HHsearch alignment for GI: 254780127 and conserved domain: pfam03104
>pfam03104 DNA_pol_B_exo DNA polymerase family B, exonuclease domain. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold.
Probab=94.75 E-value=0.17 Score=28.01 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=38.3
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECC----CE-----------------EEEEECCCCCHHHHHHHH
Q ss_conf 978999804067887000460000268829999999838----22-----------------899978884221799999
Q gi|254780127|r 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDD----EP-----------------VKLWDRTEQSAMPSDLLQ 59 (675)
Q Consensus 1 mk~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~----~~-----------------~~~~d~~~~~~~~~~l~~ 59 (675)
T Consensus 86 lrilsfDIEc~~~~g-----~FP~~~~d~IiqIs~~~~~~g~~~~~~~~~~tl~~~~~i~~~~~V~~f~~E~~ll~~f~~ 160 (254)
T pfam03104 86 LRVLSFDIECTSLKG-----KFPENEKDPIIQISCMLYREGEPDPIEDKLFTLKSCALIEIGGEVYIFPSEKELLRRFFE 160 (254)
T ss_pred CEEEEEEEEECCCCC-----CCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHH
T ss_conf 539999889588899-----999878983899998988567898632069980787767789779995999999999999
Q ss_pred HHC--CCCCEEEEEEH-HHHHHHHHH
Q ss_conf 864--88981998630-775999998
Q gi|254780127|r 60 YLR--DETVMCVAHNS-LFERILFKK 82 (675)
Q Consensus 60 ~L~--~~~~~kv~HNa-~FD~~vL~~ 82 (675)
T Consensus 161 ~i~~~dpdii-~gyNi~~FD~~yl~~ 185 (254)
T pfam03104 161 FIRQYDPDII-TGYNGDNFDWPYILN 185 (254)
T ss_pred HHHHCCCCEE-EECCCCCCCHHHHHH
T ss_conf 9875199899-966787788899999