HHsearch alignment for GI: 254780127 and conserved domain: PRK05762

>PRK05762 DNA polymerase II; Reviewed.
Probab=98.51  E-value=4.6e-06  Score=58.26  Aligned_cols=156  Identities=16%  Similarity=0.205  Sum_probs=78.7

Q ss_pred             CCEEEEEECCCCCCCCCCCCCHHHCCCC-EEEEEEEEECCCEEEEEECCCCCHHHHHHHHHHC--CCCCEEEEEEH-HHH
Q ss_conf             9789998040678870004600002688-2999999983822899978884221799999864--88981998630-775
Q gi|254780127|r    1 MSKLFIDIETRSPQPLPKVGVWAYAEQA-VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR--DETVMCVAHNS-LFE   76 (675)
Q Consensus         1 mk~l~lD~ET~s~~dl~~~Gl~~y~~~~-~I~~i~~a~~~~~~~~~d~~~~~~~~~~l~~~L~--~~~~~kv~HNa-~FD   76 (675)
T Consensus       155 lrvlSfDIEc~~~g~ii~I~l~~--~~~~~v~~~g~~~~~~~v~~--~~~E~eLL~~F~~~i~~~DPDII-~GyNi~~FD  229 (785)
T PRK05762        155 LKVVSLDIETSNKGELYSIGLEG--CGQRQVYMLGEANGDAELEY--VADEKALLERFNAWFAEFDPDVI-IGWNVVQFD  229 (785)
T ss_pred             CEEEEEEEEECCCCCEEEEEECC--CCCCEEEEECCCCCCCEEEE--ECCHHHHHHHHHHHHHHHCCCEE-EECCCCCCC
T ss_conf             86999998977999889999517--99846899668899853899--09999999999999998599989-962747877


Q ss_pred             HHHHHH---HCCCCCC-------------------------CCCEEEHHHHHHH--HC-CCCCHHHHHHHH-CCCCCCH-
Q ss_conf             999998---6299878-------------------------6504545889998--58-899978999980-8898652-
Q gi|254780127|r   77 RILFKK---TLGIDIP-------------------------SKRWICTSVLART--NG-LPSSLKNACLAL-NFSEHLT-  123 (675)
Q Consensus        77 ~~vL~~---~lGi~i~-------------------------~~~~~DTmi~A~~--l~-~p~sL~~la~~l-gl~~~~~-  123 (675)
T Consensus       230 lpyL~~Ra~~~gi~l~lgR~~~~~~~~~~~~~~~~~~~~i~GRv~iD~~~~~k~~~~~l~sYsL~~Va~~~Lge~K~~~~  309 (785)
T PRK05762        230 LRLLQERAERYGIPLRLGRGGSELSWRVHGHKRGHFFASVPGRLVLDGIDALKSAFYEFKSFSLENVAQELLGEGKAIDN  309 (785)
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEEEEEEEEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf             79999999994998546878886533315655660599984289997099998752036766299999998544555566


Q ss_pred             HHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             7663765766410023320134531125876899989887753999999998720
Q gi|254780127|r  124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI  178 (675)
Q Consensus       124 kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~  178 (675)
T Consensus       310 ~~~r~~eI~~~--------------~~---~~r~~l~~Y~l~Da~L~~~L~~kl~  347 (785)
T PRK05762        310 PYDRMDEIDRY--------------FA---DDKPALAKYNLKDCELVTRIFEKTE  347 (785)
T ss_pred             HHHHHHHHHHH--------------HH---CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             66668888998--------------85---4689999999999999999999870