HHsearch alignment for GI: 254780127 and conserved domain: smart00486
>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=98.03 E-value=0.00037 Score=45.71 Aligned_cols=157 Identities=18% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHCCCCEEEEEEEEECCCEE--------------------EEEECCCCCHHHHHHHHH
Q ss_conf 978999804067887000460000268829999999838228--------------------999788842217999998
Q gi|254780127|r 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--------------------KLWDRTEQSAMPSDLLQY 60 (675)
Q Consensus 1 mk~l~lD~ET~s~~dl~~~Gl~~y~~~~~I~~i~~a~~~~~~--------------------~~~d~~~~~~~~~~l~~~ 60 (675)
T Consensus 3 ~~i~s~DIEt~~~~~~~---p~~~~~~d~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~ll~~f~~~ 79 (471)
T smart00486 3 LKILSFDIETYTDGGLF---PDPLIFEDEIIQISLVINDGDKKGPEERICFTLGTCKEIDGVEVYEFNNEKELLKAFLEF 79 (471)
T ss_pred CEEEEEEEEECCCCCCC---CCCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHH
T ss_conf 46999998966799999---998889984999999982198787887754303676778998899809999999999999
Q ss_pred HC--CCCCEEEEEEH-HHHHHHHHHH---CCCCC---------------------------------CCCCEEEHHHHHH
Q ss_conf 64--88981998630-7759999986---29987---------------------------------8650454588999
Q gi|254780127|r 61 LR--DETVMCVAHNS-LFERILFKKT---LGIDI---------------------------------PSKRWICTSVLAR 101 (675)
Q Consensus 61 L~--~~~~~kv~HNa-~FD~~vL~~~---lGi~i---------------------------------~~~~~~DTmi~A~ 101 (675)
T Consensus 80 i~~~dpdii-~g~N~~~FD~~yi~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~D~~~~~~ 158 (471)
T smart00486 80 IKKYDPDII-YGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKGRLVIDLYNLYK 158 (471)
T ss_pred HHHCCCCEE-EECCCCCCCHHHHHHHHHHHCCCHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEEEEEHHHHHH
T ss_conf 987199999-9658878768999999998489647763735778764320332101256631489985599978899998
Q ss_pred H-HC-CCCCHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8-58-8999789999808898652766376576641002332013453112587689998988775399999999872
Q gi|254780127|r 102 T-NG-LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 (675)
Q Consensus 102 ~-l~-~p~sL~~la~~lgl~~~~~kd~~gk~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ya~~Dv~~~~~L~~~L 177 (675)
T Consensus 159 ~~~~l~sy~L~~v~~~~l~-~~k-~d~~~~~i~~~--------------~~~~~~~~~~~~~Y~~~D~~l~~~l~~~~ 220 (471)
T smart00486 159 NKLKLPSYKLDTVAEYLLG-KEK-DDLPYKDIPEL--------------YNLNYKLRDELLEYCIQDAVLTLKLFNKL 220 (471)
T ss_pred HHHCCCCCCHHHHHHHHHC-CCC-CCCCHHHHHHH--------------HHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8604466888999999957-788-88998999999--------------85393679999999999999999999986