HHsearch alignment for GI: 254780127 and conserved domain: cd05778
>cd05778 DNA_polB_zeta_exo The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.
Probab=96.98 E-value=0.015 Score=35.13 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=74.9
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCE---------EEEEEC------------------------
Q ss_conf 97899980406788700046000026882999999983822---------899978------------------------
Q gi|254780127|r 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---------VKLWDR------------------------ 47 (675)
Q Consensus 1 mk~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~---------~~~~d~------------------------ 47 (675)
T Consensus 4 LtiLSfDIe~~sr~~~f---PdP--~~D~I~~I~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~v~~~ 78 (231)
T cd05778 4 LTILSLEVHVNTRGDLL---PDP--EFDPISAIFYCIDDDVSPFILDANKVGVIIVDELKSNASNGRIRSGLSGIPVEVV 78 (231)
T ss_pred EEEEEEEEEECCCCCCC---CCC--CCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCCCCCCEEEEE
T ss_conf 28999999988889999---698--9785789999962687654456652007995586541121022257899649997
Q ss_pred CCCCHHHHHHHHHHC--CCCCEEEEEEH-HHHHHHHH-H--HCCCC---------------------------------C
Q ss_conf 884221799999864--88981998630-77599999-8--62998---------------------------------7
Q gi|254780127|r 48 TEQSAMPSDLLQYLR--DETVMCVAHNS-LFERILFK-K--TLGID---------------------------------I 88 (675)
Q Consensus 48 ~~~~~~~~~l~~~L~--~~~~~kv~HNa-~FD~~vL~-~--~lGi~---------------------------------i 88 (675)
T Consensus 79 ~~E~eLl~~f~~~v~~~DPDii-~Gyni~~fd~~Yl~~Ra~~l~~~~~~~~lsR~~~~~~~~~~~~~~~~g~~~~~~i~i 157 (231)
T cd05778 79 ESELELFEELIDLVRRFDPDIL-SGYEIQRSSWGYLIERAAALGIDDLLDEISRVPSDSNGKFGDRDDEWGYTHTSGIKI 157 (231)
T ss_pred CCHHHHHHHHHHHHHHHCCCEE-EECCCCCCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCCCEEEE
T ss_conf 9999999999999997099989-622556686189999999858620466607787665421023432355644415763
Q ss_pred CCCCEEEHHHHHH-HHC-CCCCHHHHHHH-HCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 8650454588999-858-89997899998-08898652766376576641002332013453112587689998988775
Q gi|254780127|r 89 PSKRWICTSVLAR-TNG-LPSSLKNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 (675)
Q Consensus 89 ~~~~~~DTmi~A~-~l~-~p~sL~~la~~-lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~ 165 (675)
T Consensus 158 ~GRi~lDl~~~~r~e~kL~sYsLe~V~~~~L~e~k~---~~~~~~l~~~~~-------------~g~~~~r~~v~~Yclk 221 (231)
T cd05778 158 VGRHILNVWRLMRSELALTNYTLENVVYHVLHQRIP---LYSNKTLTEWYK-------------SGSASERWRVLEYYLK 221 (231)
T ss_pred CCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHCCCCC---CCCHHHHHHHHH-------------CCCHHHHHHHHEEEHH
T ss_conf 418998519999753584438799999999679888---899999999997-------------4998785164400075
Q ss_pred HHHHHHHHH
Q ss_conf 399999999
Q gi|254780127|r 166 DVEATRELF 174 (675)
Q Consensus 166 Dv~~~~~L~ 174 (675)
T Consensus 222 d~~l~l~Ll 230 (231)
T cd05778 222 RVRLNLEIL 230 (231)
T ss_pred HHHHHHHHH
T ss_conf 305158652