HHsearch alignment for GI: 254780127 and conserved domain: pfam00476

>pfam00476 DNA_pol_A DNA polymerase family A.
Probab=100.00  E-value=0  Score=620.30  Aligned_cols=366  Identities=23%  Similarity=0.273  Sum_probs=313.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHHC--CCCCH
Q ss_conf             08899999999999999999999986305766888856889999999728999888-----965889999744--89854
Q gi|254780127|r  201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHS--NITQL  273 (675)
Q Consensus       201 vD~e~l~~~~~~~~~~~~~~~~~i~~~~g~~~~n~~S~~ql~~~L~~~~g~~~~~~-----~k~~~~~~l~~~--~~~~~  273 (675)
T Consensus         1 vd~~~l~~~~~~l~~~~~~l~~~i~~~aG~~f-N~~S~~ql~~vLf~~l~l~~~~~t~~~g~~st~~~~L~~l~~~~hp~   79 (383)
T pfam00476         1 VDVEYLEELSNELGAQLADLEFKIPELAGEEF-NLGSPKQLGVLLFEELGLPKTKKTDKTGARSTNADVLESLREDAHEI   79 (383)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH
T ss_conf             98899999999999999999999999959976-99998999998497359999997789999867899999876168869


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHCC-CCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             8999999999754300035668873056-884522002113221001110688855477776652345654431024445
Q gi|254780127|r  274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET  352 (675)
Q Consensus       274 ~~~ll~~r~~~~~~~~~~~~~l~~~~~~-dGRih~~~~~~gAt~TGR~S~~~pNlQnlPr~~~~~~~~~~~~~~~~~~~~  352 (675)
T Consensus        80 ~~~il~~R~~~Kl~~-t~~~~l~~~~~~~~gRih~~~nq~g-t~TGRlSs~~PNlQniP~~~------------------  139 (383)
T pfam00476        80 IKIILEYRQLSKLQS-TYVDKLPLMIDPDDGRIHTSYNQAG-TATGRLSSTDPNLQNIPIRN------------------  139 (383)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCEECCEEECCC-CCEEECCCCCCCCCCCCCCC------------------
T ss_conf             999999999999999-9999988862678986801242264-20220356798645799888------------------


Q ss_pred             CCCCCCCCCHHHHEEEECCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHCC
Q ss_conf             54443221013212147699878999733548505886622876786654044410000157760875110570221006
Q gi|254780127|r  353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG  432 (675)
Q Consensus       353 ~~~~~~~~~~~iR~~f~a~~G~~lv~aDySqiElRvlA~ls~d~~li~~f~~g~D~h~~tA~~~~~~~~~~v~~~~R~~a  432 (675)
T Consensus       140 ------~~g~~iR~~Fva~~G~~lv~aDySQiElRilA~ls~D~~l~~af~~g~Dih~~tA~~ifg~~~~~v~~~~R~~A  213 (383)
T pfam00476       140 ------EYGREIRAAFIAEPGYVLVAADYSQIELRILAHLSGDENLIEAFRTGADIHTLTAADIFGVDLHEVTGNQRRNA  213 (383)
T ss_pred             ------CCCHHHHHEEECCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHH
T ss_conf             ------43055674362799987885058776688887520548899987027658898899984999788685567677


Q ss_pred             CCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHH
Q ss_conf             42100133078877898878870888640366666566676547889999999998751110103108897889999998
Q gi|254780127|r  433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA  512 (675)
Q Consensus       433 K~~~~gl~YG~G~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~  512 (675)
T Consensus       214 K~~~fGi~YG~g~~~La~--------------------------------------------~l~is~~eA~~~i~~~~~  249 (383)
T pfam00476       214 KTFNFGRIYGASAKGLSQ--------------------------------------------LLGISREEAKEFIEKYFE  249 (383)
T ss_pred             HHHHHHHHHCCCHHHHHH--------------------------------------------HHCCCHHHHHHHHHHHHH
T ss_conf             771316644846889998--------------------------------------------858889999999999999


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCHHHHHHCCCHHHHHHHHH
Q ss_conf             67307899999999999996337214201322234432124456411224631131024520123320310012357765
Q gi|254780127|r  513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT  592 (675)
Q Consensus       513 ~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~psGR~l~~~~~~~~~~~~~~~~~~~~r~~~  592 (675)
T Consensus       250 ~yp~i~~~~~~~~~~a~~---~g-----------------------~v~T~~GRrr~lp~~~~~~~~~~---~~~~r---  297 (383)
T pfam00476       250 RFPGVKRYREKTRKEAKK---GG-----------------------YVETLFGRRRYLPDIDSRNRSLR---EAAER---  297 (383)
T ss_pred             HCHHHHHHHHHHHHHHHH---CC-----------------------CCCCCCCCEEECCCCCCCCHHHH---HHHHH---
T ss_conf             783699999999999996---89-----------------------61145687675577566678888---67767---


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCEEEEECCEEEEECCCCHHHHHH-HHHHHHCCCCCCCCCCCCEE
Q ss_conf             3355777674798999999999999967------9818999535899967847899999-99998467630216984157
Q gi|254780127|r  593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKA  665 (675)
Q Consensus       593 ~g~k~~n~~iQgtAaDi~k~am~~l~~~------g~~ivl~VHDElv~evp~~~~~~~~-~i~~~M~~~p~wa~~~pl~a  665 (675)
T Consensus       298 ---~a~N~~IQGsAADi~k~Ami~i~~~l~~~~~~~~lvlqVHDElv~evp~~~~~~~~~~v~~~Me~~~~--l~VPl~v  372 (383)
T pfam00476       298 ---AALNTPIQGSAADILKLAMIKLDEALVEKGLDARMCLQVHDEIVFEVPKEEAEAVAAQIKELMERAMF--LDVPLLV  372 (383)
T ss_pred             ---HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHHHCC--CCCCEEE
T ss_conf             ---65353268689999999999999999854999789996354118997689999999999999960427--8996796


Q ss_pred             ECCCCCCCC
Q ss_conf             303114631
Q gi|254780127|r  666 EGYEAKRYR  674 (675)
Q Consensus       666 ~~~~~~~y~  674 (675)
T Consensus       373 ~~~~G~~Wg  381 (383)
T pfam00476       373 EVGQGRNWF  381 (383)
T ss_pred             ECCCCCCHH
T ss_conf             538278801