HHsearch alignment for GI: 254780127 and conserved domain: PRK09145
>PRK09145 DNA polymerase III subunit epsilon; Validated.
Probab=98.90 E-value=1.5e-07 Score=68.12 Aligned_cols=128 Identities=18% Similarity=0.125 Sum_probs=74.1
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEE-EECCCEEE-----EEECCC---------------------CCHHH
Q ss_conf 7899980406788700046000026882999999-98382289-----997888---------------------42217
Q gi|254780127|r 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-AWDDEPVK-----LWDRTE---------------------QSAMP 54 (675)
Q Consensus 2 k~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~-a~~~~~~~-----~~d~~~---------------------~~~~~ 54 (675)
T Consensus 30 ~fVv~D~ETT--------GL~~~~--D~IieIgav~v~~~~i~~~~~f~~lV~P~~~i~~~~~~IhGIt~~~l~~ap~~~ 99 (203)
T PRK09145 30 EWVALDCETT--------GLDPRR--AEIVSIAAVKIRGNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEHGLSEE 99 (203)
T ss_pred CEEEEEEECC--------CCCCCC--CEEEEEEEEEEECCEEECCCEEEEEECCCCCCCHHHHCCCCCCHHHHCCCCCHH
T ss_conf 8999985689--------999999--706999999999999931752899989799598645201387879981399999
Q ss_pred ---HHHHHHHCCCCCEEEEEEHHHHHHHHHH----HCCCCCCCCCEEEHHHHH--HH---H-C--CCCCHHHHHHHHCCC
Q ss_conf ---9999986488981998630775999998----629987865045458899--98---5-8--899978999980889
Q gi|254780127|r 55 ---SDLLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLA--RT---N-G--LPSSLKNACLALNFS 119 (675)
Q Consensus 55 ---~~l~~~L~~~~~~kv~HNa~FD~~vL~~----~lGi~i~~~~~~DTmi~A--~~---l-~--~p~sL~~la~~lgl~ 119 (675)
T Consensus 100 evl~~f~~fi~--~~~lVgHNa~FD~~fL~~~~~r~~g~~l~-~~~id~~~l~~~~~~~~~~~~~~~~~L~~l~~~~gi~ 176 (203)
T PRK09145 100 EALRQLLAFIG--NRPLVGYYLEFDVAMLNRYVRPLLGIGLP-NPLIEVSSLYHDKKERHLPDAYIDLRFDAILKHLDLP 176 (203)
T ss_pred HHHHHHHHHCC--CCEEEEECHHHHHHHHHHHHHHHCCCCCC-CCEEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
T ss_conf 99999998829--99899987899999999999996299999-9877609879999996676987788999999857987
Q ss_pred CCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 865276637657664100233201345311258768999898877539999999987200
Q gi|254780127|r 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 (675)
Q Consensus 120 ~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~ 179 (675)
T Consensus 177 ~~~-------------------------------------~HrAL~DA~aTa~lfl~L~k 199 (203)
T PRK09145 177 VLG-------------------------------------RHDALNDAIMTALIYLRLRK 199 (203)
T ss_pred CCC-------------------------------------CCCHHHHHHHHHHHHHHHHC
T ss_conf 899-------------------------------------97989999999999999867