HHsearch alignment for GI: 254780127 and conserved domain: cd05778

>cd05778 DNA_polB_zeta_exo The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.
Probab=96.98  E-value=0.015  Score=35.13  Aligned_cols=152  Identities=18%  Similarity=0.184  Sum_probs=74.9

Q ss_pred             CCEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCE---------EEEEEC------------------------
Q ss_conf             97899980406788700046000026882999999983822---------899978------------------------
Q gi|254780127|r    1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---------VKLWDR------------------------   47 (675)
Q Consensus         1 mk~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~---------~~~~d~------------------------   47 (675)
T Consensus         4 LtiLSfDIe~~sr~~~f---PdP--~~D~I~~I~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~v~~~   78 (231)
T cd05778           4 LTILSLEVHVNTRGDLL---PDP--EFDPISAIFYCIDDDVSPFILDANKVGVIIVDELKSNASNGRIRSGLSGIPVEVV   78 (231)
T ss_pred             EEEEEEEEEECCCCCCC---CCC--CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCEEEEE
T ss_conf             28999999988889999---698--9785789999962687654456652007995586541121022257899649997


Q ss_pred             CCCCHHHHHHHHHHC--CCCCEEEEEEH-HHHHHHHH-H--HCCCC---------------------------------C
Q ss_conf             884221799999864--88981998630-77599999-8--62998---------------------------------7
Q gi|254780127|r   48 TEQSAMPSDLLQYLR--DETVMCVAHNS-LFERILFK-K--TLGID---------------------------------I   88 (675)
Q Consensus        48 ~~~~~~~~~l~~~L~--~~~~~kv~HNa-~FD~~vL~-~--~lGi~---------------------------------i   88 (675)
T Consensus        79 ~~E~eLl~~f~~~v~~~DPDii-~Gyni~~fd~~Yl~~Ra~~l~~~~~~~~lsR~~~~~~~~~~~~~~~~g~~~~~~i~i  157 (231)
T cd05778          79 ESELELFEELIDLVRRFDPDIL-SGYEIQRSSWGYLIERAAALGIDDLLDEISRVPSDSNGKFGDRDDEWGYTHTSGIKI  157 (231)
T ss_pred             CCHHHHHHHHHHHHHHHCCCEE-EECCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEE
T ss_conf             9999999999999997099989-622556686189999999858620466607787665421023432355644415763


Q ss_pred             CCCCEEEHHHHHH-HHC-CCCCHHHHHHH-HCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             8650454588999-858-89997899998-08898652766376576641002332013453112587689998988775
Q gi|254780127|r   89 PSKRWICTSVLAR-TNG-LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR  165 (675)
Q Consensus        89 ~~~~~~DTmi~A~-~l~-~p~sL~~la~~-lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~  165 (675)
T Consensus       158 ~GRi~lDl~~~~r~e~kL~sYsLe~V~~~~L~e~k~---~~~~~~l~~~~~-------------~g~~~~r~~v~~Yclk  221 (231)
T cd05778         158 VGRHILNVWRLMRSELALTNYTLENVVYHVLHQRIP---LYSNKTLTEWYK-------------SGSASERWRVLEYYLK  221 (231)
T ss_pred             CCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHCCCCC---CCCHHHHHHHHH-------------CCCHHHHHHHHEEEHH
T ss_conf             418998519999753584438799999999679888---899999999997-------------4998785164400075


Q ss_pred             HHHHHHHHH
Q ss_conf             399999999
Q gi|254780127|r  166 DVEATRELF  174 (675)
Q Consensus       166 Dv~~~~~L~  174 (675)
T Consensus       222 d~~l~l~Ll  230 (231)
T cd05778         222 RVRLNLEIL  230 (231)
T ss_pred             HHHHHHHHH
T ss_conf             305158652