HHsearch alignment for GI: 254780127 and conserved domain: PRK06063
>PRK06063 DNA polymerase III subunit epsilon; Provisional.
Probab=98.90 E-value=4e-08 Score=71.95 Aligned_cols=66 Identities=26% Similarity=0.386 Sum_probs=50.6
Q ss_pred HHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHCC---CCCHHHHHHHHCCCCC
Q ss_conf 799999864889819986307759999986---2998786504545889998588---9997899998088986
Q gi|254780127|r 54 PSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTNGL---PSSLKNACLALNFSEH 121 (675)
Q Consensus 54 ~~~l~~~L~~~~~~kv~HNa~FD~~vL~~~---lGi~i~~~~~~DTmi~A~~l~~---p~sL~~la~~lgl~~~ 121 (675)
T Consensus 85 ~~~l~~~l~--g~vlVAHNa~FD~~FL~~e~~r~g~~~p~~~~lcTl~lARr~~~~l~~~kL~tla~~~Gi~~~ 156 (313)
T PRK06063 85 AGELAEVLR--GRTLVAHNVAFDYSFLAAEAELAGAELPVDQVMCTVELARRLDLGLPNLRLETLAAHWGVVQQ 156 (313)
T ss_pred HHHHHHHHC--CCEEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf 999999978--997999685652999999999739988999667689988654489999747889998099988