HHsearch alignment for GI: 254780127 and conserved domain: COG0349
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis].
Probab=99.62 E-value=2.7e-14 Score=112.75 Aligned_cols=160 Identities=18% Similarity=0.140 Sum_probs=115.5
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHHHHH
Q ss_conf 78999804067887000460000268829999999838228999788842217999998648898199863077599999
Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 (675)
Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~~~~d~~~~~~~~~~l~~~L~~~~~~kv~HNa~FD~~vL~ 81 (675)
T Consensus 18 ~~iAIDTEf~--------r~~t~--~p~LcLIQi~~~e~-~~lIdp~~~~~d~~~l~~Ll~d~~v~KIfHaa~~DL~~l~ 86 (361)
T COG0349 18 KAIAIDTEFM--------RLRTY--YPRLCLIQISDGEG-ASLIDPLAGILDLPPLVALLADPNVVKIFHAARFDLEVLL 86 (361)
T ss_pred CEEEEECCCC--------CCCCC--CCCEEEEEEECCCC-CEEECCCCCCCCCCHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 8079832224--------66436--88337999844888-6686226554666369998628760255025635199999
Q ss_pred HHCCCCCCCCCEEEHHHHHHHHCCC--CCHHHHHH-HHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 8629987865045458899985889--99789999-80889865276637657664100233201345311258768999
Q gi|254780127|r 82 KTLGIDIPSKRWICTSVLARTNGLP--SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 (675)
Q Consensus 82 ~~lGi~i~~~~~~DTmi~A~~l~~p--~sL~~la~-~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (675)
T Consensus 87 ~~~g~~p--~plfdTqiAa~l~g~~~~~gl~~Lv~~ll~v~ldK~~---------------q~SDW~~R-----P-Ls~~ 143 (361)
T COG0349 87 NLFGLLP--TPLFDTQIAAKLAGFGTSHGLADLVEELLGVELDKSE---------------QRSDWLAR-----P-LSEA 143 (361)
T ss_pred HHCCCCC--CCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCC---------------CCCCCCCC-----C-CCHH
T ss_conf 8618887--7346899999980986323299999999688536444---------------54655557-----9-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 8988775399999999872002143101789999875
Q gi|254780127|r 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 (675)
Q Consensus 159 ~~~Ya~~Dv~~~~~L~~~L~~~~~~E~~l~~~~~~me 195 (675)
T Consensus 144 Ql~YAa~DV~yL~~l~~~L~~~L~~~~r~~~a~~ef~ 180 (361)
T COG0349 144 QLEYAAADVEYLLPLYDKLTEELAREGRLEWAEDEFR 180 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999999999999999999987485499999999