HHsearch alignment for GI: 254780127 and conserved domain: PRK09145

>PRK09145 DNA polymerase III subunit epsilon; Validated.
Probab=98.90  E-value=1.5e-07  Score=68.12  Aligned_cols=128  Identities=18%  Similarity=0.125  Sum_probs=74.1

Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEE-EECCCEEE-----EEECCC---------------------CCHHH
Q ss_conf             7899980406788700046000026882999999-98382289-----997888---------------------42217
Q gi|254780127|r    2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVK-----LWDRTE---------------------QSAMP   54 (675)
Q Consensus         2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~-a~~~~~~~-----~~d~~~---------------------~~~~~   54 (675)
T Consensus        30 ~fVv~D~ETT--------GL~~~~--D~IieIgav~v~~~~i~~~~~f~~lV~P~~~i~~~~~~IhGIt~~~l~~ap~~~   99 (203)
T PRK09145         30 EWVALDCETT--------GLDPRR--AEIVSIAAVKIRGNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEHGLSEE   99 (203)
T ss_pred             CEEEEEEECC--------CCCCCC--CEEEEEEEEEEECCEEECCCEEEEEECCCCCCCHHHHCCCCCCHHHHCCCCCHH
T ss_conf             8999985689--------999999--706999999999999931752899989799598645201387879981399999


Q ss_pred             ---HHHHHHHCCCCCEEEEEEHHHHHHHHHH----HCCCCCCCCCEEEHHHHH--HH---H-C--CCCCHHHHHHHHCCC
Q ss_conf             ---9999986488981998630775999998----629987865045458899--98---5-8--899978999980889
Q gi|254780127|r   55 ---SDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLA--RT---N-G--LPSSLKNACLALNFS  119 (675)
Q Consensus        55 ---~~l~~~L~~~~~~kv~HNa~FD~~vL~~----~lGi~i~~~~~~DTmi~A--~~---l-~--~p~sL~~la~~lgl~  119 (675)
T Consensus       100 evl~~f~~fi~--~~~lVgHNa~FD~~fL~~~~~r~~g~~l~-~~~id~~~l~~~~~~~~~~~~~~~~~L~~l~~~~gi~  176 (203)
T PRK09145        100 EALRQLLAFIG--NRPLVGYYLEFDVAMLNRYVRPLLGIGLP-NPLIEVSSLYHDKKERHLPDAYIDLRFDAILKHLDLP  176 (203)
T ss_pred             HHHHHHHHHCC--CCEEEEECHHHHHHHHHHHHHHHCCCCCC-CCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf             99999998829--99899987899999999999996299999-9877609879999996676987788999999857987


Q ss_pred             CCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             865276637657664100233201345311258768999898877539999999987200
Q gi|254780127|r  120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP  179 (675)
Q Consensus       120 ~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~  179 (675)
T Consensus       177 ~~~-------------------------------------~HrAL~DA~aTa~lfl~L~k  199 (203)
T PRK09145        177 VLG-------------------------------------RHDALNDAIMTALIYLRLRK  199 (203)
T ss_pred             CCC-------------------------------------CCCHHHHHHHHHHHHHHHHC
T ss_conf             899-------------------------------------97989999999999999867