HHsearch alignment for GI: 254780127 and conserved domain: cd06127

>cd06127 DEDDh DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.
Probab=98.48  E-value=4.8e-06  Score=58.15  Aligned_cols=46  Identities=33%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             HHHHHHCCCCCEEEEEEHHHHHHHHHHH---CCCCCCCCCEEEHHHHHHHH
Q ss_conf             9999864889819986307759999986---29987865045458899985
Q gi|254780127|r   56 DLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSKRWICTSVLARTN  103 (675)
Q Consensus        56 ~l~~~L~~~~~~kv~HNa~FD~~vL~~~---lGi~i~~~~~~DTmi~A~~l  103 (675)
T Consensus        72 ~~~~~l~~--~~lv~hN~~FD~~~L~~~~~~~~~~~~~~~~iDt~~~~~~~  120 (159)
T cd06127          72 EFLEFLGG--RVLVAHNASFDLRFLNRELRRLGGPPLPNPWIDTLRLARRL  120 (159)
T ss_pred             HHHHHCCC--CEEEECCHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHH
T ss_conf             99873156--34651588899999999999839998899666479999997