Query gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str. psy62] Match_columns 262 No_of_seqs 191 out of 1100 Neff 7.2 Searched_HMMs 33803 Date Sun May 22 22:37:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780125.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3hrs_A Metalloregulator SCAR; 94.5 0.13 3.8E-06 30.3 6.2 57 170-226 14-71 (138) 2 >2h09_A Transcriptional regula 94.4 0.1 3E-06 31.0 5.6 56 171-226 49-105 (155) 3 >2qq9_A Diphtheria toxin repre 94.3 0.13 3.9E-06 30.2 6.0 56 171-226 19-75 (146) 4 >3b73_A PHIH1 repressor-like p 94.2 0.13 3.9E-06 30.3 5.8 65 160-224 11-78 (111) 5 >1on2_A Transcriptional regula 93.3 0.2 5.9E-06 29.0 5.5 56 171-226 17-73 (142) 6 >1fx7_A Iron-dependent repress 92.4 0.49 1.4E-05 26.3 6.4 56 171-226 19-75 (141) 7 >2o0y_A Transcriptional regula 91.9 0.63 1.9E-05 25.5 6.5 61 166-226 28-89 (95) 8 >1xmk_A Double-stranded RNA-sp 88.9 0.92 2.7E-05 24.4 5.2 52 170-222 19-75 (79) 9 >1mkm_A ICLR transcriptional r 88.7 1.1 3.4E-05 23.8 5.5 50 166-215 13-63 (64) 10 >3cta_A Riboflavin kinase; str 86.8 1.3 3.8E-05 23.5 4.8 64 163-226 14-81 (91) 11 >2fxa_A Protease production re 84.9 1.7 5.1E-05 22.6 4.7 61 166-226 8-75 (81) 12 >2bv6_A MGRA, HTH-type transcr 84.8 2.6 7.8E-05 21.3 6.6 59 165-223 8-73 (76) 13 >2g7u_A Transcriptional regula 84.4 2.1 6.1E-05 22.0 5.0 52 166-218 19-71 (75) 14 >2fbi_A Probable transcription 82.4 2.2 6.5E-05 21.9 4.4 57 168-224 8-71 (75) 15 >3eyi_A Z-DNA-binding protein 82.4 1.3 4E-05 23.3 3.3 50 170-220 18-71 (72) 16 >3cjn_A Transcriptional regula 82.2 3.4 9.9E-05 20.6 5.3 58 167-224 10-74 (78) 17 >2pex_A Transcriptional regula 82.1 3.4 1E-04 20.6 5.4 55 167-221 9-70 (71) 18 >1z91_A Organic hydroperoxide 81.2 2 5.9E-05 22.1 3.9 59 165-223 10-75 (78) 19 >2ia2_A Putative transcription 81.2 2.9 8.7E-05 21.0 4.7 58 167-225 27-85 (86) 20 >2fa5_A Transcriptional regula 81.0 3.4 0.0001 20.5 5.0 66 162-227 49-121 (134) 21 >3ech_A MEXR, multidrug resist 81.0 3.7 0.00011 20.3 5.3 67 160-226 35-108 (122) 22 >3cdh_A Transcriptional regula 80.3 3.9 0.00011 20.2 7.4 65 161-225 12-83 (103) 23 >2eth_A Transcriptional regula 80.2 3.8 0.00011 20.2 5.0 66 161-226 43-115 (130) 24 >3bdd_A Regulatory protein MAR 79.0 4.2 0.00013 19.9 5.2 56 168-223 8-70 (73) 25 >1u78_A TC3 transposase, trans 78.1 2.9 8.6E-05 21.0 3.9 54 172-225 20-74 (88) 26 >1ub9_A Hypothetical protein P 77.6 4.6 0.00014 19.7 4.8 60 165-226 19-87 (100) 27 >1r1t_A Transcriptional repres 74.7 4.5 0.00013 19.7 4.1 45 173-217 12-57 (78) 28 >2qww_A Transcriptional regula 74.6 5.5 0.00016 19.1 9.0 67 160-226 39-114 (131) 29 >2fbk_A Transcriptional regula 74.1 5.7 0.00017 19.0 6.7 79 149-227 59-144 (157) 30 >3g3z_A NMB1585, transcription 74.0 5.7 0.00017 19.0 5.5 59 168-226 8-73 (91) 31 >2d1h_A ST1889, 109AA long hyp 73.9 5.1 0.00015 19.3 4.2 58 169-226 29-93 (109) 32 >1lj9_A Transcriptional regula 73.2 6 0.00018 18.9 5.7 56 169-226 9-73 (87) 33 >2zkz_A Transcriptional repres 72.1 3.4 9.9E-05 20.6 2.9 48 170-217 35-82 (99) 34 >1qbj_A Protein (double-strand 71.9 6.4 0.00019 18.7 6.7 49 171-222 22-76 (81) 35 >3k0l_A Repressor protein; hel 71.7 6.5 0.00019 18.6 9.3 67 160-226 44-117 (131) 36 >1g4d_A Repressor protein C; p 70.9 5.1 0.00015 19.3 3.6 37 174-210 2-38 (69) 37 >3cuo_A Uncharacterized HTH-ty 69.9 7 0.00021 18.4 5.1 53 169-221 22-78 (90) 38 >2hr3_A Probable transcription 69.5 7.2 0.00021 18.3 6.5 58 169-226 14-78 (94) 39 >3by6_A Predicted transcriptio 69.2 7.3 0.00022 18.3 4.5 52 172-223 30-83 (106) 40 >3jw4_A Transcriptional regula 68.5 7.5 0.00022 18.2 5.9 54 173-226 28-88 (101) 41 >1jgs_A Multiple antibiotic re 67.1 8 0.00024 18.0 7.8 65 162-226 34-105 (122) 42 >1s3j_A YUSO protein; structur 66.7 8.1 0.00024 17.9 8.2 67 160-226 35-108 (122) 43 >3e6m_A MARR family transcript 66.6 8.2 0.00024 17.9 7.3 67 160-226 51-124 (138) 44 >3bpv_A Transcriptional regula 66.3 8.3 0.00025 17.9 8.2 67 160-226 27-100 (114) 45 >2kko_A Possible transcription 65.1 6.7 0.0002 18.5 3.3 45 173-217 35-80 (82) 46 >2vxz_A Pyrsv_GP04; viral prot 65.0 7.8 0.00023 18.1 3.6 45 173-217 21-66 (165) 47 >1r1u_A CZRA, repressor protei 65.0 8.8 0.00026 17.7 3.9 43 174-216 37-80 (106) 48 >3hsr_A HTH-type transcription 64.7 8.9 0.00026 17.7 9.2 67 160-226 34-107 (119) 49 >2fsw_A PG_0823 protein; alpha 64.5 9 0.00026 17.7 5.9 55 172-227 34-97 (107) 50 >1bia_A BIRA bifunctional prot 63.9 8.4 0.00025 17.9 3.6 44 168-211 11-55 (64) 51 >3f6o_A Probable transcription 62.9 5.7 0.00017 19.0 2.6 45 173-217 28-73 (118) 52 >3eco_A MEPR; mutlidrug efflux 62.5 9.7 0.00029 17.4 7.9 73 153-226 25-104 (119) 53 >3edp_A LIN2111 protein; APC88 62.3 9.8 0.00029 17.4 4.1 43 175-217 31-75 (76) 54 >1hw1_A FADR, fatty acid metab 61.7 10 0.0003 17.3 4.2 43 175-217 29-73 (77) 55 >3bj6_A Transcriptional regula 61.6 10 0.0003 17.3 9.8 73 151-226 32-111 (125) 56 >2ek5_A Predicted transcriptio 61.1 10 0.0003 17.3 4.9 48 175-222 26-75 (101) 57 >1tns_A MU-transposase; DNA-bi 60.8 6.7 0.0002 18.5 2.6 37 174-210 2-38 (76) 58 >2heo_A Z-DNA binding protein 59.9 11 0.00032 17.1 5.3 44 171-216 20-66 (67) 59 >3c7j_A Transcriptional regula 59.3 11 0.00032 17.1 4.6 46 171-216 44-90 (91) 60 >3i53_A O-methyltransferase; C 58.9 11 0.00033 17.0 4.6 56 166-223 30-86 (90) 61 >2frh_A SARA, staphylococcal a 58.2 11 0.00034 16.9 5.7 77 149-226 27-110 (127) 62 >1j5y_A Transcriptional regula 58.1 9.6 0.00028 17.5 3.1 48 169-216 29-77 (79) 63 >1ixc_A CBNR, LYSR-type regula 56.8 9.7 0.00029 17.4 2.9 48 177-226 16-68 (88) 64 >1tw3_A COMT, carminomycin 4-O 56.6 12 0.00036 16.8 3.9 56 166-223 15-71 (80) 65 >3bja_A Transcriptional regula 56.2 12 0.00037 16.7 9.2 65 162-226 33-104 (118) 66 >1yyv_A Putative transcription 55.4 13 0.00038 16.6 5.3 54 173-227 45-107 (131) 67 >3f6v_A Possible transcription 55.0 10 0.0003 17.3 2.8 49 173-221 68-120 (131) 68 >3boq_A Transcriptional regula 54.6 13 0.00039 16.5 10.1 58 169-226 55-119 (133) 69 >2nnn_A Probable transcription 54.5 13 0.00039 16.5 3.3 44 166-209 8-52 (65) 70 >2p4w_A Transcriptional regula 54.2 13 0.00039 16.5 3.5 43 174-216 26-69 (77) 71 >3f8m_A GNTR-family protein tr 53.5 14 0.0004 16.4 3.6 40 174-213 33-74 (77) 72 >3fm5_A Transcriptional regula 52.8 14 0.00041 16.4 6.2 74 151-226 31-111 (124) 73 >2rhq_B Phenylalanyl-tRNA synt 52.7 14 0.00041 16.3 5.0 46 171-216 30-75 (108) 74 >1qgp_A Protein (double strand 52.2 14 0.00042 16.3 5.9 48 167-217 22-75 (77) 75 >2r3s_A Uncharacterized protei 52.0 14 0.00042 16.3 5.0 55 166-223 15-70 (79) 76 >1u2w_A CADC repressor, cadmiu 51.7 14 0.00043 16.2 4.4 48 170-217 23-71 (95) 77 >1b7y_B Phers, protein (phenyl 49.9 15 0.00046 16.0 5.5 71 171-258 25-95 (103) 78 >1z7u_A Hypothetical protein E 49.8 15 0.00046 16.0 5.5 55 173-228 32-95 (112) 79 >1amf_A Molybdate transport pr 49.7 13 0.00039 16.5 2.7 28 79-106 95-123 (126) 80 >2jsc_A Transcriptional regula 48.1 8.9 0.00026 17.7 1.6 45 173-217 31-76 (118) 81 >1ku9_A Hypothetical protein M 47.7 17 0.00049 15.8 6.9 60 149-210 16-76 (88) 82 >2di3_A Bacterial regulatory p 47.1 17 0.0005 15.8 3.0 43 172-214 23-67 (78) 83 >2nyx_A Probable transcription 46.8 17 0.00051 15.7 3.4 41 169-209 10-51 (64) 84 >3hot_A Transposable element m 46.4 17 0.00051 15.7 4.0 35 170-206 15-49 (52) 85 >3ic7_A Putative transcription 45.3 8 0.00024 18.0 1.0 39 178-216 8-47 (49) 86 >3fxq_A LYSR type regulator of 45.0 18 0.00054 15.5 4.3 48 177-226 17-69 (91) 87 >2oqg_A Possible transcription 44.7 18 0.00055 15.5 3.7 43 174-216 32-75 (79) 88 >1sfx_A Conserved hypothetical 43.6 19 0.00057 15.4 3.1 42 172-215 12-57 (64) 89 >1r7j_A Conserved hypothetical 43.5 19 0.00057 15.4 5.2 51 174-227 18-71 (95) 90 >2cxi_A Phenylalanyl-tRNA synt 43.2 19 0.00057 15.4 5.0 42 175-216 6-47 (71) 91 >3df8_A Possible HXLR family t 42.5 20 0.00059 15.3 6.8 53 175-228 19-76 (89) 92 >3fzv_A Probable transcription 42.2 20 0.00059 15.3 4.3 51 176-226 18-72 (88) 93 >1sfu_A 34L protein; protein/Z 41.8 20 0.0006 15.2 5.5 43 171-215 24-71 (75) 94 >2ip2_A Probable phenazine-spe 41.8 20 0.0006 15.2 5.1 51 166-220 33-86 (89) 95 >3ihu_A Transcriptional regula 40.6 21 0.00063 15.1 4.8 46 171-216 34-80 (82) 96 >1gdt_A GD resolvase, protein 40.2 18 0.00052 15.7 2.1 24 177-202 18-41 (42) 97 >2gxg_A 146AA long hypothetica 39.5 22 0.00065 15.0 9.0 55 172-226 46-107 (121) 98 >3deu_A Transcriptional regula 38.8 23 0.00067 14.9 7.3 65 162-226 53-125 (139) 99 >2v79_A DNA replication protei 38.1 23 0.00068 14.8 3.0 34 172-207 32-68 (120) 100 >3f3x_A Transcriptional regula 37.7 23 0.00069 14.8 4.4 54 173-226 47-107 (122) 101 >2a61_A Transcriptional regula 37.7 23 0.00069 14.8 3.5 42 168-209 11-53 (66) 102 >2w48_A Sorbitol operon regula 37.1 24 0.00071 14.7 2.9 26 175-202 20-45 (54) 103 >2fbh_A Transcriptional regula 36.8 24 0.00072 14.7 4.8 38 172-209 14-52 (67) 104 >2ict_A Antitoxin HIGA; helix- 36.6 24 0.00072 14.7 3.3 24 176-201 21-44 (46) 105 >3dbw_A Transcriptional regula 35.9 25 0.00074 14.6 4.1 50 63-112 38-87 (226) 106 >1fy7_A ESA1 histone acetyltra 35.2 26 0.00076 14.5 4.3 73 170-247 49-123 (123) 107 >2kfs_A Conserved hypothetical 34.8 26 0.00077 14.5 3.2 33 172-206 27-59 (75) 108 >1hsj_A Fusion protein consist 34.6 26 0.00077 14.5 3.3 55 172-226 16-77 (87) 109 >3bwg_A Uncharacterized HTH-ty 34.4 26 0.00078 14.5 4.6 44 173-216 25-70 (82) 110 >2rdp_A Putative transcription 32.3 28 0.00084 14.2 8.1 65 162-226 42-113 (127) 111 >2hzt_A Putative HTH-type tran 32.3 28 0.00084 14.2 4.7 47 172-219 23-78 (78) 112 >2hs5_A Putative transcription 32.2 29 0.00084 14.2 4.8 46 171-216 46-92 (94) 113 >2wv0_A YVOA, HTH-type transcr 32.2 29 0.00085 14.2 4.9 43 174-216 31-75 (82) 114 >3bro_A Transcriptional regula 31.8 29 0.00086 14.2 4.8 33 177-209 2-35 (51) 115 >1v4r_A Transcriptional repres 30.7 30 0.00089 14.1 2.2 42 174-215 32-75 (102) 116 >1p4x_A Staphylococcal accesso 30.4 31 0.0009 14.0 4.5 55 172-226 15-76 (95) 117 >1uly_A Hypothetical protein P 30.3 31 0.00091 14.0 2.6 41 173-213 21-62 (74) 118 >1g2h_A Transcriptional regula 28.6 33 0.00097 13.8 3.2 28 176-205 33-60 (61) 119 >3cec_A Putative antidote prot 28.4 33 0.00097 13.8 2.9 25 176-202 31-55 (56) 120 >3lmm_A Uncharacterized protei 28.2 14 0.00042 16.3 0.0 50 169-218 114-167 (174) 121 >1bm8_A Transcription factor M 27.5 34 0.001 13.7 5.2 51 173-225 27-86 (99) 122 >2pn6_A ST1022, 150AA long hyp 25.2 37 0.0011 13.4 3.4 35 169-205 10-47 (53) 123 >1y6u_A XIS, excisionase from 24.7 38 0.0011 13.3 4.7 45 171-217 11-57 (70) 124 >1whz_A Hypothetical protein; 23.7 40 0.0012 13.2 2.6 24 189-212 4-27 (70) 125 >3e7l_A Transcriptional regula 23.5 40 0.0012 13.2 3.7 28 177-206 33-60 (63) 126 >1ntc_A Protein (nitrogen regu 23.1 29 0.00085 14.2 0.8 27 177-205 65-91 (91) 127 >2p8t_A Hypothetical protein P 22.6 42 0.0012 13.1 6.0 49 172-223 26-77 (200) 128 >1nd9_A Translation initiation 21.5 44 0.0013 12.9 2.2 29 176-206 2-30 (49) 129 >1x19_A CRTF-related protein; 21.4 44 0.0013 12.9 6.4 46 178-230 6-54 (57) 130 >3eet_A Putative GNTR-family t 21.4 44 0.0013 12.9 5.2 41 172-212 48-90 (96) 131 >2e1c_A Putative HTH-type tran 20.9 45 0.0013 12.9 2.8 37 169-205 34-71 (77) 132 >2wwb_B SEC61gamma, protein tr 20.9 45 0.0013 12.8 1.8 21 73-93 17-37 (68) No 1 >>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A (A:1-138) Probab=94.46 E-value=0.13 Score=30.34 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=46.4 Q ss_pred HHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH Q ss_conf 4155873239999997389988-89999999978976853799443657897543553 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262) ++...+.+++++||+.+|+..+ ...+-+.|.+.|+..+...+.+.+|++|....... T Consensus 14 ~~~~~~~~t~~~lA~~lgis~~tvt~~l~~Le~~GlV~~~r~~~v~lT~~G~~~~~~~ 71 (138) T 3hrs_A 14 LGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDL 71 (138) T ss_dssp TTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH T ss_conf 9834998759999999789928999999999988997863895189878799999999 No 2 >>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli} (A:) Probab=94.42 E-value=0.1 Score=31.04 Aligned_cols=56 Identities=20% Similarity=0.068 Sum_probs=45.1 Q ss_pred HCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH Q ss_conf 15587323999999738998-889999999978976853799443657897543553 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262) ....+.++.++||+.+|+.. |....-+.|.+.|+..++..+.+.||++|...+... T Consensus 49 ~~~~~~v~~~dlA~~l~vs~~tv~~~l~~L~~~Gli~~~~~~~i~LT~~G~~~a~~~ 105 (155) T 2h09_A 49 IREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQES 105 (155) T ss_dssp HHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH T ss_conf 822797739999988598857899999999769977754987456637699999999 No 3 >>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, activation, DNA-binding, ferrous iron, cytoplasm; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ... (A:1-146) Probab=94.29 E-value=0.13 Score=30.21 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=45.6 Q ss_pred HCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH Q ss_conf 15587323999999738998-889999999978976853799443657897543553 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262) ....+.++.++||+.+|++. +....-+.|.+.|+..|...+.+.+|++|....... T Consensus 19 ~~~~~~v~~~elA~~l~vs~~svt~~i~rLe~~GlI~~~~~~~i~lT~~G~~~~~~~ 75 (146) T 2qq9_A 19 EEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASDRSLQMTPTGRTLATAV 75 (146) T ss_dssp HHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECHHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHHHHHH T ss_conf 865997619999999789927999999999977995205874477417689999999 No 4 >>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049} (A:) Probab=94.18 E-value=0.13 Score=30.26 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=48.7 Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCEEECCCCCEEECHHHHHHHH Q ss_conf 20013466654155873239999997389988899999---999789768537994436578975435 Q gi|254780125|r 160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFLNK---LLLKRGLQVSKVSGGYRPTPKGEERGG 224 (262) Q Consensus 160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~sa~~~N~---lL~~~g~q~Rk~~~~W~lt~kg~~~g~ 224 (262) +.|--..-..++...+.++...||+.+|+..|..++.+ -|.+.|+..+..++.|.+|++|..+-. T Consensus 11 ~~ptd~~ILe~L~~~g~~s~~eIA~~lgi~~S~~~Vs~~l~~L~~~GLve~~~~g~Y~lT~~G~~~L~ 78 (111) T 3b73_A 11 XTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111) T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHH T ss_conf 45448999999987378888898861366833889999999999778755379970671770899973 No 5 >>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} (A:) Probab=93.35 E-value=0.2 Score=28.99 Aligned_cols=56 Identities=20% Similarity=0.253 Sum_probs=44.5 Q ss_pred HCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH Q ss_conf 15587323999999738998-889999999978976853799443657897543553 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262) ....+..+.++||+.||+.. |....-+.|.+.|+..+...+.+.+|++|...+... T Consensus 17 ~~~~~~v~~~diA~~l~Vs~~sV~~~i~~L~~~GlV~~~~~~~v~LT~~G~~~a~~~ 73 (142) T 1on2_A 17 IEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKIGKRL 73 (142) T ss_dssp HHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHH T ss_conf 963899769999999698878999999999977996506898667767899999999 No 6 >>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} (A:1-141) Probab=92.39 E-value=0.49 Score=26.33 Aligned_cols=56 Identities=16% Similarity=0.082 Sum_probs=43.9 Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH Q ss_conf 155873239999997389988-89999999978976853799443657897543553 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262) ....+.+++++||+.+|++.+ ....-+.|.+.|+..+...+.-.+|++|....... T Consensus 19 ~~~~~~v~~~eLA~~l~vs~~tvt~~l~kLe~~glv~~~~~~~v~lT~~g~~~~~~~ 75 (141) T 1fx7_A 19 EEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGDRHLELTEKGRALAIAV 75 (141) T ss_dssp HHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHH T ss_pred HHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH T ss_conf 844997519999999789916899999999879988973998778887899999999 No 7 >>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} (A:1-95) Probab=91.91 E-value=0.63 Score=25.55 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=49.0 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH Q ss_conf 66654155873239999997389988-89999999978976853799443657897543553 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~ 226 (262) ..+.+..+..-++.++||+.+|++.| ..++=.-|.+.||..+...+.|.|..+-..+|... T Consensus 28 iL~~l~~~~~~~~~~eia~~lgl~~st~~RlL~tL~~~G~v~~~~~g~y~lG~~l~~l~~~~ 89 (95) T 2o0y_A 28 LLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATXCARSVLTSRADGSYSLGPEXLRWVRLA 89 (95) T ss_dssp HHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCHHHHHHHHH T ss_conf 99999747999899999999792989999999999966908984255531381899998754 No 8 >>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} (A:) Probab=88.91 E-value=0.92 Score=24.45 Aligned_cols=52 Identities=19% Similarity=0.135 Sum_probs=38.3 Q ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCC--CCEEECHHHHHH Q ss_conf 415587323999999738998889999999---97897685379--944365789754 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVS--GGYRPTPKGEER 222 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~--~~W~lt~kg~~~ 222 (262) ++.+.|-.++-+||+.||++ +++.+|+-| .+.|..++..+ -.|.||.++... T Consensus 19 ~Lk~~G~~tA~~lAk~Lglt-t~k~vn~~Ly~Le~~g~v~~~d~~Pp~W~Lt~~~~~r 75 (79) T 1xmk_A 19 YLFNVSDSSALNLAKNIGLT-KARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRER 75 (79) T ss_dssp HHHHTCCEEHHHHHHHHCGG-GHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHTT T ss_pred HHHHCCCCHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHH T ss_conf 99965984399999994997-2677759999999756800179999964523021056 No 9 >>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} (A:1-64) Probab=88.66 E-value=1.1 Score=23.82 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=38.9 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEE Q ss_conf 66654155873239999997389988-899999999789768537994436 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRP 215 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~l 215 (262) ..+.+.+....+++++||..+|++.| ..++-.-|.+.||..+...+.|.| T Consensus 13 iL~~l~~~~~~~t~~eia~~~glp~st~~Rll~tL~~~g~l~~~~~~~Y~l 63 (64) T 1mkm_A 13 ILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVP 63 (64) T ss_dssp HHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEE T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEC T ss_conf 999997289998999999987919999999999999779864057754422 No 10 >>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} (A:1-91) Probab=86.84 E-value=1.3 Score=23.48 Aligned_cols=64 Identities=25% Similarity=0.189 Sum_probs=42.9 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC---CEEECHHHHHHHHHH Q ss_conf 13466654155873239999997389988-89999999978976853799---443657897543553 Q gi|254780125|r 163 MDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG---GYRPTPKGEERGGKM 226 (262) Q Consensus 163 k~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~---~W~lt~kg~~~g~~~ 226 (262) ........+...+.++.++||+.+++..+ .-..-+.|.+.|+..|...+ .+.+|++|.+.-... T Consensus 14 ~~~~iL~~i~~~~~~t~~ela~~l~i~~~~vs~~i~~L~~~gli~r~~D~R~~~i~lT~~G~~~~~~~ 81 (91) T 3cta_A 14 KKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTE 81 (91) T ss_dssp HHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEECHHHHHHHHHH T ss_conf 99998564047998389999999887887999999999988998997349833344898899999999 No 11 >>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} (A:45-125) Probab=84.86 E-value=1.7 Score=22.55 Aligned_cols=61 Identities=18% Similarity=-0.043 Sum_probs=40.8 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH Q ss_conf 66654155873239999997389988-8999999997897685379------9443657897543553 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262) .....+...+-.++++||+.+++..+ ....-+.|.+.|+..|... ....+|++|.+.-... T Consensus 8 ~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~ 75 (81) T 2fxa_A 8 HILWIAYQLNGASISEIAKFGVXHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSL 75 (81) T ss_dssp HHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHH T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHH T ss_conf 99999997699589999999845755377999999987996565588777614878898999999999 No 12 >>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} (A:33-108) Probab=84.85 E-value=2.6 Score=21.31 Aligned_cols=59 Identities=15% Similarity=-0.024 Sum_probs=42.0 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHH Q ss_conf 466654155873239999997389988-8999999997897685379--9----443657897543 Q gi|254780125|r 165 IKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERG 223 (262) Q Consensus 165 ~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g 223 (262) ......+...+-+++++||+.+++..+ ...+-+.|.+.|+..|... + .-.+|++|.+.- T Consensus 8 ~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~i~r~~~~~D~R~~~i~lT~~g~~~~ 73 (76) T 2bv6_A 8 FLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRXEQVDLIKRERSEVDQREVFIHLTDKSETIR 73 (76) T ss_dssp HHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHH T ss_conf 999999980799499999999798873799999999858988980068988867888898999999 No 13 >>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP} (A:1-75) Probab=84.43 E-value=2.1 Score=22.03 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=40.3 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECHH Q ss_conf 66654155873239999997389988-899999999789768537994436578 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTPK 218 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~k 218 (262) .-+.+.++...++.++||+.+|++.| ..++-.-|.+.||.. +..+.|.|..+ T Consensus 19 iL~~l~~~~~~~t~~eia~~~glp~stv~Rll~tL~~~g~l~-~~~g~Y~lG~~ 71 (75) T 2g7u_A 19 VLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVA-GSGGRWSLTPR 71 (75) T ss_dssp HHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEECGG T ss_pred HHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCCEEECHH T ss_conf 999997379998999999997919999999999999799699-42874340389 No 14 >>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} (A:35-109) Probab=82.43 E-value=2.2 Score=21.86 Aligned_cols=57 Identities=11% Similarity=-0.063 Sum_probs=38.1 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHH Q ss_conf 654155873239999997389988-8999999997897685379--9----4436578975435 Q gi|254780125|r 168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGG 224 (262) Q Consensus 168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~ 224 (262) ...+...+-+++++|++.+++..+ ....-+-|.+.||..|... + ...+|++|.++-. T Consensus 8 L~~l~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~g~i~r~~~~~d~R~~~i~lT~~G~~~~~ 71 (75) T 2fbi_A 8 IRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFV 71 (75) T ss_dssp HHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHH T ss_conf 9999986998999999998867888999999999789879853156675122206898999999 No 15 >>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} (A:) Probab=82.36 E-value=1.3 Score=23.32 Aligned_cols=50 Identities=14% Similarity=-0.015 Sum_probs=36.4 Q ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCC-CCEEECHHHH Q ss_conf 415587323999999738998889999999---97897685379-9443657897 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVS-GGYRPTPKGE 220 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~-~~W~lt~kg~ 220 (262) ++.+.+.-.+..|||.||. .+++.+|+.| .+.|...+... --|.+|+++. T Consensus 18 ~L~~~g~~~Al~iAk~LGl-~~akeVN~~LY~L~k~g~l~~~~tpp~W~l~~k~~ 71 (72) T 3eyi_A 18 FLKDNGPQRALVIAQALGM-RTAKDVNRDLYRMKSRHLLDMDEQSKAWTIYRWTI 71 (72) T ss_dssp HHHHHCSEEHHHHHHHTTC-CSGGGTHHHHHHHHHTTSEEECTTTCEEEEC---- T ss_pred HHHHCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEE T ss_conf 9996699258899998581-11777568999999742777668867237787651 No 16 >>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3} (A:48-125) Probab=82.16 E-value=3.4 Score=20.59 Aligned_cols=58 Identities=21% Similarity=0.073 Sum_probs=39.4 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHH Q ss_conf 6654155873239999997389988-89999999978976853799------4436578975435 Q gi|254780125|r 167 HLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGG 224 (262) Q Consensus 167 ~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~ 224 (262) ....+...+.+++++||..+++..+ ...+-+-|.+.||..|..+. .-.||++|.+.-. T Consensus 10 iL~~l~~~g~~t~~ela~~~~~~~~~vs~~i~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~ 74 (78) T 3cjn_A 10 ALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYD 74 (78) T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHH T ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHEEECCCCCCCCHHHCCCHHHHHHHH T ss_conf 99999847998999999997888332458899999988540110577775301004677999999 No 17 >>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A (A:44-114) Probab=82.11 E-value=3.4 Score=20.58 Aligned_cols=55 Identities=22% Similarity=0.139 Sum_probs=37.2 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHH Q ss_conf 6654155873239999997389988-89999999978976853799------4436578975 Q gi|254780125|r 167 HLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEE 221 (262) Q Consensus 167 ~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~ 221 (262) ....+...+-.++++||+.+++..+ ....-+.|.+.||.+|.... .-.||++|++ T Consensus 9 iL~~i~~~~~~t~~~la~~~~i~~~~~s~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~ 70 (71) T 2pex_A 9 VMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRA 70 (71) T ss_dssp HHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECCCHHH T ss_conf 99999847998999999997968878999999999889989810898878479888935899 No 18 >>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} (A:34-111) Probab=81.22 E-value=2 Score=22.13 Aligned_cols=59 Identities=24% Similarity=0.107 Sum_probs=39.1 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHH Q ss_conf 466654155873239999997389988-8999999997897685379------9443657897543 Q gi|254780125|r 165 IKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERG 223 (262) Q Consensus 165 ~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g 223 (262) .....++...+-+++++||..+++..+ ...+-+.|.+.|+..|... ....+|++|.+.- T Consensus 10 ~~iL~~l~~~~~~t~~~la~~~~~~~~~~s~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~G~~~~ 75 (78) T 1z91_A 10 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLK 75 (78) T ss_dssp HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGG T ss_pred HHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEECHHHHHHH T ss_conf 999999885899999999999796876688999999978997861388888820347898899999 No 19 >>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP} (A:1-86) Probab=81.20 E-value=2.9 Score=20.99 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=43.3 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHH Q ss_conf 665415587323999999738998-88999999997897685379944365789754355 Q gi|254780125|r 167 HLPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGK 225 (262) Q Consensus 167 ~d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~ 225 (262) .+.+.+...-++.++||..+|++. +..++=+-|.+.||.. +..+.|.+-.+-..+|.. T Consensus 27 L~~l~~~~~~~tl~eia~~lg~~~st~~RlL~tL~~~g~v~-~~~~~y~lG~~~~~l~~a 85 (86) T 2ia2_A 27 IRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVA-TDGSAFWLTPRVLELGYS 85 (86) T ss_dssp HHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE-ESSSEEEECGGGGGTTHH T ss_pred HHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-ECCCEEEECCHHHHHHHH T ss_conf 99997379996999999997939999999999999779966-559703545313335777 No 20 >>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris} (A:1-134) Probab=81.05 E-value=3.4 Score=20.51 Aligned_cols=66 Identities=11% Similarity=0.094 Sum_probs=45.2 Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHHC Q ss_conf 01346665415587323999999738998-88999999997897685379--9----4436578975435530 Q gi|254780125|r 162 AMDIKHLPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKMC 227 (262) Q Consensus 162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~~ 227 (262) +........+...+.+++++||+.+++.. +..++-+.|.+.|+..|..+ + .-.+|++|++.-.... T Consensus 49 ~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~vsr~v~~Le~~Glv~r~~~~~D~R~~~v~lT~~G~~~~~~~~ 121 (134) T 2fa5_A 49 IPEWRVITILALYPGSSASEVSDRTAXDKVAVSRAVARLLERGFIRRETHGDDRRRSXLALSPAGRQVYETVA 121 (134) T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHCCHHHHHHHHHHH T ss_conf 9999999999858997999999998848889999999983188253305676641125540598999999999 No 21 >>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A (A:1-122) Probab=80.98 E-value=3.7 Score=20.32 Aligned_cols=67 Identities=16% Similarity=0.070 Sum_probs=46.4 Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH Q ss_conf 20013466654155873239999997389988-8999999997897685379------9443657897543553 Q gi|254780125|r 160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262) Q Consensus 160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262) +.+........+...+-+++++||+.+++..+ ...+-+.|.+.|+..|... ....+|++|.+.-... T Consensus 35 lt~~~~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~G~~~~~~~ 108 (122) T 3ech_A 35 LTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHA 108 (122) T ss_dssp CCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCEEECCCCCCCCEEEEEECHHHHHHHHHH T ss_conf 89999999999998799899999999793572699999999996132000167767413657888899999999 No 22 >>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3} (A:31-133) Probab=80.28 E-value=3.9 Score=20.16 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=44.0 Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHH Q ss_conf 0013466654155873239999997389988-8999999997897685379------944365789754355 Q gi|254780125|r 161 EAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGK 225 (262) Q Consensus 161 ~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~ 225 (262) .+........+...+-+++++||+.+++..+ ...+-+.|.+.|+..|..+ ....||++|...-.. T Consensus 12 ~~~~~~iL~~i~~~~~~t~~~la~~~~~~~~~vsr~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~ 83 (103) T 3cdh_A 12 RVPEWRVLACLVDNDAXXITRLAKLSLXEQSRXTRIVDQXDARGLVTRVADAKDKRRVRVRLTDDGRALAES 83 (103) T ss_dssp CHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHH T ss_conf 999999999998188959999999968886436556999872224354236788861688877608999999 No 23 >>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} (A:1-130) Probab=80.19 E-value=3.8 Score=20.20 Aligned_cols=66 Identities=21% Similarity=0.149 Sum_probs=44.6 Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 0013466654155873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 161 EAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 161 ~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) .+........+...+-+++++||+.+++..+ ....-+.|.+.|+..|..+. .-.||++|.+..... T Consensus 43 t~~~~~iL~~l~~~~~~t~~eLa~~~~i~~~~vs~~i~~L~~~glv~r~~~~~D~R~~~i~LT~~G~~~~~~~ 115 (130) T 2eth_A 43 KTTELYAFLYVALFGPKKXKEIAEFLSTTKSNVTNVVDSLEKRGLVVREXDPVDRRTYRVVLTEKGKEIFGEI 115 (130) T ss_dssp BHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHH T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCHHHHHHHHHH T ss_conf 9999999999998599599999999896998999999999878884565203566411002188899999999 No 24 >>3bdd_A Regulatory protein MARR; ZP_00875883.1, putative multiple antibiotic-resistance repressor (MARR), structural genomics; 2.20A {Streptococcus suis 89} (A:30-102) Probab=79.01 E-value=4.2 Score=19.90 Aligned_cols=56 Identities=25% Similarity=0.163 Sum_probs=38.8 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHH Q ss_conf 654155873239999997389988-89999999978976853799------443657897543 Q gi|254780125|r 168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERG 223 (262) Q Consensus 168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g 223 (262) ..++...+-+++++||+.+++..+ ...+-+.|.+.||..|.... .-.||++|...- T Consensus 8 L~~l~~~~~~~~~~la~~~~~~~stvs~~i~~L~~~g~I~r~~~~~D~R~~~l~LT~~G~~~~ 70 (73) T 3bdd_A 8 LQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 70 (73) T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHH T ss_conf 999998699899999999871575899999999977880325289999841012789899999 No 25 >>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} (A:54-141) Probab=78.11 E-value=2.9 Score=21.00 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=39.9 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCE-EECCCCCEEECHHHHHHHHH Q ss_conf 5587323999999738998889999999978976-85379944365789754355 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQ-VSKVSGGYRPTPKGEERGGK 225 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q-~Rk~~~~W~lt~kg~~~g~~ 225 (262) .....++..+|+..||+..|..-+.+.|++.|+. +.+......||.+....=.. T Consensus 20 ~~~~~~t~~~l~~~lg~~vS~~Tv~r~L~~~g~~~~~~~~~kP~Lt~~~~~~Rl~ 74 (88) T 1u78_A 20 ASNSCKTARDIRNELQLSASKRTILNVIKRSGVIVRQKLRPAPLLSADHKLKRLE 74 (88) T ss_dssp HHHCCCCHHHHHHHTTCCSCHHHHHHHHHHTC----------------------- T ss_pred HHCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHH T ss_conf 9762467889999818786799999999987972224577899999999999999 No 26 >>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} (A:) Probab=77.63 E-value=4.6 Score=19.67 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=40.9 Q ss_pred HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCEEECCC---C---CEEECHHHHHHHHHH Q ss_conf 46665415587323999999738998889999---99997897685379---9---443657897543553 Q gi|254780125|r 165 IKHLPSSDNDEYLTITQIGERLNPPQRARFLN---KLLLKRGLQVSKVS---G---GYRPTPKGEERGGKM 226 (262) Q Consensus 165 ~~~d~~~~~~~~l~~t~iak~l~~~~sa~~~N---~lL~~~g~q~Rk~~---~---~W~lt~kg~~~g~~~ 226 (262) ..-...+...+-+++++|++.+++ +...++ +.|.+.|+..|... + ...+|++|.+.-... T Consensus 19 ~~il~~l~~~~~~t~~eLa~~~~i--~~~~~s~~l~~L~~~GlV~~~~~~~d~R~~~~~LT~~G~~~~~~~ 87 (100) T 1ub9_A 19 LGIMIFLLPRRKAPFSQIQKVLDL--TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRF 87 (100) T ss_dssp HHHHHHHHHHSEEEHHHHHHHTTC--CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHHH--CCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH T ss_conf 999999726789619999998852--687441999986421248888767667542022689999999999 No 27 >>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} (A:45-122) Probab=74.70 E-value=4.5 Score=19.74 Aligned_cols=45 Identities=11% Similarity=0.043 Sum_probs=31.7 Q ss_pred CCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEECH Q ss_conf 58732399999973899888-9999999978976853799443657 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) ..+..++++||+.+|++.++ ..--+.|.+.|+..+...|.|..|. T Consensus 12 ~~~~~~~~ela~~l~~s~stvs~HL~~L~~aGlv~~~r~Gr~v~y~ 57 (78) T 1r1t_A 12 ARSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQ 57 (78) T ss_dssp TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE T ss_conf 8199569999999891988999999999988913789875889999 No 28 >>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str} (A:1-131) Probab=74.62 E-value=5.5 Score=19.10 Aligned_cols=67 Identities=16% Similarity=0.135 Sum_probs=45.6 Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC----C----CCEEECHHHHHHHHHH Q ss_conf 20013466654155873239999997389988-899999999789768537----9----9443657897543553 Q gi|254780125|r 160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV----S----GGYRPTPKGEERGGKM 226 (262) Q Consensus 160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~----~----~~W~lt~kg~~~g~~~ 226 (262) +.+........+...+.+++++||+.+++..+ .-.+-+-|.+.|+..|.. . ..+.||++|.+.-... T Consensus 39 lt~~q~~iL~~i~~~~~~t~~~la~~l~~~~s~vs~~i~~L~~~glV~r~~~~d~~D~R~~~i~LT~~G~~~~~~~ 114 (131) T 2qww_A 39 LTIQQLAXINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSXDLTLKLSKKGEDLSKRS 114 (131) T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHH T ss_conf 9889999999999879989999999978644666266579998778652320235666522425677899999999 No 29 >>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} (A:1-157) Probab=74.07 E-value=5.7 Score=19.01 Aligned_cols=79 Identities=18% Similarity=0.095 Sum_probs=49.0 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHH Q ss_conf 9999983023420013466654155873239999997389988-8999999997897685379------94436578975 Q gi|254780125|r 149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEE 221 (262) Q Consensus 149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~ 221 (262) .......++...+-..............+++++||+.+++..+ .-.+-+-|.+.||..|... ..-.||++|.. T Consensus 59 ~~~~~~~~l~~~~~~vL~~l~~~~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~Gli~r~~~~~DrR~~~i~lT~~G~~ 138 (157) T 2fbk_A 59 ERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRA 138 (157) T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHH T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHCCHHHHH T ss_conf 99998869899999999999862899996999999997868757999999998667712310565430245422787999 Q ss_pred HHHHHC Q ss_conf 435530 Q gi|254780125|r 222 RGGKMC 227 (262) Q Consensus 222 ~g~~~~ 227 (262) +..... T Consensus 139 ~~~~~~ 144 (157) T 2fbk_A 139 LVTHLL 144 (157) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 30 >>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} (A:30-120) Probab=74.01 E-value=5.7 Score=19.00 Aligned_cols=59 Identities=20% Similarity=0.185 Sum_probs=39.3 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 654155873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) ..++...+-+++++||+.+++..+ ..++-+.|.+.|+..|.... .-.||++|+..-... T Consensus 8 L~~l~~~~~~t~~eia~~l~~~~~~vs~~i~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~~~ 73 (91) T 3g3z_A 8 LYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPL 73 (91) T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHH T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCHHEEECCCCCCHHHHCCCHHHHHHHHHH T ss_conf 999998699499999999897898999999999831002000266556403211388899999999 No 31 >>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} (A:) Probab=73.85 E-value=5.1 Score=19.35 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=40.5 Q ss_pred HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 54155873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) .++...+-+++.+||+.+++..+ .-..-+-|.+.|+..|.... .+.+|++|.++...+ T Consensus 29 ~~l~~~~~~t~~eLa~~l~i~~~tvs~~l~~L~~~glI~r~~~~~d~R~~~i~lT~~g~~~~~~~ 93 (109) T 2d1h_A 29 KXVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKI 93 (109) T ss_dssp HHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCHHHHHHH T ss_conf 99984969899999999788723499999999987986362687789873478751789999999 No 32 >>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} (A:28-114) Probab=73.24 E-value=6 Score=18.87 Aligned_cols=56 Identities=14% Similarity=0.040 Sum_probs=37.9 Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCEEECCC-----C-CEEECHHHHHHHHHH Q ss_conf 5415587323999999738998889999---99997897685379-----9-443657897543553 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQRARFLN---KLLLKRGLQVSKVS-----G-GYRPTPKGEERGGKM 226 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~sa~~~N---~lL~~~g~q~Rk~~-----~-~W~lt~kg~~~g~~~ 226 (262) ..+...+-+++++||+.+++ +...++ +.|.+.|+..|... . .-.+|++|.+.-... T Consensus 9 ~~l~~~~~~t~~~la~~l~~--~~~~vs~~v~~L~~~g~i~~~~~~~D~R~~~i~lT~~G~~~~~~~ 73 (87) T 1lj9_A 9 VRVCENPGIIQEKIAELIKV--DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPII 73 (87) T ss_dssp HHHHHSTTEEHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH T ss_pred HHHHHCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHHHHH T ss_conf 99983899799999999897--885899999999988996306799998911447898999999999 No 33 >>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis} (A:) Probab=72.14 E-value=3.4 Score=20.59 Aligned_cols=48 Identities=17% Similarity=0.001 Sum_probs=36.8 Q ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEECH Q ss_conf 415587323999999738998889999999978976853799443657 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) .+...+-+++++|++.+++..+...-.--|.+.|+......|+|.-|. T Consensus 35 ~L~~~~~~~v~ela~~l~~s~stvS~HLkL~~aGli~~~r~G~~~~Y~ 82 (99) T 2zkz_A 35 ELYKHKALNVTQIIQILKLPQSTVSQHLCKXRGKVLKRNRQGLEIYYS 82 (99) T ss_dssp HHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTTTBEEEEETTEEEEE T ss_pred HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEECCEEEEE T ss_conf 997289946999999988698899999999982980589987889999 No 34 >>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} (A:) Probab=71.95 E-value=6.4 Score=18.68 Aligned_cols=49 Identities=14% Similarity=0.212 Sum_probs=35.5 Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC---CEEECHHHHHH Q ss_conf 15587323999999738998889999999---978976853799---44365789754 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG---GYRPTPKGEER 222 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~---~W~lt~kg~~~ 222 (262) +-..+.+++-+|||.|++ +-+.+|+.| .+.|..++ +.+ .|.++...... T Consensus 22 ~~~~~~~tA~~LAk~Lgi--~Kk~vNr~LY~L~k~g~v~~-~~~~PP~W~l~~~~~~~ 76 (81) T 1qbj_A 22 LGEGKATTAHDLSGKLGT--PKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAVSTQAW 76 (81) T ss_dssp HCTTCCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEE-ESSSSCEEEEC------ T ss_pred CCCCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEE-CCCCCCCEEECCCCCCC T ss_conf 489975109999999698--88898999999998788320-58989963745788877 No 35 >>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP} (A:1-131) Probab=71.66 E-value=6.5 Score=18.63 Aligned_cols=67 Identities=16% Similarity=0.108 Sum_probs=46.9 Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 20013466654155873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) +.+........+...+-+++++||+.+++..+ .-.+-.-|.+.|+..|..+. ...||++|.+.-... T Consensus 44 lt~~q~~iL~~l~~~~~~t~~~La~~~~i~~~~vs~~v~~L~~~GlV~r~~~~~D~R~~~i~lT~~G~~~~~~~ 117 (131) T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQC 117 (131) T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH T ss_conf 89999999999996799799999998588946489999999987984674347777137878777289999999 No 36 >>1g4d_A Repressor protein C; protein/DNA complex, helix-turn-helix, winged-helix, bacteriophage MU; NMR {Enterobacteria phage MU} (A:) Probab=70.93 E-value=5.1 Score=19.35 Aligned_cols=37 Identities=11% Similarity=-0.037 Sum_probs=30.8 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC Q ss_conf 8732399999973899888999999997897685379 Q gi|254780125|r 174 DEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVS 210 (262) Q Consensus 174 ~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~ 210 (262) +..+++.+||..-|++.|.+.++..+...|+++|+.. T Consensus 2 kew~ta~ELagl~glP~t~~gv~~~Ak~e~W~~r~r~ 38 (69) T 1g4d_A 2 SIWCSPQEIMAADGMPGSVAGVHYRANVQGWTKRKKE 38 (69) T ss_dssp CCCBCHHHHHTSTTSCSSHHHHHHHHHHHTCCEEECC T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 7420588872678999882899999988778999876 No 37 >>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12} (A:10-99) Probab=69.94 E-value=7 Score=18.38 Aligned_cols=53 Identities=8% Similarity=-0.054 Sum_probs=34.9 Q ss_pred HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCC---EEECHHHHH Q ss_conf 54155873239999997389988-899999999789768537994---436578975 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGG---YRPTPKGEE 221 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~---W~lt~kg~~ 221 (262) ..+...+-.++.+||+.+|++.+ ...--+.|.+.|+..+...|. +.+...+.+ T Consensus 22 ~~L~~~~~~~~~ela~~l~is~~tvs~HL~~L~~~Glv~~~~~g~~~~y~l~~~~~~ 78 (90) T 3cuo_A 22 CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVN 78 (90) T ss_dssp HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEECHHHHH T ss_conf 999769994199999998929878999999999889517998889999998869999 No 38 >>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pseudomonas aeruginosa} (A:30-123) Probab=69.46 E-value=7.2 Score=18.32 Aligned_cols=58 Identities=12% Similarity=0.017 Sum_probs=40.2 Q ss_pred HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH Q ss_conf 54155873239999997389988-8999999997897685379------9443657897543553 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262) .+.++++.+++++||+.+++..+ ...+-+-|.+.|+..|... ..-.+|++|.+.-... T Consensus 14 ~l~~~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~GlI~r~~~~~D~R~~~i~lT~~G~~~~~~~ 78 (94) T 2hr3_A 14 AIDRLGGDVTPSELAAAERXRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGN 78 (94) T ss_dssp HHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCHHHHHHHHHH T ss_conf 99976999899999999797988999999999866976864275400477623668899999999 No 39 >>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1} (A:1-106) Probab=69.23 E-value=7.3 Score=18.28 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=39.2 Q ss_pred CCCCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH Q ss_conf 558732-399999973899-8889999999978976853799443657897543 Q gi|254780125|r 172 DNDEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERG 223 (262) Q Consensus 172 ~~~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g 223 (262) .....+ +..++|+.+|++ .+.++.-..|.+.|+.++..++.|...+...... T Consensus 30 ~~G~~LPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~~~~~ 83 (106) T 3by6_A 30 SANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFITGNTASVK 83 (106) T ss_dssp CTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEECSCHHHHH T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCEEEEECCCHHHH T ss_conf 994998449999999698989999999999978907997287789817950554 No 40 >>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} (A:27-127) Probab=68.50 E-value=7.5 Score=18.18 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=38.8 Q ss_pred CCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 587323999999738998-889999999978976853799------443657897543553 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) ..+.+++++||+.+++.. +.-..-+-|.+.|+..|.... ...||++|...-..+ T Consensus 28 ~~~~~t~~~La~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 88 (101) T 3jw4_A 28 QESGIIQKDLAQFFGRRGASITSXLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEF 88 (101) T ss_dssp TTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCEEEECHHHHHHHHHH T ss_conf 9999799999999897885899999999988896315777888860447898899999999 No 41 >>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} (A:1-122) Probab=67.12 E-value=8 Score=18.00 Aligned_cols=65 Identities=15% Similarity=0.012 Sum_probs=42.5 Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH Q ss_conf 013466654155873239999997389988-8999999997897685379------9443657897543553 Q gi|254780125|r 162 AMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262) Q Consensus 162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262) +........+...+.+++++||+.+++..+ .-++-+-|.+.|+..|... ....||++|.+.-... T Consensus 34 ~~~~~iL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~lT~~G~~~~~~~ 105 (122) T 1jgs_A 34 AAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQC 105 (122) T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH T ss_conf 999999999987799899999999897886899999999868987984468888756888898899999999 No 42 >>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} (A:1-122) Probab=66.73 E-value=8.1 Score=17.95 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=45.3 Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHHHHHHH Q ss_conf 20013466654155873239999997389988-8999999997897685379--9----443657897543553 Q gi|254780125|r 160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEERGGKM 226 (262) Q Consensus 160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~~g~~~ 226 (262) +.+.......++...+-+++++||+.+++..+ ....-+-|.+.|+..|... + .-.||++|.+.-... T Consensus 35 ls~~q~~iL~~i~~~~~~t~~ela~~~~i~~~~vsr~v~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~ 108 (122) T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAERXEVKPSAVTLXADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV 108 (122) T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHH T ss_conf 89999999999998699799999999896998999999999862425520233677520002489899999999 No 43 >>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi} (A:1-138) Probab=66.64 E-value=8.2 Score=17.94 Aligned_cols=67 Identities=21% Similarity=0.179 Sum_probs=45.5 Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH Q ss_conf 20013466654155873239999997389988-8999999997897685379------9443657897543553 Q gi|254780125|r 160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262) Q Consensus 160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262) +.+........+...+-+++++||+.+++..+ .-.+-+.|.+.||..|... ....||++|.+.-... T Consensus 51 lt~~q~~iL~~l~~~~~~t~~ela~~~~~~~~~~s~~v~~L~~~glv~r~~~~~D~R~~~i~lT~~G~~~~~~~ 124 (138) T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVXEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEI 124 (138) T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCCCHHHHHHHHHH T ss_conf 79999999999985699699999999774798882999987418887750478998830011689899999999 No 44 >>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* (A:1-114) Probab=66.34 E-value=8.3 Score=17.90 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=45.1 Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 20013466654155873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) +.+........+...+.+++++||+.+++..+ ....-+-|.+.|+..|..+. .-.||++|.+....+ T Consensus 27 lt~~q~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~~DkR~~~i~LT~~G~~~~~~~ 100 (114) T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLI 100 (114) T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH T ss_conf 79999999999985899899999999896988999999999968986861158998857878898999999999 No 45 >>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A (A:1-82) Probab=65.12 E-value=6.7 Score=18.52 Aligned_cols=45 Identities=13% Similarity=0.001 Sum_probs=31.8 Q ss_pred CCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEECH Q ss_conf 5873239999997389988-89999999978976853799443657 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) ..+-.++++||+.+|++.+ ...--+.|.+.|+......|.|..|. T Consensus 35 ~~~~~~~~ela~~l~is~~tvs~HL~~L~~~glV~~~r~G~~~~Y~ 80 (82) T 2kko_A 35 AQGERAVEAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYR 80 (82) T ss_dssp TTCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEE T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE T ss_conf 8199789999999890999999999999988922799888999999 No 46 >>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus} (A:) Probab=65.01 E-value=7.8 Score=18.10 Aligned_cols=45 Identities=22% Similarity=0.140 Sum_probs=26.8 Q ss_pred CCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEECH Q ss_conf 58732399999973899888-9999999978976853799443657 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) ..+.+++++||..+|++.+. ..-=+.|.+.|+..+...|+|..|. T Consensus 21 ~~g~~tv~eLa~~lgis~~tvS~HL~~L~~~GlV~~~r~Gr~~~y~ 66 (165) T 2vxz_A 21 ADGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVC 66 (165) T ss_dssp TTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEE T ss_pred HCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEEEEEECCEEEEE T ss_conf 7545089999998265089999999999866816999863447999 No 47 >>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} (A:) Probab=64.95 E-value=8.8 Score=17.72 Aligned_cols=43 Identities=23% Similarity=0.115 Sum_probs=29.9 Q ss_pred CCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 873239999997389988-8999999997897685379944365 Q gi|254780125|r 174 DEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 174 ~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) .+.+++++||+.+|++.+ ...--+.|.+.|+......|.|..| T Consensus 37 ~~~~~~~ela~~l~is~stvs~HL~~L~~aglv~~~~~G~~~~Y 80 (106) T 1r1u_A 37 VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIY 80 (106) T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEE T ss_conf 39946999998876586689999999998891489988789999 No 48 >>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A (A:1-119) Probab=64.69 E-value=8.9 Score=17.69 Aligned_cols=67 Identities=25% Similarity=0.212 Sum_probs=45.2 Q ss_pred HCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 20013466654155873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 160 LEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 160 ~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) +.+.......++...+-+++++||+.+++..+ ....-+-|.+.|+..|.... .-.||++|.++-... T Consensus 34 lt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~~~ 107 (119) T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPL 107 (119) T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHH T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEECHHHHHHHHHH T ss_conf 89999999999987799899999999896886899999999817956985437898757888898899999999 No 49 >>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn- HEIX, structural genomics, PSI; HET: MSE; 2.16A {Porphyromonas gingivalis W83} (A:) Probab=64.50 E-value=9 Score=17.67 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=41.6 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC------CEEECHHHHHHHHHHC Q ss_conf 558732399999973899888999999---9978976853799------4436578975435530 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG------GYRPTPKGEERGGKMC 227 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~ 227 (262) -..+.....++.+.+. |+|.+.+++. |.+.|+..|..-. .+.||++|.+..+... T Consensus 34 l~~g~~rF~el~~~l~-gis~~~Ls~rLk~L~~~gli~r~~~~~~p~~veY~LT~~G~~L~~vl~ 97 (107) T 2fsw_A 34 INRRIIRYGELKRAIP-GISEKXLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLPIID 97 (107) T ss_dssp HTTSCEEHHHHHHHST-TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHHHHH T ss_pred HHCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEHHCHHHHHHHHHHH T ss_conf 8159987999964531-248678999999999889603334489998552301663888999999 No 50 >>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} (A:1-64) Probab=63.87 E-value=8.4 Score=17.86 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=31.6 Q ss_pred HHHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCC Q ss_conf 6541558732399999973899-8889999999978976853799 Q gi|254780125|r 168 LPSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSG 211 (262) Q Consensus 168 d~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~ 211 (262) ..++...+.+++.++|+.||++ .+.+.--+.|.+.|+..+..++ T Consensus 11 l~~L~~~~~is~~ela~~l~vS~~Ti~rdi~~L~~~G~~i~~~~g 55 (64) T 1bia_A 11 IALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVPG 55 (64) T ss_dssp HHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEETT T ss_pred HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECC T ss_conf 999856994689999999798999999999999976961999689 No 51 >>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} (A:) Probab=62.92 E-value=5.7 Score=18.99 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=29.8 Q ss_pred CCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEECH Q ss_conf 58732399999973899888-9999999978976853799443657 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) ..+-.++++||+.+|++.++ ..-=+.|.+.|+..+...|+|..|. T Consensus 28 ~~~~~~~~eLa~~l~is~~tvs~hL~~L~~~Glv~~~~~G~~~~y~ 73 (118) T 3f6o_A 28 SRGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCA 73 (118) T ss_dssp HTCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEE T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEE T ss_conf 8099777777988696999999999889988986267778889999 No 52 >>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} (A:1-119) Probab=62.47 E-value=9.7 Score=17.42 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=43.3 Q ss_pred HHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHH Q ss_conf 983023420013466654155873239999997389988-89999999978976853799------44365789754355 Q gi|254780125|r 153 KITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGK 225 (262) Q Consensus 153 ~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~ 225 (262) ...++...+-...... ......-+++++||+.+++..+ .-..-+-|.+.|+..|..+. ...+|++|.+.-.. T Consensus 25 ~~~~l~~~~~~vL~~l-~~~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~ 103 (119) T 3eco_A 25 EQFDITNEQGHTLGYL-YAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEA 103 (119) T ss_dssp GGGTCCHHHHHHHHHH-HHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEECCCCHHHHHHHHH T ss_conf 8859799999999999-955999979999999989688899999999998889651689888892024278889999999 Q ss_pred H Q ss_conf 3 Q gi|254780125|r 226 M 226 (262) Q Consensus 226 ~ 226 (262) . T Consensus 104 ~ 104 (119) T 3eco_A 104 F 104 (119) T ss_dssp H T ss_pred H T ss_conf 9 No 53 >>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua} (A:1-76) Probab=62.34 E-value=9.8 Score=17.40 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=32.5 Q ss_pred CCC-CHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECH Q ss_conf 732-3999999738998-889999999978976853799443657 Q gi|254780125|r 175 EYL-TITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 175 ~~l-~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) ..+ +..++++.+|++. +.+..-..|.+.|+.++..+.-+...+ T Consensus 31 ~~lpse~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~V~~ 75 (76) T 3edp_A 31 XLXPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGVGLYVQP 75 (76) T ss_dssp C--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEECC T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEEECC T ss_conf 999289999999794999999999999974161306886699941 No 54 >>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} (A:1-77) Probab=61.74 E-value=10 Score=17.33 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=33.8 Q ss_pred CCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECH Q ss_conf 732-399999973899-8889999999978976853799443657 Q gi|254780125|r 175 EYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 175 ~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) ..+ +.+++|+.++++ .+.++.-..|.+.|+.++..+..+.+.+ T Consensus 29 ~~lps~~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~V~~ 73 (77) T 1hw1_A 29 TILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNN 73 (77) T ss_dssp SBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEEECC T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCEECC T ss_conf 989069999999792999999999999986881542588416767 No 55 >>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3} (A:1-125) Probab=61.57 E-value=10 Score=17.31 Aligned_cols=73 Identities=21% Similarity=0.160 Sum_probs=46.8 Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHH Q ss_conf 99983023420013466654155873239999997389988-89999999978976853799------443657897543 Q gi|254780125|r 151 VTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERG 223 (262) Q Consensus 151 ~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g 223 (262) .....++...+ ......+...+-+++++||+.+++..+ .-.+-+.|.+.|+..|.... ...||++|.... T Consensus 32 ~~~~~~lt~~q---~~iL~~l~~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~GlV~r~~~~~D~R~~~i~LT~~G~~~~ 108 (125) T 3bj6_A 32 GTLREGVTVGQ---RAILEGLSLTPGATAPQLGAALQXKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII 108 (125) T ss_dssp HHHHTTCCHHH---HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH T ss_pred HHHHCCCCHHH---HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCHHHCCCCHHHHHHH T ss_conf 88676989999---999999998699899999999886575899999999870655765526755101002567689999 Q ss_pred HHH Q ss_conf 553 Q gi|254780125|r 224 GKM 226 (262) Q Consensus 224 ~~~ 226 (262) ... T Consensus 109 ~~~ 111 (125) T 3bj6_A 109 TAI 111 (125) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 56 >>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A (A:1-101) Probab=61.09 E-value=10 Score=17.26 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=37.9 Q ss_pred CCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHH Q ss_conf 732-399999973899-888999999997897685379944365789754 Q gi|254780125|r 175 EYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEER 222 (262) Q Consensus 175 ~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~ 222 (262) ..+ +..++|+.+|++ .+.++.-+.|.+.|+..+..++.|.+.+...+. T Consensus 26 ~~LPse~~La~~~~VSr~tvr~Al~~L~~~Gli~~~~g~G~~V~~~~~~~ 75 (101) T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGXFVSAQAPAL 75 (101) T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTTEEEECTTHHHH T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEECCCCHHH T ss_conf 99967999999978995899999999997892799889883678999999 No 57 >>1tns_A MU-transposase; DNA-binding protein; NMR {Enterobacteria phage MU} (A:) Probab=60.75 E-value=6.7 Score=18.54 Aligned_cols=37 Identities=11% Similarity=0.128 Sum_probs=29.0 Q ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCC Q ss_conf 8732399999973899888999999997897685379 Q gi|254780125|r 174 DEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVS 210 (262) Q Consensus 174 ~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~ 210 (262) +..+++.++|..-|++.|.+.++......|+++|+.. T Consensus 2 Kew~ta~ELagl~glP~t~~gv~~~Ak~e~W~~r~r~ 38 (76) T 1tns_A 2 ELWVSPKELANLPGLPKTSAGVIYVAKKQGWQNRTRA 38 (76) T ss_dssp CCEECHHHHTTCSSSCSSHHHHHHHHHTTCCCCCCCT T ss_pred CCCCCHHHHHCCCCCCCCHHHHHHHHHHCCHHHCCCC T ss_conf 6316599992599999887999999986776652223 No 58 >>2heo_A Z-DNA binding protein 1; protein DLM1/Z-DNA complex, immune system/DNA complex; 1.70A {Mus musculus} PDB: 1j75_A (A:) Probab=59.88 E-value=11 Score=17.12 Aligned_cols=44 Identities=20% Similarity=0.156 Sum_probs=33.4 Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCCCEEEC Q ss_conf 15587323999999738998889999999---97897685379944365 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSGGYRPT 216 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~~W~lt 216 (262) .++...+++.+||+.+|+ .-+.+|+.| .+.|...+..+..|.|- T Consensus 20 ~e~g~p~~a~~Iae~lgv--~kkeV~k~L~~Lkkeg~I~~~~r~~w~l~ 66 (67) T 2heo_A 20 SDDGGPVAIFQLVKKCQV--PKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67) T ss_dssp HHHCSCEEHHHHHHHHCS--CHHHHHHHHHHHHHTTSEEEEETTEEEEC T ss_pred HHCCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 976896879999999788--88999999999987748058998620478 No 59 >>3c7j_A Transcriptional regulator, GNTR family; structural genomics, MCSG, PSI-2, protein structure initiative; HET: MSE; 2.10A {Pseudomonas syringae PV} (A:1-91) Probab=59.33 E-value=11 Score=17.06 Aligned_cols=46 Identities=11% Similarity=0.025 Sum_probs=35.8 Q ss_pred HCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 15587323999999738998-88999999997897685379944365 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) +.....+...++|+.+|++. +.++.-..|...|+..+..+.-|.+. T Consensus 44 l~~G~~l~e~~La~~~gvSr~tvr~Al~~L~~~Glv~~~~~~G~~Va 90 (91) T 3c7j_A 44 LPSGTALRQQELATLFGVSRXPVREALRQLEAQSLLRVETHKGAVVA 90 (91) T ss_dssp SCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTTEEEEC T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHH T ss_conf 99919638999999988695499999999999642311233310110 No 60 >>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* (A:1-90) Probab=58.93 E-value=11 Score=17.01 Aligned_cols=56 Identities=20% Similarity=0.087 Sum_probs=38.3 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH Q ss_conf 666541558732399999973899-8889999999978976853799443657897543 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERG 223 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g 223 (262) .++.+. ++.++..+||+..|.. ..-.++-+.|...|+..+...+.|.+|+.+..+. T Consensus 30 if~~l~--~~~~t~~eLa~~~g~~~~~l~rllr~l~~~g~~~e~~~~~y~~t~~s~~L~ 86 (90) T 3i53_A 30 VADHIA--AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLR 86 (90) T ss_dssp HHHHHH--TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGS T ss_pred HHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEECCCCEEECCHHHHHHC T ss_conf 788972--799999999988692989999999999988917975898595588788761 No 61 >>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} (A:) Probab=58.23 E-value=11 Score=16.93 Aligned_cols=77 Identities=13% Similarity=0.021 Sum_probs=44.9 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC--C----CEEECHHHHH Q ss_conf 9999983023420013466654155873239999997389988-8999999997897685379--9----4436578975 Q gi|254780125|r 149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS--G----GYRPTPKGEE 221 (262) Q Consensus 149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~--~----~W~lt~kg~~ 221 (262) .......++...+-...... .......+++++||+.+++..+ .-+.-+-|.+.|+..|... + .-.||++|.+ T Consensus 27 ~~~~~~~gl~~~~~~iL~~l-~~~~~~~~t~~ela~~l~i~~~~vs~~v~~L~~~g~v~r~~~~~D~R~~~i~LT~~G~~ 105 (127) T 2frh_A 27 SLIKKEFSISFEEFAVLTYI-SENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRK 105 (127) T ss_dssp HHHHHTTCCCHHHHHHHHHH-HHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHH T ss_pred HHHHHHCCCCHHHHHHHHHH-HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCHHEEEECCCCCCCCCEEECHHHHH T ss_conf 99887749899999999999-84689991899999997989868999999997020313442124676410006898999 Q ss_pred HHHHH Q ss_conf 43553 Q gi|254780125|r 222 RGGKM 226 (262) Q Consensus 222 ~g~~~ 226 (262) .-... T Consensus 106 ~~~~~ 110 (127) T 2frh_A 106 KIESL 110 (127) T ss_dssp HHHHH T ss_pred HHHHH T ss_conf 99999 No 62 >>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} (A:1-79) Probab=58.14 E-value=9.6 Score=17.47 Aligned_cols=48 Identities=19% Similarity=0.120 Sum_probs=31.9 Q ss_pred HHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 541558732399999973899-888999999997897685379944365 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) .+.++.+.+++.+||+.|++. .+.++--.-|.+.|+...+.++-+.+. T Consensus 29 ~L~~~~~~vt~~eLa~~l~VS~~Ti~rdl~~L~~~G~~i~~~~gGy~l~ 77 (79) T 1j5y_A 29 ILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLA 77 (79) T ss_dssp HHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEECC T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEEEC T ss_conf 9998699776999999979799999999999997799789737988977 No 63 >>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} (A:1-88) Probab=56.77 E-value=9.7 Score=17.43 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=32.4 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHH----HHCCCE-EECCCCCEEECHHHHHHHHHH Q ss_conf 23999999738998889999999----978976-853799443657897543553 Q gi|254780125|r 177 LTITQIGERLNPPQRARFLNKLL----LKRGLQ-VSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 177 l~~t~iak~l~~~~sa~~~N~lL----~~~g~q-~Rk~~~~W~lt~kg~~~g~~~ 226 (262) -+++..|+.|++ |+-++-+.| ...|.. |.+.++.|.||+.|..+-... T Consensus 16 gs~t~AA~~L~i--t~~avs~~i~~LE~~~g~~LF~R~~~~~~lT~~G~~l~~~~ 68 (88) T 1ixc_A 16 GNXAAAAKRLHV--SQPPITRQXQALEADLGVVLLERSHRGIELTAAGHAFLEDA 68 (88) T ss_dssp SSHHHHHHHHTC--CHHHHHHHHHHHHHHHTSCCBC-----CCBCHHHHHHHHHH T ss_pred CCHHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHCCCCCC T ss_conf 999999999888--88999999999999869999998899427715031033343 No 64 >>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} (A:30-109) Probab=56.64 E-value=12 Score=16.76 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=38.0 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH Q ss_conf 666541558732399999973899-8889999999978976853799443657897543 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERG 223 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g 223 (262) .++.+. .+..++.++|+..|.. ..-.++-+.|...|+..+...+.|.+|+.+.-.. T Consensus 15 if~~L~--~~p~t~~eLA~~~g~~~~~l~rllr~l~~~gl~~e~~~~~y~~t~~s~~L~ 71 (80) T 1tw3_A 15 LVDHIL--AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLA 71 (80) T ss_dssp HHHHHH--TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEETTEEEECTTGGGGS T ss_pred HHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHC T ss_conf 778974--699899999988790999999999999867969950898554698999860 No 65 >>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987} (A:1-118) Probab=56.15 E-value=12 Score=16.71 Aligned_cols=65 Identities=11% Similarity=0.052 Sum_probs=44.4 Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 01346665415587323999999738998-889999999978976853799------443657897543553 Q gi|254780125|r 162 AMDIKHLPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) +.......++...+.+++++||+.+++.. +...+-+-|.+.|+..|.... .-.||++|.+.-... T Consensus 33 ~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 104 (118) T 3bja_A 33 YVQFGVIQVLAKSGKVSXSKLIENXGCVPSNXTTXIQRXKRDGYVXTEKNPNDQRETLVYLTKKGEETKKQV 104 (118) T ss_dssp HHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCEEEEECCCCCCEEEEEECHHHHHHHHHH T ss_conf 999999999998699899999998685746187999998431154876458888405888898899999999 No 66 >>1yyv_A Putative transcriptional regulator; reductive methylation, dimethyl lysine, structural genomics, PSI, protein structure initiative; HET: MLY; 2.35A {Salmonella typhimurium LT2} (A:) Probab=55.42 E-value=13 Score=16.63 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=40.7 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC------CEEECHHHHHHHHHHC Q ss_conf 58732399999973899888999999---9978976853799------4436578975435530 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG------GYRPTPKGEERGGKMC 227 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~------~W~lt~kg~~~g~~~~ 227 (262) ..+.....++.+.+. |+|.+.+++. |.+.|+..|.... .+.||++|....+.+. T Consensus 45 ~~g~~rf~el~~~l~-giS~~~Ls~rLk~L~~~Glv~R~~~~~~p~~v~Y~LT~~G~~l~~il~ 107 (131) T 1yyv_A 45 RDGTHRFSDLRRXXG-GVSEXXLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDXVA 107 (131) T ss_dssp GGCCEEHHHHHHHST-TCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 739986999998833-310588999999999779315552588873499997087999999999 No 67 >>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} (A:1-131) Probab=55.03 E-value=10 Score=17.28 Aligned_cols=49 Identities=18% Similarity=0.336 Sum_probs=32.0 Q ss_pred CCCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCE---EECHHHHH Q ss_conf 58732399999973899888-999999997897685379944---36578975 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGY---RPTPKGEE 221 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W---~lt~kg~~ 221 (262) ..+.+++++||+.+|++.++ ..--+.|.+.|+..+...|+| .+++++.. T Consensus 68 ~~~~~~~~eLa~~l~is~~tvS~HL~~L~~aGlV~~~r~G~~~~Y~l~~~~~~ 120 (131) T 3f6v_A 68 TSGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLA 120 (131) T ss_dssp GGCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEECHHHHH T ss_conf 82991799999998878778999875498699357898779899998869999 No 68 >>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3} (A:1-133) Probab=54.58 E-value=13 Score=16.54 Aligned_cols=58 Identities=19% Similarity=0.110 Sum_probs=42.1 Q ss_pred HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH Q ss_conf 54155873239999997389988-8999999997897685379------9443657897543553 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262) .+.+..+-+++++||+.+++..+ ...+-..|.+.|+..|... ....||++|...-... T Consensus 55 ~l~~~~~~~t~~~la~~l~i~~~~vs~~i~~Le~~GlI~r~~~~~DrR~~~i~lT~~G~~~~~~~ 119 (133) T 3boq_A 55 QLARNPDGLSXGKLSGALKVTNGNVSGLVNRLIKDGXVVKAXSADDRRSFSAKLTDAGLTTFKQA 119 (133) T ss_dssp HHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHH T ss_pred HHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH T ss_conf 99858999889999988777898999999999868886761066767514777898999999999 No 69 >>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} (A:35-99) Probab=54.45 E-value=13 Score=16.52 Aligned_cols=44 Identities=18% Similarity=0.082 Sum_probs=29.4 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC Q ss_conf 66654155873239999997389988-899999999789768537 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV 209 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~ 209 (262) .....+...+-+++++||+.+++..+ ..++-+-|.+.|+..|.+ T Consensus 8 ~vL~~l~~~~~~t~~ela~~~~~~~~~vsr~i~~L~~~g~I~r~~ 52 (65) T 2nnn_A 8 AALVRLGETGPCPQNQLGRLTAXDAATIKGVVERLDKRGLIQRSA 52 (65) T ss_dssp HHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEE T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEEE T ss_conf 999999987993999999987878531428999998678804645 No 70 >>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged helix, DNA binding; 2.60A {Pyrococcus furiosus} (A:1-77) Probab=54.18 E-value=13 Score=16.49 Aligned_cols=43 Identities=21% Similarity=0.162 Sum_probs=29.7 Q ss_pred CCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEEC Q ss_conf 87323999999738998889-99999997897685379944365 Q gi|254780125|r 174 DEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 174 ~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) .+.+++++||+.+|++.+.. .--+.|.++|+......|.|..| T Consensus 26 ~~~~~~~ela~~l~is~stvs~HL~~L~~aglV~~~k~g~~~~y 69 (77) T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVEKIPRGR 69 (77) T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCBTTBC T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC T ss_conf 19988999999989099999999999998897388863237898 No 71 >>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis} (A:1-77) Probab=53.47 E-value=14 Score=16.42 Aligned_cols=40 Identities=15% Similarity=0.117 Sum_probs=30.6 Q ss_pred CCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCE Q ss_conf 8732-399999973899-888999999997897685379944 Q gi|254780125|r 174 DEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGY 213 (262) Q Consensus 174 ~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W 213 (262) ...+ +..++|+.++++ .+.++.-+.|.+.|+.++..+|.+ T Consensus 33 G~~lPser~La~~~~VSr~tvr~Al~~L~~~Gli~~~g~G~~ 74 (77) T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLIDGRVERRGRTTV 74 (77) T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTEEE T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCEECCCCEEE T ss_conf 786846999999979699999999999997077620485169 No 72 >>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1} (A:1-124) Probab=52.85 E-value=14 Score=16.35 Aligned_cols=74 Identities=15% Similarity=0.056 Sum_probs=44.0 Q ss_pred HHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHH Q ss_conf 99983023420013466654155873239999997389988-8999999997897685379------9443657897543 Q gi|254780125|r 151 VTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERG 223 (262) Q Consensus 151 ~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g 223 (262) .....++...+-....+ +.....-+++++||+.+++..+ ...+-+-|.+.|+..|... ..-.||++|.+.- T Consensus 31 ~~~~~~lt~~q~~iL~~--l~~~~~~~t~~ela~~~~~~~~~vs~~i~~L~~~glI~r~~~~~D~R~~~i~LT~~G~~~~ 108 (124) T 3fm5_A 31 ALVPTGLRVRSYSVLVL--ACEQAEGVNQRGVAATXGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLR 108 (124) T ss_dssp HHGGGTCCHHHHHHHHH--HHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHH T ss_pred HHHHCCCCHHHHHHHHH--HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEEEEECHHHHHHH T ss_conf 99884989999999999--9985989899999999788777788999999986985651488767746878898899999 Q ss_pred HHH Q ss_conf 553 Q gi|254780125|r 224 GKM 226 (262) Q Consensus 224 ~~~ 226 (262) ... T Consensus 109 ~~~ 111 (124) T 3fm5_A 109 DDA 111 (124) T ss_dssp HHH T ss_pred HHH T ss_conf 999 No 73 >>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* (B:170-196,B:403-483) Probab=52.70 E-value=14 Score=16.34 Aligned_cols=46 Identities=4% Similarity=0.015 Sum_probs=39.2 Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 1558732399999973899888999999997897685379944365 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) ...+-.++...+.+.+|+..+...+-++|...|+......+.|..+ T Consensus 30 ~~~~I~l~~~~i~klLG~~is~e~i~~iL~rLgf~v~~~~d~~~V~ 75 (108) T 2rhq_B 30 FVTPIDITAEKVNKTIGFNLSNDEIQSIFRQLGFETTLKGETLTVN 75 (108) T ss_dssp SEEEEEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEE T ss_pred CCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 2100013089998652898641024689985233132269769998 No 74 >>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} (A:) Probab=52.19 E-value=14 Score=16.28 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=32.8 Q ss_pred HHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC---CEEECH Q ss_conf 665415587323999999738998889999999---978976853799---443657 Q gi|254780125|r 167 HLPSSDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG---GYRPTP 217 (262) Q Consensus 167 ~d~~~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~---~W~lt~ 217 (262) +..-+...+.+++-+|||.||+ +-+.+|+.| .+.|-.++ +++ .|.++. T Consensus 22 ~L~~~~~g~~~tA~~LAk~lg~--~Kk~vN~~LY~L~k~g~v~~-~~~~PP~W~l~~ 75 (77) T 1qgp_A 22 FLEELGEGKATTAHDLSGKLGT--PKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAV 75 (77) T ss_dssp HHHHHCSSSCEEHHHHHHHHCC--CHHHHHHHHHHHHHHTSEEE-ECSSSCEEEECC T ss_pred HHHHCCCCCCHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEE-CCCCCCCEEECC T ss_conf 9996589876029999999698--88888999999998789530-699899326057 No 75 >>2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} (A:17-95) Probab=52.01 E-value=14 Score=16.27 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=39.4 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHH Q ss_conf 666541558732399999973899-8889999999978976853799443657897543 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERG 223 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g 223 (262) .+|.+. ++..++.+||..++.. .....+=+.|...|+.. +..+.|.+|+.+..+- T Consensus 15 lfd~L~--~~p~t~~~La~~~g~~~~~~~~lLr~L~~~g~~~-~~~~~y~~t~~s~~~l 70 (79) T 2r3s_A 15 VFTAIS--QGIESSQSLAQKCQTSERGXRXLCDYLVIIGFXT-KQAEGYRLTSDSAXFL 70 (79) T ss_dssp HHHHHT--TSEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEE-EETTEEEECHHHHHHT T ss_pred HHHHHH--CCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCEE-ECCCCCCCCHHHHHHC T ss_conf 789984--7999999999872989899999999999779148-4188764598788434 No 76 >>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} (A:28-122) Probab=51.72 E-value=14 Score=16.24 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=31.9 Q ss_pred HHCCCCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH Q ss_conf 415587323999999738998889-999999978976853799443657 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) .+...+-.++.+|++.+|+..++. .--+.|.+.|+..+...|+|..|. T Consensus 23 ~L~~~~~~~v~eL~~~l~is~s~vs~HL~~L~~~GlV~~~~~g~~~~y~ 71 (95) T 1u2w_A 23 ALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYS 71 (95) T ss_dssp HHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEE T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEE T ss_conf 9988799069999988845700799999999988925899988899999 No 77 >>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (B:166-190,B:401-478) Probab=49.90 E-value=15 Score=16.05 Aligned_cols=71 Identities=14% Similarity=0.124 Sum_probs=52.0 Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHH Q ss_conf 15587323999999738998889999999978976853799443657897543553047534688331167545017765 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKMCDVPMQHVEGSTQQLKWNSNLLVS 250 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~~~~p~~~~g~~~~q~~w~~~v~~~ 250 (262) ...+-.++...+.+.+|+..+...+-..|...|+.+...++.|..+ .|..|.+ +.-..++++. T Consensus 25 ~~~~i~l~~~~i~~iLG~~l~~e~i~~~L~rLGf~v~~~~~~~~V~------------vPsyR~D-----I~~~~DiIEE 87 (103) T 1b7y_B 25 APEAIPFRPEYANRLLGTSYPEAEQIAILKRLGCRVEGEGPTYRVT------------PPSHRLD-----LRLEEDLVEE 87 (103) T ss_dssp CCCCEEECHHHHHHHHTCCCCHHHHHHHHHHTTCEEESSSSSEEEE------------CCTTCCS-----CCSHHHHHHH T ss_pred CCEEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEECCCCCEEEE------------ECHHHHH-----HCCCCCHHHH T ss_conf 0014314489997412210020167899975487220588737999------------6303565-----5466107888 Q ss_pred HHHHHCCC Q ss_conf 65310235 Q gi|254780125|r 251 FLQNELIN 258 (262) Q Consensus 251 ~~~~~~~~ 258 (262) +.+.-+.| T Consensus 88 IaR~yGyd 95 (103) T 1b7y_B 88 VARIQGYE 95 (103) T ss_dssp HHHHHCGG T ss_pred HHHHHCCC T ss_conf 88770757 No 78 >>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, protein structure initiative; 2.20A {Enterococcus faecalis V583} (A:) Probab=49.83 E-value=15 Score=16.04 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=40.9 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCC------CCEEECHHHHHHHHHHCC Q ss_conf 587323999999738998889999999---97897685379------944365789754355304 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVS------GGYRPTPKGEERGGKMCD 228 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~------~~W~lt~kg~~~g~~~~~ 228 (262) ..|.....++.+.+. |+|.+.++..| .+.|+..|+.- -.+.||++|...-+.+.. T Consensus 32 ~~g~~rf~el~r~l~-giS~~~Ls~rLk~L~~~gli~r~~~~~~p~~v~Y~LT~~G~~L~pil~~ 95 (112) T 1z7u_A 32 FQGTKRNGELXRALD-GITQRVLTDRLREXEKDGLVHRESFNELPPRVEYTLTPEGYALYDALSS 95 (112) T ss_dssp HHSCBCHHHHHHHST-TCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHHHHHHH T ss_pred HCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHCCCCEEECCCCCCCEEHHHHHHHHHHHHHHHHH T ss_conf 729987999998762-2002169998989996886124325788863040434758799999999 No 79 >>1amf_A Molybdate transport protein MODA; periplasmic, binding protein; 1.75A {Escherichia coli} (A:1-83,A:191-233) Probab=49.68 E-value=13 Score=16.51 Aligned_cols=28 Identities=7% Similarity=0.144 Sum_probs=22.1 Q ss_pred HHCCCHHHHHHHHHHHH-HHHHHHHHHCC Q ss_conf 85799657999998889-78999996077 Q gi|254780125|r 79 VKSTLPSAQKFERWVFE-EVLPTLRKTGS 106 (262) Q Consensus 79 ~~s~~p~A~~F~~Wv~~-eVLPsIRktG~ 106 (262) -.|..|+|+.|-+||++ |-.--++|+|- T Consensus 95 ~~~~~~~a~~f~~fl~s~~a~~i~~~~Gf 123 (126) T 1amf_A 95 EGHNNATVKAFYDYLKGPQAAEIFKRYGF 123 (126) T ss_dssp TTCCSHHHHHHHHHHTSHHHHHHHHHTTC T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHCCC T ss_conf 79998999999999789999999998492 No 80 >>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV} (A:) Probab=48.07 E-value=8.9 Score=17.67 Aligned_cols=45 Identities=18% Similarity=0.016 Sum_probs=30.1 Q ss_pred CCCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCEEECH Q ss_conf 587323999999738998889-999999978976853799443657 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGYRPTP 217 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W~lt~ 217 (262) ..+-.++++||+.+|++.+.. .--+.|.+.|+..+...|.|..|. T Consensus 31 ~~~~~~v~eLa~~l~~s~stvS~HL~~L~~~glV~~~~~G~~~~Y~ 76 (118) T 2jsc_A 31 LDGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYA 76 (118) T ss_dssp HTTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEE T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEE T ss_conf 8199479999999885665699999999888921799988989999 No 81 >>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} (A:1-88) Probab=47.65 E-value=17 Score=15.82 Aligned_cols=60 Identities=22% Similarity=0.140 Sum_probs=36.2 Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC Q ss_conf 9999983023420013466654155873239999997389988-8999999997897685379 Q gi|254780125|r 149 RGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS 210 (262) Q Consensus 149 ~~~~~~~~i~~~~pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~ 210 (262) .......++...+-...+. +....+.+++++||+.+++..+ .-.+-+.|.+.||..|... T Consensus 16 ~~~l~~~gls~~q~~vL~~--l~~~~g~~t~~~La~~~~~~~~~vs~~i~~Le~~G~I~r~~~ 76 (88) T 1ku9_A 16 SELAKIHGLNKSVGAVYAI--LYLSDKPLTISDIXEELKISKGNVSXSLKKLEELGFVRKVWI 76 (88) T ss_dssp HHHHHHTTCCHHHHHHHHH--HHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC T ss_pred HHHHHHCCCCHHHHHHHHH--HHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC T ss_conf 9999981979999999999--997698969999997848665149999999998899898528 No 82 >>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum} (A:1-78) Probab=47.10 E-value=17 Score=15.76 Aligned_cols=43 Identities=19% Similarity=0.167 Sum_probs=31.9 Q ss_pred CCCCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEE Q ss_conf 558732-399999973899-8889999999978976853799443 Q gi|254780125|r 172 DNDEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYR 214 (262) Q Consensus 172 ~~~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~ 214 (262) .....+ +..++++.+|++ .+.++.-..|.+.|+.++..++-+. T Consensus 23 ~~G~~LPse~~La~~~~vSr~tvr~al~~L~~~G~i~~~~~~G~~ 67 (78) T 2di3_A 23 KIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPR 67 (78) T ss_dssp CTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGG T ss_pred CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCEEEEECCCCCC T ss_conf 981999109999999895999999999998860803416797775 No 83 >>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV} (A:43-106) Probab=46.78 E-value=17 Score=15.73 Aligned_cols=41 Identities=10% Similarity=-0.032 Sum_probs=28.3 Q ss_pred HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC Q ss_conf 54155873239999997389988-899999999789768537 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV 209 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~ 209 (262) .++...+-+++++||+.+++..+ .-..-+-|.+.|+..|.. T Consensus 10 ~~l~~~~~~t~~ela~~~~~~~~t~s~~i~~L~~~glI~r~~ 51 (64) T 2nyx_A 10 VILSNHGPINLATLATLLGVQPSATGRXVDRLVGAELIDRLP 51 (64) T ss_dssp HHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHEEEEE T ss_conf 999857997999999998887877799997350186435653 No 84 >>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A* (A:66-117) Probab=46.39 E-value=17 Score=15.69 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=29.2 Q ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEE Q ss_conf 4155873239999997389988899999999789768 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQV 206 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~ 206 (262) +++.....+..+||+.|| .+...+-.-|.+.|+.. T Consensus 15 lie~D~~~TtreiA~~Ln--vs~~TI~~hLk~iG~v~ 49 (52) T 3hot_A 15 LLDEDDAQTQKQLAEQLE--VSQQAVSNRLREMGKIQ 49 (52) T ss_dssp HHHHCSCCCHHHHHHHTT--SCHHHHHHHHHHTTCEE T ss_pred HHHHCCCCHHHHHHHHHC--CCHHHHHHHHHHCCCEE T ss_conf 999664001899998856--48889999999728723 No 85 >>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.82A {Bacteroides thetaiotaomicron vpi-5482} (A:30-78) Probab=45.35 E-value=8 Score=18.01 Aligned_cols=39 Identities=8% Similarity=0.054 Sum_probs=29.8 Q ss_pred CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 399999973899-888999999997897685379944365 Q gi|254780125|r 178 TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 178 ~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) +..++|+.+++. .+.++..+.|.+.|+.++..+.-+.+. T Consensus 8 s~r~la~~~~vsr~Tv~~a~~~L~~~G~i~~~~g~G~fV~ 47 (49) T 3ic7_A 8 SVREYASIVEVNANTVXRSYEYLQSQEVIYNKRGIGFFVA 47 (49) T ss_dssp CTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETTTEEEEC T ss_pred CHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCEEEEC T ss_conf 8999998759399999999999998896799638778977 No 86 >>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- binding, plasmid, transcription; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A (A:1-91) Probab=45.00 E-value=18 Score=15.55 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=31.8 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHH----HHCCCE-EECCCCCEEECHHHHHHHHHH Q ss_conf 23999999738998889999999----978976-853799443657897543553 Q gi|254780125|r 177 LTITQIGERLNPPQRARFLNKLL----LKRGLQ-VSKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 177 l~~t~iak~l~~~~sa~~~N~lL----~~~g~q-~Rk~~~~W~lt~kg~~~g~~~ 226 (262) -+++..|+.|++ |+-++-+.| ...|.. +.+.++.+.||+.|..+-... T Consensus 17 ~s~s~AA~~L~i--sq~avS~~i~~LE~~~g~~Lf~R~~~~~~lT~~G~~l~~~~ 69 (91) T 3fxq_A 17 GSLRAAAQLLHL--SQPALSAAIQQLEDELKAPLLVRTKRGVSLTSFGQAFMKHA 69 (91) T ss_dssp SCHHHHHHHTTC--CHHHHHHHHHHHHHHHTSCSEEECSSSEEECHHHHHHHHHH T ss_pred CCHHHHHHHHCC--CHHHHHHHHHHHHHHHCCEEEEECCCCEEECHHHHHHHHHH T ss_conf 999999999898--88999999999999859999998499158997375221343 No 87 >>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} (A:1-79) Probab=44.66 E-value=18 Score=15.51 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=29.3 Q ss_pred CCCCCHHHHHHHHCCCCCH-HHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 8732399999973899888-999999997897685379944365 Q gi|254780125|r 174 DEYLTITQIGERLNPPQRA-RFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 174 ~~~l~~t~iak~l~~~~sa-~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) ++..++.+|++.+|++.++ -.--+.|.+.|+......|+|..| T Consensus 32 ~~~~~~~ela~~l~is~~tvS~HL~~L~~aglv~~~~~G~~~~Y 75 (79) T 2oqg_A 32 RADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRY 75 (79) T ss_dssp HSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEE T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEECCEEEE T ss_conf 49987447798868998899999989998897703666898899 No 88 >>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} (A:19-82) Probab=43.59 E-value=19 Score=15.40 Aligned_cols=42 Identities=26% Similarity=0.451 Sum_probs=27.8 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCEEECC-CCCEEE Q ss_conf 55873239999997389988899999---999789768537-994436 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQRARFLNK---LLLKRGLQVSKV-SGGYRP 215 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~sa~~~N~---lL~~~g~q~Rk~-~~~W~l 215 (262) -.+.-+.+++|++.||+ |++-+.. -|.+.|+..|.- ...|.= T Consensus 12 lek~~m~i~eI~keLgl--SeR~VRe~v~~L~r~GllkRelv~~GWlG 57 (64) T 1sfx_A 12 LERGGXRVSEIARELDL--SARFVRDRLKVLLKRGFVRREIVEKGWVG 57 (64) T ss_dssp HHHCCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEEEEESSSEE T ss_pred HCCCCCCHHHHHHHHCC--CCCHHHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 80488879999999756--70189999999995999798742578865 No 89 >>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} (A:) Probab=43.47 E-value=19 Score=15.39 Aligned_cols=51 Identities=22% Similarity=0.079 Sum_probs=38.3 Q ss_pred CCCCCHHHHHHHHCCCCCHHHH---HHHHHHCCCEEECCCCCEEECHHHHHHHHHHC Q ss_conf 8732399999973899888999---99999789768537994436578975435530 Q gi|254780125|r 174 DEYLTITQIGERLNPPQRARFL---NKLLLKRGLQVSKVSGGYRPTPKGEERGGKMC 227 (262) Q Consensus 174 ~~~l~~t~iak~l~~~~sa~~~---N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~~ 227 (262) ..-...|.|+..+|. |-+.+ -..|.+.|+.. ...+...+|++|.++-..+. T Consensus 18 ~~~i~rt~L~~~~nL--s~~~~~~~l~~L~~~GLI~-~~~~~y~lT~kG~~~l~~l~ 71 (95) T 1r7j_A 18 KSGSPKTRIMYGANL--SYALTGRYIKMLMDLEIIR-QEGKQYMLTKKGEELLEDIR 71 (95) T ss_dssp TTCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEE-EETTEEEECHHHHHHHHHHH T ss_pred HCCCCHHHHHHHCCC--CHHHHHHHHHHHHHCCCEE-ECCCEEEECHHHHHHHHHHH T ss_conf 669986488998099--9999999999999888925-26984798751899999999 No 90 >>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics, NPPSFA; HET: MSE; 1.94A {Pyrococcus horikoshii OT3} (A:278-348) Probab=43.19 E-value=19 Score=15.36 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=35.3 Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 732399999973899888999999997897685379944365 Q gi|254780125|r 175 EYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 175 ~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) -.++...+.+.+|+..+...+.+.|...|+.....++.|..+ T Consensus 6 i~~~~~~i~~~lG~~i~~~~i~~~L~~lg~~v~~~~~~~~V~ 47 (71) T 2cxi_A 6 FEVELDYIRKLSGLELNDGEIKELLEKXXYEVEISRGRAKLK 47 (71) T ss_dssp EEEEHHHHHHHHTCCCCHHHHHHHHHHTTCEEEEETTEEEEE T ss_pred EEECHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCEEEEE T ss_conf 997899998885886799999999998799799649839998 No 91 >>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, PSI-2, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} (A:23-111) Probab=42.55 E-value=20 Score=15.30 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=40.0 Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCC--CEEECHHHHHHHHHHCC Q ss_conf 732399999973899888999999---9978976853799--44365789754355304 Q gi|254780125|r 175 EYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSG--GYRPTPKGEERGGKMCD 228 (262) Q Consensus 175 ~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~--~W~lt~kg~~~g~~~~~ 228 (262) ......++.+.+. ++|.+.+++. |.+.|+..|.... .+.||++|++..+.... T Consensus 19 ~~~rF~el~~~i~-~is~~~Ls~~Lk~L~~~glv~r~~p~~veY~LT~~G~~l~~~l~~ 76 (89) T 3df8_A 19 TRQNFNDIRSSIP-GISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGXNVRNSLXP 76 (89) T ss_dssp SCBCHHHHHHTST-TCCHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHHHHH T ss_pred CCCCHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHEECCCCEEEEECCCHHHHHHHHHH T ss_conf 9887999985487-776036999999999856440127996478759478889999999 No 92 >>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01} (A:1-88) Probab=42.16 E-value=20 Score=15.26 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=36.7 Q ss_pred CCCHHHHHHHHCCCCC--HHHHHHHHHHCCCEE--ECCCCCEEECHHHHHHHHHH Q ss_conf 3239999997389988--899999999789768--53799443657897543553 Q gi|254780125|r 176 YLTITQIGERLNPPQR--ARFLNKLLLKRGLQV--SKVSGGYRPTPKGEERGGKM 226 (262) Q Consensus 176 ~l~~t~iak~l~~~~s--a~~~N~lL~~~g~q~--Rk~~~~W~lt~kg~~~g~~~ 226 (262) +-+++..|+.|+++.+ .+.+..|=...|... |..++.+.||+.|+.+-... T Consensus 18 ~gs~s~AA~~L~isq~avs~~i~~LE~~lg~~Lf~R~~~r~~~lT~~G~~l~~~~ 72 (88) T 3fzv_A 18 CGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKA 72 (88) T ss_dssp SSSHHHHHHHHTCCC-CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHHH T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCCCC T ss_conf 0999999999887888999999999998299689977997044346651453344 No 93 >>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} (A:) Probab=41.80 E-value=20 Score=15.22 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=30.6 Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC--CEEE Q ss_conf 15587323999999738998889999999---978976853799--4436 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG--GYRP 215 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~--~W~l 215 (262) +-..+..++-+|||.|| ++-+.+|+.| .+.|..++..+. .|.+ T Consensus 24 L~~~~~~tA~~lAk~Lg--~~Kk~VNr~LY~L~~~G~v~~~~~~PP~W~l 71 (75) T 1sfu_A 24 LNTNDYTTAISLSNRLK--INKKKINQQLYKLQKEDTVKMVPSNPPKWFK 71 (75) T ss_dssp SCTTCEECHHHHHHHTT--CCHHHHHHHHHHHHHTTSEEEECCSSCEEEE T ss_pred CCCCCCCHHHHHHHHHC--CHHHHHHHHHHHHHHCCEEEEECCCCCHHHH T ss_conf 87544221999998863--0087888999999868965442499936765 No 94 >>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} (A:1-89) Probab=41.80 E-value=20 Score=15.22 Aligned_cols=51 Identities=16% Similarity=0.131 Sum_probs=36.8 Q ss_pred HHHHHHCCCCCCCHHHHHHHHCCCCCHHH---HHHHHHHCCCEEECCCCCEEECHHHH Q ss_conf 66654155873239999997389988899---99999978976853799443657897 Q gi|254780125|r 166 KHLPSSDNDEYLTITQIGERLNPPQRARF---LNKLLLKRGLQVSKVSGGYRPTPKGE 220 (262) Q Consensus 166 ~~d~~~~~~~~l~~t~iak~l~~~~sa~~---~N~lL~~~g~q~Rk~~~~W~lt~kg~ 220 (262) .+|.+. .+..++.++|+..|. .... +-+.|...|+..+...+.|.+|+.+. T Consensus 33 ifd~l~--~g~~t~~eLa~~~g~--~~~~l~rllr~l~~~g~~~e~~~~~y~~t~~s~ 86 (89) T 2ip2_A 33 LADLIE--SGIDSDETLAAAVGS--DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSH 86 (89) T ss_dssp HHHHHH--TTCCSHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEEETTTEEEECHHHH T ss_pred HHHHHH--CCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHH T ss_conf 878985--699999999988594--989999999999868976753675232580676 No 95 >>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint center for structural genomics; HET: MSE; 1.92A {Ralstonia eutropha JMP134} (A:1-82) Probab=40.63 E-value=21 Score=15.10 Aligned_cols=46 Identities=13% Similarity=-0.008 Sum_probs=36.0 Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 155873239999997389988-8999999997897685379944365 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) ......+.-.++|+.++++.+ .++.-..|...|+..+..+..|.+. T Consensus 34 ~~~G~~l~e~~La~~~~vSr~~vr~Al~~L~~~Gli~~~~~~G~~V~ 80 (82) T 3ihu_A 34 FVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRHRGAVIR 80 (82) T ss_dssp SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSTTCEEEC T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCEEEE T ss_conf 99919669999999989888999999999997898476358825997 No 96 >>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} (A:142-183) Probab=40.19 E-value=18 Score=15.67 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=18.2 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 23999999738998889999999978 Q gi|254780125|r 177 LTITQIGERLNPPQRARFLNKLLLKR 202 (262) Q Consensus 177 l~~t~iak~l~~~~sa~~~N~lL~~~ 202 (262) +.+++||+.||++. ..+.+.|.+. T Consensus 18 ~g~t~IAk~LgI~R--~sVYriL~~~ 41 (42) T 1gdt_A 18 LGASHISKTMNIAR--STVYKVINES 41 (42) T ss_dssp CCHHHHHHHHTCCH--HHHHHHHHSC T ss_pred CCHHHHHHHHCCCH--HHHHHHHHHC T ss_conf 99999999989299--9999999704 No 97 >>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A (A:1-121) Probab=39.52 E-value=22 Score=14.99 Aligned_cols=55 Identities=24% Similarity=0.061 Sum_probs=38.7 Q ss_pred CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 55873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) -+.+-+++++|++.+++..+ ...+-+.|.+.|+..|.... .-.||++|.++.... T Consensus 46 l~~~~~t~~~la~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~lT~kG~~~~~~~ 107 (121) T 2gxg_A 46 TSDGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG 107 (121) T ss_dssp HTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH T ss_pred HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHEECCCHHHHHHHHHH T ss_conf 98599799999999897987999999999878882342365556401001457689999999 No 98 >>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} (A:1-139) Probab=38.81 E-value=23 Score=14.91 Aligned_cols=65 Identities=15% Similarity=0.036 Sum_probs=41.8 Q ss_pred CHHHHHHHHH-CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 0134666541-55873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 162 AMDIKHLPSS-DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 162 pk~~~~d~~~-~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) +........+ ....-+++++||+.+++..+ ...+-+.|.+.|+..|..+. .-.||++|..+-... T Consensus 53 ~~~~~iL~~l~~~~~~~t~~~La~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 125 (139) T 3deu_A 53 QTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEM 125 (139) T ss_dssp HHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECHHHHHHHHHH T ss_conf 9999999999976989999999999896998999999999969887986206898757889898899999999 No 99 >>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis} (A:16-135) Probab=38.13 E-value=23 Score=14.84 Aligned_cols=34 Identities=12% Similarity=0.238 Sum_probs=23.7 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHH---HHHHCCCEEE Q ss_conf 55873239999997389988899999---9997897685 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQRARFLNK---LLLKRGLQVS 207 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~sa~~~N~---lL~~~g~q~R 207 (262) .....-++..||+.+| +|.+.+++ .|.+.|+..+ T Consensus 32 ~g~~~pS~~~iA~~~g--~s~~tV~~~l~~L~~~Gli~~ 68 (120) T 2v79_A 32 KGSYFPTPNQLQEGMS--ISVEECTNRLRMFIQKGFLFI 68 (120) T ss_dssp TTCCSCCHHHHHTTSS--SCHHHHHHHHHHHHHHTSCEE T ss_pred CCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCCEEE T ss_conf 6999989999999969--899999999999998899799 No 100 >>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus} (A:1-122) Probab=37.68 E-value=23 Score=14.80 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=36.4 Q ss_pred CCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCC------CEEECHHHHHHHHHH Q ss_conf 5873239999997389988-89999999978976853799------443657897543553 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSG------GYRPTPKGEERGGKM 226 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~------~W~lt~kg~~~g~~~ 226 (262) ...-+++++||+.+++..+ ....-+-|.+.|+..|..+. .-.||++|..+-... T Consensus 47 ~~~~~t~~ela~~~~~~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~LT~~G~~~~~~~ 107 (122) T 3f3x_A 47 SEEPRSMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEA 107 (122) T ss_dssp HHSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHH T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCHHCCCCHHHHHHHHHH T ss_conf 9299199999999797886899999999967880131355455301213389899999999 No 101 >>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} (A:29-94) Probab=37.68 E-value=23 Score=14.80 Aligned_cols=42 Identities=14% Similarity=-0.036 Sum_probs=28.2 Q ss_pred HHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC Q ss_conf 654155873239999997389988-899999999789768537 Q gi|254780125|r 168 LPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV 209 (262) Q Consensus 168 d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~ 209 (262) ...+...+-+++++||+.+++..+ .-.+-+-|.+.|+..|.. T Consensus 11 L~~l~~~~~~t~~~la~~~~~s~~~~s~~i~~L~~~Glv~r~~ 53 (66) T 2a61_A 11 LQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTP 53 (66) T ss_dssp HHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE T ss_pred HHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEC T ss_conf 9999876998999999882989889999999997246866423 No 102 >>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54) Probab=37.13 E-value=24 Score=14.74 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=20.7 Q ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 7323999999738998889999999978 Q gi|254780125|r 175 EYLTITQIGERLNPPQRARFLNKLLLKR 202 (262) Q Consensus 175 ~~l~~t~iak~l~~~~sa~~~N~lL~~~ 202 (262) .-++-.+||+.+| .|-..++++|.++ T Consensus 20 ~gltQ~eIA~~lg--iSR~~VsRlL~~A 45 (54) T 2w48_A 20 QDMTQAQIARELG--IYRTTISRLLKRG 45 (54) T ss_dssp SCCCHHHHHHHTT--CCHHHHHHHHHHH T ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHH T ss_conf 4999999999869--8999999999999 No 103 >>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} (A:35-101) Probab=36.83 E-value=24 Score=14.71 Aligned_cols=38 Identities=13% Similarity=0.036 Sum_probs=26.5 Q ss_pred CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC Q ss_conf 55873239999997389988-899999999789768537 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV 209 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~ 209 (262) .+..-+++++||+.+++..+ ...+-+-|.+.|+..|.. T Consensus 14 ~~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~G~I~r~~ 52 (67) T 2fbh_A 14 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLA 52 (67) T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC T ss_pred HCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEC T ss_conf 759996599999998978988999999997656614404 No 104 >>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.63A {Escherichia coli CFT073} (A:1-46) Probab=36.57 E-value=24 Score=14.68 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=20.1 Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHH Q ss_conf 32399999973899888999999997 Q gi|254780125|r 176 YLTITQIGERLNPPQRARFLNKLLLK 201 (262) Q Consensus 176 ~l~~t~iak~l~~~~sa~~~N~lL~~ 201 (262) -++.+++|+.+| +|...+|.++.. T Consensus 21 gis~~~lA~~lg--vs~~~is~ii~G 44 (46) T 2ict_A 21 NVSLREFARAXE--IAPSTASRLLTG 44 (46) T ss_dssp TCCHHHHHHHHT--CCHHHHHHHHHT T ss_pred CCCHHHHHHHHH--HHHHHHHHHHCC T ss_conf 999999999997--778999999806 No 105 >>3dbw_A Transcriptional regulator, GNTR family; structural genomics, surface entropy reduction, PSI-2, protein structure initiative; 2.20A {Thermotoga maritima MSB8} PDB: 3fms_A* (A:) Probab=35.92 E-value=25 Score=14.61 Aligned_cols=50 Identities=10% Similarity=0.136 Sum_probs=25.4 Q ss_pred CCEEEEECHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 31068971877999998579965799999888978999996077577533 Q gi|254780125|r 63 IQKVRIISEPDVYRLLVKSTLPSAQKFERWVFEEVLPTLRKTGSYSVEAP 112 (262) Q Consensus 63 ~~~~~~i~E~gly~Li~~s~~p~A~~F~~Wv~~eVLPsIRktG~Y~~~~~ 112 (262) -+....++|.-|-+..--|+.+.-+.++.-...-+|-..+.-|.|..+.. T Consensus 38 l~pG~~Lpe~~La~~~gVSR~tVReAl~~L~~eGli~~~~g~g~~V~~~~ 87 (226) T 3dbw_A 38 LKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRVGFFVTDVD 87 (226) T ss_dssp SCTTCBCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTTEEEECCCC T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCH T ss_conf 99809779999999989199999999999997897685369865455312 No 106 >>1fy7_A ESA1 histone acetyltransferase; coenzyme A; HET: COA; 2.00A {Saccharomyces cerevisiae} (A:156-278) Probab=35.22 E-value=26 Score=14.54 Aligned_cols=73 Identities=10% Similarity=0.036 Sum_probs=45.3 Q ss_pred HHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCEEEC--HHHHHHHHHHCCCCCCCCCCCCEEEEECHHH Q ss_conf 41558732399999973899888999999997897685379944365--7897543553047534688331167545017 Q gi|254780125|r 170 SSDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQVSKVSGGYRPT--PKGEERGGKMCDVPMQHVEGSTQQLKWNSNL 247 (262) Q Consensus 170 ~~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~Rk~~~~W~lt--~kg~~~g~~~~~~p~~~~g~~~~q~~w~~~v 247 (262) +.+.++.+++.+|++.-+ +....+-.-|...|+.. ...+++.+. .+..+.-.....++.-. -....+.|+|-| T Consensus 49 L~~~~~~isi~dis~~T~--i~~~DIi~tL~~l~~l~-~~~~~~~i~~~~~~i~~~~~~~~k~~~~--idp~~L~W~P~v 123 (123) T 1fy7_A 49 LVEHQKEITIDEISSMTS--MTTTDILHTAKTLNILR-YYKGQHIIFLNEDILDRYNRLKAKKRRT--IDPNRLIWKPPV 123 (123) T ss_dssp HHHTCSEEEHHHHHHHHC--BCHHHHHHHHHHHTCEE-EETTEEEEECCHHHHHHHHHHHHTCCCC--CCGGGBCCCCC- T ss_pred HHHHCCCEEHHHHHHHHC--CCHHHHHHHHHHHCHHH-HHCCCEEEEECHHHHHHHHHHCCCCCCC--CCCCCCEECCCC T ss_conf 986067167999764306--64798999998837776-3368679992999999999864899974--385632438999 No 107 >>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis} (A:1-75) Probab=34.82 E-value=26 Score=14.50 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=22.4 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCEE Q ss_conf 55873239999997389988899999999789768 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQV 206 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~ 206 (262) ....+|+..++|+.||+ +..++.+||.+..+.- T Consensus 27 ~de~~LtlpevAe~Lgv--~vtrV~~Lird~~Lia 59 (75) T 2kfs_A 27 PDEPTYDLPRVAELLGV--PVSKVAQQLREGHLVA 59 (75) T ss_dssp TTSCEEEHHHHHHHHTC--CHHHHHHHHHTTSCCC T ss_pred CCCCCCCHHHHHHHHCC--CHHHHHHHHHCCCEEE T ss_conf 77663489999999698--8899999998794799 No 108 >>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} (A:401-487) Probab=34.63 E-value=26 Score=14.48 Aligned_cols=55 Identities=13% Similarity=-0.087 Sum_probs=35.5 Q ss_pred CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH Q ss_conf 55873239999997389988-8999999997897685379------9443657897543553 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262) ...+.+++++||+.+++..+ ...+-+.|.+.|+..|... ..-.||++|...-... T Consensus 16 ~~~~~~t~~~l~~~l~~~~~~vs~~i~~L~~~g~i~r~~~~~D~R~~~i~LT~~G~~~~~~~ 77 (87) T 1hsj_A 16 SESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 77 (87) T ss_dssp CSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH T ss_pred HCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHHHHHHHH T ss_conf 61578649999864167811204889887751210111357651079999627678779999 No 109 >>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} (A:1-82) Probab=34.40 E-value=26 Score=14.45 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=32.7 Q ss_pred CCCCC-CHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 58732-3999999738998-88999999997897685379944365 Q gi|254780125|r 173 NDEYL-TITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 173 ~~~~l-~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) ....+ +..++|+.+|+++ +.++.-..|...|+..+..+....+. T Consensus 25 ~G~~LPs~~~la~~~~vSr~tvr~Al~~L~~~G~i~~~~~~G~~V~ 70 (82) T 3bwg_A 25 QGDKLPVLETLXAQFEVSKSTITKSLELLEQKGAIFQVRGSGIFVR 70 (82) T ss_dssp TTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEC T ss_conf 9299906999999989399999999999998612151488557999 No 110 >>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} (A:1-127) Probab=32.32 E-value=28 Score=14.23 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=41.6 Q ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC------CCEEECHHHHHHHHHH Q ss_conf 013466654155873239999997389988-8999999997897685379------9443657897543553 Q gi|254780125|r 162 AMDIKHLPSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS------GGYRPTPKGEERGGKM 226 (262) Q Consensus 162 pk~~~~d~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~------~~W~lt~kg~~~g~~~ 226 (262) +........+...+-+++++||+.+++..+ ...+-+.|.+.|+..|... ..-.||++|.+.-... T Consensus 42 ~~~~~iL~~i~~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~glV~r~~~~~DkR~~~l~LT~~G~~~~~~~ 113 (127) T 2rdp_A 42 PPQFVALQWLLEEGDLTVGELSNKXYLACSTTTDLVDRXERNGLVARVRDEHDRRVVRIRLLEKGERIIEEV 113 (127) T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCHHHHHHHHHH T ss_conf 999999999997799499999998784524488999989978865100124556401110048799999999 No 111 >>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} (A:1-78) Probab=32.30 E-value=28 Score=14.22 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=34.0 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHHH---HHCCCEEECCCC------CEEECHHH Q ss_conf 5587323999999738998889999999---978976853799------44365789 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQRARFLNKLL---LKRGLQVSKVSG------GYRPTPKG 219 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~sa~~~N~lL---~~~g~q~Rk~~~------~W~lt~kg 219 (262) -..+....+++.+.+. ++|.+.++..| .+.|+..|..-. .+.||++| T Consensus 23 l~~g~~rF~el~r~l~-gis~~~Ls~~Lk~L~~~glv~r~~~~~~p~~v~Y~LT~~G 78 (78) T 2hzt_A 23 LTHGKKRTSELKRLXP-NITQKXLTQQLRELEADGVINRIVYNQVPPKVEYELSEYG 78 (78) T ss_dssp HTTCCBCHHHHHHHCT-TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTG T ss_pred HHCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH T ss_conf 9819985999996761-5474889999999999898872265788861055753708 No 112 >>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} (A:1-94) Probab=32.17 E-value=29 Score=14.21 Aligned_cols=46 Identities=15% Similarity=0.142 Sum_probs=35.5 Q ss_pred HCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 155873239999997389988-8999999997897685379944365 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) +.....+.-.++|+.+|++.+ .++.-+.|...|+..+..+..|.+. T Consensus 46 l~~G~~l~e~~La~~~~vSr~tvR~al~~L~~~Gli~~~~~~G~~V~ 92 (94) T 2hs5_A 46 FRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELNRGVFVR 92 (94) T ss_dssp SCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTTEEEEC T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99909869999999979599999999999998878631226776220 No 113 >>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis} (A:1-82) Probab=32.15 E-value=29 Score=14.21 Aligned_cols=43 Identities=19% Similarity=0.114 Sum_probs=32.3 Q ss_pred CCCC-CHHHHHHHHCCC-CCHHHHHHHHHHCCCEEECCCCCEEEC Q ss_conf 8732-399999973899-888999999997897685379944365 Q gi|254780125|r 174 DEYL-TITQIGERLNPP-QRARFLNKLLLKRGLQVSKVSGGYRPT 216 (262) Q Consensus 174 ~~~l-~~t~iak~l~~~-~sa~~~N~lL~~~g~q~Rk~~~~W~lt 216 (262) ...+ +..++|+.+|+. .+.++.-..|.+.|+..+..++.+... T Consensus 31 G~~LPs~~~La~~~~vSr~tvr~Al~~L~~~gli~~~~~~G~~V~ 75 (82) T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS 75 (82) T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTSCEEEC T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCC T ss_conf 399936999999979699999999999997798899888335027 No 114 >>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} (A:50-100) Probab=31.83 E-value=29 Score=14.17 Aligned_cols=33 Identities=15% Similarity=0.089 Sum_probs=22.6 Q ss_pred CCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECC Q ss_conf 239999997389988-899999999789768537 Q gi|254780125|r 177 LTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKV 209 (262) Q Consensus 177 l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~ 209 (262) +++.+||+.+++..+ .-.+-..|.+.||.+|.. T Consensus 2 it~~~la~~l~~~~~t~s~~i~~Le~~gli~r~~ 35 (51) T 3bro_A 2 VLQRDLESEFSIKSSTATVLLQRXEIKKLLYRKV 35 (51) T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE T ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 8999999887778236999999998888877501 No 115 >>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} (A:) Probab=30.74 E-value=30 Score=14.05 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=31.2 Q ss_pred CCCC-CHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCCEEE Q ss_conf 8732-39999997389988-899999999789768537994436 Q gi|254780125|r 174 DEYL-TITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGGYRP 215 (262) Q Consensus 174 ~~~l-~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~W~l 215 (262) ...| +..++++.+|++.+ .++.-..|...|+.++..+..+.. T Consensus 32 G~~LPs~~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~~~G~~V 75 (102) T 1v4r_A 32 GDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGALGTVV 75 (102) T ss_dssp TSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETTTEEES T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCEEEE T ss_conf 69986899999997979999999999999889679974877998 No 116 >>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} (A:156-250) Probab=30.40 E-value=31 Score=14.02 Aligned_cols=55 Identities=11% Similarity=0.094 Sum_probs=35.7 Q ss_pred CCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCC-----C-CEEECHHHHHHHHHH Q ss_conf 55873239999997389988-8999999997897685379-----9-443657897543553 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVS-----G-GYRPTPKGEERGGKM 226 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~-----~-~W~lt~kg~~~g~~~ 226 (262) ...+.+++++||+.+++..+ ..++-+-|.+.|+..|... . .-.+|++|...-... T Consensus 15 ~~~~~~t~~~la~~l~~~~~~~s~~i~~L~~~G~I~r~~~~~D~R~~~i~lT~~g~~~~~~~ 76 (95) T 1p4x_A 15 QNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 76 (95) T ss_dssp TTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHH T ss_conf 99996769999999788851599999999988998972799888705989898899999999 No 117 >>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} (A:10-83) Probab=30.30 E-value=31 Score=14.00 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=26.1 Q ss_pred CCCCCCHHHHHHHHCCCCCHH-HHHHHHHHCCCEEECCCCCE Q ss_conf 587323999999738998889-99999997897685379944 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRAR-FLNKLLLKRGLQVSKVSGGY 213 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa~-~~N~lL~~~g~q~Rk~~~~W 213 (262) ..+..++++|+..+|++.+.. .--+.|.++|+......++| T Consensus 21 ~~~~~~~~eia~~l~is~~tvS~HL~~L~~aglI~~~~~g~~ 62 (74) T 1uly_A 21 RNKEXTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEXK 62 (74) T ss_dssp TTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEE T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEEECC T ss_conf 829968999999989099999999999988898489986044 No 118 >>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} (A:) Probab=28.58 E-value=33 Score=13.81 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=22.8 Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHCCCE Q ss_conf 323999999738998889999999978976 Q gi|254780125|r 176 YLTITQIGERLNPPQRARFLNKLLLKRGLQ 205 (262) Q Consensus 176 ~l~~t~iak~l~~~~sa~~~N~lL~~~g~q 205 (262) +=++++.|+.||+ +-.-+++.|.+.||. T Consensus 33 ~gn~~~aA~~Lgi--sr~tL~rklkk~gi~ 60 (61) T 1g2h_A 33 YPSTRKLAQRLGV--SHTAIANKLKQYGIG 60 (61) T ss_dssp SCSHHHHHHHTTS--CTHHHHHHHHTTTCC T ss_pred CCCHHHHHHHHCC--CHHHHHHHHHHHCCC T ss_conf 8738999999586--189999899984658 No 119 >>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102} (A:1-56) Probab=28.44 E-value=33 Score=13.79 Aligned_cols=25 Identities=8% Similarity=0.166 Sum_probs=20.4 Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHC Q ss_conf 323999999738998889999999978 Q gi|254780125|r 176 YLTITQIGERLNPPQRARFLNKLLLKR 202 (262) Q Consensus 176 ~l~~t~iak~l~~~~sa~~~N~lL~~~ 202 (262) -++.+++|+.+| .+...+|.+|... T Consensus 31 gis~~~lA~~lg--vs~~~is~Ii~gk 55 (56) T 3cec_A 31 DINTANFAEILG--VSNQTIQEVINGQ 55 (56) T ss_dssp TCCHHHHHHHHT--SCHHHHHHHHTTS T ss_pred CCCHHHHHHHHC--CCHHHHHHHHCCC T ss_conf 999999999978--2789999998177 No 120 >>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} (A:410-583) Probab=28.25 E-value=14 Score=16.30 Aligned_cols=50 Identities=14% Similarity=0.040 Sum_probs=32.4 Q ss_pred HHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCC---EEECHH Q ss_conf 5415587323999999738998-8899999999789768537994---436578 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGG---YRPTPK 218 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~---W~lt~k 218 (262) .++...+.++..++++.+|++. ++...=+-|.+.|+..+..+++ |.+.++ T Consensus 114 ~~l~~~~~it~~ei~~~~gis~~ti~r~L~~L~~~G~i~~~g~gr~~~Y~l~~~ 167 (174) T 3lmm_A 114 LWLSEVGDLATSDLXAXCGVSRGTAKACVDGLVDEERVVAVGGGRSRRYRLVEL 167 (174) T ss_dssp ------------------------------------------------------ T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEEE T ss_conf 999977993999999997949999999999999889779856788618999751 No 121 >>1bm8_A Transcription factor MBP1; cell cycle, cyclins, DNA synthesis, helix-turn-helix DNA- binding domain; 1.71A {Saccharomyces cerevisiae} (A:) Probab=27.52 E-value=34 Score=13.69 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=23.7 Q ss_pred CCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCC---EEECCC------CCEEECHHHHHHHHH Q ss_conf 58732399999973899888999999997897---685379------944365789754355 Q gi|254780125|r 173 NDEYLTITQIGERLNPPQRARFLNKLLLKRGL---QVSKVS------GGYRPTPKGEERGGK 225 (262) Q Consensus 173 ~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~---q~Rk~~------~~W~lt~kg~~~g~~ 225 (262) +.+.+++|+|-|..++ +--...++|..... .++-++ |.|.|++.+...... T Consensus 27 ~d~~VN~T~ilK~a~~--~K~~rtkiLe~e~~~~~h~kVqGG~~~~QGtWiP~~~A~~lA~~ 86 (99) T 1bm8_A 27 KDDWVNATHILKAANF--AKAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAEK 86 (99) T ss_dssp TTCCEEHHHHHHHTTC--CHHHHHHHHHHHTTTSSCEEESSSCSTTCEEEECHHHHHHHHHH T ss_pred CCCCEEHHHHHHHCCC--CCCCHHHHHHCHHHCCCCEEECCCCCCEEEEEECHHHHHHHHHH T ss_conf 9991978896534289--83302344322131166265216876315899689999999998 No 122 >>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A* (A:1-53) Probab=25.24 E-value=37 Score=13.41 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=25.1 Q ss_pred HHHCCCCCCCHHHHHHHHCCCCCHHHHH---HHHHHCCCE Q ss_conf 5415587323999999738998889999---999978976 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQRARFLN---KLLLKRGLQ 205 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~sa~~~N---~lL~~~g~q 205 (262) ..+...+.++..+||+.+|+ |...+. +-|.+.|+. T Consensus 10 ~~L~~d~r~~~~elA~~lgv--S~~tv~~ri~~L~~~GiI 47 (53) T 2pn6_A 10 KILQYNAKYSLDEIAREIRI--PKATLSYRIKKLEKDGVI 47 (53) T ss_dssp HHHTTCTTSCHHHHHHHHTS--CHHHHHHHHHHHHHTTSS T ss_pred HHHHHCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCHHH T ss_conf 99998599999999999891--999999999999723034 No 123 >>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis} (A:) Probab=24.66 E-value=38 Score=13.34 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=33.2 Q ss_pred HCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHCCCE--EECCCCCEEECH Q ss_conf 15587323999999738998889999999978976--853799443657 Q gi|254780125|r 171 SDNDEYLTITQIGERLNPPQRARFLNKLLLKRGLQ--VSKVSGGYRPTP 217 (262) Q Consensus 171 ~~~~~~l~~t~iak~l~~~~sa~~~N~lL~~~g~q--~Rk~~~~W~lt~ 217 (262) ...+.++++.+.|+-||+ |-..+.+|.++..+- +-+.++.|..-. T Consensus 11 ~~ek~~ltv~Eaa~ylgi--s~~~ly~l~~~~~ip~~~~k~G~~~li~r 57 (70) T 1y6u_A 11 IWERYTLTIEEASKYFRI--GENKLRRLAEENKNANWLIMNGNRIQIKR 57 (70) T ss_dssp TTTSSEEEHHHHHHHTCS--CHHHHHHHHHHCTTCSSEEEETTEEEEES T ss_pred CHHHHEECHHHHHHHHCC--CHHHHHHHHHHCCCCCCEEEECCEEEEEH T ss_conf 027440579999999550--49999999985889980899567898879 No 124 >>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} (A:) Probab=23.73 E-value=40 Score=13.22 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=19.7 Q ss_pred CCCHHHHHHHHHHCCCEEECCCCC Q ss_conf 988899999999789768537994 Q gi|254780125|r 189 PQRARFLNKLLLKRGLQVSKVSGG 212 (262) Q Consensus 189 ~~sa~~~N~lL~~~g~q~Rk~~~~ 212 (262) +|+.+.+-++|...|+.+..++|. T Consensus 4 ~~k~~elik~L~~~Gf~~~r~~Gs 27 (70) T 1whz_A 4 PPRPEEVARKLRRLGFVERXAKGG 27 (70) T ss_dssp CCCHHHHHHHHHHTTCEEEEEETT T ss_pred CCCHHHHHHHHHHCCCEEECCCCC T ss_conf 988999999999889289624785 No 125 >>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} (A:) Probab=23.50 E-value=40 Score=13.19 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=24.0 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCCCEE Q ss_conf 239999997389988899999999789768 Q gi|254780125|r 177 LTITQIGERLNPPQRARFLNKLLLKRGLQV 206 (262) Q Consensus 177 l~~t~iak~l~~~~sa~~~N~lL~~~g~q~ 206 (262) -+++..|+.|| +|-..+...|.+.||.. T Consensus 33 gn~~~aA~~Lg--isr~tL~~klkk~gi~~ 60 (63) T 3e7l_A 33 YDLKRTAEEIG--IDLSNLYRKIKSLNIRV 60 (63) T ss_dssp TCHHHHHHHHT--CCHHHHHHHHHHTTCCC T ss_pred CCHHHHHHHHC--CCHHHHHHHHHHHCCCC T ss_conf 98999999989--59999999999948995 No 126 >>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} (A:) Probab=23.14 E-value=29 Score=14.19 Aligned_cols=27 Identities=19% Similarity=0.062 Sum_probs=21.5 Q ss_pred CCHHHHHHHHCCCCCHHHHHHHHHHCCCE Q ss_conf 23999999738998889999999978976 Q gi|254780125|r 177 LTITQIGERLNPPQRARFLNKLLLKRGLQ 205 (262) Q Consensus 177 l~~t~iak~l~~~~sa~~~N~lL~~~g~q 205 (262) -+++.+|+.||+ |-.-+.+.|.+.||+ T Consensus 65 gn~~~aA~~LGi--sR~TL~rklkk~gi~ 91 (91) T 1ntc_A 65 GHKQEAARLLGW--GAATLTAKLKELGME 91 (91) T ss_dssp TCTTHHHHHTTC--CHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHCC--CHHHHHHHHHHHCCC T ss_conf 949999999798--999999999987849 No 127 >>2p8t_A Hypothetical protein PH0730; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.80A {Pyrococcus horikoshii OT3} (A:) Probab=22.63 E-value=42 Score=13.08 Aligned_cols=49 Identities=31% Similarity=0.160 Sum_probs=34.8 Q ss_pred CCCCCCCHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCCCEEECHHHHHHH Q ss_conf 558732399999973899888999999---9978976853799443657897543 Q gi|254780125|r 172 DNDEYLTITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSGGYRPTPKGEERG 223 (262) Q Consensus 172 ~~~~~l~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~~W~lt~kg~~~g 223 (262) -+..-++-.+||+.||+ |-..++++ +.+.|+..- ....-.+|++|...- T Consensus 26 yy~e~~tq~eIA~~Lgi--Sr~~V~r~L~~a~~~GlV~i-~i~~~~~t~~G~~~~ 77 (200) T 2p8t_A 26 LLKEPLGRKQISERLEL--GEGSVRTLLRKLSHLDIIRS-KQRGHFLTLKGKEIR 77 (200) T ss_dssp HTTSCBCHHHHHHHHTC--CHHHHHHHHHHHHHTTSEEE-C--CEEECHHHHHHH T ss_pred HHCCCCCHHHHHHHHCC--CHHHHHHHHHHHHHCCCEEE-CCCCCEECHHHHHHH T ss_conf 83488558999988098--27899999999976896896-178628847189999 No 128 >>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} (A:) Probab=21.53 E-value=44 Score=12.93 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=24.4 Q ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHCCCEE Q ss_conf 3239999997389988899999999789768 Q gi|254780125|r 176 YLTITQIGERLNPPQRARFLNKLLLKRGLQV 206 (262) Q Consensus 176 ~l~~t~iak~l~~~~sa~~~N~lL~~~g~q~ 206 (262) ..++.++|..+| ++.-++-.-|.++|+.. T Consensus 2 ~~TV~qlA~ev~--~~vdrLleQl~~AGi~k 30 (49) T 1nd9_A 2 DVTIKTLAAERQ--TSVERLVQQFADAGIRK 30 (49) T ss_dssp EECTTHHHHHHS--SSHHHHHHHHHHHTSCC T ss_pred CCCHHHHHHHHC--CCHHHHHHHHHHCCCCC T ss_conf 444999999989--59999999999928999 No 129 >>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* (A:61-117) Probab=21.40 E-value=44 Score=12.92 Aligned_cols=46 Identities=15% Similarity=0.119 Sum_probs=30.1 Q ss_pred CHHHHHHHHCCCCCHHHHHHH---HHHCCCEEECCCCCEEECHHHHHHHHHHCCCC Q ss_conf 399999973899888999999---99789768537994436578975435530475 Q gi|254780125|r 178 TITQIGERLNPPQRARFLNKL---LLKRGLQVSKVSGGYRPTPKGEERGGKMCDVP 230 (262) Q Consensus 178 ~~t~iak~l~~~~sa~~~N~l---L~~~g~q~Rk~~~~W~lt~kg~~~g~~~~~~p 230 (262) ....+|...+ .-..++-.| |+..|+. +..++.|.|| ++...|+.++ T Consensus 6 d~~tLA~~~~--avP~RL~mLLeaLrQigi~-~~~~gkWsLT----pfA~~mF~p~ 54 (57) T 1x19_A 6 DLATLAADTG--SVPPRLEMLLETLRQMRVI-NLEDGKWSLT----EFADYMFSPT 54 (57) T ss_dssp CHHHHHHHHT--CCHHHHHHHHHHHHHTTSE-EEETTEEEEC----HHHHHHSSSS T ss_pred CHHHHHHHHC--CCHHHHHHHHHHHHHCCCE-EEECCEEECC----HHHHHHHCCC T ss_conf 9999998879--0999999999999877968-9669978529----8899982687 No 130 >>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis} (A:1-96) Probab=21.35 E-value=44 Score=12.91 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=30.7 Q ss_pred CCCCCC-CHHHHHHHHCCCCC-HHHHHHHHHHCCCEEECCCCC Q ss_conf 558732-39999997389988-899999999789768537994 Q gi|254780125|r 172 DNDEYL-TITQIGERLNPPQR-ARFLNKLLLKRGLQVSKVSGG 212 (262) Q Consensus 172 ~~~~~l-~~t~iak~l~~~~s-a~~~N~lL~~~g~q~Rk~~~~ 212 (262) .....| +..++|+.+|++.+ .++.-.+|.+.|+.++..+.- T Consensus 48 ~pG~~LPs~~~La~~~gvsr~tvr~Al~~L~~~Gli~~~~~~G 90 (96) T 3eet_A 48 PPHTRLPSQARIREEYGVSDTVALEARKVLXAEGLVEGRSGSG 90 (96) T ss_dssp CTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC-- T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCE T ss_conf 9939991799999998959999999999999836606158826 No 131 >>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} (A:1-77) Probab=20.95 E-value=45 Score=12.85 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=25.4 Q ss_pred HHHCCCCCCCHHHHHHHHCCCCC-HHHHHHHHHHCCCE Q ss_conf 54155873239999997389988-89999999978976 Q gi|254780125|r 169 PSSDNDEYLTITQIGERLNPPQR-ARFLNKLLLKRGLQ 205 (262) Q Consensus 169 ~~~~~~~~l~~t~iak~l~~~~s-a~~~N~lL~~~g~q 205 (262) .+++..+.++..+||+.+|+..+ ...--+.|.+.|+. T Consensus 34 ~~Lq~d~r~s~~ela~~lgis~~tv~~ri~rL~~~gvI 71 (77) T 2e1c_A 34 KILQNDGKAPLREISKITGLAESTIHERIRKLRESGVI 71 (77) T ss_dssp HHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSS T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCC T ss_conf 99998389899999999881989999999998524550 No 132 >>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} (B:) Probab=20.92 E-value=45 Score=12.85 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=16.1 Q ss_pred HHHHHHHHCCCHHHHHHHHHH Q ss_conf 799999857996579999988 Q gi|254780125|r 73 DVYRLLVKSTLPSAQKFERWV 93 (262) Q Consensus 73 gly~Li~~s~~p~A~~F~~Wv 93 (262) .-.+++.+|++|..++|++=. T Consensus 17 d~~r~vk~c~KP~~kEf~kia 37 (68) T 2wwb_B 17 DSIRLVKRCTKPDRKEFQKIA 37 (68) T ss_dssp HHHHHHHHCCCCCTHHHHHHH T ss_pred HHHHHHHHHCCCCHHHHHHHH T ss_conf 989999992499989999999 Done!