HHsearch alignment for GI: 254780127 and conserved domain: TIGR00573

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family; InterPro: IPR006054 All proteins in this entry for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the N-terminal region of DinG from some low GC Gram-positive bacteria. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication.
Probab=97.27  E-value=0.0021  Score=40.65  Aligned_cols=90  Identities=17%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCC--CCCCEEEHHHHHHHH--CCC---CCHHHHHHHHCCCCC
Q ss_conf             21799999864889819986307759999986---29987--865045458899985--889---997899998088986
Q gi|254780127|r   52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDI--PSKRWICTSVLARTN--GLP---SSLKNACLALNFSEH  121 (675)
Q Consensus        52 ~~~~~l~~~L~~~~~~kv~HNa~FD~~vL~~~---lGi~i--~~~~~~DTmi~A~~l--~~p---~sL~~la~~lgl~~~  121 (675)
T Consensus        77 eia~dF~~~I~--g~~Lv~HNA~FD~GFl~~e~~~LG~~~~~~~~~v~~~~~~~~~~~~~~p~~~~~Ld~L~~~~~~~~s  154 (228)
T TIGR00573        77 EIAEDFADYIK--GAVLVIHNASFDVGFLNYEFSKLGLKKEPKTNDVIDTTDTLQAARPEFPGKRNTLDALALRYEITNS  154 (228)
T ss_pred             HHHHHHHHHHC--CCEEEEEHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHH
T ss_conf             78899999837--9478752003057789999985145011001144449999999972058843027777878054403


Q ss_pred             CHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             527663765766410023320134531125876899989887753999999998720
Q gi|254780127|r  122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI  178 (675)
Q Consensus       122 ~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~  178 (675)
T Consensus       155 ~R-----------------------------------~~H~A~~DA~~l~~~~~~~~  176 (228)
T TIGR00573       155 HR-----------------------------------ALHGALLDAFILAKLYLVMT  176 (228)
T ss_pred             HH-----------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_conf             77-----------------------------------77317788999999999998