HHsearch alignment for GI: 254780127 and conserved domain: pfam00476
>pfam00476 DNA_pol_A DNA polymerase family A.
Probab=100.00 E-value=0 Score=620.30 Aligned_cols=366 Identities=23% Similarity=0.273 Sum_probs=313.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCC-----CHHHHHHHHHHC--CCCCH
Q ss_conf 08899999999999999999999986305766888856889999999728999888-----965889999744--89854
Q gi|254780127|r 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-----SEGTLKSILSHS--NITQL 273 (675)
Q Consensus 201 vD~e~l~~~~~~~~~~~~~~~~~i~~~~g~~~~n~~S~~ql~~~L~~~~g~~~~~~-----~k~~~~~~l~~~--~~~~~ 273 (675)
T Consensus 1 vd~~~l~~~~~~l~~~~~~l~~~i~~~aG~~f-N~~S~~ql~~vLf~~l~l~~~~~t~~~g~~st~~~~L~~l~~~~hp~ 79 (383)
T pfam00476 1 VDVEYLEELSNELGAQLADLEFKIPELAGEEF-NLGSPKQLGVLLFEELGLPKTKKTDKTGARSTNADVLESLREDAHEI 79 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHH
T ss_conf 98899999999999999999999999959976-99998999998497359999997789999867899999876168869
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHCC-CCCCCCCEEECCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 8999999999754300035668873056-884522002113221001110688855477776652345654431024445
Q gi|254780127|r 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 (675)
Q Consensus 274 ~~~ll~~r~~~~~~~~~~~~~l~~~~~~-dGRih~~~~~~gAt~TGR~S~~~pNlQnlPr~~~~~~~~~~~~~~~~~~~~ 352 (675)
T Consensus 80 ~~~il~~R~~~Kl~~-t~~~~l~~~~~~~~gRih~~~nq~g-t~TGRlSs~~PNlQniP~~~------------------ 139 (383)
T pfam00476 80 IKIILEYRQLSKLQS-TYVDKLPLMIDPDDGRIHTSYNQAG-TATGRLSSTDPNLQNIPIRN------------------ 139 (383)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCEECCEEECCC-CCEEECCCCCCCCCCCCCCC------------------
T ss_conf 999999999999999-9999988862678986801242264-20220356798645799888------------------
Q ss_pred CCCCCCCCCHHHHEEEECCCCCEEEEEECCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHCC
Q ss_conf 54443221013212147699878999733548505886622876786654044410000157760875110570221006
Q gi|254780127|r 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 (675)
Q Consensus 353 ~~~~~~~~~~~iR~~f~a~~G~~lv~aDySqiElRvlA~ls~d~~li~~f~~g~D~h~~tA~~~~~~~~~~v~~~~R~~a 432 (675)
T Consensus 140 ------~~g~~iR~~Fva~~G~~lv~aDySQiElRilA~ls~D~~l~~af~~g~Dih~~tA~~ifg~~~~~v~~~~R~~A 213 (383)
T pfam00476 140 ------EYGREIRAAFIAEPGYVLVAADYSQIELRILAHLSGDENLIEAFRTGADIHTLTAADIFGVDLHEVTGNQRRNA 213 (383)
T ss_pred ------CCCHHHHHEEECCCCCEEEEECHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHH
T ss_conf ------43055674362799987885058776688887520548899987027658898899984999788685567677
Q ss_pred CCCHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHH
Q ss_conf 42100133078877898878870888640366666566676547889999999998751110103108897889999998
Q gi|254780127|r 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 (675)
Q Consensus 433 K~~~~gl~YG~G~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~ 512 (675)
T Consensus 214 K~~~fGi~YG~g~~~La~--------------------------------------------~l~is~~eA~~~i~~~~~ 249 (383)
T pfam00476 214 KTFNFGRIYGASAKGLSQ--------------------------------------------LLGISREEAKEFIEKYFE 249 (383)
T ss_pred HHHHHHHHHCCCHHHHHH--------------------------------------------HHCCCHHHHHHHHHHHHH
T ss_conf 771316644846889998--------------------------------------------858889999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCHHHHHHCCCHHHHHHHHH
Q ss_conf 67307899999999999996337214201322234432124456411224631131024520123320310012357765
Q gi|254780127|r 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 (675)
Q Consensus 513 ~~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~psGR~l~~~~~~~~~~~~~~~~~~~~r~~~ 592 (675)
T Consensus 250 ~yp~i~~~~~~~~~~a~~---~g-----------------------~v~T~~GRrr~lp~~~~~~~~~~---~~~~r--- 297 (383)
T pfam00476 250 RFPGVKRYREKTRKEAKK---GG-----------------------YVETLFGRRRYLPDIDSRNRSLR---EAAER--- 297 (383)
T ss_pred HCHHHHHHHHHHHHHHHH---CC-----------------------CCCCCCCCEEECCCCCCCCHHHH---HHHHH---
T ss_conf 783699999999999996---89-----------------------61145687675577566678888---67767---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCEEEEECCEEEEECCCCHHHHHH-HHHHHHCCCCCCCCCCCCEE
Q ss_conf 3355777674798999999999999967------9818999535899967847899999-99998467630216984157
Q gi|254780127|r 593 YGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPSWAKGLPLKA 665 (675)
Q Consensus 593 ~g~k~~n~~iQgtAaDi~k~am~~l~~~------g~~ivl~VHDElv~evp~~~~~~~~-~i~~~M~~~p~wa~~~pl~a 665 (675)
T Consensus 298 ---~a~N~~IQGsAADi~k~Ami~i~~~l~~~~~~~~lvlqVHDElv~evp~~~~~~~~~~v~~~Me~~~~--l~VPl~v 372 (383)
T pfam00476 298 ---AALNTPIQGSAADILKLAMIKLDEALVEKGLDARMCLQVHDEIVFEVPKEEAEAVAAQIKELMERAMF--LDVPLLV 372 (383)
T ss_pred ---HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECEEEEEEECHHHHHHHHHHHHHHHHHHCC--CCCCEEE
T ss_conf ---65353268689999999999999999854999789996354118997689999999999999960427--8996796
Q ss_pred ECCCCCCCC
Q ss_conf 303114631
Q gi|254780127|r 666 EGYEAKRYR 674 (675)
Q Consensus 666 ~~~~~~~y~ 674 (675)
T Consensus 373 ~~~~G~~Wg 381 (383)
T pfam00476 373 EVGQGRNWF 381 (383)
T ss_pred ECCCCCCHH
T ss_conf 538278801