HHsearch alignment for GI: 254780127 and conserved domain: smart00479
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases.
Probab=98.41 E-value=9.5e-06 Score=56.22 Aligned_cols=87 Identities=28% Similarity=0.332 Sum_probs=56.8
Q ss_pred HHHHHHCCCCCEEEEEEHHHHHHHHHHHC---CCCCC-CCCEEEHHHHHHHHCC--CCCHHHHHHHHCCCCCCHHHHHCH
Q ss_conf 99998648898199863077599999862---99878-6504545889998588--999789999808898652766376
Q gi|254780127|r 56 DLLQYLRDETVMCVAHNSLFERILFKKTL---GIDIP-SKRWICTSVLARTNGL--PSSLKNACLALNFSEHLTKMEEGK 129 (675)
Q Consensus 56 ~l~~~L~~~~~~kv~HNa~FD~~vL~~~l---Gi~i~-~~~~~DTmi~A~~l~~--p~sL~~la~~lgl~~~~~kd~~gk 129 (675)
T Consensus 73 ~~~~~l~~-~~~v~~~~~~fD~~~L~~~~~~~~~~~~~~~~~~dt~~~~~~~~~~~~~~L~~l~~~~~i~~~~~------ 145 (169)
T smart00479 73 ELLEFLKG-KILVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGRKYSLKKLAERLGLEVIGR------ 145 (169)
T ss_pred HHHHHHCC-CCCHHCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCC------
T ss_conf 99986048-74510367999999999999981899886652462999999975885458999999859998999------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 57664100233201345311258768999898877539999999987200
Q gi|254780127|r 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 (675)
Q Consensus 130 ~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L~~ 179 (675)
T Consensus 146 ------------------------------~H~Al~Da~~t~~v~~~l~~ 165 (169)
T smart00479 146 ------------------------------AHRALDDARATAKLFKKLVE 165 (169)
T ss_pred ------------------------------CCCHHHHHHHHHHHHHHHHH
T ss_conf ------------------------------92979999999999999997