RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780126|ref|YP_003064539.1| hypothetical protein CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62] (216 letters) >d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]} Length = 197 Score = 49.3 bits (117), Expect = 2e-07 Identities = 23/198 (11%), Positives = 50/198 (25%), Gaps = 34/198 (17%) Query: 11 SYPAL---DTK---VRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEIFPNV 64 Y + D P G Y D+ P D + V+ +K Sbjct: 15 PYAYIAKPDYGNEERGFGNPRG----VYKVDLTIPNKDPRCQRMVDEIVKCH-------- 62 Query: 65 SPDAFLSAVRSKSESRGVLR-DGDAKIASSHKPENYTQTYTDSVYISAKNKY-------- 115 + +A + E+ G + + + K Sbjct: 63 --EEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTK 120 Query: 116 ----VQPLLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFK 171 + ++VD + + + D + G + K ++ Y+ + L V + Sbjct: 121 ETKHINLVVVDSKGKKMEDVPII-GGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLVE 179 Query: 172 HDERWGASPKSDTSEFKD 189 G ++ Sbjct: 180 LATFGGGEDDWADEVEEN 197 >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Score = 25.2 bits (55), Expect = 4.5 Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 5/27 (18%) Query: 17 TKVRMKLPDGSSVEHYGCDIVFPKADT 43 +K+R++ P G +E F ++ Sbjct: 6 SKLRIRTPSGEFLERR-----FLASNK 27 >d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus thermophilus [TaxId: 274]} Length = 347 Score = 24.9 bits (53), Expect = 6.2 Identities = 6/13 (46%), Positives = 9/13 (69%) Query: 1 MQKLTVKGRLSYP 13 MQ+L V+ + YP Sbjct: 1 MQRLEVREPVPYP 13 >d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK {Escherichia coli [TaxId: 562]} Length = 347 Score = 24.5 bits (53), Expect = 6.8 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%) Query: 50 EACLKTAVT-EIFPNVSPDAFLSAVRSKSESRGVL 83 + L A EIF + +PD GVL Sbjct: 57 QGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVL 91 >d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 210 Score = 24.4 bits (52), Expect = 7.4 Identities = 6/40 (15%), Positives = 10/40 (25%) Query: 35 DIVFPKADTKQINAVEACLKTAVTEIFPNVSPDAFLSAVR 74 +I+F K QI + D + Sbjct: 146 EILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKRED 185 >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Score = 24.2 bits (52), Expect = 9.5 Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 5/27 (18%) Query: 17 TKVRMKLPDGSSVEHYGCDIVFPKADT 43 ++ ++ PDG + P+ Sbjct: 44 AQLMLRYPDGKREQIT-----LPEQAK 65 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.130 0.386 Gapped Lambda K H 0.267 0.0582 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 748,793 Number of extensions: 31514 Number of successful extensions: 27 Number of sequences better than 10.0: 1 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 7 Length of query: 216 Length of database: 2,407,596 Length adjustment: 82 Effective length of query: 134 Effective length of database: 1,281,736 Effective search space: 171752624 Effective search space used: 171752624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 51 (23.7 bits)