HHsearch alignment for GI: 254780127 and conserved domain: pfam04857
>pfam04857 CAF1 CAF1 family ribonuclease. The major pathways of mRNA turnover in eukaryotes initiate with shortening of the polyA tail. CAF1 encodes a critical component of the major cytoplasmic deadenylase in yeast. Both Caf1p is required for normal mRNA deadenylation in vivo and localizes to the cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific exonuclease activity. Some members of this family include and inserted RNA binding domain pfam01424. This family of proteins is related to other exonucleases pfam00929 (Bateman A pers. obs.). The crystal structure of Saccharomyces cerevisiae Pop2 has been resolved at 2.3 Angstrom#resolution.
Probab=93.65 E-value=0.22 Score=27.29 Aligned_cols=59 Identities=22% Similarity=0.174 Sum_probs=41.8
Q ss_pred CCCCCEEEEEEHHHHHHHHHHHC-CCCCCC-------------CCEEEHHHHHHHHC-----CCCCHHHHHHHHCCCC
Q ss_conf 48898199863077599999862-998786-------------50454588999858-----8999789999808898
Q gi|254780127|r 62 RDETVMCVAHNSLFERILFKKTL-GIDIPS-------------KRWICTSVLARTNG-----LPSSLKNACLALNFSE 120 (675)
Q Consensus 62 ~~~~~~kv~HNa~FD~~vL~~~l-Gi~i~~-------------~~~~DTmi~A~~l~-----~p~sL~~la~~lgl~~ 120 (675)
T Consensus 137 ~~~~~~wv~f~g~yD~~yl~k~l~g~~LP~~~~eF~~~l~~~FP~vyD~K~la~~~~~~~~~~~~gL~~lA~~L~v~r 214 (235)
T pfam04857 137 NISSVTWVTFHGLYDFGYLLKLLTGGPLPETLDDFLELLRELFPRVYDTKYLAKFCFELDGGSNGGLQELADLLGVNR 214 (235)
T ss_pred CCCCCEEEEECCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCC
T ss_conf 579987998172778999999974998999899999999997771750999998522135875578999999749978