HHSEARCH alignment of GI: 254780125 and SCOP domain: d1mkma1

Alignment
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=93.41  E-value=0.12  Score=27.73  Aligned_cols=59  Identities=22%  Similarity=0.192  Sum_probs=46.5

Q ss_pred             HHHHCCCCCCCHHHHHHHHCCCC-CHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
Q ss_conf             65415587323999999738998-889999999978976853799443657897543553
Q gi|254780125|r  168 LPSSDNDEYLTITQIGERLNPPQ-RARFLNKLLLKRGLQVSKVSGGYRPTPKGEERGGKM  226 (262)
Q Consensus       168 d~~~~~~~~l~~t~iak~l~~~~-sa~~~N~lL~~~g~q~Rk~~~~W~lt~kg~~~g~~~  226 (262)
                      +.+.++...+++++||+.+|++. +..++=.-|.+.|+..+...+.|.|..+...+|...
T Consensus        12 ~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l~~lg~~~   71 (75)
T d1mkma1          12 DFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFV   71 (75)
T ss_dssp             HHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHHHHH
T ss_pred             HHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCEEECHHHHHHHHHH
T ss_conf             999857999899999999791999999999999988998889999786329999999999


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]