RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780126|ref|YP_003064539.1| hypothetical protein
CLIBASIA_00025 [Candidatus Liberibacter asiaticus str. psy62]
         (216 letters)



>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
          Length = 197

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 23/198 (11%), Positives = 50/198 (25%), Gaps = 34/198 (17%)

Query: 11  SYPAL---DTK---VRMKLPDGSSVEHYGCDIVFPKADTKQINAVEACLKTAVTEIFPNV 64
            Y  +   D          P G     Y  D+  P  D +    V+  +K          
Sbjct: 15  PYAYIAKPDYGNEERGFGNPRG----VYKVDLTIPNKDPRCQRMVDEIVKCH-------- 62

Query: 65  SPDAFLSAVRSKSESRGVLR-DGDAKIASSHKPENYTQTYTDSVYISAKNKY-------- 115
             +   +A   + E+       G   +        +      +     K           
Sbjct: 63  --EEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTK 120

Query: 116 ----VQPLLVDRQAQPVSDPREVFYPGCWVIAKLNIGAYELDPYKTKGFSCTLTGVQFFK 171
               +  ++VD + + + D   +   G  +  K ++  Y+ +          L  V   +
Sbjct: 121 ETKHINLVVVDSKGKKMEDVPII-GGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLVE 179

Query: 172 HDERWGASPKSDTSEFKD 189
                G          ++
Sbjct: 180 LATFGGGEDDWADEVEEN 197


>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 82

 Score = 25.2 bits (55), Expect = 4.5
 Identities = 6/27 (22%), Positives = 13/27 (48%), Gaps = 5/27 (18%)

Query: 17 TKVRMKLPDGSSVEHYGCDIVFPKADT 43
          +K+R++ P G  +E       F  ++ 
Sbjct: 6  SKLRIRTPSGEFLERR-----FLASNK 27


>d1ujna_ e.22.1.1 (A:) Dehydroquinate synthase, DHQS {Thermus
          thermophilus [TaxId: 274]}
          Length = 347

 Score = 24.9 bits (53), Expect = 6.2
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 1  MQKLTVKGRLSYP 13
          MQ+L V+  + YP
Sbjct: 1  MQRLEVREPVPYP 13


>d1oi2a_ c.119.1.2 (A:) Dihydroxyacetone kinase subunit K, DhaK
          {Escherichia coli [TaxId: 562]}
          Length = 347

 Score = 24.5 bits (53), Expect = 6.8
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 50 EACLKTAVT-EIFPNVSPDAFLSAVRSKSESRGVL 83
          +  L  A   EIF + +PD             GVL
Sbjct: 57 QGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVL 91


>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS)
           {Pyrococcus abyssi [TaxId: 29292]}
          Length = 210

 Score = 24.4 bits (52), Expect = 7.4
 Identities = 6/40 (15%), Positives = 10/40 (25%)

Query: 35  DIVFPKADTKQINAVEACLKTAVTEIFPNVSPDAFLSAVR 74
           +I+F K    QI                 +  D +     
Sbjct: 146 EILFKKVTDDQIIYFILNYMAKGNPEGARILLDKYYKRED 185


>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 124

 Score = 24.2 bits (52), Expect = 9.5
 Identities = 4/27 (14%), Positives = 10/27 (37%), Gaps = 5/27 (18%)

Query: 17 TKVRMKLPDGSSVEHYGCDIVFPKADT 43
           ++ ++ PDG   +        P+   
Sbjct: 44 AQLMLRYPDGKREQIT-----LPEQAK 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 748,793
Number of extensions: 31514
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 7
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)