HHsearch alignment for GI: 254780127 and conserved domain: PRK07246

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.
Probab=99.06  E-value=7.5e-09  Score=76.73  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=70.0

Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEE-EECCCEEE-EEE--CCCCCHHHHH---------------------
Q ss_conf             7899980406788700046000026882999999-98382289-997--8884221799---------------------
Q gi|254780127|r    2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVK-LWD--RTEQSAMPSD---------------------   56 (675)
Q Consensus         2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~-a~~~~~~~-~~d--~~~~~~~~~~---------------------   56 (675)
T Consensus         8 ~~~vvDlETTG--------~~~--~~-~Iiqi~~v~~~~~~i~~~f~t~vnP~~~ip~~I~~LTgI~~~~v~~ap~f~~v   76 (820)
T PRK07246          8 KYAVVDLEATG--------AGP--NA-SIIQVGIVIIQGNKIIDSYETDVNPHESLDEHIVHLTGITDKQLAQAPDFSQV   76 (820)
T ss_pred             CEEEEEEECCC--------CCC--CC-CEEEEEEEEEECCEEEEEEEECCCCCCCCCHHHHHHCCCCHHHHHCCCCHHHH
T ss_conf             18999988789--------899--98-77999999999999989987311889979978886469898998529998999


Q ss_pred             ---HHHHHCCCCCEEEEEEHHHHHHHHHHHC---CCCCCCCCEEEHHHHHHHHC---CCCCHHHHHHHHCCCCC
Q ss_conf             ---9998648898199863077599999862---99878650454588999858---89997899998088986
Q gi|254780127|r   57 ---LLQYLRDETVMCVAHNSLFERILFKKTL---GIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFSEH  121 (675)
Q Consensus        57 ---l~~~L~~~~~~kv~HNa~FD~~vL~~~l---Gi~i~~~~~~DTmi~A~~l~---~p~sL~~la~~lgl~~~  121 (675)
T Consensus        77 ~~~~~~~l--~~~~~VaHNv~FD~~fl~~~~~~~g~~~~-~~~~DTv~La~i~~P~~~~y~L~~L~~~l~~~~~  147 (820)
T PRK07246         77 AHHIYQLI--EDCIFVAHNVKFDANLLAEALFLEGYELR-TPRVDTVELAQVFFPRLEKYSLSHLSRQLNIDLA  147 (820)
T ss_pred             HHHHHHHH--CCCEEEEECCCCCHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCCCC
T ss_conf             99999996--79859983720169999999997589889-9826099999997798788888999997399999