HHsearch alignment for GI: 254780127 and conserved domain: PRK05762
>PRK05762 DNA polymerase II; Reviewed.
Probab=98.51 E-value=4.6e-06 Score=58.26 Aligned_cols=156 Identities=16% Similarity=0.205 Sum_probs=78.7
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCC-EEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHC--CCCCEEEEEEH-HHH
Q ss_conf 9789998040678870004600002688-2999999983822899978884221799999864--88981998630-775
Q gi|254780127|r 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA-VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR--DETVMCVAHNS-LFE 76 (675)
Q Consensus 1 mk~l~lD~ET~s~~dl~~~Gl~~y~~~~-~I~~i~~a~~~~~~~~~d~~~~~~~~~~l~~~L~--~~~~~kv~HNa-~FD 76 (675)
T Consensus 155 lrvlSfDIEc~~~g~ii~I~l~~--~~~~~v~~~g~~~~~~~v~~--~~~E~eLL~~F~~~i~~~DPDII-~GyNi~~FD 229 (785)
T PRK05762 155 LKVVSLDIETSNKGELYSIGLEG--CGQRQVYMLGEANGDAELEY--VADEKALLERFNAWFAEFDPDVI-IGWNVVQFD 229 (785)
T ss_pred CEEEEEEEEECCCCCEEEEEECC--CCCCEEEEECCCCCCCEEEE--ECCHHHHHHHHHHHHHHHCCCEE-EECCCCCCC
T ss_conf 86999998977999889999517--99846899668899853899--09999999999999998599989-962747877
Q ss_pred HHHHHH---HCCCCCC-------------------------CCCEEEHHHHHHH--HC-CCCCHHHHHHHH-CCCCCCH-
Q ss_conf 999998---6299878-------------------------6504545889998--58-899978999980-8898652-
Q gi|254780127|r 77 RILFKK---TLGIDIP-------------------------SKRWICTSVLART--NG-LPSSLKNACLAL-NFSEHLT- 123 (675)
Q Consensus 77 ~~vL~~---~lGi~i~-------------------------~~~~~DTmi~A~~--l~-~p~sL~~la~~l-gl~~~~~- 123 (675)
T Consensus 230 lpyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~~~l~sYsL~~Va~~~Lge~K~~~~ 309 (785)
T PRK05762 230 LRLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAFYEFKSFSLENVAQELLGEGKAIDN 309 (785)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 79999999994998546878886533315655660599984289997099998752036766299999998544555566
Q ss_pred HHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 7663765766410023320134531125876899989887753999999998720
Q gi|254780127|r 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 (675)
Q Consensus 124 kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~ 178 (675)
T Consensus 310 ~~~r~~eI~~~--------------~~---~~r~~l~~Y~l~Da~L~~~L~~kl~ 347 (785)
T PRK05762 310 PYDRMDEIDRY--------------FA---DDKPALAKYNLKDCELVTRIFEKTE 347 (785)
T ss_pred HHHHHHHHHHH--------------HH---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 66668888998--------------85---4689999999999999999999870