~  121 (134)
T 2fa5_A           49 IPEWRVITILALYPGSSASEVSDRTAXDKVAVSRAVARLLERGFIRRETHGDDRRRSXLALSPAGRQVYETVA  121 (134)
T ss_dssp             HHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCHHHHHHHHHHH
T ss_conf             9999999999858997999999998848889999999983188253305676641125540598999999999


No 21 
>>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A (A:1-122)
Probab=80.98  E-value=3.7  Score=20.32  Aligned_cols=67  Identities=16%  Similarity=0.070  Sum_probs=46.4

Q ss_pred             HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf             20013466654155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r  160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM  226 (262)
Q Consensus       160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~  226 (262)
                      +.+........+...+-+++++||+.+++..+ ...+-+.|.+.|+..|...      ....+|++|.+.-...
T Consensus        35 lt~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~G~~~~~~~  108 (122)
T 3ech_A           35 LTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHA  108 (122)
T ss_dssp             CCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             89999999999998799899999999793572699999999996132000167767413657888899999999


No 22 
>>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} (A:31-133)
Probab=80.28  E-value=3.9  Score=20.16  Aligned_cols=65  Identities=15%  Similarity=0.101  Sum_probs=44.0

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHH
Q ss_conf             0013466654155873239999997389988-8999999997897685379------944365789754355
Q gi|254780125|r  161 EAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGK  225 (262)
Q Consensus       161 ~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~  225 (262)
                      .+........+...+-+++++||+.+++..+ ...+-+.|.+.|+..|..+      ....||++|...-..
T Consensus        12 ~~~~~~iL~~i~~~~~~t~~~la~~~~~~~~~vsr~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~   83 (103)
T 3cdh_A           12 RVPEWRVLACLVDNDAXXITRLAKLSLXEQSRXTRIVDQXDARGLVTRVADAKDKRRVRVRLTDDGRALAES   83 (103)
T ss_dssp             CHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHH
T ss_conf             999999999998188959999999968886436556999872224354236788861688877608999999


No 23 
>>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-130)
Probab=80.19  E-value=3.8  Score=20.20  Aligned_cols=66  Identities=21%  Similarity=0.149  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             0013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  161 EAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       161 ~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      .+........+...+-+++++||+.+++..+ ....-+.|.+.|+..|..+.      .-.||++|.+.....
T Consensus        43 t~~~~~iL~~l~~~~~~t~~eLa~~~~i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~  115 (130)
T 2eth_A           43 KTTELYAFLYVALFGPKKXKEIAEFLSTTKSNVTNVVDSLEKRGLVVREXDPVDRRTYRVVLTEKGKEIFGEI  115 (130)
T ss_dssp             BHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCHHHHHHHHHH
T ss_conf             9999999999998599599999999896998999999999878884565203566411002188899999999


No 24 
>>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} (A:30-102)
Probab=79.01  E-value=4.2  Score=19.90  Aligned_cols=56  Identities=25%  Similarity=0.163  Sum_probs=38.8

Q ss_pred             HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHH
Q ss_conf             654155873239999997389988-89999999978976853799------443657897543
Q gi|254780125|r  168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERG  223 (262)
Q Consensus       168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g  223 (262)
                      ..++...+-+++++||+.+++..+ ...+-+.|.+.||..|....      .-.||++|...-
T Consensus         8 L~~l~~~~~~~~~~la~~~~~~~stvs~~i~~L~~~g~I~r~~~~~D~R~~~l~LT~~G~~~~   70 (73)
T 3bdd_A            8 LQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL   70 (73)
T ss_dssp             HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHH
T ss_conf             999998699899999999871575899999999977880325289999841012789899999


No 25 
>>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:54-141)
Probab=78.11  E-value=2.9  Score=21.00  Aligned_cols=54  Identities=11%  Similarity=0.100  Sum_probs=39.9

Q ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCE-EECCCCCEEECHHHHHHHHH
Q ss_conf             5587323999999738998889999999978976-85379944365789754355
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQ-VSKVSGGYRPTPKGEERGGK  225 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q-~Rk~~~~W~lt~kg~~~g~~  225 (262)
                      .....++..+|+..||+..|..-+.+.|++.|+. +.+......||.+....=..
T Consensus        20 ~~~~~~t~~~l~~~lg~~vS~~Tv~r~L~~~g~~~~~~~~~kP~Lt~~~~~~Rl~   74 (88)
T 1u78_A           20 ASNSCKTARDIRNELQLSASKRTILNVIKRSGVIVRQKLRPAPLLSADHKLKRLE   74 (88)
T ss_dssp             HHHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC-----------------------
T ss_pred             HHCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHH
T ss_conf             9762467889999818786799999999987972224577899999999999999


No 26 
>>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} (A:)
Probab=77.63  E-value=4.6  Score=19.67  Aligned_cols=60  Identities=17%  Similarity=0.093  Sum_probs=40.9

Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCEEECCC---C---CEEECHHHHHHHHHH
Q ss_conf             46665415587323999999738998889999---99997897685379---9---443657897543553
Q gi|254780125|r  165 IKHLPSSDNDEYLTITQIGERLNPPQRARFLN---KLLLKRGLQVSKVS---G---GYRPTPKGEERGGKM  226 (262)
Q Consensus       165 ~~~d~~~~~~~~l~~t~iak~l~~~~sa~~~N---~lL~~~g~q~Rk~~---~---~W~lt~kg~~~g~~~  226 (262)
                      ..-...+...+-+++++|++.+++  +...++   +.|.+.|+..|...   +   ...+|++|.+.-...
T Consensus        19 ~~il~~l~~~~~~t~~eLa~~~~i--~~~~~s~~l~~L~~~GlV~~~~~~~d~R~~~~~LT~~G~~~~~~~   87 (100)
T 1ub9_A           19 LGIMIFLLPRRKAPFSQIQKVLDL--TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRF   87 (100)
T ss_dssp             HHHHHHHHHHSEEEHHHHHHHTTC--CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHH--CCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf             999999726789619999998852--687441999986421248888767667542022689999999999


No 27 
>>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} (A:45-122)
Probab=74.70  E-value=4.5  Score=19.74  Aligned_cols=45  Identities=11%  Similarity=0.043  Sum_probs=31.7

Q ss_pred             CCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             58732399999973899888-9999999978976853799443657
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      ..+..++++||+.+|++.++ ..--+.|.+.|+..+...|.|..|.
T Consensus        12 ~~~~~~~~ela~~l~~s~stvs~HL~~L~~aGlv~~~r~Gr~v~y~   57 (78)
T 1r1t_A           12 ARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQ   57 (78)
T ss_dssp             TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred             HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf             8199569999999891988999999999988913789875889999


No 28 
>>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} (A:1-131)
Probab=74.62  E-value=5.5  Score=19.10  Aligned_cols=67  Identities=16%  Similarity=0.135  Sum_probs=45.6

Q ss_pred             HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC----C----CCEEECHHHHHHHHHH
Q ss_conf             20013466654155873239999997389988-899999999789768537----9----9443657897543553
Q gi|254780125|r  160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV----S----GGYRPTPKGEERGGKM  226 (262)
Q Consensus       160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~----~----~~W~lt~kg~~~g~~~  226 (262)
                      +.+........+...+.+++++||+.+++..+ .-.+-+-|.+.|+..|..    .    ..+.||++|.+.-...
T Consensus        39 lt~~q~~iL~~i~~~~~~t~~~la~~l~~~~s~vs~~i~~L~~~glV~r~~~~d~~D~R~~~i~LT~~G~~~~~~~  114 (131)
T 2qww_A           39 LTIQQLAXINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSXDLTLKLSKKGEDLSKRS  114 (131)
T ss_dssp             CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf             9889999999999879989999999978644666266579998778652320235666522425677899999999


No 29 
>>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} (A:1-157)
Probab=74.07  E-value=5.7  Score=19.01  Aligned_cols=79  Identities=18%  Similarity=0.095  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHH
Q ss_conf             9999983023420013466654155873239999997389988-8999999997897685379------94436578975
Q gi|254780125|r  149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEE  221 (262)
Q Consensus       149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~  221 (262)
                      .......++...+-..............+++++||+.+++..+ .-.+-+-|.+.||..|...      ..-.||++|..
T Consensus        59 ~~~~~~~~l~~~~~~vL~~l~~~~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~Gli~r~~~~~DrR~~~i~lT~~G~~  138 (157)
T 2fbk_A           59 ERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRA  138 (157)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCHHHHH
T ss_conf             99998869899999999999862899996999999997868757999999998667712310565430245422787999


Q ss_pred             HHHHHC
Q ss_conf             435530
Q gi|254780125|r  222 RGGKMC  227 (262)
Q Consensus       222 ~g~~~~  227 (262)
                      +.....
T Consensus       139 ~~~~~~  144 (157)
T 2fbk_A          139 LVTHLL  144 (157)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999


No 30 
>>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} (A:30-120)
Probab=74.01  E-value=5.7  Score=19.00  Aligned_cols=59  Identities=20%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      ..++...+-+++++||+.+++..+ ..++-+.|.+.|+..|....      .-.||++|+..-...
T Consensus         8 L~~l~~~~~~t~~eia~~l~~~~~~vs~~i~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~~~   73 (91)
T 3g3z_A            8 LYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPL   73 (91)
T ss_dssp             HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCCCCHHHHCCCHHHHHHHHHH
T ss_conf             999998699499999999897898999999999831002000266556403211388899999999


No 31 
>>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} (A:)
Probab=73.85  E-value=5.1  Score=19.35  Aligned_cols=58  Identities=12%  Similarity=0.048  Sum_probs=40.5

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             54155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      .++...+-+++.+||+.+++..+ .-..-+-|.+.|+..|....      .+.+|++|.++...+
T Consensus        29 ~~l~~~~~~t~~eLa~~l~i~~~tvs~~l~~L~~~glI~r~~~~~d~R~~~i~lT~~g~~~~~~~   93 (109)
T 2d1h_A           29 KXVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKI   93 (109)
T ss_dssp             HHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCHHHHHHH
T ss_conf             99984969899999999788723499999999987986362687789873478751789999999


No 32 
>>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} (A:28-114)
Probab=73.24  E-value=6  Score=18.87  Aligned_cols=56  Identities=14%  Similarity=0.040  Sum_probs=37.9

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCEEECCC-----C-CEEECHHHHHHHHHH
Q ss_conf             5415587323999999738998889999---99997897685379-----9-443657897543553
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQRARFLN---KLLLKRGLQVSKVS-----G-GYRPTPKGEERGGKM  226 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~sa~~~N---~lL~~~g~q~Rk~~-----~-~W~lt~kg~~~g~~~  226 (262)
                      ..+...+-+++++||+.+++  +...++   +.|.+.|+..|...     . .-.+|++|.+.-...
T Consensus         9 ~~l~~~~~~t~~~la~~l~~--~~~~vs~~v~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~~~   73 (87)
T 1lj9_A            9 VRVCENPGIIQEKIAELIKV--DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII   73 (87)
T ss_dssp             HHHHHSTTEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred             HHHHHCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             99983899799999999897--885899999999988996306799998911447898999999999


No 33 
>>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} (A:)
Probab=72.14  E-value=3.4  Score=20.59  Aligned_cols=48  Identities=17%  Similarity=0.001  Sum_probs=36.8

Q ss_pred             HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             415587323999999738998889999999978976853799443657
Q gi|254780125|r  170 SSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      .+...+-+++++|++.+++..+...-.--|.+.|+......|+|.-|.
T Consensus        35 ~L~~~~~~~v~ela~~l~~s~stvS~HLkL~~aGli~~~r~G~~~~Y~   82 (99)
T 2zkz_A           35 ELYKHKALNVTQIIQILKLPQSTVSQHLCKXRGKVLKRNRQGLEIYYS   82 (99)
T ss_dssp             HHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTTTBEEEEETTEEEEE
T ss_pred             HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCEEEEE
T ss_conf             997289946999999988698899999999982980589987889999


No 34 
>>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:)
Probab=71.95  E-value=6.4  Score=18.68  Aligned_cols=49  Identities=14%  Similarity=0.212  Sum_probs=35.5

Q ss_pred             HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC---CEEECHHHHHH
Q ss_conf             15587323999999738998889999999---978976853799---44365789754
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG---GYRPTPKGEER  222 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~---~W~lt~kg~~~  222 (262)
                      +-..+.+++-+|||.|++  +-+.+|+.|   .+.|..++ +.+   .|.++......
T Consensus        22 ~~~~~~~tA~~LAk~Lgi--~Kk~vNr~LY~L~k~g~v~~-~~~~PP~W~l~~~~~~~   76 (81)
T 1qbj_A           22 LGEGKATTAHDLSGKLGT--PKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAVSTQAW   76 (81)
T ss_dssp             HCTTCCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEE-ESSSSCEEEEC------
T ss_pred             CCCCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEE-CCCCCCCEEECCCCCCC
T ss_conf             489975109999999698--88898999999998788320-58989963745788877


No 35 
>>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} (A:1-131)
Probab=71.66  E-value=6.5  Score=18.63  Aligned_cols=67  Identities=16%  Similarity=0.108  Sum_probs=46.9

Q ss_pred             HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             20013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      +.+........+...+-+++++||+.+++..+ .-.+-.-|.+.|+..|..+.      ...||++|.+.-...
T Consensus        44 lt~~q~~iL~~l~~~~~~t~~~La~~~~i~~~~vs~~v~~L~~~GlV~r~~~~~D~R~~~i~lT~~G~~~~~~~  117 (131)
T 3k0l_A           44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQC  117 (131)
T ss_dssp             CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf             89999999999996799799999998588946489999999987984674347777137878777289999999


No 36 
>>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} (A:)
Probab=70.93  E-value=5.1  Score=19.35  Aligned_cols=37  Identities=11%  Similarity=-0.037  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC
Q ss_conf             8732399999973899888999999997897685379
Q gi|254780125|r  174 DEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVS  210 (262)
Q Consensus       174 ~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~  210 (262)
                      +..+++.+||..-|++.|.+.++..+...|+++|+..
T Consensus         2 kew~ta~ELagl~glP~t~~gv~~~Ak~e~W~~r~r~   38 (69)
T 1g4d_A            2 SIWCSPQEIMAADGMPGSVAGVHYRANVQGWTKRKKE   38 (69)
T ss_dssp             CCCBCHHHHHTSTTSCSSHHHHHHHHHHHTCCEEECC
T ss_pred             CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             7420588872678999882899999988778999876


No 37 
>>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99)
Probab=69.94  E-value=7  Score=18.38  Aligned_cols=53  Identities=8%  Similarity=-0.054  Sum_probs=34.9

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCC---EEECHHHHH
Q ss_conf             54155873239999997389988-899999999789768537994---436578975
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGG---YRPTPKGEE  221 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~---W~lt~kg~~  221 (262)
                      ..+...+-.++.+||+.+|++.+ ...--+.|.+.|+..+...|.   +.+...+.+
T Consensus        22 ~~L~~~~~~~~~ela~~l~is~~tvs~HL~~L~~~Glv~~~~~g~~~~y~l~~~~~~   78 (90)
T 3cuo_A           22 CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVN   78 (90)
T ss_dssp             HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHH
T ss_conf             999769994199999998929878999999999889517998889999998869999


No 38 
>>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} (A:30-123)
Probab=69.46  E-value=7.2  Score=18.32  Aligned_cols=58  Identities=12%  Similarity=0.017  Sum_probs=40.2

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf             54155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM  226 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~  226 (262)
                      .+.++++.+++++||+.+++..+ ...+-+-|.+.|+..|...      ..-.+|++|.+.-...
T Consensus        14 ~l~~~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~GlI~r~~~~~D~R~~~i~lT~~G~~~~~~~   78 (94)
T 2hr3_A           14 AIDRLGGDVTPSELAAAERXRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGN   78 (94)
T ss_dssp             HHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHHHHHHHH
T ss_conf             99976999899999999797988999999999866976864275400477623668899999999


No 39 
>>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106)
Probab=69.23  E-value=7.3  Score=18.28  Aligned_cols=52  Identities=10%  Similarity=-0.038  Sum_probs=39.2

Q ss_pred             CCCCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH
Q ss_conf             558732-399999973899-8889999999978976853799443657897543
Q gi|254780125|r  172 DNDEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERG  223 (262)
Q Consensus       172 ~~~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g  223 (262)
                      .....+ +..++|+.+|++ .+.++.-..|.+.|+.++..++.|...+......
T Consensus        30 ~~G~~LPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~~~~~   83 (106)
T 3by6_A           30 SANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFITGNTASVK   83 (106)
T ss_dssp             CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECSCHHHHH
T ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCEEEEECCCHHHH
T ss_conf             994998449999999698989999999999978907997287789817950554


No 40 
>>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} (A:27-127)
Probab=68.50  E-value=7.5  Score=18.18  Aligned_cols=54  Identities=11%  Similarity=0.102  Sum_probs=38.8

Q ss_pred             CCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             587323999999738998-889999999978976853799------443657897543553
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      ..+.+++++||+.+++.. +.-..-+-|.+.|+..|....      ...||++|...-..+
T Consensus        28 ~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~   88 (101)
T 3jw4_A           28 QESGIIQKDLAQFFGRRGASITSXLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEF   88 (101)
T ss_dssp             TTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEECHHHHHHHHHH
T ss_conf             9999799999999897885899999999988896315777888860447898899999999


No 41 
>>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} (A:1-122)
Probab=67.12  E-value=8  Score=18.00  Aligned_cols=65  Identities=15%  Similarity=0.012  Sum_probs=42.5

Q ss_pred             CHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf             013466654155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r  162 AMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM  226 (262)
Q Consensus       162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~  226 (262)
                      +........+...+.+++++||+.+++..+ .-++-+-|.+.|+..|...      ....||++|.+.-...
T Consensus        34 ~~~~~iL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~  105 (122)
T 1jgs_A           34 AAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQC  105 (122)
T ss_dssp             HHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf             999999999987799899999999897886899999999868987984468888756888898899999999


No 42 
>>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} (A:1-122)
Probab=66.73  E-value=8.1  Score=17.95  Aligned_cols=67  Identities=15%  Similarity=0.190  Sum_probs=45.3

Q ss_pred             HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHH
Q ss_conf             20013466654155873239999997389988-8999999997897685379--9----443657897543553
Q gi|254780125|r  160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKM  226 (262)
Q Consensus       160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~  226 (262)
                      +.+.......++...+-+++++||+.+++..+ ....-+-|.+.|+..|...  +    .-.||++|.+.-...
T Consensus        35 ls~~q~~iL~~i~~~~~~t~~ela~~~~i~~~~vsr~v~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~  108 (122)
T 1s3j_A           35 VTPAQLFVLASLKKHGSLKVSEIAERXEVKPSAVTLXADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV  108 (122)
T ss_dssp             CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHH
T ss_conf             89999999999998699799999999896998999999999862425520233677520002489899999999


No 43 
>>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} (A:1-138)
Probab=66.64  E-value=8.2  Score=17.94  Aligned_cols=67  Identities=21%  Similarity=0.179  Sum_probs=45.5

Q ss_pred             HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf             20013466654155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r  160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM  226 (262)
Q Consensus       160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~  226 (262)
                      +.+........+...+-+++++||+.+++..+ .-.+-+.|.+.||..|...      ....||++|.+.-...
T Consensus        51 lt~~q~~iL~~l~~~~~~t~~ela~~~~~~~~~~s~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~  124 (138)
T 3e6m_A           51 LPTPKLRLLSSLSAYGELTVGQLATLGVXEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEI  124 (138)
T ss_dssp             CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCCHHHHHHHHHH
T ss_conf             79999999999985699699999999774798882999987418887750478998830011689899999999


No 44 
>>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* (A:1-114)
Probab=66.34  E-value=8.3  Score=17.90  Aligned_cols=67  Identities=12%  Similarity=0.046  Sum_probs=45.1

Q ss_pred             HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             20013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      +.+........+...+.+++++||+.+++..+ ....-+-|.+.|+..|..+.      .-.||++|.+....+
T Consensus        27 lt~~q~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~~DkR~~~i~LT~~G~~~~~~~  100 (114)
T 3bpv_A           27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLI  100 (114)
T ss_dssp             CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             79999999999985899899999999896988999999999968986861158998857878898999999999


No 45 
>>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A (A:1-82)
Probab=65.12  E-value=6.7  Score=18.52  Aligned_cols=45  Identities=13%  Similarity=0.001  Sum_probs=31.8

Q ss_pred             CCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             5873239999997389988-89999999978976853799443657
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      ..+-.++++||+.+|++.+ ...--+.|.+.|+......|.|..|.
T Consensus        35 ~~~~~~~~ela~~l~is~~tvs~HL~~L~~~glV~~~r~G~~~~Y~   80 (82)
T 2kko_A           35 AQGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYR   80 (82)
T ss_dssp             TTCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEE
T ss_pred             HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf             8199789999999890999999999999988922799888999999


No 46 
>>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:)
Probab=65.01  E-value=7.8  Score=18.10  Aligned_cols=45  Identities=22%  Similarity=0.140  Sum_probs=26.8

Q ss_pred             CCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             58732399999973899888-9999999978976853799443657
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      ..+.+++++||..+|++.+. ..-=+.|.+.|+..+...|+|..|.
T Consensus        21 ~~g~~tv~eLa~~lgis~~tvS~HL~~L~~~GlV~~~r~Gr~~~y~   66 (165)
T 2vxz_A           21 ADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVC   66 (165)
T ss_dssp             TTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEE
T ss_pred             HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf             7545089999998265089999999999866816999863447999


No 47 
>>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} (A:)
Probab=64.95  E-value=8.8  Score=17.72  Aligned_cols=43  Identities=23%  Similarity=0.115  Sum_probs=29.9

Q ss_pred             CCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             873239999997389988-8999999997897685379944365
Q gi|254780125|r  174 DEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       174 ~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      .+.+++++||+.+|++.+ ...--+.|.+.|+......|.|..|
T Consensus        37 ~~~~~~~ela~~l~is~stvs~HL~~L~~aglv~~~~~G~~~~Y   80 (106)
T 1r1u_A           37 VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIY   80 (106)
T ss_dssp             HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEE
T ss_conf             39946999998876586689999999998891489988789999


No 48 
>>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119)
Probab=64.69  E-value=8.9  Score=17.69  Aligned_cols=67  Identities=25%  Similarity=0.212  Sum_probs=45.2

Q ss_pred             HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             20013466654155873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      +.+.......++...+-+++++||+.+++..+ ....-+-|.+.|+..|....      .-.||++|.++-...
T Consensus        34 lt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~~~  107 (119)
T 3hsr_A           34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPL  107 (119)
T ss_dssp             CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHH
T ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf             89999999999987799899999999896886899999999817956985437898757888898899999999


No 49 
>>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} (A:)
Probab=64.50  E-value=9  Score=17.67  Aligned_cols=55  Identities=20%  Similarity=0.158  Sum_probs=41.6

Q ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC------CEEECHHHHHHHHHHC
Q ss_conf             558732399999973899888999999---9978976853799------4436578975435530
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG------GYRPTPKGEERGGKMC  227 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~  227 (262)
                      -..+.....++.+.+. |+|.+.+++.   |.+.|+..|..-.      .+.||++|.+..+...
T Consensus        34 l~~g~~rF~el~~~l~-gis~~~Ls~rLk~L~~~gli~r~~~~~~p~~veY~LT~~G~~L~~vl~   97 (107)
T 2fsw_A           34 INRRIIRYGELKRAIP-GISEKXLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIID   97 (107)
T ss_dssp             HTTSCEEHHHHHHHST-TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHH
T ss_pred             HHCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHCHHHHHHHHHHH
T ss_conf             8159987999964531-248678999999999889603334489998552301663888999999


No 50 
>>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64)
Probab=63.87  E-value=8.4  Score=17.86  Aligned_cols=44  Identities=25%  Similarity=0.275  Sum_probs=31.6

Q ss_pred             HHHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCC
Q ss_conf             6541558732399999973899-8889999999978976853799
Q gi|254780125|r  168 LPSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSG  211 (262)
Q Consensus       168 d~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~  211 (262)
                      ..++...+.+++.++|+.||++ .+.+.--+.|.+.|+..+..++
T Consensus        11 l~~L~~~~~is~~ela~~l~vS~~Ti~rdi~~L~~~G~~i~~~~g   55 (64)
T 1bia_A           11 IALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPG   55 (64)
T ss_dssp             HHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETT
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf             999856994689999999798999999999999976961999689


No 51 
>>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} (A:)
Probab=62.92  E-value=5.7  Score=18.99  Aligned_cols=45  Identities=11%  Similarity=0.111  Sum_probs=29.8

Q ss_pred             CCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             58732399999973899888-9999999978976853799443657
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      ..+-.++++||+.+|++.++ ..-=+.|.+.|+..+...|+|..|.
T Consensus        28 ~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~Glv~~~~~G~~~~y~   73 (118)
T 3f6o_A           28 SRGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCA   73 (118)
T ss_dssp             HTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEE
T ss_conf             8099777777988696999999999889988986267778889999


No 52 
>>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} (A:1-119)
Probab=62.47  E-value=9.7  Score=17.42  Aligned_cols=73  Identities=15%  Similarity=0.097  Sum_probs=43.3

Q ss_pred             HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHH
Q ss_conf             983023420013466654155873239999997389988-89999999978976853799------44365789754355
Q gi|254780125|r  153 KITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGK  225 (262)
Q Consensus       153 ~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~  225 (262)
                      ...++...+-...... ......-+++++||+.+++..+ .-..-+-|.+.|+..|..+.      ...+|++|.+.-..
T Consensus        25 ~~~~l~~~~~~vL~~l-~~~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~  103 (119)
T 3eco_A           25 EQFDITNEQGHTLGYL-YAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEA  103 (119)
T ss_dssp             GGGTCCHHHHHHHHHH-HHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHHHH
T ss_conf             8859799999999999-955999979999999989688899999999998889651689888892024278889999999


Q ss_pred             H
Q ss_conf             3
Q gi|254780125|r  226 M  226 (262)
Q Consensus       226 ~  226 (262)
                      .
T Consensus       104 ~  104 (119)
T 3eco_A          104 F  104 (119)
T ss_dssp             H
T ss_pred             H
T ss_conf             9


No 53 
>>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76)
Probab=62.34  E-value=9.8  Score=17.40  Aligned_cols=43  Identities=26%  Similarity=0.283  Sum_probs=32.5

Q ss_pred             CCC-CHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             732-3999999738998-889999999978976853799443657
Q gi|254780125|r  175 EYL-TITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       175 ~~l-~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      ..+ +..++++.+|++. +.+..-..|.+.|+.++..+.-+...+
T Consensus        31 ~~lpse~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~V~~   75 (76)
T 3edp_A           31 XLXPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQP   75 (76)
T ss_dssp             C--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEEECC
T ss_conf             999289999999794999999999999974161306886699941


No 54 
>>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} (A:1-77)
Probab=61.74  E-value=10  Score=17.33  Aligned_cols=43  Identities=12%  Similarity=0.077  Sum_probs=33.8

Q ss_pred             CCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             732-399999973899-8889999999978976853799443657
Q gi|254780125|r  175 EYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       175 ~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      ..+ +.+++|+.++++ .+.++.-..|.+.|+.++..+..+.+.+
T Consensus        29 ~~lps~~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~V~~   73 (77)
T 1hw1_A           29 TILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNN   73 (77)
T ss_dssp             SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEECC
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCEECC
T ss_conf             989069999999792999999999999986881542588416767


No 55 
>>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} (A:1-125)
Probab=61.57  E-value=10  Score=17.31  Aligned_cols=73  Identities=21%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHH
Q ss_conf             99983023420013466654155873239999997389988-89999999978976853799------443657897543
Q gi|254780125|r  151 VTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERG  223 (262)
Q Consensus       151 ~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g  223 (262)
                      .....++...+   ......+...+-+++++||+.+++..+ .-.+-+.|.+.|+..|....      ...||++|....
T Consensus        32 ~~~~~~lt~~q---~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~GlV~r~~~~~D~R~~~i~LT~~G~~~~  108 (125)
T 3bj6_A           32 GTLREGVTVGQ---RAILEGLSLTPGATAPQLGAALQXKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII  108 (125)
T ss_dssp             HHHHTTCCHHH---HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred             HHHHCCCCHHH---HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCHHHHHHH
T ss_conf             88676989999---999999998699899999999886575899999999870655765526755101002567689999


Q ss_pred             HHH
Q ss_conf             553
Q gi|254780125|r  224 GKM  226 (262)
Q Consensus       224 ~~~  226 (262)
                      ...
T Consensus       109 ~~~  111 (125)
T 3bj6_A          109 TAI  111 (125)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 56 
>>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A (A:1-101)
Probab=61.09  E-value=10  Score=17.26  Aligned_cols=48  Identities=15%  Similarity=0.093  Sum_probs=37.9

Q ss_pred             CCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHH
Q ss_conf             732-399999973899-888999999997897685379944365789754
Q gi|254780125|r  175 EYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEER  222 (262)
Q Consensus       175 ~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~  222 (262)
                      ..+ +..++|+.+|++ .+.++.-+.|.+.|+..+..++.|.+.+...+.
T Consensus        26 ~~LPse~~La~~~~VSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~~~~   75 (101)
T 2ek5_A           26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGXFVSAQAPAL   75 (101)
T ss_dssp             SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEECTTHHHH
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEECCCCHHH
T ss_conf             99967999999978995899999999997892799889883678999999


No 57 
>>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} (A:)
Probab=60.75  E-value=6.7  Score=18.54  Aligned_cols=37  Identities=11%  Similarity=0.128  Sum_probs=29.0

Q ss_pred             CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC
Q ss_conf             8732399999973899888999999997897685379
Q gi|254780125|r  174 DEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVS  210 (262)
Q Consensus       174 ~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~  210 (262)
                      +..+++.++|..-|++.|.+.++......|+++|+..
T Consensus         2 Kew~ta~ELagl~glP~t~~gv~~~Ak~e~W~~r~r~   38 (76)
T 1tns_A            2 ELWVSPKELANLPGLPKTSAGVIYVAKKQGWQNRTRA   38 (76)
T ss_dssp             CCEECHHHHTTCSSSCSSHHHHHHHHHTTCCCCCCCT
T ss_pred             CCCCCHHHHHCCCCCCCCHHHHHHHHHHCCHHHCCCC
T ss_conf             6316599992599999887999999986776652223


No 58 
>>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A (A:)
Probab=59.88  E-value=11  Score=17.12  Aligned_cols=44  Identities=20%  Similarity=0.156  Sum_probs=33.4

Q ss_pred             HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCCCEEEC
Q ss_conf             15587323999999738998889999999---97897685379944365
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~~W~lt  216 (262)
                      .++...+++.+||+.+|+  .-+.+|+.|   .+.|...+..+..|.|-
T Consensus        20 ~e~g~p~~a~~Iae~lgv--~kkeV~k~L~~Lkkeg~I~~~~r~~w~l~   66 (67)
T 2heo_A           20 SDDGGPVAIFQLVKKCQV--PKKTLNQVLYRLKKEDRVSSPSPKYWSIG   66 (67)
T ss_dssp             HHHCSCEEHHHHHHHHCS--CHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred             HHCCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             976896879999999788--88999999999987748058998620478


No 59 
>>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} (A:1-91)
Probab=59.33  E-value=11  Score=17.06  Aligned_cols=46  Identities=11%  Similarity=0.025  Sum_probs=35.8

Q ss_pred             HCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             15587323999999738998-88999999997897685379944365
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      +.....+...++|+.+|++. +.++.-..|...|+..+..+.-|.+.
T Consensus        44 l~~G~~l~e~~La~~~gvSr~tvr~Al~~L~~~Glv~~~~~~G~~Va   90 (91)
T 3c7j_A           44 LPSGTALRQQELATLFGVSRXPVREALRQLEAQSLLRVETHKGAVVA   90 (91)
T ss_dssp             SCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf             99919638999999988695499999999999642311233310110


No 60 
>>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* (A:1-90)
Probab=58.93  E-value=11  Score=17.01  Aligned_cols=56  Identities=20%  Similarity=0.087  Sum_probs=38.3

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH
Q ss_conf             666541558732399999973899-8889999999978976853799443657897543
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERG  223 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g  223 (262)
                      .++.+.  ++.++..+||+..|.. ..-.++-+.|...|+..+...+.|.+|+.+..+.
T Consensus        30 if~~l~--~~~~t~~eLa~~~g~~~~~l~rllr~l~~~g~~~e~~~~~y~~t~~s~~L~   86 (90)
T 3i53_A           30 VADHIA--AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLR   86 (90)
T ss_dssp             HHHHHH--TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGS
T ss_pred             HHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEECCHHHHHHC
T ss_conf             788972--799999999988692989999999999988917975898595588788761


No 61 
>>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} (A:)
Probab=58.23  E-value=11  Score=16.93  Aligned_cols=77  Identities=13%  Similarity=0.021  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHH
Q ss_conf             9999983023420013466654155873239999997389988-8999999997897685379--9----4436578975
Q gi|254780125|r  149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEE  221 (262)
Q Consensus       149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~  221 (262)
                      .......++...+-...... .......+++++||+.+++..+ .-+.-+-|.+.|+..|...  +    .-.||++|.+
T Consensus        27 ~~~~~~~gl~~~~~~iL~~l-~~~~~~~~t~~ela~~l~i~~~~vs~~v~~L~~~g~v~r~~~~~D~R~~~i~LT~~G~~  105 (127)
T 2frh_A           27 SLIKKEFSISFEEFAVLTYI-SENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRK  105 (127)
T ss_dssp             HHHHHTTCCCHHHHHHHHHH-HHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHH
T ss_pred             HHHHHHCCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCEEECHHHHH
T ss_conf             99887749899999999999-84689991899999997989868999999997020313442124676410006898999


Q ss_pred             HHHHH
Q ss_conf             43553
Q gi|254780125|r  222 RGGKM  226 (262)
Q Consensus       222 ~g~~~  226 (262)
                      .-...
T Consensus       106 ~~~~~  110 (127)
T 2frh_A          106 KIESL  110 (127)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99999


No 62 
>>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79)
Probab=58.14  E-value=9.6  Score=17.47  Aligned_cols=48  Identities=19%  Similarity=0.120  Sum_probs=31.9

Q ss_pred             HHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             541558732399999973899-888999999997897685379944365
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      .+.++.+.+++.+||+.|++. .+.++--.-|.+.|+...+.++-+.+.
T Consensus        29 ~L~~~~~~vt~~eLa~~l~VS~~Ti~rdl~~L~~~G~~i~~~~gGy~l~   77 (79)
T 1j5y_A           29 ILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLA   77 (79)
T ss_dssp             HHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEECC
T ss_pred             HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEEC
T ss_conf             9998699776999999979799999999999997799789737988977


No 63 
>>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} (A:1-88)
Probab=56.77  E-value=9.7  Score=17.43  Aligned_cols=48  Identities=13%  Similarity=0.114  Sum_probs=32.4

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHH----HHCCCE-EECCCCCEEECHHHHHHHHHH
Q ss_conf             23999999738998889999999----978976-853799443657897543553
Q gi|254780125|r  177 LTITQIGERLNPPQRARFLNKLL----LKRGLQ-VSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       177 l~~t~iak~l~~~~sa~~~N~lL----~~~g~q-~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      -+++..|+.|++  |+-++-+.|    ...|.. |.+.++.|.||+.|..+-...
T Consensus        16 gs~t~AA~~L~i--t~~avs~~i~~LE~~~g~~LF~R~~~~~~lT~~G~~l~~~~   68 (88)
T 1ixc_A           16 GNXAAAAKRLHV--SQPPITRQXQALEADLGVVLLERSHRGIELTAAGHAFLEDA   68 (88)
T ss_dssp             SSHHHHHHHHTC--CHHHHHHHHHHHHHHHTSCCBC-----CCBCHHHHHHHHHH
T ss_pred             CCHHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHCCCCCC
T ss_conf             999999999888--88999999999999869999998899427715031033343


No 64 
>>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} (A:30-109)
Probab=56.64  E-value=12  Score=16.76  Aligned_cols=56  Identities=20%  Similarity=0.153  Sum_probs=38.0

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH
Q ss_conf             666541558732399999973899-8889999999978976853799443657897543
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERG  223 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g  223 (262)
                      .++.+.  .+..++.++|+..|.. ..-.++-+.|...|+..+...+.|.+|+.+.-..
T Consensus        15 if~~L~--~~p~t~~eLA~~~g~~~~~l~rllr~l~~~gl~~e~~~~~y~~t~~s~~L~   71 (80)
T 1tw3_A           15 LVDHIL--AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLA   71 (80)
T ss_dssp             HHHHHH--TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGS
T ss_pred             HHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHC
T ss_conf             778974--699899999988790999999999999867969950898554698999860


No 65 
>>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} (A:1-118)
Probab=56.15  E-value=12  Score=16.71  Aligned_cols=65  Identities=11%  Similarity=0.052  Sum_probs=44.4

Q ss_pred             CHHHHHHHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             01346665415587323999999738998-889999999978976853799------443657897543553
Q gi|254780125|r  162 AMDIKHLPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      +.......++...+.+++++||+.+++.. +...+-+-|.+.|+..|....      .-.||++|.+.-...
T Consensus        33 ~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~  104 (118)
T 3bja_A           33 YVQFGVIQVLAKSGKVSXSKLIENXGCVPSNXTTXIQRXKRDGYVXTEKNPNDQRETLVYLTKKGEETKKQV  104 (118)
T ss_dssp             HHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf             999999999998699899999998685746187999998431154876458888405888898899999999


No 66 
>>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} (A:)
Probab=55.42  E-value=13  Score=16.63  Aligned_cols=54  Identities=17%  Similarity=0.198  Sum_probs=40.7

Q ss_pred             CCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC------CEEECHHHHHHHHHHC
Q ss_conf             58732399999973899888999999---9978976853799------4436578975435530
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG------GYRPTPKGEERGGKMC  227 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~  227 (262)
                      ..+.....++.+.+. |+|.+.+++.   |.+.|+..|....      .+.||++|....+.+.
T Consensus        45 ~~g~~rf~el~~~l~-giS~~~Ls~rLk~L~~~Glv~R~~~~~~p~~v~Y~LT~~G~~l~~il~  107 (131)
T 1yyv_A           45 RDGTHRFSDLRRXXG-GVSEXXLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA  107 (131)
T ss_dssp             GGCCEEHHHHHHHST-TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             739986999998833-310588999999999779315552588873499997087999999999


No 67 
>>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131)
Probab=55.03  E-value=10  Score=17.28  Aligned_cols=49  Identities=18%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             CCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCE---EECHHHHH
Q ss_conf             58732399999973899888-999999997897685379944---36578975
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGY---RPTPKGEE  221 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W---~lt~kg~~  221 (262)
                      ..+.+++++||+.+|++.++ ..--+.|.+.|+..+...|+|   .+++++..
T Consensus        68 ~~~~~~~~eLa~~l~is~~tvS~HL~~L~~aGlV~~~r~G~~~~Y~l~~~~~~  120 (131)
T 3f6v_A           68 TSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLA  120 (131)
T ss_dssp             GGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECHHHHH
T ss_conf             82991799999998878778999875498699357898779899998869999


No 68 
>>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} (A:1-133)
Probab=54.58  E-value=13  Score=16.54  Aligned_cols=58  Identities=19%  Similarity=0.110  Sum_probs=42.1

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf             54155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM  226 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~  226 (262)
                      .+.+..+-+++++||+.+++..+ ...+-..|.+.|+..|...      ....||++|...-...
T Consensus        55 ~l~~~~~~~t~~~la~~l~i~~~~vs~~i~~Le~~GlI~r~~~~~DrR~~~i~lT~~G~~~~~~~  119 (133)
T 3boq_A           55 QLARNPDGLSXGKLSGALKVTNGNVSGLVNRLIKDGXVVKAXSADDRRSFSAKLTDAGLTTFKQA  119 (133)
T ss_dssp             HHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHH
T ss_pred             HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             99858999889999988777898999999999868886761066767514777898999999999


No 69 
>>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} (A:35-99)
Probab=54.45  E-value=13  Score=16.52  Aligned_cols=44  Identities=18%  Similarity=0.082  Sum_probs=29.4

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC
Q ss_conf             66654155873239999997389988-899999999789768537
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV  209 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~  209 (262)
                      .....+...+-+++++||+.+++..+ ..++-+-|.+.|+..|.+
T Consensus         8 ~vL~~l~~~~~~t~~ela~~~~~~~~~vsr~i~~L~~~g~I~r~~   52 (65)
T 2nnn_A            8 AALVRLGETGPCPQNQLGRLTAXDAATIKGVVERLDKRGLIQRSA   52 (65)
T ss_dssp             HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf             999999987993999999987878531428999998678804645


No 70 
>>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} (A:1-77)
Probab=54.18  E-value=13  Score=16.49  Aligned_cols=43  Identities=21%  Similarity=0.162  Sum_probs=29.7

Q ss_pred             CCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             87323999999738998889-99999997897685379944365
Q gi|254780125|r  174 DEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       174 ~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      .+.+++++||+.+|++.+.. .--+.|.++|+......|.|..|
T Consensus        26 ~~~~~~~ela~~l~is~stvs~HL~~L~~aglV~~~k~g~~~~y   69 (77)
T 2p4w_A           26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGR   69 (77)
T ss_dssp             HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBC
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf             19988999999989099999999999998897388863237898


No 71 
>>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} (A:1-77)
Probab=53.47  E-value=14  Score=16.42  Aligned_cols=40  Identities=15%  Similarity=0.117  Sum_probs=30.6

Q ss_pred             CCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCE
Q ss_conf             8732-399999973899-888999999997897685379944
Q gi|254780125|r  174 DEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGY  213 (262)
Q Consensus       174 ~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W  213 (262)
                      ...+ +..++|+.++++ .+.++.-+.|.+.|+.++..+|.+
T Consensus        33 G~~lPser~La~~~~VSr~tvr~Al~~L~~~Gli~~~g~G~~   74 (77)
T 3f8m_A           33 GDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTV   74 (77)
T ss_dssp             TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEE
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCEEE
T ss_conf             786846999999979699999999999997077620485169


No 72 
>>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} (A:1-124)
Probab=52.85  E-value=14  Score=16.35  Aligned_cols=74  Identities=15%  Similarity=0.056  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHH
Q ss_conf             99983023420013466654155873239999997389988-8999999997897685379------9443657897543
Q gi|254780125|r  151 VTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERG  223 (262)
Q Consensus       151 ~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g  223 (262)
                      .....++...+-....+  +.....-+++++||+.+++..+ ...+-+-|.+.|+..|...      ..-.||++|.+.-
T Consensus        31 ~~~~~~lt~~q~~iL~~--l~~~~~~~t~~ela~~~~~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT~~G~~~~  108 (124)
T 3fm5_A           31 ALVPTGLRVRSYSVLVL--ACEQAEGVNQRGVAATXGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR  108 (124)
T ss_dssp             HHGGGTCCHHHHHHHHH--HHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH
T ss_pred             HHHHCCCCHHHHHHHHH--HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHH
T ss_conf             99884989999999999--9985989899999999788777788999999986985651488767746878898899999


Q ss_pred             HHH
Q ss_conf             553
Q gi|254780125|r  224 GKM  226 (262)
Q Consensus       224 ~~~  226 (262)
                      ...
T Consensus       109 ~~~  111 (124)
T 3fm5_A          109 DDA  111 (124)
T ss_dssp             HHH
T ss_pred             HHH
T ss_conf             999


No 73 
>>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* (B:170-196,B:403-483)
Probab=52.70  E-value=14  Score=16.34  Aligned_cols=46  Identities=4%  Similarity=0.015  Sum_probs=39.2

Q ss_pred             HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             1558732399999973899888999999997897685379944365
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      ...+-.++...+.+.+|+..+...+-++|...|+......+.|..+
T Consensus        30 ~~~~I~l~~~~i~klLG~~is~e~i~~iL~rLgf~v~~~~d~~~V~   75 (108)
T 2rhq_B           30 FVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVN   75 (108)
T ss_dssp             SEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEE
T ss_pred             CCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             2100013089998652898641024689985233132269769998


No 74 
>>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} (A:)
Probab=52.19  E-value=14  Score=16.28  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=32.8

Q ss_pred             HHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC---CEEECH
Q ss_conf             665415587323999999738998889999999---978976853799---443657
Q gi|254780125|r  167 HLPSSDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG---GYRPTP  217 (262)
Q Consensus       167 ~d~~~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~---~W~lt~  217 (262)
                      +..-+...+.+++-+|||.||+  +-+.+|+.|   .+.|-.++ +++   .|.++.
T Consensus        22 ~L~~~~~g~~~tA~~LAk~lg~--~Kk~vN~~LY~L~k~g~v~~-~~~~PP~W~l~~   75 (77)
T 1qgp_A           22 FLEELGEGKATTAHDLSGKLGT--PKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAV   75 (77)
T ss_dssp             HHHHHCSSSCEEHHHHHHHHCC--CHHHHHHHHHHHHHHTSEEE-ECSSSCEEEECC
T ss_pred             HHHHCCCCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEE-CCCCCCCEEECC
T ss_conf             9996589876029999999698--88888999999998789530-699899326057


No 75 
>>2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} (A:17-95)
Probab=52.01  E-value=14  Score=16.27  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=39.4

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH
Q ss_conf             666541558732399999973899-8889999999978976853799443657897543
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERG  223 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g  223 (262)
                      .+|.+.  ++..++.+||..++.. .....+=+.|...|+.. +..+.|.+|+.+..+-
T Consensus        15 lfd~L~--~~p~t~~~La~~~g~~~~~~~~lLr~L~~~g~~~-~~~~~y~~t~~s~~~l   70 (79)
T 2r3s_A           15 VFTAIS--QGIESSQSLAQKCQTSERGXRXLCDYLVIIGFXT-KQAEGYRLTSDSAXFL   70 (79)
T ss_dssp             HHHHHT--TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEECHHHHHHT
T ss_pred             HHHHHH--CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEE-ECCCCCCCCHHHHHHC
T ss_conf             789984--7999999999872989899999999999779148-4188764598788434


No 76 
>>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} (A:28-122)
Probab=51.72  E-value=14  Score=16.24  Aligned_cols=48  Identities=19%  Similarity=0.146  Sum_probs=31.9

Q ss_pred             HHCCCCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             415587323999999738998889-999999978976853799443657
Q gi|254780125|r  170 SSDNDEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       170 ~~~~~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      .+...+-.++.+|++.+|+..++. .--+.|.+.|+..+...|+|..|.
T Consensus        23 ~L~~~~~~~v~eL~~~l~is~s~vs~HL~~L~~~GlV~~~~~g~~~~y~   71 (95)
T 1u2w_A           23 ALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYS   71 (95)
T ss_dssp             HHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred             HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEE
T ss_conf             9988799069999988845700799999999988925899988899999


No 77 
>>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (B:166-190,B:401-478)
Probab=49.90  E-value=15  Score=16.05  Aligned_cols=71  Identities=14%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHH
Q ss_conf             15587323999999738998889999999978976853799443657897543553047534688331167545017765
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKMCDVPMQHVEGSTQQLKWNSNLLVS  250 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~~~~p~~~~g~~~~q~~w~~~v~~~  250 (262)
                      ...+-.++...+.+.+|+..+...+-..|...|+.+...++.|..+            .|..|.+     +.-..++++.
T Consensus        25 ~~~~i~l~~~~i~~iLG~~l~~e~i~~~L~rLGf~v~~~~~~~~V~------------vPsyR~D-----I~~~~DiIEE   87 (103)
T 1b7y_B           25 APEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVT------------PPSHRLD-----LRLEEDLVEE   87 (103)
T ss_dssp             CCCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEESSSSSEEEE------------CCTTCCS-----CCSHHHHHHH
T ss_pred             CCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEECCCCCEEEE------------ECHHHHH-----HCCCCCHHHH
T ss_conf             0014314489997412210020167899975487220588737999------------6303565-----5466107888


Q ss_pred             HHHHHCCC
Q ss_conf             65310235
Q gi|254780125|r  251 FLQNELIN  258 (262)
Q Consensus       251 ~~~~~~~~  258 (262)
                      +.+.-+.|
T Consensus        88 IaR~yGyd   95 (103)
T 1b7y_B           88 VARIQGYE   95 (103)
T ss_dssp             HHHHHCGG
T ss_pred             HHHHHCCC
T ss_conf             88770757


No 78 
>>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} (A:)
Probab=49.83  E-value=15  Score=16.04  Aligned_cols=55  Identities=20%  Similarity=0.152  Sum_probs=40.9

Q ss_pred             CCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCC------CCEEECHHHHHHHHHHCC
Q ss_conf             587323999999738998889999999---97897685379------944365789754355304
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVS------GGYRPTPKGEERGGKMCD  228 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~------~~W~lt~kg~~~g~~~~~  228 (262)
                      ..|.....++.+.+. |+|.+.++..|   .+.|+..|+.-      -.+.||++|...-+.+..
T Consensus        32 ~~g~~rf~el~r~l~-giS~~~Ls~rLk~L~~~gli~r~~~~~~p~~v~Y~LT~~G~~L~pil~~   95 (112)
T 1z7u_A           32 FQGTKRNGELXRALD-GITQRVLTDRLREXEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSS   95 (112)
T ss_dssp             HHSCBCHHHHHHHST-TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH
T ss_conf             729987999998762-2002169998989996886124325788863040434758799999999


No 79 
>>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} (A:1-83,A:191-233)
Probab=49.68  E-value=13  Score=16.51  Aligned_cols=28  Identities=7%  Similarity=0.144  Sum_probs=22.1

Q ss_pred             HHCCCHHHHHHHHHHHH-HHHHHHHHHCC
Q ss_conf             85799657999998889-78999996077
Q gi|254780125|r   79 VKSTLPSAQKFERWVFE-EVLPTLRKTGS  106 (262)
Q Consensus        79 ~~s~~p~A~~F~~Wv~~-eVLPsIRktG~  106 (262)
                      -.|..|+|+.|-+||++ |-.--++|+|-
T Consensus        95 ~~~~~~~a~~f~~fl~s~~a~~i~~~~Gf  123 (126)
T 1amf_A           95 EGHNNATVKAFYDYLKGPQAAEIFKRYGF  123 (126)
T ss_dssp             TTCCSHHHHHHHHHHTSHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHCCHHHHHHHHHCCC
T ss_conf             79998999999999789999999998492


No 80 
>>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:)
Probab=48.07  E-value=8.9  Score=17.67  Aligned_cols=45  Identities=18%  Similarity=0.016  Sum_probs=30.1

Q ss_pred             CCCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH
Q ss_conf             587323999999738998889-999999978976853799443657
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP  217 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~  217 (262)
                      ..+-.++++||+.+|++.+.. .--+.|.+.|+..+...|.|..|.
T Consensus        31 ~~~~~~v~eLa~~l~~s~stvS~HL~~L~~~glV~~~~~G~~~~Y~   76 (118)
T 2jsc_A           31 LDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYA   76 (118)
T ss_dssp             HTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEE
T ss_pred             HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE
T ss_conf             8199479999999885665699999999888921799988989999


No 81 
>>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88)
Probab=47.65  E-value=17  Score=15.82  Aligned_cols=60  Identities=22%  Similarity=0.140  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC
Q ss_conf             9999983023420013466654155873239999997389988-8999999997897685379
Q gi|254780125|r  149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS  210 (262)
Q Consensus       149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~  210 (262)
                      .......++...+-...+.  +....+.+++++||+.+++..+ .-.+-+.|.+.||..|...
T Consensus        16 ~~~l~~~gls~~q~~vL~~--l~~~~g~~t~~~La~~~~~~~~~vs~~i~~Le~~G~I~r~~~   76 (88)
T 1ku9_A           16 SELAKIHGLNKSVGAVYAI--LYLSDKPLTISDIXEELKISKGNVSXSLKKLEELGFVRKVWI   76 (88)
T ss_dssp             HHHHHHTTCCHHHHHHHHH--HHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred             HHHHHHCCCCHHHHHHHHH--HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf             9999981979999999999--997698969999997848665149999999998899898528


No 82 
>>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78)
Probab=47.10  E-value=17  Score=15.76  Aligned_cols=43  Identities=19%  Similarity=0.167  Sum_probs=31.9

Q ss_pred             CCCCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEE
Q ss_conf             558732-399999973899-8889999999978976853799443
Q gi|254780125|r  172 DNDEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYR  214 (262)
Q Consensus       172 ~~~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~  214 (262)
                      .....+ +..++++.+|++ .+.++.-..|.+.|+.++..++-+.
T Consensus        23 ~~G~~LPse~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~   67 (78)
T 2di3_A           23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPR   67 (78)
T ss_dssp             CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGG
T ss_pred             CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCC
T ss_conf             981999109999999895999999999998860803416797775


No 83 
>>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} (A:43-106)
Probab=46.78  E-value=17  Score=15.73  Aligned_cols=41  Identities=10%  Similarity=-0.032  Sum_probs=28.3

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC
Q ss_conf             54155873239999997389988-899999999789768537
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV  209 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~  209 (262)
                      .++...+-+++++||+.+++..+ .-..-+-|.+.|+..|..
T Consensus        10 ~~l~~~~~~t~~ela~~~~~~~~t~s~~i~~L~~~glI~r~~   51 (64)
T 2nyx_A           10 VILSNHGPINLATLATLLGVQPSATGRXVDRLVGAELIDRLP   51 (64)
T ss_dssp             HHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEE
T ss_conf             999857997999999998887877799997350186435653


No 84 
>>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:66-117)
Probab=46.39  E-value=17  Score=15.69  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=29.2

Q ss_pred             HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEE
Q ss_conf             4155873239999997389988899999999789768
Q gi|254780125|r  170 SSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQV  206 (262)
Q Consensus       170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~  206 (262)
                      +++.....+..+||+.||  .+...+-.-|.+.|+..
T Consensus        15 lie~D~~~TtreiA~~Ln--vs~~TI~~hLk~iG~v~   49 (52)
T 3hot_A           15 LLDEDDAQTQKQLAEQLE--VSQQAVSNRLREMGKIQ   49 (52)
T ss_dssp             HHHHCSCCCHHHHHHHTT--SCHHHHHHHHHHTTCEE
T ss_pred             HHHHCCCCHHHHHHHHHC--CCHHHHHHHHHHCCCEE
T ss_conf             999664001899998856--48889999999728723


No 85 
>>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482} (A:30-78)
Probab=45.35  E-value=8  Score=18.01  Aligned_cols=39  Identities=8%  Similarity=0.054  Sum_probs=29.8

Q ss_pred             CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             399999973899-888999999997897685379944365
Q gi|254780125|r  178 TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       178 ~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      +..++|+.+++. .+.++..+.|.+.|+.++..+.-+.+.
T Consensus         8 s~r~la~~~~vsr~Tv~~a~~~L~~~G~i~~~~g~G~fV~   47 (49)
T 3ic7_A            8 SVREYASIVEVNANTVXRSYEYLQSQEVIYNKRGIGFFVA   47 (49)
T ss_dssp             CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEEEC
T ss_pred             CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCEEEEC
T ss_conf             8999998759399999999999998896799638778977


No 86 
>>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A (A:1-91)
Probab=45.00  E-value=18  Score=15.55  Aligned_cols=48  Identities=10%  Similarity=0.018  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHH----HHCCCE-EECCCCCEEECHHHHHHHHHH
Q ss_conf             23999999738998889999999----978976-853799443657897543553
Q gi|254780125|r  177 LTITQIGERLNPPQRARFLNKLL----LKRGLQ-VSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       177 l~~t~iak~l~~~~sa~~~N~lL----~~~g~q-~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      -+++..|+.|++  |+-++-+.|    ...|.. +.+.++.+.||+.|..+-...
T Consensus        17 ~s~s~AA~~L~i--sq~avS~~i~~LE~~~g~~Lf~R~~~~~~lT~~G~~l~~~~   69 (91)
T 3fxq_A           17 GSLRAAAQLLHL--SQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHA   69 (91)
T ss_dssp             SCHHHHHHHTTC--CHHHHHHHHHHHHHHHTSCSEEECSSSEEECHHHHHHHHHH
T ss_pred             CCHHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHH
T ss_conf             999999999898--88999999999999859999998499158997375221343


No 87 
>>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} (A:1-79)
Probab=44.66  E-value=18  Score=15.51  Aligned_cols=43  Identities=19%  Similarity=0.049  Sum_probs=29.3

Q ss_pred             CCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             8732399999973899888-999999997897685379944365
Q gi|254780125|r  174 DEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       174 ~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      ++..++.+|++.+|++.++ -.--+.|.+.|+......|+|..|
T Consensus        32 ~~~~~~~ela~~l~is~~tvS~HL~~L~~aglv~~~~~G~~~~Y   75 (79)
T 2oqg_A           32 RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRY   75 (79)
T ss_dssp             HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred             CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEEEE
T ss_conf             49987447798868998899999989998897703666898899


No 88 
>>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} (A:19-82)
Probab=43.59  E-value=19  Score=15.40  Aligned_cols=42  Identities=26%  Similarity=0.451  Sum_probs=27.8

Q ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCEEECC-CCCEEE
Q ss_conf             55873239999997389988899999---999789768537-994436
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQRARFLNK---LLLKRGLQVSKV-SGGYRP  215 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~sa~~~N~---lL~~~g~q~Rk~-~~~W~l  215 (262)
                      -.+.-+.+++|++.||+  |++-+..   -|.+.|+..|.- ...|.=
T Consensus        12 lek~~m~i~eI~keLgl--SeR~VRe~v~~L~r~GllkRelv~~GWlG   57 (64)
T 1sfx_A           12 LERGGXRVSEIARELDL--SARFVRDRLKVLLKRGFVRREIVEKGWVG   57 (64)
T ss_dssp             HHHCCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEEEEESSSEE
T ss_pred             HCCCCCCHHHHHHHHCC--CCCHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             80488879999999756--70189999999995999798742578865


No 89 
>>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} (A:)
Probab=43.47  E-value=19  Score=15.39  Aligned_cols=51  Identities=22%  Similarity=0.079  Sum_probs=38.3

Q ss_pred             CCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCEEECCCCCEEECHHHHHHHHHHC
Q ss_conf             8732399999973899888999---99999789768537994436578975435530
Q gi|254780125|r  174 DEYLTITQIGERLNPPQRARFL---NKLLLKRGLQVSKVSGGYRPTPKGEERGGKMC  227 (262)
Q Consensus       174 ~~~l~~t~iak~l~~~~sa~~~---N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~~  227 (262)
                      ..-...|.|+..+|.  |-+.+   -..|.+.|+.. ...+...+|++|.++-..+.
T Consensus        18 ~~~i~rt~L~~~~nL--s~~~~~~~l~~L~~~GLI~-~~~~~y~lT~kG~~~l~~l~   71 (95)
T 1r7j_A           18 KSGSPKTRIMYGANL--SYALTGRYIKMLMDLEIIR-QEGKQYMLTKKGEELLEDIR   71 (95)
T ss_dssp             TTCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEE-EETTEEEECHHHHHHHHHHH
T ss_pred             HCCCCHHHHHHHCCC--CHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHH
T ss_conf             669986488998099--9999999999999888925-26984798751899999999


No 90 
>>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3} (A:278-348)
Probab=43.19  E-value=19  Score=15.36  Aligned_cols=42  Identities=14%  Similarity=0.052  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             732399999973899888999999997897685379944365
Q gi|254780125|r  175 EYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       175 ~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      -.++...+.+.+|+..+...+.+.|...|+.....++.|..+
T Consensus         6 i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~v~~~~~~~~V~   47 (71)
T 2cxi_A            6 FEVELDYIRKLSGLELNDGEIKELLEKXXYEVEISRGRAKLK   47 (71)
T ss_dssp             EEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEE
T ss_pred             EEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCEEEEE
T ss_conf             997899998885886799999999998799799649839998


No 91 
>>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} (A:23-111)
Probab=42.55  E-value=20  Score=15.30  Aligned_cols=53  Identities=17%  Similarity=0.248  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC--CEEECHHHHHHHHHHCC
Q ss_conf             732399999973899888999999---9978976853799--44365789754355304
Q gi|254780125|r  175 EYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG--GYRPTPKGEERGGKMCD  228 (262)
Q Consensus       175 ~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~--~W~lt~kg~~~g~~~~~  228 (262)
                      ......++.+.+. ++|.+.+++.   |.+.|+..|....  .+.||++|++..+....
T Consensus        19 ~~~rF~el~~~i~-~is~~~Ls~~Lk~L~~~glv~r~~p~~veY~LT~~G~~l~~~l~~   76 (89)
T 3df8_A           19 TRQNFNDIRSSIP-GISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGXNVRNSLXP   76 (89)
T ss_dssp             SCBCHHHHHHTST-TCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECCCHHHHHHHHHH
T ss_conf             9887999985487-776036999999999856440127996478759478889999999


No 92 
>>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} (A:1-88)
Probab=42.16  E-value=20  Score=15.26  Aligned_cols=51  Identities=20%  Similarity=0.182  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHCCCCC--HHHHHHHHHHCCCEE--ECCCCCEEECHHHHHHHHHH
Q ss_conf             3239999997389988--899999999789768--53799443657897543553
Q gi|254780125|r  176 YLTITQIGERLNPPQR--ARFLNKLLLKRGLQV--SKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       176 ~l~~t~iak~l~~~~s--a~~~N~lL~~~g~q~--Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      +-+++..|+.|+++.+  .+.+..|=...|...  |..++.+.||+.|+.+-...
T Consensus        18 ~gs~s~AA~~L~isq~avs~~i~~LE~~lg~~Lf~R~~~r~~~lT~~G~~l~~~~   72 (88)
T 3fzv_A           18 CGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKA   72 (88)
T ss_dssp             SSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCCC
T ss_conf             0999999999887888999999999998299689977997044346651453344


No 93 
>>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:)
Probab=41.80  E-value=20  Score=15.22  Aligned_cols=43  Identities=19%  Similarity=0.229  Sum_probs=30.6

Q ss_pred             HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC--CEEE
Q ss_conf             15587323999999738998889999999---978976853799--4436
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG--GYRP  215 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~--~W~l  215 (262)
                      +-..+..++-+|||.||  ++-+.+|+.|   .+.|..++..+.  .|.+
T Consensus        24 L~~~~~~tA~~lAk~Lg--~~Kk~VNr~LY~L~~~G~v~~~~~~PP~W~l   71 (75)
T 1sfu_A           24 LNTNDYTTAISLSNRLK--INKKKINQQLYKLQKEDTVKMVPSNPPKWFK   71 (75)
T ss_dssp             SCTTCEECHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEECCSSCEEEE
T ss_pred             CCCCCCCHHHHHHHHHC--CHHHHHHHHHHHHHHCCEEEEECCCCCHHHH
T ss_conf             87544221999998863--0087888999999868965442499936765


No 94 
>>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} (A:1-89)
Probab=41.80  E-value=20  Score=15.22  Aligned_cols=51  Identities=16%  Similarity=0.131  Sum_probs=36.8

Q ss_pred             HHHHHHCCCCCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCEEECCCCCEEECHHHH
Q ss_conf             66654155873239999997389988899---99999978976853799443657897
Q gi|254780125|r  166 KHLPSSDNDEYLTITQIGERLNPPQRARF---LNKLLLKRGLQVSKVSGGYRPTPKGE  220 (262)
Q Consensus       166 ~~d~~~~~~~~l~~t~iak~l~~~~sa~~---~N~lL~~~g~q~Rk~~~~W~lt~kg~  220 (262)
                      .+|.+.  .+..++.++|+..|.  ....   +-+.|...|+..+...+.|.+|+.+.
T Consensus        33 ifd~l~--~g~~t~~eLa~~~g~--~~~~l~rllr~l~~~g~~~e~~~~~y~~t~~s~   86 (89)
T 2ip2_A           33 LADLIE--SGIDSDETLAAAVGS--DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSH   86 (89)
T ss_dssp             HHHHHH--TTCCSHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHH
T ss_pred             HHHHHH--CCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH
T ss_conf             878985--699999999988594--989999999999868976753675232580676


No 95 
>>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} (A:1-82)
Probab=40.63  E-value=21  Score=15.10  Aligned_cols=46  Identities=13%  Similarity=-0.008  Sum_probs=36.0

Q ss_pred             HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             155873239999997389988-8999999997897685379944365
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      ......+.-.++|+.++++.+ .++.-..|...|+..+..+..|.+.
T Consensus        34 ~~~G~~l~e~~La~~~~vSr~~vr~Al~~L~~~Gli~~~~~~G~~V~   80 (82)
T 3ihu_A           34 FVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIR   80 (82)
T ss_dssp             SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEEC
T ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEE
T ss_conf             99919669999999989888999999999997898476358825997


No 96 
>>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} (A:142-183)
Probab=40.19  E-value=18  Score=15.67  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=18.2

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             23999999738998889999999978
Q gi|254780125|r  177 LTITQIGERLNPPQRARFLNKLLLKR  202 (262)
Q Consensus       177 l~~t~iak~l~~~~sa~~~N~lL~~~  202 (262)
                      +.+++||+.||++.  ..+.+.|.+.
T Consensus        18 ~g~t~IAk~LgI~R--~sVYriL~~~   41 (42)
T 1gdt_A           18 LGASHISKTMNIAR--STVYKVINES   41 (42)
T ss_dssp             CCHHHHHHHHTCCH--HHHHHHHHSC
T ss_pred             CCHHHHHHHHCCCH--HHHHHHHHHC
T ss_conf             99999999989299--9999999704


No 97 
>>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121)
Probab=39.52  E-value=22  Score=14.99  Aligned_cols=55  Identities=24%  Similarity=0.061  Sum_probs=38.7

Q ss_pred             CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             55873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      -+.+-+++++|++.+++..+ ...+-+.|.+.|+..|....      .-.||++|.++....
T Consensus        46 l~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~kG~~~~~~~  107 (121)
T 2gxg_A           46 TSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG  107 (121)
T ss_dssp             HTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHEECCCHHHHHHHHHH
T ss_conf             98599799999999897987999999999878882342365556401001457689999999


No 98 
>>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} (A:1-139)
Probab=38.81  E-value=23  Score=14.91  Aligned_cols=65  Identities=15%  Similarity=0.036  Sum_probs=41.8

Q ss_pred             CHHHHHHHHH-CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             0134666541-55873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  162 AMDIKHLPSS-DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       162 pk~~~~d~~~-~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      +........+ ....-+++++||+.+++..+ ...+-+.|.+.|+..|..+.      .-.||++|..+-...
T Consensus        53 ~~~~~iL~~l~~~~~~~t~~~La~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~  125 (139)
T 3deu_A           53 QTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM  125 (139)
T ss_dssp             HHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECHHHHHHHHHH
T ss_conf             9999999999976989999999999896998999999999969887986206898757889898899999999


No 99 
>>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135)
Probab=38.13  E-value=23  Score=14.84  Aligned_cols=34  Identities=12%  Similarity=0.238  Sum_probs=23.7

Q ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCEEE
Q ss_conf             55873239999997389988899999---9997897685
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQRARFLNK---LLLKRGLQVS  207 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~sa~~~N~---lL~~~g~q~R  207 (262)
                      .....-++..||+.+|  +|.+.+++   .|.+.|+..+
T Consensus        32 ~g~~~pS~~~iA~~~g--~s~~tV~~~l~~L~~~Gli~~   68 (120)
T 2v79_A           32 KGSYFPTPNQLQEGMS--ISVEECTNRLRMFIQKGFLFI   68 (120)
T ss_dssp             TTCCSCCHHHHHTTSS--SCHHHHHHHHHHHHHHTSCEE
T ss_pred             CCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEE
T ss_conf             6999989999999969--899999999999998899799


No 100
>>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} (A:1-122)
Probab=37.68  E-value=23  Score=14.80  Aligned_cols=54  Identities=19%  Similarity=0.086  Sum_probs=36.4

Q ss_pred             CCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH
Q ss_conf             5873239999997389988-89999999978976853799------443657897543553
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM  226 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~  226 (262)
                      ...-+++++||+.+++..+ ....-+-|.+.|+..|..+.      .-.||++|..+-...
T Consensus        47 ~~~~~t~~ela~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~  107 (122)
T 3f3x_A           47 SEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEA  107 (122)
T ss_dssp             HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHCCCCHHHHHHHHHH
T ss_conf             9299199999999797886899999999967880131355455301213389899999999


No 101
>>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} (A:29-94)
Probab=37.68  E-value=23  Score=14.80  Aligned_cols=42  Identities=14%  Similarity=-0.036  Sum_probs=28.2

Q ss_pred             HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC
Q ss_conf             654155873239999997389988-899999999789768537
Q gi|254780125|r  168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV  209 (262)
Q Consensus       168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~  209 (262)
                      ...+...+-+++++||+.+++..+ .-.+-+-|.+.|+..|..
T Consensus        11 L~~l~~~~~~t~~~la~~~~~s~~~~s~~i~~L~~~Glv~r~~   53 (66)
T 2a61_A           11 LQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP   53 (66)
T ss_dssp             HHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEC
T ss_conf             9999876998999999882989889999999997246866423


No 102
>>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54)
Probab=37.13  E-value=24  Score=14.74  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=20.7

Q ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             7323999999738998889999999978
Q gi|254780125|r  175 EYLTITQIGERLNPPQRARFLNKLLLKR  202 (262)
Q Consensus       175 ~~l~~t~iak~l~~~~sa~~~N~lL~~~  202 (262)
                      .-++-.+||+.+|  .|-..++++|.++
T Consensus        20 ~gltQ~eIA~~lg--iSR~~VsRlL~~A   45 (54)
T 2w48_A           20 QDMTQAQIARELG--IYRTTISRLLKRG   45 (54)
T ss_dssp             SCCCHHHHHHHTT--CCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHC--CCHHHHHHHHHHH
T ss_conf             4999999999869--8999999999999


No 103
>>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:35-101)
Probab=36.83  E-value=24  Score=14.71  Aligned_cols=38  Identities=13%  Similarity=0.036  Sum_probs=26.5

Q ss_pred             CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC
Q ss_conf             55873239999997389988-899999999789768537
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV  209 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~  209 (262)
                      .+..-+++++||+.+++..+ ...+-+-|.+.|+..|..
T Consensus        14 ~~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~G~I~r~~   52 (67)
T 2fbh_A           14 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA   52 (67)
T ss_dssp             HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf             759996599999998978988999999997656614404


No 104
>>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46)
Probab=36.57  E-value=24  Score=14.68  Aligned_cols=24  Identities=8%  Similarity=0.166  Sum_probs=20.1

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             32399999973899888999999997
Q gi|254780125|r  176 YLTITQIGERLNPPQRARFLNKLLLK  201 (262)
Q Consensus       176 ~l~~t~iak~l~~~~sa~~~N~lL~~  201 (262)
                      -++.+++|+.+|  +|...+|.++..
T Consensus        21 gis~~~lA~~lg--vs~~~is~ii~G   44 (46)
T 2ict_A           21 NVSLREFARAXE--IAPSTASRLLTG   44 (46)
T ss_dssp             TCCHHHHHHHHT--CCHHHHHHHHHT
T ss_pred             CCCHHHHHHHHH--HHHHHHHHHHCC
T ss_conf             999999999997--778999999806


No 105
>>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* (A:)
Probab=35.92  E-value=25  Score=14.61  Aligned_cols=50  Identities=10%  Similarity=0.136  Sum_probs=25.4

Q ss_pred             CCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             31068971877999998579965799999888978999996077577533
Q gi|254780125|r   63 IQKVRIISEPDVYRLLVKSTLPSAQKFERWVFEEVLPTLRKTGSYSVEAP  112 (262)
Q Consensus        63 ~~~~~~i~E~gly~Li~~s~~p~A~~F~~Wv~~eVLPsIRktG~Y~~~~~  112 (262)
                      -+....++|.-|-+..--|+.+.-+.++.-...-+|-..+.-|.|..+..
T Consensus        38 l~pG~~Lpe~~La~~~gVSR~tVReAl~~L~~eGli~~~~g~g~~V~~~~   87 (226)
T 3dbw_A           38 LKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVD   87 (226)
T ss_dssp             SCTTCBCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCCC
T ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCH
T ss_conf             99809779999999989199999999999997897685369865455312


No 106
>>1fy7_A ESA1 histone acetyltransferase; coenzyme A; HET: COA; 2.00A {Saccharomyces cerevisiae} (A:156-278)
Probab=35.22  E-value=26  Score=14.54  Aligned_cols=73  Identities=10%  Similarity=0.036  Sum_probs=45.3

Q ss_pred             HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEEC--HHHHHHHHHHCCCCCCCCCCCCEEEEECHHH
Q ss_conf             41558732399999973899888999999997897685379944365--7897543553047534688331167545017
Q gi|254780125|r  170 SSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPT--PKGEERGGKMCDVPMQHVEGSTQQLKWNSNL  247 (262)
Q Consensus       170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt--~kg~~~g~~~~~~p~~~~g~~~~q~~w~~~v  247 (262)
                      +.+.++.+++.+|++.-+  +....+-.-|...|+.. ...+++.+.  .+..+.-.....++.-.  -....+.|+|-|
T Consensus        49 L~~~~~~isi~dis~~T~--i~~~DIi~tL~~l~~l~-~~~~~~~i~~~~~~i~~~~~~~~k~~~~--idp~~L~W~P~v  123 (123)
T 1fy7_A           49 LVEHQKEITIDEISSMTS--MTTTDILHTAKTLNILR-YYKGQHIIFLNEDILDRYNRLKAKKRRT--IDPNRLIWKPPV  123 (123)
T ss_dssp             HHHTCSEEEHHHHHHHHC--BCHHHHHHHHHHHTCEE-EETTEEEEECCHHHHHHHHHHHHTCCCC--CCGGGBCCCCC-
T ss_pred             HHHHCCCEEHHHHHHHHC--CCHHHHHHHHHHHCHHH-HHCCCEEEEECHHHHHHHHHHCCCCCCC--CCCCCCEECCCC
T ss_conf             986067167999764306--64798999998837776-3368679992999999999864899974--385632438999


No 107
>>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} (A:1-75)
Probab=34.82  E-value=26  Score=14.50  Aligned_cols=33  Identities=12%  Similarity=0.144  Sum_probs=22.4

Q ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEE
Q ss_conf             55873239999997389988899999999789768
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQV  206 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~  206 (262)
                      ....+|+..++|+.||+  +..++.+||.+..+.-
T Consensus        27 ~de~~LtlpevAe~Lgv--~vtrV~~Lird~~Lia   59 (75)
T 2kfs_A           27 PDEPTYDLPRVAELLGV--PVSKVAQQLREGHLVA   59 (75)
T ss_dssp             TTSCEEEHHHHHHHHTC--CHHHHHHHHHTTSCCC
T ss_pred             CCCCCCCHHHHHHHHCC--CHHHHHHHHHCCCEEE
T ss_conf             77663489999999698--8899999998794799


No 108
>>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:401-487)
Probab=34.63  E-value=26  Score=14.48  Aligned_cols=55  Identities=13%  Similarity=-0.087  Sum_probs=35.5

Q ss_pred             CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf             55873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM  226 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~  226 (262)
                      ...+.+++++||+.+++..+ ...+-+.|.+.|+..|...      ..-.||++|...-...
T Consensus        16 ~~~~~~t~~~l~~~l~~~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~LT~~G~~~~~~~   77 (87)
T 1hsj_A           16 SESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL   77 (87)
T ss_dssp             CSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred             HCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             61578649999864167811204889887751210111357651079999627678779999


No 109
>>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} (A:1-82)
Probab=34.40  E-value=26  Score=14.45  Aligned_cols=44  Identities=11%  Similarity=0.138  Sum_probs=32.7

Q ss_pred             CCCCC-CHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             58732-3999999738998-88999999997897685379944365
Q gi|254780125|r  173 NDEYL-TITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       173 ~~~~l-~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      ....+ +..++|+.+|+++ +.++.-..|...|+..+..+....+.
T Consensus        25 ~G~~LPs~~~la~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~   70 (82)
T 3bwg_A           25 QGDKLPVLETLXAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVR   70 (82)
T ss_dssp             TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             9299906999999989399999999999998612151488557999


No 110
>>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} (A:1-127)
Probab=32.32  E-value=28  Score=14.23  Aligned_cols=65  Identities=15%  Similarity=0.049  Sum_probs=41.6

Q ss_pred             CHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH
Q ss_conf             013466654155873239999997389988-8999999997897685379------9443657897543553
Q gi|254780125|r  162 AMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM  226 (262)
Q Consensus       162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~  226 (262)
                      +........+...+-+++++||+.+++..+ ...+-+.|.+.|+..|...      ..-.||++|.+.-...
T Consensus        42 ~~~~~iL~~i~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~glV~r~~~~~DkR~~~l~LT~~G~~~~~~~  113 (127)
T 2rdp_A           42 PPQFVALQWLLEEGDLTVGELSNKXYLACSTTTDLVDRXERNGLVARVRDEHDRRVVRIRLLEKGERIIEEV  113 (127)
T ss_dssp             HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHH
T ss_conf             999999999997799499999998784524488999989978865100124556401110048799999999


No 111
>>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} (A:1-78)
Probab=32.30  E-value=28  Score=14.22  Aligned_cols=47  Identities=13%  Similarity=0.089  Sum_probs=34.0

Q ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC------CEEECHHH
Q ss_conf             5587323999999738998889999999---978976853799------44365789
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG------GYRPTPKG  219 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~------~W~lt~kg  219 (262)
                      -..+....+++.+.+. ++|.+.++..|   .+.|+..|..-.      .+.||++|
T Consensus        23 l~~g~~rF~el~r~l~-gis~~~Ls~~Lk~L~~~glv~r~~~~~~p~~v~Y~LT~~G   78 (78)
T 2hzt_A           23 LTHGKKRTSELKRLXP-NITQKXLTQQLRELEADGVINRIVYNQVPPKVEYELSEYG   78 (78)
T ss_dssp             HTTCCBCHHHHHHHCT-TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG
T ss_pred             HHCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf             9819985999996761-5474889999999999898872265788861055753708


No 112
>>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94)
Probab=32.17  E-value=29  Score=14.21  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=35.5

Q ss_pred             HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             155873239999997389988-8999999997897685379944365
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      +.....+.-.++|+.+|++.+ .++.-+.|...|+..+..+..|.+.
T Consensus        46 l~~G~~l~e~~La~~~~vSr~tvR~al~~L~~~Gli~~~~~~G~~V~   92 (94)
T 2hs5_A           46 FRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVR   92 (94)
T ss_dssp             SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             99909869999999979599999999999998878631226776220


No 113
>>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} (A:1-82)
Probab=32.15  E-value=29  Score=14.21  Aligned_cols=43  Identities=19%  Similarity=0.114  Sum_probs=32.3

Q ss_pred             CCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEEC
Q ss_conf             8732-399999973899-888999999997897685379944365
Q gi|254780125|r  174 DEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPT  216 (262)
Q Consensus       174 ~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt  216 (262)
                      ...+ +..++|+.+|+. .+.++.-..|.+.|+..+..++.+...
T Consensus        31 G~~LPs~~~La~~~~vSr~tvr~Al~~L~~~gli~~~~~~G~~V~   75 (82)
T 2wv0_A           31 DMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS   75 (82)
T ss_dssp             TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             399936999999979699999999999997798899888335027


No 114
>>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} (A:50-100)
Probab=31.83  E-value=29  Score=14.17  Aligned_cols=33  Identities=15%  Similarity=0.089  Sum_probs=22.6

Q ss_pred             CCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC
Q ss_conf             239999997389988-899999999789768537
Q gi|254780125|r  177 LTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV  209 (262)
Q Consensus       177 l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~  209 (262)
                      +++.+||+.+++..+ .-.+-..|.+.||.+|..
T Consensus         2 it~~~la~~l~~~~~t~s~~i~~Le~~gli~r~~   35 (51)
T 3bro_A            2 VLQRDLESEFSIKSSTATVLLQRXEIKKLLYRKV   35 (51)
T ss_dssp             CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf             8999999887778236999999998888877501


No 115
>>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:)
Probab=30.74  E-value=30  Score=14.05  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=31.2

Q ss_pred             CCCC-CHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEE
Q ss_conf             8732-39999997389988-899999999789768537994436
Q gi|254780125|r  174 DEYL-TITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRP  215 (262)
Q Consensus       174 ~~~l-~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~l  215 (262)
                      ...| +..++++.+|++.+ .++.-..|...|+.++..+..+..
T Consensus        32 G~~LPs~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~G~~V   75 (102)
T 1v4r_A           32 GDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVV   75 (102)
T ss_dssp             TSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEES
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEE
T ss_conf             69986899999997979999999999999889679974877998


No 116
>>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} (A:156-250)
Probab=30.40  E-value=31  Score=14.02  Aligned_cols=55  Identities=11%  Similarity=0.094  Sum_probs=35.7

Q ss_pred             CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC-----C-CEEECHHHHHHHHHH
Q ss_conf             55873239999997389988-8999999997897685379-----9-443657897543553
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS-----G-GYRPTPKGEERGGKM  226 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~-----~-~W~lt~kg~~~g~~~  226 (262)
                      ...+.+++++||+.+++..+ ..++-+-|.+.|+..|...     . .-.+|++|...-...
T Consensus        15 ~~~~~~t~~~la~~l~~~~~~~s~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~g~~~~~~~   76 (95)
T 1p4x_A           15 QNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL   76 (95)
T ss_dssp             TTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH
T ss_conf             99996769999999788851599999999988998972799888705989898899999999


No 117
>>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} (A:10-83)
Probab=30.30  E-value=31  Score=14.00  Aligned_cols=41  Identities=22%  Similarity=0.183  Sum_probs=26.1

Q ss_pred             CCCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCE
Q ss_conf             587323999999738998889-99999997897685379944
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGY  213 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W  213 (262)
                      ..+..++++|+..+|++.+.. .--+.|.++|+......++|
T Consensus        21 ~~~~~~~~eia~~l~is~~tvS~HL~~L~~aglI~~~~~g~~   62 (74)
T 1uly_A           21 RNKEXTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEXK   62 (74)
T ss_dssp             TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred             HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf             829968999999989099999999999988898489986044


No 118
>>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:)
Probab=28.58  E-value=33  Score=13.81  Aligned_cols=28  Identities=18%  Similarity=0.331  Sum_probs=22.8

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHCCCE
Q ss_conf             323999999738998889999999978976
Q gi|254780125|r  176 YLTITQIGERLNPPQRARFLNKLLLKRGLQ  205 (262)
Q Consensus       176 ~l~~t~iak~l~~~~sa~~~N~lL~~~g~q  205 (262)
                      +=++++.|+.||+  +-.-+++.|.+.||.
T Consensus        33 ~gn~~~aA~~Lgi--sr~tL~rklkk~gi~   60 (61)
T 1g2h_A           33 YPSTRKLAQRLGV--SHTAIANKLKQYGIG   60 (61)
T ss_dssp             SCSHHHHHHHTTS--CTHHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHCC--CHHHHHHHHHHHCCC
T ss_conf             8738999999586--189999899984658


No 119
>>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56)
Probab=28.44  E-value=33  Score=13.79  Aligned_cols=25  Identities=8%  Similarity=0.166  Sum_probs=20.4

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHC
Q ss_conf             323999999738998889999999978
Q gi|254780125|r  176 YLTITQIGERLNPPQRARFLNKLLLKR  202 (262)
Q Consensus       176 ~l~~t~iak~l~~~~sa~~~N~lL~~~  202 (262)
                      -++.+++|+.+|  .+...+|.+|...
T Consensus        31 gis~~~lA~~lg--vs~~~is~Ii~gk   55 (56)
T 3cec_A           31 DINTANFAEILG--VSNQTIQEVINGQ   55 (56)
T ss_dssp             TCCHHHHHHHHT--SCHHHHHHHHTTS
T ss_pred             CCCHHHHHHHHC--CCHHHHHHHHCCC
T ss_conf             999999999978--2789999998177


No 120
>>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} (A:410-583)
Probab=28.25  E-value=14  Score=16.30  Aligned_cols=50  Identities=14%  Similarity=0.040  Sum_probs=32.4

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCC---EEECHH
Q ss_conf             5415587323999999738998-8899999999789768537994---436578
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGG---YRPTPK  218 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~---W~lt~k  218 (262)
                      .++...+.++..++++.+|++. ++...=+-|.+.|+..+..+++   |.+.++
T Consensus       114 ~~l~~~~~it~~ei~~~~gis~~ti~r~L~~L~~~G~i~~~g~gr~~~Y~l~~~  167 (174)
T 3lmm_A          114 LWLSEVGDLATSDLXAXCGVSRGTAKACVDGLVDEERVVAVGGGRSRRYRLVEL  167 (174)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEE
T ss_conf             999977993999999997949999999999999889779856788618999751


No 121
>>1bm8_A Transcription factor MBP1; cell cycle, cyclins, DNA synthesis, helix-turn-helix DNA- binding domain; 1.71A {Saccharomyces cerevisiae} (A:)
Probab=27.52  E-value=34  Score=13.69  Aligned_cols=51  Identities=20%  Similarity=0.214  Sum_probs=23.7

Q ss_pred             CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC---EEECCC------CCEEECHHHHHHHHH
Q ss_conf             58732399999973899888999999997897---685379------944365789754355
Q gi|254780125|r  173 NDEYLTITQIGERLNPPQRARFLNKLLLKRGL---QVSKVS------GGYRPTPKGEERGGK  225 (262)
Q Consensus       173 ~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~---q~Rk~~------~~W~lt~kg~~~g~~  225 (262)
                      +.+.+++|+|-|..++  +--...++|.....   .++-++      |.|.|++.+......
T Consensus        27 ~d~~VN~T~ilK~a~~--~K~~rtkiLe~e~~~~~h~kVqGG~~~~QGtWiP~~~A~~lA~~   86 (99)
T 1bm8_A           27 KDDWVNATHILKAANF--AKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEK   86 (99)
T ss_dssp             TTCCEEHHHHHHHTTC--CHHHHHHHHHHHTTTSSCEEESSSCSTTCEEEECHHHHHHHHHH
T ss_pred             CCCCEEHHHHHHHCCC--CCCCHHHHHHCHHHCCCCEEECCCCCCEEEEEECHHHHHHHHHH
T ss_conf             9991978896534289--83302344322131166265216876315899689999999998


No 122
>>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53)
Probab=25.24  E-value=37  Score=13.41  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=25.1

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCE
Q ss_conf             5415587323999999738998889999---999978976
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQRARFLN---KLLLKRGLQ  205 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~sa~~~N---~lL~~~g~q  205 (262)
                      ..+...+.++..+||+.+|+  |...+.   +-|.+.|+.
T Consensus        10 ~~L~~d~r~~~~elA~~lgv--S~~tv~~ri~~L~~~GiI   47 (53)
T 2pn6_A           10 KILQYNAKYSLDEIAREIRI--PKATLSYRIKKLEKDGVI   47 (53)
T ss_dssp             HHHTTCTTSCHHHHHHHHTS--CHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCHHH
T ss_conf             99998599999999999891--999999999999723034


No 123
>>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:)
Probab=24.66  E-value=38  Score=13.34  Aligned_cols=45  Identities=11%  Similarity=-0.045  Sum_probs=33.2

Q ss_pred             HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCE--EECCCCCEEECH
Q ss_conf             15587323999999738998889999999978976--853799443657
Q gi|254780125|r  171 SDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQ--VSKVSGGYRPTP  217 (262)
Q Consensus       171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q--~Rk~~~~W~lt~  217 (262)
                      ...+.++++.+.|+-||+  |-..+.+|.++..+-  +-+.++.|..-.
T Consensus        11 ~~ek~~ltv~Eaa~ylgi--s~~~ly~l~~~~~ip~~~~k~G~~~li~r   57 (70)
T 1y6u_A           11 IWERYTLTIEEASKYFRI--GENKLRRLAEENKNANWLIMNGNRIQIKR   57 (70)
T ss_dssp             TTTSSEEEHHHHHHHTCS--CHHHHHHHHHHCTTCSSEEEETTEEEEES
T ss_pred             CHHHHEECHHHHHHHHCC--CHHHHHHHHHHCCCCCCEEEECCEEEEEH
T ss_conf             027440579999999550--49999999985889980899567898879


No 124
>>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} (A:)
Probab=23.73  E-value=40  Score=13.22  Aligned_cols=24  Identities=25%  Similarity=0.441  Sum_probs=19.7

Q ss_pred             CCCHHHHHHHHHHCCCEEECCCCC
Q ss_conf             988899999999789768537994
Q gi|254780125|r  189 PQRARFLNKLLLKRGLQVSKVSGG  212 (262)
Q Consensus       189 ~~sa~~~N~lL~~~g~q~Rk~~~~  212 (262)
                      +|+.+.+-++|...|+.+..++|.
T Consensus         4 ~~k~~elik~L~~~Gf~~~r~~Gs   27 (70)
T 1whz_A            4 PPRPEEVARKLRRLGFVERXAKGG   27 (70)
T ss_dssp             CCCHHHHHHHHHHTTCEEEEEETT
T ss_pred             CCCHHHHHHHHHHCCCEEECCCCC
T ss_conf             988999999999889289624785


No 125
>>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:)
Probab=23.50  E-value=40  Score=13.19  Aligned_cols=28  Identities=11%  Similarity=0.177  Sum_probs=24.0

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHCCCEE
Q ss_conf             239999997389988899999999789768
Q gi|254780125|r  177 LTITQIGERLNPPQRARFLNKLLLKRGLQV  206 (262)
Q Consensus       177 l~~t~iak~l~~~~sa~~~N~lL~~~g~q~  206 (262)
                      -+++..|+.||  +|-..+...|.+.||..
T Consensus        33 gn~~~aA~~Lg--isr~tL~~klkk~gi~~   60 (63)
T 3e7l_A           33 YDLKRTAEEIG--IDLSNLYRKIKSLNIRV   60 (63)
T ss_dssp             TCHHHHHHHHT--CCHHHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHC--CCHHHHHHHHHHHCCCC
T ss_conf             98999999989--59999999999948995


No 126
>>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:)
Probab=23.14  E-value=29  Score=14.19  Aligned_cols=27  Identities=19%  Similarity=0.062  Sum_probs=21.5

Q ss_pred             CCHHHHHHHHCCCCCHHHHHHHHHHCCCE
Q ss_conf             23999999738998889999999978976
Q gi|254780125|r  177 LTITQIGERLNPPQRARFLNKLLLKRGLQ  205 (262)
Q Consensus       177 l~~t~iak~l~~~~sa~~~N~lL~~~g~q  205 (262)
                      -+++.+|+.||+  |-.-+.+.|.+.||+
T Consensus        65 gn~~~aA~~LGi--sR~TL~rklkk~gi~   91 (91)
T 1ntc_A           65 GHKQEAARLLGW--GAATLTAKLKELGME   91 (91)
T ss_dssp             TCTTHHHHHTTC--CHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHCC--CHHHHHHHHHHHCCC
T ss_conf             949999999798--999999999987849


No 127
>>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} (A:)
Probab=22.63  E-value=42  Score=13.08  Aligned_cols=49  Identities=31%  Similarity=0.160  Sum_probs=34.8

Q ss_pred             CCCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCCCEEECHHHHHHH
Q ss_conf             558732399999973899888999999---9978976853799443657897543
Q gi|254780125|r  172 DNDEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSGGYRPTPKGEERG  223 (262)
Q Consensus       172 ~~~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~~W~lt~kg~~~g  223 (262)
                      -+..-++-.+||+.||+  |-..++++   +.+.|+..- ....-.+|++|...-
T Consensus        26 yy~e~~tq~eIA~~Lgi--Sr~~V~r~L~~a~~~GlV~i-~i~~~~~t~~G~~~~   77 (200)
T 2p8t_A           26 LLKEPLGRKQISERLEL--GEGSVRTLLRKLSHLDIIRS-KQRGHFLTLKGKEIR   77 (200)
T ss_dssp             HTTSCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEE-C--CEEECHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEE-CCCCCEECHHHHHHH
T ss_conf             83488558999988098--27899999999976896896-178628847189999


No 128
>>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} (A:)
Probab=21.53  E-value=44  Score=12.93  Aligned_cols=29  Identities=14%  Similarity=0.192  Sum_probs=24.4

Q ss_pred             CCCHHHHHHHHCCCCCHHHHHHHHHHCCCEE
Q ss_conf             3239999997389988899999999789768
Q gi|254780125|r  176 YLTITQIGERLNPPQRARFLNKLLLKRGLQV  206 (262)
Q Consensus       176 ~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~  206 (262)
                      ..++.++|..+|  ++.-++-.-|.++|+..
T Consensus         2 ~~TV~qlA~ev~--~~vdrLleQl~~AGi~k   30 (49)
T 1nd9_A            2 DVTIKTLAAERQ--TSVERLVQQFADAGIRK   30 (49)
T ss_dssp             EECTTHHHHHHS--SSHHHHHHHHHHHTSCC
T ss_pred             CCCHHHHHHHHC--CCHHHHHHHHHHCCCCC
T ss_conf             444999999989--59999999999928999


No 129
>>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* (A:61-117)
Probab=21.40  E-value=44  Score=12.92  Aligned_cols=46  Identities=15%  Similarity=0.119  Sum_probs=30.1

Q ss_pred             CHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCCCEEECHHHHHHHHHHCCCC
Q ss_conf             399999973899888999999---99789768537994436578975435530475
Q gi|254780125|r  178 TITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSGGYRPTPKGEERGGKMCDVP  230 (262)
Q Consensus       178 ~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~~W~lt~kg~~~g~~~~~~p  230 (262)
                      ....+|...+  .-..++-.|   |+..|+. +..++.|.||    ++...|+.++
T Consensus         6 d~~tLA~~~~--avP~RL~mLLeaLrQigi~-~~~~gkWsLT----pfA~~mF~p~   54 (57)
T 1x19_A            6 DLATLAADTG--SVPPRLEMLLETLRQMRVI-NLEDGKWSLT----EFADYMFSPT   54 (57)
T ss_dssp             CHHHHHHHHT--CCHHHHHHHHHHHHHTTSE-EEETTEEEEC----HHHHHHSSSS
T ss_pred             CHHHHHHHHC--CCHHHHHHHHHHHHHCCCE-EEECCEEECC----HHHHHHHCCC
T ss_conf             9999998879--0999999999999877968-9669978529----8899982687


No 130
>>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96)
Probab=21.35  E-value=44  Score=12.91  Aligned_cols=41  Identities=22%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             CCCCCC-CHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCC
Q ss_conf             558732-39999997389988-899999999789768537994
Q gi|254780125|r  172 DNDEYL-TITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGG  212 (262)
Q Consensus       172 ~~~~~l-~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~  212 (262)
                      .....| +..++|+.+|++.+ .++.-.+|.+.|+.++..+.-
T Consensus        48 ~pG~~LPs~~~La~~~gvsr~tvr~Al~~L~~~Gli~~~~~~G   90 (96)
T 3eet_A           48 PPHTRLPSQARIREEYGVSDTVALEARKVLXAEGLVEGRSGSG   90 (96)
T ss_dssp             CTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC--
T ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCE
T ss_conf             9939991799999998959999999999999836606158826


No 131
>>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77)
Probab=20.95  E-value=45  Score=12.85  Aligned_cols=37  Identities=14%  Similarity=0.073  Sum_probs=25.4

Q ss_pred             HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCE
Q ss_conf             54155873239999997389988-89999999978976
Q gi|254780125|r  169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQ  205 (262)
Q Consensus       169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q  205 (262)
                      .+++..+.++..+||+.+|+..+ ...--+.|.+.|+.
T Consensus        34 ~~Lq~d~r~s~~ela~~lgis~~tv~~ri~rL~~~gvI   71 (77)
T 2e1c_A           34 KILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI   71 (77)
T ss_dssp             HHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf             99998389899999999881989999999998524550


No 132
>>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (B:)
Probab=20.92  E-value=45  Score=12.85  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=16.1

Q ss_pred             HHHHHHHHCCCHHHHHHHHHH
Q ss_conf             799999857996579999988
Q gi|254780125|r   73 DVYRLLVKSTLPSAQKFERWV   93 (262)
Q Consensus        73 gly~Li~~s~~p~A~~F~~Wv   93 (262)
                      .-.+++.+|++|..++|++=.
T Consensus        17 d~~r~vk~c~KP~~kEf~kia   37 (68)
T 2wwb_B           17 DSIRLVKRCTKPDRKEFQKIA   37 (68)
T ss_dssp             HHHHHHHHCCCCCTHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHH
T ss_conf             989999992499989999999


Done!