HHsearch alignment for GI: 254780127 and conserved domain: pfam10108
>pfam10108 Exon_PolB Predicted 3'-5' exonuclease related to the exonuclease domain of PolB. This domain is found in various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Probab=97.76 E-value=0.0024 Score=40.26 Aligned_cols=131 Identities=18% Similarity=0.271 Sum_probs=77.7
Q ss_pred EEEEEEEE--ECCCEEEEEECCCCC----HHHHHHHHHHCCCCCEEEEEEH-HHHHHHHHH---HCCCCCCC--------
Q ss_conf 29999999--838228999788842----2179999986488981998630-775999998---62998786--------
Q gi|254780127|r 29 VITLCAYA--WDDEPVKLWDRTEQS----AMPSDLLQYLRDETVMCVAHNS-LFERILFKK---TLGIDIPS-------- 90 (675)
Q Consensus 29 ~I~~i~~a--~~~~~~~~~d~~~~~----~~~~~l~~~L~~~~~~kv~HNa-~FD~~vL~~---~lGi~i~~-------- 90 (675)
T Consensus 10 riVaIs~v~~~~~~~~~v~slg~~~~~E~~ll~~F~~~i~~~~P~LVs~NG~gFDlPvL~~RAl~~gi~ap~~~~~~~~~ 89 (211)
T pfam10108 10 RIVAISAVIADDDGGFKVWSLGDPESSEKELIQRFFDGIEKYTPQLVSFNGRGFDLPVLHYRALKHGVSAPRYFDTGDRD 89 (211)
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHCCCCC
T ss_conf 16999999996699279987889998999999999999984398288656865548999999998188850787567876
Q ss_pred CCE-----------EEHHHHHHHHC--CCCCHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 504-----------54588999858--89997899998088986527663765766410023320134531125876899
Q gi|254780127|r 91 KRW-----------ICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 (675)
Q Consensus 91 ~~~-----------~DTmi~A~~l~--~p~sL~~la~~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (675)
T Consensus 90 ~kw~nY~~Ry~~~H~DLmd~l~~~g~~~~~~Ld~~a~l~G~PGK~--~~~G~~V~~~--------------~~--~G~l~ 151 (211)
T pfam10108 90 FKWNNYFNRYSTRHLDLMDLLSGYGARANAPLDEVAALLGLPGKM--GVDGSQVWEL--------------YQ--AGKIE 151 (211)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCC--CCCHHHHHHH--------------HH--CCCHH
T ss_conf 654441123565445489998732886778989999981999878--7764589999--------------98--59888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 98988775399999999872
Q gi|254780127|r 158 LFGEYCKRDVEATRELFKRL 177 (675)
Q Consensus 158 ~~~~Ya~~Dv~~~~~L~~~L 177 (675)
T Consensus 152 ~I~~YCe~DvlnTylv~LR~ 171 (211)
T pfam10108 152 EIRDYCETDVLNTYLVYLRF 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999887689999999999