Query         gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 216
No_of_seqs    117 out of 177
Neff          5.9 
Searched_HMMs 13730
Date          Sun May 22 19:53:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780126.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1je5a_ b.40.4.7 (A:) gp2.5 {B 100.0 1.7E-36 1.3E-40  241.8  16.2  163    4-179     7-187 (197)
  2 d1xbra_ b.2.5.4 (A:) T domain   37.3     6.6 0.00048   16.3   1.5   36    4-43     24-59  (184)
  3 d1h6fa_ b.2.5.4 (A:) T-box pro  25.8     5.9 0.00043   16.6  -0.3   36    4-43     24-59  (184)
  4 d2fyma2 d.54.1.1 (A:1-139) Eno  23.8      14 0.00098   14.4   1.2   52  119-181    10-63  (139)
  5 d1w6ta2 d.54.1.1 (A:1-137) Eno  19.4      19  0.0014   13.5   1.2   53  119-182    11-65  (137)
  6 d2qn6b1 d.58.51.1 (B:176-264)   15.4      27   0.002   12.5   5.0   29   28-58     48-77  (89)
  7 d1pdza2 d.54.1.1 (A:1-139) Eno  10.3      39  0.0028   11.6   1.4   53  119-183     9-63  (139)
  8 d2ge7a1 d.254.1.2 (A:8-114) Co  10.0      40  0.0029   11.5   3.1   22   29-51     72-93  (107)
  9 d2giba1 d.254.1.2 (A:270-366)    9.2      43  0.0031   11.3   3.0   17   28-44     61-77  (97)
 10 d1zvpa1 d.58.18.9 (A:2-67) Hyp   8.0      34  0.0025   12.0  -0.3   36    4-45     25-60  (66)

No 1  
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Probab=100.00  E-value=1.7e-36  Score=241.78  Aligned_cols=163  Identities=12%  Similarity=0.188  Sum_probs=125.8

Q ss_pred             EEEEEEE-ECCCCCCCCCCCCCCC--CCCCEEEEEEEECCCCHHH---HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             6776899-8331278641123678--8662479999963787899---99999999999875420002210013444434
Q gi|254780126|r    4 LTVKGRL-SYPALDTKVRMKLPDG--SSVEHYGCDIVFPKADTKQ---INAVEACLKTAVTEIFPNVSPDAFLSAVRSKS   77 (216)
Q Consensus         4 vt~kgr~-sYp~L~~P~~~~~~~g--~~~~kYs~~llipK~d~~~---~~~i~~AI~~a~~~~~~~k~~~~~~~~~k~~~   77 (216)
                      .|+.|++ +||||++||+.|...+  .++.+|||+|+||++|+++   +.+|+++++++.+.......     .......
T Consensus         7 ttp~G~a~~Y~~L~kPDt~f~~~~~~~~~g~Ykv~L~v~k~d~~a~~~i~~i~~~~e~a~~~~~~~~~-----~~~~k~~   81 (197)
T d1je5a_           7 TSALGTAEPYAYIAKPDYGNEERGFGNPRGVYKVDLTIPNKDPRCQRMVDEIVKCHEEAYAAAVEEYE-----ANPPAVA   81 (197)
T ss_dssp             ECCSEEECSSCEEEEEECCC---CCSCCSCEEEEEEEEETTSHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSCC---
T ss_pred             CCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCCCC
T ss_conf             27983234154337898554333467889618999997264177999999999999999999998753-----4565443


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC------------CCCCEEECCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf             4665210175455555454456542277389930377------------7788368578747347677401540799999
Q gi|254780126|r   78 ESRGVLRDGDAKIASSHKPENYTQTYTDSVYISAKNK------------YVQPLLVDRQAQPVSDPREVFYPGCWVIAKL  145 (216)
Q Consensus        78 ~~k~plrDGD~~~~~~~~~~~~~e~~~g~~~i~a~~k------------~~kP~ivD~~~~~i~d~~~~iySGs~~kv~~  145 (216)
                      ..+.|+++++.+.+       +.+++.|.|++++++|            .++|.|||++++||++. ..|||||++||++
T Consensus        82 ~~K~~~~p~~~~~~-------~~~~~~G~~~fk~K~Ka~~~~~kt~~~~~~~P~i~Ds~~~~l~~~-~~i~~Gs~~~v~~  153 (197)
T d1je5a_          82 RGKKPLKPYEGDMP-------FFDNGDGTTTFKFKCYASFQDKKTKETKHINLVVVDSKGKKMEDV-PIIGGGSKLKVKY  153 (197)
T ss_dssp             ----CCCCCBCCCS-------EEECSSSEEEEEEEEESEEECTTTCCEEECCCCEECTTSCBCSSC-CCCCTTCEEEEEE
T ss_pred             CCCCCCCCCCCCCC-------CCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCCCC-CCCCCCCEEEEEE
T ss_conf             11135687644577-------753668858999998765024567875544873798989998887-6123686899999


Q ss_pred             EEEEEECCCCCCEEEEEEECEEEEEECCCCCCCC
Q ss_conf             9998640788531169997407997248755566
Q gi|254780126|r  146 NIGAYELDPYKTKGFSCTLTGVQFFKHDERWGAS  179 (216)
Q Consensus       146 ~~~pY~~~~~~gkGVs~~L~~VQ~i~dgE~~GG~  179 (216)
                      .++||.++++.|+||+|+|++||+|+++|++||.
T Consensus       154 ~~~py~~~~~~g~Gvsl~L~~VQvi~~~e~~gg~  187 (197)
T d1je5a_         154 SLVPYKWNTAVGASVKLQLESVMLVELATFGGGE  187 (197)
T ss_dssp             EEEEECCCSSCCBEEEEEEEEEEEEECCC-----
T ss_pred             EEEEEEECCCCCEEEEEEEEEEEEEEECCCCCCC
T ss_conf             9855450798863899984469998812677877


No 2  
>d1xbra_ b.2.5.4 (A:) T domain from Brachyury transcription factor {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=37.33  E-value=6.6  Score=16.33  Aligned_cols=36  Identities=33%  Similarity=0.426  Sum_probs=24.8

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCH
Q ss_conf             6776899833127864112367886624799999637878
Q gi|254780126|r    4 LTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADT   43 (216)
Q Consensus         4 vt~kgr~sYp~L~~P~~~~~~~g~~~~kYs~~llipK~d~   43 (216)
                      ||..||-.||.|.  ++..+-+  -..+|.+.|-|..-|.
T Consensus        24 ITk~GRrmFP~l~--~~vsGLd--p~~~Y~v~l~~~~~D~   59 (184)
T d1xbra_          24 VTKNGRRMFPVLK--VSMSGLD--PNAMYTVLLDFVAADN   59 (184)
T ss_dssp             CBTTCEECSSCCE--EEEECSC--TTSEEEEEEEEEESSS
T ss_pred             EECCCCCCCCCEE--EEEECCC--CCCCEEEEEEEEECCC
T ss_conf             9158734587249--9997889--5744799999998557


No 3  
>d1h6fa_ b.2.5.4 (A:) T-box protein 3, tbx3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.80  E-value=5.9  Score=16.61  Aligned_cols=36  Identities=28%  Similarity=0.302  Sum_probs=24.4

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCH
Q ss_conf             6776899833127864112367886624799999637878
Q gi|254780126|r    4 LTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADT   43 (216)
Q Consensus         4 vt~kgr~sYp~L~~P~~~~~~~g~~~~kYs~~llipK~d~   43 (216)
                      ||..||-.||.|.  ++..+=+.  ..+|++.|-|..-|.
T Consensus        24 vTk~GRrmFP~l~--~~vsGLdp--~~~Y~v~l~~~~~D~   59 (184)
T d1h6fa_          24 ITKSGRRMFPPFK--VRCSGLDK--KAKYILLMDIIAADD   59 (184)
T ss_dssp             CCTTCBCCSSCCE--EEEESCCS--SSEEEEEEEEEEEEE
T ss_pred             EECCCCCCCCEEE--EEEECCCC--CCCEEEEEEEEECCC
T ss_conf             9269821076169--99934697--764689999998747


No 4  
>d2fyma2 d.54.1.1 (A:1-139) Enolase {Escherichia coli [TaxId: 562]}
Probab=23.83  E-value=14  Score=14.40  Aligned_cols=52  Identities=15%  Similarity=0.197  Sum_probs=35.6

Q ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEECEEEEEECCC--CCCCCCC
Q ss_conf             36857874734767740154079999999986407885311699974079972487--5556666
Q gi|254780126|r  119 LLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDE--RWGASPK  181 (216)
Q Consensus       119 ~ivD~~~~~i~d~~~~iySGs~~kv~~~~~pY~~~~~~gkGVs~~L~~VQ~i~dgE--~~GG~~~  181 (216)
                      +|+|+.|+|..+.+-....|+..|+++        +   -|.|.+..-..-++|++  +++|.+.
T Consensus        10 ~IlDSRG~PTvevev~~~~g~~g~a~~--------P---sGaStG~~Ea~elrD~~~~~~~Gkgv   63 (139)
T d2fyma2          10 EIIDSRGNPTVEAEVHLEGGFVGMAAA--------P---SGASTGSREALELRDGDKSRFLGKGV   63 (139)
T ss_dssp             EEECTTSCEEEEEEEEETTSCEEEEEC--------C---CCCSSCSSSCCCCCCCCTTSGGGTCC
T ss_pred             EEECCCCCEEEEEEEEECCCCEEEEEC--------C---CCCCCCCCCCCCCCCCCHHHHCCCCC
T ss_conf             998699985899999978998767877--------7---56676534220046777244316542


No 5  
>d1w6ta2 d.54.1.1 (A:1-137) Enolase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=19.38  E-value=19  Score=13.49  Aligned_cols=53  Identities=13%  Similarity=0.222  Sum_probs=34.6

Q ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEECEEEEEECCCC--CCCCCCC
Q ss_conf             368578747347677401540799999999864078853116999740799724875--5566665
Q gi|254780126|r  119 LLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDER--WGASPKS  182 (216)
Q Consensus       119 ~ivD~~~~~i~d~~~~iySGs~~kv~~~~~pY~~~~~~gkGVs~~L~~VQ~i~dgE~--~GG~~~~  182 (216)
                      +|+|+.|+|..+.+-...+|+..|+++        +   -|.|.+-.-.+-++|+++  +.|.+..
T Consensus        11 ~IlDSRG~PTvevev~~~~g~~gra~~--------P---SGAStG~~Ea~elrD~~~~~~~Gkgv~   65 (137)
T d1w6ta2          11 EVLDSRGNPTLEVEVYTESGAFGRGMV--------P---SGASTGEHEAVELRDGDKSRYGGLGTQ   65 (137)
T ss_dssp             EEECTTSCEEEEEEEEETTCCEEEEEC--------C---CC---CCSSCCCCCCCCTTSGGGTCCH
T ss_pred             EEECCCCCEEEEEEEEECCCCCCEEEC--------C---CCCCCCCCCCEECCCCCCCCCCCCCHH
T ss_conf             998699998999999988986413546--------7---677765440010367764020687578


No 6  
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.36  E-value=27  Score=12.51  Aligned_cols=29  Identities=17%  Similarity=0.346  Sum_probs=20.0

Q ss_pred             CCCEEEEEEEECCCCHHHH-HHHHHHHHHHHH
Q ss_conf             6624799999637878999-999999999987
Q gi|254780126|r   28 SVEHYGCDIVFPKADTKQI-NAVEACLKTAVT   58 (216)
Q Consensus        28 ~~~kYs~~llipK~d~~~~-~~i~~AI~~a~~   58 (216)
                      +.|+|.+++.-|  |.++. ..+++|++.+.+
T Consensus        48 gaP~Yri~v~a~--D~k~ae~~l~~a~~~i~~   77 (89)
T d2qn6b1          48 GAPRYRVDVVGT--NPKEASEALNQIISNLIK   77 (89)
T ss_dssp             STTEEEEEEEES--CHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEEEC--CHHHHHHHHHHHHHHHHH
T ss_conf             698089999807--899999999999999999


No 7  
>d1pdza2 d.54.1.1 (A:1-139) Enolase {European lobster (Homarus vulgaris) [TaxId: 6707]}
Probab=10.28  E-value=39  Score=11.56  Aligned_cols=53  Identities=11%  Similarity=0.263  Sum_probs=31.5

Q ss_pred             EEECCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCEEEEEEECEEEEEECCC--CCCCCCCCC
Q ss_conf             36857874734767740154079999999986407885311699974079972487--555666655
Q gi|254780126|r  119 LLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDE--RWGASPKSD  183 (216)
Q Consensus       119 ~ivD~~~~~i~d~~~~iySGs~~kv~~~~~pY~~~~~~gkGVs~~L~~VQ~i~dgE--~~GG~~~~~  183 (216)
                      +|+|+.|+|..+. +++..+...|+++        +   -|-|.+-.-..-++|++  ++.|.+...
T Consensus         9 ~IlDSRG~PTVev-~v~~~~~~~ra~~--------P---SGAStG~~EA~elrD~~~~~~~Gkgv~~   63 (139)
T d1pdza2           9 TIFDSRGNPTVEV-DLYTSKGLFRAAV--------P---SGASTGVHEALEMRDGDKSKYHGKSVFN   63 (139)
T ss_dssp             EEECTTSCEEEEE-EEEETTEEEEEEC--------C---CCBSSCSSSCBCCCCCCTTSGGGTCCHH
T ss_pred             EEECCCCCCEEEE-EEEECCCEEEEEC--------C---CCCCCCCHHHEECCCCCCCCCCCCCCCC
T ss_conf             9984899847999-9997997677764--------5---6768750331221468853101644321


No 8  
>d2ge7a1 d.254.1.2 (A:8-114) Coronavirus nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
Probab=9.98  E-value=40  Score=11.49  Aligned_cols=22  Identities=14%  Similarity=0.274  Sum_probs=14.2

Q ss_pred             CCEEEEEEEECCCCHHHHHHHHH
Q ss_conf             62479999963787899999999
Q gi|254780126|r   29 VEHYGCDIVFPKADTKQINAVEA   51 (216)
Q Consensus        29 ~~kYs~~llipK~d~~~~~~i~~   51 (216)
                      +-.|+-.+.+||+|+. ...+.+
T Consensus        72 ~lty~~~~~vpk~dP~-~~~~~k   93 (107)
T d2ge7a1          72 HLKFEFTTVVPRDDPQ-FDNYVK   93 (107)
T ss_dssp             EEEEEEEEEEETTSTT-HHHHHH
T ss_pred             EEEEEEEEEECCCCCC-HHHHHH
T ss_conf             9999888980798988-899999


No 9  
>d2giba1 d.254.1.2 (A:270-366) Coronavirus nucleocapsid protein {SARS coronavirus [TaxId: 227859]}
Probab=9.16  E-value=43  Score=11.30  Aligned_cols=17  Identities=18%  Similarity=0.196  Sum_probs=13.7

Q ss_pred             CCCEEEEEEEECCCCHH
Q ss_conf             66247999996378789
Q gi|254780126|r   28 SVEHYGCDIVFPKADTK   44 (216)
Q Consensus        28 ~~~kYs~~llipK~d~~   44 (216)
                      -+-.|+-.+.+||+|+.
T Consensus        61 ~~lty~~~~~vpk~dP~   77 (97)
T d2giba1          61 TWLTYHGAIKLDDKDPQ   77 (97)
T ss_dssp             EEEEEEEEEEECTTSTT
T ss_pred             EEEEEEEEEEECCCCCC
T ss_conf             69999888980798946


No 10 
>d1zvpa1 d.58.18.9 (A:2-67) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}
Probab=8.01  E-value=34  Score=11.96  Aligned_cols=36  Identities=19%  Similarity=0.089  Sum_probs=0.0

Q ss_pred             EEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCHHH
Q ss_conf             677689983312786411236788662479999963787899
Q gi|254780126|r    4 LTVKGRLSYPALDTKVRMKLPDGSSVEHYGCDIVFPKADTKQ   45 (216)
Q Consensus         4 vt~kgr~sYp~L~~P~~~~~~~g~~~~kYs~~llipK~d~~~   45 (216)
                      +|+..+..=|.-..|.-.|.+..+      ++|||+++++..
T Consensus        25 ~t~~~~~~~~~~l~pia~F~E~EG------lTlIl~~~~A~~   60 (66)
T d1zvpa1          25 CTVNGALSDYLSLEPIATFREPEG------LTLVLEAEKAQQ   60 (66)
T ss_dssp             EEECSCGGGGGGGCCSEEEEETTE------EEEEEEHHHHHH
T ss_pred             EEECCCCCCCCCCCEEEEEEECCC------EEEEEEHHHHHH
T ss_conf             998885456557862499995783------599989999988


Done!