RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780126|ref|YP_003064539.1| hypothetical protein
CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>1je5_A Helix-destabilizing protein; OB-fold, beta barrel, DNA binding
           protein; 1.90A {Enterobacteria phage T7} SCOP: b.40.4.7
          Length = 206

 Score = 65.0 bits (158), Expect = 1e-11
 Identities = 23/198 (11%), Positives = 52/198 (26%), Gaps = 34/198 (17%)

Query: 11  SYPAL---DTK---VRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEIFPNV 64
            Y  +   D          P G     Y  D+  P  D +    V+  +K          
Sbjct: 15  PYAYIAKPDYGNEERGFGNPRG----VYKVDLTIPNKDPRCQRMVDEIVKCH-------- 62

Query: 65  SPDAFLSAVRSKSESRGVLRDGDAKIASSHKPEN-YTQTYTDSVYISAKNKY-------- 115
             +   +A   + E+         K    ++ +  +      +     K           
Sbjct: 63  --EEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTK 120

Query: 116 ----VQPLLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFK 171
               +  ++VD + + + D   +   G  +  K ++  Y+ +          L  V   +
Sbjct: 121 ETKHINLVVVDSKGKKMEDVPII-GGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLVE 179

Query: 172 HDERWGASPKSDTSEFKD 189
                G          ++
Sbjct: 180 LATFGGGEDDWADEVEEN 197


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 43.8 bits (103), Expect = 3e-05
 Identities = 44/220 (20%), Positives = 65/220 (29%), Gaps = 88/220 (40%)

Query: 39  PKADTKQI--NAVEACLKTAVTEIFPNVSPDAFLSAVRSKSESRGVLRDGDAKIASSHKP 96
               TK++  N + A         F   S  A   AV           +G+A++      
Sbjct: 115 TLVKTKELIKNYITAR--IMAKRPFDKKSNSALFRAV----------GEGNAQL------ 156

Query: 97  ENY--------TQTYTD---SVYISAKNKYVQPLLVD--RQAQPV-----SDPREV--FY 136
                      T  Y +    +Y      Y   L+ D  + +            +    +
Sbjct: 157 --VAIFGGQGNTDDYFEELRDLY----QTY-HVLVGDLIKFSAETLSELIRTTLDAEKVF 209

Query: 137 P-GCWVIAKLNIGAYELDPYKT--KGF------SCTLTG-VQF------FKHDERWGASP 180
             G      LNI  +  +P  T  K +      SC L G +Q        K     G +P
Sbjct: 210 TQG------LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKL---LGFTP 260

Query: 181 KSDTSEFKDY-----GEEQDSDTSVSNFASAEVDSDALPW 215
                E + Y     G  Q   T+V   A AE DS    W
Sbjct: 261 G----ELRSYLKGATGHSQGLVTAV---AIAETDS----W 289


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.21
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 4/26 (15%)

Query: 1  MQKLTVKGRL----SYPALDTKVRMK 22
          ++KL    +L    S PAL  K  M+
Sbjct: 22 LKKLQASLKLYADDSAPALAIKATME 47


>2ood_A BLR3880 protein; PSI-II, PSI-2, guanine deaminase, guanine,
           structural genomics, protein structure initiative; HET:
           GUN; 2.62A {Bradyrhizobium japonicum usda 110} SCOP:
           b.92.1.4 c.1.9.9
          Length = 475

 Score = 27.6 bits (59), Expect = 2.3
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 67  DAFLSAVRSKSESRGVLRDG-----DAKIASSHKPENYTQTYTDSVYISAKNKYVQPLLV 121
           D +      ++ +R   +DG     D  I +    E     +        K++ + P  +
Sbjct: 18  DPWKHIGNEQAAAR-FHQDGLMVVTDGVIKAFGPYEKIAAAHPGVEITHIKDRIIVPGFI 76

Query: 122 D 122
           D
Sbjct: 77  D 77


>2avx_A Regulatory protein SDIA; homoserine lactone, quorum sensing,
           transcription; HET: HTF; NMR {Escherichia coli}
          Length = 171

 Score = 26.2 bits (57), Expect = 6.2
 Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 11/78 (14%)

Query: 119 LLVDRQAQPVSDPREVF---YPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFKHDER 175
            L  R   P + P+  F   YP  WV          +DP                     
Sbjct: 43  SLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHL--------M 94

Query: 176 WGASPKSDTSEFKDYGEE 193
           W     S+     +    
Sbjct: 95  WNDDLFSEAQPLWEAARA 112


>1h8c_A FAF1, FAS-associated factor 1; apoptosis, FAF1 UBX domain
          ubiquitin-like; NMR {Homo sapiens} SCOP: d.15.1.2
          Length = 82

 Score = 25.7 bits (56), Expect = 7.7
 Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 5/30 (16%)

Query: 17 TKVRMKLPDGSSVEHYGCDIVFPKADTKQI 46
          +K+R++ P G  +E       F  ++  QI
Sbjct: 6  SKLRIRTPSGEFLER-----RFLASNKLQI 30


>1uf2_K Structural protein P7; virus components, icosahedral virus; 3.50A
           {Rice dwarf virus}
          Length = 506

 Score = 25.7 bits (56), Expect = 8.1
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 47  NAVEACLKTAVTEIFPNVSPDAFLSAVRSKSESRG-----VLRDGDAKIA-SSHKPENYT 100
            AV ACL T + E+F   S      A+  + ++ G     VL  G      SS  P  + 
Sbjct: 227 PAVAACLNTPIKELFSMGSGKREPLALEFRKDNEGQCIGIVLPKGHEGDTLSSRYPAVFI 286

Query: 101 QTYTDSVYISAKNKYVQPLLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYE 151
                  +   +   +  L         SD  E  Y    +   ++ G+Y 
Sbjct: 287 N--ESEPFSDKERSELSELKRTD-----SDAYEKLYSET-ISKHVSDGSYG 329


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.314    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,719,699
Number of extensions: 70240
Number of successful extensions: 124
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 8
Length of query: 216
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 127
Effective length of database: 3,535,514
Effective search space: 449010278
Effective search space used: 449010278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.7 bits)