HHsearch alignment for GI: 254780127 and conserved domain: TIGR00573
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=97.27 E-value=0.0021 Score=40.65 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=57.9
Q ss_pred HHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCC--CCCCEEEHHHHHHHH--CCC---CCHHHHHHHHCCCCC
Q ss_conf 21799999864889819986307759999986---29987--865045458899985--889---997899998088986
Q gi|254780127|r 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDI--PSKRWICTSVLARTN--GLP---SSLKNACLALNFSEH 121 (675)
Q Consensus 52 ~~~~~l~~~L~~~~~~kv~HNa~FD~~vL~~~---lGi~i--~~~~~~DTmi~A~~l--~~p---~sL~~la~~lgl~~~ 121 (675)
T Consensus 77 eia~dF~~~I~--g~~Lv~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~~~~~~s 154 (228)
T TIGR00573 77 EIAEDFADYIK--GAVLVIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALRYEITNS 154 (228)
T ss_pred HHHHHHHHHHC--CCEEEEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHH
T ss_conf 78899999837--9478752003057789999985145011001144449999999972058843027777878054403
Q ss_pred CHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 527663765766410023320134531125876899989887753999999998720
Q gi|254780127|r 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 (675)
Q Consensus 122 ~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~ 178 (675)
T Consensus 155 ~R-----------------------------------~~H~A~~DA~~l~~~~~~~~ 176 (228)
T TIGR00573 155 HR-----------------------------------ALHGALLDAFILAKLYLVMT 176 (228)
T ss_pred HH-----------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 77-----------------------------------77317788999999999998