HHsearch alignment for GI: 254780127 and conserved domain: PRK06309
>PRK06309 DNA polymerase III subunit epsilon; Validated.
Probab=99.01 E-value=1.8e-08 Score=74.29 Aligned_cols=85 Identities=20% Similarity=0.201 Sum_probs=60.3
Q ss_pred HHHHHCCCCCEEEEEEH-HHHHHHHHHH---CCCCCCCCCEEEHHHHHHHHC---CCCCHHHHHHHHCCCCCCHHHHHCH
Q ss_conf 99986488981998630-7759999986---299878650454588999858---8999789999808898652766376
Q gi|254780127|r 57 LLQYLRDETVMCVAHNS-LFERILFKKT---LGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEHLTKMEEGK 129 (675)
Q Consensus 57 l~~~L~~~~~~kv~HNa-~FD~~vL~~~---lGi~i~~~~~~DTmi~A~~l~---~p~sL~~la~~lgl~~~~~kd~~gk 129 (675)
T Consensus 73 ~~~f~~-~~~ilVaHN~~~FD~~fL~~e~~r~g~~~~~~~~iDTl~lar~l~P~l~~h~L~~L~~~~gi~~~~------- 144 (232)
T PRK06309 73 FREFCG-TDNILVAHNNDGFDFPLLVKECRRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQVYGFAENQ------- 144 (232)
T ss_pred HHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCC-------
T ss_conf 999857-998899848965679999999998599867740537999999975897768899999980999988-------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57664100233201345311258768999898877539999999987200
Q gi|254780127|r 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 (675)
Q Consensus 130 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~ 179 (675)
T Consensus 145 ------------------------------aHrAl~Da~at~~vf~~ll~ 164 (232)
T PRK06309 145 ------------------------------AHRALDDVITLHRVFSALVG 164 (232)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHHHH
T ss_conf ------------------------------88859999999999999872