BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] (675 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1] gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2] gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2] gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1] Length = 675 Score = 1398 bits (3619), Expect = 0.0, Method: Compositional matrix adjust. Identities = 675/675 (100%), Positives = 675/675 (100%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 1396 bits (3613), Expect = 0.0, Method: Compositional matrix adjust. Identities = 674/675 (99%), Positives = 674/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 1395 bits (3612), Expect = 0.0, Method: Compositional matrix adjust. Identities = 673/675 (99%), Positives = 673/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE VS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSETVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 1395 bits (3611), Expect = 0.0, Method: Compositional matrix adjust. Identities = 673/675 (99%), Positives = 673/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 1394 bits (3607), Expect = 0.0, Method: Compositional matrix adjust. Identities = 672/675 (99%), Positives = 672/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD PYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 1393 bits (3606), Expect = 0.0, Method: Compositional matrix adjust. Identities = 672/675 (99%), Positives = 672/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 PLKAEGYEAKRYRK Sbjct: 661 FPLKAEGYEAKRYRK 675 >gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 673 Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 499/675 (73%), Positives = 564/675 (83%), Gaps = 2/675 (0%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T MPSDLL++ Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 LTKMEEGKALIARFCKGSI+ PYD RANHVQAWQLFGEYCKRDVEATREL+KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER+KLDE++ LT G+I SSR+T Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L YLFL G+DL DM+E T+ + LS NITQ AKD++ NRL+SS SAILKLNTLS AVS Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQPNITQRAKDILNNRLSSSQSAILKLNTLSGAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 D RLRGTLQFYGASRTGRWSGCVFQPQNLPR S E + + I++ N DPL A Sbjct: 301 PDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSNFPSD--DPLRFA 358 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIAS GKKLVVADLAGIEARVLAWIAGE WK+ AFANGEDIY T Y+KAFN P Sbjct: 359 SDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFNIP 418 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+K+QRAIGKVMELALGYQGGA+VF+TMAS+ GLDL+QFS+++K T+T +DWEQA+ Sbjct: 419 LSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQAQR 478 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 LWMQ+ YPEFAV D IGTACELVK AWRAKH+GV+QLWKD E F CV+++G SISA Sbjct: 479 RCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 538 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVA VP L+M++ ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN Sbjct: 539 RRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 598 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDIL GM NAT+ GYDIVLTVHDEIV ETPDTP FS LC LMT+NP WAKG Sbjct: 599 IVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWAKG 658 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEA RYRK Sbjct: 659 LPLKAEGYEALRYRK 673 >gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 675 Score = 1022 bits (2642), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/675 (72%), Positives = 567/675 (84%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T MPSDLL++ Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 LTKMEEGKALIARFCKGSI+ PYD RANHVQAWQLFGEYCKRDVEATREL+KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER++LDE+ +LT G+I S+R+T Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L YLFL TG+DL DM+E T+ + LS +I QL+K ++ NRL+SS SAILKLNTLS AVS Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQPDIPQLSKAILNNRLSSSQSAILKLNTLSGAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 D RLRGTLQF+GASRTGRWSGCVFQPQNLPRQ + + + + I+ L+ G I DPL A Sbjct: 301 PDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIKDPLRFA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIAS GKKL+VADLAGIEARVLAW+AGE WK+ AFANGEDIY T Y+KAFN P Sbjct: 361 SDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFNVP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+K+QRAIGKVMELALGYQGGA+VF+ MAS GL+LQQFS+++K+T+T EDWEQA+ Sbjct: 421 LSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQAQR 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 LWMQ+ +PEFAV D IGTACELVK+AWRAKH+GV+QLWKD E F CV+++G SISA Sbjct: 481 RCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRV VP L+M++ ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN Sbjct: 541 RRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDIL GM NATK GYDIVLTVHDEIV E PDTP FS LCSLMT+NP+WAKG Sbjct: 601 IVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEA RYRK Sbjct: 661 LPLKAEGYEAVRYRK 675 >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus] Length = 675 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-ADPLG 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L T DPL Sbjct: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 Query: 659 KGLPLKAEGYEAKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYESKRYRK 675 >gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 273/688 (39%), Positives = 380/688 (55%), Gaps = 24/688 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L++D+ET S +P+ K G +YAE I L A+A ++ V++WD T++S +P++L Q L D Sbjct: 5 LWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQALSD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + AHNS F+R + + GI I RW T V A +GLP +L C L Sbjct: 64 PNTIIYAHNSHFDRTMLNHS-GIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVPLDKA 122 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS- 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL + Sbjct: 123 KDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLPSWNY 182 Query: 182 -DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E + W DQ INDRG +D+ L E + E+K+L + LTD ++++ Q A Sbjct: 183 CDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAATQRDA 242 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L ++ G+DL DM + TL+ ++ +I ++L+ RL SS ++ K L VS Sbjct: 243 LLQHISAAFGVDLPDMQKSTLERRINDPDIPLPLRELLAIRLQSSTTSTSKYKALMNGVS 302 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-L 357 SDGRLRGTLQF GASRTGRW+G +FQPQNLPR + + + I+AL G + I D + Sbjct: 303 SDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLIYDDIM 362 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTT 412 L S +R CI+A GKKLVV+DL+ IE R+LAW+AGE WKI AF+ G D+Y Sbjct: 363 QLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGADLYKLA 422 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 YA+AFN + V K R IGKVMEL LGY GG F T A LDL + ++ Sbjct: 423 YARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAALPNIPP 482 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + A S + + + + + + T C+ +K+ WR H + W +L + + Sbjct: 483 KVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDTVRHAI 541 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTATSQL 587 G R +L +RR K + IVLPS R + Y + D SY+ N + + Sbjct: 542 SSPGITFPCR-----KLKVRRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNPYSRKW 596 Query: 588 MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 R +TYGGKL EN+ QA +RD+L M +GYDIVLTVHDE+++E PD P F+ L Sbjct: 597 QRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAFNHEHL 656 Query: 648 CSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L+ NP WA LPL A G+EA YRK Sbjct: 657 SELLATNPEWALDLPLSAGGFEAYHYRK 684 >gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] Length = 687 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/689 (38%), Positives = 373/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPHLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + F + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYNESVKHKSTFGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703] Length = 699 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 268/707 (37%), Positives = 381/707 (53%), Gaps = 46/707 (6%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 KL+ D ET P+ K G AYAE + + YA +D+PV WD T + MP DL YL+ Sbjct: 4 KLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYLQ 62 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPS------KRWICTSVLARTNGLPSSLKNACLAL 116 D ++ A NS F+R + + D+PS +RW T V A +GLP L C L Sbjct: 63 DPSIEIYAQNSHFDRTMMRH----DMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEIL 118 Query: 117 NFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ K +EGKALI FCK + +S + T H + W+ F +Y D+EA R + K Sbjct: 119 GITQDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDK 178 Query: 176 RLIPL---SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P+ E LW DQ INDRG ++D L + E+K L + LTD + Sbjct: 179 KL-PVWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEV 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 +++ Q AL ++ G+DL DM + TL+ ++ + + ++L+ RL +S ++ K Sbjct: 238 QAATQRDALLRHIVESFGVDLPDMQKSTLERRIADPELPSVLRELLAIRLQASTTSTSKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 TL + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + I+AL G Sbjct: 298 KTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCA 357 Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN----- 404 + + L S +R CI+A GKKLVV+DL+ IE RVLAW+AGE+WK++AF + Sbjct: 358 DLLFDNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTII 417 Query: 405 -----------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G D+Y YA+AFN D V+K QR IGKVMEL LG+ GG F T A Sbjct: 418 GYDEGGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFAL 477 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 GLDL + + +A+S + Q F + +++ AC+ +K+ WR Sbjct: 478 VYGLDLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVF-IACDSLKRMWRNA 536 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 H + W ++ + I+ ++ +L +RR + I LPS R + Y + Sbjct: 537 HPETVSFWSEIENTVRRAI-----INPKQTFVCRKLKIRRDGSWLRIQLPSGRSVCYPGI 591 Query: 574 K--GD-CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + GD SY+ NT + + R +TYGGKL EN QA +RD++ M GY+I LTV Sbjct: 592 RIEGDKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTV 651 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE+++E PDT F+ L L+ NP WA LPL A G+EA YRK Sbjct: 652 HDEVLTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698 >gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11] gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11] gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1] Length = 687 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 262/689 (38%), Positives = 374/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +DEPV +WD T +P L + + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + F + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYNESVKRKSTFGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1] gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1] gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1] gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1] Length = 688 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 281/695 (40%), Positives = 372/695 (53%), Gaps = 28/695 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MS LF+D+ET P+ + G AYAE+A + L AYA D+ PV +WD MP DL Sbjct: 1 MSTLFLDLETYCEVPI-QNGTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALNF 118 L DE V AHNS F+R + + + D P RW T V A + LP +L + C L Sbjct: 60 LIDENVALCAHNSHFDRTVLRHAMP-DYPLALPRWRDTMVKALAHSLPGALGDLCDILKV 118 Query: 119 SEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K + GK LI FCK S TR H W F EY D+EA R + ++L Sbjct: 119 PTDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKL 178 Query: 178 IPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E LW LDQTINDRG +D DL + + +K L +T G ++++ Sbjct: 179 PAWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAA 238 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 Q A+ ++ G+DL DM + TL+ ++ ++ ++L+ RL +S ++ K TL Sbjct: 239 TQRDAMLRHVLAAYGLDLPDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTL 298 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET--- 352 ++ VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR ++ + + I AL Sbjct: 299 AKGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLL 358 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGED 407 A+ + L S +R CI+A GKKLVVADL+ IE R++AW+AGEDWK+ AF G D Sbjct: 359 FANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPD 418 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +Y YAKAF D V K+QR IGKVMEL LGY+GG F T A+ G+DL + Sbjct: 419 LYKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAW 478 Query: 468 STSTFEDWEQAESHHLWMQDQ-YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + +AE W +Q +F +K K C+ +K+ WR H V WK+L E Sbjct: 479 PSIPADIIAEAEQFLAWRTEQRLGDFGLKPKTF-VVCDALKRLWRRAHPAVSSFWKELEE 537 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYL-- 580 V G+ R L RR + I LPS R L Y D G SY+ Sbjct: 538 AARLAVLRPGTTYDCRT-----LKARRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGV 592 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 N + + R +TYGGKL EN+ QA SRD+L M GY IVL+VHDE ++E D Sbjct: 593 NQYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRD 652 Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 FS L LM NP WA GLPL A G+EA RYRK Sbjct: 653 EFSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687 >gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605] gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605] Length = 687 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 260/689 (37%), Positives = 374/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCDIPINN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKK+VV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYGESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010] Length = 687 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 260/689 (37%), Positives = 375/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL ENI QA +RDIL M GY IVLTVHDE+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] Length = 687 Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/689 (37%), Positives = 375/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL ENI QA +RDIL M GY IVLTVHDE+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171] gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171] Length = 687 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/689 (37%), Positives = 377/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP- 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + + D Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 IA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL ENI QA +RDIL M GY IVLTVH+E+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718] gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718] Length = 687 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 260/689 (37%), Positives = 377/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L C Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELE----CT 538 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 V+ + + ++ L +RR + I LPS R + Y +G+ +Y+ N+ + + Sbjct: 539 VRTAIA-TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] Length = 687 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 259/689 (37%), Positives = 377/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP +L C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L C Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELE----CT 538 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 V+ + + ++ L +RR + I LPS R + Y +G+ +Y+ N+ + + Sbjct: 539 VRTAIA-TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] Length = 693 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 261/696 (37%), Positives = 377/696 (54%), Gaps = 32/696 (4%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L++D+ET S P+ + G AYA A I L A+A DD PV + + TE +P L LRD Sbjct: 5 LWLDLETYSETPI-RNGTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALRD 63 Query: 64 ETVMCVAHNSLFERILFKKTL-GIDIPS------KRWICTSVLARTNGLPSSLKNACLAL 116 + AHNS F+R + + L P+ RW T V A +GLP SL + C L Sbjct: 64 GETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDIL 123 Query: 117 NFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ K + GKALI FCK + +S T+ H + W+ F +Y D+EA RE+ K Sbjct: 124 GVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREIDK 183 Query: 176 RLIPL---SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P+ E LW DQ INDRG ++D L + E+K+L LTD + Sbjct: 184 KL-PVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEV 242 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 +++ Q L ++ G+ L DM T++ +S ++ ++L+ RL +S ++ K Sbjct: 243 QAATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSDPDLPIELRELLAIRLQASTTSTSKY 302 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 TL + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + I+AL G Sbjct: 303 KTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGCA 362 Query: 353 ---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----AN 404 + + L S +R CI+A GKKLVV+DL+ IE R L W++GE+WK++AF Sbjct: 363 DLLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAGT 422 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 G D+Y+ YA+AFN D V K QR IGKVMEL LG+ GG F T A GLDL ++ Sbjct: 423 GHDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLAK 482 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 +A+S + Q + + +++ AC+ +K+ WR H + W ++ Sbjct: 483 AALPNVPASIQREAQSWYKASVKQKRTYGLSEQVF-IACDSLKRMWRNAHPKTVSFWYEI 541 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL- 580 + + + R+ +L +RR + I LPS R + Y ++ G SY+ Sbjct: 542 EDTVRRAIA-----APRQTFTCRKLKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISYMG 596 Query: 581 -NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 N+ + + R +TYGGKLTEN+ QA +RD++ M +GY+I LTVHDE+++E PDT Sbjct: 597 INSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPDT 656 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 F+ L L+ NP WA LPL A G+EA YRK Sbjct: 657 EQFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692 >gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 669 Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/678 (37%), Positives = 366/678 (53%), Gaps = 45/678 (6%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS- 90 + YA +D+PV WD T + MP DL YL+D ++ A NS F+R + + D+PS Sbjct: 2 IITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRH----DMPSV 57 Query: 91 -----KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPP 144 +RW T V A +GLP L C L ++ K +EGKALI FCK + +S Sbjct: 58 IAGGIERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTI 117 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL---SDGERDLWLLDQTINDRGYRI 201 + T H + W+ F +Y D+EA R + K+L P+ E LW DQ INDRG ++ Sbjct: 118 HRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKL-PVWNYQGKELALWHFDQLINDRGVQM 176 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D L + E+K L + LTD ++++ Q AL ++ G+DL DM + TL Sbjct: 177 DTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTL 236 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 + ++ + + ++L+ RL +S ++ K TL + VS DGRLRGTLQF GASRTGRW+ Sbjct: 237 ERRIADPELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWA 296 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVV 378 G +FQPQNLPR +E + I+AL G + + L S +R CI+A GKKLVV Sbjct: 297 GRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVV 356 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFAN----------------GEDIYVTTYAKAFNTPID 422 +DL+ IE RVLAW+AGE+WK++AF + G D+Y YA+AFN D Sbjct: 357 SDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPD 416 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 V+K QR IGKVMEL LG+ GG F T A GLDL + + +A+S + Sbjct: 417 DVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWY 476 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 Q F + +++ AC+ +K+ WR H + W ++ + I+ ++ Sbjct: 477 QASVKQKRTFGLSEQVF-IACDSLKRMWRNAHPETVSFWSEIENTVRRAI-----INPKQ 530 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--GD-CSYL--NTATSQLMRERTYGGKL 597 +L +RR + I LPS R + Y ++ GD SY+ NT + + R +TYGGKL Sbjct: 531 TFVCRKLKIRRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKL 590 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 EN QA +RD++ M GY+I LTVHDE+++E PDT F+ L L+ NP W Sbjct: 591 AENATQAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEW 650 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+EA YRK Sbjct: 651 ALDLPLSAGGFEAYHYRK 668 >gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 277/736 (37%), Positives = 374/736 (50%), Gaps = 85/736 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAE A + L AYA + PV++WD T + +P DL L D Sbjct: 11 LWGDLETYSPVPMAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F EY +RDV A R++ KRL Sbjct: 129 KDKDGKRLVALFCKPR----PAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG ID DLV + + ++ L + LT G ++++ Sbjct: 185 SHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T+ + + + ++L+ R +S ++ K L Sbjct: 245 QRDALLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E++ I A+ G Sbjct: 305 HCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 365 DDVMALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDG 424 Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 G+DIY YA +F VSKEQR IGK Sbjct: 425 TWHTGAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486 V ELALGY GG F A+ +DL+ + ++ + +W +A Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQQATELLEWTKA-------- 536 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + P F + D+ AC++ K+AWR H + W+ L FA +I A+ Sbjct: 537 NHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ--FAVT----DAIHHPETAHT 589 Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTE 599 + +++R + + LPS R L Y+ D G SY+ T T + R TYGGKL E Sbjct: 590 CCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVE 649 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659 NI QA+SRD+L M GY IVLTVHDEI++E D P F+ L +LM P WA+ Sbjct: 650 NITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAE 709 Query: 660 GLPLKAEGYEAKRYRK 675 GLPL AEG++ RYRK Sbjct: 710 GLPLAAEGFDTYRYRK 725 >gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 271/735 (36%), Positives = 368/735 (50%), Gaps = 83/735 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAE A + L AYA + PV++WD T + +P DL L D Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 70 PGVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F EY +RDV A R++ KRL Sbjct: 129 KDKDGKRLVALFCKPR----PAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG ID DLV + + ++ L + LT G ++++ Sbjct: 185 SHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T+ + + + ++L+ R +S ++ K L Sbjct: 245 QRDALLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR---GETI 353 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E++ I A+ Sbjct: 305 HCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDG 424 Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 G+DIY YA +F VSKEQR IGK Sbjct: 425 CWHTGAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486 V ELALGY GG F A+ +DL+ + ++ + +W +A Sbjct: 485 VQELALGYGGGVGAFAAFAALYHIDLEAMAAQAVFPPLLLQEATELLEWTKA-------- 536 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + P F + D+ AC++ K+AWR H + W+ L + + Sbjct: 537 NHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTH-----TC 590 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTEN 600 + ++ + + + LPS R L Y+ D G SY+ T T + R TYGGKL EN Sbjct: 591 CGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVEN 650 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 I QA+SRD+L M GY IVLTVHDEI++E D P F+ L +LM P WA+G Sbjct: 651 ITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEG 710 Query: 661 LPLKAEGYEAKRYRK 675 LPL AEG++ RYRK Sbjct: 711 LPLAAEGFDTYRYRK 725 >gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust. Identities = 275/728 (37%), Positives = 370/728 (50%), Gaps = 69/728 (9%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F EY +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPR----PAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Sbjct: 185 SHNYTGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 245 QRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G Sbjct: 305 NCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDG 424 Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 G+DIY YA +F V+KEQR IGK Sbjct: 425 TWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 V ELALGY GG F A+ +DL+ ++ E E+ +Q P F Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANQRPTFG 543 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + D+ AC++ K+AWR H + WK L FA +A + M+ Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWKALQ--FAATDAIRHPETAHTCCGI---TMQY 597 Query: 554 HKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISR 607 + + + LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+SR Sbjct: 598 SRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEG 667 D+L M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YEAKRYRK 675 ++ RYRK Sbjct: 718 FQTHRYRK 725 >gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 726 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 275/736 (37%), Positives = 374/736 (50%), Gaps = 85/736 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F EY +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 245 QRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G Sbjct: 305 NCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA---------- 403 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDG 424 Query: 404 ------------------------------NGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 G+DIY YA +F V+K+QR IGK Sbjct: 425 TWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486 V ELALGY GG F A+ +DL+ + ++ + +W +A Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQEATELLEWTKA-------- 536 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + P F + D+ AC++ K+AWR H + W+ L C V + +I A+ Sbjct: 537 NHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 589 Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTE 599 + ++ R + + LPS R L Y+ D G SY+ T T + R TYGGKL E Sbjct: 590 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVE 649 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659 NI QA+SRD+L M GY IVLTVHDEI++E D F+ L +LM P WA+ Sbjct: 650 NITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 709 Query: 660 GLPLKAEGYEAKRYRK 675 GLPL AEG+E RYRK Sbjct: 710 GLPLAAEGFETHRYRK 725 >gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust. Identities = 275/736 (37%), Positives = 376/736 (51%), Gaps = 85/736 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F +Y +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 245 QRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G Sbjct: 305 NCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDG 424 Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 G+DIY YA +F V+K+QR IGK Sbjct: 425 TWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486 V ELALGY GG F A+ +DL+ + ++ + +W +A Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQEATELLEWTKA-------- 536 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + P F + D+ AC++ K+AWR H + W+ L C V + +I A+ Sbjct: 537 NHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 589 Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTE 599 + ++ R + + LPS R L Y+ D G SY+ T T + R TYGGKL E Sbjct: 590 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVE 649 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659 NI QA+SRD+L M GY IVLTVHDEI++E D F+ L +LM P WA+ Sbjct: 650 NITQAVSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 709 Query: 660 GLPLKAEGYEAKRYRK 675 GLPL AEG+E RYRK Sbjct: 710 GLPLAAEGFETHRYRK 725 >gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53] gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53] Length = 726 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 275/736 (37%), Positives = 373/736 (50%), Gaps = 85/736 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F EY +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 245 QRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G Sbjct: 305 NCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA---------- 403 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDG 424 Query: 404 ------------------------------NGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 G+DIY YA +F V+K+QR IGK Sbjct: 425 TWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQ 486 V ELALGY GG F A+ +DL+ + ++ + +W +A Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAAQAALPPLLLQEATELLEWTKA-------- 536 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + P F + D+ AC++ K+AWR H + W+ L C V + +I A+ Sbjct: 537 NHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 589 Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTE 599 + ++ R + + LPS R L Y+ D G SY+ T T + R TYGGKL E Sbjct: 590 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVE 649 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659 NI QA+SRD+L M GY IVLTVHDEI++E D F+ L +LM P WA+ Sbjct: 650 NITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 709 Query: 660 GLPLKAEGYEAKRYRK 675 GLPL AEG+E RYRK Sbjct: 710 GLPLAAEGFETHRYRK 725 >gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 274/729 (37%), Positives = 372/729 (51%), Gaps = 71/729 (9%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA L AYA D PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F +Y +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 245 QRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G Sbjct: 305 NCTSGDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K++AF + Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDG 424 Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 GEDIY YA +F V+K+QR IGK Sbjct: 425 TWHSGEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 V ELALGY GG F A+ +DL+ ++ E E+ + P F Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANHRPTFG 543 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + D+ AC++ K+AWR H + W+ L C V + +I A+ + + Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHTCCGITVQ 596 Query: 554 HKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAIS 606 + R + + LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+S Sbjct: 597 YSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVS 656 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RD+L M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AE Sbjct: 657 RDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAE 716 Query: 667 GYEAKRYRK 675 G+E RYRK Sbjct: 717 GFETHRYRK 725 >gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 274/730 (37%), Positives = 374/730 (51%), Gaps = 73/730 (10%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F +Y +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Sbjct: 185 SHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 245 QRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353 S DGRLRGTLQF GASRTGRW+G + QP NLPR S+ ++ I A+ G Sbjct: 305 NCTSGDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDG 424 Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 G+DIY YA +F V+K+QR IGK Sbjct: 425 TWHSGEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ-DQYPEF 492 V ELALGY GG F A+ +DL+ ++ +QA W + +Q P F Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLL--LQQAMEALQWTKANQRPTF 542 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + D+ AC++ K+AWR H + W+ L C V + +I A+ + Sbjct: 543 GLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHTCCGITV 595 Query: 553 RHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAI 605 ++ R + + LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+ Sbjct: 596 QYSRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAV 655 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665 SRD+L M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL A Sbjct: 656 SRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAA 715 Query: 666 EGYEAKRYRK 675 EG+E RYRK Sbjct: 716 EGFETHRYRK 725 >gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated bacterium] Length = 206 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 189/206 (91%), Positives = 194/206 (94%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQY Sbjct: 1 MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F E Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + ER LWLLDQ INDRGYRIDLDLV Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDLV 206 >gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 726 Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust. Identities = 273/728 (37%), Positives = 368/728 (50%), Gaps = 69/728 (9%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIAH-GVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K ++GK L+A FCK P CT R H W F EY +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLP 184 Query: 179 P--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 S E LW LDQTINDRG +D DL + + + L LT G ++++ Sbjct: 185 SHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAAT 244 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL +L G+ L DM + T++ L + + ++L+ R +S ++ K L Sbjct: 245 QRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALL 304 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETI 353 S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G Sbjct: 305 NCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVF 364 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--------- 404 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 365 DDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDG 424 Query: 405 -------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 G+DIY YA +F V+KEQR IGK Sbjct: 425 TWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGK 484 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 V ELALGY GG F A+ +DL+ ++ E E+ +Q P F Sbjct: 485 VQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANQRPTFG 543 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + D+ AC++ K+AWR H + W+ L FA G +A + ++ Sbjct: 544 LSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ--FAATDAIGHPETAHTCCGI---TVQY 597 Query: 554 HKRDVHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISR 607 + + + LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+SR Sbjct: 598 SRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSR 657 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEG 667 D+L M GY IVLTVHDE+++E D F+ L +LM P WA+GLPL AEG Sbjct: 658 DVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEG 717 Query: 668 YEAKRYRK 675 ++ RYRK Sbjct: 718 FQTHRYRK 725 >gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening disease-associated, Peptide, 207 aa] Length = 207 Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust. Identities = 188/206 (91%), Positives = 194/206 (94%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +SKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQY Sbjct: 2 VSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 61 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F E Sbjct: 62 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 121 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL Sbjct: 122 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 181 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + ER LWLLDQ INDRGYRIDLDLV Sbjct: 182 NPEERTLWLLDQEINDRGYRIDLDLV 207 >gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU] gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF] gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS] Length = 735 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 270/736 (36%), Positives = 367/736 (49%), Gaps = 69/736 (9%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRT----------EQS 51 LF+D ET S L KVG +AYAE I L +YA+DD P K+WD T + + Sbjct: 5 LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64 Query: 52 AMPSDLLQYLRDET---VMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + P DLL+ LR V V HN L F+R++ ++ LG+DIP + T V A + LP Sbjct: 65 SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP---YDCTRANHVQAWQLFGEYCK 164 SL C LN L K + GKALI RFCK + + YD R H W+ F Y + Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYD--RNTHPDEWKQFKHYAR 182 Query: 165 RDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 D+ A RE++ ++ D E ++ LDQ INDRG+ +D DL +A R +L E Sbjct: 183 NDITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQE 242 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 G + + LR L + + + TL +L +++ A+ +I RL Sbjct: 243 AAQATYGGGLTGADFLPLLRD---LAPAHHIPNAQKSTLGDLLDDADLPDEARQVIEMRL 299 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ +A K L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E+ L + Sbjct: 300 GAASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLAR 359 Query: 343 TIQALNRG--ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 I+AL RG E D + LA+ VR CII + GKKLVVAD + +E R LAW+AGED + Sbjct: 360 GIEALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALD 419 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 F G DIY T K F D V +R IGK EL LGY GG F T + + GLDL+ Sbjct: 420 TFRAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLE 479 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQ----YPEFAVKD--------KLIGTACELVKK 508 + + + T W A + +M+ Q P KD K C+ +K+ Sbjct: 480 EMAVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKR 539 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI---------SARRVANVPRLVMRRHKRD-- 557 WR H +Q W DL E + G+ +R + R + R K Sbjct: 540 MWRESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNW 599 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNT--------------ATSQLMR----ERTYGGKLTE 599 + I LPS R L Y + N +QL R + TYGGKL E Sbjct: 600 LKIELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAE 659 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659 N+ QA+ RDIL M GY+I+L+VHDE+++ETPDT ++V L LM P+WAK Sbjct: 660 NVTQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAK 719 Query: 660 GLPLKAEGYEAKRYRK 675 G PLKAEG+E RY+K Sbjct: 720 GFPLKAEGWEGYRYKK 735 >gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 712 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 264/719 (36%), Positives = 363/719 (50%), Gaps = 73/719 (10%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 S L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L Sbjct: 9 SILWGDLETYSPVPIAH-GVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAAL 67 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 68 HNPAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVE 126 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCT-----RANHVQAWQLFGEYCKRDVEATRELFKR 176 K ++GK L+A FCK P CT R H W F +Y +RDV A R++ KR Sbjct: 127 QAKAKDGKRLVALFCKPR----PTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKR 182 Query: 177 LIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L + E LW LDQTINDRG +D DL + + ++ L E LT G++++ Sbjct: 183 LPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQA 242 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + Q AL +L G+ L DM + T++ L + + ++L+ R +S ++ K Sbjct: 243 ATQRDALLHHLSTEHGVVLPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQA 302 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---E 351 L S DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G Sbjct: 303 LLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDV 362 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN------- 404 D + L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K++AF + Sbjct: 363 VFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGV 422 Query: 405 ---------------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G+DIY YA +F V+KEQR I Sbjct: 423 DGTWHSGEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQI 482 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-P 490 GKV ELALGY GG F A+ +DL+ ++ +QA W + + P Sbjct: 483 GKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLL--LQQAVEALQWTKANHRP 540 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 F + D+ AC++ K+AWR H + W+ L C V + +I A+ + Sbjct: 541 TFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHTCCGI 593 Query: 551 MRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQ 603 ++ R + + LPS R L Y+ D G SY+ T T + R TYGGKL ENI Q Sbjct: 594 TVQYSRAWLRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQ 653 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662 A+SRD+L M GY IVLTVHDEI++E D F+ L +LM P +G P Sbjct: 654 AVSRDVLAACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712 >gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407] Length = 598 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 225/589 (38%), Positives = 324/589 (55%), Gaps = 22/589 (3%) Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGE 161 G +L C L + K +EGKALI FCK +S T H + W+ F Sbjct: 15 GGSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVA 74 Query: 162 YCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 Y D+EA RE++KRL E LW DQ INDRG +D++L + + QE+K+ Sbjct: 75 YAGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKR 134 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L + ++TDG ++++ Q AL ++ G++L DM TL+ ++ ++ K+L+ Sbjct: 135 LAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLA 194 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 RL +S ++ K L + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E Sbjct: 195 IRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQ 254 Query: 340 LTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 + + I+AL G + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+ Sbjct: 255 IDEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEE 314 Query: 397 WKIKAF-----ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 WK+ AF G D+Y YAKAF+ D V K R IGKVMEL LGY GG F T Sbjct: 315 WKLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITF 374 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 A GLDL + + +A+S + + + + +++ AC+ +K+ WR Sbjct: 375 ALVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWR 433 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 H W +L C V+ + + ++ L +RR + I LPS R + Y Sbjct: 434 RAHPATCDFWYELE----CTVRTAIA-TPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYP 488 Query: 572 DV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 +G+ +Y+ N+ + + R +TYGGKL EN+ QA +RD+L M GY IVL Sbjct: 489 SPVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVL 548 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 TVHDE+++E+PDT F+ L +L++ NP WA +PL A G+EA YRK Sbjct: 549 TVHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597 >gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H] Length = 726 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 257/732 (35%), Positives = 356/732 (48%), Gaps = 63/732 (8%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDEPV++WD T S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRDVEA 169 C L S K + GKALI RF K + + Y R H W LF +Y D+ A Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKN--YKIRRYTAETHPDEWALFIKYAVSDITA 178 Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 RE+F +L + E + + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 179 MREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRK 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + LR L + + + TL +L+ ++ A+ +I RL ++ + Sbjct: 239 YGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAAST 295 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 A K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL Sbjct: 296 ASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISAL 355 Query: 348 NRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 DIY T K F D + KE+ R IGK EL LGY GG F A + GLDL Sbjct: 416 LDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDM 475 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQ-------------DQYPEFAVKDKLIGTACELVKKA 509 ++ + T W + W + D P + + DK + C+ +K+ Sbjct: 476 TKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSY-ILDKKVWRTCDAIKRM 534 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKRD------VHIV 561 WR H + W+D+ + ++ G + R R V + + + + Sbjct: 535 WRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMT 594 Query: 562 LPSSRRLVY----------SDVKGDCSY--------LNTATSQLMRERTYGGKLTENIVQ 603 LPS R + Y +D G S N T Q + TY GKL EN Q Sbjct: 595 LPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQ 654 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663 A+ RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL Sbjct: 655 ALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPL 714 Query: 664 KAEGYEAKRYRK 675 AEG E KRY K Sbjct: 715 VAEGAEMKRYAK 726 >gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G] Length = 726 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 257/732 (35%), Positives = 356/732 (48%), Gaps = 63/732 (8%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDEPV++WD T S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRDVEA 169 C L S K + GKALI RF K + + Y R H W LF +Y D+ A Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKN--YKIRRYTAETHPDEWALFIKYAVSDITA 178 Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 RE+F +L + E + + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 179 MREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRK 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + LR L + + + TL +L+ ++ A+ +I RL ++ + Sbjct: 239 YGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAAST 295 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 A K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL Sbjct: 296 ASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISAL 355 Query: 348 NRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 DIY T K F D + KE+ R IGK EL LGY GG F A + GLDL Sbjct: 416 LDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDM 475 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQ-------------DQYPEFAVKDKLIGTACELVKKA 509 ++ + T W + W + D P + + DK + C+ +K+ Sbjct: 476 AKTMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSY-ILDKKVWRTCDAIKRM 534 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKRD------VHIV 561 WR H + W+D+ + ++ G + R R V + + + + Sbjct: 535 WRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMT 594 Query: 562 LPSSRRLVY----------SDVKGDCSY--------LNTATSQLMRERTYGGKLTENIVQ 603 LPS R + Y +D G S N T Q + TY GKL EN Q Sbjct: 595 LPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQ 654 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663 A+ RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL Sbjct: 655 ALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPL 714 Query: 664 KAEGYEAKRYRK 675 AEG E KRY K Sbjct: 715 VAEGAEMKRYAK 726 >gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1] gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1] Length = 993 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 232/610 (38%), Positives = 331/610 (54%), Gaps = 24/610 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL YL D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP- 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A + + + + +K+ T C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL--NTATSQ 586 +Q G R +L +RR K + I LPS R L Y + G +Y+ N + + Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597 Query: 587 LMRERTYGGK 596 R +TYGGK Sbjct: 598 WERLKTYGGK 607 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/77 (57%), Positives = 51/77 (66%) Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ENI QA +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N WA Sbjct: 916 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 975 Query: 659 KGLPLKAEGYEAKRYRK 675 LPL A G+E RYRK Sbjct: 976 WDLPLSANGFETYRYRK 992 >gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2] gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2] gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 993 Score = 369 bits (946), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 231/610 (37%), Positives = 331/610 (54%), Gaps = 24/610 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL Y D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP- 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A S + + + + +K+ C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREATSWYQKSVETDKTYGLSEKIF-VNCDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL--NTATSQ 586 +Q G R +L +RR K + I LPS R L Y + G +Y+ N + + Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597 Query: 587 LMRERTYGGK 596 R +TYGGK Sbjct: 598 WERLKTYGGK 607 Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 44/77 (57%), Positives = 51/77 (66%) Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ENI QA +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N WA Sbjct: 916 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 975 Query: 659 KGLPLKAEGYEAKRYRK 675 LPL A G+E RYRK Sbjct: 976 WDLPLSANGFETYRYRK 992 >gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3] gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2] Length = 726 Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 256/732 (34%), Positives = 356/732 (48%), Gaps = 63/732 (8%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDE V++WD T+ S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRDVEA 169 C L S K + GKALI RF K + + Y R H W LF +Y D+ A Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKN--YKIRRYTAETHPDEWALFIKYAVSDITA 178 Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 RE+F +L + E + + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 179 MREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRK 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + LR L + + + TL +L+ ++ A+ +I RL ++ + Sbjct: 239 YGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAAST 295 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 A K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL Sbjct: 296 ASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISAL 355 Query: 348 NRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 DIY T K F D + KE+ R IGK EL LGY GG F A + GLDL Sbjct: 416 LDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDM 475 Query: 463 SQNVKSTSTFEDWEQAESHHLWM-------------QDQYPEFAVKDKLIGTACELVKKA 509 ++ + T W + W +D P + + DK + C+ +K+ Sbjct: 476 AKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSY-ILDKKVWRTCDAIKRM 534 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKRD------VHIV 561 WR H + W+D+ + ++ G + R R V + + + + Sbjct: 535 WRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMT 594 Query: 562 LPSSRRLVY----------SDVKGDCSY--------LNTATSQLMRERTYGGKLTENIVQ 603 LPS R + Y +D G S N T Q + TY GKL EN Q Sbjct: 595 LPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQ 654 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663 A+ RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL Sbjct: 655 ALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPL 714 Query: 664 KAEGYEAKRYRK 675 AEG E KRY K Sbjct: 715 VAEGAEMKRYAK 726 >gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a] gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a] Length = 763 Score = 367 bits (943), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 258/766 (33%), Positives = 367/766 (47%), Gaps = 97/766 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +LF+D ET S L KVG +AYAE I +C YA D+ V+ WD TE MP +L Sbjct: 4 FERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPRELR 63 Query: 59 QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + LR + + +A+ LF+R++ ++ GID+P + T ++A + LP SL C Sbjct: 64 KALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDMQCQ 123 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC---TRANHVQAWQLFGEYCKRDVEATR 171 L K + GKALI RFCK + + Y TR H + W F Y D+ A R Sbjct: 124 VLGVDAEHAKDKAGKALIKRFCKPTPKT--YKIRRYTRETHPEEWAKFLRYAALDIIAMR 181 Query: 172 ELFKRLIPLSD--GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E++ R+ + E ++ L+DQ INDRG+ +D+DL + + +++L E+ + Sbjct: 182 EVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERFG 241 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + + ALR L + + + TL +L + K LI RL +S +A Sbjct: 242 GKLTGNDFLPALRD---LAPAFTIHNAQKSTLNDLLEDPDFPDEGKVLIEMRLGASSTAS 298 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE----------- 338 K N L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E S++ Sbjct: 299 TKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGE 358 Query: 339 ----------ILTQTIQALNRGET--IADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 +LT I +L RG D L + VR CII + GKK VVAD + +E Sbjct: 359 SDVAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEG 418 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---KEQRAIGKVMELALGYQG 443 R LAWIAGE + F G DIY T K F + + K+ R IGK EL LGY G Sbjct: 419 RGLAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYGG 478 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------QDQYP 490 G F A + GLDL ++ +K T W A+ + + +D+ P Sbjct: 479 GVAAFLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDERP 538 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP--- 547 + + K + C+ +K+ WR H + W +L + C ++ G P Sbjct: 539 TY-ILPKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGK 597 Query: 548 ---RLVMRRHKRD----------------VHIVLPSSRRLVY--------SDVKGDCSYL 580 ++V + K D + I LPS R + Y +++ D Sbjct: 598 KALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKK 657 Query: 581 NTAT-------SQLMR----ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 T+T +Q R + TYGGKLTENIVQA+ RDIL M GY+IVL+VH Sbjct: 658 RTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVH 717 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+++E PDT ++ LC+LM P WAKG PL AEG RYRK Sbjct: 718 DELITEVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763 >gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] Length = 704 Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 241/707 (34%), Positives = 350/707 (49%), Gaps = 39/707 (5%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + L++D ET S + L +VG YAE A L AYA D P ++WD T + M +L + Sbjct: 3 APLWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTAEE-MHDELYHAM 61 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTNGLPSSLKNACLALNF 118 D AHN+ F+R + +P +RW C+ +A ++ LP L + C L Sbjct: 62 DDADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKV 121 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYD-CTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + K+ +GK L+ F + D+ TR H W+ F +Y D+ A RE +R+ Sbjct: 122 PADMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRM 181 Query: 178 IPLSDGERDL--WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + + W LDQ IN RG+++D L +E+ ++ +L+ G + Sbjct: 182 PAWNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQF-TP 240 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 Q R+YL G +L + GT + +L + +++I +AS+ ++ K L Sbjct: 241 GQREKFRVYLGQRLGYELDNTQAGTFQVMLRDPGLPADVREMIELAIASNKTSTAKYAAL 300 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGET-- 352 AVS DGR RG LQF GASRT RW+G +FQPQNLP R S E++ I+ L G Sbjct: 301 DPAVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHAL 360 Query: 353 -IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGE 406 + + L + +R C++A+ GKKLVVADL+ IE RVLAWIA E+WK+KAF G Sbjct: 361 FFDNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGP 420 Query: 407 DIY-VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF--- 462 D+Y +T + P + K + A GKV +LA GYQGG ++T A GL + F Sbjct: 421 DLYNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDT 480 Query: 463 -SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 Q V + + WE S W Q + D++ A E K AWRA+H + W Sbjct: 481 IQQMVPAQHVAKAWENLAS---WGHPQLESLEI-DEIEWVASETCKLAWRARHPATSKFW 536 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------- 574 L ++ GS+ R V R ++ + + LPS R L Y + Sbjct: 537 YALGGAAKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRD 596 Query: 575 ------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 G+ S T Q +R T+GGK+T N Q I+RDIL M A GY VL+V Sbjct: 597 ETIAYWGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSV 656 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE ++E PDT F+ L ++ NP+WA LPL A G+EA RY+K Sbjct: 657 HDEALTEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703 >gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2] Length = 579 Score = 361 bits (926), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 223/579 (38%), Positives = 318/579 (54%), Gaps = 19/579 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL Y D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP- 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A S + ++ + + +K+ T C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 +Q G R +L +RR K + I LPS R L Y Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCY 576 >gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] Length = 681 Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 233/689 (33%), Positives = 347/689 (50%), Gaps = 61/689 (8%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---LGIDIPSK 91 +A DD PV WD T + MP +L + + + +F+R++ K + +P Sbjct: 5 WAIDDGPVGTWDVTTGAPMPVELDEAIDAADEYWWQNGGMFDRVVLKHAAPEIYARMPEH 64 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRA 150 +W T V A +GLP L C N K +EG LI FCK +S TR Sbjct: 65 KWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRRATRE 124 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRL----IPLSDGERDLWLLDQTINDRGYRIDLDLV 206 H + W F Y D+ A R + K + P + E LW DQ IN RG ++D++L Sbjct: 125 THPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMDVELA 184 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 I + +K+L V+LTDG + + Q L +L +DL DM + TL+ ++ Sbjct: 185 EAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLERRIN 244 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 ++ ++L+ RL ++ ++ K TL VS+DGRLRG +QF GA RTGR + +FQ Sbjct: 245 DPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVAHRLFQ 304 Query: 327 PQNLPRQE----------------RSEEILTQTIQALNRG---ETIADPLGLASDCVRSC 367 P N+PR + +E I AL G + +GL ++ VR Sbjct: 305 PGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTANVVRGT 364 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPID 422 I+A +GK+L V+DL+ IE R AW+AGE WK++AF + G D+Y YA+AF ++ Sbjct: 365 IVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFGVAVE 424 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA-ESH 481 V K R +GKVMELAL Y+GG F T +DL V + D E E+ Sbjct: 425 AVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEIVREAR 484 Query: 482 HLWMQDQYPEFAVKDKL-------IGTACELVKKAWRAKHQGVLQLWKDLTE-GFACVVQ 533 +W E+AVK + + AC+++K+ WR H W +L + + Sbjct: 485 GMW------EWAVKKRRTLGLPQDVFIACDILKRLWRRAHPQTSSYWPELRDAAILAISS 538 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-----SDVKGDCSYL--NTATSQ 586 G ++ ARRV ++RR + + LPS R+L Y SD G+ SY+ N T + Sbjct: 539 PGKTVHARRV------ILRRDGEWLRVQLPSKRQLCYLAPRVSD-DGEISYMGVNQYTRK 591 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGK+ EN+ QA++RD+L GYDIVL++HDE+++E PD +S Sbjct: 592 WQRTKTYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADE 651 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L SL+ P+WA+G+PL A G+ A RY+K Sbjct: 652 LSSLIATAPAWAEGMPLAAAGFSAYRYKK 680 >gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3] Length = 502 Score = 345 bits (885), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 204/505 (40%), Positives = 283/505 (56%), Gaps = 19/505 (3%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL--NTATSQLMRE 590 G R +L +RR K + I LPS R L Y + G +Y+ N + + R Sbjct: 362 GIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWERL 416 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 +TYGGK+ ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L Sbjct: 417 KTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKL 476 Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ N WA LPL A G+E RYRK Sbjct: 477 LSFNSDWAWDLPLSANGFETYRYRK 501 >gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1] Length = 698 Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 241/697 (34%), Positives = 335/697 (48%), Gaps = 61/697 (8%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLR-----DETVMCVAHN-SLFERILFKKTLGID 87 AYA+DDEPV++WD T S MP DL + LR + + V HN S+F+R++ K G D Sbjct: 8 AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 IP I T + A + LP SL C L S K + GKALI RF K + + Y Sbjct: 68 IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKN--YKI 125 Query: 148 TR---ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD--LWLLDQTINDRGYRID 202 R H W LF +Y D+ A RE+F +L + E + + LDQ INDRG+++D Sbjct: 126 RRYTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVD 185 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + L E + + + +L E+ + G + LR L + + + TL Sbjct: 186 VALAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLN 242 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +L+ ++ A +I RL ++ +A K N L SSD R RG +Q+ GA RT R++G Sbjct: 243 DLLADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAG 302 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIA--DPLGLASDCVRSCIIASNGKKLVVAD 380 FQPQNL R ++ L + I AL +G D L + VRSCII G K VVAD Sbjct: 303 KGFQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVAD 362 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMEL 437 + +E R LAW+AGE+ + F G DIY T K F D + KE+ R IGK EL Sbjct: 363 YSNVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACEL 422 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------ 485 LGY GG F A + GLDL ++ + T W + W Sbjct: 423 GLGYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPG 482 Query: 486 -QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARR 542 +D P + + DK + C+ +K+ WR H + W+D+ + ++ G + R Sbjct: 483 EKDDRPSY-ILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPR 541 Query: 543 VANVPRLVMRRHKRD------VHIVLPSSRRLVY----------SDVKGDCSY------- 579 R V + + + + LPS R + Y +D G S Sbjct: 542 GVKFSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQ 601 Query: 580 -LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 N T Q + TY GKL EN QA+ RD+L + N NGY IVL VHDEI+ ETPD Sbjct: 602 GENQLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPD 661 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P ++V L LM + P WA+G PL AEG E KRY K Sbjct: 662 LPEYNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698 >gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 653 Score = 341 bits (874), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 235/708 (33%), Positives = 339/708 (47%), Gaps = 94/708 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID+ET S + VG + YAE A I L AYAWDD PV++ D T + +P+D+L L D Sbjct: 3 LSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALTD 62 Query: 64 ETVMCVAHNSLFERILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNACLALN 117 +M A N+ FER + L + + W CT V A T GLP SL L Sbjct: 63 NDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTLK 122 Query: 118 FSEHLTKMEEGKALIARFCK---------GSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 E KM G LI FCK G + P D + W F YC RDVE Sbjct: 123 LGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAP-----EKWATFKAYCVRDVE 177 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 A RE+ +RL P+ + ER LW LDQ INDRG RID L + R ++ + Sbjct: 178 AEREVRRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASA 237 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L+ + + L+ +++ G + +++ T+ ++ + ++ K ++ ++ S Sbjct: 238 LSG--LENPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAK-SETVKTMLQLKMLLSK 294 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K + +A SDGR G LQFYGA+RTGRW+G + Q QNLPR +E L Sbjct: 295 TSVKKYEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAE--LDDARAL 352 Query: 347 LNRGETIA------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G+T A +P + S +R+ I + G + VAD + IEARV+AW+AGE W++ Sbjct: 353 LRCGDTDALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMD 412 Query: 401 AFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 FA+G DIY + +K F+ P++K V+ R GKV ELALGY GG K M + Sbjct: 413 VFADGGDIYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGA----- 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL--VKKAWRAKHQG 516 DKL T EL +K++WR Sbjct: 468 -------------------------------------DKLGLTDAELEEIKQSWRKASPR 490 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------ 570 +++LW D V+E ++S + + + + I LPS R L Y Sbjct: 491 IVRLWSDFESAALEAVRERSTVSLQH-----GIKLECRSGILFIRLPSGRSLAYVKPRIE 545 Query: 571 ---SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 S + +Y ++RTYGG+L EN +QAI+RD L M GY IV+ Sbjct: 546 YEESFDREGLTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMH 605 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +HDE+V ETP + + +C +M+K WA GL L A+GY Y+K Sbjct: 606 IHDEVVVETPRS-VDCLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652 >gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26] gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55] gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34] gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79] gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291] gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58] gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291] Length = 652 Score = 339 bits (870), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 244/709 (34%), Positives = 351/709 (49%), Gaps = 92/709 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + A I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRDVE 168 +E KM+EGKALI FCK P T+ N ++ W F EYCK+DV Sbjct: 121 NEDKQKMKEGKALIQYFCK------PCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVV 174 Query: 169 ATRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE+ +L ER+ LW LDQ IND G ++D +L+ E + +KL ++ +K Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +T + + L+ +L G ++ +++ ++ IL + + + L L +L S Sbjct: 235 ITG--LNNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKLMSK- 291 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++I K + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + Sbjct: 292 TSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNL-- 349 Query: 347 LNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G E + D + + S +R+ I S G + +V+D + IEARV+AW AGE W++ Sbjct: 350 LKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLD 409 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM-ASHCGL 457 F + IY + + F PI+ + K R GK+ ELALGY G +M A GL Sbjct: 410 VFNSHGKIYEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIKMGL 469 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 D ++ V +T+ + + W D+ + A+KD+ I VK Sbjct: 470 DEEELQPLV---TTWRNANPNITKFWWDVDKAAKKAIKDRTI------VK---------- 510 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------- 570 L G + G + I LPS RRL Y Sbjct: 511 ------LQHGIKFIYNPGV---------------------LFIELPSGRRLSYLRPKIEP 543 Query: 571 -SDVKGD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + GD +Y + + Q R TYG KL ENIVQA +RD L E M N T GY IV+ Sbjct: 544 HTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVM 603 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE+V + D S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 604 HVHDELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932] gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196] gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196] Length = 652 Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 237/709 (33%), Positives = 350/709 (49%), Gaps = 92/709 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + A I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRDVE 168 +E KM+EGKALI FCK P T+ N ++ W F EYCK+DV Sbjct: 121 NEDKQKMKEGKALIQYFCK------PCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVV 174 Query: 169 ATRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE+ +L ER+ LW LDQ IND G ++D +L+ E + +KL ++ +K Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +T + + L+ +L G ++ +++ ++ IL + + + L L +L S Sbjct: 235 ITG--LNNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKLMSK- 291 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++I K + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + Sbjct: 292 TSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNL-- 349 Query: 347 LNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G E + D + + S +R+ I S G + +V+D + IEARV+AW+AGE W++ Sbjct: 350 LKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLD 409 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F + IY + ++ F PI+ + K E R GK+ EL+ GY G +M Sbjct: 410 VFNSHGKIYEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMG------ 463 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+K L + + AWR + + Sbjct: 464 ----------------------------------AIKMGLKEEELQPIVTAWRNANPNIT 489 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVY------- 570 + W D+ + +++ R + + + + V I LPSSRRL Y Sbjct: 490 KFWWDVDKAAKKAIKD------RTIVEIQHGIKFIYNPGVLFIELPSSRRLSYLRPKIEP 543 Query: 571 -SDVKGD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + GD +Y + + Q R TYG KL ENIVQA +RD L E M N T GY IV+ Sbjct: 544 HTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVM 603 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE+V + D S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 604 HVHDELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255] Length = 652 Score = 336 bits (861), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 236/709 (33%), Positives = 349/709 (49%), Gaps = 92/709 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + A I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRDVE 168 +E KM+EGKALI FCK P T+ N ++ W F EYCK+DV Sbjct: 121 NEDKQKMKEGKALIQYFCK------PCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVV 174 Query: 169 ATRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE+ +L ER+ LW LDQ IND G ++D +L+ E + +KL ++ +K Sbjct: 175 VEREIRNKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIK 234 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +T + + L+ +L ++ +++ ++ IL + + + L L +L S Sbjct: 235 ITG--LNNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDENVVRTLELRKLMSK- 291 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++I K + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + Sbjct: 292 TSIKKYEAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNL-- 349 Query: 347 LNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G E + D + + S +R+ I S G + +V+D + IEARV+AW+AGE W++ Sbjct: 350 LKEGDFDLIELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLD 409 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F + IY + ++ F PI+ + K E R GK+ EL+ GY G +M Sbjct: 410 VFNSHGKIYEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMG------ 463 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+K L + + AWR + + Sbjct: 464 ----------------------------------AIKMGLKEEELQPIVTAWRNANPNIT 489 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVY------- 570 + W D+ + +++ R + + + + V I LPSSRRL Y Sbjct: 490 KFWWDVDKAAKKAIKD------RTIVEIQHGIKFIYNPGVLFIELPSSRRLSYLRPKIEP 543 Query: 571 -SDVKGD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + GD +Y + + Q R TYG KL ENIVQA +RD L E M N T GY IV+ Sbjct: 544 HTTFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVM 603 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE+V + D S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 604 HVHDELVIDV-DKKGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 591 Score = 327 bits (837), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 206/564 (36%), Positives = 297/564 (52%), Gaps = 15/564 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A DEPV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P RW T V A +GLP +L C L + Sbjct: 64 PDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKGSI-DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + +TDG ++++ Q Sbjct: 184 YKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K +L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRMADPDLPSAVKELLAIRLQASTTSTSKYKSLMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 SSDGRLRGTLQF GASRTGRW+G +FQPQNLPR ++ + + I+AL G + Sbjct: 304 SSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CI+A GKKLVV+DL+ IE R LAW+AGE WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN D V K QR IGKVMEL LG+ GG F T A GLDL + + Sbjct: 424 AYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A++ + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKNWYDESVKRKATYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRAA 542 Query: 532 VQEGGSISARRVA-NVPRLVMRRH 554 + + R++ + PR M H Sbjct: 543 IATPTKDAVLRLSESPPRWCMAAH 566 >gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 645 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 231/711 (32%), Positives = 348/711 (48%), Gaps = 103/711 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY + I L AYA+D + VK+ D +P++++ Sbjct: 1 MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L +E ++ A N+ FERI + L + + W CT+V A T G P SL L Sbjct: 61 EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRDVE 168 +E KM+EGK LI F S P TR N + W F +YC RDVE Sbjct: 121 TEQ--KMKEGKELIRYF------SIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 R + K+L P+S+ E+ ++LD INDRG +DLDLV + E ++ + + Sbjct: 173 VERAIRKKLSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQR 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL------ILN 280 LT + + L+ +L + G LS ++ LAK+ +LN Sbjct: 233 LTG--LDNPNSVAQLKQWL----------IENGVEVDSLSKKAVSDLAKEADGEVERLLN 280 Query: 281 -RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 RL + ++I K + AV D R+RG LQFYGA+RTGRW+G + Q QNLP+ + Sbjct: 281 LRLQLAKTSIKKYEAIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLT 340 Query: 340 LTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 L + + +T+A + S+ +R+ I + + +VAD + IEARV+AW+AGE Sbjct: 341 LARNLVKSGDFDTLALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGE 400 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS 453 W++ FA IY + ++ F PI++++K R GK+ ELALGY G M + Sbjct: 401 KWRMDVFATHGKIYEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMGA 460 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ +D+L G AWR Sbjct: 461 ---LDMG--------------------------------VAEDELQGLVT-----AWRQA 480 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + +LW D+ + V++ ++ V ++ ++ + I LPS RRL Y Sbjct: 481 NPNITKLWWDIDKAAIKAVKKKTTVM------VGKIKLQYESGIMFITLPSGRRLSYIKP 534 Query: 574 KGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + + + AT + R TYG KL ENIVQAI+RD+L E M +NGY+I Sbjct: 535 RIEPNKFERDAVTYEGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEI 594 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ +HDEIV E P + S+ +C +M P+WA+ LPL+A+G+E + YRK Sbjct: 595 VMHIHDEIVIEAP-LNFGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644 >gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4] Length = 649 Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 241/710 (33%), Positives = 348/710 (49%), Gaps = 97/710 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY+E A I L AYA DDE V++ D +P+++L Sbjct: 1 MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + D TV+ A+N+ FER K I +P ++W CTSV A GLP L L Sbjct: 61 KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSI-------DSPPYDCTRANHVQAWQLFGEYCKRDVE 168 KM+EGKALI F CK + + P +D R W F +YCK+DVE Sbjct: 121 QGQ--KMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPAR------WDTFKDYCKQDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE+ K+L PL E++LW LDQ IND G ID +LV + + +L E+ V+ Sbjct: 173 VEREIRKKLEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEAVR 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + L+ +L L G+++ +++ +++++S ++ + L L R A S Sbjct: 233 LTG--LENPNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVENPEVKRLLELRR-AMSK 288 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR------QERSEEIL 340 +++ K + +V SD R+RG LQFYGASRTGRW+G + Q NLPR Q E + Sbjct: 289 TSVKKYEAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLE 348 Query: 341 TQTIQALN-RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + +AL E+++D L S +R+ I S G + VVAD + IEARV+AW+AGE W++ Sbjct: 349 SGKYEALEVLFESVSDVL---SQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRM 405 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F + IY + A+ F PI+ + K R GK+ ELALGY G M + G Sbjct: 406 DVFQSHGKIYEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMGALEMG 465 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L +D+ PE AWR + Sbjct: 466 L---------------------------TEDELPELV--------------SAWREANPK 484 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--- 573 +++LW + V+E + + L K + I LPS R L Y Sbjct: 485 IVKLWWGIEAAAIKAVKEKAVVKMQH-----GLTFHYTKGILFITLPSGRSLAYVRPKIG 539 Query: 574 ------KGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 K +Y T + Q R TYGGKLTENI+QAI+RD L M + GY I Sbjct: 540 IDERFGKEQLTYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRIN 599 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ + P S+ + ++M ++ WA GLPL A+ +E Y+K Sbjct: 600 FHVHDEVILDVP-IATGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648 >gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 651 Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 239/705 (33%), Positives = 333/705 (47%), Gaps = 93/705 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP VGV+ YA E I L AYA D V++ D +P D+L Sbjct: 9 MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V+ A N+ FER+ LG + + W C+ V A G+P L AL+ Sbjct: 69 DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 KM EGK LI F S P T+AN + W+ F YCKRDVE Sbjct: 129 ETE--KMGEGKNLIRYF------SLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVE 180 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + KRL +P+ E D + DQ INDRG RID DL + R E + + Sbjct: 181 VELAITKRLHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRE 240 Query: 227 LTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 LT R ++ +L + G+ + +++ + + L + +A+ L L R + Sbjct: 241 LT----RVDNPASVTQLLAWLRSQGLQIDSLAKADVAAALEGALEGDVAEVLAL-RQEMA 295 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 S++ K + DGR G LQF GA RTGRW+G + Q QNLPRQ S+ + Sbjct: 296 KSSVKKYERMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLV 355 Query: 346 ALNRGETIADPLGLA----SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + + G A S+ +R+ +A G + +VAD + IEAR +AW+AGE W + Sbjct: 356 RTGHADMLETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDL 415 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSK-EQRAIGKVMELALGYQGGAKVFKTMASH-CGLDL 459 F G DIY T + F ++K S QRA KV LA GYQGG KTM GL Sbjct: 416 FEAGGDIYCETGTRMFRQVVEKHSPLRQRA--KVAVLACGYQGGVGALKTMGGEKLGLSE 473 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + V AWRA + + Q Sbjct: 474 DEMADIV-----------------------------------------AAWRAANPKIAQ 492 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCS 578 LW D+ V+++GG+ + V R+ + K + I LPS R LVY + G+ Sbjct: 493 LWWDINAAAIAVIKDGGARA------VGRIRLAHDKGALIITLPSGRPLVYPSPRIGENR 546 Query: 579 YLNTATSQL--------MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + + + + R TYGGKLTENIVQA +RDIL + ++GY +V+ +HD Sbjct: 547 FGGESITHMGVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHD 606 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V+E P+ SV LC+LM++ P WA GLPL AEG+E+ YRK Sbjct: 607 EVVTEVPEG-RGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650 >gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 651 Score = 317 bits (811), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 222/697 (31%), Positives = 348/697 (49%), Gaps = 76/697 (10%) Query: 8 IETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 +ET S L GV+ Y +E I L AYA DDEPVK+ D +PS++L + + Sbjct: 1 METYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPA 60 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 ++ AHN++FER+ + LG + + +W C+ + A GLP+SLK+ L SE KM Sbjct: 61 IIKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKM 120 Query: 126 EEGKALIARFCK----GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 GK LI+ FCK ++ T A+ + WQLF +YC RDVE RE+ +L P Sbjct: 121 RIGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFP 180 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E +LW DQ +ND G RID+++V + + ++L + ++T+GI ++ Sbjct: 181 IPASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGI--GPKKIA 238 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ ++ + + + + +L S+I+ + ++ R S ++I K + +V Sbjct: 239 QLKEWICRKEDRSIESLDKDAVIELLKDSSISPETRRVLQIRQESGKTSITKYAAIQRSV 298 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG- 358 +D RL G LQFYGA+RTGRW+G +FQPQNLPR ++ L + + E++ G Sbjct: 299 CNDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYGS 358 Query: 359 ---LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 + S +R+ +I NG +AD + IEAR+ AW E+W+ + FA IY + A+ Sbjct: 359 YNQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAAQ 418 Query: 416 AFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 F+ PI+ V+K + R GKV ELALGY GG + M G D+ S++ Sbjct: 419 MFHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMG---GADM-GLSEDE------- 467 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 MQD +V K WR + ++W + + V+ Sbjct: 468 -----------MQD-----------------IVNK-WRLASPNIKKMWYRVQDAAYTAVR 498 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------GD-CSYLNTATSQ 586 E +RV+ V + + LPS RRL Y K GD +Y + Q Sbjct: 499 E-----RKRVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQ 553 Query: 587 -------LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-D 638 R++T+GGKL EN++QAI+RD L + M GY I++ +HDE+V E P + Sbjct: 554 DGKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVPSE 613 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T + + +M + WA GL L A+G+ ++ YRK Sbjct: 614 TAESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650 >gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] Length = 655 Score = 316 bits (810), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 231/712 (32%), Positives = 342/712 (48%), Gaps = 95/712 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L ID+ET S + G + Y E I L AYA++DEPV++ D T+ A+P ++ Sbjct: 1 MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 L D V+ A N+ FER K + + P +W CT + A T GLPSSL AL Sbjct: 61 DALYDPDVIKTAFNANFERSAIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKALK 120 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRDVEATREL 173 E KM+EGKALI FCK + D N ++ W+ F EYCKRDVE RE+ Sbjct: 121 LEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVEREI 180 Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L E+ LW LDQ INDRG DL L+ + E ++L + +KLT Sbjct: 181 RNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG-- 238 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSGSA 288 + + ++ ++ G ++ +++ ++ ++ + N +++ K L L +L + ++ Sbjct: 239 LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLELRQLMAK-TS 297 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 I K +T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + L + Sbjct: 298 IKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPD--LDNARNFVR 355 Query: 349 RG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 G +++ D L S +R+ I G + +V+D + IEARV+AW AGE W++ Sbjct: 356 EGKFEEVEFLFDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 F+ IY + ++ F PI+ + K E R GK+ ELALGY G +M + Sbjct: 413 DVFSTHGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSI 472 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ VKS WR + + Sbjct: 473 PEEELPGLVKS-----------------------------------------WRNANPNI 491 Query: 518 LQLWKDLTEGFACVVQEGGSISAR---RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + W D+ + ++E +++ + + P ++ I LPS R+L Y K Sbjct: 492 TKFWWDVDKAAKKAIRERTTVNLQYGLKFIYDPGVLF--------IQLPSGRKLSYIRPK 543 Query: 575 --------GD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 GD +Y + + Q R TYG KL ENIVQA SRD L E M K GYD Sbjct: 544 IEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYD 603 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV+ VHDE+V + P +V + LM + WA GLPLKA+GYE Y K Sbjct: 604 IVMHVHDEVVLDIPKD-RATVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654 >gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] Length = 658 Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 231/714 (32%), Positives = 342/714 (47%), Gaps = 106/714 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L ID+ET S + G + Y E I L AYA++DEPV++ D +PS++ L Sbjct: 8 LSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVFYAL 67 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D ++ A N+ FER K P ++W CT V A T GLPSSL AL F E Sbjct: 68 TDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKFEED 127 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVEATR 171 KM+EGKALI FCK P T+ N ++ W+ F EYCKRDVE R Sbjct: 128 KQKMKEGKALIQYFCK------PCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 181 Query: 172 ELFKRLIPLSDG--ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+ L E+ LW LDQ INDRG DL L+ + E ++L + ++LT Sbjct: 182 EIRNLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTG 241 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSG 286 + + ++ ++ G ++ +++ ++ ++ + N +++ K L L +L + Sbjct: 242 --LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLELRQLMAK- 298 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE--------- 337 ++I K +T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + Sbjct: 299 TSIKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVR 358 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 E Q ++ L +++ D L S +R+ I G + +V+D + IEARV+AW AGE W Sbjct: 359 EGKFQEVEFL--FDSVPDTL---SQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQW 413 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++ F+ IY + ++ F I+ + K E R GK+ ELALGY G +M Sbjct: 414 RLDVFSTHGKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKK 473 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + ++ VKS WR + Sbjct: 474 SIPEEELPGLVKS-----------------------------------------WRNANP 492 Query: 516 GVLQLWKDLTEGFACVVQEGGSISAR---RVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + W D+ + V++E +++ + + P ++ I LPS R+L Y Sbjct: 493 NITKFWWDVDKAAKKVIRERTTVNLQYGLKFIYDPGVLF--------IQLPSGRKLSYIR 544 Query: 573 VK--------GD-CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 K GD +Y + + Q R TYG KL ENIVQA SRD L E M K G Sbjct: 545 PKIEPHETFSGDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAG 604 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 YDIV+ VHDE+V + P +V + LM + WA GLPLKA+GYE Y+K Sbjct: 605 YDIVMHVHDEVVLDIPKD-RATVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657 >gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] Length = 649 Score = 312 bits (799), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 228/703 (32%), Positives = 339/703 (48%), Gaps = 83/703 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L GV+ Y A I L YAWDD+PV+L D +P ++ Sbjct: 1 MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + V+ A N+ FERI K L + + W CT++ A GLP L AL Sbjct: 61 NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELF 174 + K GK LI F CK + + +H + WQ F +YC RDVE RE+ Sbjct: 121 K--VQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ P+ + E LWLLDQ IND G +D+ LV + + Q +L+ + LT + Sbjct: 179 RKIERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAKTLTK--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +S+ ++++L+ ++ ++ + L L R + S+I K Sbjct: 237 DNPNSVAQLKEWL-KEQGLEVESLSKQAVQNLLTDAD-GEIERLLTL-RQEMAKSSIAKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +V D R+RG QFYGA+RTGRW+G +FQ QNLP+ + + + + R + Sbjct: 294 AAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKE 353 Query: 353 I-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + + P+ L S+ +R+ +I G + +VAD + IEARVLAW+A E W + F Sbjct: 354 LELLYESVPIVL-SELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGK 412 Query: 408 IYVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 IY T ++ F P++K++K E RA GKV LA GYQGG K M Sbjct: 413 IYEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMG---------- 462 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A K L T + + +AWR+ +Q +++ W Sbjct: 463 ------------------------------ADKMGLSDTELDDIVRAWRSANQRIVRFWY 492 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------SDVKGD 576 D+ + V+E R V L + + I LPS RRL Y D++ D Sbjct: 493 DVEKAAVLAVRE------REPQRVGILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFD 546 Query: 577 CSYLNTA----TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 L Q R++TYGG+L ENIVQ +RD L E M GY IV VHDEI Sbjct: 547 KDGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEI 606 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++E S+ LC +M + WA GLPL+A+G+E Y+K Sbjct: 607 ITEMRKGQ-GSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648 >gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK72] Length = 643 Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 227/705 (32%), Positives = 340/705 (48%), Gaps = 93/705 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + I L AY D+ ++ D + +P ++L Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+ ++ A N+ FER+ K LG + +K W CT+VLA + GLP SL+ LN Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 E KM+EG LI FC P T+AN ++ W+LF YCKRDVE Sbjct: 121 EEQ--KMKEGSRLIRYFCL------PCKATKANGMRERNFPHHAPEDWELFKSYCKRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + + RL PL + E+ + LDQ INDRG +D LV + ++++ + + Sbjct: 173 VEQAIRVRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYE 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L+ + + L+ +L G+ + + + + L ++ L +++ RL S Sbjct: 233 LSG--LENPNSVSQLKGWLEE-QGVFMDSLGKKEVAKHLKEADGEVL--EMLKLRLLMSK 287 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K + V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + L +T+ Sbjct: 288 TSVKKYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVK 347 Query: 347 LNRGETIADPL-----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + ET+ D L G+ S+ +R+ + G + +VAD A IEARVLAW++GE W+++ Sbjct: 348 EGQFETL-DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEV 406 Query: 402 FANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 F G DIY + + F P++K + R GK+ ELALGY G M + LD+ Sbjct: 407 FEQGGDIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGA---LDM 463 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 E+ E L Q WR+ + ++ Sbjct: 464 --------------GLEEEELQPLVNQ-----------------------WRSANPHIVA 486 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV------ 573 W ++ + V + R + LV+ + I LPS R+L Y Sbjct: 487 FWWEIDKVAKQVYE------TREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNA 540 Query: 574 --KGDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 K +Y S + R TYG KL ENIVQ I+RD+L GM + G IVL VHD Sbjct: 541 FGKPGLTYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHD 600 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E V E + SV +C L+ P WA+GLPL+A+GY + Y+K Sbjct: 601 EAVVEVREE---SVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK1057] Length = 643 Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 227/705 (32%), Positives = 340/705 (48%), Gaps = 93/705 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + I L AY D+ ++ D + +P ++L Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+ ++ A N+ FER+ K LG + +K W CT+VLA + GLP SL+ LN Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 E KM+EG LI FC P T+AN ++ W+LF YCKRDVE Sbjct: 121 EEQ--KMKEGSRLIRYFCL------PCKATKANGMRERNFPHHAPEDWELFKSYCKRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + + RL PL + E+ + LDQ INDRG +D LV + ++++ + + Sbjct: 173 VEQAIRVRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYE 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L+ + + L+ +L G+ + + + + L ++ L +++ RL S Sbjct: 233 LSG--LENPNSVSQLKGWLEE-QGVFMDSLGKKEVAKHLKEADGEVL--EMLKLRLLMSK 287 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K + V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + L +T+ Sbjct: 288 TSVKKYQAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVK 347 Query: 347 LNRGETIADPL-----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + ET+ D L G+ S+ +R+ + G + +VAD A IEARVLAW++GE W+++ Sbjct: 348 EGQVETL-DTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEV 406 Query: 402 FANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 F G DIY + + F P++K + R GK+ ELALGY G M + LD+ Sbjct: 407 FEQGGDIYCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMGA---LDM 463 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 E+ E L Q WR+ + ++ Sbjct: 464 --------------GLEEEELQPLVNQ-----------------------WRSANPHIVA 486 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV------ 573 W ++ + V + R + LV+ + I LPS R+L Y Sbjct: 487 FWWEIDKVAKQVYE------TREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNA 540 Query: 574 --KGDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 K +Y S + R TYG KL ENIVQ I+RD+L GM + G IVL VHD Sbjct: 541 FGKPGLTYEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHD 600 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E V E + SV +C L+ P WA+GLPL+A+GY + Y+K Sbjct: 601 EAVVEVREE---SVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 567 Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 213/571 (37%), Positives = 287/571 (50%), Gaps = 58/571 (10%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL + Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + L LT G ++++ Q AL +L G+ L DM + T++ L + + Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242 Query: 391 WIAGEDWKIKAFAN----------------------------------------GEDIYV 410 W+AGE K+ AF + G+DIY Sbjct: 243 WLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 YA +F V+KEQR IGKV ELALGY GG F A+ +DL+ ++ Sbjct: 303 RAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPP 362 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 E E+ +Q P F + D+ AC++ K+AWR H + W+ L FA Sbjct: 363 LLLQ-EAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ--FAA 418 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNTA--T 584 G +A + ++ + + + LPS R L Y+ D G SY+ T T Sbjct: 419 TDAIGHPETAHTCCGI---TVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPIT 475 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYGGKL ENI QA+SRD+L M GY IVLTVHDE+++E D F+ Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNA 535 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +LM P WA+GLPL AEG++ RYRK Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] Length = 646 Score = 309 bits (792), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 216/702 (30%), Positives = 346/702 (49%), Gaps = 91/702 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L K GV+AYA+ + L AY++D ++ D + +P ++ + Sbjct: 5 LEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAAI 64 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D+ VM A N+ FER K G + + W C++V A LP SL+ L + Sbjct: 65 FDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQQ 124 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVEATR 171 KM+EGK LI FC P T+AN H + W+LF YC RDV+ + Sbjct: 125 --KMKEGKDLIRYFCM------PCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEK 176 Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+ ++L P+ + E +L+ LDQ INDRG +D +LV + + + + +LT Sbjct: 177 EIRRKLQHFPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTG 236 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + ++ +L G+++ +S+ T+ ++ S+ ++L+ RL + +++ Sbjct: 237 --LENPNSVAQIKSWLGE-NGVEMESLSKKTVAGLIEESDGE--VQELLRLRLLMAKTSV 291 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K + +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + + + R Sbjct: 292 KKYEAMERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGR 351 Query: 350 GETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 E + + P + S+ +R+ I G + VVAD + IEARVLAW++GE W+++ FA+ Sbjct: 352 FEDVELLYDSTP-NVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFAS 410 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 IY + + F+ PI++V+K R GK+ ELALGY G +M + LD+ Sbjct: 411 HGKIYEASASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMGA---LDMGLV 467 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + + AWR+ + + Q W Sbjct: 468 EEELAPLVS-------------------------------------AWRSANPHITQFWW 490 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------K 574 D+ A V+ +++ ++ R+V + + LPS R+L Y + Sbjct: 491 DVD---AAAVK---AVTEKKKTRAGRIVFEYKSGILFVELPSGRKLSYVKPRMALNKFGR 544 Query: 575 GDCSYLNTATSQLM-RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +Y A ++ R TYG KL ENIVQ +RD+L E M + GY IV+ HDEI+ Sbjct: 545 NGLTYEGIAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEII 604 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +E P+ SV +C++M P WA GLPL+A+GYE Y+K Sbjct: 605 AEVPEGT-GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645 >gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] Length = 650 Score = 309 bits (792), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 231/714 (32%), Positives = 330/714 (46%), Gaps = 104/714 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L IDIET S L K GV+AYAE I L YA+DDEPV+L D +P ++L Sbjct: 1 MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D ++ A N+ FER K +P ++W CT V A T GLP L + L Sbjct: 61 NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSI-------DSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + K GKALI F CK + + P +D R W F YCK+DV Sbjct: 121 KQQ--KDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDR------WAKFKSYCKQDVA 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 R++ K L P+ + E LW LDQ IND G +D LV Q + KL K Sbjct: 173 VERDIRKTLERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAK 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + + L+ +L G+++ +++ ++ +L + + K ++ R + Sbjct: 233 LTG--LDNPKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTE-SSTVKQMLELRQEMAK 289 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K + A DGR+RG LQFYGA+RTGRW+G + Q QNLPR S + L Q Q Sbjct: 290 TSVKKYLAMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRN--SIKDLDQARQL 347 Query: 347 LNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 L G E++ L S +R+ + G + +VAD + IEARV+AW+A E W Sbjct: 348 LKAGDYEMLELLFESVPTVL---SQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKW 404 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHC 455 ++ F IY + + F+ PI++++K R GKV ELALGYQGG M Sbjct: 405 RMDVFRTHGKIYEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG--- 461 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 A+K+ L + K WR Sbjct: 462 -------------------------------------ALKEGLTEEELPGLVKLWRQSSP 484 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY----- 570 +++ W D V+E ++ + + I LPS RRL Y Sbjct: 485 NIVKFWYDTEAAAIKAVKEKTTVELHHGIH-----FIYESGILFIRLPSGRRLAYIKPRI 539 Query: 571 -SDVKGDCSYLN-----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 ++ + D L T Q R TYGGKL ENIVQA++RD L E + GY Sbjct: 540 QNNPRLDKPALTYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKT 599 Query: 625 VLTVHDEIVSETPDTPYFSVGTL---CSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ VHDE V E P VG+L C +M + WA GLP++A+G+E+ Y+K Sbjct: 600 VMHVHDESVMEMP----HGVGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649 >gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] Length = 648 Score = 309 bits (791), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 234/707 (33%), Positives = 340/707 (48%), Gaps = 92/707 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E + I L AYA+D+EP+K+ D + A+P ++L Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K +P +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 SE K +EGKALI F S P T+AN + W+ F YC +DVE Sbjct: 121 SEQ--KDKEGKALIRYF------SVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVE 172 Query: 169 ATRELFKRLI---PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 R + R+ PL E++LW LDQ INDRG RID DLV Q + L + Sbjct: 173 VERSIKNRISKFEPLK-AEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAK 231 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +LT + + T L+ +L G+ + +++ ++ ++ ++ + + L L R + Sbjct: 232 ELTG--LPNPNSTAQLKKWL-EDKGLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMA 287 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 +++ K + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++ +T+ Sbjct: 288 KTSVKKYLAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLL 347 Query: 346 ALNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 E I G + S VR+ I S G + V+D + IEARV+AW+AGE W++ Sbjct: 348 KGGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDV 407 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLD 458 F IY + A+ F P++ ++K R GKV ELALGYQGG M + GLD Sbjct: 408 FNTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLD 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +D+ P KAWR ++ ++ Sbjct: 468 ---------------------------EDELPGLV--------------KAWRTANKKIV 486 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC- 577 Q W D+ V+E + + L + + LPS RRL Y+ K + Sbjct: 487 QFWYDVEAAAVKAVKERKPVKIQH-----GLTFLCESGILFVQLPSGRRLAYAKPKLEID 541 Query: 578 --------SYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 +Y S + R TYGGKL ENIVQA++RD L + GY V+ V Sbjct: 542 DRFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHV 601 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE V + P + + S+M + WAKGLPL A+G+ Y+K Sbjct: 602 HDETVLDVPRGKN-ELDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] Length = 567 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 214/571 (37%), Positives = 286/571 (50%), Gaps = 58/571 (10%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL + Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + L LT G ++++ Q AL +L G+ L DM + T++ L + + Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242 Query: 391 WIAGEDWKIKAFAN----------------------------------------GEDIYV 410 W+AGE K+ AF + G+DIY Sbjct: 243 WLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 YA +F V+K+QR IGKV ELALGY GG F A+ +DL+ ++ Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPP 362 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 E E+ +Q P F + D+ AC++ K+AWR H + WK L FA Sbjct: 363 LLLQ-EAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQ--FAA 418 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--AT 584 +A + M+ + + + LPS R L Y+ D G SY+ T T Sbjct: 419 TDAIRHPETAHTCCGI---TMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMT 475 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F+ Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNA 535 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +LM P WA+GLPL AEG++ RYRK Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens LL3] Length = 648 Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 231/706 (32%), Positives = 338/706 (47%), Gaps = 90/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E I L AYA+D+EP+K+ D + A+P +++ Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K +P +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 SE K +EGKALI F S P T+AN + W+ F YC +DVE Sbjct: 121 SEQ--KDKEGKALIRYF------SVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 R + R+ L E++LW LDQ INDRG RID DLV Q + L + + Sbjct: 173 VERSIKNRISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKE 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + T L+ +L G+ + +++ ++ ++ ++ + + L L R + Sbjct: 233 LTG--LPNPNSTAQLKTWL-EDKGLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAK 288 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++ +T+ Sbjct: 289 TSVKKYLAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLK 348 Query: 347 LNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E I G + S VR+ I S G + V+D + IEARV+AW+AGE W++ F Sbjct: 349 GGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVF 408 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDL 459 IY + A+ F P++ ++K R GKV ELALGYQGG M + GLD Sbjct: 409 NTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALTMGLD- 467 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +D+ P KAWR ++ ++Q Sbjct: 468 --------------------------EDELPGLV--------------KAWRTANKKIVQ 487 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC-- 577 W D+ V+E + + L + + LPS RRL Y+ K + Sbjct: 488 FWYDVEAAAVKAVKERKPVKIQH-----GLTFLCESGILFVQLPSGRRLAYAKPKLEIDD 542 Query: 578 -------SYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y S + R TYGGKL ENIVQA++RD L + GY V+ VH Sbjct: 543 RFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVH 602 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE V + P + + ++M + WAKGLPL A+G+ Y+K Sbjct: 603 DEAVLDVPRGKN-ELDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK115] Length = 645 Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 232/717 (32%), Positives = 339/717 (47%), Gaps = 115/717 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + Q I L AY D+E ++ D + +P +L Sbjct: 1 MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 LRD+ V+ A N+ FER+ K L + ++ W CT+V A + GLP SL+ LN Sbjct: 61 SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 E KM+EG+ LI FC + +I + + +H ++ W+LF YCKRDVE + + Sbjct: 121 EEQ--KMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL PL + E+ L+ LDQ INDRG +D QEL++Q L D Sbjct: 179 KRLSNYPLLESEQLLYQLDQAINDRGIAVD-------QELVSQ---------AILGD--- 219 Query: 233 RSSRQTYALRMYLFLITGIDLVDM---------SEGTLKSILSHSNITQLAKDL---ILN 280 S ++ R Y ++G+D + ++G L ++ + K++ IL Sbjct: 220 LSYKEQVTQRAYE--LSGLDNPNSVSQLKGWLENQGVFMDSLGKKDVAKQLKEVDGEILE 277 Query: 281 ----RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 RL S +++ K + V SD R+ G LQFYGA+RTGRW+G + Q QNLP+ + Sbjct: 278 MLKLRLLMSKTSVKKYQAMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLK 337 Query: 337 EEILTQTIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 + L +T+ + G+ A L + S+ +R+ + +G + +VAD A IEARVLA Sbjct: 338 DLDLARTL--VKDGQLKALDLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLA 395 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448 W++GE W+++ F G DIY + A F P++K V+ R GK+ ELALGY G Sbjct: 396 WLSGETWRLEVFEQGGDIYCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 455 Query: 449 KTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 K M + GLD ++ V Sbjct: 456 KAMGALDMGLDEEELQPLVNQ--------------------------------------- 476 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 WR + ++ W + + V + R V L++ I LPS R+ Sbjct: 477 --WRMANPHIVAFWWVIDKASKEVYE------TREPQKVGNLLLYYQAGMFFIALPSGRK 528 Query: 568 LVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 L Y + + + + R TYG KL ENIVQ I+RD+L GM Sbjct: 529 LAYVKPRMELNAFGKPGLTYEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQ 588 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 K DIVL VHDE V E + SV +C L P WA+GLPL+A+GY + Y+K Sbjct: 589 KQELDIVLHVHDEAVVEVKEGEA-SVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644 >gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 231/716 (32%), Positives = 338/716 (47%), Gaps = 105/716 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LF+D+ET SP L K GV+ YAE + L Y+ D PVK+ D +P++++ Sbjct: 1 MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS----------KRWICTSVLARTNGLPSS 108 + L D V A N+ FER+ L P +W CT V + GLP S Sbjct: 61 EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLF 159 L+ L+ + K GK LI RFC +G + + P A+ W+ F Sbjct: 121 LEQVATVLDLP--VRKDSAGKKLITRFCTPARPSVLNQGEMRNLP-----ASDPDGWEQF 173 Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 Y +RDVE + RL P+ + E + LDQ IND G R+D LV + Q R Sbjct: 174 ISYNRRDVEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHR 233 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +LT + + L+ +L G L +++ + + L + T +++ Sbjct: 234 ATTLARAQELTG--LENPNSPIQLKDWL-TAHGTPLQSLTKDEVAAALDTA--TGEVREV 288 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ---- 333 + R + S++ K T+ DGR RG LQFYGA RTGR++G + Q QNLPR Sbjct: 289 LQLRGELAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD 348 Query: 334 --ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 E + + T +A+ +++ D L S +R+ + ++G + VVAD + IEARV+A Sbjct: 349 LCEARDLVRTGEFEAVELLYDSVPDTL---SQLIRTAFVPADGHRFVVADFSAIEARVIA 405 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448 W+AGE ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG Sbjct: 406 WLAGEATTLQAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGAL 465 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K M A++ L + + + Sbjct: 466 KAMG----------------------------------------ALRMGLAESELQPLVD 485 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 AWRA + V+QLW D+ A ++ +IS R+ V L + + LPS RRL Sbjct: 486 AWRAANPNVVQLWADIN---AAAIE---AISTRQPTGVGALTFTVESGIMFVRLPSGRRL 539 Query: 569 VYSDVK-GDCSYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K G+ + TA + + + TYGGKLTENIVQA++RD+L GM + Sbjct: 540 AYVKPKLGENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDR 599 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IV+ VHDEIV ET +V +C LM P WA GLPL A+GY Y K Sbjct: 600 AGYRIVMHVHDEIVVETATA---TVDEICELMATAPDWAAGLPLAADGYACDFYMK 652 >gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 567 Score = 307 bits (787), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 213/571 (37%), Positives = 286/571 (50%), Gaps = 58/571 (10%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL + Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + L LT G ++++ Q AL +L G+ L DM + T++ L + + Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242 Query: 391 WIAGEDWKIKAFAN----------------------------------------GEDIYV 410 W+AGE K+ AF + G+DIY Sbjct: 243 WLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 YA +F V+K+QR IGKV ELALGY GG F A+ +DL+ ++ Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPP 362 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 E E+ +Q P F + D+ AC++ K+AWR H + WK L FA Sbjct: 363 LLLQ-EAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQ--FAA 418 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--AT 584 +A + M+ + + + LPS R L Y+ D G SY+ T T Sbjct: 419 TDAIRHPETAHTCCGI---TMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMT 475 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYGGKL ENI QA+SRD+L M GY IVLTVHDE+++E D F+ Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNA 535 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +LM P WA+GLPL AEG++ RYRK Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] Length = 661 Score = 307 bits (786), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 222/711 (31%), Positives = 343/711 (48%), Gaps = 96/711 (13%) Query: 6 IDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPS----DLLQ 59 +DIET S + + GV+AYA I L Y +D + VK+ D T+ A P D + Sbjct: 5 VDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPDFWE 64 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L V+ A+N+ FER LG +P ++W CT+V A T GLP +L AL Sbjct: 65 GLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEALGLP 124 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDV-- 167 E K + GK+LI FCK P T+ N +++ WQLF EY ++DV Sbjct: 125 EDKQKDKIGKSLIQYFCK------PCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVA 178 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 EAT ++ P++ E++LW LDQ IND G R+D+DL K+ + +++L ++ KL Sbjct: 179 EATIREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKL 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN------R 281 T + + L+M+ F+ G+D+ +++ ++ I + + D++ R Sbjct: 239 TG--LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGLRMLQIR 296 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 +++ K + AV DG LRG LQFYGA+RTGRW+G + Q NLP+ + + L Sbjct: 297 KELGKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLA 356 Query: 342 QTIQALNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 + + +T+ P + S +R+ I S G + VV+D + IEARV+AW+A E Sbjct: 357 RDLVKQEDFDTLELLFEGIPF-VFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEK 415 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASH 454 W++ F IY + A+ F+ PI+ + K R GKV ELALGY GG K M Sbjct: 416 WRLNVFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAM--- 472 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 T D D+ P ++ WR Sbjct: 473 ------------DKAGTIPD------------DEIP--------------MIIANWRKAS 494 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV- 573 + +LW++ ++E +I + L R + I LPS R+L Y D Sbjct: 495 PNICKLWRNAEAAARAAIEERRTIKLKH-----GLSFSYINRILFIGLPSGRKLAYYDTR 549 Query: 574 -------KGDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 K +Y ++ T + R +T+GGKL ENIVQA +RD L M+ + GY I Sbjct: 550 IEDDEKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQI 609 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ VHDEI+ + P+T ++ + ++M + WA+ LPL+ +GYE Y+K Sbjct: 610 VMHVHDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660 >gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 655 Score = 306 bits (785), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 230/704 (32%), Positives = 342/704 (48%), Gaps = 87/704 (12%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 S L IDIET S L + GV+AYAE I L AYA+DDE V + D + +P+ +L+ Sbjct: 8 SVLSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLK 67 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D ++M A+N+ FER L +P+++W C+SV A T GLP L LN Sbjct: 68 ALIDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLG 127 Query: 120 EHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175 + K GKALI F CK + + H ++ W + YC++DVE R L K Sbjct: 128 DQ--KDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRK 185 Query: 176 RLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 RL P+ + E+ LW LDQ +ND G RID DLV + +L A+E+ L E+ ++T + Sbjct: 186 RLASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITG--LE 243 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + LR +L GI+ +++ + +L + + LIL ++ S +++ K Sbjct: 244 NPNSVAQLRDWL-TSRGIETSGLAKKQVSDLLQTDLPGDVRRVLILRQMMSK-TSVKKYE 301 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--E 351 + ++ DG +RG LQFYGA+RTGRW+G + Q NLP+ + L + Q + G E Sbjct: 302 AMDRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGD--LDEARQLVKTGNYE 359 Query: 352 TIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 I G L S R+ I G + VV+D + IEARV+AW+AGE W++K F Sbjct: 360 LITTLYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGK 419 Query: 408 IYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 IY + ++ F PI++++K R GK+ ELALGY GGAK T + L Sbjct: 420 IYEASASQMFGVPIEEITKASPLRQKGKIAELALGY-GGAKGALTQMGALEMGLS----- 473 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 +D+ P KAWR + ++ LW DL Sbjct: 474 --------------------EDELPALV--------------KAWRKANPNIVNLWYDLE 499 Query: 526 EGFACVVQEGGSISAR---RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------- 573 + V+ ++A+ + L+ R LPS R L Y Sbjct: 500 KSAFEAVKWQKVVTAKSGIQFYGGSGLLRAR--------LPSGRSLSYVRPQIGIDERFG 551 Query: 574 KGDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + + +Y + + Q R TYGGK+ EN+VQAI+RD L E M GY I VHDE Sbjct: 552 REEITYEGVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDE 611 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V E P+ + + +M++ WA GLP+ A+ +E Y+K Sbjct: 612 VVIEVPNE-QDAKADIERIMSEPIDWAPGLPMNADSFETGYYKK 654 >gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 650 Score = 306 bits (784), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 230/713 (32%), Positives = 337/713 (47%), Gaps = 102/713 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET + KVG + Y E I L AYA++DEPV++ D + +P + Sbjct: 1 MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L + ++ A N+ FE KK L I ++ W CT V + GLP SL L F Sbjct: 61 TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVE 168 E KM+EGKALI FCK P T++N H + W++F +Y K+DVE Sbjct: 121 EEDKQKMKEGKALIQYFCK------PCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVE 174 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 R + +L P ++ E+ LW LDQ INDRG D++L+ K E K+L ++ + Sbjct: 175 VERAIRNKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATE 234 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT G+ + T L+ ++ G ++ +++ ++ +++ S ++ K L L +L + Sbjct: 235 LT-GLSNPNSPT-QLKRWIGERVGHEVKSLTKDSIPTLIKESKDEKVKKILELRQLMAK- 291 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++I K T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + L Sbjct: 292 TSIKKYETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPD--LDDARNF 349 Query: 347 LNRGE---------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + G+ +I D L S +R+ I G + +VAD + IEARV+AW AGE W Sbjct: 350 IRTGQFDKVEFLYDSIPDTL---SQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQW 406 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 ++ F N DIY + +K F P++K ++ R GK+ ELALGY G +M Sbjct: 407 RLDVFNNNGDIYCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKK 466 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + VK DW A H W D+ KKA R Sbjct: 467 NIPEDELPGLVK------DWRDASPHITKFWWDVDK----------------AAKKAIRE 504 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + VLQ G + G + I LPS R+L Y Sbjct: 505 RTTVVLQF------GLKFIYDPGV---------------------LFIQLPSGRKLAYIR 537 Query: 573 VKGD--------CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 K + +Y L + Q TYG K+ ENIVQA +RD L M+ G+ Sbjct: 538 PKIEPGPYDKPIITYEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGF 597 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV+ VHDE++ + P +V +C + + WA GLPLKA+GYE Y K Sbjct: 598 HIVMHVHDELICDVPKGK-GTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649 >gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] Length = 643 Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 223/701 (31%), Positives = 341/701 (48%), Gaps = 85/701 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M KL ID+ET S L K GV+ YAE I L AY+ +D VK+ D +P ++L Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DE V A N+ FER+ + LG + + W CT + + GLP SL+ L Sbjct: 61 SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + KM EGKALI F CK + + ++H ++ W F EY +RDVE + Sbjct: 121 DKQ--KMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRID---LDLVLKLQELIAQERKKLDEDIVKLTD 229 K+L P+S E + + +DQ INDRG ID +D +K ++ +E + ++LT Sbjct: 179 KKLSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENM---DRAIELTG 235 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L+ +L G+++ +++ ++S L N K+++ R S S++ Sbjct: 236 --LENPNSPLQLKEWLNK-KGLEIDSLAKKDVESALK--NTEGDIKEVLELRQELSKSSV 290 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K + + D R RG +QFYGA+RTGR+SG + Q QNL R + L +++ Sbjct: 291 RKYDAMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRD 350 Query: 350 GETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 ET+ P + S +R+ IA G + +++D + IEARVLAW+AGE W + AF NG Sbjct: 351 YETMEILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENG 410 Query: 406 EDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 EDIY T ++ F P++K V+ R GK+ LA GYQG K M G+++ Sbjct: 411 EDIYCRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMG---GIEMGLSE 467 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 ++S + +WR + ++ LW D Sbjct: 468 DELQS-------------------------------------IVDSWREANPNIVSLWWD 490 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + VV+ R LV+ K + I LPS RRL Y K + Sbjct: 491 IDSVVKRVVK------TRTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGE 544 Query: 584 T---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + ++ + +YGGK ENIVQAI+RDIL E M K G++IV+ +HDE+V Sbjct: 545 SIVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVI 604 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+ + + + SL+ PSWA GL L A+G+E++ Y+K Sbjct: 605 ESDSSSIEEINQIMSLV---PSWAPGLILDADGFESEFYKK 642 >gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] Length = 644 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 226/700 (32%), Positives = 345/700 (49%), Gaps = 82/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D PV++ D +P ++ Sbjct: 1 MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q + D V A N+ FERI K GI + W CT V + GLP SL+ A + Sbjct: 61 QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTGA 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELF 174 + K+ +GK LI F CK ++ + H + W F Y RDVE + Sbjct: 121 DKK--KLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+ + E + ++LDQ INDRG ++DL+LV K + + R++L + +LTD + Sbjct: 179 EKLQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + ++ +L G++ + + ++K++L + L++ L L +L + S++ K Sbjct: 237 DNPNSVVQMKSWLSE-KGLETDSLDKASVKALLKEAP-EHLSEVLELRQLLAK-SSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG-- 350 + AV +DGR RG LQFYGA+RTGR++G + Q QNLP+ S+ L Q + + G Sbjct: 294 TAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSD--LEQARRLVRGGHF 351 Query: 351 ---ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E + D + G+ S+ +R+ + G K +VAD + IEARV+AW+AGE W+ + FA Sbjct: 352 DALEILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY + ++ F P+++V+K R GK+ ELALGY G K M + LD+ + Sbjct: 412 KIYEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMGA---LDMGLTEE 468 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 +K + AWR + +++LW D+ Sbjct: 469 ELKP-------------------------------------LVYAWRNANPNIVRLWWDV 491 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT-- 582 V E R+ R M + I LPS R+L Y + + + Sbjct: 492 DRAVKEAVTERCRTETHRIRFEYRSGM------LLIWLPSGRQLTYVKPRMGINSFGSEA 545 Query: 583 -------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 AT + R +YG K ENIVQAISRD+LC M+N ++G +IV+ VHDE+V E Sbjct: 546 VTYEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLE 605 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P V +C LM + P WA GL L+A+G+E Y+K Sbjct: 606 VPLE--ICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643 >gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 655 Score = 303 bits (775), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 231/711 (32%), Positives = 336/711 (47%), Gaps = 93/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIE+ SP L K GV+ YAE + L Y+ D PVK+ D +MP ++L Sbjct: 1 MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 L D +V+ AHN+ FER+ L + ++W CT + + GLP SL Sbjct: 61 AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKR 165 L + K GK LI +FC + S R N A W F +Y +R Sbjct: 121 DAVAAVLKLD--VQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 179 DVEVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLAR 238 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 KLT + + L+ +L + G +L +++ + + L + T + K+++ R Sbjct: 239 AQKLTG--LDNLNSPIQLKQWL-VTRGCELESLAKAEVDAALDTA--TGVVKEVLELRGD 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR-------QERS 336 + S++ K + +DGR RG +QFYGA RTGR++G + Q QNLPR Q RS Sbjct: 294 LAKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARS 353 Query: 337 EEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 + T + AL E++ D L S +R+ I S G + +VAD + IEARV+AW+AGE Sbjct: 354 L-VQTGNLDALELLYESVPDTL---SQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGE 409 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + AF G+D+Y T ++ F+ P++K ++ E R GK+ LA GY G K M + Sbjct: 410 TTTLAAFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMGA 469 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 F+ + H L + + AWR Sbjct: 470 --------FTMGLA------------EHEL--------------------KPIVDAWRQA 489 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + ++QLW D+ + +IS+R+ + L + I LPS RRL Y Sbjct: 490 NPHIVQLWADVEQAAIA------AISSRQPIRLRNLRFSVESGILFIELPSGRRLAYVQP 543 Query: 574 K-GDCSYLNTATSQLMRE--------RTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + G+ + T+ + TYGGKL ENIVQAI+RD+L GM K G+ I Sbjct: 544 RLGENRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRI 603 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ VHDEIV + P F+V C LM+ P+WA+GLPL A+GYE YRK Sbjct: 604 VMHVHDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654 >gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] Length = 653 Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 232/716 (32%), Positives = 334/716 (46%), Gaps = 105/716 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LFIDIET SP L GV+ YA+ + L Y+ D PV++ D +P +L Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS----------KRWICTSVLARTNGLPSS 108 L D V+ A N+ FERI L P +W CT V + GLP S Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCK---------GSIDSPPYDCTRANHVQAWQLF 159 L L+ + K GK LI +FC G + +PP A+ W+ F Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPP-----ASDPDGWEQF 173 Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 Y +RDVE + RL PL E D + LDQ +ND G R+D LV Q R Sbjct: 174 ISYNRRDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHR 233 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +LT + + L+ +L G L +++ + + L + T +++ Sbjct: 234 ATTLARAQELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTA--TGQVREV 288 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ---- 333 +L R + S++ K + DGR RG LQFYGA RTGR++G + Q QNLPR Sbjct: 289 LLLRGELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD 348 Query: 334 --ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 E + T +A+ +++ D L S +R+ I ++G + VVAD + IEARV+A Sbjct: 349 LAEARSLVRTGDFEAVELLYDSVPDTL---SQLIRTAFIPADGHRFVVADFSAIEARVIA 405 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448 W+AGE ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG Sbjct: 406 WLAGETTTLEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGAL 465 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K M A++ L + + + Sbjct: 466 KAMG----------------------------------------ALRMGLAESELQPLVD 485 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 AWRA + V+QLW D+ A ++ +IS R+ +V L + I LPS RRL Sbjct: 486 AWRAANPSVVQLWADIN---AAAIE---TISTRQPTSVGALTFTVESGIMFIRLPSGRRL 539 Query: 569 VYSDVK-GDCSYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K G+ + T+ + + + TYGGKLTENIVQA++RD+L M + Sbjct: 540 AYVKPKLGENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAE 599 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G+ IV+ VHDEIV ET +V +C LM+ P WA GLPL+A+GY Y K Sbjct: 600 AGHRIVMHVHDEIVVETATA---TVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652 >gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 234/716 (32%), Positives = 331/716 (46%), Gaps = 105/716 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LFIDIET SP L GV+ YA+ + L Y+ D PV++ D +P +L Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS----------KRWICTSVLARTNGLPSS 108 L D V+ A N+ FERI L P +W CT V + GLP S Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCK---------GSIDSPPYDCTRANHVQAWQLF 159 L L+ + K GK LI +FC G + +PP A+ W+ F Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPP-----ASDPDGWEQF 173 Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 Y +RDVE + RL PL E D + LDQ +ND G R+D LV Q R Sbjct: 174 ISYNRRDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHR 233 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +LT + + L+ +L G L +++ + + L + T +++ Sbjct: 234 ATTLARAQELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALDTA--TGQVREV 288 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ---- 333 +L R + S++ K + DGR RG LQFYGA RTGR++G + Q QNLPR Sbjct: 289 LLLRGELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPD 348 Query: 334 --ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 E + T A+ +++ D L S +R+ I ++G + VVAD + IEARV+A Sbjct: 349 LAEARSLVRTGNYDAVELLYDSVPDTL---SQLIRTAFIPADGHRFVVADFSAIEARVIA 405 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448 W+AGE ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG Sbjct: 406 WLAGEATTLEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGAL 465 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K M A++ L + + + Sbjct: 466 KAMG----------------------------------------ALRMGLAESELQPLVD 485 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 AWRA + V+QLW D+ A ++ +IS R +V L + I LPS RRL Sbjct: 486 AWRAANPNVVQLWADIN---AAAIE---AISTRLPTSVGALTFTVESGIMFIRLPSGRRL 539 Query: 569 VYSDVK-GDCSYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K G+ + TA + + + TYGGKLTENIVQA++RD+L GM + Sbjct: 540 AYVKPKLGENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDR 599 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G+ IV+ VHDEIV ET +V +C LM P WA GLPL A+GY Y K Sbjct: 600 AGHRIVMHVHDEIVVETATA---TVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652 >gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 655 Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 232/712 (32%), Positives = 333/712 (46%), Gaps = 95/712 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIET SP L K GV+ Y E + L +Y+ D PV++ D +MP ++L Sbjct: 1 MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL----------GIDIPSKRWICTSVLARTNGLPSS 108 L D V+ AHN+ FER+ L G P ++W CT V + GLP S Sbjct: 61 AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDP-RQWRCTMVWSAYLGLPMS 119 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCK 164 L L + K G+ LI +FC + S N A W F +Y + Sbjct: 120 LDAIAAVLKLD--VQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNR 177 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 178 RDVEVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLA 237 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 KLT + + L+ +L G +L +++ + S L + T K+++ R Sbjct: 238 RAQKLTG--LDNPNSPIQLKQWL-ATRGCELESLAKAEVDSALDTA--TGAVKEVLELRG 292 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR-------QER 335 + S++ K + SDGR RG +QFYGA RTGR++G + Q QNLPR Q R Sbjct: 293 DLAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQAR 352 Query: 336 SEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + + T + AL E++ D L S +R+ I S G + +VAD + IEARV+AW+AG Sbjct: 353 TL-VRTGNLDALELLYESVPDTL---SQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAG 408 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMA 452 E ++AF G+D+Y T ++ F P++K V+ E R GK+ LA GY G K M Sbjct: 409 ETSTLEAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG 468 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + L++ +K + AWR Sbjct: 469 A---LNMGLAEHELKP-------------------------------------IVDAWRQ 488 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + ++ LW D+ E +IS+R+ + L I LPS RRL Y Sbjct: 489 ANPHIVGLWADVEEAAIA------AISSRQPIRLRNLRFSVESGIFFIELPSGRRLAYVQ 542 Query: 573 VK-GDCSYLNTATSQLMRE--------RTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 + G+ + T+ + TYGGKL ENIVQAI+RD+L GM K G+ Sbjct: 543 PRLGENRWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQ 602 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV+ VHDEIV + P+ F+V C+LM+ P+WA+GLPL A+GYE YRK Sbjct: 603 IVMHVHDEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] Length = 662 Score = 301 bits (772), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 235/725 (32%), Positives = 341/725 (47%), Gaps = 114/725 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ Y I L Y+ D PVK+ D +P D+L Sbjct: 1 MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL-----GID---------------IPSKRWICTSV 98 L D+TV+ A N+ FER+ + L G+D + + W C+ V Sbjct: 61 DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA--- 155 A T GLP SLK L ++ KM+EGKALI F S P T+AN + Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQ--KMDEGKALIKYF------SVPCAPTKANGGRTRNL 172 Query: 156 -------WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206 W F +Y +RDVE + ++L P+ D D + +DQ INDRG RID+DLV Sbjct: 173 PSDDPGKWATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLV 232 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 K ++ + R +L E + +T+ + + ++ +L G+++ + + + ++L Sbjct: 233 EKAIDMDTRSRSELTEKMQAITN--LENPNSVQQMKQWLS-DNGMEVDSLGKKAVTALLK 289 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + +L + L L R + S++ K T+ AV SD R RG FYGA+RTGRW+G + Q Sbjct: 290 TAP-PELTEVLEL-RQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQ 347 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLA 382 QNLP+ + + + E + D S +R+ I +G + VAD + Sbjct: 348 LQNLPQNHLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFS 407 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALG 440 IEARV+AW AGE WK AFANGEDIY +T + F+ P+ K V+ E RA GK+ ELA G Sbjct: 408 AIEARVIAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACG 467 Query: 441 YQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y G K M + GL +D+ P+ Sbjct: 468 YGGSTGALKAMGALEMGLS---------------------------EDELPD-------- 492 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 + +WR +Q +++ W D+ + V+ + + RL + Sbjct: 493 ------IVSSWRDANQQIVKFWWDVDKAVMAAVKN------HKTTRLGRLAFFWQAGMLF 540 Query: 560 IVLPSSRRLVYSDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDIL 610 I LPS R L Y K G+C +Y T + R +YG K ENIVQA SRDIL Sbjct: 541 ITLPSGRNLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDIL 600 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 C MK D+ + +HDE+V E P S+ TLC M + P+WA GL L+A+GY Sbjct: 601 CNSMKMLRH--CDVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRADGYVC 656 Query: 671 KRYRK 675 Y+K Sbjct: 657 DFYKK 661 >gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] Length = 644 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 218/710 (30%), Positives = 342/710 (48%), Gaps = 102/710 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP K+ D MP +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D++V+ A N+ FER + G+ + + W CT+V A LP SL+ ALN Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 + KM EGK LI FC P T+AN + W+LF YC RDV+ Sbjct: 121 DKK--KMSEGKDLIRYFCM------PCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVD 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 +++ +L P+ D E++L+ +DQ INDRG +D +L+ + L + K + Sbjct: 173 VEKQIRNKLAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYE 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL--SHSNITQLAKDLILNR 281 I L + L+ +L GI++ +++ ++ ++ + ++++ K R Sbjct: 233 ISGLEN-----PNSVSQLKDWLNE-KGIEVDSLAKAAVEELVEKTEGEVSEMMK----LR 282 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L+ S +++ K + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L Sbjct: 283 LSMSKTSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELA 342 Query: 342 QTIQALNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++I R + + + P L S+ +R+ +A G + +V+D + IEARV+ ++AGE Sbjct: 343 RSIVKEGRYDLVELLYDSTPEVL-SELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEG 401 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASH 454 W ++ F IY T +K F+ PI++++K RA GKV LA Y G +M + Sbjct: 402 WVMEEFRGAGKIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGAL 461 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 F +++L G ++WR + Sbjct: 462 ------------------------------------NFVEEEELKGLV-----QSWRTAN 480 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 ++ W ++ V+E R++ V R+ + + I LPS R L Y + Sbjct: 481 PHIVNYWYEIDGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPR 534 Query: 575 --------GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 SY T+ + R +YG K ENIVQA +RD+L E M K G+DIV Sbjct: 535 MTVNRFGSESVSYEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIV 594 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +HDE+V E P+ SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 595 CHIHDEVVLEVPEGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2] gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2] Length = 648 Score = 301 bits (770), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 233/709 (32%), Positives = 340/709 (47%), Gaps = 96/709 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E I L AYA+DD+PVK+ D + +P ++L Sbjct: 1 MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K + + +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 S K + GKALI F S P T+AN + W+ F YC +DVE Sbjct: 121 SAQ--KDKAGKALIRYF------SVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVE 172 Query: 169 ATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 R + R+ + E LW LDQ INDRG RID+DLV Q + L + K Sbjct: 173 VERAIKNRISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKK 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + T L+ +L G+ + +++ ++ ++ ++N + + L L R + Sbjct: 233 LTG--LPNPNSTAQLKKWLEE-KGLTISSLAKDKIEELIENTNDETVHRVLRL-RQEMAK 288 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP Q + E++ T + Sbjct: 289 TSVKKYLAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLP-QNKIEDL--DTARN 345 Query: 347 LNRG---ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 L +G E I G + S VR+ I S G + V+D + IEARV+AW+AGE+W++ Sbjct: 346 LLKGGHYEAIELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRL 405 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 + F IY + A+ F P++ ++K R GKV ELALGYQGG M + + G Sbjct: 406 EVFNTHGKIYEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMGALNMG 465 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L + + PE KAWR ++ Sbjct: 466 L---------------------------AEGELPELV--------------KAWRTANKK 484 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 +++ W D+ V+E + + L + + LPS RRL Y+ K + Sbjct: 485 IVKFWYDVEAAAIKAVKERKPVKLQH-----GLTFLYESGILFVQLPSGRRLAYAKPKLE 539 Query: 577 ---------CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 +Y S + R TYGGKL ENIVQA +RD L + GY V+ Sbjct: 540 LDERFGKEALTYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVM 599 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE V + P + + ++M + SWAKGLPL A+G+ Y+K Sbjct: 600 HVHDEAVLDVPRGKN-ELDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647 >gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82] Length = 975 Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 178/447 (39%), Positives = 255/447 (57%), Gaps = 13/447 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ R +S ++ K L + V Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMKGV 304 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 364 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 365 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 424 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELA 438 YAKA+ +++V+K+QR IGKV+ELA Sbjct: 425 AYAKAYGIEVERVTKDQRQIGKVLELA 451 Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 11/249 (4%) Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPE 491 G ++ GY GG F T A LDL + + + +A+S + + Sbjct: 732 GHLIVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKST 791 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + + +++ AC+ +K+ WR H W +L + + ++ L + Sbjct: 792 YGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTAIA-----TPQKTLYCGYLKI 845 Query: 552 RRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAIS 606 RR + I LPS R + Y KG+ +Y+ N+ + + R +TYGGKL EN+ QA + Sbjct: 846 RRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAA 905 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RD+L M GY IVLTVHDEI+SE PD+P +S + L+ P WA +PL A Sbjct: 906 RDVLAGNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAG 965 Query: 667 GYEAKRYRK 675 G+E+ RYRK Sbjct: 966 GFESYRYRK 974 >gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] Length = 644 Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 217/710 (30%), Positives = 342/710 (48%), Gaps = 102/710 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP ++ D MP +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D++V+ A N+ FER + G+ + + W CT+V A LP SL+ ALN Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 + KM EGK LI FC P T+AN + W+LF YC RDV+ Sbjct: 121 DKK--KMSEGKDLIRYFCM------PCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVD 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 +++ +L P+ D E++L+ +DQ INDRG +D +L+ + L + K + Sbjct: 173 VEKQIRNKLAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYE 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL--SHSNITQLAKDLILNR 281 I L + L+ +L GI++ +++ ++ ++ + I+++ K R Sbjct: 233 ISGLEN-----PNSVSQLKEWLNE-KGIEVDSLAKAAVEELVEKTEGEISEMMK----LR 282 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L+ S +++ K + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L Sbjct: 283 LSMSKTSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELA 342 Query: 342 QTIQALNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++I R + + + P + S+ +R+ +A G + +V+D + IEARV+ ++AGE Sbjct: 343 RSIVKEGRYDLVELLYDSTP-DVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEG 401 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASH 454 W ++ F IY T +K F+ PI++++K RA GKV LA Y G +M + Sbjct: 402 WVMEEFRGAGKIYEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGAL 461 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 F +++L G ++WR + Sbjct: 462 ------------------------------------NFVEEEELKGLV-----QSWRTAN 480 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 ++ W ++ V+E R++ V R+ + + I LPS R L Y + Sbjct: 481 PHIVNYWYEIDGAVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPR 534 Query: 575 --------GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 SY T+ + R +YG K ENIVQA +RD+L E M K G+DIV Sbjct: 535 MTVNRFGSESVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIV 594 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +HDE+V E P+ SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 595 CHIHDEVVLEVPEGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 649 Score = 300 bits (767), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 227/710 (31%), Positives = 332/710 (46%), Gaps = 97/710 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L Y+ D VK+ D +P +++ Sbjct: 1 MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D++V+ A N+ FERI K LG+ + K W CT + A T GLP SL+ Sbjct: 61 NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCK 164 L F + K+ +GK LI FC P T++N ++ W++F Y K Sbjct: 121 VLGFKKQ--KLSQGKNLIKYFC------IPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNK 172 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + +L P+S E + LDQ IND G +D+D V ++ I+ + K E Sbjct: 173 RDVETEMAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFV---RQAISCDEKFKAE 229 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +I K + + + A L G+ +S+ + +L S+ I +L Sbjct: 230 NIKKAKELTGLENPNSPAQLKDWLLKQGMKTDSLSKAVVSELLQDSDGEIHEALSIRQQL 289 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 A S ++ K ++ V SD R RG +QFYGA+RTGR+SG + Q QNLP+ + L Q Sbjct: 290 AKS--SVKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPD--LKQ 345 Query: 343 TIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 + G A L + S+ +R+ I G + +VAD + IEARV+AW+AGE Sbjct: 346 ARSLVKSGNFTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGER 405 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 W+I FA G DIY + ++ FN P+ K ++ R GK+ ELALGY G K M Sbjct: 406 WRIDVFAGGGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMG-- 463 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 A++ L+ + + AWR + Sbjct: 464 --------------------------------------AIQMGLVEDELKPIVDAWRNSN 485 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDV 573 + LW + VV+ I + + + I LPS RRL Y + Sbjct: 486 PNITSLWWRIDRAVKTVVKTKQPIEIYGIG------IFYQSGILFIKLPSGRRLAYVKPL 539 Query: 574 KGDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 G+ + + T + R +YG K ENIVQAISRDIL E M + + IV Sbjct: 540 IGENRFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIV 599 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + VHDE+V E P+ SV +C +M++ P+WAKGL L A+GYE + Y+K Sbjct: 600 MHVHDEVVIEAPNK-VSSVEEICRIMSETPAWAKGLILNADGYECEFYKK 648 >gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] Length = 640 Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 236/721 (32%), Positives = 340/721 (47%), Gaps = 128/721 (17%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLP+SL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRD 166 ++ K GK LI F S P T+AN + WQ+F YC +D Sbjct: 119 KLAQE--KDAAGKNLIKYF------SVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQD 170 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 V + ++L +P+ D E D ++ DQ INDRG +D +LV + + L ++ Sbjct: 171 VVVEMAIAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGEL 230 Query: 225 VKLTDGIIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKD 276 LT +SR L+ + + G+ D+ +EG LK +L Sbjct: 231 KALTGLDNPNSRAQLLPWLKEHGYSANGLTKADVEQELKKAEGELKRVLEL--------- 281 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ--- 333 +L ++ S++ K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R Sbjct: 282 ----KLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIK 337 Query: 334 ---ERSEEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVL 389 + E + + I A+ E + D L VR+ ++A +G V+D + IEARV+ Sbjct: 338 DLDDAREYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVI 394 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 AW AGE W++ F+ IY + ++ F PI+++ KE R GK+ ELALGYQGG K Sbjct: 395 AWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALK 454 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 M + + VK +++L G V Sbjct: 455 QMGA--------LNMGVK---------------------------EEELQG-----VVDD 474 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR ++ ++Q WKD+ A + +I +R + ++ R K + I LPS R L Sbjct: 475 WRRANKKIVQFWKDVQR--AAI----KAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLA 528 Query: 570 YSDVK---------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 Y+ K GD +Y + TYGGKL ENIVQA +RDIL E + Sbjct: 529 YARAKVEPGDYGDKIIYEGQGDRAYFTA-------QETYGGKLVENIVQATARDILAEAL 581 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 GYD+V VHDE + E + + LM++ P WA+GLPL +EGY K Y Sbjct: 582 LRIEAAGYDVVFHVHDEAIIEGSG---LIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYM 638 Query: 675 K 675 K Sbjct: 639 K 639 >gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes L99] Length = 644 Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 220/701 (31%), Positives = 332/701 (47%), Gaps = 92/701 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S + + G +AY +E I L AYA+DDEPVK+ D T +P +L+ L Sbjct: 6 LRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLT-IDEIPDTVLEDL 64 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + V+ AHN+ FER K +P ++W CT V GLP+SL AL ++ Sbjct: 65 NNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLAQE 124 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVEATR 171 K EGKALI FC P T+AN H + W F EYC++DV R Sbjct: 125 --KDNEGKALIRYFCM------PCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVER 176 Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + K++ P + E+ W LDQ I D+G RID+DLV + QER + + K Sbjct: 177 SIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVK--HAIACQERYQ--ASLSKKAK 232 Query: 230 GI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G+ + + L+ +L + G + +++ ++ +L+ ++ + ++++L R S + Sbjct: 233 GLTGLENPNSVQQLKDWLADM-GYPVSSLNKDSVSELLADEDLDEDVREMLLLRQEMSKT 291 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 +I K + A DGR+RG LQF GA+RTGRW+G + Q QNLPR + + + + L Sbjct: 292 SIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKD--IAEVRKDL 349 Query: 348 NRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 G+ A + + S +R+ IA +G + D + IEARV+AW+AGE W++ Sbjct: 350 KAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDV 409 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F + IY + ++ F+ PI++V K R GKV ELALGY GG M Sbjct: 410 FNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMG--------- 460 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ L + + AWR + LW Sbjct: 461 -------------------------------ALEMGLKENELQGIVDAWRKASPAITSLW 489 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------- 574 + + + +IS R+ L + I LPS R L Y K Sbjct: 490 RGVEKHAKL------AISTRKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYG 543 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 Y ++ TYGGKL ENIVQAI+RD L ++ G D V+ VHDE ++ Sbjct: 544 PQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAIT 603 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E ++ SV L +++ + SWA GLPL+ +G+ + Y K Sbjct: 604 EVQESES-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643 >gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1] Length = 658 Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 233/716 (32%), Positives = 336/716 (46%), Gaps = 100/716 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + ID+ETRS + + K GV+AYA+ ITL + + DD V+L+D +P D+L Sbjct: 1 MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKK------------------TLGIDIPSKRWICTSVLA 100 L DE+V+ A N FER+ + T+G + W CT + Sbjct: 61 TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC--KGSIDSPPYDCTRANHVQAWQL 158 RT GL S+L +A AL + KM EGKALI FC ++D P + A+ + W+ Sbjct: 121 RTLGLSSTLASAGAALKLEQQ--KMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWET 178 Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 F Y K+DVEA + +RL P+ D + + LDQ INDRG R+D++LV L AQ Sbjct: 179 FKAYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQA 238 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L ++ +LT I + Y L +L G + + +K +L + K Sbjct: 239 KATLSSEMRRLTG--IENPNSVYQLLEWLGE-QGYKSDCLDKAAVKELLK--TVKDPVKS 293 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ RL S S++ K + A SD R RG FYGASRTGRW+G + Q QNLP+ Sbjct: 294 VLELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIP 353 Query: 337 EEILTQTIQALNRGET------IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 + LT+ + G D S +R+ + G K ++AD + IEARV+A Sbjct: 354 D--LTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIA 411 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448 W+AGE W++ AFANG DIY + +K F P+ K V+ E R GKV ELA GY G Sbjct: 412 WLAGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAM 471 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K M G L +K T DW A + + K T + VKK Sbjct: 472 KAMG---GDALNLSDSELKQIVT--DWRDASPNIV-------------KFWWTVDDAVKK 513 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 A I + L + + I LPS R+L Sbjct: 514 A----------------------------IKQKITTETHGLQFSYQSKMLFITLPSGRKL 545 Query: 569 VYSDVK--------GDCSYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y+ + +Y+ A+ + R +YG K ENIVQA++RD+L M+ T Sbjct: 546 CYAHPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQ--TM 603 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV +HDE++ E S+ +C M + P+WA+GL L+A+GYE + YRK Sbjct: 604 RCCFIVGHIHDEMIIEADRR--MSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657 >gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916] gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916] Length = 653 Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 239/719 (33%), Positives = 342/719 (47%), Gaps = 111/719 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPS--D 56 M L ID+ET + VG + Y E I L AYA+DDEPVK+ D +P + Sbjct: 1 MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 Y V+ A N+ FER K G+ W CT V A T GLPSSL A Sbjct: 61 FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKR 165 L F E KM+EGKALI FCK P T+ N ++ W+ F EYCKR Sbjct: 121 LKFEEDKQKMKEGKALIQYFCK------PCKPTKTNGKRTRNLPEHDMEKWETFKEYCKR 174 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE RE+ L + E++LW LDQ INDRG R+DL LV + +++L E+ Sbjct: 175 DVEVEREIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEE 234 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + L+ ++ G ++ +++ ++ ++ S + K L L +L Sbjct: 235 AINLTG--LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESKDKNVKKILELRQLM 292 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338 + S I K T+ A D R+RG LQFYGA+RTGRW+G + Q QNLP+ E + Sbjct: 293 AKTS-IKKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARN 351 Query: 339 ILT----QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +L +TI+ L ++I D L S +R+ I ++G + +VAD + IEARV+A++A Sbjct: 352 LLRNGDFETIEFL--FDSIPDTL---SQLIRTAFIPTDGNRFIVADFSAIEARVIAYLAN 406 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMA 452 E W++ F G DIY + +K F P++K ++ RA GK+ ELALGY G + Sbjct: 407 EQWRLDVFKEGGDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRAFD 466 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + + V DW +A H W D+ + A+ +K Sbjct: 467 KTGSIPDEDLPKLVS------DWRKASPHITQFWWNVDKAAKKAITEKTT---------- 510 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 A H G+ ++ P ++ I LPS R+L Sbjct: 511 -VALHHGIKFIYD------------------------PGVLF--------IQLPSGRKLS 537 Query: 570 Y-----------SDVKGDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 Y SDV +Y + + Q R TYG KL ENIVQA +RD L E M Sbjct: 538 YLRPKIEEGKFGSDV---ITYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMAR 594 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 K G+ +V+ VHDE+V + SV +CS+ ++ WA GLPLKA+GYE Y K Sbjct: 595 VEKKGFKVVMHVHDELVLDV-SKEIGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652 >gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] Length = 640 Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 235/721 (32%), Positives = 339/721 (47%), Gaps = 128/721 (17%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLP+SL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRD 166 ++ K GK LI F S P T+AN + WQ+F YC +D Sbjct: 119 KLAQE--KDAAGKNLIKYF------SVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQD 170 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 V + ++L +P+ D E D ++ DQ INDRG +D +LV + + L ++ Sbjct: 171 VVVEMAIAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGEL 230 Query: 225 VKLTDGIIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKD 276 LT +SR L+ + + G+ D+ +EG LK +L Sbjct: 231 KALTGLDNPNSRAQLLPWLKEHGYSANGLTKADVEQELKKAEGELKRVLEL--------- 281 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ--- 333 +L ++ S++ K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R Sbjct: 282 ----KLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIK 337 Query: 334 ---ERSEEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVL 389 + E + + I A+ E + D L VR+ ++A +G V+D + IEARV+ Sbjct: 338 DLDDAREYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVI 394 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 AW AGE W++ F+ IY + ++ F PI+++ KE R GK+ ELALGYQGG K Sbjct: 395 AWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALK 454 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 M + + VK +++L G + Sbjct: 455 QMGA--------LNMGVK---------------------------EEELQGLVDD----- 474 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR ++ ++Q WKD+ A + +I +R + ++ R K + I LPS R L Sbjct: 475 WRRANKKIVQFWKDVQR--AAI----KAIKSRAPIKLGKIRFRYRKGFLFITLPSGRNLA 528 Query: 570 YSDVK---------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 Y+ K GD +Y + TYGGKL ENIVQA +RDIL E + Sbjct: 529 YARAKVEPGDYGDKIIYEGQGDRAYFTA-------QETYGGKLVENIVQATARDILAEAL 581 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 GYD+V VHDE + E + + LM + P WA+GLPL +EGY K Y Sbjct: 582 LRIEAAGYDVVFHVHDEAIIEGSG---LIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYM 638 Query: 675 K 675 K Sbjct: 639 K 639 >gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] Length = 644 Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 211/705 (29%), Positives = 339/705 (48%), Gaps = 92/705 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP ++ D +P +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 +YL D++V+ A+N+ FER + G+ + + W CT V A LP SL+ ALN Sbjct: 61 EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 + KM EGK LI FC P T+AN + W+LF YC RDV+ Sbjct: 121 DKK--KMSEGKDLIRYFCM------PCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVD 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +++ +L P+ D E+ L+ +DQ INDRG +D +L+ ++ + + + Sbjct: 173 VEKQIRNKLAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYE 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 ++ + + L+ +L GI++ +++ ++ ++ N +++ RLA S Sbjct: 233 ISG--LENPNSVSQLKDWLNE-KGIEVDSLAKAAVEELVE--NTQGDVAEMMKLRLAMSK 287 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L +++ Sbjct: 288 TSVKKYEAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVK 347 Query: 347 LNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 R + + + P + S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ Sbjct: 348 EGRYDLVELLYDSTP-DVLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEE 406 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 F IY T +K F+ PI +++K RA GKV LA Y G +M + Sbjct: 407 FRGAGKIYEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGAL----- 461 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 F +++L G ++WR + ++ Sbjct: 462 -------------------------------NFVEEEELKGLV-----QSWRTANPHIVN 485 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----- 574 W ++ V+E R++ V + + + I LPS R L Y + Sbjct: 486 YWYEIDGAVKAAVKE------RKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNR 539 Query: 575 ---GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 SY T+ + R +YG K ENIVQA +RD+L E M K G+DIV +HD Sbjct: 540 FGSESVSYEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHD 599 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V E P+ SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 600 EVVLEVPEGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9] gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9] Length = 640 Score = 297 bits (761), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 233/715 (32%), Positives = 336/715 (46%), Gaps = 116/715 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ +T Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITGL 236 Query: 231 IIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDLILNRL 282 +SR L+ + + G+ D+ +EG LK +L +L Sbjct: 237 ANPNSRAQLLPWLKEHGYSANGLTKADVEQELKTAEGELKRVLEL-------------KL 283 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ERS 336 ++ S++ K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + Sbjct: 284 QTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAR 343 Query: 337 EEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 E + + I A+ E + D L VR+ ++A +G V+D + IEARV+AW AGE Sbjct: 344 EYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGE 400 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 W++ F+ IY + ++ F PI+++ KE R GK+ ELALGYQGG K M + Sbjct: 401 QWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA-- 458 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + VK +++L G + WR ++ Sbjct: 459 ------LNMGVK---------------------------EEELQGLVDD-----WRRANK 480 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 ++Q WKD+ +I +R + +L R K + I LPS R L Y+ K Sbjct: 481 KIVQFWKDVQRAAI------KAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYARAKV 534 Query: 575 --------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 GD +Y + TYGGKL ENIVQA +RDIL E + Sbjct: 535 EPGDYGDKIIYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILAEALLRIEAA 587 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY +V VHDE + E ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 588 GYGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A] gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A] Length = 653 Score = 296 bits (758), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 228/714 (31%), Positives = 338/714 (47%), Gaps = 101/714 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG+ + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRD 166 N + K G LI F K P T+ N + + WQ F EYC +D Sbjct: 120 NIEQQ--KDTRGTQLINFFSK------PCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQD 171 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 V + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ Sbjct: 172 VNVEMAIANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEM 231 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +LT + + L+ +L G + + + L+ N+ + +++ RL+ Sbjct: 232 KELTG--LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQT 343 S S+ K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + Q Sbjct: 289 SNSSTKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQL 348 Query: 344 IQALN------RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 ++A + E + D L +R+ ++A G + +V+D + IEARV+AW A +DW Sbjct: 349 VKAKDVEGIELMYEDVPDTL---KQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDW 405 Query: 398 KIKAFANGEDIYVTTYAKAFN----TPIDKVS---KEQRAIGKVMELALGYQGGAKVFKT 450 ++ F IY T A+ F+ T D S K+ R GKV LALGYQGG K Sbjct: 406 VLEVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKA 465 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M + +++ E ++D + W Sbjct: 466 MGA-------------------------------LENGIEEHELQD---------IVDRW 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLV 569 R ++ + W + + +Q GG + PR L + + I LPS R+L Sbjct: 486 RTANKRIKNFWHETQKAVIDCLQNGG------IKKGPRGLKFYKKAGFLFIQLPSGRKLA 539 Query: 570 YSDV---KGDCSYLNTATSQ-----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 Y+ +GD Q ++TYGGKL ENIVQA +RD+L E M+ + G Sbjct: 540 YAKAHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREG 599 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 Y IV VHDE V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 600 YPIVFHVHDEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 643 Score = 296 bits (757), Expect = 9e-78, Method: Compositional matrix adjust. Identities = 218/707 (30%), Positives = 339/707 (47%), Gaps = 97/707 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M K+ ID+ET S L K GV+ YAE I L AY+ DD VK+ D +P ++L Sbjct: 1 MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DE++ A N+ FER+ + L + + W CT + + GLP SL+ L Sbjct: 61 SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 + KM EGKALI F S P T+ N ++ W +F EY +RDVE Sbjct: 121 DKQ--KMNEGKALIRYF------SIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRID---LDLVLKLQELIAQERKKLDED 223 E+ K+L P+ E + + +DQ INDRG ID +D +K E++ +E + Sbjct: 173 TEMEIKKKLSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENM---DR 229 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++LT + + L+ +L G+++ +++ ++S + N K+++ R Sbjct: 230 AIELTG--LENPNSPLQLKEWLNK-KGLEIDSLAKKDVESAIK--NAEGDIKEVLELRQE 284 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S S++ K + + + R RG +QFYGA+RTGR+SG + Q QNL R + L ++ Sbjct: 285 LSKSSVRKYDAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARS 344 Query: 344 IQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + ET+ P + S +R+ I G + +++D + IEARVLAWIA E W + Sbjct: 345 LVKNRDYETMEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVL 404 Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 AF NGEDIY T ++ F P++K ++ R GK+ LA GYQG K M G+ Sbjct: 405 DAFENGEDIYCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMG---GI 461 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ ++S + +WR + + Sbjct: 462 EMGLSEDELQS-------------------------------------IVDSWREANPNI 484 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + LW D+ VV+ R LV+ K + I LPS RRL Y K Sbjct: 485 VSLWWDIDSVVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGM 538 Query: 578 SYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + + ++ + +YGGK ENIVQAI+RDIL E M K G++IV+ + Sbjct: 539 NRFGGESVVYEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHI 598 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE+V E+ + S+ + +M+ P WA GL L A+G+E++ Y+K Sbjct: 599 HDEVVIESDSS---SIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642 >gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] Length = 653 Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 229/714 (32%), Positives = 337/714 (47%), Gaps = 101/714 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LGI + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRD 166 N + K G LI F K P T+ N + + WQ F EYC +D Sbjct: 120 NIEQQ--KDTRGTQLINFFSK------PCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQD 171 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 V + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ Sbjct: 172 VNVEMAIANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEM 231 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 LT + + L+ +L G + + + L+ N+ + +++ RL+ Sbjct: 232 KALTG--LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQT 343 S S+ K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + Q Sbjct: 289 SNSSTKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQL 348 Query: 344 IQALN------RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 ++A + E + D L +R+ ++A G + +V+D + IEARV+AW A +DW Sbjct: 349 VKAKDVEGIELMYEDVPDTL---KQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDW 405 Query: 398 KIKAFANGEDIYVTTYAKAFN----TPIDKVS---KEQRAIGKVMELALGYQGGAKVFKT 450 ++ F IY T A+ F+ T D S K+ R GKV LALGYQGG K Sbjct: 406 VLEVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKA 465 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M + +++ E ++D + W Sbjct: 466 MGA-------------------------------LENGIEEHELQD---------IVDRW 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLV 569 R ++ + W + + +Q GG + PR L + + I LPS R+L Sbjct: 486 RTANKRIKNFWHETQKAVIDCLQNGG------IKKGPRGLKFYKKAGFLFIQLPSGRKLA 539 Query: 570 YSDV---KGDCSYLNTATSQ-----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 Y+ +GD Q ++TYGGKL ENIVQA +RD+L E M+ + G Sbjct: 540 YAKAHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREG 599 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 Y IV VHDE V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 600 YPIVFHVHDEAVAEVPEGEK-SIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 646 Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 226/708 (31%), Positives = 335/708 (47%), Gaps = 96/708 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D V++ D T +PSD++ Sbjct: 1 MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L DETV+ A N+ FERI + LG+ I W C+ V A T GLP SL+ Sbjct: 61 TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----QAWQLFGEYCKRDVEAT 170 L + K+ EGK LI F + + NH+ W F +Y RD+E Sbjct: 121 VLKLDKQ--KLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++L P+ D D + LDQ INDRG +D+ LV + + + R +L + LT Sbjct: 179 MSIQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G++ + + + +L + + LA D++ R + S+ Sbjct: 239 E--LDNPNSVQQMKQWL-ADNGMETDTLGKKIVAELLKTAPL-DLA-DVLSLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV +DGR RG QF+GA+RTGRW+G + Q QNLP+ E L + + Sbjct: 294 VRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHL--EDLAEARALVR 351 Query: 349 RG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 G E + D L S +R+ + G +L+V+D + IEARV+AW+AGE+W+ Sbjct: 352 FGDFDALEMLYEDVPDTL---SQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQ 408 Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCG 456 FA G DIY + ++ F P++K ++ R GK+ ELALGY G K M + G Sbjct: 409 DVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMG 468 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L+ +D+ P+ AWR + Sbjct: 469 LE---------------------------EDELPQLV--------------DAWRQANPC 487 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------ 570 +++ W D+ + V+ +R + + + I LPS RRL Y Sbjct: 488 IVKFWWDVDKAAMEAVR------YKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIG 541 Query: 571 -SDVKGDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + G C +Y AT + R +YG K ENIVQA +RDILC M+ T IV+ Sbjct: 542 ENKFGGQCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQ--TLQHCSIVMH 599 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV E P S+ +C M + PSWAKGL L+A+GYE Y+K Sbjct: 600 VHDEIVIEA--DPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645 >gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188] gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188] gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] Length = 653 Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 229/714 (32%), Positives = 337/714 (47%), Gaps = 101/714 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG+ + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRD 166 N + K G LI F K P T+ N + + WQ F EYC +D Sbjct: 120 NIEQQ--KDTRGTQLINFFSK------PCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQD 171 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 V + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ Sbjct: 172 VNVEMAIANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEM 231 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +LT + + L+ +L G + + + L+ N+ + +++ RL+ Sbjct: 232 KELTG--LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQT 343 S S+ K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + Q Sbjct: 289 SNSSTKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQL 348 Query: 344 IQALN------RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 ++A + E + D L +R+ ++A G + +V+D + IEARV+AW A +DW Sbjct: 349 VKAKDVEGIELMYEDVPDTL---KQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDW 405 Query: 398 KIKAFANGEDIYVTTYAKAFN----TPIDKVS---KEQRAIGKVMELALGYQGGAKVFKT 450 ++ F IY T A+ F+ T D S K+ R GKV LALGYQGG K Sbjct: 406 VLEVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKA 465 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M + +++ E ++D + W Sbjct: 466 MGA-------------------------------LENGIEEHELQD---------IVDRW 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLV 569 R ++ + W + + +Q GG + PR L + + I LPS R+L Sbjct: 486 RTANKRIKNFWHETQKAVIDCLQNGG------IKKGPRGLKFYKKAGFLFIQLPSGRKLA 539 Query: 570 YSDV---KGDCSYLNTATSQ-----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 Y+ +GD Q ++TYGGKL ENIVQA +RD+L E M K G Sbjct: 540 YAKAHLEQGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAG 599 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 Y IV VHDE V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 600 YPIVFHVHDEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] Length = 646 Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 225/702 (32%), Positives = 332/702 (47%), Gaps = 88/702 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S + K GV+AY AE I L AYA++D+ + + D +P +++ L Sbjct: 2 LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + ++ A N+ FER K L +P ++W C++V A G SL+ A +LN + Sbjct: 62 TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNLQQQ 121 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 KM+EGKALI F ++++ W++F YCK+DVE R + K+L P Sbjct: 122 --KMKEGKALIRYFSMPCKRGERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYP 179 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IND G +ID LV E + K E+ LT G+ + Q Sbjct: 180 VTKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALT-GLENPNSQV- 237 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ +L G+ +S+ ++ +L ++ + L L R S +++ K + AV Sbjct: 238 QLKGWL-ETKGVKAESLSKEKVRELLKEVEDEKVKRVLKL-RQELSKTSVKKYEAIKRAV 295 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEEILTQTIQALNRGETIA 354 D R+RG L+FYGA+RTGRWSG + Q QNLPR E + +L + + Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 P L S +R+ I + + +V+D + IEARV+AW+AGE W I F +Y + Sbjct: 356 VPEVL-SQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAAS 414 Query: 415 KAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTM-ASHCGLDLQQFSQNVKS 468 + F PI+K+ K R GKV LA GYQG M A GL ++ S V Sbjct: 415 RMFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMGAVKMGLKEEELSGIVA- 473 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 AWR + +++LW+ + Sbjct: 474 ----------------------------------------AWRKSNSNIVKLWRKI---- 489 Query: 529 ACVVQEGGSISARRVANVPR----LVMRRHKRDVHIVLPSSRRLVY--SDVKGDCSY--- 579 E +I A R V + L + + I LPS R L Y ++ D + Sbjct: 490 -----EDAAIKAVREKKVVKMQYGLEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKL 544 Query: 580 ------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + T R TYGGKLTENIVQAI+RD L M + GY IV VHDE++ Sbjct: 545 KLTYEGIEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVI 604 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P+ + S+ + +M K WAKGLPLKA+G+E Y+K Sbjct: 605 LDVPNG-FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645 >gi|139473888|ref|YP_001128604.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2] gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2] Length = 640 Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 233/715 (32%), Positives = 336/715 (46%), Gaps = 116/715 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL 236 Query: 231 IIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDLILNRL 282 +SR L+ + + + G+ D+ +EG LK +L +L Sbjct: 237 DNPNSRAQLLPWLKEHGYSVNGLTKADVEQELKTAEGELKRVLEL-------------KL 283 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ERS 336 ++ S++ K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + Sbjct: 284 QTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAR 343 Query: 337 EEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 E + + I A+ E + D L VR+ ++A + V+D + IEARV+AW AGE Sbjct: 344 EYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGE 400 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 W++ F+ IY + ++ F PI+++ KE R GK+ ELALGYQGG K M + Sbjct: 401 QWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA-- 458 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + VK +++L G + WR ++ Sbjct: 459 ------LNMGVK---------------------------EEELQGLVDD-----WRRANK 480 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 ++Q WKD+ +I +R + +L R K + I LPS R L Y+ K Sbjct: 481 KIVQFWKDVQRAAI------KAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYARAKV 534 Query: 575 --------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 GD +Y + TYGGKL ENIVQA +RDIL E + Sbjct: 535 EPGDYGDKIVYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILAEALLRIEAA 587 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY +V VHDE + E ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 588 GYGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes MGAS315] gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage 315.6] gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1] gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus pyogenes MGAS315] gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1] gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 640 Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 233/716 (32%), Positives = 338/716 (47%), Gaps = 118/716 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ LT G Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALT-G 235 Query: 231 IIRSSRQTYAL---RMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDLILNR 281 + + +T L + + + +G+ D+ +EG LK +L + Sbjct: 236 LDNPNSRTQLLPWLKEHGYSASGLTKADVEKELKTAEGELKRVLEL-------------K 282 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ER 335 L ++ S++ K + A SDGR+ G LQFYGASRTGRW+G V Q QNL R + Sbjct: 283 LQTAMSSLKKYEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDA 342 Query: 336 SEEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 E + + I A+ E + D L VR+ ++A +G V+D + IEARV+AW AG Sbjct: 343 REYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAG 399 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 E W++ F+ IY + ++ F PI+++ KE R GK+ ELALGYQGG K M + Sbjct: 400 EQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA- 458 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + VK +++L G + WR + Sbjct: 459 -------LNMGVK---------------------------EEELQGLVDD-----WRRAN 479 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + ++Q WKD+ +I +R + +L R K + I LPS R L Y+ K Sbjct: 480 KKIVQFWKDVQRAAI------KAIKSRAPVRLGKLRFRYRKGFLFITLPSGRNLAYARAK 533 Query: 575 ---------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 GD +Y + TYGGKL ENIVQA +RDIL E + Sbjct: 534 VEPGDYGDKIVYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILAEALLRIEA 586 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G+ +V VHDE + E ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 587 AGHGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639 >gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047] gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047] Length = 640 Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 233/715 (32%), Positives = 335/715 (46%), Gaps = 116/715 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG+ + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172 + K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLVQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTGL 236 Query: 231 IIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQLAKDLILNRL 282 +SR L+ + + + G+ D+ +EG LK +L +L Sbjct: 237 DNPNSRAQLLPWLKEHGYSVNGLTKADVEQELKTAEGELKRVLEL-------------KL 283 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ERS 336 ++ S++ K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + Sbjct: 284 QTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAR 343 Query: 337 EEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 E + + I A+ E + D L VR+ ++A + V+D + IEARV+AW AGE Sbjct: 344 EYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGE 400 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 W++ F+ IY + ++ F PI+++ KE R GK+ ELALGYQGG K M + Sbjct: 401 QWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMGA-- 458 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + VK +++L G + WR ++ Sbjct: 459 ------LNMGVK---------------------------EEELQGLVDD-----WRRANK 480 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 ++Q WKD+ +I +R + +L R K + I LPS R L Y+ K Sbjct: 481 KIVQFWKDVQRAAI------KAIKSRAPIKLGKLRFRYRKGFLFITLPSGRNLAYARAKV 534 Query: 575 --------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 GD +Y + TYGGKL ENIVQA +RDIL E + Sbjct: 535 EPGDYGDKIVYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILAEALLRIEAA 587 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY +V VHDE + E ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 588 GYGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] Length = 653 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 229/714 (32%), Positives = 335/714 (46%), Gaps = 101/714 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG+ + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRD 166 N + K G LI F K P T+ N + + WQ F EYC +D Sbjct: 120 NIEQQ--KDTRGTQLINFFSK------PCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQD 171 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 V + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ Sbjct: 172 VNVEMAIANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEM 231 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 LT + + L+ +L G + + + L+ N+ + +++ RL+ Sbjct: 232 KALTG--LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQT 343 S S+ K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + Q Sbjct: 289 SNSSTKKYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQL 348 Query: 344 IQALN------RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 ++A + E + D L +R+ ++A G + +V+D + IEARV+AW A +DW Sbjct: 349 VKAKDVEGIELMYENVPDTL---KQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDW 405 Query: 398 KIKAFANGEDIYVTTYAKAFN----TPIDKVS---KEQRAIGKVMELALGYQGGAKVFKT 450 + F IY T A+ F+ T D S K+ R GKV LALGYQGG K Sbjct: 406 VLDVFRTHGKIYEATAAQMFHLGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKA 465 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M + +++ E ++D + W Sbjct: 466 MGA-------------------------------LENGIEEHELQD---------IVDRW 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLV 569 R ++ + W + + +Q GG + PR L + + I LPS R+L Sbjct: 486 RTANKRIKNFWHETQKAVIDCLQNGG------IKKGPRGLKFYKKAGFLFIQLPSGRKLA 539 Query: 570 YSDV---KGDCSYLNTATSQ-----LMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 Y+ +GD Q ++TYGGKL ENIVQA +RD+L E M K G Sbjct: 540 YAKAHLKEGDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAG 599 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 Y IV VHDE V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 600 YPIVFHVHDEAVAEVPEGEK-SIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652 >gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4] gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Lactobacillus gasseri ATCC 33323] gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4] Length = 644 Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 218/713 (30%), Positives = 341/713 (47%), Gaps = 108/713 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + +G + W C+ V + T GLP SL + L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 K+ GK L+ FC P T++N + WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 E+ ++L P+S E + + +DQ INDRG RID LV +K QE + ++ + Sbjct: 173 VEMEITQKLERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQK 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ +L G+++ +S+ ++ +L + ++ + L L +L Sbjct: 233 LTGLAN-----PNSPLQLKDWLNQ-RGMNIDSLSKASVAQLL-QTTTGKVHQVLSLRQLL 285 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S S++ K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + L + Sbjct: 286 SK-SSVKKYQAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEA 342 Query: 344 IQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + + +G T A + + S +R+ I S G VAD + +EARV+AW++GE+W Sbjct: 343 RELVKQGNTTALSMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEW 402 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-ASH 454 + KAFAN EDIY + ++ F P+ K V+ E R GK+ ELALGY G K M A++ Sbjct: 403 RQKAFANNEDIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMGATN 462 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 GL ++ S + W A H Sbjct: 463 LGLTEEELH------SLVQMWRNASPH--------------------------------- 483 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPR---LVMRRHKRDVHIVLPSSRRLVYS 571 ++Q W D+ + ++ + + + R + +R L S R+L YS Sbjct: 484 --IVQFWWDIDKAAKECIKSHLPQATHGIKFIYRSGCMFLR---------LRSGRKLCYS 532 Query: 572 DVKGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 K + + + M R TYG KL ENIVQA SRD+L E M+ G Sbjct: 533 KPKIGINRFGSESITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGN 592 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V+ +HDE V + P +S+ + +MT+ P WA GL L A G+ + Y+K Sbjct: 593 PVVMHIHDEAVIDAPAN--YSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643 >gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] Length = 640 Score = 294 bits (752), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 224/701 (31%), Positives = 318/701 (45%), Gaps = 88/701 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET SP L K GV+ Y I L +YA D V+ D +P +L Sbjct: 1 MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A+N+ FER LG + W C+ V A T GLP SLK+ LN Sbjct: 61 DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 KM+EGK LI FC +S P D W+LF Y RDVE + Sbjct: 121 DAQ--KMDEGKDLIKHFCVPDDNSQRRLPSSDPA------GWKLFKMYNARDVEVETAIR 172 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+ D + + +DQ INDRG RID L + + R + KLT + Sbjct: 173 QKLADFPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--L 230 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G + M++ ++ L+ N T ++ + R S S++ K Sbjct: 231 DNPASPLQLQEWLNQ-HGCPIESMAKESVDDALA--NATGQVREALELRQELSRSSVAKY 287 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + + +D R G LQFYGA+RTGRW+G + Q QNLPR + + + GET Sbjct: 288 RKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGET 347 Query: 353 -------IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 + D L S +R+ I S + +VAD + IEARVLAW+AGE+ + AF NG Sbjct: 348 LEMLYSSVPDTL---SQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNG 404 Query: 406 EDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 ED+Y T + F P++K V+ E R GK+ LA GY G K M Sbjct: 405 EDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG----------- 453 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+K L + + AWR + ++QLW Sbjct: 454 -----------------------------ALKMGLSEDELQPIVDAWRQANPNIVQLWHK 484 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT 582 + + G ++ R L + + I LPS RRL Y G + T Sbjct: 485 VDNAATRAISTGRPLTLR------NLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGT 538 Query: 583 ATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 + + + + TYGGKL ENIVQA +RD+L E + G+ IV+ +HDE+V Sbjct: 539 SITYWGQGVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVI 598 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P +V +C+LM + P WA+GLP+ A GYE Y+K Sbjct: 599 DEPINSGTTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639 >gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] Length = 644 Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 230/704 (32%), Positives = 338/704 (48%), Gaps = 93/704 (13%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +L ID+ET S P+ K G Y + I L AY++DDEPV++ D T + +P ++ Sbjct: 2 ELSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMT-KDPLPERVVDA 59 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L ++ + A N+ FE + KK D W CTSVLA LP+SL N AL E Sbjct: 60 LYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGE 118 Query: 121 HLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K GK LI F K + +P + + W + EY ++DV R + KRL Sbjct: 119 --AKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRL 176 Query: 178 IPLSDG--ERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDEDIVKLTDGII 232 + L E + WLLDQ IN RG ++D++LV L + I +E + + + L Sbjct: 177 LSLKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATESSKILTGL----- 231 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ +L G DL M + + ++L+ +I + ++ NR S+I K Sbjct: 232 ENPNSTMQLKEWLTARLGYDLETMRKDDVSNLLAQ-DIPSDVRKVLQNRQVLGNSSIKKY 290 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEEIL-TQTIQA 346 + AV SDGR+ G LQFYGA R+GRW+G V Q QNLPR + + ++L ++ ++ Sbjct: 291 LAMKNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEM 350 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 L+ +P + +R+ ++A +G + +VAD + IEARV+AW+A E W+ FA G Sbjct: 351 LDL--LYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGG 408 Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + + F+ P++K V+ R GKV ELALGY GG K M S Sbjct: 409 DIYCASASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDS----------- 457 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 + + PE +L G + +AWR + + WKD Sbjct: 458 ---------------------KGEIPE----KELPG-----IIEAWRQASPRITKFWKDA 487 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------GDCS 578 VV+ G + + N+ + K + I LPS RRL Y+ + G S Sbjct: 488 DSAAKQVVRTGEPVRIIQ-GNIKFF---KSKGFLFIELPSGRRLAYARPRLGLNQFGSES 543 Query: 579 YLNTATSQLM----RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 Q+ R TYGGKL ENIVQA++RD L M +K GY IV +HDE+V Sbjct: 544 IEYDGMDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVI 603 Query: 635 ETPDTPYFSVGTL---CSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P VG+L +M + W +GL L A G+E Y K Sbjct: 604 EAP----IGVGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643 >gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 646 Score = 293 bits (749), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 224/708 (31%), Positives = 332/708 (46%), Gaps = 96/708 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S +PL K GV+ Y E I L AY+ D +PV++ D +P ++L Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L DE V+ A N+ FERI + LG + + W C+ V A T GLP SL+ Sbjct: 61 LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCK 164 L + K+ EGK LI FC+ P T+ N + W +F +Y Sbjct: 121 VLGLEKQ--KLTEGKDLIKYFCQ------PCAPTKTNGQRTRNRPFHAPDKWAMFKKYNI 172 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + +RL P+ D + +DQ INDRG R+D++LV E+ + R KL E Sbjct: 173 RDVETEMGIQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTE 232 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + ++T+ + + ++ +L G++ + + + +L S +L++ L L R Sbjct: 233 TMKEITE--LENPNSVQQMKAWLS-DNGLETDTLGKKAVAELLK-SAPPKLSQVLTL-RQ 287 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + + V +DGR RG QFYGA+RTGR+SG Q QNLP+ S+ + Sbjct: 288 QLAKSSVRKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEAR 347 Query: 343 TIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 ++ E + D S +R+ I G + +VAD + IEAR++AW AGE W+ Sbjct: 348 SLVRSGNFEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWR 407 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 FA G DIY + ++ F P++K ++ R GK+ ELALGY G K M + Sbjct: 408 QDVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA--- 464 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 LD+ +D+ P AWR + Sbjct: 465 LDMG-----------------------LTEDELPPLV--------------DAWRQSNPN 487 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-- 574 +++ W ++ V+ + S + R M + I LPS R+L Y K Sbjct: 488 IVKFWWNVDHAVMEAVKFKHTTSEYGLTFSCRSGM------LFITLPSGRKLAYVKPKIG 541 Query: 575 -----GDCSYLNTATSQLMRER--TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 G C S ER +YG K ENIVQA +RDILC M+ T IV+ Sbjct: 542 TNKFGGQCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQ--TLRCCSIVMH 599 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +HDE+V E P S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 600 IHDEVVIEA--DPSMSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] Length = 645 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 232/718 (32%), Positives = 337/718 (46%), Gaps = 120/718 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YA + L Y D V++ D +P +++ Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D +V A N++FER+ LG + + W CT V + T GLP SL++A AL Sbjct: 64 SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 + K+ EGK LI FC P T+AN + W+ F Y RDVE Sbjct: 124 EKQ--KLTEGKDLIRYFCV------PCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVE 175 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ KRL P+ D + + LDQ INDRG +D++LV + + A+ R++L + + + Sbjct: 176 TEMQIQKRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQE 235 Query: 227 LTD----GIIRSSRQTYALRMYLFLITG----IDLVDMSEGTLKSILSHSNITQLAKDLI 278 LT ++ +Q A G +LV + LK++LS QLAK Sbjct: 236 LTGLDNPNSVQQMKQWLADHGLETDTLGKKVVAELVRSAPEPLKTVLSLRQ--QLAK--- 290 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 S++ K + AV +DGR G QFYGA+RTGR+SG + Q QNLP+ S+ Sbjct: 291 --------SSVKKYAAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSD- 341 Query: 339 ILTQTIQALNRG----------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 L Q +AL RG E I D L S +R+ + +G+K +VAD + IEARV Sbjct: 342 -LAQA-RALMRGGNYEAISMLYEDIPDTL---SQLIRTAFVPQDGRKFIVADFSAIEARV 396 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446 +AW AGE W++K F +G+DIY + ++ F+ P++K V+ R GK+ ELALGY G Sbjct: 397 IAWFAGERWRLKVFEDGDDIYSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVG 456 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K+M A++ L + + Sbjct: 457 ALKSMG----------------------------------------ALEMGLAEEELQPL 476 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 AWR + + Q W D+ V++ + + + R M + I LPS R Sbjct: 477 VDAWRTSNPMITQFWWDVDRAVKECVKKRVPMESHGLHFDYRSAM------LFITLPSGR 530 Query: 567 RLVYSDV--------KGDCSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RL Y + +Y+ + + R +YG K ENIVQ +RDILC M+ Sbjct: 531 RLAYVKPRIGENQFGRESVTYMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMR-- 588 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T IV VHDEI+ E S+ +C M + PSWAKGL L+A+GYE + Y+K Sbjct: 589 TLRNCAIVAHVHDEIIIEADRR--MSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644 >gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] Length = 601 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 213/664 (32%), Positives = 308/664 (46%), Gaps = 86/664 (12%) Query: 34 AYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDI 88 AYA DE LW D E PS+ Y A NS FE ++ + Sbjct: 2 AYAIGDEDPILWLPGDDLPEFVTNPSEFTIY---------AWNSFFEWCIWHHVQEWSNA 52 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 P W T+ LA +P +L AL + K + GK LI R K P Sbjct: 53 PIFLWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSK------PNRGK 106 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 R + F EYC++DV R + RL PLS ER +W LDQTIN RG ID V Sbjct: 107 RIQDADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVEN 166 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 +I Q +KL++++ +LT + + Q + Y+ G L+ + L+++L Sbjct: 167 ALLIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLEDE 226 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + +A+ LI R ++ K L + V+ D R G L ++GA+ TGRWSG FQPQ Sbjct: 227 TLPPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQPQ 285 Query: 329 NLPRQERSEEILTQTIQALNRGET------IADPLGLASDCVRSCIIASNGKKLVVADLA 382 NLPR S + I+ ++ DP+ S +R I A GK+L+V D + Sbjct: 286 NLPRP--SFKDTDNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDYS 343 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IEARVL W+AG++ + G +IY T ++ + P +KV++EQR IGKV LALGYQ Sbjct: 344 QIEARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGYQ 403 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 GGAK F+ MA G+++ D + A+ Sbjct: 404 GGAKAFQGMAEVYGVEI--------------DTDLADE---------------------- 427 Query: 503 CELVKKAWRAKHQGVLQLWKDLTE-GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 +K WR ++ +++ W + + V G + R + R + Sbjct: 428 ---IKVDWRVANRKIVKFWWGVEKAALNAVTHPGKTFEIRAIK------FRFTDNYLFCR 478 Query: 562 LPSSRRLVYSDVKGDCSYL----------NTATSQLMRERTYGGKLTENIVQAISRDILC 611 LPS R L Y K N+ T + R+ TYGGKL ENI QA++RD++ Sbjct: 479 LPSGRLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMA 538 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 E M GY++VL+VHDE+++E D + SV LM + P WAKGLP+ +EG+E Sbjct: 539 EAMLRVENAGYEVVLSVHDELIAEANDD-FGSVEEFEQLMCELPVWAKGLPVTSEGFECL 597 Query: 672 RYRK 675 RYRK Sbjct: 598 RYRK 601 >gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 662 Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 235/730 (32%), Positives = 339/730 (46%), Gaps = 124/730 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L YA D V++ D + +P +++ Sbjct: 1 MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKK---TLGIDIPS-----------------KRWICTSV 98 L D+ V A N+ FER+ + LG+ + + W C+ V Sbjct: 61 DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN------- 151 A T GLP SLK L + KM+EGKALI F S P T+AN Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQ--KMDEGKALIKYF------SVPCAPTKANGGRTRNM 172 Query: 152 ---HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + W+ F Y KRDVE + +RL P+ D D + +DQ INDRG R+D+DLV Sbjct: 173 PFHDPEKWETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLV 232 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 K E+ + R +L + +T+ + + ++ +L G++ + + + ++ Sbjct: 233 AKAIEMDTRSRTELTTAMKDITE--LDNPNSVQQMKQWLS-DNGLETDSLGKKVVAELIK 289 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + ++L L L R + S++ K T+ AV DGR RG FYGA+RTGRW+G + Q Sbjct: 290 TAP-SELQTVLEL-RQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQ 347 Query: 327 PQNLPRQERSEEILTQTIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLV 377 QNLP+ E L + G E + D L S +R+ I +G +L Sbjct: 348 LQNLPQNHL--EDLADARALVKSGDFDAVKLLYEDVPDTL---SQLIRTAFIPKDGTQLY 402 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVM 435 V+D + IEARV+AW AGE W+ K FA+G DIY + ++ F+ P++K V+ R GK+ Sbjct: 403 VSDFSAIEARVIAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIA 462 Query: 436 ELALGYQGGAKVFKTM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 ELALGY G K M A GL +D+ P Sbjct: 463 ELALGYGGSVGALKAMGAIEMGLS---------------------------EDELPPLV- 494 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 AWR + +++ W D+ V+ + S+ + R M Sbjct: 495 -------------DAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYGLTFSCRSGM--- 538 Query: 555 KRDVHIVLPSSRRLVYSDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAI 605 + I LPS R L Y K G+C +Y AT + R +YG K ENIVQA Sbjct: 539 ---LFITLPSGRNLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQAT 595 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665 SRDILC MK T +IV+ +HDE+V E P+ S+ LC M + P WA+GL L+A Sbjct: 596 SRDILCYAMK--TLRNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRA 651 Query: 666 EGYEAKRYRK 675 +GY Y+K Sbjct: 652 DGYTTPFYKK 661 >gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 645 Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 227/707 (32%), Positives = 330/707 (46%), Gaps = 95/707 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + ID+ET S PL K GV+ YAE I L Y+ D V++ D +P ++L Sbjct: 1 MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DETV A N++FER+ + LGI + W C+ + A T GLP SLK+ L Sbjct: 61 AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K+EEGK LI FC P TR+N + W+LF EY KRDVE Sbjct: 121 DRQ--KLEEGKDLIRYFC------VPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD--EDI 224 + RL P+ + E + +++DQ INDRG +D V Q + ER K E Sbjct: 173 TEMAIQARLKKFPVPESEWENYVIDQEINDRGILVDTTFV--TQAICCDERSKAVCLERA 230 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 LTD + + L +L G+ + +++ + +L + T ++++ R Sbjct: 231 QNLTD--LENPNSPLQLMDWLH-GKGLSVESLAKSEVTKMLKTA--TGDVREVLELRQQL 285 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 S +++ K + +D R RG QFYGA+RTGR++G + Q QNLP+ ++ +T+ Sbjct: 286 SKTSVKKYMAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTL 345 Query: 345 QALNRGETIADPLGLASDC----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 E + SD +R+ + + VVAD A IEARVLAW+AGE W + Sbjct: 346 VKDGDFELLDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLD 405 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F DIY T ++ F+ ++K + + R GK L+ GY G M + Sbjct: 406 VFREHGDIYCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMGA----- 460 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 E +K++ + +L WRA + ++ Sbjct: 461 -------------------------------VESGMKEEELQPLVDL----WRASNPHIV 485 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVYSDVK-GD 576 Q W D+ V+ RRV + +K V I LPS R L Y+ + G+ Sbjct: 486 QFWWDVDRAVKTCVK-------RRVEVETHGIRCVYKSGVLFIRLPSGRELAYAKPRIGE 538 Query: 577 CSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + + T + R T+GGKL ENI Q +RD+L MK G+DIV+ V Sbjct: 539 NRFGGESVTYEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHV 598 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDEIV E P SV +CS+M +NP WAKGLPLKA+GYE + YRK Sbjct: 599 HDEIVLEVP-YGVSSVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644 >gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 652 Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 218/699 (31%), Positives = 330/699 (47%), Gaps = 79/699 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L K GV+ Y E I L AYA+DDEP+ + D + +P + + L Sbjct: 5 LSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQVTKDL 64 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D V+ A+N+ FER K +P ++W CTSV A T GLP +L L Sbjct: 65 TDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLGLDAQ 124 Query: 122 LTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKRL 177 K GK LI F CK + + +H W+ F +YCK+DV R + K++ Sbjct: 125 --KDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAIRKKI 182 Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIR 233 P+ + E LW LDQ IND G R+D LV + + Q +LD + +LT D Sbjct: 183 EKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTGLDNPNS 242 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 +++ T L+ + D G L +T++ + R S ++ K Sbjct: 243 TTQLTVWLKKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLE----LRKEMSKTSTKKYE 298 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + A+ SD R RG LQF GA+RT RW+G + Q QNLP+ + + + + + + E I Sbjct: 299 AMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKFEAI 358 Query: 354 A----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 P + S +R+ I S+G + +V+D + IEARV+AW+AGE W++K F + IY Sbjct: 359 ELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHGKIY 418 Query: 410 VTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNV 466 + + F+ PI++++K R GK+ ELALGY G + M + GLD Sbjct: 419 EASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMGALKMGLD-------- 470 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 D+ P+ AWR + +++LW D+ + Sbjct: 471 -------------------ADELPDLVT--------------AWRNSNPKIVKLWWDVDK 497 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------GDCSYL 580 V+E + + + + I LPS R+L Y K G + Sbjct: 498 AAMTAVREHMPVRIQY-----GITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPALT 552 Query: 581 NTATSQLMR--ER--TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 Q+ + ER TYG KL ENIVQA++RD L M GYDI + VHDE++ + Sbjct: 553 YEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVILDV 612 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P+T ++ + +M++ WA GLPL+A+GYE + Y+K Sbjct: 613 PNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651 >gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [butyrate-producing bacterium SM4/1] Length = 646 Score = 290 bits (741), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 226/714 (31%), Positives = 330/714 (46%), Gaps = 108/714 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET S QPL K GV+ Y E I L AY+ D PV+ D +PS++L Sbjct: 1 MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+ V A N+ FERI + LG + W C+ V A GLP SL+ A Sbjct: 61 CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCK 164 L + K+ EGK LI FC+ P T++N + W F +Y Sbjct: 121 VLGLEKQ--KLAEGKDLIKYFCQ------PCAPTKSNGQRTRNLPKHSPDKWLAFKKYNI 172 Query: 165 RDVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + RL+ P+ D + + LDQ INDRG +D++LV + ++ + R +L + Sbjct: 173 RDVETEMSIQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQ 232 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + +LT + + ++ +L G++ + + + +L + QL K L L R Sbjct: 233 AMKELTS--LDNPNSVQQMKQWL-ADNGVETDTLGKKAVAELLKTAP-QQLQKVLTL-RQ 287 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + AV +DGR RG QFYGA+RTGRW+G + Q QNLP+ + LT+ Sbjct: 288 QLAKSSVKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDD--LTE 345 Query: 343 TIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + G E + D L S +R+ + +K +VAD + IEARV+AW+A Sbjct: 346 ARGLVRAGGFDALEMLYEDVPDTL---SQLIRTAFVPQGNRKFIVADFSAIEARVIAWLA 402 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM 451 E W+ FA G+DIY + ++ F P++K V+ R GK+ ELALGY G K M Sbjct: 403 DEKWRQDVFAEGKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAM 462 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + GL +D+ P AW Sbjct: 463 GALEMGLS---------------------------EDELPALV--------------SAW 481 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + ++Q W + +++ + ++ + I LPS R L Y Sbjct: 482 RQANPKIVQFWWAVDRAVM------DAVTRKTTTKTHGIIFSARNGMLFITLPSGRSLSY 535 Query: 571 SDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 K GDC +Y T + R +YG K ENIVQA SRDILC MK T Sbjct: 536 VKPKIGENRFGGDCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMK--TLRC 593 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV+ +HDE+V E S+ +C M + P WA GL L+A+GYE Y+K Sbjct: 594 CSIVMHIHDEVVIEADRR--MSLQAVCDQMGRTPPWANGLQLRADGYETDFYKK 645 >gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 646 Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 218/700 (31%), Positives = 338/700 (48%), Gaps = 87/700 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L GV+ Y+ I L AY+ DDE D P + ++ L Sbjct: 5 LAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIEML 64 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D+TV A N+ FER F + W CT+V A LP SL+ L + Sbjct: 65 FDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLDKQ 124 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVEATR 171 KM EGK LI FC P T++N + W+ F YC RDV+ + Sbjct: 125 --KMTEGKELIKYFCS------PCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEK 176 Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ++ +RL P+ E++++ LDQ INDRG +D +LV ++ +LT Sbjct: 177 QIRQRLAKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTG 236 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--SILSHSNITQLAKDLILNRLASSGS 287 + + L+++L G+++ +++ T+K S+ + ++ ++ K RLA+S + Sbjct: 237 --LENPNSVSQLKLWL-KEKGLEVDSLAKDTVKDLSMKAEGDVQEVLK----LRLATSKT 289 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K + +V ++ R+ G LQFYGA+RTGRW+G + Q NLP+ + L + + + Sbjct: 290 SVKKYEAIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSE 349 Query: 348 NRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R E + + P + S+ +R+ +A G + +++D + IEARVLAW+AGE+W+++ F Sbjct: 350 GRYEEVELFYESTP-NVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVF 408 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDL 459 IY + + F+ I++++K R GK+ ELALGY G +M + GL Sbjct: 409 ETHGKIYEASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMGALKMGLTE 468 Query: 460 QQFSQNVKSTSTFEDWEQAESH---HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ V + W A H W D+ AV+DK K Sbjct: 469 EELPGLVST------WRSANPHITAFWWAVDEAAVTAVRDK---------------KPSK 507 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANV-PRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V ++ + G V G R+++ V PR+++ + R+ L Y + Sbjct: 508 VGRVSFEYKSGILFVTLPSG----RKLSYVKPRMMLNKFGRE---------GLTYEGI-- 552 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + + MR TYG KL ENIVQA SRDIL E M K G+DIV VHDE+V E Sbjct: 553 ------GESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLE 606 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 PD SV + +M NP W +GLPLKA G+E+ Y+K Sbjct: 607 VPDGKS-SVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645 >gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] Length = 646 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 221/708 (31%), Positives = 337/708 (47%), Gaps = 96/708 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S +PL K GV+ Y E I L AY+ D + V++ D +P ++L Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L +ETV+ A N+ FERI + LG + S+ W C+ + A T GLP SL+ Sbjct: 61 LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCK 164 L + K+ EGK LI FC+ P T+ N + W +F +Y Sbjct: 121 VLGLEKQ--KLSEGKDLIKYFCQ------PCAPTKTNGQRTRNRPFHAPDKWAMFKKYNI 172 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + +RL P+ D + +DQ INDRG R+D++LV E+ + R +L E Sbjct: 173 RDVETEMGIQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTE 232 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + ++T+ + + ++ +L G++ + + + +L ++ +L++ L L R Sbjct: 233 TMKEITE--LENPNSVQQMKAWLS-DNGLETDTLGKKAVTELLKSAS-PKLSQVLTL-RQ 287 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + + V +DGR RG QFYGA+RTGR+SG Q QNLP+ + + Sbjct: 288 QLAKSSVRKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEAR 347 Query: 343 TIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 ++ E + D S +R+ I G + +VAD + IEARV+AW AGE W+ Sbjct: 348 SLVRSGNFEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWR 407 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 + FA G DIY + ++ F P++K ++ R GK+ ELALGY G K M + Sbjct: 408 QEVFAKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGA--- 464 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 LD+ +++ P AWR + Sbjct: 465 LDMG-----------------------LTEEELPPLV--------------DAWRQSNPN 487 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-- 574 +++ W ++ V+ + S+ + R M + I LPS R+L Y K Sbjct: 488 IVKFWWNVDHAVMEAVKFKHTTSSYGLTFSCRSGM------LFITLPSGRKLAYVKPKLG 541 Query: 575 -----GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 G C +Y T + R +YG K ENIVQA +RDILC MK T IV+ Sbjct: 542 TNKFGGQCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMK--TLRCCSIVMH 599 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +HDE+V E P S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 600 IHDEVVIEA--DPRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378] Length = 684 Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 228/708 (32%), Positives = 335/708 (47%), Gaps = 96/708 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y A+ + L YA D + VK+ D + +P ++L Sbjct: 39 MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDI-----PSKRWICTSVLARTNGLPSSLKNAC 113 L DET+ A N+ FER+ + LG PS W C+ V + GL SL+ Sbjct: 99 DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSS-WKCSMVWSAYMGLALSLEGVG 157 Query: 114 LALNFSEHLTKMEEGKALIARFC----KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + K+ EGK LI FC I+ + + WQ F Y KRDVEA Sbjct: 158 AVLGLEKQ--KLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEA 215 Query: 170 TRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ +RLI P+ + D + LDQ INDRG ++D+D V + + +KL + ++ Sbjct: 216 EIQIQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQI 275 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T+ + + ++ +L G+++ + + + L ++ +L + L L R + S Sbjct: 276 TN--LDNPNSVQQMKSWL-CENGLEMETLGKKAVAEKLKETD-GELNEVLSL-RQQLAKS 330 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEEIL-- 340 ++ K + AV SD R RG QFYGA+RTGR++G + Q QNLP+ + + I+ Sbjct: 331 SVKKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRN 390 Query: 341 --TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T++ L E I D L S +R+ + G K +VAD + IEARVL+W+AGE W+ Sbjct: 391 GDVETLEMLY--EDIPDTL---SQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWR 445 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 K FA+G DIY + ++ F P++K V+ R GK+ ELALGY G K M Sbjct: 446 TKVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG---- 501 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A++ L + + AWR + Sbjct: 502 ------------------------------------ALEMGLEEEELKPLVNAWRMSNPN 525 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 + Q W D+ V+E S + + IVLPS RRL Y + G Sbjct: 526 ITQFWWDVDRAAKQCVKENKSQETHSIE------FHCFSGMLFIVLPSGRRLAYVKPRIG 579 Query: 576 DCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + + T + R +YG K ENIVQAISRDIL MK+ Y IV Sbjct: 580 ENQFGGESVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSLRH--YRIVAH 637 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ ET P SV +C M++ P WAKGL L A+GYE Y+K Sbjct: 638 VHDEVIIET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683 >gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] Length = 666 Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 230/721 (31%), Positives = 328/721 (45%), Gaps = 108/721 (14%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58 KL+IDIET S + G++ YAE + L AYA DD V+L D T+ + L Sbjct: 5 KLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLVG 64 Query: 59 --QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + AHN+ FE K+ L I I RW CT V G P+SL+ AL Sbjct: 65 VRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEAL 124 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRD 166 + E K+ GKALI FCK P T+ N H + W+LF EYCKRD Sbjct: 125 DMPEDKAKLRTGKALINYFCK------PCKPTKTNGGRTRNLPKHASEKWELFREYCKRD 178 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 VE RE+ K L + G W+ D +N RG +D LV + I E K D +K Sbjct: 179 VEVAREIDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALV-EAAIAIDGEVKSAHLDTIK 237 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 G+ + L +L ++ ++ ++K++L S++T A+ ++ Sbjct: 238 RITGVDNPRSRAQVLD-WLNDTLDEEITSLNAASVKALLE-SDLTDDARAVLTAWQGLGK 295 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ K TL A D R+RG LQFYGASRTGRW+G + QP NLPR + L Q + Sbjct: 296 TSTKKYETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYN--LNQAGEL 353 Query: 347 LNRGE---------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + G ++ + L S +R+C + G K V+ D + IEARVLAW+AGE W Sbjct: 354 VKAGHKKDIELLHGSVPNTL---SGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHW 410 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMA 452 ++ F IY T A+ +N + K R GK+ LALGYQG + M Sbjct: 411 VLEEFKGDGKIYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMG 470 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + S F D D+L G + +AWR Sbjct: 471 A--------------SEDEFTD---------------------DELRG-----LVRAWRV 490 Query: 513 KHQGVLQLWK--------DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + + +LW+ +++ F IS + N + ++ I LPS Sbjct: 491 ANPCIAELWRYTEMMAKSTVSDEFYSGTNPMIPISFKSTLNAVNGI------NLAIGLPS 544 Query: 565 SRRLVYSD---VKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 R L Y + V G Y + + +E+TYGGKL ENIVQAI+RD+L + + TK Sbjct: 545 GRELYYHNPVIVDGAIYYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTL 604 Query: 621 -----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAEGYEAKRYR 674 IVL VHDE+V E V L + + PSWA+GLPLK E + + Y+ Sbjct: 605 VVGGINAHIVLHVHDEVVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYK 664 Query: 675 K 675 K Sbjct: 665 K 665 >gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6] gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6] Length = 645 Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 217/709 (30%), Positives = 334/709 (47%), Gaps = 99/709 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIE+ S + K G + Y+E + I L AY+ D +PV++ D + +P D++ Sbjct: 1 MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L DETV+ A N+ FER+ + LG++ + + W CT V A T GLP SL L Sbjct: 61 KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----------VQAWQLFGEYCKRD 166 + K+ EGK L+ FC P + T+ N + W+ F Y RD Sbjct: 121 GLDKQ--KLSEGKDLVRYFCM------PCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRD 172 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 VE + ++L P++ + + LDQ INDRG ID+ L L + +++E + Sbjct: 173 VEVEVAIQQKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQL 232 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 KLT + + +R +L G+++ + + +K ++ +N +L K+++L R Sbjct: 233 KKLTG--LENPNSVLQMRSWLSQ-HGLEVESLGKAAVKELIEQTNDDKL-KEVLLLRQQL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + S++ K + D R RG QFYGA+RTGR++G Q QNLP+ S+ L + Sbjct: 289 AKSSVRKYQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSD--LAEAR 346 Query: 345 QALNRGE-----TIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + + GE + D + + S+ +R+ I G K +V+D + IEARV+AW+AGE W+ Sbjct: 347 ELVRNGEYELLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWR 406 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HC 455 + F NG DIY + ++ F P++K V+ R GK+ ELALGY G M + + Sbjct: 407 KEVFRNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMGALNM 466 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 GL + V S WR + Sbjct: 467 GLTEDELQPLVAS-----------------------------------------WRETNP 485 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 + +LW D+ V G + + I L S RRL Y + Sbjct: 486 AITKLWWDIDSAAKGCVSVGAKTETHGI------TFEYKSGFMFIQLLSGRRLAYVKPRI 539 Query: 575 GDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 G + A T + R +YG K ENIVQA++RDILC M+N Y IV Sbjct: 540 GQNRFGGAAVTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNLKD--YRIVG 597 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ E P +V + S+M++ P+WAKGL L A+GYE Y+K Sbjct: 598 HVHDEVIIEVPKE--VTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644 >gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] Length = 645 Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 223/707 (31%), Positives = 328/707 (46%), Gaps = 95/707 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ Y+E I L AY+ D PV++ D +P+++L Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L DETV+ A N+ FER+ + LG+D + + W CT V T GLP SL L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRD 166 + K+ EGK LI FC P + T+ N + W F Y RD Sbjct: 121 GLDKQ--KLTEGKDLIRYFC------VPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRD 172 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 VE + +L P+ D + LDQ INDRG ID D V +L + L++ + Sbjct: 173 VEVEIAIQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQL 232 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +LT + + +R +L L G++ + + + +L L + L+L R Sbjct: 233 QELTG--LENPNSVLQMRGWL-LDHGLETESLGKKAVAELLEQPIDENLKQVLVL-RQQL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + S++ K + SD R RG QFYGA+RTGR++G Q QNLP+ S+ +++ Sbjct: 289 AKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSL 348 Query: 345 QALNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E + G + S+ +R+ + G K +V+D + IEARV+AW++GE W+ + Sbjct: 349 VKQSNFEMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQE 408 Query: 401 AFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-ASHCGL 457 F NG DIY + ++ F P++K V+ R GK+ ELALGY G K M A GL Sbjct: 409 VFKNGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMDALEMGL 468 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + V S WR + + Sbjct: 469 TEDELQPLVNS-----------------------------------------WRDSNINI 487 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GD 576 +LW + + V+E RR + + + I L S R+LVY K G+ Sbjct: 488 TELWWAVDKAVKTCVKE------RRSTSTHGIKFEYKSGFLFIQLLSGRKLVYVKPKIGE 541 Query: 577 CSYLNT--------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + AT + R +YG K ENIVQAI+RDILC M+N K Y IV V Sbjct: 542 NKFGGEAVTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLRK--YRIVGHV 599 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE++ E P V +C LM++ P WA+GL L A+GYE + Y+K Sbjct: 600 HDEVIIEVPMES--KVEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644 >gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] Length = 646 Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 227/704 (32%), Positives = 326/704 (46%), Gaps = 88/704 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D V++ D A+PS ++ Sbjct: 1 MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+ V A N+ FERI K LG+ + W CT V + GLP SL+ Sbjct: 61 DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120 Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170 L + K+ EGK LI F CK ++ + H W F Y RDVE Sbjct: 121 VLGLEKQ--KLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++L P+ +G + LDQ INDRG +D+DLV + E+ + R KL I +LT Sbjct: 179 MAIQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G++ + + + +L ++ L K L L R + + S+ Sbjct: 239 E--LENPNSVVQMKQWLS-DHGLETDTLGKKAVVELLKTAS-EPLGKVLEL-RQSLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + V +DGR RG QFYGA+RTGRW+G + Q QNLP+ + L Q + Sbjct: 294 VKKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPD--LEQARSLVR 351 Query: 349 RG-----ETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 G E + D + + S+ +R+ + G K +VAD + IEARV+AW+AGE W+ + F Sbjct: 352 SGNFAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVF 411 Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +G DIY + ++ F+ P++K V+ R GK+ ELALGY G K M + + Sbjct: 412 ESGGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLEE 471 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + Q + S AWR+ + +++L Sbjct: 472 EELQPLVS----------------------------------------AWRSSNPKIVRL 491 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------ 574 W D+ V+E R + I LPS RRL Y + Sbjct: 492 WWDIDRAAMKAVRE------RTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRF 545 Query: 575 -GDCSYLNTATSQLMRER--TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 DC ER +YG KLTENIVQA SRDILC M+N IV+ VHDE Sbjct: 546 GSDCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNLRH--CSIVMHVHDE 603 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV E S +C M + P WAKGL L+A+GYE Y+K Sbjct: 604 IVIEADRR--MSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645 >gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] Length = 655 Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 225/711 (31%), Positives = 327/711 (45%), Gaps = 93/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIE+ S L K GV+ YAE + L Y+ D P+++ D ++P ++L Sbjct: 1 MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109 L D +V+ AHN+ FER+ L P ++W CT + + GLP SL Sbjct: 61 AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKR 165 L + K GK LI +FC + S R N A W F +Y +R Sbjct: 121 DAVATVLKLD--VQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 179 DVEVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLAR 238 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 LT + + L+ +L G L +++ + + L + T K+++ R Sbjct: 239 AQTLTG--LENPNSPIQLKQWL-ASRGCVLDSLAKAEVDAALDTA--TGTVKEVLGLRGD 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR-------QERS 336 + S++ K + SDGR RG +QFYGA RTGR++G + Q QNLPR Q R+ Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353 Query: 337 EEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 + T ++AL E++ D L S +R+ I S G + +VAD + IEARV+AW+AGE Sbjct: 354 L-VRTGNLEALELLHESVPDTL---SQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGE 409 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++AF G+D+Y T ++ F P++K V+ E R GK+ LA G+ G + M + Sbjct: 410 TTTLQAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMGA 469 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L + +K + AWRA Sbjct: 470 ---LTMGLAEHELKP-------------------------------------IVDAWRAA 489 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + ++ LW + E + SI R L + I LPS RRL Y Sbjct: 490 NPHIVALWAGVEEAAIAAIASRQSIRLR------NLRFSVEAGILFIELPSGRRLAYVKP 543 Query: 574 K-GDCSYLNTATSQLMRE--------RTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + G+ + T+ + TYGGKLTENIVQAI+RD+L GM K G+ I Sbjct: 544 RLGENRWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQI 603 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ VHDEIV + P+ F+ C LM+ P+WA+GLPL A+GYE YRK Sbjct: 604 VMHVHDEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016] gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 644 Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 225/711 (31%), Positives = 331/711 (46%), Gaps = 104/711 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ + IDIET S L K GV+ YAE I L Y+ D V++ D +P++++ Sbjct: 1 MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D +V A N++FER+ K L + + W C+ V + GLP SL+ L Sbjct: 61 NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRD 166 + K+ EGK LI FC P T++N + W+ F Y RD Sbjct: 121 GLEKQ--KLTEGKDLIKYFCT------PCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRD 172 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 VEA + +RL P+ + + LDQ INDRG ID+ V + ++ Q R+KL + Sbjct: 173 VEAEMSIQQRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALM 232 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +T+ + + ++ +L G++ + + + +L + L L L R Sbjct: 233 QDITN--LENPNSIQQMKEWL-ADNGLETDSLGKKAVAEMLKTAP-EPLGTVLEL-RQQL 287 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + S+I K + AV +DGR RG QFYGA+RTGR+SG + Q QNLP+ + + Sbjct: 288 AKSSIKKYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD---LEQA 344 Query: 345 QALNRGETIADPLGLA--------SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +AL R D L L S+ +R+ + G K +VAD + IEARV+AW+AGE Sbjct: 345 RALVRSGNF-DALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEK 403 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS- 453 W+I F NG DIY + ++ FN P++K V+ R GK+ ELALGY G K+M + Sbjct: 404 WRIDVFQNGGDIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMGAL 463 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G++ ++ V AWR Sbjct: 464 EMGIEEEELQPLV-----------------------------------------TAWRQS 482 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY--- 570 + + +LW D+ V++ + + + M + IVLPS RRL Y Sbjct: 483 NPNITKLWWDVDHAVKTCVKQKIPTETHGIKFIYQSGM------LFIVLPSGRRLSYVKP 536 Query: 571 ---SDVKGDCSYLNT---ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 +V G S T + R +YG K ENIVQAISRDILC M+ T I Sbjct: 537 RMGENVFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSI 594 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDEI+ E S+ T+C M + P+WA GL L A+GYE + Y+K Sbjct: 595 VAHVHDEIIIEA--DMRMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643 >gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 649 Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 228/710 (32%), Positives = 322/710 (45%), Gaps = 97/710 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET SP L GV+ YAE I L Y+ D P K+ D +P +L Sbjct: 1 MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109 Q L D TV A N+ FER+ L P + W CT V A + GLP SL Sbjct: 61 QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRD 166 A AL + K G+ LI RF SI P D R ++ WQ + Y +RD Sbjct: 121 DGAAKALRLP--IEKDPAGQKLIRRF---SI--PGKDGIRVLPSDDPVGWQQYISYNRRD 173 Query: 167 VEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 V+ +L RL P+ + E + + LDQ IND G RID L E+ ++ R Sbjct: 174 VDVEVQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARA 233 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +LT + + L+ +L G +L +++ +++ L +T +++ R Sbjct: 234 QQLTG--LENPNSPIQLKDWL-AAHGCELESLTKTEVEAALE--TVTGDVAEVLRLRQDL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 S S++ K + SD R RG +Q+ GA RTGR++G + Q QNLPR + L Sbjct: 289 SRSSVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPD--LASAR 346 Query: 345 QALNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 LN G E + PL S +R+ I S + +VAD + IEARVLAW+AGE+ Sbjct: 347 SLLNAGNSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGT 406 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HC 455 ++AF G+D+Y T ++ F P++K + E R GK+ LA GY G K M + Sbjct: 407 LQAFREGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMGALRM 466 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 GLD + V AWR + Sbjct: 467 GLDESELKPLV-----------------------------------------DAWRDANP 485 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 V+Q W D+ + V+ R V R+ + + I LPS R L Y + Sbjct: 486 MVVQFWHDIEQAAITTVE------TRTPTQVGRIHLSYRSGCLFIALPSRRELCYPRPRL 539 Query: 575 -----GDCSYLNTATSQLMRE----RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 G S L R+ TYGGKLTEN+VQA +RD+L M + G+ IV Sbjct: 540 GENRFGMTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIV 599 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + +HDEIV + P T SV + +LMT+ P+WA GLPL A+GYE Y K Sbjct: 600 MHIHDEIVVDEP-TDGASVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648 >gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 658 Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 219/702 (31%), Positives = 327/702 (46%), Gaps = 90/702 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L +D+ET S L + GV+ Y + I LC+Y+ DD V D +P +++ Sbjct: 19 VKSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVV 78 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D +V+ A+N+ FER LG + W CT V A T GLP SLK+ L Sbjct: 79 AALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGL 138 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + K+ EGK LI F K I P D + AW LF +Y RDVE + + Sbjct: 139 AHQ--KLAEGKDLIKYFSLPTKTGIRHQPSDDS-----AAWALFKQYNARDVEVETTIRR 191 Query: 176 RLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L P+ D + +DQ INDRG ID L + RK+ +LT + Sbjct: 192 KLSHHPVPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LD 249 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L+ +L G + M++ + S L + T ++ + R S S++ K Sbjct: 250 NPASPLQLQSWL-AEQGCKISSMAKEDVDSALDTA--TGSVREALELRQDLSKSSVAKYR 306 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-- 351 +++A +DGR G LQFYGASRTGRW+G + Q QNLPR + L Q ++ G+ Sbjct: 307 KMADATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPD--LAQARSLVHYGDFD 364 Query: 352 -------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ D L S +R+ I S + +VAD + IEARVLAW+AGE+ + AF N Sbjct: 365 VLEMLYPSVPDTL---SQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTN 421 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GED+Y T + F P++K + E R GK+ LA GY G K M Sbjct: 422 GEDLYCATASAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG---------- 471 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+K L + + + AWRA + ++ +W Sbjct: 472 ------------------------------ALKMGLTASELQPIVDAWRAANPNIVAMWH 501 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLN 581 D+ + +Q +I+ R + L K + I LPS RRL Y G + Sbjct: 502 DVDQ---TAIQ---AITTRSTVTLGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGG 555 Query: 582 TATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T+ + + + TYGGKL ENIVQA +RD+L E + G+++V+ +HDE+V Sbjct: 556 TSITYWGQGINRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVV 615 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + +V +C+LM + P+WA GLP+ A GY+ Y K Sbjct: 616 VDESKDSGTTVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657 >gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] Length = 662 Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 230/735 (31%), Positives = 330/735 (44%), Gaps = 134/735 (18%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D VK+ D + +P +L+ Sbjct: 1 MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60 Query: 59 QYLRDETVMCVAHNSLFERIL---FKKTLGIDIP-----------------SKRWICTSV 98 L D++++ A N+ FER+ + + LGI + S+ W C+ V Sbjct: 61 DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN------- 151 A T GLP SL+ L + K+ EGK LI F S P T+AN Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQ--KLTEGKELIKYF------SVPCAPTKANGGRTRNR 172 Query: 152 ---HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + W F Y RDVE + RL P+ + + +DQ INDRG RID+DLV Sbjct: 173 PFHDPEKWDAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLV 232 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 + E+ + R +L I K+TD + + ++ +L G++ + + + ++ Sbjct: 233 TEAIEMDTRSRTELTSAIKKMTD--LENPNSVQQMKQWLS-NNGLETDSLGKKVVAELIK 289 Query: 267 HS-----NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 + N+ +L + L + S++ K T+ AV DGR RG FYGA+RTGRW+ Sbjct: 290 TAPPELQNVLELRQQL-------AKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWA 342 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRG---------ETIADPLGLASDCVRSCIIASN 372 G + Q QNLP+ E L + G E + D L S +R+ I + Sbjct: 343 GRLIQLQNLPQNHL--EDLADARALVKSGDFDAVKLLYEDVPDTL---SQLIRTAFIPKS 397 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRA 430 + V+D + IEARV+AW AGE W+ K FA G DIY + ++ F+ P++K ++ R Sbjct: 398 DTQFYVSDFSAIEARVIAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQ 457 Query: 431 IGKVMELALGYQGGAKVFKTM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 GK+ ELALGY G K M A GL +D+ Sbjct: 458 KGKIAELALGYGGSIGALKAMGAIEMGLS---------------------------EDEL 490 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 P AWR + +++ W D+ V+ + S + R Sbjct: 491 PPLV--------------DAWRQTNPNIVKFWWDVDRAVMEAVKHKHTTSCYGLTFSCRS 536 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNTATSQLMRER--TYGGKLTEN 600 M + I LPS R L Y K G+C S ER +YG K EN Sbjct: 537 GM------LFITLPSGRNLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVEN 590 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQA SRDILC MK T +IV+ +HDE+V E P S+ LC M + P WA+G Sbjct: 591 IVQATSRDILCYAMK--TLRNCEIVMHIHDELVIEA--DPCMSLDVLCEQMGRTPPWARG 646 Query: 661 LPLKAEGYEAKRYRK 675 L L+A+GY Y+K Sbjct: 647 LKLRADGYTCPFYKK 661 >gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] Length = 649 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 225/702 (32%), Positives = 329/702 (46%), Gaps = 90/702 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L DIET S L K GV+ Y A+ I L AY+ D VK+ D +P +L L Sbjct: 7 LHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLILSAL 66 Query: 62 RDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACLALN 117 D+ V+ AHN+ FERI F + LG I + W CT A GLP SL L Sbjct: 67 EDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGAVLG 126 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-----QAWQLFGEYCKRDVEATRE 172 + KM EGK LI FC G + R ++ + W+ F Y RDVEA E Sbjct: 127 LGKQ--KMTEGKDLIRFFC-GPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAEME 183 Query: 173 LFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++LI P+ D D + L + IND G ++D+D V + + KL + + ++T+ Sbjct: 184 IEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEITE- 242 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + ++ +L G++ + + + +L + LA+ L L R + S++ Sbjct: 243 -LDNPNSVQQMKDWLS-DNGLETDTLGKKAVAELLKDAP-EHLAEVLKL-RQQLAKSSVK 298 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + AV SDGR+RG F GA+RTGR+S + Q QNLP+ + L + + G Sbjct: 299 KYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMD--LKEARSIVKNG 356 Query: 351 ETIA------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ++ A D S +R+ + G K +VAD + IEARVL+W+AGE W+ + FAN Sbjct: 357 DSEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFAN 416 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K V+ R GK+ ELALGY G K M Sbjct: 417 GGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMG---------- 466 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L + + AWRA + +++ W Sbjct: 467 ------------------------------ALEMGLEEEELKPLVNAWRASNPNIVKFWW 496 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------SDVKGD 576 D+ ++E S + V N+ M + IVLPS R+L Y ++ G Sbjct: 497 DVDREVKKCIKEKKS---QEVQNIKFHYMSGM---LFIVLPSGRKLAYVKPNIGENIFGG 550 Query: 577 CSYLNT---ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 S AT + R +YG K ENIVQAISRDIL MK T + IV VHDE++ Sbjct: 551 ESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMK--TLSTCSIVAHVHDEVI 608 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E + S+ +C M + P WAKGL L A+GYE Y+K Sbjct: 609 IEADQS--LSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648 >gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] Length = 653 Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 217/706 (30%), Positives = 321/706 (45%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA+ I + AY+WD PV++ D + +P +++ Sbjct: 1 MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A+N+ FE + P ++W CT V G + L AL Sbjct: 61 EALADPAVVKHAYNAAFEWYCLNRFF--YSPIEQWRCTQVHGLYCGYTAGLGAVGEALGI 118 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV----------QAWQLFGEYCKRDVE 168 + K+ G +LI FC P TR N + + W+LF EYC DV Sbjct: 119 PQDKRKLGTGGSLIRTFCI------PCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVV 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 A E+ +RL P+ D E LW LDQ IN RG DL +V + Q +L + + Sbjct: 173 AEMEIQRRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAIS 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + + L +L TG ++ ++ +GT+ ++ + + A+ ++ R S Sbjct: 233 LTG--LDNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLDEGK-ARRVLEIRQELSK 289 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ K + A SD R+RG LQFYGA+RTGRW+G + Q QNLPR S + + Sbjct: 290 TSTKKYAAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVV 349 Query: 347 LNRGETIADPLGLASDC----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + E + G D +R+ + GK+L VAD + IEARV+AW+AGE W++ F Sbjct: 350 ERKVEMLKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVF 409 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A IY + ++ F PI+++ K + R GKV ELALGYQGG M + Sbjct: 410 ATHGKIYEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMGA------- 462 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 Q + + PE + WR ++ ++ L Sbjct: 463 -LDQGLTEA------------------ELPEIVTR--------------WRNANRRIVDL 489 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH-IVLPSSRRLVYSDV------ 573 W + E A V E G R R K+D I LPS R+L Y+ Sbjct: 490 WYSM-EAAAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLREND 548 Query: 574 --KGDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 K Y ++ + + TYGGKL EN VQAI+RD L + GY IVL VH Sbjct: 549 FGKPALHYWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVH 608 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+ +E + + +M + WA GLPLK +G+ Y K Sbjct: 609 DEVGAELSSAD--ELDRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652 >gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31] gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31] Length = 656 Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 220/710 (30%), Positives = 335/710 (47%), Gaps = 90/710 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA + I L AY+ D + VK+ D + A+P ++L Sbjct: 1 MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+DET + A+N++FE GI+ P ++W CT V G + L A+ Sbjct: 61 DLLKDETCIKYAYNAVFEWWCLNMA-GIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVE 168 + K+ G ALI FC P + T++N H + W+LF EYC +DV Sbjct: 120 PQDKKKLTTGSALIRYFC------IPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVV 173 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E+ +RL P+ + E LW+LD +N G R+D +LV + A R L E+ Sbjct: 174 TEMEIGRRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARD 233 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +T + + T L +L G ++ ++ + T+ ++ + + AK ++ R S Sbjct: 234 ITK--LDNPNSTSQLLNWLEE-AGEEVENLQKATVGKMIDTLDDGK-AKRVLEIRQELSK 289 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K + EA+ D R+RG LQFYGA+RTGR++G + Q QNLPR + + + Sbjct: 290 TSVKKYKAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIK 349 Query: 347 LNRGETIADPLGLASDC----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 GE + G D +R+ I S G VV+D + IEARV+AW+AGE+W+++ F Sbjct: 350 KGDGELLEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVF 409 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTM-ASHCG 456 IY + ++ F PI+ ++K + RA GKV ELALGYQG M A+ G Sbjct: 410 KTHGKIYEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAADMG 469 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 L ++ M+D + WR + Sbjct: 470 LTDEE-----------------------MKD------------------IVDRWRKSSKR 488 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV-LPSSRRLVY----- 570 +++LW L E A V E G + + + + +D + LPS R+L Y Sbjct: 489 IVELWYAL-ENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFL 547 Query: 571 -----SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 ++ +N T + TYGGKLTENIVQAI+RD L E + G+ IV Sbjct: 548 KENQFGQMQMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIV 607 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEI+ + P + + + MT+ SWAKGL L A G+ Y K Sbjct: 608 FHVHDEIILDVPKS--VELEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655 >gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] Length = 645 Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 222/715 (31%), Positives = 326/715 (45%), Gaps = 114/715 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YA + L YA D V + D +P + + Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D +V N++ ER+ LG + + W CT V + T GLP SL++A AL Sbjct: 64 SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVE 168 + K+ EGK LI FC P T+AN H + W+ F Y RDVE Sbjct: 124 EKQ--KLTEGKDLIRYFCV------PCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVE 175 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ KRL P+ D + + LDQ INDRG +D++LV + + + R++L + + Sbjct: 176 TEMQIQKRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRE 235 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-------DLIL 279 LT+ + + ++ +L G L + +L K +++ Sbjct: 236 LTE--LENPNSAQQMKQWL----------ADHGLETDTLGKKAVAELVKTAPEPLREVLS 283 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ------ 333 R + S++ K + AV +D R G QFYGA+RTGR+SG + Q QNLP+ Sbjct: 284 LRQQLAKSSVKKYTAMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLA 343 Query: 334 ERSEEILTQTIQALN-RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 E + + +AL+ E I D L S +R+ + +G+K +VAD + IEARV+AW Sbjct: 344 EARALVRSGNYEALSVLYEDIPDTL---SQLIRTAYVPQDGRKFIVADFSAIEARVIAWF 400 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKT 450 AGE W++K F +G DIY + ++ F+ P++K V+ R GK+ ELALGY G K+ Sbjct: 401 AGERWRLKVFEDGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKS 460 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M A++ L + + AW Sbjct: 461 MG----------------------------------------ALEMGLAEEELQPLVDAW 480 Query: 511 RAKHQGVLQLWKDLTEGFA-CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 R + + Q W D+ C+ Q R L + I LPS RRL Sbjct: 481 RGSNPMITQFWWDVDRAVKDCIRQ-------RIPTETHGLRFDYRSAMLFINLPSGRRLA 533 Query: 570 Y-------SDVKGD-CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 Y + G+ +Y+ + T + R +YG K ENIVQ +RDILC M+ T Sbjct: 534 YVKPRIGENQFGGESVTYMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQ--TLK 591 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDEI+ E SV +C M + P WAKGL L+A+GYE + Y+K Sbjct: 592 NCSIVAHVHDEIIIEADRR--MSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644 >gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens FD-1] Length = 654 Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 222/716 (31%), Positives = 338/716 (47%), Gaps = 104/716 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S + + + GV+ YAE + L +Y+ D PV D +P ++L Sbjct: 1 MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60 Query: 59 QYLRDETVMCVAHNSLFERIL--------------FKKTLGIDIPSKRWICTSVLARTNG 104 L D++V+ A N FER+ F+ +G I + W C + +R G Sbjct: 61 SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP----YDCTRANHVQAWQLFG 160 + SSL + + K++EGK LI FC D YD +++ + W+ F Sbjct: 121 MMSSLDD--MGKLLRLKEKKLDEGKDLIKYFCTLHQDKQGNLLFYD--KSDAPKKWKEFI 176 Query: 161 EYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 EY +RDVE ++ + L +P+ D + + +DQ INDRG +D K EL + +K Sbjct: 177 EYNRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKK 236 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +L + +LT R +M +L+ GI+ + + ++ +L+ + K++ Sbjct: 237 ELFPKLKELT----RLDNPNSPAQMKDWLMRQGIEADSLDKKSMPLLLASA--PDDVKEV 290 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ S S++ K +T+ A DGR RG FYGA+RTGR++G + Q QNLP+ Sbjct: 291 LMLYQQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDN 350 Query: 338 EILTQTIQALNRG------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 L +T + G E D + S +R+ I GKK VVAD + IEARV++W Sbjct: 351 --LAETKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISW 408 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFK 449 +AGE W+++AFANGEDIY AK F P++K V+ R GK+ ELA GY G K Sbjct: 409 LAGETWRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIK 468 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 M E + D + + E Sbjct: 469 AMGG------------------------------------TELNLTDDELYSLVE----D 488 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR +++LW D+ V+ + S++ R+ + + + I LPS RRL Sbjct: 489 WRKTSPNIVKLWSDVQSVAVKVITDQSSMTFGRLKFSYEIGI------LFIELPSGRRLA 542 Query: 570 Y--------SDVKGDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 Y + K +Y + + +R TYG KL ENI Q I+RD+L M A Sbjct: 543 YVRPKVEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSM--AAMK 600 Query: 621 GYDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DIV VHDE++ E PDT +V +C LM + P WA+GL L+A+GYE + Y K Sbjct: 601 DMDIVGHVHDEVIVECDPDT---TVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653 >gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 216/711 (30%), Positives = 333/711 (46%), Gaps = 104/711 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 K+ GK L+ FC P T+AN + WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 E+ ++L P+ E + + +DQ INDRG RID LV +K Q + + + ++ Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ +L GI +S+ ++ +L + T + + L L +L Sbjct: 233 LTGLAN-----PNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT-VHQVLALRQLL 285 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338 S S++ K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR E + E Sbjct: 286 SK-SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARE 344 Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++ Q + AL +++ D L S +R+ I S VAD + +EARV+AW++ E Sbjct: 345 LVKQGNVPALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEK 401 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-AS 453 W+ ++FA EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M A+ Sbjct: 402 WRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT 461 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 GL D+ P + WR Sbjct: 462 KLGL---------------------------TDDELPPLV--------------QMWRNA 480 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++Q W D+ + +E + + + + R + + L S R L Y Sbjct: 481 SPHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYRSGC--MFLRLRSGRYLCYPQP 534 Query: 574 KGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 K + + + M R TYG KL ENIVQA SRD+L E M+ G + Sbjct: 535 KIGINRFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTV 594 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ +HDE V + P S+ T+ LMTK P WA GL L A G+ + Y+K Sbjct: 595 VMHIHDEAVIDAPFNR--SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643 >gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 643 Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 227/713 (31%), Positives = 334/713 (46%), Gaps = 109/713 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA EQ I L AY++D E V++ D +P +L Sbjct: 1 MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+D V+ A+N+ FE GI P +W CT V A LP+ L N AL Sbjct: 61 TALQDMEVIKHAYNAAFEWYCLN-CAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177 +E K GK LI FC PY + + V+ W+ F EY ++DV + E+ RL Sbjct: 120 AEDKKKSAVGKQLIRYFC-----VKPY---KPDAVK-WKAFKEYNRQDVVSEMEIENRLS 170 Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDEDIVKLTDGIIR 233 P+ + E + W D +N G ++D +LV +K+QE Q ++L + V+LT + Sbjct: 171 GFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQE---QCEEELLNEAVRLTQ--LE 225 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L ++ G L + + T++S L ++ + L + R +++ K Sbjct: 226 NPNSPTQLLNWVN-AQGYPLENTQKATIESALKEDLPLKVRRVLEI-RQQLGKTSVKKYE 283 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-- 351 ++ + R+RG QFYGAS+TGR+SG + Q QNLPR E L +T + + R + Sbjct: 284 AMTNTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYL--EPLAETRECVKRQDYE 341 Query: 352 -------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +I D L S +R+ I S G + VVAD + IEARV+AW+A E W + FA Sbjct: 342 TLKLLFDSIPDTL---SQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFAT 398 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMAS-HCGLD 458 IY T ++ F+ PI+K++K R GKV LALGYQGG +M + GL Sbjct: 399 HGKIYEATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMGALKMGLS 458 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +++ PE + WRA +Q ++ Sbjct: 459 ---------------------------EEELPEIVTR--------------WRAANQRIV 477 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK------RDVHIVLPSSRRLVY-- 570 LW + V++G R V L+ R + R + I LPS R+L Y Sbjct: 478 ALWSAVGSYALRTVRDG------RARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCK 531 Query: 571 -----SDVKGDCSYL---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 + G+ Y N T + T+GGKL ENIVQ I+RD LCE + T GY Sbjct: 532 PYIGLNQFGGESLYFYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGY 591 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ + +V LC +M + WAKGL LK G+ + Y+K Sbjct: 592 RIVFHVHDEVIVDAGMD--LTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642 >gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 646 Score = 276 bits (706), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 227/717 (31%), Positives = 332/717 (46%), Gaps = 114/717 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LPK GV+ Y E I L AY+ D +PV++ D +P +++ Sbjct: 1 MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+TV+ A N+ FERI + LG + + W C+ + A T GLP SL+ Sbjct: 61 AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCK 164 L + K+ EGK LI FC+ P T+AN + W+ F Y Sbjct: 121 VLGLEKQ--KLTEGKDLIKYFCQ------PCAATKANGGRTRNRPFHAPDKWEAFKRYNI 172 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + +L P+ + + + +DQ INDRG R+D++LV + + + R++L Sbjct: 173 RDVETEMGIQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTA 232 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 I +T+ + + ++ +L GI+ + + + +L + LA D++ R Sbjct: 233 AIKDMTE--LENPNSVQQMKQWLS-DNGIETDSLDKKAVAELLKDAP-DNLA-DVLTLRQ 287 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + + V SDGR RG QFYGA+RTGR+SG Q QNLP+ + L++ Sbjct: 288 QLAKSSVRKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPD--LSE 345 Query: 343 TIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + G E + D L S +R+ I VAD + IEARV+AW A Sbjct: 346 ARSLVRSGDFDGVELLYEDVPDTL---SQLIRTAFIPRENALFYVADFSAIEARVIAWFA 402 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM 451 GE W+ + F G DIY + ++ F P++K ++ R GK+ ELALGY G K M Sbjct: 403 GESWRQQVFEKGGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAM 462 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHL---WMQDQYPEFAVKDKLIGTACELVK 507 + GL+ ++ V + W QA + W D+ AVK K T Sbjct: 463 GALDMGLNEEELPALVDA------WRQANPRIVEFWWAVDRAVMEAVKYKHTTT------ 510 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 D F+C + G + I LPS R+ Sbjct: 511 ---------------DYGLTFSC---KSGML--------------------FITLPSGRK 532 Query: 568 LVYSDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 L Y K G C +Y T + R +YG K ENIVQA +RDILC MK T Sbjct: 533 LAYVKPKIGTNKFGGSCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMK--T 590 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV+ +HDE+V E P S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 591 LRCCSIVMHIHDELVIEA--DPKVSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645 >gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 647 Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 220/711 (30%), Positives = 324/711 (45%), Gaps = 104/711 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 ++ L +D+ET S L K GV+ YAE I L Y+ D V++ D +P +++ Sbjct: 4 INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D++V A N++FER+ K L + + W C+ V + GLP SL+ L Sbjct: 64 NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRD 166 + K+ EGK LI FC P T++N + W+ F Y RD Sbjct: 124 GLEKQ--KLTEGKDLIKYFCT------PCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRD 175 Query: 167 VEATRELFKRLIPLSDGERDLW---LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 VE+ + +RL E ++W LDQ INDRG ID+ V + E+ R+KL Sbjct: 176 VESEMLIQQRLSKFQVPE-NIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKL--- 231 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + L I +M +L G++ + + + +L + L L L R Sbjct: 232 -IALMQDITNLENPNSVQQMKDWLADNGLETDSLGKKVVAEMLKTAP-EPLGTVLEL-RQ 288 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + AV SDGR RG QFYGA+RTGR+SG + Q QNLP+ + L Q Sbjct: 289 QLAKSSVKKYTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD--LEQ 346 Query: 343 TIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 + G A L + S+ +R+ I G K +VAD + IEARV+AW+AGE Sbjct: 347 ARALVRSGNFDALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEK 406 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS- 453 W++ F G DIY + ++ FN P++K V+ R GK+ ELALGY G K+M + Sbjct: 407 WRLNVFQKGGDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMGAL 466 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G++ ++ V AWR Sbjct: 467 EMGIEEEELQPLV-----------------------------------------TAWRQS 485 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + + +LW D+ V++ + + + + M + IVLPS RRL Y Sbjct: 486 NPNITKLWWDVDRAVKTCVKQKTPTATHGIKFIYQSGM------LFIVLPSGRRLAYVKP 539 Query: 574 KGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + + + T + R +YG K ENIVQAISRDILC M+ T I Sbjct: 540 RMGENMFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSI 597 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDEI+ E S+ +C M K P+WA GL L A+GYE + Y+K Sbjct: 598 VAHVHDEIIIEADMG--MSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646 >gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] Length = 646 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 220/713 (30%), Positives = 322/713 (45%), Gaps = 106/713 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D VK+ D +P ++ Sbjct: 1 MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D++V A N+ FERI K LG + W C+ V + GLP SL+ + Sbjct: 61 DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCK 164 L + K+ EGK LI FC P + T+ N + W+ F Y Sbjct: 121 VLGLEKQ--KLTEGKELIKYFCT------PCNPTKVNGGRMRNLPHHDTEKWERFKAYNI 172 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVEA ++ RL P+ D D + LDQ INDRG ++D+D V K E+ R+ L Sbjct: 173 RDVEAEMQIQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMT 232 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + LT + + ++ +L GI+ + + + +++ + +++ R Sbjct: 233 KMQVLTS--LTNPNSVVQMKGWL-SDNGIETETLGKKAVAALIDE--VPDEMSEILALRQ 287 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + +V DGR+RG QFYGA+RTGR++G + Q QNLP+ E L + Sbjct: 288 KLAKSSVRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHM--EDLAE 345 Query: 343 TIQALNRGETIADPLGLASD--------CVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + G+ D L L D +R+ I + + +VAD + IEARV+AW AG Sbjct: 346 ARGLVRSGDY--DSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAG 403 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMA 452 E W+ FA G DIY + ++ F P++K V+ R GK+ ELALGY G K M Sbjct: 404 ESWRADVFAKGGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG 463 Query: 453 S-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + GL +++ PE AWR Sbjct: 464 ALEMGL---------------------------AEEELPELV--------------SAWR 482 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY- 570 + +++ W D+ ++ S + V R M + I LPS R L Y Sbjct: 483 CSNPNIVRFWWDVDSAVKKAIKSKTSTATHGVHFSCRSGM------LFITLPSGRVLSYV 536 Query: 571 SDVKGDCSYLNT--------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 G+ + +T + R +YG K ENIVQA SRDIL MK T Sbjct: 537 KPCMGENKFGGESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMK--TLRCC 594 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDEI+ E P S+ +C M + P WA+GL L+A+GYE + Y+K Sbjct: 595 SIVAHVHDEIIIEA--DPRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645 >gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 644 Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 216/711 (30%), Positives = 332/711 (46%), Gaps = 104/711 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + GV+ YA+ + L YA D PVK+ D T+ ++P ++ Sbjct: 1 MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + + + W C+ V + T GLP SL++ L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 K+ GK L+ FC P T+AN + WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 E+ ++L P+ E + + +DQ INDRG RID LV +K Q + + + + Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKK 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ +L GI +S+ ++ +L + T + + L L +L Sbjct: 233 LTGLAN-----PNSPLQLKDWLHQ-QGIKTDSLSKASVAQLLQTTTGT-VHQVLALRQLL 285 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338 S S+I K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR E + E Sbjct: 286 SK-SSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARE 344 Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++ Q + AL +++ D L S +R+ I S VAD + +EARV+AW++ E Sbjct: 345 LVKQGNVPALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEK 401 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-AS 453 W+ ++FA EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M A+ Sbjct: 402 WRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT 461 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + GL D+ P + WR Sbjct: 462 NLGL---------------------------TDDELPPLV--------------QMWRNA 480 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++Q W D+ + +E + + + + R + + L S R L Y Sbjct: 481 SPHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYRSGC--MFLRLRSGRYLCYPQP 534 Query: 574 KGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 K + + + M R TYG KL ENIVQA SRD+L M+ G + Sbjct: 535 KIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPV 594 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ +HDE V + P S+ T+ +MT+ P WA GL L A G+ Y+K Sbjct: 595 VMHIHDEAVIDAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 644 Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 215/711 (30%), Positives = 333/711 (46%), Gaps = 104/711 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ ++P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + + + W C+ V + T GLP SL++ L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 K+ GK L+ FC P T+AN + WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 E+ ++L P+ E + + +DQ INDRG RID LV +K Q + + + ++ Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ +L I +S+ ++ +L + T + + L L +L Sbjct: 233 LTGLAN-----PNSPLQLKDWL-QQQDIKTNSLSKASVAQLLQTTTGT-VHQVLALRQLL 285 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338 S S+I K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR E + E Sbjct: 286 SK-SSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARE 344 Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++ Q + AL +++ D L S +R+ I S VAD + +EARV+AW++ E Sbjct: 345 LVKQGNVPALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEK 401 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-AS 453 W+ ++FA EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M A+ Sbjct: 402 WRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGAT 461 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + GL D+ P + WR Sbjct: 462 NLGL---------------------------TDDELPPLV--------------QMWRNA 480 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 ++Q W D+ + +E + + + + R + + L S R L Y Sbjct: 481 SPHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYRSGC--MFLRLRSGRYLCYPQP 534 Query: 574 KGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 K + + + M R TYG KL ENIVQA SRD+L E M+ + Sbjct: 535 KIGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTV 594 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ +HDE V + P S+ T+ LMT+ P WA GL L A G+ + Y+K Sbjct: 595 VMHIHDEAVIDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643 >gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 650 Score = 273 bits (697), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 219/719 (30%), Positives = 337/719 (46%), Gaps = 114/719 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ETRS + K GV+ YAE I L Y+ D V++ D +P ++L Sbjct: 1 MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKK---TLGIDI-----------------PSKRWICTSV 98 L DE+V+ A N+ FER+ + LGI + W CT V Sbjct: 61 DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY-DCTRANHVQAWQ 157 + GLP SL L E KM EGKALI F +PP+ + T A W Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQ--KMNEGKALIRYF-----STPPFHEPTGAK----WD 169 Query: 158 LFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 LF Y +RDVE + KRL P+ + ++LDQ INDRG R+D+ LV ++ + Sbjct: 170 LFKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVR 229 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 ++KL + + LT + + ++ +L G++ + + ++ ++L+ N+ K Sbjct: 230 TKEKLTDRLKTLTS--LENPNSVTQMKAWL-KEQGVETESLDKKSVTALLA--NVPDPLK 284 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-- 333 +++ R + S++ K + V SDGR RG QFYGA+RTGR+SG Q QNLP+ Sbjct: 285 EVLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHL 344 Query: 334 ---ERSEEILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 E + ++ Q + AL E++ D L S +R+ I+ G+K +VAD + IEARV Sbjct: 345 ADLEYARSLVRQGSFAALELLYESVPDVL---SQLIRTAFISKEGRKFIVADFSAIEARV 401 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAK 446 L+W+A E W++ FAN DIY T + F+ + K + R GK+ EL+ GY G Sbjct: 402 LSWLAKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVG 461 Query: 447 VFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 K + G+ ++ + V Sbjct: 462 ALKAFGALESGMKEEELNPLV--------------------------------------- 482 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 AWRA + ++ W + ++E + +V + R + + + I LP Sbjct: 483 --DAWRAANPNIVDFWWAVDRATKDCIKE----RSTKVTHGIRFIYQGSM--MFIELPCG 534 Query: 566 RRLVYSDVK-GDCSYLNTATSQL--------MRERTYGGKLTENIVQAISRDILCEGMKN 616 RRL Y + G+ + + + + R +YG KL EN+ QAISRDILC M+ Sbjct: 535 RRLAYVKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQ- 593 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T DIV VHDE++ E + S+ +C M + P WA GLPL+A+G+E + Y+K Sbjct: 594 -TLRTMDIVAHVHDELIIECDER--VSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649 >gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 211/710 (29%), Positives = 326/710 (45%), Gaps = 102/710 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + G + YA+ + L YA D PVK+ D T+ +PS ++ Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 K+ GK L+ FC T+AN + WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCTSC------KPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 E+ ++ P+ E + + +DQ INDRG RID LV +K Q+ + + + Sbjct: 173 VEMEITQKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQ 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ +L G++ +++ ++ +L + T + + L L +L Sbjct: 233 LTGLAN-----PNSPLQLKNWLHQ-QGVETDSLAKASVAQLLQTTTGT-VHQVLALRQLL 285 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S S++ K + +A+ DG + G LQFYGA+RTGRW+G + Q QNLPR + L + Sbjct: 286 SK-SSVKKYQAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEA 342 Query: 344 IQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + +G T A + + S +R+ I S G VAD + +EARV+AW++GE+W Sbjct: 343 RALVKQGNTTALAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEW 402 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTM-ASH 454 + AFA EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M A+ Sbjct: 403 RQAAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGATK 462 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 GL D+ P + WR Sbjct: 463 LGL---------------------------TDDELPPLV--------------QMWRNAS 481 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 ++Q W D+ + +E + + + + R + + L S R L Y K Sbjct: 482 PHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYR--SGCMFLRLRSGRYLCYPQPK 535 Query: 575 GDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 + + + M R TYG KL ENIVQA SRD+L M+ G +V Sbjct: 536 IGINRFGSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVV 595 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + +HDE V + P S+ T+ +MT+ P WA GL L A G+ Y+K Sbjct: 596 MHIHDEAVIDAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 644 Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 222/712 (31%), Positives = 326/712 (45%), Gaps = 106/712 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ + IDIET S L K GV+ YAE I L Y+ D V++ D +P +++ Sbjct: 1 MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D++V A N++FER+ K L + + W C+ + + GLP SL+ L Sbjct: 61 NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRD 166 + K+ EGK LI FC P T++N + W+ F Y RD Sbjct: 121 GLEKQ--KLTEGKDLIKYFCT------PCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRD 172 Query: 167 VEATRELFKR----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 VEA + +R L+P + E + LDQ INDRG ID+ V Q ++ E + E Sbjct: 173 VEAEMSIQQRFSKFLVPENIWEE--YHLDQEINDRGIAIDMTFVK--QAVVMDEHSR--E 226 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ L I +M +L G++ + + + +L + L L L R Sbjct: 227 KLMALMQDITNLENPNSVQQMKDWLADNGLETDTLGKKAVAEMLKTAP-EPLGTVLEL-R 284 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S++ K + AV +DGR RG QFYGA+RTGR+SG + Q QNLP+ + L Sbjct: 285 QQLAKSSVKKYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPD--LE 342 Query: 342 QTIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 Q + G A L + S+ +R+ I G K +VAD + IEARV+AW+AGE Sbjct: 343 QARALVRSGNFDALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGE 402 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 W+I F NG DIY + ++ FN P++K V+ R GK+ ELALGY G K+M + Sbjct: 403 KWRIDVFQNGGDIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGA 462 Query: 454 -HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 G++ ++ V AWR Sbjct: 463 LEMGIEEEELQPLV-----------------------------------------TAWRQ 481 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 + + +LW D+ V++ + + + M + I LPS RRL Y Sbjct: 482 SNPNITKLWWDVDRAVKTCVKQKTPTETHGIKFIYQSGM------LFIALPSGRRLAYVK 535 Query: 573 VK-GDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 + G+ + + T + R +YG K ENIVQAISRDILC M+ T Sbjct: 536 PRMGENMFGGESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCS 593 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDEI+ E S+ +C M K P+WA GL L A+GYE + Y+K Sbjct: 594 IVAHVHDEIIIEADMGT--SLSAICEQMAKMPTWANGLLLSADGYECQFYQK 643 >gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 663 Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 213/722 (29%), Positives = 333/722 (46%), Gaps = 110/722 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L IDIET S L K GV+ Y+E + + L AY+ D V + D ++P ++L Sbjct: 4 IGTLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEIL 63 Query: 59 QYLRDETVMCVAHNSLFERILF------------------KKTLGIDIPSKRWICTSVLA 100 Q L D++V+ A N+ FER+ + ++G + W C+ + + Sbjct: 64 QALVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWS 123 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN--------- 151 GLP SL+ L E K++EGK LI FCK P T+ N Sbjct: 124 AYMGLPLSLEGVGAVLGLEEQ--KLKEGKDLIRYFCK------PCAATKVNGGRTRNLPE 175 Query: 152 HV-QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 H W+LF Y KRDVE + K+L P+ + + + LDQ INDRG +D+D+V Sbjct: 176 HAPDKWELFKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVEN 235 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + A + L + LTD + + ++ +L G+D + + + +L Sbjct: 236 AIRIDAISKATLMATMQDLTD--LENPNSVAQMKGWL-AAKGVDTDSLDKKAVIELLK-- 290 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + D++ R + S++ K + AV DGR RG QFYGA+R+GRW+G + Q Q Sbjct: 291 TVPTDVADVLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQ 350 Query: 329 NLPRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGI 384 NLP+ + + + I E + + G+ S+ +R+ I G K VAD + I Sbjct: 351 NLPQNHMEDLDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAI 410 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQ 442 EARV+A +A E W++K FA+ DIY + + F P++K + R GK+ ELALGY Sbjct: 411 EARVIAHLAKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYG 470 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 G +M + LD+ + ++ Sbjct: 471 GSVGALTSMGA---LDMGLAEEELQP---------------------------------- 493 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + AWRA + ++Q W D+ ++E + + + + M + IVL Sbjct: 494 ---LVDAWRAANPNIVQFWWDVDNAVKRAIKERTATKTHGIRFIYKSAM------LFIVL 544 Query: 563 PSSRRLVY-------SDVKGD-CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEG 613 PS RRL Y + G+ +Y T+ + R +YG K ENIVQAISRDILC Sbjct: 545 PSGRRLAYVKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYA 604 Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 ++ T + IV VHDE++ E S+ +C M + P W +GL L+A+GYE + Y Sbjct: 605 LR--TLSHCFIVGHVHDEVIIECRQDA--SLEAICEQMGRVPEWIEGLLLRADGYETQFY 660 Query: 674 RK 675 +K Sbjct: 661 KK 662 >gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 644 Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 217/707 (30%), Positives = 326/707 (46%), Gaps = 96/707 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIE+ S L K GV+ YAE I L AY+ D PV + D + +P + Sbjct: 1 MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D+ V+ A N+ FER + L I W C+ V + GLP SL+ A + Sbjct: 61 QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTGA 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 + K++EGK LI FCK P T+ N + W F Y +RDVE Sbjct: 121 DK--KKLQEGKDLIRYFCK------PCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + + ++ P+ + E ++LDQ INDRG +D V R+ L + Sbjct: 173 TEQAIQDKISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRT 232 Query: 227 LTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 LT + ++M +L G++ + + + +L + I +LA S Sbjct: 233 LT----KLENPNSVMQMKDWLAEQGVETGALDKAAVHELLKSAQGDVAEVLTIRQKLAKS 288 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR------QERSEEI 339 ++ K + + D R RG +QFYGA+R+GR++G + Q QNLP+ +E + + Sbjct: 289 --SVKKYTAMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLV 346 Query: 340 LTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 ++AL+ ++ D L S+ +R+ I + +VAD + IEARV+AW+AGE W+ Sbjct: 347 RASNLEALDMLYPSVPD---LLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWR 403 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCG 456 + FA IY + ++ FN P++++ K R GK+ ELALGY G + M + Sbjct: 404 NEVFATHGKIYEASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMGA--- 460 Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 LD+ + +K + W QA W DQ + AVK + + Sbjct: 461 LDMGVEEEELK--PLVQAWRQANPKIVQFWWAVDQAAQKAVKQRTTTS------------ 506 Query: 514 HQGVLQLWKDLTEGFACVVQEG----GSISARRVANV-PRLVMRRHKRDVHIVLPSSRRL 568 T G + Q G G S R ++ V P +V+ R+ Sbjct: 507 -----------THGISFTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGRE----------- 544 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 G C AT + R TYG KL ENIVQA+SRD+L M+ + GY IV+ V Sbjct: 545 ------GLCFEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHV 598 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE+V E + +V +C+LMT P W+ GL LKAEGY Y+K Sbjct: 599 HDEVVVEAKQ--HVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643 >gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] Length = 662 Score = 270 bits (690), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 223/727 (30%), Positives = 330/727 (45%), Gaps = 118/727 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D V + D + +P ++ Sbjct: 1 MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60 Query: 59 QYLRDETVMCVAHNSLFERIL---FKKTLGIDIPS-----------------KRWICTSV 98 L D+TV+ A N+ FER+ + + LG+ + + W C+ V Sbjct: 61 DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC----TRANHVQ 154 A T GLP SL+ L + K+ EGK LI F S+ P TR + Sbjct: 121 WAATMGLPLSLEGVGAVLGLEKQ--KLTEGKDLIKYF---SVPCAPTKANGGRTRNHPFH 175 Query: 155 A---WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A W+ F +Y RDVE + RL P+ + D + +DQ INDRG R+D+DLV + Sbjct: 176 APDKWEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEA 235 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 E+ + R +L + +T + + ++ +L G++ + + + ++ + Sbjct: 236 IEMDTRSRSELTAAMKDMT--ALDNPNSVQQMKQWLS-DNGLETDSLGKKVVAELIKTAP 292 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +L L L R + S++ K T+ AV DGR RG FYG +RTGRW+G + Q QN Sbjct: 293 -PELQTVLEL-RQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQN 350 Query: 330 LPRQERSEEILTQTIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVAD 380 LP+ + L + G E + D L S +R+ I +G + V+D Sbjct: 351 LPQNHLPD--LADARALVKSGNFDAVKLLYEDVPDTL---SQLIRTAFIPKDGTQFYVSD 405 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELA 438 + IEARV+AW AGE W+ K F G DIY + ++ F+ P++K ++ R GK+ ELA Sbjct: 406 FSAIEARVIAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELA 465 Query: 439 LGYQGGAKVFKTM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 LGY G K M A GL +D+ P Sbjct: 466 LGYGGSVGALKAMGAIEMGLS---------------------------EDELPPLV---- 494 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AWR + +++ W D+ V+ + S+ + R M Sbjct: 495 ----------DAWRQTNPNIVKFWWDVDRSVMEAVKYKHTTSSYGLTFSCRSGM------ 538 Query: 558 VHIVLPSSRRLVYSDVK-------GDC-SYLNTATSQLMRE-RTYGGKLTENIVQAISRD 608 + I LPS R L Y K G+C +Y +++ + +YG K ENIVQA SRD Sbjct: 539 LFITLPSGRNLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRD 598 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668 ILC MK T IV+ +HDE+V E P+ S+ LC M + P WAKGL L+A+GY Sbjct: 599 ILCYAMK--TLRCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGY 654 Query: 669 EAKRYRK 675 Y+K Sbjct: 655 VTPFYKK 661 >gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] Length = 726 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 210/697 (30%), Positives = 324/697 (46%), Gaps = 79/697 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S + GV Y + I L AY+ D V+L D + +P+ +L L Sbjct: 83 LSIDIETYSDNEITN-GVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKILDAL 141 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D ++ A N+ FER+ K LG+ + +W CT + A GLP+SL++ L Sbjct: 142 TDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKLKHK 201 Query: 122 LTKMEEGKALIARF---CKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKR- 176 K+ EG LI F CK + + H W F YC RDVE + + ++ Sbjct: 202 --KLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQRKV 259 Query: 177 ----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L P++ ER L++ DQT+ND+G ID +L + + + +L ++ ++T+ + Sbjct: 260 CNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN--L 317 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G + +++ K + + + ++ K ++ R SS +++ K Sbjct: 318 ENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGA--SEDVKRVLYLRSMSSKTSVKKY 375 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE- 351 ++ A SD +L LQFYGA +TGRW+G + Q NLPR + L + + N E Sbjct: 376 EAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKNDFEL 434 Query: 352 ---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 T + + S +R+ IA L V D + IEARV+AW+AGE+W++K F I Sbjct: 435 LELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGSGRI 494 Query: 409 YVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F ++ + R GK+ ELALGY+GGA K M G D S Sbjct: 495 YEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIM----GADKMGLSD-- 548 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 PE A + WR +++LW+D+ Sbjct: 549 -----------------------PEIAQ-----------IVSGWRNSSPNIVKLWRDVER 574 Query: 527 GFACVVQEGGSISARRVANVPR--LVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL- 580 +I + R+ + + L+ R+ + I LPS R L Y K Y+ Sbjct: 575 A------AKEAILSDRIIKLKQGGLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYMS 628 Query: 581 -NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-D 638 N T Q + TYGGKL ENIVQAI+RD L E + K GY+I VHDEI++E P D Sbjct: 629 QNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPTD 688 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + ++ ++A LPLK EGY Y K Sbjct: 689 ESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725 >gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725] gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725] Length = 657 Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 209/711 (29%), Positives = 325/711 (45%), Gaps = 91/711 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G++ YA + I L AY+ D VK+ D + +P ++ Sbjct: 1 MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D+ ++ A+N+ FE + G ++W T G + L A+ Sbjct: 61 EALNDKNIIKHAYNAPFEWWCLNQA-GYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119 Query: 119 SEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + K GKALI FC G + + P+ + + W+LF YC +DV Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPH-----HEPEKWELFKNYCIQDVVT 174 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDEDI 224 E++KRL P+ E++LW+LDQ IN G +ID +LV L + +++ E L E+ Sbjct: 175 ETEIYKRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAE---LTEEA 231 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +++T + + L +L TG D+ ++ +GT+ ++ + + L + R Sbjct: 232 IQVTG--LDNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLEDKEAVRVLEI-RQEL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + ++I K + EA+ DGR+RG LQFYGA+RTGRW+G + Q QNLPR + I Sbjct: 289 AKTSIKKYVAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREI 348 Query: 345 QALNRGETIADPLGLASDC----VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + + G SD +R+ + S G K VVAD + IEARV+AW+AGE W+ + Sbjct: 349 VKSQDADFLKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQE 408 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMAS-H 454 FA IY + ++ F PI+ + K R GKV ELALGY G + M + Sbjct: 409 VFATHGKIYEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMGALD 468 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 GL+ ++ V+ WR + Sbjct: 469 MGLEEKELPDVVRR-----------------------------------------WRNAN 487 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 + + LW + +++ G + + + + + + + I LPS R+L Y Sbjct: 488 KRITDLWYGIENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPH 547 Query: 575 --------GDCSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 Y +N T + + TYGGKL ENIVQAISRD L +K G Sbjct: 548 LKENRFGSNALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQT 607 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ +HDE V + P + +C LM + WA GL LKA G+E+ Y K Sbjct: 608 VMHIHDEAVIDA--DPNVDLNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656 >gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] Length = 662 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 214/713 (30%), Positives = 332/713 (46%), Gaps = 98/713 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET S L GV+ Y E + L AYA+DD+PV++ D T +P ++ Sbjct: 9 MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V+ A N+ FER KK GI +W CT+V A GLP L+ L Sbjct: 69 HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128 Query: 119 SEHLTKMEEGKALIARF---CKGSI-------DSPPYDCTRANHVQAWQLFGEYCKRDVE 168 K GK LI F CK + + PP+ + ++ W+ + Y +DV Sbjct: 129 EAQ--KDTRGKNLIKYFSVPCKPTKANGGRTRNHPPH-----HDMEKWEQYKAYNIQDVV 181 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE+ ++L P+ E DLW LDQ INDRG ++D L + + Q + L ++ Sbjct: 182 VEREVRRKLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKD 241 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVD-MSEGTLKSILSHSNITQLAKDLILNRLASS 285 +T + + L+ +L G++ D + + + ++L + + L + R Sbjct: 242 ITQ--LENPNSLTKLKEWL-AEQGLETPDGLGKEHMPTLLVQAPDEDTRRVLQI-RQELG 297 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 +++ K N ++ ++ +DGR RG LQF GA+RTGRW+G + Q QNLP+ + + L + Sbjct: 298 KTSVDKYNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNA--LWMARE 355 Query: 346 ALNRG-----ETIADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 L G E + L + S +R+ I S G + +V+D + IEAR++AW+A E W + Sbjct: 356 VLKSGDFDLLEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVL 415 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASH 454 F + IY ++ F P++ + K E RA GKV LA GYQGG M + Sbjct: 416 NVFQDHGKIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMGA- 474 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 ++ PE ++L G + K WR + Sbjct: 475 ------------------------------LKSGIPE----EELPG-----IVKRWRKAN 495 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV-LPSSRRLVYSD- 572 +++LW E V+E +R + V R+K LPS R L Y + Sbjct: 496 PRIVKLWYAAEEAALTAVRE------KRTVPLAHGVKYRYKSGTLFADLPSGRSLAYVNP 549 Query: 573 -VKGDCSY---------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 +K D ++ ++ + M RTYGG+L EN+VQAI+RD L E + Y Sbjct: 550 RIKPDPNFGKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEY 609 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+ VHDE+V + P SV + +M++ WA GLPL A G+E + Y+K Sbjct: 610 RTVMHVHDEVVLDVP-IGTGSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661 >gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] Length = 656 Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 218/714 (30%), Positives = 320/714 (44%), Gaps = 98/714 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIETRS + K G + YA+ I L AY W+++PVK+ D +P L+ Sbjct: 1 MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D V+ A+N+ FE G + P ++W CT G + L A+ Sbjct: 61 QALADPNVIKHAYNAAFEWYCLN-CAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119 Query: 119 SEHLTKMEEGKALIARFC--------KGS--IDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + K+ GKALI FC GS + P +D + W+LF EYC +DV Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDK------WELFKEYCLQDVV 173 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE+ KRL P+ + E LW +D +N G R+D DL+ + ++L ++ + Sbjct: 174 TEREILKRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAIS 233 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT +++ L +L G + ++ + T+ +L N ++ + L + R Sbjct: 234 LTG--LQNPNSAAQLLQWL-RDNGTEADNLQKATVAELLGGINPNKVRRMLEI-RQQLGK 289 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE-RSEEILTQTIQ 345 ++I K + A R+RG Q+YGA+RTGRW+G + Q QNLPR ++ + ++ Sbjct: 290 TSIKKYVAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVK 349 Query: 346 ALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 A N + D L S +R+ I S G K VVAD + IEARV+AW+AGE W Sbjct: 350 AKNYDGVRILYGNVPDTL---SQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVN 406 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMAS- 453 + FA IY T ++ F P+++++K R GKV LALGYQGG M + Sbjct: 407 EVFATHGKIYEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMGAL 466 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH--HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 GL ++ V+ W QA LW + AV + Sbjct: 467 QMGLTEEELPDIVQR------WRQANPRIKGLWYAIENAALAVMET-------------- 506 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 A+ QG+ L EG I + V LPS R+L Y Sbjct: 507 AQPQGINGL---------IFALEGDIIYGQSFLTV--------------RLPSGRKLFYP 543 Query: 572 DV--------KGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 K Y T + TYGGK+ ENIVQAI+RD L ++ G Sbjct: 544 KPFLKENRFEKMAVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKG 603 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V VHDE++ + P +V +C LM + WA GL LK G+E+ Y K Sbjct: 604 LQVVFHVHDEVIIDAPMET--TVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655 >gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] Length = 653 Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 218/717 (30%), Positives = 324/717 (45%), Gaps = 107/717 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D P+ D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 L K + GK LI F S P T+ N ++ WQ F +YC Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 RDVE + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L Sbjct: 173 IRDVEVEMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + +T + + L +L G+D+ ++ + T++ L S T AK ++ R Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKES--TGKAKKMLEIR 288 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346 Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + L + + D P L S VR+ A G +L V+D + IEARV+AW A Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451 E W++ F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + G++ + V S W Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + ++ WK AC ++ +R+ + L K + I LPS R L Y Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539 Query: 571 SDVK-GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + Sbjct: 540 PKASVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +G+ IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 597 ASGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] Length = 653 Score = 266 bits (681), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 218/717 (30%), Positives = 325/717 (45%), Gaps = 107/717 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 L K + GK LI F S P T+ N ++ WQ F +YC Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 RDVE + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L Sbjct: 173 IRDVEVEMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + +T + + L +L G+D+ ++ + T++ L + T AK ++ R Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIR 288 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346 Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + L + + D P L S VR+ A G +L V+D + IEARV+AW A Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451 E W++ F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + G++ + V S W Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + ++ WK AC ++ +R+ + L K + I LPS R L Y Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539 Query: 571 SDVK-GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + Sbjct: 540 PKASVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +G+ IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 597 ASGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 674 Score = 266 bits (680), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 230/724 (31%), Positives = 339/724 (46%), Gaps = 116/724 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L +D+ET S L K GV+ YAE I L Y+ D V++ D + +P +L Sbjct: 17 LENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 76 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL---GIDI--------------PSKRWICTSVLAR 101 L DETV A N+ FERI + L GI++ PS W CT + + Sbjct: 77 SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSS-WHCTMIWSA 135 Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------- 151 T GLP SL+N + L + K+ EGK LI FC P + T+ N Sbjct: 136 TLGLPMSLENVGIVLGLDKQ--KLTEGKNLIKYFCL------PCNPTKVNGGRTRNKYFH 187 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + W+ F Y KRDVE + ++L P+ D + LDQ INDRG ID V Sbjct: 188 DKEKWEQFKSYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESA 247 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 +L + + L ++ ++T + + +R +L G+++ + + + L Sbjct: 248 IKLDLEVKTHLMSELKRVTG--LENPNSVLQMRSWL-KKHGLEMESLGKKEVAKELKTVG 304 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +LA+ L L R + S++ K + A D R RG +FYGA+RTGR++G + Q QN Sbjct: 305 -KELAEVLRL-RQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQN 362 Query: 330 LPRQ------ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 LP+ E + ++AL E I D L S +R+ I G K +VAD + Sbjct: 363 LPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTL---SQLIRTAFIPRTGLKFIVADFS 419 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALG 440 IEARVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++K V+ R GK+ ELALG Sbjct: 420 AIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALG 479 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y G K M + LD+ +D+L Sbjct: 480 YGGSVGALKAMGA---LDMG--------------------------------LTEDEL-- 502 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + + AWR+ + V LW D+ V E S+ R N+ V + I Sbjct: 503 ---QPLVDAWRSSNPMVTTLWWDVDRAVKQCVHEHVSV---RTHNI---VFTYKSGFLII 553 Query: 561 VLPSSRRLVYSDVKGD--------CSYLNT-ATSQLMRERTYGGKLTENIVQAISRDILC 611 LPS R L Y + + +Y +T + R +YG K ENI QAI+RDIL Sbjct: 554 KLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILI 613 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M+ T Y IV VHDE + ET + SV ++C LM + P WA+GL L+A+GYE + Sbjct: 614 YAMQ--TLKEYRIVAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECE 669 Query: 672 RYRK 675 Y+K Sbjct: 670 FYKK 673 >gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30] gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30] Length = 653 Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 216/711 (30%), Positives = 327/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKG 575 ++ WK AC ++ +R+ + L K + I LPS R L Y + G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVIEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium siraeum V10Sc8a] Length = 660 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 216/727 (29%), Positives = 328/727 (45%), Gaps = 120/727 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D PV++ D +P +++ Sbjct: 1 MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKK------------------TLGIDIPSKRWICTSVLA 100 L ++ V A N+ FERI + T+G + W CT + + Sbjct: 61 AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----- 155 GLP SL+ L + K+ EGK LI FC+ P T+AN + Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQ--KLTEGKELIKYFCQ------PCAPTKANSGRTRNLPE 172 Query: 156 -----WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 W F Y RDVE + ++L P+ D + + LDQ INDRG +D+DLV + Sbjct: 173 NAPDKWASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQ 232 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 ++ + R +L + KLT + + ++ +L G+++ + + + +L + Sbjct: 233 AIDMDTRSRAELTAAMKKLT--ALDNPNSVQQMKQWLS-DNGLNVDSLGKKEVAEMLKTA 289 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 L+ +LA S ++ K + +AV +DGR RG QFYGA+RTGRW+G + Q Q Sbjct: 290 PAELQQVLLLRQQLAKS--SVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQ 347 Query: 329 NLPRQERSEEILTQTIQALNRG---------ETIADPLGLASDCVRSCIIASNGKKLVVA 379 NLP+ + L + + G E + D L S +R+ + G K +V+ Sbjct: 348 NLPQNHLPD--LAEARALVRCGDFDGVELLYEDVPDTL---SQLIRTAFVPRPGYKFIVS 402 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMEL 437 D + IEARVLAW AGE W+ + F G DIY + ++ F P++K V+ R GK+ EL Sbjct: 403 DFSAIEARVLAWFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAEL 462 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY G K M A++ Sbjct: 463 ALGYGGSVGALKAMG----------------------------------------ALEMG 482 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 L + + AWR +Q +++ W D+ ++ + + + Sbjct: 483 LSEGELQPLVTAWRNSNQNIVKFWWDIDRAAM------NAVKYHMDSEICGIKFSYKSGM 536 Query: 558 VHIVLPSSRRLVYSDVK-------GDC-SYLNT-ATSQLMRERTYGGKLTENIVQAISRD 608 + I LPS RRL Y K G+C +Y T + R TYG KL ENIVQA SRD Sbjct: 537 LFITLPSGRRLSYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRD 596 Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGY 668 ILC M+ T + I + +HDE+V E + ++ ++C M + P+WA GL L+A+GY Sbjct: 597 ILCYAMR--TLSHCFITMHIHDELVIEA--SLGVNLKSICEQMGRTPTWANGLKLRADGY 652 Query: 669 EAKRYRK 675 E Y+K Sbjct: 653 ETMFYKK 659 >gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] Length = 653 Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 216/711 (30%), Positives = 327/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKG 575 ++ WK AC ++ +R+ + L K + I LPS R L Y + G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] Length = 653 Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE+ I + AY+ D + D T+ P +D Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A] gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A] Length = 653 Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 211/713 (29%), Positives = 311/713 (43%), Gaps = 99/713 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D PV D T+ P +D Sbjct: 1 MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER+ + ++P + W CT V GLP+SL Sbjct: 61 YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 LN K + GK LI F S P T+ N + WQ F +YC Sbjct: 121 EVLNLQNQ--KDKAGKNLIRYF------SVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYC 172 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 RDVE + ++ P++ E+ W LDQ INDRG ++ L+L EL + +L Sbjct: 173 VRDVEVEMSIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELL 232 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + K+T + + L +L G+D+ ++ + T++ L ++ T AK ++ R Sbjct: 233 KQATKITG--LENPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYLKYA--TGKAKQMLEIR 288 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE---- 337 L S +++ K N + + + D R+RG QFYGA TGRW+G Q QNL + S+ Sbjct: 289 LQMSKTSVKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELN 347 Query: 338 ---EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + + + P L S VR+ A G L V+D + IEARV+AW A Sbjct: 348 IARDFIKEQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAK 407 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMA 452 E W++ F IY + A+ F P+D + K R GKV ELALGYQGG K M Sbjct: 408 EQWRLDVFNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMG 467 Query: 453 S-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + G+D + V S WR Sbjct: 468 ALDMGIDESELQGLVDS-----------------------------------------WR 486 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + ++ WK C ++ R+ L K + I LPS R L Y Sbjct: 487 KANPNIVAFWK------GCQDAAIETVRTRQTHLTHGLRFYMKKGFLMIELPSGRSLAYP 540 Query: 572 DVKGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 + + + + M + +TYGGKL ENIVQA +RD+L M G+ Sbjct: 541 KARVGENSWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGF 600 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E PD + + ++M+K WA+GL L ++G+ + Y K Sbjct: 601 SIVGHVHDEVIVEIPDGS-GGLKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652 >gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] Length = 653 Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE+ I + AY+ D + D T+ P +D Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A] gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A] Length = 650 Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 215/706 (30%), Positives = 324/706 (45%), Gaps = 95/706 (13%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P +D + Sbjct: 3 IDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + ++ + ++ WQ F +YC RDVE + Sbjct: 123 QNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T + Sbjct: 181 NKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ K Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVA--TGKAKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L + + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354 Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 D P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G++ + Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 V S WR + ++ W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSY- 579 K AC ++ +R+ + L K + I LPS R L Y + G+ S+ Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 LN S+L +TYGGKL ENIVQA +RD+L + G+ IV VH Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 604 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 653 Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL] gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL] Length = 650 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 213/706 (30%), Positives = 321/706 (45%), Gaps = 95/706 (13%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIET S + K G + Y AE I + AY+ D + D T+ P +D + Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + ++ + ++ WQ F +YC RDVE + Sbjct: 123 QNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T + Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ K Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L + + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354 Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 D P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G++ + Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 V S WR + ++ W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSY- 579 K AC ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 LN S+L +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 604 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649 >gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] Length = 653 Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 215/717 (29%), Positives = 323/717 (45%), Gaps = 107/717 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 L K + GK LI F S P T+ N ++ WQ F +YC Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 RDVE + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L Sbjct: 173 IRDVEVEMTIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + +T + + L +L G+D+ ++ + T++ L + T AK ++ R Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKRA--TGKAKKMLEIR 288 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S +++ K N + + + +D R+RG QFYGA TGRW+G Q QNL + S+ L Sbjct: 289 LQMSKTSVKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346 Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + L + + D P L S VR+ A G +L V+D + IEARV+AW A Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451 E W++ F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + G++ + V S W Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + ++ WK AC ++ +R+ + L K + I LPS R L Y Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539 Query: 571 SDVK-GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + Sbjct: 540 PKASVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +G+ IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 597 ASGFKIVGHVHDEVIVEIPKDSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 641 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 212/710 (29%), Positives = 331/710 (46%), Gaps = 105/710 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ETRS + + GV+ Y AE I L Y+ D V++ D +P ++L Sbjct: 1 MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKK---TLGIDIPSKR--------WICTSVLARTNGLPS 107 L D++V+ A N+ FER+ + LG+ ++R W CT V + GLP Sbjct: 61 DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 SL L E KM EGKALI F +PP+ + W+LF Y +RDV Sbjct: 121 SLAVVARVLGLEEQ--KMTEGKALIRYF-----STPPFHEPTG---EKWELFKSYNRRDV 170 Query: 168 EA----TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E + LFK +P S E ++LDQ INDRG +D+ V ++ A ++K+ + Sbjct: 171 EVEMAIQQRLFKYPVPQSVWEE--YVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDR 228 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + ++ +L G++ + + T+ ++L+ N++ L K+++ R Sbjct: 229 LKTLTG--LENPNSVAQMKAWL-KEQGVETESLDKKTVAALLT--NVSALLKEVLELRQQ 283 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338 + S++ K + V +D R RG QFYGA+RTGR+SG Q QNLP+ E + Sbjct: 284 LAKSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARS 343 Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++ Q AL E+++D L S +R+ I G+K +VAD + IEARVL+W+A E Sbjct: 344 LVRQGNFAALELLYESVSDVL---SQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKER 400 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASH 454 W++ FAN DIY T + F+ + K + R GK ELA GY G K Sbjct: 401 WRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFG-- 458 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 A++ + + + AWR + Sbjct: 459 --------------------------------------ALESGMKEDELKPLVDAWRTAN 480 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 ++ W + ++E R + + + I LPS RRL Y + Sbjct: 481 PNIVDFWWAVDRAAKDCIKE------RSITGTHGIKFIYQSGMMFIELPSGRRLAYVKPR 534 Query: 575 -GDCSYLNTATSQL--------MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 G+ + + + + R +YG KL ENI QAISRD+LC M+ T DIV Sbjct: 535 IGENQFGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQ--TLRSMDIV 592 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ E + S+ + C M + P WA+GL L+A+G+E + Y+K Sbjct: 593 AHVHDELIIECDER--VSLSSACEQMARTPLWAEGLLLRADGFECQFYQK 640 >gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 132] Length = 653 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 217/717 (30%), Positives = 325/717 (45%), Gaps = 107/717 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K GV+ Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 L K + GK LI F S P T+ N ++ WQ F +YC Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 RDVE + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L Sbjct: 173 IRDVEVEMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + +T + + L +L G+D+ ++ + T++ L + T AK ++ R Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKVA--TGKAKKMLEIR 288 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346 Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + L + + D P L S VR+ A G +L V+D + IEARV+AW A Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451 E W++ F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + G++ + V S W Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + ++ WK AC ++ +R+ + L K + I LPS R L Y Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539 Query: 571 SD-VKGDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + Sbjct: 540 PKALVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +G+ IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 597 ASGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] Length = 653 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 216/717 (30%), Positives = 322/717 (44%), Gaps = 107/717 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 L K + GK LI F S P T+ N ++ WQ F +YC Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 RDVE + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L Sbjct: 173 IRDVEVEMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +T + + L +L G+D+ ++ + T++ L + T AK ++ R Sbjct: 233 NQAKHITG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIR 288 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346 Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + L + + D P L S VR+ A G +L V+D + IEARV+AW A Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451 E W++ F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + G++ + V S W Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + ++ WK AC ++ +R+ + L K + I LPS R L Y Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539 Query: 571 SDVK-GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + Sbjct: 540 PKASVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +G+ IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 597 ASGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719] gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719] gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] Length = 653 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 214/711 (30%), Positives = 323/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] Length = 653 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKG 575 ++ WK AC ++ +R+ + L K + I LPS R L Y + G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35] gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35] Length = 650 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 215/712 (30%), Positives = 321/712 (45%), Gaps = 107/712 (15%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIET S + K G + Y AE I + AY+ D + D T+ P +D + Sbjct: 3 IDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K + GK LI F S P T+ N ++ WQ F +YC RDVE Sbjct: 123 QNQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVE 174 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 175 VEMTIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKH 234 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +T + + L +L G+D+ ++ + T++ L + T AK ++ RL S Sbjct: 235 ITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSK 290 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + Sbjct: 291 TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARD 348 Query: 347 LNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 L + + D P L S VR+ A G +L V+D + IEARV+AW A E W+ Sbjct: 349 LIKDQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWR 408 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HC 455 + F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + Sbjct: 409 LDVFNTHGKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMGALEM 468 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G++ + V S WR + Sbjct: 469 GIEENELQGLVDS-----------------------------------------WRNANP 487 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 ++ WK AC ++ +R+ + L K + I LPS R L Y Sbjct: 488 NIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASV 541 Query: 575 GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ Sbjct: 542 GENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFK 598 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 599 IVGHVHDEVIVEIPKDSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224] gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224] Length = 653 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 213/711 (29%), Positives = 323/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT + + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] Length = 650 Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 213/706 (30%), Positives = 321/706 (45%), Gaps = 95/706 (13%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIET S + K G + Y AE I + AY+ D + D T+ P +D + Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + ++ + ++ WQ F +YC RDVE + Sbjct: 123 QNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T + Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ K Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L + + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354 Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 D P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G++ + Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 V S WR + ++ W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSY- 579 K AC ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 LN S+L +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 604 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3] gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3] Length = 653 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 214/711 (30%), Positives = 323/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358] Length = 653 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 219/707 (30%), Positives = 326/707 (46%), Gaps = 94/707 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L GV+ YA I L +Y + DEPV D + +PS +L+ L Sbjct: 5 LHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKVLRAL 64 Query: 62 RDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 RD + VAHN+ FER+ L G + W CT V GLP SL AL Sbjct: 65 RDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKALGLD- 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVEAT 170 + K +EGK LI F K P T+AN H + W+ +G+Y + DVE Sbjct: 124 -VQKDKEGKRLIQYFSK------PCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVE 176 Query: 171 RELFKRLIPLSDGERDLWL---LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + +L + + D W DQ IND G +D+ V + +L + +K+ + +L Sbjct: 177 TGISDKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRL 236 Query: 228 TDGIIRSSRQTYALRMYL----FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 T + S + L+ + + + +D E L H + ++ + + L + A Sbjct: 237 TG--VESVTKVQQLKAWAAAQGYPVESLD-KQHCEDYLNDPELHQDFPEVYRMIELYQEA 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 G+A+ K + + + DG ++G L+F GA T RW+G Q QNLPR + L Sbjct: 294 G-GAAVAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAA 352 Query: 344 IQALNRGETIA-----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 Q + +G+T+ +P+ + + VR+ + + V+D + IEARV+AW AGE W Sbjct: 353 RQIVAKGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWV 412 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGL 457 +KAF +GEDIYV T +K ++ ++ ++ R GK LALGYQGGA M + G+ Sbjct: 413 LKAFEDGEDIYVATASKMYHVTGEE-AEAMRQKGKQATLALGYQGGANALIVMGALRAGI 471 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +++ PE + WR + + Sbjct: 472 P---------------------------EEELPELV--------------QLWRKANPNI 490 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV---LPSSRRLVYSDVK 574 + LW + + + GG + R V +LV+ +K D H++ LPS R+L Y D K Sbjct: 491 VNLWHTVDKAARMAINNGG--AKRYVLADGKLVI-SYKGDEHVLQVQLPSGRKLNYFDCK 547 Query: 575 ---GDCSYLNTATSQLMR--ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 SYL R TYGGKLTEN+VQA SRD+L + G V VH Sbjct: 548 IRDNKISYLKGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKN-PSWAKGLPLKAEGYEAKRYRK 675 DE ++ P+ + + +LMT P WA GLPL +EG K YRK Sbjct: 608 DETINIVPEGT--KIEEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652 >gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] Length = 653 Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 213/711 (29%), Positives = 323/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WA+GL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652 >gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01] Length = 653 Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 213/711 (29%), Positives = 323/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + + K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2] gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2] Length = 650 Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 214/706 (30%), Positives = 322/706 (45%), Gaps = 95/706 (13%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIET S + K G + Y AE I + AY+ D + D T+ P +D + Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + ++ + ++ WQ F +YC RDVE + Sbjct: 123 QSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T + Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ K Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L + + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354 Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 D P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G++ + Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 V S WR + ++ W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSY- 579 K AC ++ +R+ + L K + I LPS R L Y + G+ S+ Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 LN S+L +TYGGKL ENIVQA +RD+L + GY IV VH Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVH 604 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649 >gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 662 Score = 260 bits (665), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 224/735 (30%), Positives = 333/735 (45%), Gaps = 134/735 (18%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L YA D PV++ D + ++P ++L Sbjct: 1 MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL-----GID---------------IPSKRWICTSV 98 L D+TV A N+ FER+ + L +D + W C+ V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN------- 151 + GLP SL+ LN KM+EG+ LI FC P T+AN Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCI------PCKETKANGGRTRNL 172 Query: 152 ---HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + W LF Y KRDVE + +RL P+ + + LDQ INDRG IDL+L Sbjct: 173 PQHALDKWNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELA 232 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 + L A+ R+ L + + ++ L +I +D ++ G L Sbjct: 233 KQAVALDAKSRESL-----------MAALKERTGLENPNSVIQMLDWLE-QHGLKTDSLG 280 Query: 267 HSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 N+ +L K ++L R + S++ K + DGR RG QFYGA+RTGR Sbjct: 281 KKNVQELLKTAQEPLRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGR 340 Query: 320 WSGCVFQPQNLPRQ------ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASN 372 ++G Q QNLP+ E E + +AL+ ++I D L S +R+ + Sbjct: 341 FAGRHIQLQNLPQNHLPDLSEARELVRQGNYEALDLLYDSIPDVL---SQLIRTAFVPRA 397 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRA 430 G K VV+D + IEARV++W+AGE WK + FA G+DIY +T ++ F P+ K ++ R Sbjct: 398 GMKFVVSDFSAIEARVISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQ 457 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP 490 GK+ ELA GY G K M + LD+ Sbjct: 458 KGKIAELACGYGGSVGALKAMGA---LDM------------------------------- 483 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + ++ +G + ++WR+ + ++ W + +++ + + + Sbjct: 484 --GIPEEELGN----LVQSWRSANPHIVDFWWQVDGAVKTTIKQRIPVWVNNIRFFCQSG 537 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT--------ATSQLMRERTYGGKLTENI 601 M + I LPS RRL Y + G+ + AT + + +YG K ENI Sbjct: 538 M------LFIELPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENI 591 Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-DTPYFSVGTLCSLMTKNPSWAKG 660 VQ ISRDILC M+ T IV VHDE++ E P DT SV +C M + P WA+G Sbjct: 592 VQGISRDILCYAMQ--TLRCCAIVGHVHDELIIECPKDT---SVDAICEEMGRTPPWAEG 646 Query: 661 LPLKAEGYEAKRYRK 675 L L+A+GY + Y+K Sbjct: 647 LVLRADGYACEFYQK 661 >gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JKD6159] gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] Length = 650 Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 212/706 (30%), Positives = 321/706 (45%), Gaps = 95/706 (13%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIET S + K G + Y AE I + AY+ D + D T+ P +D + Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + ++ + ++ WQ F +YC RDVE + Sbjct: 123 QNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMTIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T + Sbjct: 181 HKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ K Sbjct: 239 ENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L + + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354 Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 D P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G++ + Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 V S WR + ++ W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSY- 579 K AC ++ +R+ + + K + I LPS R L Y G+ S+ Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 LN S+L +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 604 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus CGS03] Length = 653 Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 213/711 (29%), Positives = 324/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ + G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] Length = 656 Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 213/714 (29%), Positives = 316/714 (44%), Gaps = 98/714 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G++ Y E V + L AYA+D V + D + +P ++ Sbjct: 1 MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L + V+ A+N+ FE I G ++W CT + G P+ L AL Sbjct: 61 SDLNNPEVIKHAYNASFE-ITGLNRYGYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 E K+ GKALI FC P T+ N + W LF EY +DV Sbjct: 120 PEDKRKLSTGKALIRYFCV------PCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVV 173 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E ++RL P+ +D W++D +N RG ++D+DLV + Q + +L E ++ Sbjct: 174 TEMEDYRRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQ 233 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS--NITQLAKDLILN---- 280 +T +SR L+T I+ D S+ L+ + + Q+A+D + Sbjct: 234 ITGLTNPNSRNQ--------LLTWIN--DNSDLKLEKLTKETVAESLQIAEDQVAEVLHI 283 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 R A + S+I K ++ AV +DGR+RG LQFYGA+RTGRW+G + Q QNLP + Sbjct: 284 RRALAKSSISKYESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLPHD--VPVAM 341 Query: 341 TQTIQALNRGETIADPLGLA------SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 I+ + G L S +R+ +A G L V+D + IEARVL+W+A Sbjct: 342 DTAIRLVKNGNARGVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLAD 401 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMA 452 E W+ FA G DIY + + F P++K ++ R GKV ELALGYQGG TM Sbjct: 402 EKWRQDVFAKGGDIYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMG 461 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + +K T +D+ P+ + WR Sbjct: 462 A------------LKQGLT--------------EDELPDIVHR--------------WRG 481 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD-VHIVLPSSRRLVYS 571 + + W D+ V+ + + + R + D + I LPS R+L Y Sbjct: 482 ANPRICGFWYDVDGAALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYP 541 Query: 572 DV--------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 K Y A + TYGGKL ENI QAI+RD L + K GY Sbjct: 542 QPYINENQFGKPALHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYK 601 Query: 624 IVLTVHDEIVSETPDTPYF--SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ +HDE+V E P + + +M WA GL L A+G+ + Y K Sbjct: 602 PLMHIHDEVVLEVPKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655 >gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47] gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47] gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH60] gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 653 Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 214/711 (30%), Positives = 324/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKG 575 ++ WK AC ++ +R+ + L K + I LPS R L Y + G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +RD+L + G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEALGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] Length = 650 Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 213/706 (30%), Positives = 322/706 (45%), Gaps = 95/706 (13%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIET S + K G + Y AE I + AY+ D + D T+ P +D + Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K + GK LI F CK + ++ + ++ WQ F +YC RDVE + Sbjct: 123 QSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMAIA 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T + Sbjct: 181 NKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ K Sbjct: 239 ENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L + + Sbjct: 297 NKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDLIKEQR 354 Query: 353 IAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 D P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 355 FDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFNT 414 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G++ + Sbjct: 415 HGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENE 474 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 V S WR + ++ W Sbjct: 475 LQGLVDS-----------------------------------------WRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSY- 579 K AC ++ +R+ + L K + I LPS R L Y + G+ S+ Sbjct: 494 K------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 580 ----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 LN S+L +TYGGKL ENIVQA +RD+L + G+ IV VH Sbjct: 548 SQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 604 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 605 DEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] Length = 653 Score = 259 bits (662), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 212/711 (29%), Positives = 324/711 (45%), Gaps = 95/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + ++ + ++ WQ F +YC RDVE Sbjct: 121 EVLRLQNQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + L Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARDL 352 Query: 348 NRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + D P L S VR+ + G +L V+D + IEARV+AW A E W++ Sbjct: 353 IKEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRL 412 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCG 456 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + G Sbjct: 413 DVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMG 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++ + V S WR + Sbjct: 473 IEENELQGLVDS-----------------------------------------WRNANPN 491 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 ++ WK AC ++ +R+ + L K + I LPS R L Y G Sbjct: 492 IVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVG 545 Query: 576 DCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 + S+ LN S+L +TYGGKL ENIVQA +R++L + +G+ I Sbjct: 546 ENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARELLAISIARLEASGFKI 602 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 603 VGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis] gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 651 Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 217/715 (30%), Positives = 326/715 (45%), Gaps = 107/715 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE L +A D+ PV ++D ++ +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDFNKEK-LPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FERI L P W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLFG 160 + L + KM EG LI FC G I + P+ W F Sbjct: 122 EGVGTVLKLKD--KKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAP-----NKWSTFI 174 Query: 161 EYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 +Y +RDVE + +RL P+ D D + DQ INDRG ID+D V ++ ++ + Sbjct: 175 DYNRRDVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKA 234 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDL 277 K+ E++ LT R L+M +L G+ + + +K +L ++ T A+ L Sbjct: 235 KIQEELKALT----RLENPNSVLQMIGWLREHGVTTDSLDKKVVKELLKTADETT-AQVL 289 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR----- 332 L + A+ S++ K + V DGR RG QF+GA+RTGRW+G + Q QNLP+ Sbjct: 290 KLRQQAAK-SSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPD 348 Query: 333 -QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +E E T ++A E + D S +R+ + S GKK +V D + IEARVL+ Sbjct: 349 LEEARELFGTGDLEAT---EFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSH 405 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFK 449 +AGE W+ K F G+DIY + ++ F P++K + E R GK+ ELA GY G K Sbjct: 406 LAGERWRSKVFEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALK 465 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 M + LD+ +KDK + + + Sbjct: 466 AMGA---LDM---------------------------------GLKDKELRPLVD----S 485 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR + ++ W D+ +++ + +K + I LPS R+L Sbjct: 486 WRQANPNIVLFWWDVDRAVKTAIKQHIQTETHGIQ------FEVNKGMLSITLPSGRKLA 539 Query: 570 YSDVK--------GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 Y K +Y T T++ R +YG K ENIVQAISRDIL MK + Sbjct: 540 YVKPKIGENQFGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE- 598 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++IV VHDE++ E S+ + LM P W + L+A+GYE Y+K Sbjct: 599 -FNIVGHVHDEVIIECGIDQ--SLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650 >gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes] gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 651 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 222/717 (30%), Positives = 324/717 (45%), Gaps = 111/717 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW--DDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE L +A D+ PV ++D ++ +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDFNKEK-LPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FERI L P W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLFG 160 + L + KM EG LI FC G I + P+ W F Sbjct: 122 EGVGTVLKLKD--KKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAP-----DKWSAFI 174 Query: 161 EYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 +Y +RDVE + +RL P+ D D + DQ INDRG ID+D V ++ + + Sbjct: 175 DYNRRDVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKA 234 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDL 277 K+ E++ LT G+ L+M +L G+ + + +K +L + + + Sbjct: 235 KIQEELKALT-GL---ENPNSVLQMIGWLREHGVTTDSLDKKAVKGLLK--TVDETTAQV 288 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR----- 332 + R ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ Sbjct: 289 LKLRQQAAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPD 348 Query: 333 -QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +E E T ++A E I D S +R+ + S GKK +V D + IEARVL+ Sbjct: 349 LEEARELFGTGDLEAT---ELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSH 405 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFK 449 +AGE W+ K F G+DIY + ++ F P++K + E R GK+ ELA GY G K Sbjct: 406 LAGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALK 465 Query: 450 TMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 M + GL ++ V S Sbjct: 466 AMGALDMGLTEEELQPLVNS---------------------------------------- 485 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA-NVPRLVMRRHKRDVHIVLPSSRR 567 WR + ++ W D+ V+E S + V R ++ I LPS R+ Sbjct: 486 -WRLANPNIVLYWWDVDNAVKTAVKELIPTSTHGIQFEVKRGIL-------FITLPSGRK 537 Query: 568 LVYSDVK-GD-------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 L Y + GD +Y T T++ R +YG K ENIVQAISRDIL MK Sbjct: 538 LAYIKPRIGDNQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQ-L 596 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 KN + IV VHDE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 597 KN-FKIVGHVHDEVIIECPIEQ--KLDEVASLMGIAPDWLSDINLRADGYECFFYQK 650 >gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11] Length = 650 Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 214/712 (30%), Positives = 320/712 (44%), Gaps = 107/712 (15%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIET S + K G + Y AE I + AY+ D + D T+ P +D + Sbjct: 3 IDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K + GK LI F S P T+ N + WQ F +YC RDVE Sbjct: 123 QSQ--KDKAGKNLIRYF------SMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVE 174 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + ++ P+++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 175 VEMTIANKIKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKH 234 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +T + + L +L G+D+ ++ + T++ L + T AK ++ RL S Sbjct: 235 ITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSK 290 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + + Sbjct: 291 TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL-EIARD 348 Query: 347 LNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 L + + D P L S VR+ A G +L V+D + IEARV+AW A E W+ Sbjct: 349 LIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWR 408 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HC 455 + F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M + Sbjct: 409 LDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEM 468 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G++ + V S WR + Sbjct: 469 GIEENELQGLVDS-----------------------------------------WRNANP 487 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 ++ WK AC ++ +R+ + L K + I LPS R L Y Sbjct: 488 NIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASV 541 Query: 575 GDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + + + Sbjct: 542 GENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASVFK 598 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 599 IVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] Length = 643 Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 222/724 (30%), Positives = 331/724 (45%), Gaps = 134/724 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ++ +D+ET S + K GV+ YA E I +Y+ + V L D T++ P L + Sbjct: 2 RIDLDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLTKEE-FPEFLKNH 59 Query: 61 LRDETVMCVAHNSLFERI----LFKK---TLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + + A N++FERI F+K + G P K W V A+ GLP+SL+ Sbjct: 60 ILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDP-KNWKDIMVHAQELGLPASLERCA 118 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 L E K GKALI F S P T+AN + W+ +GEY Sbjct: 119 SYLGLEEQ--KDTRGKALIRYF------SIPCKPTKANGGRTRNLPEHDPEKWEEYGEYN 170 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +DV + ++L +P+ D E D + DQ INDRG +D +LV + + L Sbjct: 171 VQDVVTQMAIAEKLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLS 230 Query: 222 EDIVKLTDGIIRSSRQTYA--LRMYLFLITGIDLVDM------SEGTLKSILSHSNITQL 273 ++ +T +SR L+ + + G+ D+ +EG LK +L Sbjct: 231 GELKAITGLANPNSRAQLLPWLKEHGYSANGLTKADVEQELKTAEGELKRVLEL------ 284 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L ++ S++ K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R Sbjct: 285 -------KLQTAMSSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARN 337 Query: 334 ------ERSEEILTQTIQALNRGETIADPLG-LASDCVRSCIIASNGKKLVVADLAGIEA 386 + + + I A+ E + D L VR+ ++A +G V+D + IEA Sbjct: 338 YIKDLDDARGYVKKRDIDAV---EILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEA 394 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RV+AW AGE W++ F+ IY + ++ F PI+++ KE R GK+ ELALGYQGG Sbjct: 395 RVIAWFAGEQWRLDVFSTHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPG 454 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M + + VK +++L G + Sbjct: 455 ALKQMGA--------LNMGVK---------------------------EEELQGLVDD-- 477 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 WR ++ ++Q WKD+ A + +I +R + +L R K + I LPS R Sbjct: 478 ---WRRANKKIVQFWKDVQR--AAI----KAIKSRAPIKLGKLRFRYRKGFLFITLPSGR 528 Query: 567 RLVYSDVK---------------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILC 611 L Y+ K GD +Y + TYGGKL ENIVQA +RDIL Sbjct: 529 NLAYARAKVEPGDYGDKIIYEGQGDKAYFTA-------QETYGGKLVENIVQATARDILA 581 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 E + G+ +V VHDE + E ++ + LM + P WA+GLPL +EGY K Sbjct: 582 EALLRIEAAGHGVVFHVHDEAIIEGSG---LTIEEVNDLMAQAPDWAEGLPLNSEGYVTK 638 Query: 672 RYRK 675 Y K Sbjct: 639 YYMK 642 >gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont phage 1] Length = 415 Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/415 (37%), Positives = 225/415 (54%), Gaps = 16/415 (3%) Query: 166 DVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 D+ ATRE+++ L ++ E LW LDQ IN RG +D++L + E+K+L Sbjct: 3 DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L+ RL Sbjct: 63 TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRINDPDIPPALRELLSIRLQ 122 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S ++ K L +++S+DGRLRGT QF GASRTGRW+G +FQP NLPR + Sbjct: 123 SCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDNG 182 Query: 344 IQALNRG--ETIADP-LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 I+AL G E I D + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ Sbjct: 183 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN 242 Query: 401 AFA-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 AF+ G+D+Y YA+AFN + V+K QR IGKVMEL LGY GG F T A Sbjct: 243 AFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFALAY 302 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 LDL + + +A S + + + + K+ T C+ +K+ WR H Sbjct: 303 SLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNAHT 361 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 + W D+ + +Q G R +L +RR K + I LPS R L Y Sbjct: 362 QTVSFWYDIEDAVKQAIQSPGVAFKCR-----KLSVRRDKSWLRICLPSGRSLCY 411 >gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] Length = 668 Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 209/715 (29%), Positives = 313/715 (43%), Gaps = 96/715 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ-Y 60 L IDIETRS + K G + YA+ I L AY WDD PV++ D T + P ++ + Sbjct: 6 LSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWEEA 65 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRD V+ A+N+ FE + G P +W CT G + L A+ + Sbjct: 66 LRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGLPQ 124 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ----------LFGEYCKRDVEAT 170 K+ GKALI FC P T++N + W LF EYC++DV Sbjct: 125 DKQKLAVGKALIRYFCV------PCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+ +RL P+ + E LW LD +N G R+D L+ + +KL + V+LT Sbjct: 179 HEILRRLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGID----LVDMSEGTLKSIL-SHSNITQLAKDLILNRLA 283 +S + D L D+ + T++ L N+ + ++ R Sbjct: 239 GLDNPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQ 298 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE-RSEEILTQ 342 +++ K + A R+RG Q+YGA+RTGRW+G + Q QNLPR ++ + + Sbjct: 299 LGKTSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARE 358 Query: 343 TIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++A N + D L S +R+ I S G K VVAD + IEAR +AW+AGE Sbjct: 359 LVKAKNYDGLRILYGNVPDTL---SQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQ 415 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTM 451 W + FA IY T A+ F P+++++K R GKV LALGYQG M Sbjct: 416 WVNEVFATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAM 475 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + GL +D+ P+ + W Sbjct: 476 GALKMGL---------------------------TEDELPDIVTR--------------W 494 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R ++ + LW + V+Q + + + + + LPS R+L Y Sbjct: 495 RNANKRICGLWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYY 554 Query: 571 ------SDVKGDCSYLNTATSQLMR----ERTYGGKLTENIVQAISRDILCEGMKNATKN 620 + G + A Q R + TYGGK+TENIVQAI+RD L ++ + Sbjct: 555 PKPFLQENRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQK 614 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G V VHDE++ + P +V +C LM + WA GL LK G+E+ Y K Sbjct: 615 GLQTVFHVHDEVIIDAPMET--TVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667 >gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 654 Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 210/705 (29%), Positives = 318/705 (45%), Gaps = 82/705 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET SP + GV+ Y+E + I L +YA+ V + D +P D++ Sbjct: 1 MRHLNIDIETYSPNDI-SFGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+ + V+ A+N+ FE + G ++W CT + G P L AL Sbjct: 60 LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118 Query: 119 SEHLTKMEEGKALIARF---CKGSIDS-------PPYDCTRANHVQAWQLFGEYCKRDVE 168 ++ K + G ALI F CK + + P +D + W + Y K+DV Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDK------WAAYIAYNKQDVV 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E ++RL P+ + W +D +N G ID LV + + +K L E+ + Sbjct: 173 TEMECYRRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYE 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT +SR L +L T ++L +++ ++ + ++ ++ LAK ++ R + Sbjct: 233 LTGLSNPNSRNQ--LLDWLNSNTNLELEKLTKDSVAAAMTDAD--DLAKKVLTIRKKLAK 288 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQTIQ 345 S++ K ++ A DGRLRGTLQFYGA+RTGRW+G + Q QNLPR + + ++ Sbjct: 289 SSVSKYEMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVK 348 Query: 346 ALNR---GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 A NR G D S +R+ IIA G L VAD + IEARV+AW++GE W+ K F Sbjct: 349 ASNRVGLGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVF 408 Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A G DIY + + F P+ K V+ R GKV ELALGYQGG K M + LD+ Sbjct: 409 AEGGDIYCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMGA---LDMG 465 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 +++ P ++G WR +++ Sbjct: 466 -----------------------LTEEELP------NIVGL--------WRQASPNIVKF 488 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK-RDVHIVLPSSRRLVYSDV------ 573 W + + V G ++ V + R + I LPS R+L Y D Sbjct: 489 WYTVEKAAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNN 548 Query: 574 --KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 K + + + E TYGGKL ENI QA++RD L + + NG ++ +HDE Sbjct: 549 FDKEAVHFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDE 608 Query: 632 IVSETPDTPYFSVGTLCSLMTKNP-SWAKGLPLKAEGYEAKRYRK 675 V E P + P WA+GL L A G+ Y K Sbjct: 609 AVIEVPKDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653 >gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14] Length = 651 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 217/716 (30%), Positives = 323/716 (45%), Gaps = 109/716 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE I L A + ++ PV ++D +++ +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLSKEK-LPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FER+ L P W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLF 159 + L + KM EG LI FC P T+ N H W F Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFC------VPCKPTKINGGRTRNLPHHAPDQWATF 173 Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 +Y +RDVE + +RL P+ D D +L DQ INDRG ID+D V ++ + + Sbjct: 174 IDYNRRDVEVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESK 233 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKD 276 ++ E++ LT L+M +L G+ + + +K +L + + +K Sbjct: 234 AQIQEELKALTS----LENPNSVLQMIGWLREHGVTTDSLDKKAVKELLKTVD-DKTSKV 288 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L L R ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ Sbjct: 289 LKL-RQQAAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLP 347 Query: 337 EEILTQTIQALNRG-----ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + L + + G E + D S +R+ + S GKK +V D + IEARVL+ Sbjct: 348 D--LEEARKLFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSH 405 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFK 449 +AGE W+ K F G+DIY + ++ F P++K + R GK+ ELA GY G K Sbjct: 406 LAGEKWRSKVFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALK 465 Query: 450 TM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 M A GL ++ V S Sbjct: 466 AMGALDMGLSEEELQPLVNS---------------------------------------- 485 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 WR + ++ LW D+ V+E S + R + + I LPS R+L Sbjct: 486 -WRQANPNIVLLWWDVDNAVKTAVKEQIPTSTHGIQFEVRSGI------LFITLPSGRKL 538 Query: 569 VY-------SDVKGD-CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y + G+ +Y T T++ R +YG K ENIVQAISRDIL +K + Sbjct: 539 AYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQLKE 598 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + IV VHDE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 599 --FKIVGHVHDEVIIECPMEQ--KIDKIASLMGIAPDWMSDINLRADGYECLFYQK 650 >gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] Length = 651 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 216/717 (30%), Positives = 327/717 (45%), Gaps = 111/717 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L ID+ET L K GV++YAE I L A + D+ PV ++D T+++ +P +L Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTKEN-LPDQIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109 Q L +++++ A N+ FERI L P W C+ V + GLP SL Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLF 159 + L E K++EG +I FC PY T+ N H W F Sbjct: 122 EGVGTVLKLKEQ--KLKEGGDVIRYFCL------PYKPTKINGGRKRNFPHHAPDKWAAF 173 Query: 160 GEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 Y KRDVE + +L P+ D + + DQ IND G ID+D V + + + Sbjct: 174 INYNKRDVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESK 233 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKD 276 K+ E++ +LT G+ L+M +L G+ + + +K +L + + K Sbjct: 234 SKIQEELKELT-GL---ENPNSVLQMIGWLREHGVTTNSLDKKAVKELLKVVD-AKTTKV 288 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR---- 332 L L R ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ Sbjct: 289 LKL-RQQAAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLP 347 Query: 333 --QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 +E + T ++A + D L S +R+ + S+GKK +V D + IEARVL+ Sbjct: 348 DLKEARDLFKTGDLEATDLLYGTQDTL---SQLIRTAFVPSDGKKFIVCDFSAIEARVLS 404 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVF 448 +AGE W+ F G+DIY + ++ F P++K + + R GK+ ELA GY G Sbjct: 405 HLAGEKWRSMVFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGAL 464 Query: 449 KTM-ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 K M A GLD Q+ V S Sbjct: 465 KAMGAIDMGLDEQELQPLVDS--------------------------------------- 485 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 WR + ++ W D+ + +I ++ + + K + I LPS R+ Sbjct: 486 --WRQANPNIVLFWWDVDKAVKT------AIKYQKQTETHGIQFKVRKGMLFITLPSGRK 537 Query: 568 LVYSDVK--------GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 L Y K +Y T T++ R +YG K ENI+QAISRDIL MK Sbjct: 538 LAYVKPKMGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLK 597 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + IV VHDEI+ E + ++ + +LM K P W + L+A+GYE Y+K Sbjct: 598 D--FRIVGHVHDEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] Length = 651 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 213/711 (29%), Positives = 325/711 (45%), Gaps = 99/711 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L ID+ET L K GV++YAE I L A + D+ PV ++D T+++ +P +L Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTKEN-LPDQIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109 Q L +++++ A N+ FERI L P W C+ V + GLP SL Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ----AWQLFGEYCKR 165 + L E K++EG +I FC + + N W F Y KR Sbjct: 122 EGVGTVLKLKEQ--KLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +L P+ D + + DQ INDRG ID+D V + + + K+ E+ Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + +LT G+ L+M +L G+ + + +K +L + + K L L R Sbjct: 240 LKELT-GL---ENPNSVLQMIGWLREHGVTTNSLDKKAVKELLKVVD-AKTTKVLKL-RQ 293 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR------QERS 336 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ +E Sbjct: 294 QAAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEAR 353 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 + T ++A + D L S +R+ + S+GKK +V D + IEARVL+ +AGE Sbjct: 354 DLFKTGDLEATDLLYGTQDTL---SQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEK 410 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTM-AS 453 W+ F G+DIY + ++ F P++K + + R GK+ ELA GY G K M A Sbjct: 411 WRSMVFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMGAI 470 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 GLD Q+ V S WR Sbjct: 471 DMGLDEQELQPLVDS-----------------------------------------WRQA 489 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + ++ W D+ + +I ++ + + K + I LPS R+L Y Sbjct: 490 NPNIVLFWWDVDKAVKT------AIKYQKQTETHGIQFKVRKGMLFITLPSGRKLAYVKP 543 Query: 574 K--------GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDI 624 K +Y T T++ R +YG K ENI+QAISRDIL MK + I Sbjct: 544 KMGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQLKD--FRI 601 Query: 625 VLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V VHDEI+ E + ++ + +LM K P W + L+A+GYE Y+K Sbjct: 602 VGHVHDEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes] gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes] gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 651 Score = 247 bits (630), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 210/716 (29%), Positives = 321/716 (44%), Gaps = 109/716 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE + L A + D+ PV ++D ++ +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDFNKEK-LPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSVLARTNGLPSSL 109 + L ++ V+ A N+ FERI L P W C+ + + GLP SL Sbjct: 62 EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---------KGSIDSPPYDCTRANHVQAWQLFG 160 + L + KM EG LI FC G I + P+ W F Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAP-----NKWSTFI 174 Query: 161 EYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 +Y +RDVE + +R+ P+ + + DQ INDRG ID+D V ++ + + Sbjct: 175 DYNRRDVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKA 234 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSILSHSNITQLAKDL 277 K+ ++ LT G+ + L+M +L G+ + + +K +L + + + Sbjct: 235 KIQAELKTLT-GL---EKPNSVLQMISWLREHGVATDSLDKKAVKELLK--TVDETTAQV 288 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR----- 332 + R ++ S++ K + V DGR RG QF+GA+RTGRW+G + Q QNLP+ Sbjct: 289 LKLRQQAAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPD 348 Query: 333 -QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 +E E T +++ E + D S +R+ + S GKK +V D + IEARVL+ Sbjct: 349 LKEARELFRTGDLEST---ELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSH 405 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFK 449 +AGE W+ K F G+DIY + ++ F P++K + E R GK+ ELA GY G K Sbjct: 406 LAGERWRSKVFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALK 465 Query: 450 TMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 M + GL ++ V S Sbjct: 466 AMGALDMGLSEEELQPLVNS---------------------------------------- 485 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 WR + ++ W D+ V+E S + + + I LPS R+L Sbjct: 486 -WRQANPNIVLYWWDVDNAVKTAVKELLPTSTQNIQ------FEVKSGILFITLPSGRKL 538 Query: 569 VY-------SDVKGD-CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y + G+ +Y T T++ R +YG K ENIVQAISRDIL MK Sbjct: 539 AYIKPRIGENQFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL-- 596 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 N + IV VHDE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 597 NDFKIVGHVHDEVIIECPIEQ--KLDEVASLMGIAPYWLSDINLRADGYECFFYQK 650 >gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 662 Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 222/728 (30%), Positives = 325/728 (44%), Gaps = 120/728 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L YA D V++ D +P D+L Sbjct: 1 MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL-----GIDI-----PSKR----------WICTSV 98 L DE+V A N+ FER+ + L +D P R W C+ + Sbjct: 61 DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA--- 155 + GLP SL+ A L KM+EGK LI FC P T+ N + Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQ--KMKEGKDLIRYFCV------PCKETKLNGGRTRNL 172 Query: 156 -------WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206 W LF Y KRDVE + +RL P+ + D + LDQ INDRG ID L Sbjct: 173 PRHAPDKWTLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLA 232 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSIL 265 + A+ R L + + G ++M +L G+ + + ++ +L Sbjct: 233 ENAIVIDARSRDSL----MAVLKGKTGLENPNSVIQMIGWLEQHGMKTDSLGKKQVQELL 288 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + + ++L R + S++ K + D R RG QFYGA+RTGR++G Sbjct: 289 KTAE--EPLRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHI 346 Query: 326 QPQNLPRQ------ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVV 378 Q QNLP+ E E + +AL ++I D L S +R+ + G K VV Sbjct: 347 QLQNLPQNHLPDLAEARELVRQGNYEALELLYDSIPDVL---SQLIRTAFVPRKGMKFVV 403 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVME 436 +D + IEARVL+W+AGE W++ FA DIY + + F P++K V+ R GK+ E Sbjct: 404 SDFSAIEARVLSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAE 463 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 LALGY G K M + LD+ ++N + YP Sbjct: 464 LALGYGGSTGALKAMGA---LDM-GLTEN---------------------ELYP------ 492 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + ++WR+ + ++ W + ++E + A + + + M Sbjct: 493 ---------LVQSWRSANPHIVDFWWQVDATVKTAIKEQIPMRAGCIRFLCQSGM----- 538 Query: 557 DVHIVLPSSRRLVYSDVK-GDCSYLNT--------ATSQLMRERTYGGKLTENIVQAISR 607 + I LPS RRL Y + G+ + AT + R +YG K ENIVQ ISR Sbjct: 539 -LFIQLPSGRRLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISR 597 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEG 667 DILC M+ T IV VHDE++ E SV +C M + P WA+GL L+A+G Sbjct: 598 DILCYAMQ--TLRCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADG 653 Query: 668 YEAKRYRK 675 YE + Y+K Sbjct: 654 YECEFYQK 661 >gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] Length = 663 Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 201/720 (27%), Positives = 327/720 (45%), Gaps = 116/720 (16%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 IDIET S L K GV+ Y ++ I L Y+ D V + D + +P +++ L D Sbjct: 9 IDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEIIMALTD 68 Query: 64 ETVMCVAHNSLFERILF---------KKTLGIDIPS---------KRWICTSVLARTNGL 105 E + A N+ FER+ KK + IP W C+ V + GL Sbjct: 69 ENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWSAYMGL 128 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQA 155 P L A L E K+ EGK LI FC P T+ N + Sbjct: 129 PLLLAGAGAVLGLEEQ--KLTEGKELIRYFCV------PCKPTKVNGGRTRNLPQHDMIK 180 Query: 156 WQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W++F +Y KRDVE + +L P+ + + + LDQ INDRG +D+D+V Sbjct: 181 WEMFKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFD 240 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + L + + ++T + + ++ +L G+++ + + + ++L+ + + Sbjct: 241 EKSKAVLADKMQEMTG--LENPNSVQQMKQWLS-CNGLEMDSLGKKEVAAVLNTA--PEP 295 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 K ++ R + S++ K ++ AV SDGR RG FYGA+R+GRW+G + Q QNLP+ Sbjct: 296 LKTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQN 355 Query: 334 -----ERSEEILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 E + ++ Q +A+N + + D L S +R+ + G + +V+D + IEA Sbjct: 356 HMSDLEEARSLVKQGNYEAMNMLYDDVPDTL---SQLIRTAFVPRKGMEFIVSDFSAIEA 412 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGG 444 RVL+ +AGE W+ FA+G DIY + ++ F P++K V+ R GK+ ELALGY G Sbjct: 413 RVLSHLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGS 472 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 K+M + LD+ +K Sbjct: 473 VGALKSMGA---LDMGLEEDELKP------------------------------------ 493 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + WR + +++LW D+ V++ R +++ + + I LPS Sbjct: 494 -LVDMWREANPNIVKLWWDVDRAVKKAVKQ------REPSSIGSITFSYKSGMLFIGLPS 546 Query: 565 SRRLVYSDVKGDCSYLNT---------ATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R L Y K + + T + R +YG K ENIVQAISRDIL ++ Sbjct: 547 GRCLSYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIR 606 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T + I VHDE++ E + S+ +C M + P W +G+ L+A+GYE + Y+K Sbjct: 607 --TLSHCFICGHVHDELIIECSKS--VSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662 >gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] Length = 631 Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 205/679 (30%), Positives = 304/679 (44%), Gaps = 106/679 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 L K + GK LI F S P T+ N ++ WQ F +YC Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 RDVE + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L Sbjct: 173 IRDVEVEMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + +T + + L +L G+D+ ++ + T++ L + T AK ++ R Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIR 288 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L Sbjct: 289 LQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL- 346 Query: 342 QTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + L + + D P L S VR+ A G +L V+D + IEARV+AW A Sbjct: 347 EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYA 406 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTM 451 E W++ F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 407 KEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAM 466 Query: 452 AS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + G++ + V S W Sbjct: 467 GALEMGIEENELQGLVDS-----------------------------------------W 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R + ++ WK AC ++ +R+ + L K + I LPS R L Y Sbjct: 486 RNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAY 539 Query: 571 SD-VKGDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + Sbjct: 540 PKALVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARLE 596 Query: 619 KNGYDIVLTVHDEIVSETP 637 G+ IV VHDE++ E P Sbjct: 597 ALGFKIVGHVHDEVIVEIP 615 >gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] Length = 661 Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 212/730 (29%), Positives = 320/730 (43%), Gaps = 126/730 (17%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L ID+ET S + K G + YAE I L + D+ PV ++D +P+++L Sbjct: 2 MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS------------------KRWICTSVLA 100 L DE ++ A N+ FER+ L P W CT + + Sbjct: 62 AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN--------- 151 GLP SL+ L + KM+EGK LI FC P T+ N Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQ--KMKEGKDLIKYFCS------PCKPTKVNGGRTRNLPE 173 Query: 152 HV-QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 H W+ F Y +RDVE + +RL P+ D + +DQ IND G +D+D+V Sbjct: 174 HAPDKWETFKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVV-- 231 Query: 209 LQELIA-QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI-TGIDLVDMSEGTLKSILS 266 + IA ER K ++ I ++M +L G++ + + + ++ Sbjct: 232 -ENAIAFDERSK--SALITAMKNITNLDNPNSVVQMKQWLSDNGVETESLGKKEVAGLIK 288 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 ++ ++K L L RL + S++ K + AV DGR G QFYGA+R+GRW+G + Q Sbjct: 289 ETD-GDISKALKL-RLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQ 346 Query: 327 PQNLPRQERSEEILTQTIQALNRGE---------TIADPLGLASDCVRSCIIASNGKKLV 377 QNLP+ S+ LT+ + + G+ I D L S +R+ IA G K + Sbjct: 347 LQNLPQNHMSD--LTEARELVRTGDYDTLDMLYDDIPDTL---SQLIRTAFIARPGYKFI 401 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVM 435 V+D + IEARVLA +AGE W+ K FA G+DIY + ++ F P+ K ++ R GK+ Sbjct: 402 VSDYSAIEARVLAHLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIA 461 Query: 436 ELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 ELALGY G K+M + GL ++ V S Sbjct: 462 ELALGYGGSVGALKSMGALEMGLTEEELQPLVDS-------------------------- 495 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 WR+ + + W ++ ++ + + M Sbjct: 496 ---------------WRSSNPMITAFWWNVDNAIKTAIKMHIPTEVNGIHFCYKSGMLLI 540 Query: 555 KRDVHIVLPSSRRLVYSDVK-GDCSYLNT--------ATSQLMRERTYGGKLTENIVQAI 605 KR PS R L Y K G+ + +T + R +YG K ENIVQA+ Sbjct: 541 KR------PSGRVLSYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAV 594 Query: 606 SRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKA 665 SRDILC MK T IV VHDE++ E + + +C M ++ W G+ L+A Sbjct: 595 SRDILCNAMK--TLRHCFIVGHVHDELIIEC--SSGVDLNEICKQMGRSLDWMPGILLRA 650 Query: 666 EGYEAKRYRK 675 +GYE Y+K Sbjct: 651 DGYETNFYKK 660 >gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/361 (39%), Positives = 205/361 (56%), Gaps = 9/361 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A S + ++ + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 G 536 G Sbjct: 362 G 362 >gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1] Length = 645 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 191/665 (28%), Positives = 297/665 (44%), Gaps = 84/665 (12%) Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 +P +L + L D V A N+ FER++ ++ LGI P K W CT LA G L Sbjct: 22 LPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAWRCTMALAYMLGFAGDLLAV 81 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGS--IDSPPYDC-TRANHVQAWQLFGEYCKRDVEA 169 + E K EGK LI F K P++ A + W F +Y RDVE Sbjct: 82 GTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEATDPEDWWHFCKYNIRDVET 141 Query: 170 TRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + RL+ P+ D E D++ LDQ IND G ID + L + ++ E++ + Sbjct: 142 ELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYSALALAEARKPQIIEEMADI 201 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN---ITQLAKDLILNRLAS 284 T + + L +L G D+ T+ ++ ++ + A ++ RL S Sbjct: 202 TG--LNNPNSPAQLTPWL-KERGYPFSDLRSDTVNKVIREADENGVDPEAIRVLQMRLNS 258 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT--- 341 + +++ K T+ +A DGR R +LQF GASRT RW+G Q QNLPR + E +T Sbjct: 259 AKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRIQTQNLPRTPKLIEDVTDLS 318 Query: 342 --------QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + + AL + +P+ C+RS I + G K +VADL+ IE+ V+ W+ Sbjct: 319 IVNKMIHQRDLDALTL--YVGEPMDALVGCIRSAFIPTPGHKFIVADLSSIESVVIGWLT 376 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 W + A D+Y + A + P ++ +K R+ K L GY+ G Sbjct: 377 DCKWFMNTLAAKHDLYRSFAAHWLHLPYEE-TKPHRSKAKPATLGAGYRLGGGHMDENGK 435 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 GL W AE+ + M + E +V +A+R Sbjct: 436 KTGL-----------------WGYAENMGVHMTQKEAEESV-------------QAFRDL 465 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY--- 570 +++ W DL V++ R+ L++ K + I LPS R++ Y Sbjct: 466 CPEIVRAWYDLENAVFKVIR------TRQAVVWGCLIIEYTKPFLTIRLPSGRKMYYFRP 519 Query: 571 -----------------SDVKGDCSY---LNTATSQLMRERTYGGKLTENIVQAISRDIL 610 K + Y + + ++ + ++GGKL ENIVQA++RD+L Sbjct: 520 RLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIYSHGGKLVENIVQALARDVL 579 Query: 611 CEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEA 670 EG+K A + G+ IV+ +HDEIV+E P+ +V L S M WA+GLPL A G+E Sbjct: 580 AEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCMAAELPWAEGLPLGAAGWEG 639 Query: 671 KRYRK 675 YRK Sbjct: 640 YFYRK 644 >gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3] gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3] gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5] gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12] Length = 1032 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 162/453 (35%), Positives = 237/453 (52%), Gaps = 25/453 (5%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYL-----RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N L F+R++ K G ++ + I T ++A + LP SL + Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR---ANHVQAWQLFGEYCKRDVEA 169 C LN + K + GKALI RF K + + Y R A H + W F Y K D+ + Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKN--YKIRRYTAATHPKEWAEFIAYAKSDITS 178 Query: 170 TRELFKRLIPLSDGE---RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RE++K++ + E R LWL DQ INDRG+++D+ L E + + +++L E+ + Sbjct: 179 MREVYKKMPKWGNSEFEDRVLWL-DQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQR 237 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 G + L + L + + + TL +L+ ++ A+ +I RL ++ Sbjct: 238 KYGGSLTGKD---FLPILQELAPAHRIHNAQKSTLNDLLADEDLPDDARTIIEMRLGAAS 294 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +A K L SSD R RG LQ+ GA RT RW+G FQPQNL R ++ L + I A Sbjct: 295 TASTKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAA 354 Query: 347 LNRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 L +G D L + VRSCII G+K VVAD + +E R LAW+AGE+ + F Sbjct: 355 LLKGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRA 414 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQ---RAIGKV 434 G DIY T K F D + KE+ R IGK Sbjct: 415 GLDIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447 Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 96/286 (33%), Positives = 130/286 (45%), Gaps = 47/286 (16%) Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------- 485 EL LGY+GG F T A + GLDL + ++ + T W + W Sbjct: 748 ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 807 Query: 486 ---QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-----S 537 +D P + + DK + C+ +K+ WR H + W+DL +G V+ G Sbjct: 808 PGEKDDRPSY-ILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAG 866 Query: 538 ISARRVANVPRLVMRRHKRD----------VHIVLPSSRRLVYSDV-------KGDCSYL 580 RR + R + D + + LPS R L Y + + + Sbjct: 867 AHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRI 926 Query: 581 NT-------ATSQLMRE----RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 NT +QL R+ T+GGK ENIVQA+ RD+L M N GY IVL+VH Sbjct: 927 NTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVH 986 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V ETPDTP ++V L LM P WA G PL AEG E KRY K Sbjct: 987 DELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032 >gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2] gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2] gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 141/361 (39%), Positives = 203/361 (56%), Gaps = 9/361 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A S + + + + +K+ C+ +K+ WR H + W D+ + +Q Sbjct: 303 REATSWYQKSVETDKTYGLSEKIF-VNCDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 G 536 G Sbjct: 362 G 362 >gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 9/361 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 G 536 G Sbjct: 362 G 362 >gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5] Length = 773 Score = 239 bits (611), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 150/393 (38%), Positives = 215/393 (54%), Gaps = 19/393 (4%) Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 K+L +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L Sbjct: 2 KRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLREL 61 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + RL S ++ K L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR Sbjct: 62 LSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDP 121 Query: 338 EILTQTIQALNRG--ETIADP-LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + I+AL G E I D + L S +R CIIA GKKLV++DL+ IE R+LAW+AG Sbjct: 122 NTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAG 181 Query: 395 EDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 E+WK+KAF+ G+D+Y YA+AFN + V+K+QR IGKVMEL LGY GG F Sbjct: 182 ENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFL 241 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 T A GLDL + ++ +A S + + + + +K+ C+ +K+ Sbjct: 242 TFALAYGLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEKIF-VNCDSLKRM 300 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR H + W D+ + +Q G R +L +RR K + I LPS R L Sbjct: 301 WRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLC 355 Query: 570 YSDVK---GDCSYL--NTATSQLMRERTYGGKL 597 Y + G +Y+ N + + R +TYGGKL Sbjct: 356 YPSARIENGQITYMGTNPYSRKWERLKTYGGKL 388 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/77 (55%), Positives = 51/77 (66%) Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N WA Sbjct: 696 ENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHWA 755 Query: 659 KGLPLKAEGYEAKRYRK 675 LPL A G+E RYRK Sbjct: 756 WDLPLSANGFETYRYRK 772 >gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23] gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23] Length = 545 Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 180/599 (30%), Positives = 277/599 (46%), Gaps = 89/599 (14%) Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV- 153 GLP+SL AL ++ K EGKALI FC P T+AN H Sbjct: 8 GLPASLDMMSKALRLAQE--KDNEGKALIRYFCM------PCKPTKANGGRTRNYPEHAS 59 Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + W F EYC++DV R + K++ P + E+ W LDQ I D+G RID+DLV Sbjct: 60 EKWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVK--HA 117 Query: 212 LIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 + QER + + K G+ + + L+ +L + G + +++ ++ +L+ + Sbjct: 118 IACQERYQ--ASLSKKAKGLTGLENPNSVQQLKDWLADM-GYPVSSLNKDSVSELLADED 174 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 + + ++++L R S ++I K + A DGR+RG LQF GA+RTGRW+G + Q QN Sbjct: 175 LDEDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQN 234 Query: 330 LPRQERSEEILTQTIQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAG 383 LPR + + + + L G+ A + + S +R+ IA +G + D + Sbjct: 235 LPRNYIKD--IAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSA 292 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IEARV+AW+AGE W++ F + IY + ++ F+ PI++V K R GKV ELALGY G Sbjct: 293 IEARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNG 352 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G M A++ L Sbjct: 353 GVNALIAMG----------------------------------------ALEMGLKENEL 372 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + AWR + LW+ + + +IS R+ L + I LP Sbjct: 373 QGIVDAWRKASPAITSLWRGVEKHAKL------AISTRKSQKYKGLTFYYEAGILFIKLP 426 Query: 564 SSRRLVYSDVK-------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 S R L Y K Y ++ TYGGKL ENIVQAI+RD L ++ Sbjct: 427 SGRNLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRR 486 Query: 617 ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G D V+ VHDE ++E ++ SV L +++ + SWA GLPL+ +G+ + Y K Sbjct: 487 IEDTGIDTVMHVHDEAITEVQESES-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544 >gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 239 bits (611), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 202/361 (55%), Gaps = 9/361 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 G 536 G Sbjct: 362 G 362 >gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4] Length = 773 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/385 (38%), Positives = 211/385 (54%), Gaps = 19/385 (4%) Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L+ RL S Sbjct: 10 QLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSC 69 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ K L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+ Sbjct: 70 TTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIE 129 Query: 346 ALNRG--ETIADP-LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 AL G E I D + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF Sbjct: 130 ALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAF 189 Query: 403 A-----NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + G+D+Y YA+AFN + V+KEQR IGKVMEL LGY GG F T A GL Sbjct: 190 SEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGL 249 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 DL + ++ +A + + + + +K+ T C+ +K+ WR H Sbjct: 250 DLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQT 308 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574 + W D+ + +Q G R +L +RR K + I LPS R L Y + Sbjct: 309 VSFWYDIEDAVKQAIQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARIEN 363 Query: 575 GDCSYL--NTATSQLMRERTYGGKL 597 G +Y+ N + + R +TYGGKL Sbjct: 364 GQITYMGTNPYSRKWERLKTYGGKL 388 Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 43/77 (55%), Positives = 51/77 (66%) Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N WA Sbjct: 696 ENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 755 Query: 659 KGLPLKAEGYEAKRYRK 675 LPL A G+E RYRK Sbjct: 756 WDLPLSANGFETYRYRK 772 >gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] Length = 538 Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 176/575 (30%), Positives = 270/575 (46%), Gaps = 84/575 (14%) Query: 128 GKALIARFCK----------GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 GK LI +FC G+ + P D T +W F +Y +RDVE + RL Sbjct: 20 GKRLIKQFCTPATPSVLNGGGTRNLPSSDPT------SWAQFIDYNQRDVEVELAIHDRL 73 Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 P+ + E D + LDQ IND G +D L L Q R +LT + + Sbjct: 74 SSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATLARARELTG--LENP 131 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L+ +L G ++ +++ +++ L + T K+++ R + S++ K + Sbjct: 132 NSPIQLKEWL-TTHGCEMSSLAKADVEAALESA--TGKVKEVLELRGDLAKSSVKKYQAM 188 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI---QALNRGET 352 +DGR RG +QFYGA RTGR++G + Q QNLPR + +T+ + L+ E Sbjct: 189 HNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARTLTRQRNLDALEL 248 Query: 353 IADPL-GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + D + S +R+ I S G + +VAD + IEARV+AW+AGE + AF +G+D+Y Sbjct: 249 LYDSVPDTLSQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETSTLAAFRDGKDLYCE 308 Query: 412 TYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T ++ F P++K ++ E R GK+ LA GY G K M Sbjct: 309 TASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG----------------- 351 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A++ L + + AWRA + +++LW D+ + Sbjct: 352 -----------------------ALRMGLAEHELKPIVDAWRAANPNIVRLWADVEQAAL 388 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATS--- 585 +I+ R+ + L + I LPS RRL Y + G+ + T+ + Sbjct: 389 ------DAITTRQAVRLRNLRFTAESGILFITLPSGRRLAYVKPQLGENRWGGTSITYSG 442 Query: 586 -----QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 + R TYGGKL ENIVQA++RD+L M + G+ IV+ VHDEIV + P+ Sbjct: 443 VTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHKIVMHVHDEIVIDEPEDS 502 Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 F++ C LMT P WA GLPL A+GYE YRK Sbjct: 503 GFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537 >gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2] gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2] gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 9/361 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G E I D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 G 536 G Sbjct: 362 G 362 >gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1] gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1] Length = 1062 Score = 236 bits (603), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 163/471 (34%), Positives = 233/471 (49%), Gaps = 42/471 (8%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +LF+D ET S L KVG +AYAE I +C YA D+ V+ WD TE MP +L Sbjct: 4 FERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPRELR 63 Query: 59 QYLRD----ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + LR + + +A+ LF+R++ ++ GID+P + T ++A + LP SL C Sbjct: 64 KALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDMQCQ 123 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC---TRANHVQAWQLFGEYCKRDVEATR 171 L K + GKALI RFCK + + Y TR H + W F Y D+ A R Sbjct: 124 VLGVDAEHAKDKAGKALIKRFCKPTPKT--YKIRRYTRETHPEEWAKFLRYAALDIIAMR 181 Query: 172 ELFKRLIPLSD--GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E++ R+ + E ++ L+DQ INDRG+ +D+DL + + +++L E+ + Sbjct: 182 EVYWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERFG 241 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + + LR + + + + TL +L + K LI RL +S +A Sbjct: 242 GKLTGNDFLPILRD---IAPAFTIHNAQKSTLNDLLEDPDFPDEGKALIEMRLGASSTAS 298 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE----------- 338 K N L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E S++ Sbjct: 299 TKYNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGE 358 Query: 339 ----------ILTQTIQALNRGET--IADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 +LT I +L RG D L + VR CII + GKK VVAD + +E Sbjct: 359 SDVSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEG 418 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---KEQRAIGKV 434 R LAW+AGE + F G DIY T K F D + K+ R IGK Sbjct: 419 RGLAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKANRKDLRQIGKA 469 Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 95/306 (31%), Positives = 136/306 (44%), Gaps = 55/306 (17%) Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 SK + EL LGY GG F A + GLDL + +K T W A+ + Sbjct: 758 ASKSGFLVAHNCELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYE 817 Query: 484 WM-------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 + +D+ P + + K + C+ +K+ WR H + W +L + C Sbjct: 818 YARINEAKRPPKPGKKDERPTY-ILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLC 876 Query: 531 VVQEGGSI---------SARRVANVPRLVMRR-----HKRD--------VHIVLPSSRRL 568 ++ G R+ + R + +RD + I LPS R + Sbjct: 877 AIRNPGKAYWAGANVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIM 936 Query: 569 VY--------SDVKGDCSYLNTAT-------SQLMR----ERTYGGKLTENIVQAISRDI 609 Y +++ D T+T +Q R + TYGGKLTENIVQA+ RDI Sbjct: 937 SYPGIALSVTTEIDEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDI 996 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYE 669 L M GY+IVL+VHDE+++E PDT ++ LC+LM P WAKG PL AEG Sbjct: 997 LAWSMPGVEAAGYEIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDC 1056 Query: 670 AKRYRK 675 RYRK Sbjct: 1057 MYRYRK 1062 >gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e] gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e] Length = 461 Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 158/452 (34%), Positives = 233/452 (51%), Gaps = 23/452 (5%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYL-----RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N L F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---HVQAWQLFGEYCKRDVEA 169 C LN + K + GKALI RF K + + Y R H + W F Y K D+ + Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKN--YKIRRYTADTHPKEWAEFIAYAKSDITS 178 Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 RE++K++ + E + + LDQ INDRG+++D+ L E + + +++L E+ + Sbjct: 179 MREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRK 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + L + L + + + TL +L+ ++ A+ +I RL ++ + Sbjct: 239 YGGSLTGKD---FLPILQELAPAHRIHNAQKSTLNDLLADEDLPDDARTIIEMRLGAAST 295 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 A K L SSD R RG LQ+ GA RT RW+G FQPQNL R ++ L + I AL Sbjct: 296 ASTKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAAL 355 Query: 348 NRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +G D L + VRSCII G+K VVAD + +E R LAW+AGE+ + F G Sbjct: 356 LKGRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAG 415 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQ---RAIGKV 434 DIY T K F D + KE+ R IGK Sbjct: 416 LDIYCVTAGKMFGMDPDDIKKERKDLRQIGKA 447 >gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 560 Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 195/624 (31%), Positives = 292/624 (46%), Gaps = 96/624 (15%) Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 K+ G+ + W CT + + T GLP SL++ L + K+ EGK LI FC Sbjct: 2 KSEGLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGLDKQ--KLTEGKNLIKYFCL---- 55 Query: 142 SPPYDCTRAN----------HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWL 189 P + T+ N + W+LF Y KRDVE + ++L P+ D + Sbjct: 56 --PCNPTKVNGGRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFY 113 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 LDQTINDRG ID V +L + + L ++ +T + + +R +L Sbjct: 114 LDQTINDRGIEIDSLFVESAIKLDQEVKTHLMSELKHVTG--LENPNSVLQMRSWL-KEH 170 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 G+++ + + + L +LA+ L L R + S++ K + A D R RG Sbjct: 171 GLEMESLGKKEVAKELKTVG-KELAEVLRL-RQQLAKSSVKKYTAMKNAACMDYRERGMF 228 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQE-----RSEEILTQ-TIQALNR-GETIADPLGLASD 362 +FYGA+RTGR++G + Q QNLP+ + ++ Q ++AL E I D L S Sbjct: 229 RFYGANRTGRFAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTL---SQ 285 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ I G K +VAD + IEARVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++ Sbjct: 286 LIRTAFIPRTGFKFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVE 345 Query: 423 K--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 K V+ R GK+ ELALGY G K M + LD+ + ++ Sbjct: 346 KHGVNGHLRQKGKIAELALGYGGSVGALKAMGA---LDMGLTEEELQP------------ 390 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + AWR + V LW D+ V E S+ Sbjct: 391 -------------------------LVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISV-- 423 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--------CSYLNT-ATSQLMRER 591 R N+ V + I LPS R L Y + + +Y +T + R Sbjct: 424 -RTHNI---VFTYKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLE 479 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 +YG K ENI QAI+RDIL M+ T Y IV VHDE + ET SV ++C LM Sbjct: 480 SYGPKFVENITQAIARDILLYAMQ--TLKEYRIVAHVHDEAIIETDKN--VSVQSVCELM 535 Query: 652 TKNPSWAKGLPLKAEGYEAKRYRK 675 + P WA+GL L+A+GYE + Y+K Sbjct: 536 GRTPPWAEGLVLRADGYECEFYKK 559 >gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68] Length = 385 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 141/378 (37%), Positives = 204/378 (53%), Gaps = 8/378 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ R +S ++ K L + V Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMKGV 304 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 364 Query: 357 LGLASDCVRSCIIASNGK 374 + L S +R CIIA GK Sbjct: 365 MELTSSALRGCIIAPTGK 382 >gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 328 Score = 220 bits (561), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 180/333 (54%), Gaps = 16/333 (4%) Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGED 407 +A + LAS +R CI+A GKKLVV+DL+ IE R+LAW+AGE WK+ AF G D Sbjct: 1 MASVMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPD 60 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +Y YA+AFN + V+K QR IGKVMEL LG+ GG F T A GLDL++ + Sbjct: 61 LYKLAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAAL 120 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + +A+ + + + + +++ AC+ +K+ WR H W L Sbjct: 121 PNIPRDVQREAKGWYDESVKRKATYGLSERVF-IACDSLKRLWRRAHPETCDFWYQLERT 179 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NT 582 + + + L +RR + I LPS R L Y KG+ +Y+ N+ Sbjct: 180 VRTAIA-----TPAKTLYCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINS 234 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 + + R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE++ E PDT + Sbjct: 235 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDY 294 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + L SL++ NP WA +PL A G+EA YRK Sbjct: 295 TDAALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327 >gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 237/466 (50%), Gaps = 43/466 (9%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + G + YA+ + L YA D PVK+ D T+ +PS ++ Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 K+ GK L+ FC T+AN + WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCTSC------KPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 E+ ++ P+ E + + +DQ INDRG RID LV +K Q+ + + + Sbjct: 173 VEMEITQKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQ 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ +L G++ +++ ++ +L + T + + L L +L Sbjct: 233 LTGLAN-----PNSPLQLKNWLHQ-QGVETDSLAKASVAQLLQTTTGT-VHQVLALRQLL 285 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S S++ K + +A+ DG + G LQFYGA+RTGRW+G + Q QNLPR + L + Sbjct: 286 SK-SSVKKYQAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPD--LEEA 342 Query: 344 IQALNRGETIADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + +G T A + + S +R+ I S G VAD + +EARV+AW++GE+W Sbjct: 343 RALVKQGNTTALAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEW 402 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGY 441 + AFA EDIY + ++ F P+ K ++ E R GK+ ELALGY Sbjct: 403 RQAAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGY 448 >gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 153/467 (32%), Positives = 242/467 (51%), Gaps = 45/467 (9%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEYCKRDVE 168 K+ GK L+ FC P T+AN + WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 E+ ++L P+ E + + +DQ INDRG RID LV +K Q + + + ++ Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ +L GI +S+ ++ +L + T + + L L +L Sbjct: 233 LTGLAN-----PNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT-VHQVLALRQLL 285 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338 S S++ K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR E + E Sbjct: 286 SK-SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARE 344 Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++ Q + AL +++ D L S +R+ I S VAD + +EARV+AW++ E Sbjct: 345 LVKQGNVPALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEK 401 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGY 441 W+ ++FA EDIY + ++ F P+ K ++ E R GK+ ELALGY Sbjct: 402 WRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGY 448 >gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905] Length = 533 Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 146/419 (34%), Positives = 213/419 (50%), Gaps = 15/419 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A +GLP SL C L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 124 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++ RL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWN 184 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 185 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+++ RL +S ++ K L + V Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKEMLAIRLQASTTSTSKYKALMKGV 304 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+A N L + Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAPNAAAKTLKCLQI 364 Query: 360 ASDCVRSCIIAS----NGKKLVVADLAGIEARVLAWIAGEDWK------IKAFANGEDI 408 AS V + S + KL D EA + WK +KAF G + Sbjct: 365 ASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 423 >gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 362 Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 195/349 (55%), Gaps = 5/349 (1%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A DEPV +WD T +PS L + + D Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIAD 64 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + P +RW T V A + LP +L C L + Sbjct: 65 PDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQDK 124 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 K +EGK+LI FCK +S T H WQ F Y D+EA RE++KRL Sbjct: 125 AKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG+ +D+DLV + + +K+L E V++T+G ++++ Q Sbjct: 185 YQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQRD 244 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 A+ ++ G++L DM + T++ ++ ++ K+L+ RL +S ++ K TL ++V Sbjct: 245 AMIKHIVESYGVELPDMQKSTIERRIADPDLPPAVKELLHIRLQASATSTSKYKTLLKSV 304 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 SSDGRLRGTLQF GASRTGRW+G +FQPQNL R+ S E + I+ + Sbjct: 305 SSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMK 353 >gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 422 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 154/421 (36%), Positives = 205/421 (48%), Gaps = 60/421 (14%) Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETIADPLGLA 360 R R + Y TGRW+G +FQP NLPR S+ ++ I A+ G D + L Sbjct: 12 RCRFPISLY----TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALT 67 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN---------------- 404 S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 68 SSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEA 127 Query: 405 ------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 G+DIY YA +F V+KEQR IGKV ELALG Sbjct: 128 ITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALG 187 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y GG F A+ +DL+ ++ E E+ +Q P F + D+ Sbjct: 188 YGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANQRPTFGLSDRAW- 245 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 AC++ K+AWR H + W+ L FA G +A + ++ + + + Sbjct: 246 LACDVFKRAWRNAHPAIAAFWQALQ--FAATDAIGHPETAHTCCGI---TVQYSRAWLRL 300 Query: 561 VLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGM 614 LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 301 RLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACM 360 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 GY IVLTVHDE+++E D F+ L +LM P WA+GLPL AEG++ RYR Sbjct: 361 PAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYR 420 Query: 675 K 675 K Sbjct: 421 K 421 >gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 422 Score = 209 bits (533), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 154/421 (36%), Positives = 204/421 (48%), Gaps = 60/421 (14%) Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETIADPLGLA 360 R R + Y TGRW+G +FQP NLPR S+ ++ I A+ G D + L Sbjct: 12 RCRFPISLY----TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALT 67 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN---------------- 404 S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF + Sbjct: 68 SSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEA 127 Query: 405 ------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 G+DIY YA +F V+K+QR IGKV ELALG Sbjct: 128 ITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALG 187 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y GG F A+ +DL+ ++ E E+ +Q P F + D+ Sbjct: 188 YGGGVGAFAAFAAMYHIDLEAMAEQAALPPLLLQ-EAVEALQWTKANQRPTFGLSDR-AW 245 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 AC++ K+AWR H + WK L FA +A + M+ + + + Sbjct: 246 LACDVFKRAWRNAHPAIAAFWKALQ--FAATDAIRHPETAHTCCGI---TMQYSRAWLRM 300 Query: 561 VLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 301 HLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACM 360 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 GY IVLTVHDE+++E D F+ L +LM P WA+GLPL AEG++ RYR Sbjct: 361 PAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYR 420 Query: 675 K 675 K Sbjct: 421 K 421 >gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 377 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/329 (38%), Positives = 170/329 (51%), Gaps = 45/329 (13%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F +Y +RDV A R++ KRL + E LW LDQTINDRG +D DL + Sbjct: 3 WAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + ++ L E LT G+++++ Q AL +L G+ L DM + T++ L + + Sbjct: 63 ERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+E +T I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242 Query: 391 WIAGEDWKIKAFA----------------------------------------NGEDIYV 410 W+AGE K+ AF G+DIY Sbjct: 243 WLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYK 302 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 YA +F V+K+QR IGKV ELAL Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELAL 331 >gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul] gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul] Length = 693 Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 195/733 (26%), Positives = 314/733 (42%), Gaps = 110/733 (15%) Query: 6 IDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 +D E+RS + LP G+ Y+ E I + +++++ V+ W+ P+++ + L D Sbjct: 7 LDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWE-IRDGKFPAEVREALED 65 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ A N+ FER++ ++ L I+ P K W CT A +L+ L + Sbjct: 66 PNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQDKV 125 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQ---------AWQLFGEYCKRDVEATRELF 174 K+ GK LI F K P T+ N + W F Y ++DV A + Sbjct: 126 KLATGKKLINLFSK------PQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAID 179 Query: 175 KRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + L P D E +L+ LDQ INDRG +DLD + + + +L + +T + Sbjct: 180 EWLAPYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITG--L 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN----ITQLAKDLILNRLASSGSA 288 + L+ ++ G D+ + T+K +L+ +T +++ R+ S+ ++ Sbjct: 238 ENPNSPQQLKPWV-KARGYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTS 296 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE---------- 338 + K V RLR LQF GA RT RW+G Q NL R ++ E Sbjct: 297 VGKYKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALC 356 Query: 339 ILTQTIQALNR---GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +T I+A + G + +P+ + CVRS I A G + V DL+ IE V+AW+A Sbjct: 357 TVTNAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADC 416 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + F G Y + + +V+ + R + K L GY+ G Sbjct: 417 QPLLNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRT 476 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 GL W AE+ + M Q +V K +R + Sbjct: 477 GL-----------------WGYAENMGIDMSRQEAHDSV-------------KMYREAYP 506 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V QLWKDL A +++ +I + V V + + +LPS RR+ Y + Sbjct: 507 EVPQLWKDLE---AAIIR---TIKTKAVTRVRYVSFEIVGEFLVAILPSGRRMYYHRPRI 560 Query: 576 D-----------------------------CSYL--NTATSQLMRERTYGGKLTENIVQA 604 + SY+ N + +R+ ++GGK+TEN+VQA Sbjct: 561 EKKKFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQA 620 Query: 605 ISRDILCEGMKNATKNGYDIVLTVHDEIVS--ETPDTPYFSVGTLCSLMTKNPSWAKGLP 662 I+R+IL G+ NA K G +IVL VHDEIV+ + D + L MT W + +P Sbjct: 621 IAREILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASK-GLHVLKECMTAKRKWYEEMP 679 Query: 663 LKAEGYEAKRYRK 675 + A G+ A YRK Sbjct: 680 VGAAGWSAAFYRK 692 >gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterococcus sp. 7L76] Length = 545 Score = 200 bits (508), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 148/476 (31%), Positives = 231/476 (48%), Gaps = 45/476 (9%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ Y+E I L AY+ D PV++ D +P+++L Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L DETV+ A N+ FER+ + LG+D + + W CT V T GLP SL L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HVQA-WQLFGEYCKRD 166 ++ K+ EGK LI FC P + T+ N H W F Y RD Sbjct: 121 GLNKQ--KLTEGKDLIRYFC------VPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRD 172 Query: 167 VEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 VE + +L P+ D + LDQ INDRG ID D V +L + L++ + Sbjct: 173 VEVEIAIQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQL 232 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +LT + + +R +L L G++ + + + +L L + L+L R Sbjct: 233 QELTG--LENPNSVLQMRGWL-LDHGLETESLGKKAVDELLEQPIDENLKQVLVL-RQQL 288 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + S++ K + SD R RG QFYGA+RTGR++G QNLP+ S+ +++ Sbjct: 289 AKSSVKKYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSL 348 Query: 345 QALNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E + G + S+ +R+ + G K +V+D + IEARV+AW++GE W+ + Sbjct: 349 VKQSNFEMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQE 408 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV-------------SKEQRAIGKVMELALGYQG 443 F NG DIY + ++ F P++K SK + +++ +A+G QG Sbjct: 409 VFKNGGDIYCASASQMFGVPVEKHGVNGLTGRLEELDSKLKELESEIISMAIGGQG 464 >gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 971 Score = 194 bits (493), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 159/487 (32%), Positives = 234/487 (48%), Gaps = 61/487 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ YAE I L YA D V++ D + +P ++L Sbjct: 1 MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL-----GID---------------IPSKRWICTSV 98 L D+TV A N+ FER+ + L +D + W C+ V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH------ 152 + GLP SL+ LN KM+EG+ LI FC P TR N Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCV------PCKETRTNGGRTRNL 172 Query: 153 ----VQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + W F Y KRDVE + +RL P+ + + + LDQ INDRG IDL+L Sbjct: 173 PQHALDKWNQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELA 232 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-GIDLVDMSEGTLKSIL 265 + + A+ R+ L + + T G+ L+M +L G+ + + +K +L Sbjct: 233 KQAVAMDAKSRESLMAALKEKT-GL---ENPNSVLQMLGWLEDHGLKTDSLGKKQVKELL 288 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + + ++ R + S++ K + AV DGR RG QFYGA+RTGR +G Sbjct: 289 KTAQ--EPLRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHI 346 Query: 326 QPQNLPRQ------ERSEEILTQTIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVV 378 Q QNLP+ E E + +AL+ ++I D L S +R+ + G K VV Sbjct: 347 QLQNLPQNHLPDLSEARELVRQGNYEALDLLYDSIPDVL---SQLIRTAFVPRAGMKFVV 403 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVME 436 +D + IEARV++W+AGE WK AFA G+DIY +T ++ F P+ K V+ E R GK+ E Sbjct: 404 SDFSAIEARVISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAE 463 Query: 437 LALGYQG 443 LA +G Sbjct: 464 LACIAEG 470 Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 86/177 (48%), Gaps = 19/177 (10%) Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 ++WR+ + ++ W + +++ + + V + M + I LPS R+ Sbjct: 804 QSWRSANPHIVDFWWQVDGAVKTAIKQRIPVWVNNIRFVCQSGM------LFIELPSGRQ 857 Query: 568 LVYSDVK-GDCSYLNT--------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 L Y + G+ + AT + R +YG K ENIVQ +RDILC M+ T Sbjct: 858 LSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIVQGTARDILCYAMQ--T 915 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E + SV +C M++ P WA+GL L+A+GYE Y+K Sbjct: 916 LRCCAIVGHVHDELIIEC--SKEVSVDAICEQMSRTPPWAEGLVLRADGYECAFYQK 970 >gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 470 Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 156/532 (29%), Positives = 247/532 (46%), Gaps = 86/532 (16%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV---LKLQELIAQERKKLDED 223 +E T++L P+ E + + +DQ INDRG RID LV +K Q + + + ++ Sbjct: 1 MEITQKL--ECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 58 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ +L G +S+ ++ +L + ++ + L L +L Sbjct: 59 LTGLAN-----PNSPLQLKDWL-QQQGAKTDSLSKASVAQLL-QTTTGKVHQILALRQLL 111 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ-----ERSEE 338 S S++ K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR E + + Sbjct: 112 SK-SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARK 170 Query: 339 ILTQ-TIQALNR-GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 ++ Q + AL +++ D L S +R+ I S VAD + +EARV+AW++ E+ Sbjct: 171 LVKQGNVTALAMLYDSVPDVL---SQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEE 227 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 W+ +AFA EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M + Sbjct: 228 WRQEAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMGA- 286 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL--VKKAWRA 512 KL+ T EL + + WR Sbjct: 287 -----------------------------------------TKLVLTDDELPPLVQMWRN 305 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 ++Q W D+ + +E + + + + R + + L S R L Y Sbjct: 306 ASPHIVQFWWDVDKA----AKECIKTHLPQTTHGMKFIYRSGC--MFLRLRSGRYLCYPK 359 Query: 573 VKGDCSYLNTATSQLM---------RERTYGGKLTENIVQAISRDILCEGMKNATKNGYD 623 K + + + M R TYG KL ENIVQA SRD+L E M+ Sbjct: 360 PKIGTNRFGSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENT 419 Query: 624 IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V+ +HDE V + P S+ T+ LMT+ P WA GL L A G+ + Y+K Sbjct: 420 VVMHIHDEAVIDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469 >gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage] Length = 234 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 8/218 (3%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 DM TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GA Sbjct: 1 DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCGA 60 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLASDCVRSCIIAS 371 SRTGRW+G +FQP NLPR ++ + + ++AL G E I D + L S +R CIIA Sbjct: 61 SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSK 426 GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+AFN V+K Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVTK 180 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAE 218 >gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae] gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 190 bits (483), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 141/218 (64%), Gaps = 8/218 (3%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 DM TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GA Sbjct: 1 DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGA 60 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLASDCVRSCIIAS 371 SRTGRW+G +FQP NLPR ++ + + ++AL G E I D + L S +R CIIA Sbjct: 61 SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSK 426 GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y YA+AF + V+K Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTK 180 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAE 218 >gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c] gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c] Length = 312 Score = 190 bits (483), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 108/252 (42%), Positives = 146/252 (57%), Gaps = 5/252 (1%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F EY +RDV A R++ KRL + E LW LDQTINDRG ID DLV + Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + ++ L + LT G ++++ Q AL +L G+ L DM + T+ + + + Sbjct: 63 ERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVDDPALPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+E++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRVLA 242 Query: 391 WIAGEDWKIKAF 402 W+AGE K+ AF Sbjct: 243 WLAGETPKLHAF 254 >gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 102/218 (46%), Positives = 140/218 (64%), Gaps = 8/218 (3%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 DM TL+ ++ +I + ++L+ RL S ++ K L ++VS DGRLRGT QF GA Sbjct: 1 DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGA 60 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLASDCVRSCIIAS 371 SRTGRW+G +FQP NLPR ++ + + ++AL G E I D + L S +R CIIA Sbjct: 61 SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSK 426 GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y YA+AFN V+K Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTK 180 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 QR IGKVMEL LGY GG F T A GL+L + ++ Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAE 218 >gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage] Length = 234 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/218 (46%), Positives = 139/218 (63%), Gaps = 8/218 (3%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 DM TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GA Sbjct: 1 DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGA 60 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG--ETIADP-LGLASDCVRSCIIAS 371 SRTGRW+G +FQP NLPR ++ + + ++AL G E I D + L S +R CIIA Sbjct: 61 SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA-----NGEDIYVTTYAKAFNTPIDKVSK 426 GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+AF V+K Sbjct: 121 XGKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTK 180 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAE 218 >gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 384 Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 186/389 (47%), Gaps = 56/389 (14%) Query: 336 SEEILTQTIQALNRG---ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLAW+ Sbjct: 2 SQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWL 61 Query: 393 AGEDWKIKAFAN----------------------------------------GEDIYVTT 412 AGE K+ AF + G+DIY Sbjct: 62 AGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRA 121 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 YA +F V+KEQR IGKV ELALGY GG F A+ +DL+ ++ Sbjct: 122 YAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQAALPPLL 181 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 E E+ +Q P F + D+ AC++ K+AWR H + WK L FA Sbjct: 182 LQ-EAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQ--FAATD 237 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQ 586 +A + M+ + + + LPS R L Y+ D G SY+ T T + Sbjct: 238 AIRHPETAHTCCGI---TMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRK 294 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F+ Sbjct: 295 WTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAH 354 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +LM P WA+GLPL AEG++ RYRK Sbjct: 355 LAALMATPPPWAQGLPLAAEGFQTHRYRK 383 >gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] Length = 419 Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 135/415 (32%), Positives = 220/415 (53%), Gaps = 43/415 (10%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L K GV+AYA+ I L AY++DDE K+ D + + ++ L Sbjct: 9 LAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKNAL 68 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D ++ A N+ FER K +G+ + + W+CT+V + LP SL+ L SE Sbjct: 69 SDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLSEQ 128 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRAN---------HV-QAWQLFGEYCKRDVEATR 171 K++EGK LI FC P T+ N H + W+ F YC RDV+ + Sbjct: 129 --KLKEGKDLIRYFC------VPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEK 180 Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV---- 225 + ++L P+ + E + LDQ INDRG +D +LV ++ I + L +DIV Sbjct: 181 GIRQKLHKFPIPESEMAFYRLDQEINDRGVLVDRELV---EQSITCDL--LHKDIVTNRA 235 Query: 226 -KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++T + + L+ +L G+++ +S+G + ++ ++ ++ + L L RL Sbjct: 236 YEVTG--LENPNSVSQLKGWLSE-RGVEIDSLSKGAVAELIEDAD-GEVLEALKL-RLLM 290 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + +++ K + +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ S+ L +++ Sbjct: 291 AKTSVKKYEAIERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSL 350 Query: 345 QALNRGETI-----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + E + + P + S+ +R+ I G + +VAD + IEARVLAW++G Sbjct: 351 VRRGQFEELELFYESTP-NVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404 >gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012] gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012] gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74] Length = 449 Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 121/333 (36%), Positives = 171/333 (51%), Gaps = 13/333 (3%) Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDC 147 P +RW T V A +GLP SL C L + K +EGKALI FCK +S Sbjct: 7 PVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA 66 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDL 205 T H + W+ F Y D+EA RE++ RL E LW DQ INDRG +D+ L Sbjct: 67 TSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMDMQL 126 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 E + QE+K+L + ++TDG ++++ Q AL ++ G++L DM TL+ + Sbjct: 127 ARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRI 186 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 ++ ++ K+L+ RL +S ++ K L + VS DGRLRGTLQF GASRTGRW+G +F Sbjct: 187 ANPDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLF 246 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADL 381 QPQNLPR +E + + I+A N L +AS V + S + KL D Sbjct: 247 QPQNLPRPSLKQEQIDEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 306 Query: 382 AGIEARVLAWIAGEDWK------IKAFANGEDI 408 EA + WK +KAF G + Sbjct: 307 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 339 >gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1] gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 516 Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 129/446 (28%), Positives = 202/446 (45%), Gaps = 84/446 (18%) Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 +I A+ + R ++ ++ KL + + DGR RG YGA TGRW+G + Q Sbjct: 117 GDIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGAG-TGRWAGRLIQL 175 Query: 328 QNLPRQERSEEILTQTIQALNRGET------IADPLGLASDCVRSCIIASNGKKLVVADL 381 QNLPR + L I + G+ PL + S +R C+I + G + +D Sbjct: 176 QNLPRGSVKKADLA--IPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDF 233 Query: 382 AGIEARVLAWIAGEDWKIKAF-----ANGEDIYVTTYAK-------AFNTPIDKVSKEQR 429 + IE R+ AW+A E+WKI+AF G D+Y+ K + P+++ S+E+ Sbjct: 234 SNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAHPLNENSQERT 293 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 GKV ELALG+ GG F++MA+ G+ + T E+ +Q Sbjct: 294 PYGKVPELALGFGGGVGAFQSMAAIYGMKV-----------TDEEADQ------------ 330 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 +K AWR H V+ LW+++ + + G + + + + Sbjct: 331 ----------------IKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVSTAGGRIKYV 374 Query: 550 VMRRHKRDVHIVLPSSRRLVYSD------------------VKGDCSYL--NTATSQLMR 589 V + +VLPS R L Y+ +K +++ N+ T + R Sbjct: 375 VKGGF---LWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMSVNSITRKWER 431 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 TYGG L EN +QAI+RD+L + GY +V+ VHDE ++E SV S Sbjct: 432 CTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEIRKG-VGSVDEFKS 490 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 +M P+WA GLP+ A G+ RYRK Sbjct: 491 IMCDTPAWAAGLPVAAAGWRGSRYRK 516 >gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1] gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 524 Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 131/464 (28%), Positives = 212/464 (45%), Gaps = 85/464 (18%) Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 G++ +++ ++ +L+ +I A+ + R ++ ++ KL + + DGR RG Sbjct: 108 GVETEGVAKAAVRQMLA-GDIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLH 166 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET------IADPLGLASDC 363 YGA TGRW+G + Q QNLPR + L I + G+ PL + S Sbjct: 167 LVYGAG-TGRWAGRLIQLQNLPRGVIKKADLA--IPLIIDGDIDLVSMLFGPPLDVISSN 223 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-----ANGEDIYVTTYAKA-- 416 +R C+I + G + +D + IE R+ AW+A E+WKI+AF G D+Y+ K Sbjct: 224 LRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILT 283 Query: 417 -----FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 + P+++ S E+ GKV ELALG+ GG F++MA+ G+ + T Sbjct: 284 LLKVLYAHPLNENSPERTPYGKVPELALGFGGGVGAFQSMAAIYGMKV-----------T 332 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 E+ +Q +K AWR H V+ LW+++ + Sbjct: 333 DEEADQ----------------------------IKVAWREAHPRVVALWRNMEDAAFNA 364 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS------------------DV 573 + G + + + +V + +VLPS R L Y+ + Sbjct: 365 ISNPGRVVSTAGGRIKYVVKGGF---LWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKL 421 Query: 574 KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 K +++ N+ T + R TYGG L EN +QAI+RD+L + GY +V+ VHDE Sbjct: 422 KDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDE 481 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++E SV S+M P+WA GLP+ A G+ RYRK Sbjct: 482 ALAEVRKG-VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 524 >gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C] Length = 686 Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 183/721 (25%), Positives = 300/721 (41%), Gaps = 151/721 (20%) Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW--------ICTSVLARTNGL 105 P+DL+ ++ + + A N FE ++ L S+ W C AR L Sbjct: 17 PTDLIDHIANGGPI-AAWNITFEFWIWNMVLA---KSEGWPWLQLEQCYCDMAKARRFSL 72 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG----- 160 P SL A AL +E K ++GK LI + C+ P T+A W L+ Sbjct: 73 PGSLDTAAKALRTAE---KDKKGKQLIGKLCR------PVSATKARPEPRWTLYTAPQDY 123 Query: 161 ----EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 YC +DV++ + + ++ ER+ WL DQ IN RG +D++ + +++ Q Sbjct: 124 ADLYRYCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNALDIVGQT 183 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 ++ ++ +T+G + S + L +L + G + ++ T+ L ++ A+ Sbjct: 184 TRRFTMELAAITNGAVGSVSEVAKLTDFLATV-GCRMHNLKSETVAETLERDDLNPTARR 242 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ R A +G+ + KL +L +SSDGRLR F+GA TGRWS Q QNL S Sbjct: 243 ILEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNL----TS 297 Query: 337 EEILTQTIQALNR--GET----IADPLGLASDC--------------------------- 363 + ++T R G++ + GL +C Sbjct: 298 KGPKSKTCNGCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKHRN 357 Query: 364 ------------------VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA+ GKK V D + IEA VLA +A +W+I+ F Sbjct: 358 LDLIIDIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFRTH 417 Query: 406 EDIYVTTYAKAFNTPIDKV--SKEQ--------RAIGKVMELALGYQGGAKVFKTMASHC 455 IY + +K P +++ KE+ +++GKV ELA GY G +K + Sbjct: 418 GKIYEMSASKISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGAE- 476 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 FED + + L +D PE + + W +++ Sbjct: 477 --------------EHFEDDDAMKKAILGWRDASPE--------------IVEFWGGQYR 508 Query: 516 GVLQLWKDLTEGFACVVQEGGSISA----RRVANVPRLVMRRHKRDVHIVLPSSR----- 566 K + E + EG I A + V + ++ LPS R Sbjct: 509 RDPYTRKWVREYYGL---EGAVIMAILNPGKCYAVGDITYAVFDDVLYCRLPSGRFLQYH 565 Query: 567 --RLVYSDVKGDCSY------LNTATSQ----LMRERTYGGKLTENIVQAISRDILCEGM 614 +L+ SD Y NT + + +R TYGG+L EN+ QA + D+ M Sbjct: 566 QPKLIESDSWKGPEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQAAAADVQAYAM 625 Query: 615 KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 K NGY +V+ HDE+++E P + SV + +LMT W + P++A G+E RY+ Sbjct: 626 KQCENNGYPVVMHTHDELIAEVPGD-FGSVEEMAALMTGREPWREWWPIRAAGWEDDRYQ 684 Query: 675 K 675 K Sbjct: 685 K 685 >gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 352 Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 119/371 (32%), Positives = 170/371 (45%), Gaps = 67/371 (18%) Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 S S++ K + + +D R G LQFYGA+RTGRW+G + Q QNLPR + +++ Sbjct: 28 SRSSVAKYRKMIDVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLAQARSL 87 Query: 345 QALNRGET-------IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 GET + D L S +R+ I S G + +VAD + IEARVLAW+AGE+ Sbjct: 88 VRDGNGETLEMLYSSVPDTL---SQLIRTAFIPSKGHRFIVADYSAIEARVLAWLAGEET 144 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AF NGED+Y T + F P++K V+ E R GK+ LA GY G K M Sbjct: 145 TLAAFKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG--- 201 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 A+K L + + AWRA + Sbjct: 202 -------------------------------------ALKMGLSEDELQPIVDAWRAANP 224 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 ++QLW D+ + G R + L + + I LPS RRL Y Sbjct: 225 NIVQLWHDVDNAATRAISTG------RPVTLGNLGFEKKSGMLFINLPSGRRLAYVKPGI 278 Query: 575 GDCSYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 G + T+ + + + TYGGKL ENIVQA +RD+L E + G+ IV+ Sbjct: 279 GMNRFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEAITRIENAGHRIVM 338 Query: 627 TVHDEIVSETP 637 +HDE+V + P Sbjct: 339 HIHDEVVIDEP 349 >gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 368 Score = 173 bits (438), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 131/418 (31%), Positives = 191/418 (45%), Gaps = 76/418 (18%) Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 RL S +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L Sbjct: 3 RLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTEL 61 Query: 341 TQTIQALNRGETIAD--------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + + L + + D P L S VR+ A G +L V+D + IEARV+AW Sbjct: 62 -EIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWY 120 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKT 450 A E W++ F IY + ++ FN P++ ++K R GKV ELALGYQGGA K Sbjct: 121 AKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKA 180 Query: 451 MAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 M + G++ + V S Sbjct: 181 MGALEMGIEENELQGLVDS----------------------------------------- 199 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR + ++ WK AC ++ +R+ + L K + I LPS R L Sbjct: 200 WRNANPNIVNFWK------ACQEAAINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALA 253 Query: 570 YSD-VKGDCSY-----------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 Y + G+ S+ LN S+L +TYGGKL ENIVQA +RD+L + Sbjct: 254 YPKALVGENSWGSQVVEFMGLDLNRKWSKL---KTYGGKLVENIVQATARDLLAISIARL 310 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G+ IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 311 EALGFKIVGHVHDEVIVEIPRGSN-GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367 >gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 952 Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 178/385 (46%), Gaps = 69/385 (17%) Query: 311 FYGASRTGR-W----SGCVFQPQNLPRQERSEEILTQTIQALNRGETIA----DPLGLAS 361 F+ R GR W SG + Q QNL R + L +++ E++ P + S Sbjct: 616 FFLVRRNGRVWVTGNSGRLIQVQNLRRNNLQDLDLARSLVRNKEYESLEMLYDSPSDVLS 675 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R+ I G + +V+D + IEARVLAW+AGEDW + AF NGEDIY +T ++ F P+ Sbjct: 676 QLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGVPV 735 Query: 422 DK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 K V+ + R GKV LA GY G K M Sbjct: 736 VKHGVNGDLRQKGKVATLACGYGGSVGALKAMG--------------------------- 768 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 A++ L + + +WR + ++ LW D+ VV+ Sbjct: 769 -------------AIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSVVKRVVK------ 809 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT---------SQLMRE 590 R LV+ K + I LPS RRL Y K + + ++ + Sbjct: 810 TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVVGNKWDKI 869 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 +YGGK ENIVQAI+RDIL E M K G++IV+ +HDE+V E+ + S+ + + Sbjct: 870 ESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIESDSS---SIEEINEI 926 Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675 M+ PSWA GL L A+G+E++ Y+K Sbjct: 927 MSLVPSWAPGLILDADGFESEFYKK 951 Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 109/331 (32%), Positives = 172/331 (51%), Gaps = 21/331 (6%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M KL ID+ET S L K GV+ YAE I L AY+ DD VK+ D + +P ++L Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+++ A N+ FER+ + LG + + W CT + + GLP SL+ L Sbjct: 61 SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + KM EGKALI F CK + + +H ++ W F EY +RDVE E+ Sbjct: 121 DKQ--KMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRID---LDLVLKLQELIAQERKKLDEDIVKLTD 229 K+L P+ E + + +DQ INDRG ID +D +K E++ +E + ++LT Sbjct: 179 KKLSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENM---DRAIELTG 235 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L+ +L G+++ +++ ++S L N K+++ R S S++ Sbjct: 236 --LENPNSPMQLKEWLNE-KGLEIDSLAKKDVESAL--KNAEGDIKEVLELRQELSKSSV 290 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 K + + +D R+RG LQFYGA+RTGR+ Sbjct: 291 RKYDAMKNVKGNDKRVRGLLQFYGANRTGRY 321 >gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] Length = 356 Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 178/400 (44%), Gaps = 65/400 (16%) Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A +D R RG QFYGA+RTGRW+G + Q QNLP+ + + + + Sbjct: 6 KYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIGDY 65 Query: 351 ETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 ++++ D S +R+ IA G K VAD + IEARV+A +AGE W+ F NG Sbjct: 66 DSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKNGG 125 Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ F+ ++K ++ R GK+ ELALGY G K M Sbjct: 126 DIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG------------ 173 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ L + + AWR + ++ LW D Sbjct: 174 ----------------------------ALEMGLTEDELQPLVDAWRQSNPNIVALWWDF 205 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT- 582 ++ S ++ + R M + I LPS R+L Y + G+ + Sbjct: 206 DTAIKNAIKMHCSTASHGIKFTWRSGM------LLITLPSGRKLTYVKPRIGENKFGGES 259 Query: 583 -------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 AT + R YG K EN+VQAISRD+L MK T + I VHDE++ E Sbjct: 260 VTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMK--TLSHCFICGHVHDELIIE 317 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + S+ LC M + P W + L+A+GY + Y+K Sbjct: 318 CSEK--VSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355 >gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3] gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3] Length = 656 Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 189/703 (26%), Positives = 304/703 (43%), Gaps = 84/703 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAY-AEQAVITLCAYAW---DDEPVKLWDRTEQSAMPSDLLQ 59 LF+D ET S L + G+ Y A+Q+ C + + LW+ ++ +P + + Sbjct: 6 LFLDFETSSHTDLTEHGLGRYLADQSTRAYC-FTFRLPGMSTADLWEVGQR--VPEVITR 62 Query: 60 YLRDETVMCVAHNSLFE----RILFKKTLGI-DIPS---KRWICTSVLARTNGLPSSLKN 111 ++R + VAHN+ F+ + ++ G D+P + C++ AR NGLP SL Sbjct: 63 HVRAGHLF-VAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAG 121 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 AC AL + K EG A++ K +P D T A+H + + +Y D +A Sbjct: 122 ACEALGLP--VQKDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMV 173 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +++ +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG Sbjct: 174 GVWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGG 233 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + + ++ Y + G D+ D TLK I + N+ + LI RL +S + Sbjct: 234 VLAVSEVEKIKTYAATL-GEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKS 292 Query: 292 LNTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCV-----FQPQNLPRQERSEEILTQT 343 L V GRL+ + ++GA T R +G +P+ + E IL Sbjct: 293 AAILRAHVG--GRLQHSTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDAC 350 Query: 344 IQ---ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKI 399 ++ A + L +D R A+ G LV ADL+GIEAR WIAG+ + Sbjct: 351 LRHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELL 410 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G D Y A F + V+K+QR IGKV LAL Y GGA F +MA++ G+ L Sbjct: 411 EAFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVHL 470 Query: 460 --QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 +Q + V + FE W + + M P + + C V Sbjct: 471 PPEQVDEIVLNWRAARPAFERWWSLCEYSVLMALDQPNREITMPIGRDFCSHVTFV---- 526 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 H G L L G A + + ANVP +Y Sbjct: 527 HDG-RALRMQLPSGRA-ISYHNARLHLEPGANVP-------------------IAIYDKP 565 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +G Y+ T ++ L+ N+ Q ++RD+ + + + IV V+DE + Sbjct: 566 EG---YIETLDRKI---------LSNNMTQGLARDLFWSVLLDVDRV-EQIVHHVYDEAL 612 Query: 634 SET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E + L M + +W GLPL AEG+ R+RK Sbjct: 613 LEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655 >gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43] gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43] Length = 656 Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 179/707 (25%), Positives = 295/707 (41%), Gaps = 92/707 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQYLR 62 LF+D E S L + G+ Y + + + + D E + +P ++ +L Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWEYGNVVPKQIVMHLT 65 Query: 63 DETVMCVAHNSLFE----RILFKKTLGI-DIPS---KRWICTSVLARTNGLPSSLKNACL 114 + VAHN+ F+ ++ ++ G D+P + C++ AR NGLP SL AC Sbjct: 66 SGGLF-VAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 124 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL + K EG A++ K +P D T +H + + +Y D +A ++ Sbjct: 125 ALGLP--VQKDTEG----AKWMKEIAANP--DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG I + Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + ++ Y + G D+ D TLK I + N+ + LI RL +S + Sbjct: 237 VTEVAKIKEYAATL-GEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 295 Query: 295 LSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNR 349 L V GRL+ ++GA T R +G Q N PR + + A R Sbjct: 296 LRAHVG--GRLQHHTIYHGALSGRSTARGAGGA-QTLNTARPRPGKKTADCEAILDACLR 352 Query: 350 GE-------TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401 G+ + L +D R A+ G LV ADL+GIEAR+ W+A + K++A Sbjct: 353 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEA 412 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-- 459 F G D Y ++ D V+K+QR +GK +LALG+ G F +MA++ G+ L Sbjct: 413 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHLPP 472 Query: 460 QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 +Q S+ V FE W W +Y D+ E+V R Sbjct: 473 EQVSEIVYNWRAGRPAFERW--------WSLCEYSALMALDQ---PGREIVMPVGR---- 517 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 N ++ + R + + LPS R + Y + + Sbjct: 518 ----------------------------NNCSQITFVKDARALRMHLPSGRAISYHNARL 549 Query: 576 DCSY-LNTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 N + + Y L+ N Q +SRD+ + + + +IV ++ Sbjct: 550 HLEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRV-EEIVHHIY 608 Query: 630 DEIVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE + E + L M + +W GLPL AEG+ R+RK Sbjct: 609 DEALLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655 >gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] Length = 838 Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 137/498 (27%), Positives = 222/498 (44%), Gaps = 61/498 (12%) Query: 6 IDIETRSPQPLPKVGVWAYA-EQAVITLC-AYAWDDE-PVKLWDRTE------QSAMPSD 56 ID ETRSP + K G + Y+ + A +C AY E VKLW +S P+D Sbjct: 41 IDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPTD 100 Query: 57 LLQYLRDETVMCVAHNSLFER-----ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 L ++ + AHN+ FER I+ + I +W C++ A LP SL+ Sbjct: 101 LFAFIL-AGGLVEAHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLEE 159 Query: 112 ACLALNFSEHLTKMEEGKALIARFCK------GSIDSPPYDCTRANHVQAWQLFG----- 160 A A++ + K EG+ L+ + CK ++ +D A++ G Sbjct: 160 AVAAMDLG--IDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIVY 217 Query: 161 -----------EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 +YCK+DV A L L LS+ E + W +DQ +N RG R DL + + Sbjct: 218 HETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQA 277 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 + ++ RK+L+ + LT GI ++++ A++ +L +DL D + TLK L + Sbjct: 278 LSMASEWRKRLNSILEALT-GITSATKRA-AVKEWLVEEEDLDLPDTAADTLKHYLENEE 335 Query: 270 ITQLAKDLILNRLASSGSAILKLNTL-SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 ++ A+ ++ + ++ K N + +A D R R + ++GA TGRW+G Q Sbjct: 336 LSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKGIQVH 394 Query: 329 NLPRQERSEEILTQTIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLA 382 N P ++ + + + + G+ D + S +R I+A G++L+VAD A Sbjct: 395 NFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADYA 454 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYV------------TTYAKAFNTPIDKVSKEQRA 430 IEAR + W A + + F G+DIY AK + P + R Sbjct: 455 AIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCRQ 514 Query: 431 IGKVMELALGYQGGAKVF 448 GK L LGY G F Sbjct: 515 FGKQAILGLGYGMGYMTF 532 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 17/134 (12%) Query: 558 VHIVLPSSRRLVYSD------------VKGDCSYLNT--ATSQLMRERTYGGKLTENIVQ 603 +H LPS RR+ Y D K Y++ T + +R TYGGK+ ENI Q Sbjct: 706 LHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRTATYGGKIVENITQ 765 Query: 604 AISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL 661 A++RDI+ E M N+ K G YD +++VHDE+V E D + +LM+ P WA G Sbjct: 766 AVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEV-DEDKGDLEEFETLMSDLPIWAAGC 824 Query: 662 PLKAEGYEAKRYRK 675 P+ AE KRYRK Sbjct: 825 PIVAEAERFKRYRK 838 >gi|71902389|ref|ZP_00684353.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71727877|gb|EAO30114.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 300 Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 89/230 (38%), Positives = 118/230 (51%), Gaps = 43/230 (18%) Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 L DM + T++ L + + ++L+ R +S ++ K L S DGRLRGTLQF Sbjct: 13 LPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTSGDGRLRGTLQFN 72 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG---ETIADPLGLASDCVRSCII 369 GASRTGRW+G +FQP NLPR S+ ++ I A+ G D + L S +RSC+I Sbjct: 73 GASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLI 132 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN------------------------- 404 A KKLVVADL+ IE RVLAW+AGE K++AF + Sbjct: 133 APTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHSGEAITHGALRGA 192 Query: 405 ---------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 G+DIY YA +F V+K+QR IGKV ELAL Sbjct: 193 PITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELAL 242 >gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2] gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2] Length = 658 Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 171/658 (25%), Positives = 282/658 (42%), Gaps = 123/658 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWI--------------CTSVLARTNGLPSSLKNACL 114 VAHN+ F+ +++ L RW+ C++ AR NGLP L A Sbjct: 73 VAHNAAFDALIWNDVL------PRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRAAE 126 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL L K EG A + K + +P + T A H + + +Y D + L+ Sbjct: 127 ALGLP--LQKDREGAAAM----KELMHNPEW--TPATHPELFARTYKYALLDTDVMVALW 178 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + P+ E+ W LD IN RG+ +D++ + E+ + +D ++ T G I + Sbjct: 179 EATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKILT 238 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS-----AI 289 + ++ + + G +L + ++K++L+ ++ ++ +D++ RL +S + AI Sbjct: 239 TSVIKQIQSFAAGL-GAELDEAGRESVKALLTRDDVPEVLRDVLTLRLDASRAPKKHDAI 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS--GCV-FQPQNL--PRQERSEEILTQTI 344 L+ + +GR+ + ++GA +GR + GC Q N+ PR R + + Sbjct: 298 LRAHV-------NGRMCHSTVYHGA-LSGRSTAMGCGDVQLLNVARPRPGRKVKDTITYL 349 Query: 345 QALNRGE-------TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGED 396 A R + + PL +D R A+N G LVVADL+GIEAR W+A ++ Sbjct: 350 DAARRRDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDE 409 Query: 397 WKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + + G D Y A F+ P D V+ +QR IGK+ LAL + GG MA Sbjct: 410 GMLVEYEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAY 469 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHL----WMQDQYPEFAVKDKLIGTACELVKKAWR 511 GL+L S++++ W ESH W +Y D+ Sbjct: 470 GLEL---SEDLRRKIV---WSYRESHPALSTWWASLEYAALIALDQ-------------- 509 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSI--SARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 G A VV G + SA V + L M LPS R + Sbjct: 510 --------------PGRAVVVPIGRGLCTSATFVRDTTALRME---------LPSGRAIS 546 Query: 570 YSDVK-----GDCSYL------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 Y + + G + + N L R+ L+ N+ Q ++RD+ E M + Sbjct: 547 YHNARLVLEPGASAPIAVYDKPNGVVETLDRK-----ILSNNMTQGLARDLFWEAMLSVA 601 Query: 619 KNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV V+DE++ E P+ + L + ++K P WA GLPL AEG+ + +RK Sbjct: 602 PV-EQIVHHVYDEVILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658 >gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c] gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c] Length = 252 Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 134/265 (50%), Gaps = 27/265 (10%) Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-------VKSTSTFEDWE 476 ++KEQR IGKV ELALGY GG F A+ +DL+ + ++ + +W Sbjct: 1 MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQAVFPPLLLQEATELLEWT 60 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 +A + P F + D+ AC++ K+AWR H + W+ L + Sbjct: 61 KA--------NHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPE 111 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNTA--TSQLMRE 590 + + ++ + + + LPS R L Y+ D G SY+ T T + R Sbjct: 112 TTH-----TCCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRL 166 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D P F+ L +L Sbjct: 167 TTYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAAL 226 Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675 M P WA+GLPL AEG++ RYRK Sbjct: 227 MATPPPWAEGLPLAAEGFDTYRYRK 251 >gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T] Length = 714 Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 122/476 (25%), Positives = 207/476 (43%), Gaps = 93/476 (19%) Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR----WI------CTSVLARTN 103 P+DL++++ + + A N FE ++ L +KR W+ C AR Sbjct: 107 PTDLIEHIANGGPI-AAWNITFEFWIWNMVL-----AKREGWPWLQLEQCYCDMAKARRF 160 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE-- 161 LP SL A AL S K ++GK LI + C+ P T+A + W L+ Sbjct: 161 SLPGSLDAAAQALKTSP---KDKKGKQLINKLCR------PVSATKARPLPRWTLYTAPQ 211 Query: 162 -------YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 YC +DV++ + ++ ER+ WL DQ IN RG ++D++ + +++ Sbjct: 212 DYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESLDNALDIVD 271 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 Q ++ ++ +T+G + S + + +L + G + +++ ++ L ++ A Sbjct: 272 QTTRRFTMELAAITNGAVGSVSEVAKMTDFLAGL-GCRMHNLTADSVSEALERDDLNPTA 330 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + ++ R A +G+ + KL +L +SSDGRLR F+GA TGRWS Q QNL + Sbjct: 331 RRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNLTSKG 389 Query: 335 RSEEILTQTIQALNRGETI----------------------------------------- 353 + + + + TI Sbjct: 390 PKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALKDLTHRNLD 449 Query: 354 ------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 DP+ L S C+R IA+ GKK V D + IEA VLA +A +W+++ F Sbjct: 450 LIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRLEVFRTHGK 509 Query: 408 IYVTTYAKAFNTPIDKV--SKEQ--------RAIGKVMELALGYQGGAKVFKTMAS 453 IY + +K P +++ KEQ +++GKV ELA GY G +K + Sbjct: 510 IYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWKAFGA 565 >gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] Length = 596 Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 112/389 (28%), Positives = 156/389 (40%), Gaps = 91/389 (23%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L T+ DG L L+++GA TGRW+G Q NR Sbjct: 294 LETMQSRCRRDGSLPFGLKYFGAIATGRWAGDA----------------GLNFQNFNREA 337 Query: 352 TIA-DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 DP R C++A G KL++ADL+ IE RVLAWIAG+ NG IY Sbjct: 338 YYGVDP--------RKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQ 389 Query: 411 TTYAKAFNTPIDKVSKEQRA---IGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + N + KE + K + LGY G K F+++A GL++ Sbjct: 390 AHAETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGLEMS------- 442 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 IG A V +R + ++ LW+ + + Sbjct: 443 -------------------------------IGEAKRTVDD-FRKANPRIVSLWQAVEDS 470 Query: 528 FACVVQEGGSISARRVANVPRLVMRRH-KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 MR H + LPS R + Y DV+ + T Sbjct: 471 -----------------------MRYHIGSTFFMYLPSLRSIRYFDVQEEEGLTATTERG 507 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R YGGKLTEN+VQA +RD+ EG+ K G I+ TVHDE++ E P+ +V T Sbjct: 508 GRRLHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVET 567 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + L+ + P W GLP+ AEG E Y K Sbjct: 568 VTDLLAQTPDWIPGLPVAAEGIETSCYTK 596 >gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e] gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e] Length = 306 Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/286 (33%), Positives = 129/286 (45%), Gaps = 47/286 (16%) Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------- 485 EL LGY+GG F T A + GLDL + ++ + T W + W Sbjct: 22 ELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPH 81 Query: 486 ---QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-----S 537 +D P + + DK + C+ +K+ WR H + W+DL +G V+ G Sbjct: 82 PGEKDDRPSY-ILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAG 140 Query: 538 ISARRVANVPRLVMRRHKRD----------VHIVLPSSRRLVYSDV-------KGDCSYL 580 RR + R + D + + LPS R L Y + + + Sbjct: 141 AHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRI 200 Query: 581 NT-------ATSQLMRE----RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 NT +QL R+ T+GGK ENIVQA+ RD+L M N GY IVL+VH Sbjct: 201 NTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVH 260 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V ETPDT ++V L LM P WA G PL AEG E KRY K Sbjct: 261 DELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306 >gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1] gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1] Length = 655 Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 183/709 (25%), Positives = 297/709 (41%), Gaps = 97/709 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMPSDLLQY 60 LF+D ET S L + G+ Y + + + LW+ + +P ++ + Sbjct: 6 LFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEVGQ--PVPKQIIGH 63 Query: 61 LRDETVMCVAHNSLFE----RILFKKTLGI-DIPS---KRWICTSVLARTNGLPSSLKNA 112 L VAHN+ F+ + ++ G D+P + C++ AR NGLP SL A Sbjct: 64 LNGSPF--VAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 121 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 C AL + K EG A++ K +P D T A+H + + +Y D +A Sbjct: 122 CEALGLP--VQKDTEG----AKWMKEIAANP--DWTPADHPEHFTRTYKYALIDTDAMVG 173 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG I Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + ++ Y + G D+ D TLK I + N+ + LI RL +S + Sbjct: 234 LAVTEVAKIKEYAATL-GEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 292 Query: 293 NTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQAL 347 L V GRL+ ++GA T R +G Q N PR + + A Sbjct: 293 AILRAHVG--GRLQHHTIYHGALSGRSTARGAGGA-QTLNTARPRPGKKTADCEAILDAC 349 Query: 348 NRGE-------TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKI 399 RG+ + L +D R A+ G LV ADL+GIEAR+ W+A + K+ Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKL 409 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G D Y ++ D V+K+QR +GKV +LALG+ GG F +MA++ G+ L Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVHL 469 Query: 460 --QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 +Q S+ V FE W W +Y D+ Sbjct: 470 PPEQVSEIVYNWRAGRPAFERW--------WSLCEYSVLMALDQ--------------PG 507 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + V+ + +D V R R + + LPS R + Y + Sbjct: 508 REVVMPVGRDFCSQITFV---------------------RDARALRMHLPSGRAISYHNA 546 Query: 574 KGDCSY-LNTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + N + + Y L+ N Q ++RD+ + + + +IV Sbjct: 547 RLHLEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHH 605 Query: 628 VHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+DE + E + L M + +W GLPL AEG+ R+RK Sbjct: 606 VYDEALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 223 Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 84/206 (40%), Positives = 113/206 (54%), Gaps = 5/206 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ EPVK+WD T+ MP DL YL D Sbjct: 10 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68 Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K L ID+P R T V A +GLP +L + C N + Sbjct: 69 PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI--P 179 TK +EGKALI FCK +S T H + W F Y D+ A RE+++ L Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDL 205 ++ E LW LDQ IN RG +D++L Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVEL 214 >gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46] Length = 330 Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 106/336 (31%), Positives = 158/336 (47%), Gaps = 32/336 (9%) Query: 6 IDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SDLLQY- 60 IDIE S + K G + Y AE I + AY+ D PV D T+ P +D + Sbjct: 3 IDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYETFK 62 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 63 IALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVLRL 122 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K + GK LI F S P T+ N + WQ F +YC RDVE Sbjct: 123 QNQ--KDKAGKNLIRYF------SMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVE 174 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q + +L + + Sbjct: 175 VEMAIANKIKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQ 234 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +TD + + L +L G+D+ ++ + T++ L + T AK ++ RL S Sbjct: 235 ITD--LENPNSPTQLLTWLNKEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSK 290 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +++ K N + + + SD R+RG QFYGA TGRW+G Sbjct: 291 TSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAG 325 >gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781] gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781] Length = 655 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 181/709 (25%), Positives = 295/709 (41%), Gaps = 97/709 (13%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMPSDLLQY 60 LF+D E S L + G+ Y + + + LW+ + +P ++ + Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEVGQ--PVPKQIVGH 63 Query: 61 LRDETVMCVAHNSLFE----RILFKKTLGI-DIPS---KRWICTSVLARTNGLPSSLKNA 112 L VAHN+ F+ ++ ++ G D+P + C++ AR NGLP SL A Sbjct: 64 LNGSPF--VAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGA 121 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 C AL + K EG A++ K +P D T A+H + + +Y D +A Sbjct: 122 CEALGLP--VQKDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVG 173 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ +PL + + +D IN RG D++ +++L A +LD ++ LTDG I Sbjct: 174 VWENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + ++ Y + G D+ D TLK I + N+ + LI RL +S + Sbjct: 234 LAVTEVAKIKEYAATL-GEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 292 Query: 293 NTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQAL 347 L V GRL+ ++GA T R +G Q N PR + + A Sbjct: 293 AILRAHVG--GRLQHHTIYHGALSGRSTARGAGGA-QTLNTARPRPGKKTADCEAILDAC 349 Query: 348 NRGE-------TIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKI 399 RG+ + L +D R A+ G LV ADL+GIEARV W+A + K+ Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKL 409 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G D Y ++ D V+K+QR +GK +LALG+ GG F +MA++ G+ L Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHL 469 Query: 460 --QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 +Q S+ V FE W W +Y D+ Sbjct: 470 PPEQVSEIVYNWRAGRPAFERW--------WSLCEYSVLMALDQ---------------- 505 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 G V+ G + N ++ + R + + LPS R + Y + Sbjct: 506 ------------PGREIVMPVGRN-------NCSQITFVKDARALRMHLPSGRAISYHNA 546 Query: 574 KGDCSY-LNTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + N + + Y L+ N Q ++RD+ + + + +IV Sbjct: 547 RLHLEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHH 605 Query: 628 VHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+DE + E + L M + +W GLPL AEG+ R+RK Sbjct: 606 VYDEALLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7] gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11] Length = 237 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 15/236 (6%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYL-----RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N L F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA---NHVQAWQLFGEYCKRDVEA 169 C LN + K + GKALI RF K + + Y R H + W F Y K D+ + Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKN--YKIRRYTADTHPKEWAEFIAYAKSDITS 178 Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 RE++K++ + E + + LDQ INDRG+++D+ L E + + +++L E+ Sbjct: 179 MREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEE 234 >gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13] Length = 237 Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 15/236 (6%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYL-----RDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N L F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA---NHVQAWQLFGEYCKRDVEA 169 C LN + K + GKALI RF K + + Y R H + W F Y K D+ + Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKN--YKIRRYTADTHPKEWAEFIAYAKSDITS 178 Query: 170 TRELFKRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 RE++K++ + E + + LDQ INDRG+++D+ L E + + +++L E+ Sbjct: 179 MREVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEE 234 >gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638] gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638] gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68] Length = 231 Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 115/233 (49%), Gaps = 11/233 (4%) Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 F T A LDL + + + +A+S + + + + +++ AC+ +K Sbjct: 4 FITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVF-IACDSLK 62 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + WR H W +L + + ++ L +RR + I LPS R Sbjct: 63 RLWRRAHPATCDFWYELERTVRTAIA-----TPQKTLYCGYLKIRRDGAWLRIQLPSGRA 117 Query: 568 LVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGY 622 + Y KG+ +Y+ N+ + + R +TYGGKL EN+ QA +RD+L M GY Sbjct: 118 VCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGY 177 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IVLTVHDEI+SE PD+P +S + L+ P WA +PL A G+E+ RYRK Sbjct: 178 SIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230 >gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7] gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11] Length = 267 Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 85/266 (31%), Positives = 116/266 (43%), Gaps = 47/266 (17%) Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------QDQYPEFAVKDKLIGTA 502 GLDL + ++ + T W + W +D P + + DK + Sbjct: 3 GLDLIEXAKTMAGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSY-ILDKKVWRT 61 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS---ISARRVANVPRLVMRRHKRDVH 559 C+ +K+ WR H + W+DL +G V+ G A +N R + ++ Sbjct: 62 CDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTTEID 121 Query: 560 ------------IVLPSSRRLVY------------------SDVKGDCSYLNTATSQLMR 589 + LPS R L Y ++V+ N T Q Sbjct: 122 SSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQWTT 181 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 T+GGK ENIVQA RD+L M NA GY IVL+VHDE+V ETPDTP ++V L Sbjct: 182 LYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAELEK 241 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 LM P WA+G PL AEG E KRY K Sbjct: 242 LMCALPEWAEGFPLVAEGAELKRYAK 267 >gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 199 Score = 119 bits (297), Expect = 2e-24, Method: Composition-based stats. Identities = 79/196 (40%), Positives = 106/196 (54%), Gaps = 14/196 (7%) Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 +Q P F + D+ AC++ K+AWR H + W+ L C V + +I A+ Sbjct: 10 NQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 62 Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTE 599 + ++ R + + LPS R L Y+ D G SY+ T T + R TYGGKL E Sbjct: 63 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVE 122 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659 NI QA+SRD+L M GY IVLTVHDEI++E D F+ L +LM P WA+ Sbjct: 123 NITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 182 Query: 660 GLPLKAEGYEAKRYRK 675 GLPL AEG+E RYRK Sbjct: 183 GLPLAAEGFETHRYRK 198 >gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 181 Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 3/176 (1%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AY+++ PVK+WD T+ MP+DL YL D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63 Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K L ID+P R T V A +GLP +L + C N + Sbjct: 64 PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K +EGKALI FCK +S T H + W F Y D+ A RE+++ L Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHL 179 >gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] Length = 290 Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 77/196 (39%), Positives = 105/196 (53%), Gaps = 14/196 (7%) Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + P F + D+ AC++ K+AWR H + W+ L C V + +I A+ Sbjct: 101 NHRPTFGLSDRAW-LACDVFKRAWRNAHPAIAAFWQALQ----CAVTD--AIGHPETAHT 153 Query: 547 PRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTE 599 + ++ R + + LPS R L Y+ D G SY+ T T + R TYGGKL E Sbjct: 154 CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVE 213 Query: 600 NIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAK 659 NI QA+SRD+L M GY IVLTVHDEI++E D F+ L +LM P WA+ Sbjct: 214 NITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQ 273 Query: 660 GLPLKAEGYEAKRYRK 675 GLPL AEG++ RYRK Sbjct: 274 GLPLAAEGFQTHRYRK 289 >gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 240 Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 123/286 (43%), Gaps = 59/286 (20%) Query: 402 FANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLD 458 F NGED+Y T + F P++K V+ E R GK+ LA GY G K M + GL Sbjct: 1 FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMGALKMGLS 60 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 KD+L + + AWRA + ++ Sbjct: 61 ------------------------------------KDEL-----QPIVDAWRAANPNIV 79 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 QLW D+ + G ++ R L + + I LPS RRL Y G Sbjct: 80 QLWHDVDNAATRAISTGSPVTLRN------LGFEKKSGMLFINLPSGRRLAYVKPGIGMN 133 Query: 578 SYLNTATS--------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + T+ + + + TYGGKL ENIVQA +RD+L E + G IV+ +H Sbjct: 134 RFGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIH 193 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V + P +V +C+L+ + P GLP+ A GYE Y+K Sbjct: 194 DEVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239 >gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 205 Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats. Identities = 79/207 (38%), Positives = 108/207 (52%), Gaps = 14/207 (6%) Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 E E+ + P F + D+ AC++ K+AWR H + W+ L C V + Sbjct: 5 EAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQ----CAVTD- 58 Query: 536 GSISARRVANVPRLVMRRHKRD-VHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLM 588 +I A+ + ++ R + + LPS R L Y+ D G SY+ T T + Sbjct: 59 -AIGHPETAHTCCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWT 117 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 R TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F+ L Sbjct: 118 RITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLA 177 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +LM P WA+GLPL AEG++ RYRK Sbjct: 178 ALMATPPPWAQGLPLAAEGFQTHRYRK 204 >gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 85/271 (31%), Positives = 117/271 (43%), Gaps = 60/271 (22%) Query: 417 FNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFE 473 F PI++++K R GK+ ELALGY G +M + GL Sbjct: 2 FGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMGALAMGLS--------------- 46 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 +D+ P L+ T WR + + Q W D+ E V+ Sbjct: 47 ------------EDELP------GLVST--------WRNANPHITQFWWDVDEAAVRAVR 80 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATS------- 585 E R+ V + + + +LPS R+L Y + G Y + Sbjct: 81 E------RKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134 Query: 586 -QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYG KL ENIVQ SRDIL E M K G+ IV VHDE V E P+ SV Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEGKS-SV 193 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +C +M + PSW GLPL+A+GYE + Y+K Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224 >gi|28198296|ref|NP_778610.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182680933|ref|YP_001829093.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28056366|gb|AAO28259.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631043|gb|ACB91819.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] Length = 154 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 61/120 (50%), Positives = 72/120 (60%), Gaps = 6/120 (5%) Query: 562 LPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 34 LPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMP 93 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E RYRK Sbjct: 94 AIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 153 >gi|307579401|gb|ADN63370.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 132 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 61/120 (50%), Positives = 72/120 (60%), Gaps = 6/120 (5%) Query: 562 LPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 12 LPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLAACMP 71 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E RYRK Sbjct: 72 AIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETHRYRK 131 >gi|71897667|ref|ZP_00679912.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71732570|gb|EAO34623.1| phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 169 Score = 101 bits (251), Expect = 4e-19, Method: Composition-based stats. Identities = 60/120 (50%), Positives = 72/120 (60%), Gaps = 6/120 (5%) Query: 562 LPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 LPS R L Y+ D G SY+ T T + R TYGGKL ENI QA+SRD+L M Sbjct: 49 LPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMP 108 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 109 AIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 168 >gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] Length = 239 Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 87/288 (30%), Positives = 121/288 (42%), Gaps = 61/288 (21%) Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +K F DIY + + F+ P++K V+ R GK+ ELALGY G + + Sbjct: 1 MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIGA--- 57 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 LD T ED Q + +WRA + Sbjct: 58 LD----------TGLSEDELQP---------------------------LVDSWRASNPN 80 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-- 574 ++Q W D+ CV +I R + + IVLPS RRL Y K Sbjct: 81 IVQFWWDVDR---CVKT---AIKQRTATETHGIRFVYQNGILFIVLPSGRRLCYVKPKIG 134 Query: 575 ------GDCSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 +Y T++ R +YG K ENIVQAISRDILC M+ T + IV Sbjct: 135 ENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMR--TLSHCFIVGH 192 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ ETP + +C + + P W GL L+A+GYE Y+K Sbjct: 193 VHDELIIETPMDADLT--AICEQIGRTPKWIYGLLLRADGYETAFYKK 238 >gi|71276173|ref|ZP_00652453.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon] gi|71163091|gb|EAO12813.1| truncated phage-related DNA polymerase [Xylella fastidiosa Dixon] Length = 160 Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 60/133 (45%), Positives = 78/133 (58%), Gaps = 6/133 (4%) Query: 549 LVMRRHKRDVHIVLPSSRRLVYS----DVKGDCSYLNT--ATSQLMRERTYGGKLTENIV 602 + M+ + + + LPS R L Y+ D G SY+ T T + R TYGGKL ENI Sbjct: 27 ITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENIT 86 Query: 603 QAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662 QA+SRD+L M GY IVLTVHDE+++E D F+ L +LM P WA+GLP Sbjct: 87 QAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLP 146 Query: 663 LKAEGYEAKRYRK 675 L AEG++ RYRK Sbjct: 147 LAAEGFQTHRYRK 159 >gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46] Length = 225 Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 80/274 (29%), Positives = 116/274 (42%), Gaps = 66/274 (24%) Query: 417 FNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFE 473 FN P++ ++K R GKV ELALGYQGGA K M + G++ + V S Sbjct: 2 FNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMGALEMGIEENELQGLVDS----- 56 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 WR + ++ WK AC Sbjct: 57 ------------------------------------WRNANPNIVNFWK------ACQEA 74 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSY-----------LN 581 ++ +R+ + L K + I LPS R L Y G+ S+ LN Sbjct: 75 AINTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 S+L +TYGGKL ENIVQA +RD+L + +G+ IV VHDE++ E P Sbjct: 135 RKWSKL---KTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSN 191 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + ++M K WAKGL L ++G+ + Y K Sbjct: 192 -GLKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224 >gi|227540973|ref|ZP_03971022.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227183233|gb|EEI64205.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 100 Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 44/89 (49%), Positives = 56/89 (62%) Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 ++R +YGGKL ENIVQA++RD+ M + G+ IV+ VHDEIV + P F+V Sbjct: 11 VVRLESYGGKLVENIVQAVARDLFVHAMTLVAQTGHKIVMHVHDEIVIDEPVGSGFTVAD 70 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 C LM P WA GLPL A+GYE YRK Sbjct: 71 ACVLMATLPDWAAGLPLDADGYECDYYRK 99 >gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] Length = 222 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 81/271 (29%), Positives = 111/271 (40%), Gaps = 63/271 (23%) Query: 417 FNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFE 473 FN ++K V+ R GK+ ELALGY G K+M + G++ ++ V Sbjct: 2 FNVAVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMGALEMGIEEEELQPLVT------ 55 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 AWR + + +LW D+ V+ Sbjct: 56 -----------------------------------AWRQSNSNITKLWWDVDRAVKVCVK 80 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY------SDVKGDCSYLNTA---T 584 + + + + M + IVLPS RRL Y +V G S T Sbjct: 81 QKTPTETHGIKFIYQSGM------LFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGT 134 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +YG K ENIV AISRDIL M+ T IV VHDEI+ E FS Sbjct: 135 KKWERIESYGPKFVENIVHAISRDILYHAMQ--TLKNCSIVAHVHDEIIIEADMRMSFS- 191 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +C M + PSWA GL L A+GYE + Y+K Sbjct: 192 -AICEQMARTPSWANGLLLSADGYECQFYQK 221 >gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 284 Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 82/287 (28%), Positives = 127/287 (44%), Gaps = 29/287 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP--SD 56 M + IDIET S + K G + Y AE I + AY+ D + D T+ P +D Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 57 LLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYC 163 L K + GK LI F S P T+ N ++ WQ F +YC Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYF------SIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYC 172 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 RDVE + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L Sbjct: 173 IRDVEVEMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELL 232 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + +T + + L +L G+D+ ++ + T++ L + Sbjct: 233 KQAKHITG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA 277 >gi|75906055|gb|ABA29401.1| DNA polymerase [Bacteriophage APSE-2] Length = 324 Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 44/77 (57%), Positives = 51/77 (66%) Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ENI QA +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N WA Sbjct: 247 ENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDWA 306 Query: 659 KGLPLKAEGYEAKRYRK 675 LPL A G+E RYRK Sbjct: 307 WDLPLSANGFETYRYRK 323 >gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] Length = 341 Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 76/261 (29%), Positives = 119/261 (45%), Gaps = 40/261 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ++ ID+ET S + K GV+ YAE I L A + D V ++D +P ++L Sbjct: 4 IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63 Query: 59 QYLRDETVMCVAHNSLFERILF------------------KKTLGIDIPSKRWICTSVLA 100 + + V+ A N+ FERI + T+G + W CT + + Sbjct: 64 DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN--------- 151 GLP SL+ L + KM+EGK LI FC P T++N Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQ--KMKEGKDLIRYFCV------PCKPTKSNGGRTRNFPM 175 Query: 152 HV-QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 H + W +F Y KRDVE + ++L P+ D + +LLDQ INDRG +DL +V Sbjct: 176 HAPEKWTVFKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVEN 235 Query: 209 LQELIAQERKKLDEDIVKLTD 229 + + + ++++ LTD Sbjct: 236 AIAFDERSKATITDEMLGLTD 256 >gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] Length = 880 Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 123/254 (48%), Gaps = 43/254 (16%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVD 255 G+ D ++L L+E I ++ +KL +I +L ++ I S++Q L LF + ++ Sbjct: 498 GFVTDRKVLLDLKEDINKDLEKLTSEIYELAGSEFNINSTKQ---LGEVLFKDLDLPVIK 554 Query: 256 MSE---GTLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 ++ T S+L H I ++ K L +L S+ + L +A+ DGR+R Sbjct: 555 KTKTGFSTDASVLEKLRDKHQIIPKIEKYRELFKLQST-----YIEGLEKAIDDDGRIRS 609 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + + TGR S QNLP + + G +R Sbjct: 610 TFR-QNIAATGRLSSQDPNLQNLPIK-------------TDEGR-----------LIRKA 644 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 A GK L+ AD + IE R+LA ++G++ I+AF NGEDI+ T +K F+TP+D+V+K Sbjct: 645 FKAGQGKILIDADYSQIELRILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKR 704 Query: 428 QRAIGKVMELALGY 441 QR+ K + + Y Sbjct: 705 QRSDAKAVNFGIIY 718 >gi|313621758|gb|EFR92494.1| DNA polymerase [Listeria innocua FSL J1-023] Length = 155 Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 8/146 (5%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYLNTATSQLMR 589 +IS R L + I LPS R L Y K Y + Sbjct: 10 AISTRESQKYKGLTFYYKAGILFIKLPSGRNLAYFRAKLVPGKYGHQICYEGVTDKGWRK 69 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 + TYGGKL ENIVQAI+RD L ++ G V+ VHDE ++E P++ SV L + Sbjct: 70 QYTYGGKLVENIVQAIARDCLAVSLRRIEDAGISTVMHVHDEAITEVPESE-SSVDKLNA 128 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + SWA GLPL+ +G+ + Y K Sbjct: 129 ILAEPISWAPGLPLQGDGFSSDFYMK 154 >gi|227544274|ref|ZP_03974323.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185748|gb|EEI65819.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 93 Score = 78.6 bits (192), Expect = 3e-12, Method: Composition-based stats. Identities = 41/87 (47%), Positives = 52/87 (59%), Gaps = 2/87 (2%) Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 R TYG KL ENIVQA SRD+L E M+ G +V+ +HDE V + P S+ T+ Sbjct: 8 RIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAPFNR--SLDTMV 65 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675 LMTK P WA GL L A G+ + Y+K Sbjct: 66 QLMTKVPDWANGLILNAAGFVSDFYKK 92 >gi|332142369|ref|YP_004428107.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep ecotype'] gi|327552391|gb|AEA99109.1| phage-related DNA polymerase [Alteromonas macleodii str. 'Deep ecotype'] Length = 310 Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 134/345 (38%), Gaps = 80/345 (23%) Query: 283 ASSGSAILKLNTLSEAVS----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 A S A+ + L +AV+ +D +L L +YGA TGR+ G +E Sbjct: 18 AKSNQAVSRAKKLVQAVNGRPNNDNKLVVPLVYYGA-HTGRYGG-------------NEG 63 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + +Q L RG R + A G+ + VAD + IEAR++AW A E Sbjct: 64 L---NLQNLQRGSE-----------HRKALTAPFGQLVYVADSSNIEARIVAWFAQETAL 109 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + F NG D Y T + P+ K + + +R +GKV L L Y GA+ F Sbjct: 110 LNQFKNGIDTYATLATDIYGFPVTKQTHQLERNVGKVARLGLQYGMGARTFH-------- 161 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 T E W +PE K ++KK W +Q + Sbjct: 162 ------------RTMESGPMGIPPMPWA---FPEIEKIVKTYRRTHPMIKKCWEIGNQII 206 Query: 518 --------LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 L+ W+ LT C+ G P L +++ +V Sbjct: 207 QKMIRKDTLETWRCLTVRHQCLELPNGM-----YLQFPNL----RNKEIQTAQGPQYEVV 257 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 Y SY + + +L+ +R YGGKL ENI QA++ + E M Sbjct: 258 YD------SY-DYKSKKLVEKRLYGGKLLENIAQALAGLAMKEMM 295 >gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] Length = 949 Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 5/112 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ GKK++ AD + IE R++A I+ E+ I AF NGEDI+V+T A+ F+ P+++ Sbjct: 710 IRGAFVAAEGKKIISADYSQIELRLIAEISNEENMILAFQNGEDIHVSTAARLFDIPLEE 769 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 V+K QR K + + Y GA +A GL + Q ++ S FE++ Sbjct: 770 VTKTQRGQAKTVNFGIIYGQGA---FALAEQTGLSRTEAKQMIE--SYFENY 816 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 86/179 (48%), Gaps = 33/179 (18%) Query: 270 ITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 ++ LA D +I N L G A LK ++ L E V DGR+ T + TGR S Sbjct: 642 LSYLAADHTIIQNVLDYRGLAKLKSTYVDALPEQVEEDGRVH-TDYMQTVAATGRLSSNN 700 Query: 325 FQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382 QN+P R ER + VR + N L+ AD + Sbjct: 701 PNLQNIPIRTERGRQ-------------------------VRKAFVPKNEDYVLLAADYS 735 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ ED I+AF NGEDI+ +T AK FN PI++V++EQR+ K + + Y Sbjct: 736 QIELRIIAALSEEDTMIEAFKNGEDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIY 794 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R ++ GKK++ AD + IE R++A I+GE+ IKAF +GEDI+ +T AK F P+ + Sbjct: 705 IRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQDGEDIHASTAAKLFKIPLAE 764 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 VSK QR+ K + + Y GA +A GL + Q +++ Sbjct: 765 VSKTQRSQAKTVNFGIIYGQGA---FALAEQTGLSRTEAKQMIEA 806 >gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 180 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 79/177 (44%), Gaps = 19/177 (10%) Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 +WR + + W D+ + + R + + M + I LPS R Sbjct: 13 NSWRNSNPMITAFWWDIDRAVKTTITQRIQTEVRGICFFYKSGM------LFIKLPSGRL 66 Query: 568 LVYSDVK-GDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 L Y + G+ Y + T + R +YG K ENIVQA+SRDILC MK T Sbjct: 67 LSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVSRDILCYAMK--T 124 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E +P +C M ++P W + L+A+GYE Y+K Sbjct: 125 LRHCFIVGHVHDELIIEC--SPDVDTNVICKQMGRSPDWMPDILLRADGYETNFYKK 179 >gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] Length = 1060 Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 25/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L+E + DGR+ T Q A+ TGR S QN+P Sbjct: 768 VDGLAEHIGPDGRVHTTFQQTVAA-TGRLSSTQPNLQNIP-------------------- 806 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I D G +R +A G +LV AD + IE RVLA +G++ ++AFA G+D++ Sbjct: 807 -IRDEPG---RSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEGLLEAFARGQDVHAR 862 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F P+++V+ EQR + K + L Y Sbjct: 863 TASEIFGVPLEQVTPEQRRVAKAVNFGLAY 892 >gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] Length = 889 Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 72/151 (47%), Gaps = 27/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 ++ L + ++ DGR+ + Q + TGR S QN+P R E E+ Sbjct: 602 VDGLGKVIAPDGRIHTSFQ-NTVTATGRLSSTEPNLQNIPVRTELGAEL----------- 649 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R +A GK LV AD + IE R+LA IAG++ I+AF GEDI+ Sbjct: 650 --------------RKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGEDIHT 695 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ F P+D+V+K R+ K + + Y Sbjct: 696 VTAAQVFGVPVDQVTKHMRSSAKAVNFGIVY 726 >gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868] gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868] gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM] gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Riemerella anatipestifer RA-GD] Length = 935 Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 77/157 (49%), Gaps = 30/157 (19%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ + A+ TGR + QN+P R ER ++ Sbjct: 659 DGRVHTSFAQTVAA-TGRLASNNPNLQNIPIRTERGQQ---------------------- 695 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 VR +A G K+V AD + IE R++A I+GE+ IKAF G+DI+ +T +K F+ P Sbjct: 696 ---VRGAFVAPKGSKIVSADYSQIELRLIAEISGEETMIKAFKEGQDIHASTASKLFDVP 752 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +++VSK QR+ K + + Y G F +A GL Sbjct: 753 LNEVSKTQRSQAKTVNFGIIY--GQSAF-ALADQTGL 786 >gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 169 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 20/174 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L Y+ D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----------WQLFGEY 162 K+ GK L+ FC P T+AN + WQ F +Y Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQY 166 >gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] Length = 1072 Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 25/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L+E + DGR+ T Q A+ TGR S QN+P Sbjct: 780 VDGLAEHIGPDGRIHTTFQQTVAA-TGRLSSTQPNLQNIP-------------------- 818 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I D G +R +A G +LV AD + IE RVLA +G+ ++AFA G+D++ Sbjct: 819 -IRDEPG---RSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGLVEAFAQGQDVHAR 874 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F P+++V+ EQR + K + L Y Sbjct: 875 TASEIFGVPLEQVTPEQRRVAKAVNFGLAY 904 >gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] Length = 582 Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 3/97 (3%) Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 D R C +A G LV+AD + IE R+LA ++G+ ++AF GED++ T A F P Sbjct: 342 DEFRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFVEAFRRGEDLHRVTAATMFGVPK 401 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++V+KEQR+ K + L Y G +++A+ G D Sbjct: 402 EEVTKEQRSAAKRINFGLAYGRGP---RSLAAQLGTD 435 >gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 778 Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/150 (34%), Positives = 73/150 (48%), Gaps = 25/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L +L E + DGR+R T + + TGR S QNLP R+EE G Sbjct: 492 LESLEECIDGDGRIRSTFK-QNVTATGRLSSTEPNLQNLPI--RTEE-----------GR 537 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I R A N K L+ AD + IE RVLA +A + +AF++ DI+ Sbjct: 538 KI-----------RKAFKADNEKILIDADYSQIELRVLAHLANDKKMQEAFSHDIDIHTK 586 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FNTPID+V+K QR+ K + + Y Sbjct: 587 TASEVFNTPIDEVTKLQRSEAKAVNFGIIY 616 >gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] Length = 919 Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 25/155 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L V GR+ T A+ TGR S QN+P Sbjct: 629 LDPLPRLVDPQGRIHTTFN-QKATATGRLSSSNPNLQNIP-------------------- 667 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + PLG +RSC IA G+ LV AD + +E RVLA ++ + ++AF NGEDI+ Sbjct: 668 -VRGPLG---KRMRSCFIAGPGRLLVSADYSQVELRVLAHVSQDPALLEAFRNGEDIHAR 723 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 T A ++ P D+VS +QR K + L Y GA+ Sbjct: 724 TAALVYDLPPDQVSPDQRRNAKTINFGLIYGMGAQ 758 >gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] Length = 949 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 37/234 (15%) Query: 220 LDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQL 273 L+ DI +LT I + + + + ++ L + LVD + T S + ++ L Sbjct: 579 LNADIERLTSEIYEEAGEEFKISSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYL 638 Query: 274 AKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 AKD +I L G + LK ++ L E V+ DGR+ T + TGR S Q Sbjct: 639 AKDHDIIQKVLDYRGLSKLKSTYVDALPEQVAQDGRVH-TDYMQTVAATGRLSSNNPNLQ 697 Query: 329 NLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 N+P R ER ++ ++ + L+ AD + IE R Sbjct: 698 NIPIRTERGRQVR------------------------KAFVPRDENHTLLAADYSQIELR 733 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++A ++ E+ I+AF +GEDI+ +T AK FN P+++V++EQR+ K + + Y Sbjct: 734 IIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIY 787 >gi|227544665|ref|ZP_03974714.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185353|gb|EEI65424.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 93 Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 38/87 (43%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 R TYG KL ENIVQA SRD+L M+ G +V+ +HDE V + P S+ T+ Sbjct: 8 RIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTDR--SLDTIV 65 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +MT+ P WA GL L A G+ Y+K Sbjct: 66 KIMTEVPDWADGLILNAAGFVGGFYKK 92 >gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 37/234 (15%) Query: 220 LDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQL 273 L+ DI +LT I + + + + ++ L + LVD + T S + ++ L Sbjct: 579 LNADIERLTSEIFAEAGEEFNIGSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYL 638 Query: 274 AKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 AKD +I L G + LK ++ L E V+ DGR+ T + TGR S Q Sbjct: 639 AKDHDIIQKVLDYRGLSKLKSTYVDALPEQVAQDGRVH-TDYMQTVAATGRLSSNNPNLQ 697 Query: 329 NLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 N+P R ER ++ ++ + L+ AD + IE R Sbjct: 698 NIPIRTERGRQVR------------------------KAFVPRDENHTLLAADYSQIELR 733 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++A ++ E+ I+AF +GEDI+ +T AK FN P+++V++EQR+ K + + Y Sbjct: 734 IIAALSEEENMIQAFTDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIY 787 >gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] Length = 893 Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 73/150 (48%), Gaps = 25/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L +L E + DGR+R T + + TGR S QNLP R+EE G Sbjct: 607 LESLEECIDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLPI--RTEE-----------GR 652 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I R A +GK L+ AD + IE RVLA +A + +AF+ DI+ Sbjct: 653 KI-----------RKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIHTK 701 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+TPID+V+K QR+ K + + Y Sbjct: 702 TASEVFSTPIDEVTKLQRSEAKAVNFGIIY 731 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 79/286 (27%), Positives = 128/286 (44%), Gaps = 53/286 (18%) Query: 170 TRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 T ELF + IPL D+ L G +D+D + L E +L+ DI L Sbjct: 538 TEELFNDIEIPLLSVLADMEL-------EGINLDVDFLNSLSE-------ELNTDIKNLE 583 Query: 229 DGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQLAKD--LILN 280 I ++ + + + ++ L + LVD + T S + ++ LA+D +I N Sbjct: 584 TSIYEAAGEEFNIASPKQLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIKN 643 Query: 281 RLASSGSAILK---LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQER 335 L G A LK ++ L + V S GR+ T + TGR S QN+P R ER Sbjct: 644 ILEYRGLAKLKSTYIDALPDQVEESTGRVH-TDYMQTVAATGRLSSNNPNLQNIPIRTER 702 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 ++ ++ + L+ AD + IE R++A ++ E Sbjct: 703 GRQVR------------------------KAFVPRDENYTLLAADYSQIELRIIAALSDE 738 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+AF NGEDI+ +T +K FN P+D+V++EQR+ K + + Y Sbjct: 739 TTMIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIY 784 >gi|284009397|emb|CBA76584.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 92 Score = 70.5 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 2/87 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ VK+WD TE MP+DL Y Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHGSVKVWDVTEDKTMPTDLKSYFDA 63 Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIP 89 ++ V HN +F+ ++ K L ID+P Sbjct: 64 PEILTVWHNGGMFDTVILKHVLNIDLP 90 >gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 878 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 72/147 (48%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +A+ DGR+R T + + TGR S QNLP + + G Sbjct: 595 LEKAIDYDGRIRSTFR-QNIAATGRLSSQDPNLQNLPIK-------------TDEGR--- 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R A GK L+ AD + IE R+LA ++G++ I AF N +DI+ T + Sbjct: 638 --------LIRKAFKAEEGKILIDADYSQIELRILASLSGDEHMIDAFINVDDIHRKTAS 689 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F+TP+++V+K QR+ K + + Y Sbjct: 690 KVFHTPLEEVTKRQRSEAKAVNFGIIY 716 >gi|291545365|emb|CBL18473.1| hypothetical protein CK1_00910 [Ruminococcus sp. SR1/5] Length = 124 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 63/118 (53%), Gaps = 6/118 (5%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S PL K GV+ Y E I L AY+ D++PV++ D +P ++L Sbjct: 1 MKTLSIDIETYSDVPLQKTGVYRYVESPDFEILLFAYSVDNQPVQVIDLACGEQIPKEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNA 112 L DE V+ A N+ FERI + LG + + W C+ + + T GLP SL+ Sbjct: 61 LALEDECVIKWAFNATFERICLSRFLGYPTGEYLKPESWRCSMIWSATMGLPLSLEGV 118 >gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] Length = 874 Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/254 (25%), Positives = 102/254 (40%), Gaps = 60/254 (23%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L + +DGR+ TL A+ TGR S QN+P Sbjct: 588 LDPLPKLADADGRIHTTLNNM-ATATGRLSSSNPNLQNIP-------------------- 626 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I PLG +R C +A GK LV AD + IE RVLA ++GE + AFA G DI+ Sbjct: 627 -IRGPLG---RRMRECFVAGPGKTLVAADYSQIELRVLAHLSGEPALLSAFAAGADIHAR 682 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-------------------AKVFKTMA 452 T + F+ P ++ ++R K + L Y G AK F+ ++ Sbjct: 683 TASLLFDKPEAEIGPDERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIAKYFERLS 742 Query: 453 SHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGT 501 L F N+ ++ + + ES + + Q A+ + G Sbjct: 743 G-----LSAFYDNIVESAKTQGYVTTLAGRRRLLPDIESKNSQLASQARRQAINTVVQGG 797 Query: 502 ACELVKKAWRAKHQ 515 A +++K A A H+ Sbjct: 798 AADIIKMAMLAAHK 811 >gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 532 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 102/446 (22%), Positives = 180/446 (40%), Gaps = 92/446 (20%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D+ ++ V HN+ F+ + F ++ G + + + CT ++A+ G E Sbjct: 49 LNDKNIIKVFHNAKFD-VGFFQSKGYRVNN--YHCTLLMAQVLG--------------EE 91 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L+ KAL ++ +D + Q +Y +DVE TR L+ +L+ L Sbjct: 92 KLSL----KALAKKYLDVDMDKSMQHSDNWQETEITQEHIDYAVKDVEHTRALYYKLLDL 147 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK----LDEDI-------VKLTD 229 E +L T+ +R R +V+ I E K LD+D +++ D Sbjct: 148 L-VENNLL----TVYERERRALPAIVMLESNGINMEFDKWNARLDDDRRLAVELEIRIKD 202 Query: 230 GIIRSSRQTYALRMYLFLIT--GIDLVDMSEGTLKSILSHSNITQLAKDL--ILNRLASS 285 + R + + + I GI L S+ L + +L + + ++ + Sbjct: 203 LLNRKELNLNSPKQLVEAIVEYGIKLHSTSDDELAKYSDEHEVIKLIRKYRRLQAKIKTY 262 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 G + K + +DGR+R + G SR+GR S C N P Sbjct: 263 GEKLKKF------IDNDGRIRAHWRLIG-SRSGRMS-C-----NNP-------------- 295 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 PL R +A G KL+ +D + IE RVLA I+ ++ I F NG Sbjct: 296 ----------PLQAMPGNSREFFVADEGYKLIGSDYSQIELRVLASISKDETLISYFNNG 345 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D+++ T + F PID++SKE+R + K + + Y G+ +N Sbjct: 346 IDLHLGTASLIFKKPIDEISKEERQVAKSLNFGIVY--------------GITAYGIQKN 391 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPE 491 ++ + E+AE + + + YP+ Sbjct: 392 LRKSGVDTSLEEAEKYRIEFLNVYPK 417 >gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] Length = 879 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +A+ DGR+R T + + TGR S QNLP + + G Sbjct: 596 LEKAIDEDGRIRSTFR-QNIAATGRLSSQDPNLQNLPIK-------------TDEGR--- 638 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R A GK L+ AD + IE R+LA ++G+ I AF G DI+ T + Sbjct: 639 --------LIRKAFRAEEGKILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTAS 690 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F+T +DKV+K QR+ K + + Y Sbjct: 691 KVFHTDLDKVTKRQRSEAKAVNFGIIY 717 >gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] Length = 903 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 34/195 (17%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 + QLA D L +L ++ KL + L E + D GR+ + AS TGR S Sbjct: 589 LEQLALDYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSYHQAVAS-TGRLSSS 647 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R+EE +R +A +G++LV AD + Sbjct: 648 DPNLQNIPI--RTEE----------------------GRRIRQAFVAPSGRRLVAADYSQ 683 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G+ ++AFA G+DI+ T A+ F +D+VS EQR K + L Y Sbjct: 684 IELRIMAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIY-- 741 Query: 444 GAKVFKTMASHCGLD 458 G F +A G++ Sbjct: 742 GMSAF-GLARQLGIE 755 >gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1] gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1] Length = 928 Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 90/356 (25%), Positives = 146/356 (41%), Gaps = 75/356 (21%) Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLT------DGIIRSSRQTYALRMYLFLITGIDL 253 RI+ + VL Q ++AQ K+L + +L G + T L++ LF GI Sbjct: 538 RIERNGVLIDQAILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKP 597 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNR--LASSGSAILK----------LNTLSEAVSS 301 + G S S + +LA D L + L G + LK +N LS Sbjct: 598 TKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPLS----- 651 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ T + TGR S QN+P R++E Sbjct: 652 -GRVH-TSYHQAVTATGRLSSADPNLQNIPV--RNDE----------------------G 685 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R +A+ G ++V AD + IE R++A ++ + + AFA GEDI+ T ++ F P+ Sbjct: 686 RRIRQAFVAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVPL 745 Query: 422 DKVSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVK 467 DKVS EQR K + L Y G AK + + + ++ +N + Sbjct: 746 DKVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTR 805 Query: 468 STSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512 + + + E E LW+ D A++ K + GTA +++K+A A Sbjct: 806 QLAASKGYVETIEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861 >gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622] gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622] Length = 908 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 27/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 L+TL V++DGR+ T A+ TGR S QN+P R + EI Sbjct: 622 LDTLPTLVAADGRIHTTYH-QAATATGRLSSTDPNLQNIPVRTDLGREI----------- 669 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R +A+ G +LV AD + +E R+LA IA + I+AF + EDI+ Sbjct: 670 --------------RRAFVAAEGHQLVSADYSQVELRLLAHIANDPVLIEAFLHDEDIHT 715 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ F ++V +EQR + K++ + Y Sbjct: 716 RTAAEVFGVAKEQVDREQRRVAKMVNFGIAY 746 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 87/302 (28%), Positives = 133/302 (44%), Gaps = 56/302 (18%) Query: 156 WQLFGEYCKRDVEA-TRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +QL ++ EA T+ELF + IPL D+ L G +D + L E Sbjct: 522 YQLAQQFKPELEEAKTQELFTDIEIPLLHVLADMEL-------EGINLDTKFLNSLAE-- 572 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN 269 LD DI KL I + + + + ++ L + LV + T S + Sbjct: 573 -----DLDNDIKKLEADIYEEAGEEFNIASPKQLGDILFDKLALVKKPKKTKTGQYSTAE 627 Query: 270 --ITQLAKD--LILNRLASSGSAILK---LNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 ++ LAKD +I N L+ G A LK ++ L V S GR+ T + TGR S Sbjct: 628 DVLSYLAKDHKIIENVLSYRGLAKLKSTYVDALPAQVEESTGRVH-TDYMQTVAATGRLS 686 Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVA 379 QN+P R ER + VR + N + LV A Sbjct: 687 SNNPNLQNIPIRTERGRQ-------------------------VRKAFVPRNKEYVLVAA 721 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ E I+AF NGEDI+ +T +K FN P+++V++EQR+ K + + Sbjct: 722 DYSQIELRIIAALSEETTMIEAFKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGI 781 Query: 440 GY 441 Y Sbjct: 782 IY 783 >gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134] gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134] Length = 941 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 31/172 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G +V AD + IE R++A I+G++ ++AFANGEDI+ T ++ F + Sbjct: 702 IREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATASEIFGVDREA 761 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-----------------LQQFSQNV 466 VS EQR KV+ L Y G F +AS+ G++ + Q+ ++ Sbjct: 762 VSSEQRRYAKVINFGLIY--GMSAFG-LASNLGIEREAAKHYIDRYFMRYPGVAQYMEDT 818 Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507 + T+ + + E LW+ D Q E A+ + GTA +L+K Sbjct: 819 RQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPMQGTAADLIK 870 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 76/290 (26%), Positives = 132/290 (45%), Gaps = 53/290 (18%) Query: 166 DVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D TR+LF + +PL + D+ + G +DLD + KL E LD DI Sbjct: 529 DEAKTRKLFNEIEMPLVEVLADMEI-------EGINLDLDFLKKLSE-------ALDRDI 574 Query: 225 VKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQLAKDLI 278 +L I ++ + + + ++ + L + LV + T S S ++ LA + Sbjct: 575 KELEAKIYEAAGEEFKISSPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHE 634 Query: 279 LNRLASSGSAILKL-NTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP- 331 + + ++KL NT +A+ S GR+ T + TGR S QN+P Sbjct: 635 IVQHVLDYRGLVKLQNTYVDALPGQVEKSSGRVH-TDYVQTIAATGRLSSNNPNLQNIPI 693 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 R ER ++ ++ I S+ L+ AD + IE R++A Sbjct: 694 RTERGRQVR------------------------KAFIPRSDDYVLLAADYSQIELRIIAA 729 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ E+ IKAF +GEDI+ +T ++ FN P+++V++EQR+ K + + Y Sbjct: 730 LSEEETMIKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIY 779 >gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424] gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 939 Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A I+G++ ++AFANGEDI+ T A+ F D Sbjct: 700 IREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAAEIFGVERDA 759 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y G F +AS+ G++ Sbjct: 760 VSSEQRRYAKVINFGLIY--GMSAFG-LASNLGIE 791 >gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] Length = 952 Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 72/262 (27%), Positives = 118/262 (45%), Gaps = 44/262 (16%) Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALR------MYLFLITGIDLVDMS----EGTL 261 L+AQE K+L ++ +L + ++ + L LF G+ +V + T Sbjct: 576 LLAQESKELGVEVEQLVEEAHAAAGHPFNLSSPKQLAQILFAEQGLPVVKKTASGTPSTD 635 Query: 262 KSILSHSNITQLAKDLILN--RLASSGSAIL-KLNTLSEAVSSDGRLRGTLQFYGASRTG 318 + +LS + +IL RL S L KL TL + DGR+ T + TG Sbjct: 636 EEVLSELALNYPLPKIILEHRRLTKLKSTYLDKLPTL---IDRDGRIHTTFG-QAVAVTG 691 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P T+T + +R+ A G ++ Sbjct: 692 RLSSMDPNLQNIP---------TRTPEGRR---------------IRTAFTARRGWSVID 727 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E R++A ++ + + AF+ GEDI+ +T A+ F+TP+D+V+ +QR + KV+ Sbjct: 728 ADYSQVELRIMAHLSQDAGLLSAFSRGEDIHRSTAAEVFHTPLDQVTPDQRRMAKVINFG 787 Query: 439 LGYQGGAKVFKTMASHCGLDLQ 460 L Y G F +A GLD Q Sbjct: 788 LIY--GMSAFG-LAQQMGLDRQ 806 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 77/315 (24%), Positives = 124/315 (39%), Gaps = 57/315 (18%) Query: 162 YCKRDVEATRELF---------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 Y RD L+ +RL ++D E L + G ++DLD KL+ L Sbjct: 1193 YASRDTAVLLPLYFILQEKLKAERLDMIADIENKCVLAVCQMEQNGIKVDLD---KLKSL 1249 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID------------LVDMSEGT 260 A K+ + + L D + SS + ++ + + D SE T Sbjct: 1250 QAALDKENETAMKHLGDTLGVSSNPNFNYNSQRQILQALQQQKVMDKTRRGLIQDTSERT 1309 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L H I L + N+ ++ + + + S+ GR+ + GA +GR+ Sbjct: 1310 LSRNTYHPAIQALREYRKTNKAVTAFTEKIP----NHIDSATGRIYPNINQIGA-ESGRF 1364 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S Q +PR R R C IA G KLV+AD Sbjct: 1365 SCDNPNLQQIPRDSR----------------------------FRECFIADKGNKLVIAD 1396 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+ A IA + I+A+ +GED++ T + N PI +V+KE+R + K + L Sbjct: 1397 FSQIELRIAADIAEDRRMIEAYNSGEDLHSLTASLVKNKPISEVTKEERQLAKAVNFGLI 1456 Query: 441 YQGGAKVFKTMASHC 455 + F+ A C Sbjct: 1457 FGMSLAGFRNYAESC 1471 >gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92] gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054] gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] Length = 904 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +AV++DGR+ T A+ TGR Sbjct: 600 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T AS +R + +G +L+ A Sbjct: 644 SSTEPNLQNIP-------IRTD-----------------ASRRIRDAFVVGDGYAELMTA 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 739 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 740 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 766 >gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17] gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46] gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] Length = 904 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 100/222 (45%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +AV++DGR+ T A+ TGR Sbjct: 600 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T AS +R + +G +L+ A Sbjct: 644 SSTEPNLQNIP-------IRTD-----------------ASRRIRDAFVVGDGYAELMTA 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 739 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 740 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 766 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 133/303 (43%), Gaps = 58/303 (19%) Query: 156 WQLFGEYCKRDVEA-TRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +QL + EA T ELF + IPL D+ L G +D + + L E Sbjct: 521 YQLAQHFRPELAEASTEELFNTIEIPLLHVLADMEL-------EGINLDKEFLGSLSE-- 571 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN 269 L+ DI +L I + + Q + + ++ L + LVD + T S + Sbjct: 572 -----DLNNDIKELQSKIYKEADQEFNIASPKQLGEILFDKLKLVDKPKKTKTGQYSTAE 626 Query: 270 --ITQLAKD--LILNRLASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRW 320 ++ LAKD +I N L G + LK +T +A+ GR+ T + TGR Sbjct: 627 DVLSYLAKDHEIIRNVLEYRGLSKLK-STYVDALPLQVEERTGRVH-TDYMQTVAATGRL 684 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVV 378 S QN+P R ER + VR + + L+ Sbjct: 685 SSNNPNLQNIPIRTERGRQ-------------------------VRKAFVPRDEDYTLLA 719 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ ED I+AF NGEDI+ +T +K F+ P+D+V++EQR+ K + Sbjct: 720 ADYSQIELRIIAALSEEDTMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFG 779 Query: 439 LGY 441 + Y Sbjct: 780 IIY 782 >gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568] gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568] Length = 934 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ ++ +KAFA GEDI+ T A+ F P+DK Sbjct: 694 IRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFAAGEDIHRATAAEVFGLPLDK 753 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 754 VTNEQRRSAKAINFGLIY 771 >gi|331087492|ref|ZP_08336428.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium 3_1_46FAA] gi|330410472|gb|EGG89903.1| hypothetical protein HMPREF1025_00011 [Lachnospiraceae bacterium 3_1_46FAA] Length = 164 Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 49/136 (36%), Positives = 68/136 (50%), Gaps = 10/136 (7%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L K GV+ YAE + L Y+ D VK+ D + +P +++ L Sbjct: 23 LEIDIETFSSVNLAKAGVYRYAESPDFEVLLFGYSVDGGEVKVGDLVKGEKIPEEVMSAL 82 Query: 62 RDETVMCVAHNSLFERILFKKTLGID-----IPSKRWICTSVLARTNGLPSSLKNACLAL 116 DE V A N+ FERI + LG + +P+ W C+ V + GLP SL+ L Sbjct: 83 EDEAVTKWAFNAQFERICISRMLGYEAGTYLVPAS-WKCSMVWSAYMGLPLSLEGVGAVL 141 Query: 117 NFSEHLTKMEEGKALI 132 + K+ EGK LI Sbjct: 142 GLEKQ--KLTEGKDLI 155 >gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3] Length = 829 Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 28/174 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V DGR+ T + +RTGR S QN+P + Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIP---------------------VR 583 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 PLG +R A +G LV AD + IE RVLA I+G++ KAF +G DI+ T + Sbjct: 584 TPLGRE---MRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + FN PI+ V+ + R+ K + + Y GA +++ G+ + + S+ ++S Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA---FSLSKDIGVSVPKASEYIRS 691 >gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a] Length = 829 Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 28/174 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V DGR+ T + +RTGR S QN+P + Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIP---------------------VR 583 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 PLG +R A +G LV AD + IE RVLA I+G++ KAF +G DI+ T + Sbjct: 584 TPLGRE---MRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + FN PI+ V+ + R+ K + + Y GA +++ G+ + + S+ ++S Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA---FSLSKDIGVSVPKASEYIRS 691 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 7/120 (5%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 RSC + ++G KL++AD + IE R+ A IA + I A+ N +D++ T A P+D+V Sbjct: 425 RSCFVPASGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEV 484 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDL-----QQFSQN-VKSTSTFEDWEQ 477 +K++R +GK + L Y GA + A ++ G+ + Q+F N K W Q Sbjct: 485 TKQERQLGKAVNFGLIYGMGATKLRIYAETNYGVKMSIEEAQRFRDNFFKGYPGLHQWHQ 544 >gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160] gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160] Length = 913 Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ ++AF+ GEDI+ T ++ FN + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR + KV+ L Y G F +AS+ G+ Sbjct: 734 VSSDQRRVAKVINFGLIY--GMSAF-GLASNLGI 764 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 1/80 (1%) Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R IA + L+ AD + IE R++A + GE+ IKAF N EDI+ +T AK FN P+ Sbjct: 709 LIRKAFIARDENYTLLSADYSQIELRIIAALCGEENMIKAFQNHEDIHKSTAAKVFNIPL 768 Query: 422 DKVSKEQRAIGKVMELALGY 441 D+V+KEQR+ K + + Y Sbjct: 769 DEVTKEQRSHAKTVNFGIIY 788 >gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002] gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002] Length = 913 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ ++AF+ GEDI+ T ++ FN + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQGEDIHRATASEIFNVTPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR + KV+ L Y G F +AS+ G+ Sbjct: 734 VSSDQRRVAKVINFGLIY--GMSAF-GLASNLGI 764 >gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305] gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305] Length = 950 Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 49/78 (62%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A +A ++ +KAFA G+DI+ +T ++ F P+D+ Sbjct: 712 IRQAFIARKGYKIVAADYSQIELRIMAHLANDEGMLKAFAEGKDIHRSTASEIFGVPLDE 771 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 772 VTGEQRRNAKAINFGLIY 789 >gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97] gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11] gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503] gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A] gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85] gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207] gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506] gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475] gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv] gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97] gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11] gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A] gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207] gi|740010|prf||2004291B DNA polymerase I Length = 904 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +AV++DGR+ T A+ TGR Sbjct: 600 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T A +R + +G +L+ A Sbjct: 644 SSTEPNLQNIP-------IRTD-----------------AGRRIRDAFVVGDGYAELMTA 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 739 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 740 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 766 >gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 899 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 27/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 L+TL V+ DGR+ T A+ TGR S QN+P R E EI Sbjct: 613 LDTLPGLVAKDGRIHTTYH-QAATATGRLSSSDPNLQNIPVRTELGREI----------- 660 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R +A G +LV AD + +E R+LA IA + + AF + EDI+ Sbjct: 661 --------------RRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHS 706 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ F DKV ++QR + K + + Y Sbjct: 707 RTAAEIFGVTPDKVDRDQRRVAKTVNFGIAY 737 >gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] Length = 929 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 32/78 (41%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G ++V AD + IE R++A ++G++ +KAFA GEDI+ T A+ F+ +D Sbjct: 690 IREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFAAGEDIHRATAAEVFSVALDA 749 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 750 VSSEQRRYAKVINFGLIY 767 >gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] Length = 903 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +AV++DGR+ T A+ TGR Sbjct: 599 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 642 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T A +R + +G +L+ A Sbjct: 643 SSTEPNLQNIP-------IRTD-----------------AGRRIRDAFVVGDGYAELMTA 678 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 679 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 738 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 739 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 765 >gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] Length = 829 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 52/174 (29%), Positives = 83/174 (47%), Gaps = 28/174 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V DGR+ T + +RTGR S QN+P + Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIP---------------------VR 583 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 PLG +R A +G LV AD + IE RVLA I+G++ KAF +G DI+ T + Sbjct: 584 TPLGRE---MRRFFTAKDGCLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + FN PI+ V+ + R+ K + + Y GA +++ G+ + + S+ ++S Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGA---FSLSKDIGVSVPKASEYIRS 691 >gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 852 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 27/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 L+TL V+ DGR+ T A+ TGR S QN+P R E EI Sbjct: 566 LDTLPGLVAKDGRIHTTYH-QAATATGRLSSSDPNLQNIPVRTELGREI----------- 613 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R +A G +LV AD + +E R+LA IA + + AF + EDI+ Sbjct: 614 --------------RRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHS 659 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ F DKV ++QR + K + + Y Sbjct: 660 RTAAEIFGVTPDKVDRDQRRVAKTVNFGIAY 690 >gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987] gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A] gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85] gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210] gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148] Length = 904 Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +AV++DGR+ T A+ TGR Sbjct: 600 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T A +R + +G +L+ A Sbjct: 644 SSTEPNLQNIP-------IRTD-----------------AGRRIRDAFVVGDGYAELMTA 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 680 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 739 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 740 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 766 >gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 814 Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 99/222 (44%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +AV++DGR+ T A+ TGR Sbjct: 583 LQHLLAHRDVTRLK---------------VTVDGLLQAVAADGRIHTTFNQTIAA-TGRL 626 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T A +R + +G +L+ A Sbjct: 627 SSTEPNLQNIP-------IRTD-----------------AGRRIRDAFVVGDGYAELMTA 662 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 663 DYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 722 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 723 AY--------------GLSAYGLSQQLK-ISTEEANEQMDAY 749 >gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] Length = 936 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 87/308 (28%), Positives = 132/308 (42%), Gaps = 62/308 (20%) Query: 169 ATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 A R+L+ R+ +PL D D+ L G +D + + +L + AQ +L E I Sbjct: 524 ALRDLYYRVELPLIDVLTDMEL-------TGILLDHEYLRELGKRFAQRIAELTEQIYAK 576 Query: 228 TDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKS--------ILSH-SNITQLAKD 276 G I S +Q L LF GI+ D LKS +L S + +A D Sbjct: 577 AGGPFNINSGQQ---LNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEELSQLYPIAAD 633 Query: 277 LI----LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 ++ L +L S+ ++ L + V+ GR+ + GA+ TGR S QN+P Sbjct: 634 ILAYRQLTKLKST-----YIDALPQLVNPRTGRIHTSYNQIGAA-TGRLSSNNPNLQNIP 687 Query: 332 -RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 R E EI R +A+ G + V AD + IE RVLA Sbjct: 688 VRTEEGREI-------------------------RRAFVAAPGHRFVAADYSQIELRVLA 722 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 I+G++ I AF G DI+ T ++ F D+V K QR + K + + Y G F Sbjct: 723 HISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIY--GISAFG- 779 Query: 451 MASHCGLD 458 +A G++ Sbjct: 780 LAQRLGIE 787 >gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] Length = 939 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 39/233 (16%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +L+ +D + IE R++A ++G+ +KAFA G+DI+ T A+ FN P+++ Sbjct: 700 IRQAFIAQPGYRLMASDYSQIELRIMAHLSGDASLLKAFAEGKDIHQATAAEIFNMPLEE 759 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTM--ASHCGLD--LQQFSQN 465 V+ EQR K + L Y +G A+ + + A + G+ ++ +N Sbjct: 760 VTSEQRRSAKAVNFGLIYGMSAFGLAKQLNISRGLAQEYINLYFARYPGVANYMESTKEN 819 Query: 466 VKSTSTFEDWEQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVKKAWRAKHQ 515 K T E L++ D QY E A+ + GTA +++K A Sbjct: 820 AKQTGYVETL---MGRRLYLPDINAKNGQLRQYAERTAINAPMQGTAADIIKTAMVK--- 873 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 +Q W D T C ++ + V V M + ++++ ++ ++ +L Sbjct: 874 --MQQWLDQT---PCDIKMLMQVHDELVFEVAEADMDQARKEIKTIMEAALKL 921 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G +V AD + IE R++A I+G++ ++AFANGEDI+ T + F + Sbjct: 695 IREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREA 754 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y G F +AS+ G++ Sbjct: 755 VSSEQRRYAKVINFGLIY--GMSAFG-LASNLGIE 786 >gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202] gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202] Length = 950 Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A +A + +KAFA G+DI+ +T ++ F P+D+ Sbjct: 712 IRQAFIARKGYKIVAADYSQIELRIMAHLANDKGMLKAFAEGKDIHRSTASEIFGVPLDE 771 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 772 VTGEQRRNAKAINFGLIY 789 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 71/259 (27%), Positives = 116/259 (44%), Gaps = 49/259 (18%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDL 253 G +D D + L E +L+ DI L I ++ + + + ++ + L + L Sbjct: 562 GINLDKDFLNSLSE-------ELNTDIANLEKSIYEAAGEEFNIASPKQLGVILFEKMKL 614 Query: 254 VDMSEGTLKSILSHSN--ITQLAKD--LILNRLASSGSAILKLNTLSEAV-----SSDGR 304 VD + T S + ++ LAKD +I L G + LK +T +A+ S GR Sbjct: 615 VDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVLDFRGLSKLK-STYVDALPLQVDESTGR 673 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P R ER + Sbjct: 674 VH-TDYMQTVAATGRLSSNNPNLQNIPIRTERGRQ------------------------- 707 Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR + + L+ AD + IE R++A ++ E+ I+AF NGEDI+ +T +K FN PI Sbjct: 708 VRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKNGEDIHASTASKVFNVPIT 767 Query: 423 KVSKEQRAIGKVMELALGY 441 +V++EQR+ K + + Y Sbjct: 768 EVTREQRSNAKTVNFGIIY 786 >gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens] gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens] Length = 896 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%) Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 G Y D + T L +L P L D E L + + G ID ++ K Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523 Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + ++ K L+++ ++L + S +Q L+ LF + +V + T + + S Sbjct: 524 SRLKEQMKSLEQEAIQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579 Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA D +IL + S ++ L + ++ T + TGR S Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P RSEE +R+ IA G ++ AD + Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ +D ++AFANG DI+ T ++ F T +D VSKEQR K + L Y Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIY-- 733 Query: 444 GAKVFKTMASHCGLDLQ 460 G F +A G++ Q Sbjct: 734 GMSAF-GLAKQIGVERQ 749 >gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu] Length = 917 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AF+NGEDI+ T A+ F + Sbjct: 678 IREAFIASPGHQIVSADYSQIELRIMAHISGDASLLRAFSNGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 738 VTADQRRIAKVINFGLIY--GMSAFG-LASNLGI 768 >gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M] gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M] Length = 913 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ ++AF+ GEDI+ T A+ F+ + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSEGEDIHRATAAEIFSVTPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR + KV+ L Y G F +AS+ G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764 >gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003] gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003] Length = 913 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ ++AF+ GEDI+ T A+ F+ + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR + KV+ L Y G F +AS+ G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764 >gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001] gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001] Length = 913 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ ++AF+ GEDI+ T A+ F+ + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR + KV+ L Y G F +AS+ G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764 >gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 896 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%) Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 G Y D + T L +L P L D E L + + G ID ++ K Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHG 523 Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + ++ K L+++ V+L + S +Q L+ LF + +V + T + + S Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579 Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA D +IL + S ++ L + ++ T + TGR S Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P RSEE +R+ IA G ++ AD + Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ +D ++AFANG DI+ T ++ F T +D VSKEQR K + L Y Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIY-- 733 Query: 444 GAKVFKTMASHCGLDLQ 460 G F +A G++ Q Sbjct: 734 GMSAF-GLAKQIGVERQ 749 >gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] Length = 940 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/236 (27%), Positives = 107/236 (45%), Gaps = 40/236 (16%) Query: 220 LDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSN--ITQL 273 L EDI KL I + + + L ++ L L + LVD + T S + ++ L Sbjct: 569 LAEDIQKLEAAIFEVAGENFNLASPKQLGLILFDKLKLVDKPKKTKTGQYSTAEDVLSYL 628 Query: 274 AKDLILNRLASSGSAILKL-NTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGCVFQP 327 AKD + ++ KL NT +A+ ++ GR+ T+ + TGR S Sbjct: 629 AKDHPIISDILDWRSLQKLQNTYVDALPNEINPKTGRVH-TIYNQAVAATGRLSSNNPNL 687 Query: 328 QNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIE 385 QN+P R ER ++ VR I + L+ AD + IE Sbjct: 688 QNIPIRTERGQQ-------------------------VRKAFIPRDENHVLMAADYSQIE 722 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A ++G++ + AF N EDI+ T +K FN P+++V++EQR K + + Y Sbjct: 723 LRIIAALSGDEGMLSAFQNNEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIY 778 >gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB] gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB] Length = 928 Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 85/350 (24%), Positives = 144/350 (41%), Gaps = 63/350 (18%) Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLT------DGIIRSSRQTYALRMYLFLITGIDL 253 RI+ + VL Q ++AQ K+L + +L G + T L++ LF GI Sbjct: 538 RIERNGVLIDQSILAQHSKELTARLAELELKAHELAGEPFNLSSTKQLQVILFEKQGIKP 597 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRG 307 + G S S + +LA D L ++ + KL +T ++ + GR+ Sbjct: 598 TKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPISGRVH- 655 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + TGR S QN+P R++E +R Sbjct: 656 TSYHQAVTATGRLSSADPNLQNIPV--RNDE----------------------GRRIRQA 691 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A+ G ++V AD + IE R++A ++ + + AFA GEDI+ T ++ F +DKVS E Sbjct: 692 FVAAKGHRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALDKVSGE 751 Query: 428 QRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 QR K + L Y G AK + + + ++ +N + + Sbjct: 752 QRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASN 811 Query: 474 DW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512 + E E LW+ D A++ K + GTA +++K+A A Sbjct: 812 GYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861 >gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] Length = 933 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ + +KAFA G+DI+ T A+ F P+DK Sbjct: 693 IRQAFIAPEGYRIVAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGVPLDK 752 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 753 VASEQRRSAKAINFGLIY 770 >gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 933 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 55/99 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ AD + IE R++A ++ + I AFA G+DI+ +T A+ F P+++ Sbjct: 695 IRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIFGLPLEQ 754 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 V+ EQR K + L Y + VF D Q++ Sbjct: 755 VTSEQRRNAKAINFGLIYGMSSFVFPARLGISRADAQRY 793 >gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium] Length = 803 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 30/183 (16%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H IT++ + L +L S+ ++ L VS+DGRLR T GA+ TGR + Sbjct: 487 HPIITEILRYRELQKLVST-----YIDNLPPLVSADGRLRTTFVQTGAA-TGRMASQNPN 540 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P R+EE S +R +AS G +V D + IE Sbjct: 541 LQNIPI--RTEE----------------------SKAIRQAFVASPGYSIVSIDYSQIEL 576 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+ A ++ ++ ++ FA GED++ + F ++V++E R KV+ + Y G Sbjct: 577 RIAAILSRDEKMVEIFARGEDVHTGVAVRVFGVTPEEVTREMRRKAKVINFGILYGMGVN 636 Query: 447 VFK 449 + Sbjct: 637 ALR 639 >gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4] gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4] Length = 917 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AFA+GEDI+ T A+ F + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAHGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768 >gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126] Length = 930 Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR + G K V AD + IE R++A ++G+ + AFA+G+DI+ T A+ F P+D+ Sbjct: 690 VRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHGKDIHKATAAEVFGVPLDE 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTTEQRRSAKAINFGLIY 767 >gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6] gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6] Length = 951 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 25/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ T GA+ TGR S QN+P + TQ + + RG Sbjct: 667 GRVHTTYNQVGAA-TGRLSSNDPNLQNIP-------VRTQEGREIRRG------------ 706 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +A+ G + + AD + IE RVLA+I + ++AF G+DI+ T A+ F ID Sbjct: 707 -----FVAAPGHRFIAADYSQIELRVLAYITKDPNLVRAFQEGQDIHAATAAQLFGVAID 761 Query: 423 KVSKEQRAIGKVMELALGY 441 +V KEQR I K + + Y Sbjct: 762 QVDKEQRRIAKTVVFGVIY 780 >gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5] gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5] Length = 917 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 31/172 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AFA GEDI+ T A+ F + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ +QR I KV+ L Y G F +AS+ G+ + Q+ ++ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGITRDAAKLYIDRYFTRYPGVAQYMEDT 794 Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507 ++T+ + + E LW+ + Q E A+ + GTA +L+K Sbjct: 795 RTTAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 846 >gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] Length = 948 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 40/246 (16%) Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSIL 265 QE + + L+ DI L I + + + + ++ L + LVD + T Sbjct: 567 QEFLGSLSEALNNDIASLEKSIYEEAGEEFNIGSPKQLGEILFDKLKLVDKPKKTRTGQY 626 Query: 266 SHSN--ITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSD-GRLRGTLQFYGASRT 317 S + ++ LA D ++ + L G + LK ++ L V++ GR+ T + T Sbjct: 627 STAEDVLSYLAPDHEIVQHVLDYRGLSKLKSTYVDALPAQVNAKTGRVH-TDYMQTVAAT 685 Query: 318 GRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK- 375 GR S QN+P R ER + VR + N Sbjct: 686 GRLSSNNPNLQNIPIRTERGRQ-------------------------VRKAFVPRNEDYV 720 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++ E+ +KAF GEDI+ +T AK FN PID+V++EQR+ K + Sbjct: 721 LLAADYSQIELRIIAALSQEETMMKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTV 780 Query: 436 ELALGY 441 + Y Sbjct: 781 NFGIIY 786 >gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] Length = 877 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L A+ DGR+R T + AS TGR S QNLP I T +A Sbjct: 594 LENAIDEDGRIRSTFRQNIAS-TGRLSSQEPNLQNLP-------IKTDEGRA-------- 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R A GK L+ AD + IE R+LA +A + AF G DI+ T + Sbjct: 638 ---------IRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNRGIDIHTQTAS 688 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+TP+D+V+K QR+ K + + Y Sbjct: 689 EVFHTPLDEVTKLQRSEAKAVNFGIIY 715 >gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803] gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803] Length = 942 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 54/301 (17%) Query: 156 WQLFGEYCKRDVEA-TRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +QL + K EA TR+LF + IPL + D+ L G ++D + + L E + Sbjct: 519 FQLKNLFEKELEEAETRKLFNEIEIPLVEVLADMEL-------EGIKLDEEYLKSLSEAL 571 Query: 214 AQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN-- 269 A + K L+ I + + +I S +Q + + L ++L + T S S Sbjct: 572 ASDIKDLETKIYEAAGEEFLISSPKQ-----LGIILFEKMELSKKPKKTKTGQYSTSEDV 626 Query: 270 ITQLAK--DLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASRTGRWSG 322 ++ LA+ D++ + L G L+ NT +A+ + GR+ T + TGR S Sbjct: 627 LSSLAEENDIVQHVLDYRGLVKLQ-NTYVDALPNQVERTTGRVH-TDYVQTTAATGRLSS 684 Query: 323 CVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P R ER ++ VR + + L+ AD Sbjct: 685 NNPNLQNIPIRTERGKQ-------------------------VRKAFVPRDENYVLLAAD 719 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ E+ I+AF +GEDI+ +T AK FN P+++V++EQR+ K + + Sbjct: 720 YSQIELRIIAALSNEENMIQAFKDGEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGII 779 Query: 441 Y 441 Y Sbjct: 780 Y 780 >gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010] gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010] Length = 894 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 84/176 (47%), Gaps = 25/176 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +ASNG L+ AD + IE R++A ++G++ +KAFA GEDI+ T ++ F+ ++ Sbjct: 655 IREAFVASNGYTLLAADYSQIELRIMAHLSGDESLLKAFAAGEDIHRHTASEIFDIALED 714 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKT---MASHCGLD-----------LQQFSQNVKST 469 VS +QR K + L Y A + H D ++Q+ N + Sbjct: 715 VSSDQRRSAKAINFGLIYGMSAHGLSKQLGIERHQAADYMQTYFDRYPGVRQYMDNTREQ 774 Query: 470 STFEDW-EQAESHHLW---------MQDQYPE-FAVKDKLIGTACELVKKAWRAKH 514 + + + E L+ M+ QY E A+ + G+A +++K+A A H Sbjct: 775 AKEQGYVETIFGRRLYLPEINSSNGMRRQYAERTAINAPMQGSAADIIKRAMIAIH 830 >gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396] gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396] Length = 911 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R++A ++G++ +KAF+ G D++ T A+ FN D+ Sbjct: 671 IRQAFIAPKGCKLISADYSQIELRIMAHLSGDEGLLKAFSEGLDVHQATAAEVFNVAFDE 730 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 731 VSSEQRRKAKAINFGLIY 748 >gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 929 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ + AFANG DI+ T ++ F T +DK Sbjct: 690 IRQAFIAPQGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGTALDK 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTSEQRRSAKAINFGLIY 767 >gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby] gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby] Length = 896 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%) Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 G Y D + T L +L P L D E L + + G ID ++ K Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHG 523 Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + ++ K L+++ V+L + S +Q L+ LF + +V + T + + S Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579 Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA D +IL + S ++ L + ++ T + TGR S Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P RSEE +R+ IA G ++ AD + Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ +D ++AFANG DI+ T ++ F T ++ VSKEQR K + L Y Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIY-- 733 Query: 444 GAKVFKTMASHCGLDLQ 460 G F +A G++ Q Sbjct: 734 GMSAF-GLAKQIGVERQ 749 >gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 929 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ + AFANG DI+ T ++ F T +DK Sbjct: 690 IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGTALDK 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTSEQRRSAKAINFGLIY 767 >gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6] gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6] Length = 917 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AFA GEDI+ T A+ F + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768 >gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris] gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris] Length = 896 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%) Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 G Y D + T L +L P L D E L + + G ID ++ K Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523 Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + ++ K L+++ V+L + S +Q L+ LF + +V + T + + S Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579 Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA D +IL + S ++ L + ++ T + TGR S Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P RSEE +R+ IA G ++ AD + Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ +D ++AFANG DI+ T ++ F T ++ VSKEQR K + L Y Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIY-- 733 Query: 444 GAKVFKTMASHCGLDLQ 460 G F +A G++ Q Sbjct: 734 GMSAF-GLAKQIGVERQ 749 >gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD] gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD] Length = 917 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AFA GEDI+ T A+ F + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768 >gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis] Length = 931 Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 32/308 (10%) Query: 162 YCKRDVEATRELFKRLIPLSDGE---RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 Y D + T E+ + L PL R ++ L+ ++ +R++ + VL L+AQ+ Sbjct: 501 YACEDSDQTLEVHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSH 560 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSILSHSNITQ 272 L + I++L + Q + L F G+ +V + +S + + + Sbjct: 561 ALGQRILRLETEAYEIAGQPFNLNSPKQLGEIFFDKLGMPVVRKTTTGARST-NEEVLEK 619 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LA D L + +L+ +LS+ S+ G L RTGR Q + Sbjct: 620 LAADYPLP------ARLLEHRSLSKLKSTYTDKLGLLAL---PRTGRVHTHYAQAVAVTG 670 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + S + Q I + P G +R +A G+ + AD + IE R++A I Sbjct: 671 RLSSSDPNLQNI-------PVRTPEG---RRIREAFVAPPGRVIASADYSQIELRIMAHI 720 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + AF +G D++ T A+ F P+ +VS EQR KV+ L Y G F +A Sbjct: 721 SGDPSLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIY--GMSSFG-LA 777 Query: 453 SHCGLDLQ 460 + GLD Q Sbjct: 778 KNLGLDRQ 785 >gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] Length = 950 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 31/182 (17%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSS-----DGRLRGTLQFYGASRTGR 319 S +++LA++ L ++A I KL T +E + DGR+ T + + TGR Sbjct: 633 SEEVLSELAENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFE-QAVAVTGR 691 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R+EE VR I+++G KL+ A Sbjct: 692 LSSTNPNLQNIPI--RTEE----------------------GRKVREAFISASGCKLISA 727 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + ++AF N EDI+ T A+ F DKV+ R I KV+ L Sbjct: 728 DYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGL 787 Query: 440 GY 441 Y Sbjct: 788 MY 789 >gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] Length = 917 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AFA GEDI+ T A+ F + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768 >gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] Length = 896 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 81/317 (25%), Positives = 134/317 (42%), Gaps = 47/317 (14%) Query: 160 GEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 G Y D + T L +L P L D E L + + G ID ++ K Sbjct: 464 GIYAAEDADITLRLHHKLYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHG 523 Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + ++ K L+++ V+L + S +Q L+ LF + +V + T + + S Sbjct: 524 SRLKEQMKSLEQEAVQLAGKAFNLNSPKQ---LQEILFDEQKLPVVAKTP-TGQPSTAES 579 Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA D +IL + S ++ L + ++ T + TGR S Sbjct: 580 VLQELAFDYRLPAVILEYRSLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSS 639 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P RSEE +R+ IA G ++ AD + Sbjct: 640 DPNLQNIPI--RSEE----------------------GRLIRTAFIAPEGSLIMAADYSQ 675 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++ +D ++AFANG DI+ T ++ F T ++ VSKEQR K + L Y Sbjct: 676 IELRIMAHLSQDDNLLRAFANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIY-- 733 Query: 444 GAKVFKTMASHCGLDLQ 460 G F +A G++ Q Sbjct: 734 GMSAF-GLAKQIGVERQ 749 >gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica] Length = 929 Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 49/78 (62%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G +++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F+ P+++ Sbjct: 690 IRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLLKAFAEGQDIHRATAAEVFDVPLEQ 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTSEQRRSAKAINFGLIY 767 >gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] Length = 891 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 54/182 (29%), Positives = 84/182 (46%), Gaps = 31/182 (17%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSS-----DGRLRGTLQFYGASRTGR 319 S +++LA++ L ++A I KL T +E + DGR+ T + + TGR Sbjct: 574 SEEVLSELAENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFE-QAVAVTGR 632 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R+EE VR I+++G KL+ A Sbjct: 633 LSSTNPNLQNIPI--RTEE----------------------GRKVREAFISASGCKLISA 668 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + ++AF N EDI+ T A+ F DKV+ R I KV+ L Sbjct: 669 DYSQIELRIMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGL 728 Query: 440 GY 441 Y Sbjct: 729 MY 730 >gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815] gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815] Length = 915 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ ++AF GEDI+ T ++ F+ + Sbjct: 676 IREAFIAPPGHKLVSADYSQIELRIMAHISGDEALLRAFKQGEDIHRATASEVFSVTPLE 735 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR I KV+ L Y G F +AS+ G+ Sbjct: 736 VSNDQRRIAKVINFGLIY--GMSSFG-LASNLGI 766 >gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63] Length = 854 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 51/161 (31%), Positives = 72/161 (44%), Gaps = 32/161 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344 KLN+ L + ++ DGR+ +RTGR S QN+P R E E+ Sbjct: 561 KLNSTYCEGLLKVIADDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRTELGREM----- 614 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 R A +G LV AD + IE RVLA I+G+ IKAF + Sbjct: 615 --------------------RKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKD 654 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 EDI+ T ++ FN P+D V+ R+ K + + Y GA Sbjct: 655 NEDIHAITASQVFNMPLDMVTPIMRSRAKAVNFGIVYGIGA 695 >gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN] gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN] Length = 913 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ ++AF+ GEDI+ T A+ F+ + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR + KV+ L Y G F +A++ G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LAANLGI 764 >gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043] Length = 929 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G +V AD + IE R++A ++G+ + AFANG DI+ T ++ F +DK Sbjct: 690 IRQAFIASKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDK 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTSEQRRSAKAINFGLIY 767 >gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 885 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +++S G LV +D + IE RVLA ++ + + I AFA+G DI+ T ++ F+TP D Sbjct: 645 LIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYD 704 Query: 423 KVSKEQRAIGKVMELALGY 441 +VS E R++ K + + Y Sbjct: 705 EVSDELRSMAKAVNFGIVY 723 >gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] Length = 874 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 112/257 (43%), Gaps = 38/257 (14%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQT-----YALRMYLFLITG 250 G ++D + + E + ++ ++ ED+ + G IRS++Q L++ + T Sbjct: 487 GVKLDAEALADFLEEVQKDLDRITEDVYREAQGPFNIRSAQQLGDVLFNRLKLPVSGKTR 546 Query: 251 IDLVDMSEGTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 S+ L+ + H + L + L +L S+ L L + DGR+R T Sbjct: 547 GGQASTSQDVLEKLSGHHPVVDALLEFRKLEKLRST-----YLEPLPRLMGGDGRIRTTF 601 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A+ TGR S QN+P + AL R +R+C Sbjct: 602 NQL-ATATGRLSSSNPNLQNIPVR-----------GALGR-------------RMRACFT 636 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A GKKL+ AD + IE RVLA ++ ++ + AF G DI+ T + F+ P +++ +QR Sbjct: 637 APEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLFDAPPSEITPDQR 696 Query: 430 AIGKVMELALGYQGGAK 446 K + L Y G + Sbjct: 697 RNAKTINFGLIYGMGPQ 713 >gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 921 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 25/155 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L + +GR+ T A+ TGR S QN+P RG+ Sbjct: 631 LDPLPRLMDGNGRIHTTFN-QKATATGRLSSSNPNLQNIP----------------VRGD 673 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 LG +R+C IA+ G LV AD + +E RVLA ++ + ++AF NGEDI+ Sbjct: 674 -----LG---KRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGEDIHAR 725 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 T A ++ D+VS +QR K + L Y GA+ Sbjct: 726 TAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGAQ 760 >gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] Length = 897 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 33/179 (18%) Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGC 323 + +LA+ L RL ++ KL + L + V +DGR+ T GA+ TGR S Sbjct: 583 LEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSS 641 Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R E S I R +A G +L+ AD + Sbjct: 642 DPNLQNIPVRTELSRRI-------------------------RQAFVAPAGARLLSADYS 676 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R+LA + + ++AF + ED++ T A+ F P ++V+ +QR I KV+ + Y Sbjct: 677 QIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAY 735 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 20/165 (12%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+C A G+KL++AD + IE RV A I+G+ I A+ GED+++ T + + PI+++ Sbjct: 350 RACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIEEI 409 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASH---CGLDLQQFSQ----NVKSTSTFEDWEQ 477 S ++R K + L + GA + A + L+Q ++ K+ + W Q Sbjct: 410 SPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQ 469 Query: 478 AESHHLWMQDQ--------YPEFA-----VKDKLIGTACELVKKA 509 + HL + + Y E A + GTA ++VKKA Sbjct: 470 SIKAHLPKEGRTLAGRKFVYYEKAGLPGYYNTPVQGTAADIVKKA 514 >gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581] gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581] Length = 922 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +LV AD + IE R++A ++G+ + AFA G DI+ T A+ F +DK Sbjct: 683 IRQAFVARPGYRLVAADYSQIELRIMAHLSGDKGLLDAFAQGRDIHAATAAEVFGVALDK 742 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 743 VSGEQRRSAKAINFGLIY 760 >gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] Length = 885 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 50/79 (63%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +++S G LV +D + IE RVLA ++ + + I AFA+G DI+ T ++ F+TP D Sbjct: 645 LIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASEVFHTPYD 704 Query: 423 KVSKEQRAIGKVMELALGY 441 +VS E R++ K + + Y Sbjct: 705 EVSDELRSMAKAVNFGIVY 723 >gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT] gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT] Length = 951 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 C+R IA G K++ AD + IE R++A ++ ++ I AF G+DI+ +T A+ F P++ Sbjct: 713 CIRQAFIARKGYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLN 772 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ EQR K + L Y Sbjct: 773 EVTSEQRRSAKAINFGLIY 791 >gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1] gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1] Length = 913 Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ +++F+ GEDI+ T A+ F+ + Sbjct: 674 IREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR + KV+ L Y G F +AS+ G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764 >gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1] gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1] Length = 917 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G K+V AD + IE R++A I+G++ ++AF+ GEDI+ T A+ F + Sbjct: 678 IREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFSQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR I KV+ L Y G F +AS+ G+ Sbjct: 738 VSTDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768 >gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259] gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259] Length = 907 Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 38/95 (40%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G LV AD + IE R++A ++ + + AFAN DI+ T A+ F P+D Sbjct: 668 IREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLLHAFANDLDIHTATAAEVFGVPLDA 727 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR I KV+ L Y G F +AS L+ Sbjct: 728 VSAEQRRIAKVINFGLIY--GMSAFG-LASQLNLE 759 >gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH] Length = 926 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A I+ ++ ++AFANGEDI+ T A+ F + Sbjct: 687 IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFANGEDIHRATAAEVFGVTPLE 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777 >gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336] gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336] Length = 951 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 C+R IA G K++ AD + IE R++A ++ ++ I AF G+DI+ +T A+ F P++ Sbjct: 713 CIRQAFIARKGYKIIAADYSQIELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLN 772 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ EQR K + L Y Sbjct: 773 EVTSEQRRSAKAINFGLIY 791 >gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20] gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 957 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHCATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8] gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8] Length = 857 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 30/178 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 +++L + V +DGR+R + +RTGR S QN+P R+E + R Sbjct: 570 VDSLLKEVEADGRVRSVFK-QTETRTGRISSTEPNMQNIPVRKE------------IGRN 616 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R +A +G + AD + IE RVLA + G++ K FA+G DI+ Sbjct: 617 -------------MRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIHT 663 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 T ++ F P D V E R+ K + + Y GA +++ G+ +++ Q +K+ Sbjct: 664 MTASQVFGIPADAVLPEMRSAAKAVNFGIIYGIGA---FSLSKDIGVSVKEAKQYIKN 718 >gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] Length = 977 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A I+ + +KAFA+GED++ T ++ F PI + Sbjct: 738 IREAFIAPPGHQMMSADYSQIELRIMAHISQDAGLLKAFADGEDVHRATASEVFGVPIAE 797 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR KV+ L Y G F +A++ G++ Sbjct: 798 VNSEQRRYAKVINFGLIY--GMSAFG-LAANLGIE 829 >gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15] Length = 868 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A ++G+ +KAF GEDI+ T ++ F +D Sbjct: 628 IRQAFIAPEGYKLVAADYSQIELRIMAHLSGDKGLLKAFEKGEDIHKATASEVFGVSLDD 687 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 688 VSSDQRRSAKAINFGLIY 705 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 23/164 (14%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 RSC + + G KL++AD + IE R+ A IA + I A+ N +D++ T A ID+V Sbjct: 425 RSCFVPAPGYKLIIADYSQIELRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEV 484 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 +K++R +GK + L Y GA + A ++ G+ + F + + F ++ H Sbjct: 485 TKQERQLGKAVNFGLIYGMGATKLRIYAETNYGVSM-TFDEAQRFRDNF--FKGYPGLHQ 541 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKH----QGVLQLWKD 523 W QD TAC+L + + K G L+ WKD Sbjct: 542 WHQD-------------TACKL--RTTKVKDIRTLSGRLRRWKD 570 >gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1] Length = 845 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 77/160 (48%), Gaps = 30/160 (18%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KLN+ L + ++ DGR+ + +RTGR S QN+P R+E Sbjct: 552 KLNSTYVVGLLDKIADDGRIHTWFR-QTETRTGRISSTEPNMQNIPV--RTE-------- 600 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 LG +R +A G+KLV AD + IE RV+A + G+ I+AF +G Sbjct: 601 -----------LGAQ---MRKFFVAPKGRKLVDADYSQIELRVMAHLCGDKNMIEAFNSG 646 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 EDI+ +T A+ F+ P V+ E R+ K + + Y GA Sbjct: 647 EDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGA 686 >gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP] gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP] Length = 962 Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K+V AD + IE R++A +A ++ I AFANG+DI+ T A+ F + + Sbjct: 724 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFANGQDIHQATAAEIFGLSLAE 783 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 784 VTSEQRRSAKAINFGLIY 801 >gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478] Length = 900 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 39/181 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +V++DGR+ T A+ TGR Sbjct: 596 LQHLLAHRDVTRLK---------------VTVDGLLNSVAADGRIHTTFNQTIAA-TGRL 639 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I T + G I D + ++ + +L+ AD Sbjct: 640 SSTEPNLQNIP-------IRT------DAGRQIRD----------AFVVGAGYSELMTAD 676 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 677 YSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLA 736 Query: 441 Y 441 Y Sbjct: 737 Y 737 >gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 957 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 957 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] Length = 917 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 26/148 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +AV+SDGR+ T A+ TGR S QN+P R+E Sbjct: 632 LLKAVASDGRIHSTFNQTVAA-TGRLSSTDPNLQNIPV--RTE----------------- 671 Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 A +R +A G + L+ AD + IE R++A ++ ++ I+AF GED++ Sbjct: 672 -----AGRQIRHAFVAGEGYETLMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVG 726 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 AKAF PID+V+ + R K M L Y Sbjct: 727 AKAFGVPIDEVTPDMRRRVKAMSYGLAY 754 >gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 957 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 957 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFIANKGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 919 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 681 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 741 VTSEQRRSAKAINFGLIY 758 >gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR + G K V AD + IE R++A ++G+ + AFA+G+DI+ T ++ F P+D+ Sbjct: 690 VRQAFVPRKGNKFVAADYSQIELRIMAHLSGDKGLLDAFAHGKDIHKATASEVFGVPLDE 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTTEQRRSAKAINFGLIY 767 >gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 957 Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT] gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT] Length = 910 Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ ++ + AFA GEDI+ T A+ F P D+ Sbjct: 671 IREAFIAPPGASIISADYSQIELRIMAHLSQDEGLLSAFAKGEDIHRATAAEIFGVPRDE 730 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 731 VSSEQRRYAKVINFGLIY 748 >gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 957 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|309784631|ref|ZP_07679266.1| DNA polymerase domain protein [Shigella dysenteriae 1617] gi|308927528|gb|EFP73000.1| DNA polymerase domain protein [Shigella dysenteriae 1617] Length = 66 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 28/44 (63%), Positives = 35/44 (79%) Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF Sbjct: 3 LTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAF 46 >gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309] gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309] Length = 908 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 +++LS V+SDGR+ T A+ TGR + QN+P + Sbjct: 620 VDSLSATVASDGRIHTTFSQVAAA-TGRLASSDPNLQNIPARS----------------- 661 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 AD + +R +A G + L+ AD + IE R++A ++G++ I+AF +GED++ Sbjct: 662 --ADGM-----RIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHR 714 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F TP+ +VS E+R+ K L Y Sbjct: 715 TMASMVFGTPVAEVSAEERSRIKATSYGLAY 745 >gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 957 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212] gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212] Length = 916 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A I+ ++ +KAFA GEDI+ T A+ P+++ Sbjct: 677 IREAFIAPAGYRIISADYSQIELRIMAHISQDEGLLKAFAAGEDIHSATAAEILGIPLNQ 736 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V +EQR KV+ L Y G F +A+ G++ Sbjct: 737 VDQEQRRHAKVINFGLIY--GMSEF-GLATQLGIE 768 >gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184] gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184] Length = 920 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 31/172 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 681 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 740 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ +QR I KV+ L Y G F +AS+ G+ + Q+ ++ Sbjct: 741 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGITRDAAKLYIDRYFARYPGVAQYMEDT 797 Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507 ++T+ + + E LW+ + Q E A+ + GTA +L+K Sbjct: 798 RATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 849 >gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] Length = 889 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 +++LS V+SDGR+ T A+ TGR + QN+P + Sbjct: 601 VDSLSATVASDGRIHTTFSQVAAA-TGRLASSDPNLQNIPARS----------------- 642 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 AD + +R +A G + L+ AD + IE R++A ++G++ I+AF +GED++ Sbjct: 643 --ADGM-----RIRGAFVAGEGFESLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHR 695 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F TP+ +VS E+R+ K L Y Sbjct: 696 TMASMVFGTPVAEVSAEERSRIKATSYGLAY 726 >gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16] gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16] Length = 938 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A I+G++ ++AFANGEDI+ T + F + Sbjct: 699 IREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAFANGEDIHRATAGEIFGVEREA 758 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y G F +A + G++ Sbjct: 759 VSSEQRRYAKVINFGLIY--GMSAFG-LAGNLGIE 790 >gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] Length = 912 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G ++ AD + IE R++A I+G+ I AF+ G+DI+ T A+ F P+++ Sbjct: 673 IREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLIHAFSEGQDIHRATAAEVFGVPVEQ 732 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR KV+ L Y G F +A+ G++ Sbjct: 733 VNPEQRRYAKVINFGLIY--GMSEF-GLATQLGIE 764 >gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893] gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893] Length = 911 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 77/179 (43%), Gaps = 33/179 (18%) Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +LA + L RL ++ KL +TL E + GR+ T + TGR S Sbjct: 596 LQELAHEHTLPRLILEHRSLSKLKSTYTDTLPELIHHRTGRIH-TSYHQAVTATGRLSSS 654 Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R E+ I R +A G KLV AD + Sbjct: 655 EPNLQNIPIRSEQGRRI-------------------------RQAFVAPEGYKLVAADYS 689 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++G+ + AF GEDI+ T A+ F +D VS +QR K + L Y Sbjct: 690 QIELRIMAHLSGDKGLLTAFEKGEDIHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIY 748 >gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640] gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06] Length = 932 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 36/244 (14%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L ++VKL ++ Q + L+ LF GI + + I + Sbjct: 552 LARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 611 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRW 320 + ++ QLA D L ++ ++ KL + L E +S + T + TGR Sbjct: 612 NEDVLEQLAPDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRL 671 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 +G QN+P R+EE VR A G +V AD Sbjct: 672 AGNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPPGSVIVSAD 707 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 708 YSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLI 767 Query: 441 YQGG 444 Y G Sbjct: 768 YGMG 771 >gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970] gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970] Length = 939 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 36/244 (14%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L ++VKL ++ Q + L+ LF GI + + I + Sbjct: 552 LARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 611 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRW 320 + ++ QLA D L ++ ++ KL + L E +S + T + TGR Sbjct: 612 NEDVLEQLAPDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRL 671 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 +G QN+P R+EE VR A G +V AD Sbjct: 672 AGNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPPGSVIVSAD 707 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 708 YSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLI 767 Query: 441 YQGG 444 Y G Sbjct: 768 YGMG 771 >gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] Length = 917 Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 84/172 (48%), Gaps = 31/172 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ +QR I KV+ L Y G F +AS+ G+ + Q+ ++ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGITRDAAKLYIDRYFARYPGVAQYMEDT 794 Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507 ++T+ + + E LW+ + Q E A+ + GTA +L+K Sbjct: 795 RATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 846 >gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163] gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163] Length = 929 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G++ + AFANG DI+ T ++ F +DK Sbjct: 690 IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLLNAFANGLDIHRATASEVFGIALDK 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTSEQRRSAKAINFGLIY 767 >gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827] gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827] Length = 888 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 39/181 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T RL ++ +LK AV+ DGR+ T A+ TGR Sbjct: 584 LQHLLAHRDVT---------RLKTTVDGLLK------AVADDGRIHTTFHQTIAA-TGRL 627 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I T + + G ++ +L+ AD Sbjct: 628 SSTDPNLQNIP-------IRTDEGRRIREG----------------FVVGPGYAELMTAD 664 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G++ I+AF +GED++ +KAF+ P +V+ EQR K M L Sbjct: 665 YSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPTGEVTAEQRRRVKAMSYGLA 724 Query: 441 Y 441 Y Sbjct: 725 Y 725 >gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] Length = 894 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 69/256 (26%), Positives = 112/256 (43%), Gaps = 45/256 (17%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL------RMYLFLITGI 251 G RID+D++ +L E +LD + + ++ Q + L + LF G+ Sbjct: 508 GVRIDVDVLKRLSE-------ELDTRMATVESEAFAAAGQRFNLNSPKQIQTILFDKMGL 560 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSS-----DGRL 305 ++ + G S + + +LAK L RL + KL NT ++A+ GR+ Sbjct: 561 PVLKKTPGGQPST-NEDVLAELAKQADLPRLILDYRGLAKLKNTYADALPQMIQERTGRV 619 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P RS+ L R +R Sbjct: 620 H-THYHQAVAATGRLSSSDPNLQNIP--VRSD---------LGR-------------RIR 654 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G L+ AD + IE R++A ++G+ +AFA G DI+ T A+ F P+++V+ Sbjct: 655 QAFVAEPGHLLISADYSQIELRIMAHLSGDAGLRQAFARGLDIHRATAAEVFAIPLEQVT 714 Query: 426 KEQRAIGKVMELALGY 441 EQR K + L Y Sbjct: 715 PEQRRAAKAINFGLIY 730 >gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 896 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 86/323 (26%), Positives = 134/323 (41%), Gaps = 48/323 (14%) Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN-----------DRGYRIDLDLVLKL 209 EYC DV+ T L K ++ ERDL L I RG +D+ + +L Sbjct: 466 EYCCEDVDFTCRL-KEVLEKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQL 524 Query: 210 QELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSI 264 + + QE K L E I + + + S +Q L LF+ GI + T + Sbjct: 525 SKELTQELKTLQESIYTMAGEEFNLNSPKQVSEL---LFIKLGIPAPKKTATGHSTSAEV 581 Query: 265 LSH-SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 L N LA ++ RL + S+ + R+ T + TGR S Sbjct: 582 LEFLKNDYPLAGKILEYRLLEKLRSTYVDALPSQVIPRTHRIHSTFN-QSVAATGRLSSQ 640 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R+EE + I+ R E G + AD + Sbjct: 641 DPNLQNIPI--RTEE--GRKIRGAFRPE-------------------KEGWSFLSADYSQ 677 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R+LA ++ + + AF N EDI+ T A F P+++VSKEQR K + + Y Sbjct: 678 IELRLLAHLSQDPVLMAAFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGIIY-- 735 Query: 444 GAKVFKTMASHCGLDLQQFSQNV 466 G + F +A G++++Q S+ + Sbjct: 736 GQQAF-GLARELGIEVKQASKFI 757 >gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 939 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 103/244 (42%), Gaps = 36/244 (14%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L ++VKL ++ Q + L+ LF GI + + I + Sbjct: 552 LARQSAELGAELVKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 611 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRW 320 + ++ QLA D L ++ ++ KL + L E +S + T + TGR Sbjct: 612 NEDVLEQLAPDYPLPKIILKNRSLAKLKSTYTDKLPEMISPRDKRVHTTYAQAVAITGRL 671 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 +G QN+P R+EE VR A G +V AD Sbjct: 672 AGNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPPGSVIVSAD 707 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 708 YSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLI 767 Query: 441 YQGG 444 Y G Sbjct: 768 YGMG 771 >gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] Length = 953 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 30/184 (16%) Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 TL+ + +H +A L RL+ S + + L E ++ GR+ + GA TG Sbjct: 627 TLEDLQTHDQSGIVAMILRYRRLSKLKSTYV--DALIELINQQTGRVHTQYRQIGAE-TG 683 Query: 319 RWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 R S QN+P R E EI R +A G L+ Sbjct: 684 RLSSDSPNLQNIPVRSEEGREI-------------------------RRAFVARPGHVLM 718 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA I + ++ F G+DI+ T A+ F+ P+D+VSK QR I K+ Sbjct: 719 TADYSQIELRVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTVF 778 Query: 438 ALGY 441 + Y Sbjct: 779 GIIY 782 >gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015] gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015] Length = 900 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ AD + IE R++A ++G++ I+AF G DI+ T ++ F P+D+ Sbjct: 661 IREAFVAEPGHKILAADYSQIELRIMAHLSGDETLIRAFKEGRDIHQATASEVFGVPLDE 720 Query: 424 VSKEQRAIGKVMELALGY 441 V EQR K + L Y Sbjct: 721 VESEQRRRAKAVNFGLIY 738 >gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 937 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G ++ AD + IE R++A I+ + +KAFA G D++ T ++ FN P+ + Sbjct: 698 VREAFIAPPGHVILSADYSQIELRIMAHISEDPGLLKAFAEGLDVHRATASEVFNVPVAE 757 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y GA +AS+ G++ Sbjct: 758 VSSEQRRYAKVINFGLIYGMGA---FGLASNLGIE 789 >gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656] gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656] Length = 903 Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 LS ++SDG++ TL + TGR S QN+P I Sbjct: 620 LSGYIASDGKIHTTLN-QTITATGRLSSTEPNLQNIP---------------------IR 657 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 LG +R + G V +D + IE RVLA ++G++ I+AF NG+DI+ +T + Sbjct: 658 IELG---KLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTAS 714 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 F+TP D+V+ QR K + + Y Sbjct: 715 LVFDTPFDEVTDLQRRNAKAVNFGIVY 741 >gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383] gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383] Length = 917 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 678 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGI 768 >gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629] gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1] Length = 903 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 LS ++SDG++ TL + TGR S QN+P I Sbjct: 620 LSGYIASDGKIHTTLN-QTITATGRLSSTEPNLQNIP---------------------IR 657 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 LG +R + G V +D + IE RVLA ++G++ I+AF NG+DI+ +T + Sbjct: 658 IELG---KLIRKVFLPEEGDLFVDSDYSQIELRVLAALSGDERMIEAFKNGQDIHRSTAS 714 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 F+TP D+V+ QR K + + Y Sbjct: 715 LVFDTPFDEVTDLQRRNAKAVNFGIVY 741 >gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 933 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ AD + IE R++A ++ + I AFA G+DI+ +T A+ F P+++ Sbjct: 695 IRQAFIARDGYKIIAADYSQIELRIMAHLSNDQGLINAFAQGKDIHRSTAAEIFGLPLEQ 754 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 755 VTSEQRRNAKAINFGLIY 772 >gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 942 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I + G KL+ AD + IE R++A IA ++ + AF +G+D++ T A+ F P+D Sbjct: 703 IREAFIPAEGCKLLSADYSQIELRIMAHIAEDENLLTAFRDGKDVHQATAAEIFGVPLDD 762 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y G F +A + G++ Sbjct: 763 VSSEQRRYAKVINFGLIY--GMSAF-GLAGNLGIE 794 >gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] Length = 905 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G +++ AD + IE R++A I+ + +KAFA GEDI+ T ++ F P++ Sbjct: 666 IREAFIAPSGYRIISADYSQIELRIMAHISQDAGLLKAFAQGEDIHRATGSEIFGVPLET 725 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR K++ L Y G F +A+ G++ Sbjct: 726 VNSEQRRYAKIINFGLIY--GMSEFG-LATQLGIE 757 >gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49] Length = 641 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 402 IREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 461 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 462 VNADQRRIAKVINFGLIY--GMSAFG-LASNLGI 492 >gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6] gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6] Length = 934 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 48/82 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A+ G KLV AD + IE R++A I+G+ +KAFA+G D++ T A+ FN Sbjct: 695 VREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLKAFADGMDVHRATAAEVFNIAAAD 754 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ EQR K + L Y GA Sbjct: 755 VTSEQRRYAKTINFGLIYGMGA 776 >gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] Length = 908 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L AV+SDGR+ T A+ TGR Sbjct: 604 LQHLLAHRDATRLK---------------VTVDGLLNAVASDGRIHTTFNQTIAA-TGRL 647 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A +R + +G +L+ A Sbjct: 648 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYGELMTA 683 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF+ PID+V+ E R K M L Sbjct: 684 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGL 743 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ E + Sbjct: 744 AY--------------GLSAYGLSQQLK-ISTEEAKEQMEQY 770 >gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1] gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1] Length = 908 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 62/222 (27%), Positives = 97/222 (43%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L AV+SDGR+ T A+ TGR Sbjct: 604 LQHLLAHRDATRLK---------------VTVDGLLNAVASDGRIHTTFNQTIAA-TGRL 647 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A +R + +G +L+ A Sbjct: 648 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYGELMTA 683 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF+ PID+V+ E R K M L Sbjct: 684 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGL 743 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ E + Sbjct: 744 AY--------------GLSAYGLSQQLK-ISTEEAKEQMEQY 770 >gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 927 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 31/177 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G+ + AD + IE R++A ++G+D ++AF G D++ T A+ F +D+ Sbjct: 688 VREAFVAPPGRVIASADYSQIELRIMAHLSGDDALLRAFTEGLDVHRATAAEVFGVAVDQ 747 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTSTFEDWE 476 VS EQR KV+ L Y G F +A + G+D + ++ Q + D Sbjct: 748 VSSEQRRYAKVINFGLIY--GMSSFG-LARNLGIDNKAAAAYIDRYFQRYPGVKQYMDET 804 Query: 477 QAES------HHLWMQDQY-PEF--------------AVKDKLIGTACELVKKAWRA 512 +A + ++ + Y PE A+ + GTA +L+KKA A Sbjct: 805 KASAKARGYVETVFGRRLYLPEINSPNGPRRGAAERAAINAPMQGTAADLIKKAMVA 861 >gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] Length = 891 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 33/160 (20%) Query: 289 ILKLN-TLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341 I+KLN T E +++ DGR+ T + TGR S QN+P R E + Sbjct: 596 IVKLNSTYVEGLTALINPIDGRIHSTFN-QTITTTGRISSTEPNLQNIPVRMEIGRRL-- 652 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 R+ ++ + K+LV AD + +E RVLA ++G+ I A Sbjct: 653 -----------------------RAVFVSDDEKRLVDADYSQVELRVLAHMSGDQNMIDA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F +GEDI+ T ++ FN P+++V+ E R+ K + + Y Sbjct: 690 FKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIY 729 >gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1] gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1] Length = 927 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G+ + AD + IE R++A ++G+D ++AF G D++ T A+ F +D+ Sbjct: 688 VREAFVAPPGRVIASADYSQIELRIMAHLSGDDALLRAFTEGLDVHRATAAEVFGVAVDQ 747 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y G F +A + G+D Sbjct: 748 VSSEQRRYAKVINFGLIY--GMSSFG-LARNLGID 779 >gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922] gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922] Length = 941 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 10/134 (7%) Query: 331 PRQERSEEILTQTIQALNRGETIADPL------GLASDCVRSCIIASNGK-KLVVADLAG 383 P +R QT+ A R ++ L +R IA N + K++ AD + Sbjct: 663 PVTQRVHTTFAQTVAATGRLSSVNPNLQNIPIRTEEGQQIRKAFIARNPEYKIISADYSQ 722 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A +A + +KAF +GEDI+ +T AK F +D+V++EQR+ K + + Y Sbjct: 723 IELRLIAQMAQDPVMVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIY-- 780 Query: 444 GAKVFKTMASHCGL 457 G F +A GL Sbjct: 781 GVSAF-GLAQQTGL 793 >gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400] gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400] Length = 913 Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A I+G++ + +F+ GEDI+ T A+ F+ + Sbjct: 674 IREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQGEDIHRATAAEIFSVTPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR + KV+ L Y G F +AS+ G+ Sbjct: 734 VSNDQRRVAKVINFGLIY--GMSSFG-LASNLGI 764 >gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1] gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1] Length = 919 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 30/177 (16%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA++ L RL ++ KL + L E + GR+ T + TGR S Sbjct: 606 LQELAENYELPRLIMEHRSLAKLKSTYTDKLPEMIQHTGRIH-TSYHQAVTATGRLSSTD 664 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P I TQ G I R +A G KLV AD + I Sbjct: 665 PNLQNIP-------IRTQ------EGRRI-----------RQAFVAPEGHKLVAADYSQI 700 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 E R++A ++ + + AFA+ ED++ T A+ F +D V+ EQR K + L Y Sbjct: 701 ELRIMAHLSQDKGLLDAFAHDEDVHKATAAEVFEVAVDDVTAEQRRRAKAINFGLIY 757 >gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013] Length = 983 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 596 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 655 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 656 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 714 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+EE VR A G +V A Sbjct: 715 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 750 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 751 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 810 Query: 440 GYQGG 444 Y G Sbjct: 811 IYGMG 815 >gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700] gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700] Length = 985 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ AD + IE R++A ++ + I AFA G+DI+ +T A+ F P+++ Sbjct: 747 IRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLINAFAQGKDIHRSTAAELFGLPLEQ 806 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 807 VTSEQRRNAKAINFGLIY 824 >gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] Length = 950 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ AD + IE R++A ++ + I AFA G+DI+ +T A+ F P+++ Sbjct: 712 IRQAFIARDGYKIIAADYSQIELRIMAHLSNDAGLINAFAQGKDIHRSTAAEIFGLPLEQ 771 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 772 VTSEQRRNAKAINFGLIY 789 >gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76] gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385] Length = 983 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 596 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 655 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 656 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 714 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+EE VR A G +V A Sbjct: 715 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 750 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 751 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 810 Query: 440 GYQGG 444 Y G Sbjct: 811 IYGMG 815 >gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] Length = 874 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/177 (31%), Positives = 80/177 (45%), Gaps = 28/177 (15%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L + V DGR+R T Q +RTGR S QN+P R+EE Sbjct: 588 VDGLLKVVGPDGRVRSTFQ-QTETRTGRISSTEPNLQNIPI--RTEE------------- 631 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R A G KLV AD + IE RVLA +A + I AF +GEDI+ T Sbjct: 632 ---------GSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQSGEDIHAT 682 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 T A+ F P V+ R+ K + + Y GA +++ G+ + + +KS Sbjct: 683 TAAQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGA---FSLSQDIGVTVSEADSYIKS 736 >gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] Length = 942 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 77/303 (25%), Positives = 130/303 (42%), Gaps = 55/303 (18%) Query: 153 VQAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 +Q QLFG + T ELFK + IPL D+ L G +D + KL Sbjct: 519 LQLAQLFGPELRE--AQTEELFKEIEIPLLRVLADMEL-------EGINLDTGFLEKLS- 568 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSH 267 +L++DI L I ++ + + + ++ L + LVD + T S Sbjct: 569 ------GELEKDIEGLVGKIYEAAGEEFNIGSPKQLGEILFDKMKLVDKPKKTRTGQYST 622 Query: 268 SN--ITQLAKDLILNRLASSGSAILKLNTL------SEAVSSDGRLRGTLQFYGASRTGR 319 + ++ LAK+ + ++ + KL + + S GR+ T + TGR Sbjct: 623 AEDVLSGLAKEHEIVQMVLDYRGLTKLKSTYVDALPQQVAPSTGRVH-TDYMQTVAATGR 681 Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 S QN+P R ER +I ++ I S +L+ Sbjct: 682 LSSNNPNLQNIPIRTERGRQIR------------------------KAFIPRSPEYQLLA 717 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ ED I++F GEDI+ T A+ F P+++V++EQR+ K + Sbjct: 718 ADYSQIELRIIAALSEEDTMIESFKRGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFG 777 Query: 439 LGY 441 + Y Sbjct: 778 IIY 780 >gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093] gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093] Length = 867 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G L+VAD + IE R+LA I GE+ ++ F GEDI+ T A+ F P + Sbjct: 630 IRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGEDIHRRTAAQIFGVPPEA 689 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R + KV+ + Y Sbjct: 690 VTPEGRRVAKVINFGVLY 707 >gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44] gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44] Length = 937 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A GK + AD + IE R++A ++G++ + AF NG D++ T A+ F +D+ Sbjct: 698 VREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDE 757 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 758 VSSEQRRYAKVINFGLIY 775 >gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103] gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103] Length = 928 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 25/174 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G ++V AD + IE R++A ++ + + AF+ GEDI+ T ++ F P+ K Sbjct: 688 IRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSK 747 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y G AK + + + ++ +N + Sbjct: 748 VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQL 807 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512 + + E + LW+ D A++ K + GTA +++K+A A Sbjct: 808 AASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861 >gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/181 (31%), Positives = 85/181 (46%), Gaps = 36/181 (19%) Query: 270 ITQLAKD--LILNRLASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSG 322 ++ LAKD +I N L G A LK +T +A+ S GR+ T + TGR S Sbjct: 638 LSVLAKDHEIIRNILEYRGLAKLK-STYVDALPLQVEESTGRVH-TDYMQTVAATGRLSS 695 Query: 323 CVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVAD 380 QN+P R ER + VR I N L+ AD Sbjct: 696 NNPNLQNIPIRTERGRQ-------------------------VRKAFIPRNDDYTLLAAD 730 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ E+ I+AF NGEDI+ +T +K F PI++V++ QR+ K + + Sbjct: 731 YSQIELRIIAALSKEETMIEAFKNGEDIHASTASKVFGVPIEEVTRAQRSNAKTVNFGII 790 Query: 441 Y 441 Y Sbjct: 791 Y 791 >gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196] Length = 938 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+EE VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765 Query: 440 GYQGG 444 Y G Sbjct: 766 IYGMG 770 >gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355] Length = 928 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 25/174 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G ++V AD + IE R++A ++ + + AF+ GEDI+ T ++ F P+ K Sbjct: 688 IRQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSK 747 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y G AK + + + ++ +N + Sbjct: 748 VTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQL 807 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512 + + E + LW+ D A++ K + GTA +++K+A A Sbjct: 808 AASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861 >gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76] Length = 916 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 529 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 588 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 589 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 647 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+EE VR A G +V A Sbjct: 648 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 683 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 684 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 743 Query: 440 GYQGG 444 Y G Sbjct: 744 IYGMG 748 >gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2] gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2] Length = 931 Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A GK + AD + IE R++A ++G++ + AF NG D++ T A+ F +D+ Sbjct: 692 VREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDE 751 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 752 VSSEQRRYAKVINFGLIY 769 >gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688] gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688] Length = 918 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 4/102 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++ +D + AFA GEDI+ T A+ F D Sbjct: 679 IREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAAGEDIHRATAAEIFGVERDA 738 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 VS EQR KV+ L Y G F +A + G++ +Q +QN Sbjct: 739 VSSEQRRYAKVINFGLIY--GMSAFG-LAQNLGIE-RQAAQN 776 >gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047] gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047] Length = 610 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 372 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 431 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y + A+ + + +QQF ++++ Sbjct: 432 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAK 491 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + E L++ D A++ K + GTA +++K+A Sbjct: 492 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 543 >gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE] gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE] Length = 930 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD--------------LQQFSQNVKST 469 V+ EQR K + L Y A LD +QQF ++++ Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRLDAQKYMDLYFQRYPSVQQFMTDIRAK 811 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + E L++ D A++ K + GTA +++K+A Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4] gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4] Length = 918 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/102 (37%), Positives = 57/102 (55%), Gaps = 4/102 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++ +D + AFA GEDI+ T A+ F D Sbjct: 679 IREAFVAPAGGHIVSADYSQIELRIMAHLSQDDGLLTAFAAGEDIHRATAAEIFGVERDA 738 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 VS EQR KV+ L Y G F +A + G++ +Q +QN Sbjct: 739 VSSEQRRYAKVINFGLIY--GMSAFG-LAQNLGIE-RQAAQN 776 >gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315] gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315] Length = 917 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 31/172 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 678 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ +QR I KV+ L Y G F +AS+ G+ + Q+ ++ Sbjct: 738 VNSDQRRIAKVINFGLIY--GMSAFG-LASNLGITRDAAKLYIDRYFARYPGVAQYMEDT 794 Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507 ++T+ + + E LW+ + Q E A+ + GTA +L+K Sbjct: 795 RATAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 846 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 41/182 (22%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L ++V++DGR+ T A+ TGR Sbjct: 598 LEHLLTHRDVTRLK---------------VTVDGLLKSVAADGRIHTTFNQTIAA-TGRL 641 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R E EI ++ + ++L+ Sbjct: 642 SSTEPNLQNIPVRTEAGREIRD------------------------GFVVGAGYRELMTV 677 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ A+AF PID+V+ E R K M L Sbjct: 678 DYSQIEMRIMAHLSADEGLIEAFNTGEDLHSFVAARAFGVPIDEVTAELRRRVKAMSYGL 737 Query: 440 GY 441 Y Sbjct: 738 AY 739 >gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1] gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1] Length = 937 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A GK + AD + IE R++A ++G++ + AF NG D++ T A+ F +D+ Sbjct: 698 VREAFVAPEGKLIASADYSQIELRIMAHLSGDEALLSAFKNGLDVHRATAAEVFGVSVDE 757 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 758 VSSEQRRYAKVINFGLIY 775 >gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 314 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 76 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 135 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 136 VTSEQRRNAKAINFGLIY--GMSAF-GLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 192 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 ++ + + + E L++ D A++ K + GTA +++K+A Sbjct: 193 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 247 >gi|254253595|ref|ZP_04946912.1| DNA polymerase A [Burkholderia dolosa AUO158] gi|124898240|gb|EAY70083.1| DNA polymerase A [Burkholderia dolosa AUO158] Length = 248 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 84/172 (48%), Gaps = 31/172 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 9 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 68 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ +QR I KV+ L Y G F +AS+ G+ + Q+ +N Sbjct: 69 VNADQRRIAKVINFGLIY--GMSAF-GLASNLGITRDAAKLYIDRYFTRYPGVAQYMENT 125 Query: 467 KSTSTFEDW-EQAESHHLWMQD---------QYPE-FAVKDKLIGTACELVK 507 ++++ + + E LW+ + Q E A+ + GTA +L+K Sbjct: 126 RASAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQGTAADLIK 177 >gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 929 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ + AFANG DI+ T ++ F +DK Sbjct: 690 IRQAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDK 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTSEQRRSAKAINFGLIY 767 >gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58] gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58] Length = 878 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 81/348 (23%), Positives = 146/348 (41%), Gaps = 62/348 (17%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITG 250 ++ G +D ++ L+ + Q+ L E+I L I+S +Q L L+ G Sbjct: 494 SMERNGMPLDSKKLVSLEHSLEQDLAILTEEIYTLAGEPFNIKSPKQ---LANILYNKLG 550 Query: 251 IDLVDMSEGTLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 I +D ++ T +L H I +L L +L S+ L + R+ Sbjct: 551 ITPLDKAKSTRAEVLEALREEHKIIEKLLMFRALEKLLSTYVKALP----RQVAPQTQRI 606 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + G + TGR + QN+P++ +RG ++ + + + V Sbjct: 607 HATFEQMGTA-TGRLACRDPNLQNIPKRS-------------SRGLSLREAFLVPCETV- 651 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 + AD + IE R+LA ++ ++ + AF GEDI+ T ++ F+ P+D+V+ Sbjct: 652 ---------SFLAADYSQIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVT 702 Query: 426 KEQRAIGKVMELALGY----QGGAKVFKTMASHCGLDLQQFSQNVKSTSTF-EDWEQAES 480 K+QR K + + Y G +K+ K S +Q + + + F E+ A S Sbjct: 703 KQQRMYAKTVNFGIIYGQQAYGLSKILKIPLSEAQELIQAYFERYSGVARFVEETIAAAS 762 Query: 481 HHLWMQ------------DQYP-------EFAVKDKLIGTACELVKKA 509 H L + D++P AV ++ G+A EL+K A Sbjct: 763 HDLKVTTMLGRERVIDNWDEHPGIRASSGRLAVNTRIQGSAAELIKCA 810 >gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 930 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIARKGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y + A+ + + +QQF ++++ Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAK 811 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + E L++ D A++ K + GTA +++K+A Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] Length = 930 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLISAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y + A+ + + +QQF ++++ Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAK 811 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + E L++ D A++ K + GTA +++K+A Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031] gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031] Length = 935 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 697 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 756 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y + A+ + + +QQF ++++ Sbjct: 757 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIRAK 816 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + E L++ D A++ K + GTA +++K+A Sbjct: 817 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 868 >gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661] gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661] Length = 928 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 84/303 (27%), Positives = 131/303 (43%), Gaps = 46/303 (15%) Query: 146 DCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 D T H++ W +L E ++V E+ L +S ER+ L+DQ I + + Sbjct: 502 DVTLQLHLKMWPELEKEQGPKEVFENIEM-PLLTVISRIERNGVLIDQGILAAHSK---E 557 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 L ++L EL Q+ +L + L+ S +Q L+ LF GI + G S Sbjct: 558 LTIRLAEL-EQKAHELAGEPFNLS-----SPKQ---LQTILFEKQGIKPTKKTPGGAPST 608 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTG 318 S + +LA D L ++ + KL +T ++ + GR+ T + TG Sbjct: 609 -SEEVLAELALDYPLPKVILENRGLAKLKSTYTDKLPLMINPITGRVH-TSYHQAVTATG 666 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P R+EE +R IAS G K+V Sbjct: 667 RLSSTDPNLQNIPV--RNEE----------------------GRRIRQAFIASKGHKIVA 702 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ + + AFA G DI+ T A+ F +DKV+ EQR K + Sbjct: 703 ADYSQIELRIMAHLSQDKGLLSAFAEGMDIHRATAAEVFGMALDKVTGEQRRSAKAINFG 762 Query: 439 LGY 441 L Y Sbjct: 763 LIY 765 >gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 35/187 (18%) Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341 A KLN+ L + + DGR+ T A RTGR S QN+P R E ++ Sbjct: 569 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRTELGSQL-- 625 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 R+ IA G LV AD + IE R+LA I G++ +A Sbjct: 626 -----------------------RAYFIAKPGCVLVDADYSQIELRILAHITGDEHMQQA 662 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F NGEDI+ +T AK + P ++V+ R+ K + + Y GA ++A G+ +++ Sbjct: 663 FLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGIMYGKGA---YSLAKDIGVSVKE 719 Query: 462 FSQNVKS 468 +K+ Sbjct: 720 ADAFLKN 726 >gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846] Length = 930 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIAHEGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 752 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 808 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 ++ + + + E L++ D A++ K + GTA +++K+A Sbjct: 809 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] Length = 954 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G ++ AD + IE R++A +A + IKAFA G+DI+ +T A+ F P++ Sbjct: 716 IRQAFIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEA 775 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 776 VTSEQRRSAKAINFGLIY 793 >gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA] gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA] Length = 935 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 697 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 756 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 757 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 813 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 ++ + + + E L++ D A++ K + GTA +++K+A Sbjct: 814 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 868 >gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264] gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264] gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264] Length = 926 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 687 IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777 >gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4] Length = 926 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 687 IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777 >gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985] gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985] Length = 903 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 32/176 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H ++ L + RL ++ ++K AV DGR+ T + + TGR S Sbjct: 596 HPFLSHLLEHRDATRLMTTAQGLIK------AVGPDGRIHTTFR-QDVAATGRLSSTDPN 648 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIE 385 QN+P R+EE + +R + G + L+ AD + IE Sbjct: 649 LQNIPV--RTEE----------------------ARRIRGVFVVGEGHEALMTADYSQIE 684 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A ++G++ I+AF GED++ ++AF PID+V E R K M L Y Sbjct: 685 MRIMAHLSGDEGLIEAFRTGEDLHNFVASRAFGVPIDQVGAELRRRVKAMSYGLAY 740 >gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13] gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13] Length = 933 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ ++ +KAFA G+DI+ T A+ F +DK Sbjct: 693 IRQAFIAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFAEGKDIHRATAAEVFGVQLDK 752 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 753 VTGEQRRSAKAINFGLIY 770 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 130/301 (43%), Gaps = 49/301 (16%) Query: 161 EYCKRDVEATRELFKRLIP--LSDGERDLW------LLD--QTINDRGYRIDLDLVLKLQ 210 EY D + T +L + P S G L+ LLD + G +D D + L Sbjct: 513 EYAVEDADITLQLKEHFTPELASAGTDKLFKDIEMPLLDVLAAMEIEGINLDEDFLSSLS 572 Query: 211 ELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + + +L++DI ++ + I S +Q + + L + LVD + T S + Sbjct: 573 GDLETDITQLEKDIYEVAGEEFNIGSPKQ-----LGVILFEKLKLVDKPKKTKTGQYSTA 627 Query: 269 N--ITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 ++ LAKD +I N L G + LK ++ L V + + T + TGR S Sbjct: 628 EDVLSYLAKDHAIIQNVLDYRGLSKLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLS 687 Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 QN+P R ER ++ ++ I L+ AD Sbjct: 688 STDPNLQNIPIRTERGRQVR------------------------KAFIPRDENYTLIAAD 723 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ E+ I AF +GEDI+ +T AK FN ++ V++EQR+ K + + Sbjct: 724 YSQIELRIIAALSEEENMIAAFQSGEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGII 783 Query: 441 Y 441 Y Sbjct: 784 Y 784 >gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519] gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii] Length = 888 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A LV AD + IE R+LA IA ++ I AF+ G+DI+ T ++ FN P+D+ Sbjct: 649 LRKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDAFSKGDDIHTITASEVFNVPLDE 708 Query: 424 VSKEQRAIGKVMELALGY 441 V+KE R+ K + + Y Sbjct: 709 VTKELRSAAKAVNFGIVY 726 >gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43] Length = 926 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 687 IREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777 >gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165] gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165] Length = 954 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G ++ AD + IE R++A +A + IKAFA G+DI+ +T A+ F P++ Sbjct: 716 IRQAFIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEGKDIHRSTAAEIFGVPLEA 775 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 776 VTSEQRRSAKAINFGLIY 793 >gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1] gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1] Length = 888 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 48/83 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+C A G +LV AD + IE RVLA ++GE + AFA+G DI+ T A F+ P + Sbjct: 649 MRACFTAGPGNRLVAADYSQIELRVLAHLSGESALLDAFAHGADIHARTAAILFDKPEEA 708 Query: 424 VSKEQRAIGKVMELALGYQGGAK 446 ++ ++R K + L Y G + Sbjct: 709 IAPDERRQAKTINFGLLYGMGPQ 731 >gi|313813473|gb|EFS51187.1| hypothetical protein HMPREF9587_01282 [Propionibacterium acnes HL025PA1] Length = 112 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 11/109 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET SP PL K GV+ YAE L Y+ D PV++ D +P ++L Sbjct: 1 MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------KRWICTSV 98 L D V+ AHN+ FER+ L P +W CT V Sbjct: 61 AALVDPGVVKWAHNAAFERVALSAWLQRHYPELLAAGFLDPSQWRCTMV 109 >gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146] gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146] Length = 930 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++G+ ++AFA G+DI+ T A+ F P++ Sbjct: 691 IRQAFIAPVGSRIVAADYSQIELRIMAHLSGDKGLLQAFAAGKDIHRATAAEVFGLPLEA 750 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 751 VSADQRRSAKAINFGLIY 768 >gi|307249709|ref|ZP_07531688.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858217|gb|EFM90294.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 180 Score = 62.4 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 31/78 (39%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 11 IRQAFIARDGYKIVAADYSQIELRIMAHLANDEGMITAFAEGKDIHRATAAEIFGLALDQ 70 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 71 VTSEQRRSAKAINFGLIY 88 >gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] Length = 907 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 42/207 (20%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L AV++DGR+ T A+ TGR Sbjct: 600 LQHLLTHRDVTRLK---------------VTVDGLLNAVAADGRIHTTFNQTIAT-TGRL 643 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P + N G I D + S+ +NG +L+ A Sbjct: 644 SSTEPNLQNIPIRT-------------NAGRQIRDAFVVGSE--------NNGYTELMTA 682 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF PI+ ++ E R K M L Sbjct: 683 DYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGL 742 Query: 440 GY----QGGAKVFKTMASHCGLDLQQF 462 Y G A K L ++Q+ Sbjct: 743 AYGLSAYGLATQLKISTEEAKLQMEQY 769 >gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1] gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1] Length = 920 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 681 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 740 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 741 VNADQRRIAKVINFGLIY--GMSAFG-LASNLGI 771 >gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] Length = 917 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 678 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 738 VNADQRRIAKVINFGLIY--GMSAFG-LASNLGI 768 >gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1] gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1] Length = 930 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 31/175 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 752 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 808 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 ++ + + + E L++ D A++ K + GTA +++K+A Sbjct: 809 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] Length = 930 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++G+ ++AFA G+DI+ T A+ F P++ Sbjct: 691 IRQAFIAPAGSKIVAADYSQIELRIMAHLSGDRGLLEAFAAGKDIHRATAAEVFGLPLEA 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 751 VTADQRRSAKAINFGLIY 768 >gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320] gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320] Length = 932 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K+V AD + IE R++A ++ + + AFA G+DI+ T ++ F P+D+ Sbjct: 692 IRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLDE 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTSEQRRSAKAINFGLIY 769 >gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152] gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152] Length = 910 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 39/181 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L ++V+ DGR+ T A+ TGR Sbjct: 606 LEHLLAHRDATRLK---------------VTVDGLLKSVADDGRIHTTFNQTIAA-TGRL 649 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I T T G I D + ++ +L+ AD Sbjct: 650 SSTEPNLQNIP-------IRTDT------GRMIRD----------TFVVGPGYAELMTAD 686 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G++ I+AF +GED++ +KAF+ PI +VS E R K M L Sbjct: 687 YSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYGLA 746 Query: 441 Y 441 Y Sbjct: 747 Y 747 >gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 943 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I ++G KL+ AD + IE R++A IA ++ + AF G+D++ T A+ F P+D Sbjct: 704 IREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLTAFKEGKDVHQATAAEIFGIPLDD 763 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR KV+ L Y G F +A + G++ Sbjct: 764 VNSEQRRYAKVINFGLIY--GMSAF-GLAGNLGIE 795 >gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M] gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M] Length = 920 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G ++V AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F + Sbjct: 681 IREAFIAAPGHRIVSADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLE 740 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 741 VNADQRRIAKVINFGLIY--GMSAF-GLASNLGI 771 >gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223] gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223] Length = 921 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D+ Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 741 VTTEQRRRAKAVNFGLIY 758 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 75/309 (24%), Positives = 129/309 (41%), Gaps = 57/309 (18%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLV 206 +L EY D + T +L +PL + ++ L L + + G R+D Sbjct: 492 ELQKEYAVEDTDVTLQLKHVFLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVD---- 547 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGT 260 +AQ K++ D++ L I + +++ L LF + T Sbjct: 548 ---THFLAQLSKEIAADLIGLEKTIFSQAEESFNLSSPKQLGDILFEKLKLLSKPKKTKT 604 Query: 261 LKSILSHSNITQLA--KDLILNRLASSGSAILKL-NTLSEAVSSD-----GRLRGTLQFY 312 + S +++LA +++ N L A+ KL +T EA+ + GR+ T Sbjct: 605 GQYATSEEVLSELASKHEIVANVL--EFRALQKLQSTYIEALPREVNPHTGRIHTTF-MQ 661 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P I P G S ++ + + Sbjct: 662 AVTATGRLSSNQPNLQNIP---------------------IRTPRG--SQIRKAFVPRNE 698 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 L+ AD + IE R++A ++ ED I+AF G+DI+ +T AK F P++ V+KEQR+ Sbjct: 699 DYTLLSADYSQIELRIIAALSEEDHMIEAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHA 758 Query: 433 KVMELALGY 441 K + + Y Sbjct: 759 KTVNFGIIY 767 >gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155] gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155] Length = 921 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D+ Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 741 VTTEQRRRAKAVNFGLIY 758 >gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195] gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195] gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678] Length = 921 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D+ Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 741 VTTEQRRRAKAVNFGLIY 758 >gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58] gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58] Length = 938 Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 105/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+EE VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTEE----------------------GRKVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGL 765 Query: 440 GYQGG 444 Y G Sbjct: 766 IYGMG 770 >gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185] gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185] Length = 935 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D+ Sbjct: 695 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 754 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 755 VTTEQRRRAKAVNFGLIY 772 >gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183] gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175] gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183] gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175] Length = 921 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D+ Sbjct: 681 IRQAFIAPDGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDE 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 741 VTTEQRRRAKAVNFGLIY 758 >gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN] gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923] gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae] gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae] gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923] Length = 911 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 42/207 (20%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L AV++DGR+ T A+ TGR Sbjct: 604 LQHLLTHRDVTRLK---------------VTVDGLLNAVAADGRIHTTFNQTIAT-TGRL 647 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P + N G I D + S+ +NG +L+ A Sbjct: 648 SSTEPNLQNIPIRT-------------NAGRQIRDAFVVGSE--------NNGYTELMTA 686 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF PI+ ++ E R K M L Sbjct: 687 DYSQIEMRIMAHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGL 746 Query: 440 GY----QGGAKVFKTMASHCGLDLQQF 462 Y G A K L ++Q+ Sbjct: 747 AYGLSAYGLATQLKISTEEAKLQMEQY 773 >gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] Length = 928 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G K+V AD + IE R++A ++ ++ +KAF+ G+DI+ T A+ FN + + Sbjct: 688 VRQAFIARPGYKIVAADYSQIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVFNVSLTE 747 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 748 VTTEQRRNAKAINFGLIY 765 >gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909] gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909] Length = 932 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F TP++K Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGTPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTTEQRRSAKAINFGLIY 769 >gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127] gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127] Length = 930 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 80/172 (46%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y + A+ + + +QQF +++ Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADAQKYMNLYFQRYPSVQQFMTDIREK 811 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + E L++ D A++ K + GTA +++K+A Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1] gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1] Length = 947 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 74/293 (25%), Positives = 129/293 (44%), Gaps = 37/293 (12%) Query: 162 YCKRDVEATRELFKRLIP---LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 Y D + T ++ + L P +DG R ++ L+ ++ +RI+ + VL +A++ Sbjct: 517 YACEDADQTLDVHRVLWPQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSN 576 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSILSHSNITQ 272 L + IV+L + Q + L F G+ +V + +S + + Sbjct: 577 DLGQRIVQLEQEAYDIAGQPFNLASPKQLGEIFFDKLGMPVVKKTATGARST-DEEVLEK 635 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT----LQFYGASRTGRWSGCVFQPQ 328 LA+D L + +L+ +LS +L+GT L RTGR Q Sbjct: 636 LAEDYPLP------AKLLEHRSLS-------KLKGTYTDKLAQLALPRTGRVHTHYAQAV 682 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + S + Q I I P G VR IA+ G + AD + IE R+ Sbjct: 683 AVTGRLSSNDPNLQNI-------PIRTPEGRR---VREAFIAAPGHVIASADYSQIELRI 732 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +A ++G++ ++AF G D++ T ++ FN +++VS EQR KV+ L Y Sbjct: 733 MAHLSGDESLLRAFHEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIY 785 >gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60] Length = 930 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++G+ + AFA G+DI+ T A+ F P++ Sbjct: 691 IRQAFIAPAGSRIVAADYSQIELRIMAHLSGDKGLLAAFAAGKDIHRATAAEVFGLPLEA 750 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 751 VSADQRRSAKAINFGLIY 768 >gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP] gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP] Length = 930 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y + AK + + +QQF +++ Sbjct: 752 VTSEQRRNAKAINFGLIYGMSAFGLSRQLDISRPDAKKYMDLYFQRYPSVQQFMTDIREK 811 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + E L++ D A++ K + GTA +++K+A Sbjct: 812 AKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P] gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P] Length = 980 Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 45/66 (68%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++ E+ I AF NGEDI+ +T AK FN P+++V+++QR+ K + Sbjct: 753 LLAADYSQIELRIIAALSEEENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTV 812 Query: 436 ELALGY 441 + Y Sbjct: 813 NFGIVY 818 >gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894] Length = 625 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 386 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 445 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 446 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 476 >gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210] Length = 622 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 383 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 442 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 443 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 473 >gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 743 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 505 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 564 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 565 VTSEQRRNAKAINFGLIY--GMSAF-GLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 621 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKA 509 ++ + + + E L++ D A++ K + GTA +++K+A Sbjct: 622 RAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRA 675 >gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91] Length = 622 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 383 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 442 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 443 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 473 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 20/165 (12%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+C A G+KL++AD + IE RV A I+G+ I A+ GED+++ T + + PI ++ Sbjct: 345 RACFAAPPGRKLILADYSQIELRVAAQISGDTRMISAYQQGEDLHLLTASLVAHKPIAEI 404 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASH---CGLDLQQFSQ----NVKSTSTFEDWEQ 477 + ++R K + L + GA + A + L+Q ++ K+ + W Q Sbjct: 405 TPQERQAAKAVNFGLIFGMGAPGLQQYAQQNYGVEMSLEQATEFRERFFKAYTGIHRWHQ 464 Query: 478 AESHHLWMQDQ--------YPEFA-----VKDKLIGTACELVKKA 509 + HL + + Y E A + GTA ++VKKA Sbjct: 465 SIKAHLPKEGRTLAGRKFVYYEKAGLPGYYNTPVQGTAADIVKKA 509 >gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112] Length = 618 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 379 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 438 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 439 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 469 >gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] Length = 875 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 25/153 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ + + + DG++ T Q ++TGR S QN+P R+EE Sbjct: 589 IDGMVDLIKEDGKIHTTFQ-QTIAQTGRISSTNPNLQNIPI--RTEE------------- 632 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R + S G L+ AD + IE RVLA +A ++ I AF NG DI+ Sbjct: 633 ---------GRLIRKAFVPSQGSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRK 683 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 T ++ F DKV+ QR+ K + + Y G Sbjct: 684 TASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIG 716 >gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus influenzae 10810] Length = 935 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 31/175 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 697 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 756 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 757 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 813 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + + E L++ D A++ K + GTA +++K+A Sbjct: 814 REKAKTQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 868 >gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98] Length = 620 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 381 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 440 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 441 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 471 >gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14] Length = 619 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 380 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 439 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 440 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 470 >gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] Length = 861 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 61/246 (24%), Positives = 100/246 (40%), Gaps = 58/246 (23%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L + + +GR+ T A+ TGR S QN+P + Sbjct: 576 LEPMPQLADKNGRIHTTFNQL-ATATGRLSSSNPNLQNIPIR------------------ 616 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 G +RSC +AS G +LV AD + IE RVLA ++G+ +AFA G+DI+ Sbjct: 617 ------GALGPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHAR 670 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FS 463 T F+T +VS ++R K + L Y G + + G+ L++ FS Sbjct: 671 TAGILFDT--TEVSADERRKAKTINFGLLYGMGP---QKLGRELGISLKEAKEFIAVYFS 725 Query: 464 QNVKSTSTFEDWE--------------------QAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + +E+ E + S + M Q A+ + G+A Sbjct: 726 KLSRVREFYEEIEAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQARRMAINTVVQGSAA 785 Query: 504 ELVKKA 509 +++KKA Sbjct: 786 DIIKKA 791 >gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3] gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3] Length = 919 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G ++V AD + IE R++A I+ ++ ++AF+ GEDI+ T A+ F + Sbjct: 680 IREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQGEDIHRATAAEVFGVTPLE 739 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR I KV+ L Y G F +AS+ G+ Sbjct: 740 VSNDQRRIAKVINFGLIY--GMSAFG-LASNLGI 770 >gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra magnipapillata] Length = 542 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A+ G + AD + IE R++A I+ + ++AF +G D++ T A+ F P+D+ Sbjct: 303 VREAFVAAPGCVIASADYSQIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQ 362 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y G F +A + G+D Sbjct: 363 VSSEQRRYAKVINFGLIY--GMSAF-GLARNLGID 394 >gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 782 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 6/102 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ AD + IE R++A ++G++ ++AF G+D++ T A+ F +D+ Sbjct: 537 IRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLEAFNQGKDVHSATAAEVFGVELDQ 596 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQF 462 V++EQR K + L Y G F +A G+ D QQ+ Sbjct: 597 VTQEQRRRAKAINFGLIY--GMSAFG-LAKQLGVGRNDAQQY 635 >gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b] gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b] Length = 923 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] Length = 837 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 31/187 (16%) Query: 260 TLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 TL+S+ +S I Q+ K +L S+ + L A ++DGR+ T +RTG Sbjct: 523 TLESLRPYSPVIDQILKYRTYAKLLST-----YVEGLLSAQAADGRVHSTF-IQTEARTG 576 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P I LG +R +A GK+LV Sbjct: 577 RISSTEPNLQNIP---------------------IRTELG---SRLRGFFVAGAGKELVD 612 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA I G++ +AF +G DI+ +T AK ++ P +V+ + R+ K + Sbjct: 613 ADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKIYHIPESEVTPQLRSASKAINFG 672 Query: 439 LGYQGGA 445 + Y GA Sbjct: 673 IMYGKGA 679 >gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9] Length = 923 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] Length = 876 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 637 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 696 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 697 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 727 >gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229] gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247] gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH] gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU] gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247] gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH] gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU] gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229] Length = 926 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 687 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 747 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 777 >gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] Length = 923 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177] gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] Length = 923 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 894 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L ++++ DGR+ TL A+ TGR S QN+P R+EE Sbjct: 608 VDGLVKSIADDGRIHTTLNQTIAA-TGRLSSTEPNLQNIPI--RTEE------------- 651 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R + G +L+ AD + IE R++A ++G++ I+AF GED++ Sbjct: 652 ---------GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHN 702 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++AF PID+V E R K M L Y Sbjct: 703 YVASRAFGVPIDEVDHELRRRVKAMSYGLAY 733 >gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215] Length = 923 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 895 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L ++++ DGR+ TL A+ TGR S QN+P R+EE Sbjct: 609 VDGLVKSIADDGRIHTTLNQTIAA-TGRLSSTEPNLQNIPI--RTEE------------- 652 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R + G +L+ AD + IE R++A ++G++ I+AF GED++ Sbjct: 653 ---------GRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHN 703 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++AF PID+V E R K M L Y Sbjct: 704 YVASRAFGVPIDEVDHELRRRVKAMSYGLAY 734 >gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668] gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668] Length = 923 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8] gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8] Length = 908 Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R++A ++G+ + AF +GEDI+ T A+ F +D+ Sbjct: 668 IRQAFIAPKGYKLLAADYSQIELRIMAHLSGDRGLLTAFEHGEDIHKATAAEVFGVTVDE 727 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 728 VTGDQRRSAKAINFGLIY 745 >gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] Length = 922 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 69/155 (44%), Gaps = 25/155 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L V GR+ T A+ TGR S QN+P Sbjct: 632 LDPLPRLVDGQGRIHTTFN-QKATATGRLSSSNPNLQNIP-------------------- 670 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + PLG +R+C IA G+ LV AD + +E RVLA ++ + + AF GEDI+ Sbjct: 671 -VRGPLG---KRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQGEDIHAR 726 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 T A ++ +VS +QR K + L Y GA+ Sbjct: 727 TAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGAQ 761 >gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13] gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13] Length = 923 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e] gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e] Length = 923 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a] gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a] Length = 923 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305] gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305] Length = 923 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] Length = 957 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I + G K+V AD + IE R++A +A ++ I AFA G+DI+ T A+ F +D+ Sbjct: 719 IRQAFITNKGYKIVAADYSQIELRIMAHLANDEGMIIAFAEGKDIHRATAAEIFGLALDQ 778 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 779 VTSEQRRSAKAINFGLIY 796 >gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20] gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20] gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] Length = 930 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 31/175 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 752 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRADAQKYMDLYFQRYPSVQQFMTDI 808 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + + E L++ D A++ K + GTA +++K+A Sbjct: 809 REKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A I+ ++ +KAFAN EDI+ T A+ F ++ Sbjct: 681 IREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFANNEDIHRATAAEIFGIAPEQ 740 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V EQR KV+ L Y G F +AS+ G++ Sbjct: 741 VESEQRRYAKVINFGLIY--GMSAFG-LASNLGIE 772 >gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH] gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH] Length = 930 Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 81/175 (46%), Gaps = 31/175 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 692 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 V+ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 752 VTSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDI 808 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + + E L++ D A++ K + GTA +++K+A Sbjct: 809 REKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 863 >gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] Length = 930 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D+ Sbjct: 691 IRQAFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGVPLDE 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 751 VTSDQRRSAKAINFGLIY 768 >gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602] gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602] Length = 934 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA ++ AD + IE R++A ++ ++ +KAFA G+DI+ T A+ F TP++K Sbjct: 694 IRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFAEGKDIHRATAAEVFGTPLEK 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 754 VSGEQRRSAKAINFGLIY 771 >gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] Length = 904 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 35/179 (19%) Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 RL ++ ++K A+ DGR+ T + + TGR S QN+P R++E Sbjct: 610 TRLMTTAQGLIK------AIGPDGRIHTTFR-QDVAATGRLSSTDPNLQNIPV--RTDE- 659 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWK 398 + +R + G + L+ AD + IE R++A ++G+D Sbjct: 660 ---------------------ARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDDGL 698 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF GED++ ++AF PID+V E R K M L Y G F +AS G+ Sbjct: 699 IEAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAMSYGLAY--GLSAFG-LASQLGV 754 >gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586] gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586] Length = 929 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + +KAF++G DI+ T A+ F P+DK Sbjct: 690 IRQAFIAPQGYQILAADYSQIELRIMAHLSRDAGLLKAFSDGLDIHRATAAEVFGLPLDK 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTTEQRRSAKAINFGLIY 767 >gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4] gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4] Length = 912 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 39/187 (20%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L ++V+ DGR+ TLQ A+ TGR S QN+P R+EE G I Sbjct: 627 LIKSVADDGRIHTTLQQTIAA-TGRLSSIEPNLQNIPV--RTEE-----------GRRIR 672 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 D + ++ +L+ AD + IE R++A ++ ++ I+AF +GED++ + Sbjct: 673 D----------AFVVGDGYAELMTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVAS 722 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 +AF+ P +++ EQR K M L Y GL SQ +K ST + Sbjct: 723 RAFSVPAAEITPEQRYRVKAMSYGLAY--------------GLSAYGLSQQLK-ISTEDA 767 Query: 475 WEQAESH 481 EQ E++ Sbjct: 768 KEQMEAY 774 >gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] Length = 976 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 27/140 (19%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + GAS TGR S QN+P R +I Sbjct: 697 GRVHTSFSMVGAS-TGRLSSSDPNVQNIPIRTSEGRQI---------------------- 733 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 R+ IA+ G KL+ D + IE R++A +AGE I+AF +G DI+ T ++ F P+ Sbjct: 734 ---RTAFIAAEGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPL 790 Query: 422 DKVSKEQRAIGKVMELALGY 441 D++ E R K + + Y Sbjct: 791 DQMDSETRRRAKAINFGIIY 810 >gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] Length = 971 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ T AK + IDK Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDK 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A +D ++ + + FE + Q + + Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844 >gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147] Length = 923 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|313631120|gb|EFR98660.1| DNA polymerase [Listeria seeligeri FSL N1-067] Length = 80 Score = 61.6 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 42/69 (60%) Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R+ IA +G + D + IEARV+AW+AGE W++ F + IY + ++ F+ P Sbjct: 11 SQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIP 70 Query: 421 IDKVSKEQR 429 I++V K R Sbjct: 71 IEEVDKNLR 79 >gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069] gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069] Length = 915 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 47/79 (59%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ IA G K++ AD + IE R++A ++ ++ +KAF G D++ T A+ F+ P+D Sbjct: 676 SIRTAFIAPKGSKILAADYSQIELRIMAHLSQDEGLLKAFEEGLDVHSATAAEVFDVPLD 735 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ QR K + L Y Sbjct: 736 EVTSNQRRNAKAINFGLIY 754 >gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786] Length = 923 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G K+V AD + IE R++A I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 684 IREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 744 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 774 >gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4] gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4] Length = 922 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 742 VTSEQRRRAKAVNFGLIY 759 >gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3] gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3] Length = 922 Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 742 VTSEQRRRAKAVNFGLIY 759 >gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] Length = 971 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ T AK + IDK Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIHAATAAKVYKISIDK 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A +D ++ + + FE + Q + + Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844 >gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7] gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7] Length = 922 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D Sbjct: 682 IRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDS 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 742 VTSEQRRRAKAVNFGLIY 759 >gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80] gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80] Length = 525 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 285 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 344 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS EQR K + L Y G F +A G+ Sbjct: 345 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 375 >gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95] gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95] Length = 896 Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 24/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + G + TGR S QNLP +E E + T++A D Sbjct: 629 GRVHTSFNQTGTA-TGRLSSSEPNLQNLPIREEDGERIRSTVKAQK------------DD 675 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 V L+ AD + IE RVLA + ++ I AF NGEDI+ T A F ID Sbjct: 676 YV-----------LLSADYSQIELRVLAHLTNDETLINAFNNGEDIHALTAAAIFGVKID 724 Query: 423 KVSKEQRAIGKVMELALGY 441 V R +GKV+ +L Y Sbjct: 725 DVDYNMRRVGKVVNFSLVY 743 >gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083] gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083] Length = 945 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + ++ D GR+ + GAS TGR + QN+P RSEE Sbjct: 658 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPI--RSEE------------- 701 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R IA GK LV D + IE R+LA +AG D +AF +G DI+ Sbjct: 702 ---------GRRIREAFIAEEGKVLVALDYSQIELRILAHVAGIDSLKQAFRDGHDIHAM 752 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+ P+D+++ + R K + + Y Sbjct: 753 TASEMFDVPLDEMTADVRRQAKAINFGVIY 782 >gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] Length = 857 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 32/164 (19%) Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341 A KLN+ L + + DGR+ T A RTGR S QN+P R E ++ Sbjct: 562 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRTELGSQL-- 618 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 R+ +A G LV AD + IE R+LA I G++ +A Sbjct: 619 -----------------------RAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQQA 655 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 F NGEDI+ +T AK + P +V+ R+ K + + Y GA Sbjct: 656 FLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGA 699 >gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703] gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703] Length = 931 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ + +KAF++G DI+ T A+ F PIDK Sbjct: 691 IRQAFIAPEGYCIVAADYSQIELRIMAHLSCDAGLLKAFSDGLDIHRATAAEVFGLPIDK 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 751 VTAEQRRSAKAINFGLIY 768 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G +V AD + IE R++A I+G++ ++AFA+GEDI+ T A+ F Sbjct: 673 IREAFIAAPGNVIVSADYSQIELRIMAHISGDENMLQAFADGEDIHRATAAEIFGVERRA 732 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V EQR KV+ L Y G F +A + G++ Sbjct: 733 VDSEQRRYAKVINFGLIY--GMSAF-GLAGNLGIE 764 >gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] Length = 931 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 125/301 (41%), Gaps = 52/301 (17%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN-------DRGYRI-----DLDLVLKL 209 Y D + T L RL+ D + L + Q I R R D+ L + Sbjct: 499 YAAEDADVTLRLHNRLMENIDQDEKLKAIYQDIEVPLVPVLSRIERTGVLIDDMKLAAQS 558 Query: 210 QELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 QE IAQ +L++ ++ + + S +Q AL LF G+ ++ + S + Sbjct: 559 QE-IAQRLDELEQKAYEIAEQEFNMNSPKQLQAL---LFEKMGLPVIKKTPSGTPST-NE 613 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWS 321 + +LA D L +L + KL + L + ++S+ GR+ T + TGR S Sbjct: 614 EVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINSETGRVH-TSYHQAVTATGRLS 672 Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 QN+P R E I R +A +G K++ D Sbjct: 673 STDPNLQNIPIRNEEGRRI-------------------------RQAFVAPHGYKIMAVD 707 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ + AF G+DI+ T A+ T ID+VS EQR K + L Sbjct: 708 YSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTTIDQVSSEQRRRAKAVNFGLI 767 Query: 441 Y 441 Y Sbjct: 768 Y 768 >gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] Length = 971 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ T AK + IDK Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A +D ++ + + FE + Q + + Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844 >gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] Length = 932 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F P++K Sbjct: 692 IRQAFIAPQGYRIMAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFGLPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTSEQRRSAKAINFGLIY 769 >gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII] gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII] gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866] Length = 935 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 31/175 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+ Sbjct: 697 IRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDE 756 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 ++ EQR K + L Y G F ++ G+ +QQF ++ Sbjct: 757 ITSEQRRNAKAINFGLIY--GMSAFG-LSRQLGISRADAQKYMDLYFQRYPSVQQFMTDI 813 Query: 467 KSTSTFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + + E L++ D A++ K + GTA +++K+A Sbjct: 814 REKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 868 >gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891] gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891] Length = 931 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ T ID+ Sbjct: 691 IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIMGTTIDQ 750 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQQFSQNV 466 VS EQR K + L Y G F +A G+ + Q+ ++ Sbjct: 751 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQDYMNKYFERYPGVMQYMEDT 807 Query: 467 KSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 +ST++ + + + +S + + A+ + GTA +++KKA Sbjct: 808 RSTASEQGYVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 861 >gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] Length = 971 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ T AK + IDK Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A +D ++ + + FE + Q + + Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844 >gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4] gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4] Length = 971 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ T AK + IDK Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A +D ++ + + FE + Q + + Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844 >gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] Length = 971 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ T AK + IDK Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A +D ++ + + FE + Q + + Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844 >gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703] gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703] Length = 938 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765 Query: 440 GYQGG 444 Y G Sbjct: 766 IYGMG 770 >gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] Length = 885 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 11/126 (8%) Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVV-ADLA 382 P+ + QT+ A R + +DP + + ++ +R + S G +++V AD + Sbjct: 606 PKTHKIYSTFNQTVTATGRLSS-SDPNLQNIPVKTEMGREIRKVFVPSAGDRVLVDADYS 664 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++G++ I F +DI+ T ++ FN P+D VS+EQR+ K + L Y Sbjct: 665 QIELRVLAHLSGDENLIDTFVKNQDIHTRTASEIFNVPMDAVSREQRSHAKAINFGLIY- 723 Query: 443 GGAKVF 448 G + F Sbjct: 724 -GKQAF 728 >gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 898 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 88/314 (28%), Positives = 136/314 (43%), Gaps = 46/314 (14%) Query: 144 PYDCTRANHVQAWQLFGEYCKR-DVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRI 201 P+ CT+ V A F E +R D E R+ +++ +PLS W+L Q D G I Sbjct: 461 PWCCTQVEAVAA--AFVEIRERLDAEGHRDTLEQVSLPLS------WVLGQMELD-GVAI 511 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 D + + K+ E + KL++ I ++ + I SS+Q A+ + I Sbjct: 512 DSEDLGKMSEEFGERLAKLEKTIFEIAGREFNIASSKQLGAVLFDELELPVIKRTKTGYS 571 Query: 260 TLKSILSH-SNITQLAKDLILNRLASSGSAILKLNT----LSEAVSSD-GRLRGTLQFYG 313 T +L + T+ K I L +NT L AV+ D GR+ T Q Sbjct: 572 TNAEVLERLAGKTKHPKHTIAKYLLEHRKLAKLINTYTDVLQAAVNPDSGRIHATFQ--- 628 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 +T SG + + P +R+ I P G VR + G Sbjct: 629 --QTAGVSGRLITTE--PDLQRT---------------PIKTPEG---KRVRQAFVTRPG 666 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQRAI 431 KL+ AD + IE R+LA + + ++AFA G D++ T A+ F +KVS+EQR + Sbjct: 667 YKLISADWSQIELRLLAHFSSDAHLVEAFAKGLDVHARTAAQLFEVGGGPEKVSREQRGV 726 Query: 432 GKVMELALGYQGGA 445 GK++ A Y GA Sbjct: 727 GKLVNFATIYGQGA 740 >gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A] gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A] Length = 971 Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ T AK + IDK Sbjct: 732 IRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIHAATAAKVYKISIDK 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A +D ++ + + FE + Q + + Sbjct: 792 VTREQRSKAKTANFGIIY--GISVF-GLAERMNVDRKEAKELID--GYFETYPQIKEY 844 >gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] Length = 920 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 48/78 (61%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A +G K+V AD + IE R++A ++ ++ +KAFA G+DI+ T A+ F +++ Sbjct: 681 VRQAFVARDGYKIVAADYSQIELRIMAHLSQDNGLLKAFAEGKDIHQATAAEVFGLELEQ 740 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 741 VSTEQRRRAKAINFGLIY 758 >gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] Length = 938 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++ + + AF+ G+DI+ T ++ F+ P+D+ Sbjct: 698 IRQAFIAQPGYKIVAADYSQIELRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDE 757 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 758 VTTEQRRSAKAINFGLIY 775 >gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3] Length = 857 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 73/164 (44%), Gaps = 32/164 (19%) Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341 A KLN+ L + + DGR+ T A RTGR S QN+P R E ++ Sbjct: 562 AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRTELGSQL-- 618 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 R+ +A G LV AD + IE R+LA I G++ +A Sbjct: 619 -----------------------RAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQQA 655 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 F NGEDI+ +T AK + P +V+ R+ K + + Y GA Sbjct: 656 FLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGA 699 >gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] Length = 878 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 30/156 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KLN+ L+ +S DGR+ GT + TGR S QN+P + Sbjct: 586 KLNSTYAQGLTAYISEDGRIHGTFN-QTITATGRISSTDPNLQNIPMK------------ 632 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 L G +R I +G V AD + IE RVLA ++ + AF N Sbjct: 633 -LELGR-----------LIRKAFIPEDGYVFVDADYSQIELRVLAHLSEDQVMQNAFLNH 680 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ TT ++ F+ PID+V+ QR K + + Y Sbjct: 681 VDIHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVY 716 >gi|315106932|gb|EFT78908.1| hypothetical protein HMPREF9601_00873 [Propionibacterium acnes HL030PA1] Length = 112 Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 53/110 (48%), Gaps = 13/110 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLC--AYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET SP PL K GV+ YAE L Y+ D PV++ D +P ++L Sbjct: 1 MRQIAIDIETFSPAPLAKTGVYPYAEHPDFRLLIFGYSIDGGPVEVVDLASGGGLPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL----------GIDIPSKRWICTSV 98 L D V AHN+ FER+ L G PS+ W CT V Sbjct: 61 AALVDPGVAKWAHNAAFERVALSAWLQRHHPELLAAGFLDPSQ-WRCTMV 109 >gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 963 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ + + AF+ G+DI++ T A+ F P+ + Sbjct: 717 IRHAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNAFSEGQDIHLITAAEVFGLPVSQ 776 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 777 VSAQQRRSAKAINFGLIY 794 >gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno] gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno] Length = 928 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 126/309 (40%), Gaps = 65/309 (21%) Query: 161 EYCKRDVEAT---RELFKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 EY D + T + +F+ +P +D E L + + G +D+D Sbjct: 495 EYAVEDADVTWQLKNVFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDF----- 549 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSI 264 + + K LD DI +L I + + +T+ L LF ID T + Sbjct: 550 --LKEYSKTLDADIAQLETAIAQQAGETFNLASPKQLGDILFEKLKIDSKPKKTKTGQYA 607 Query: 265 LSHSNITQLAK------DLI----LNRLASSGSAILKLNTLSEAVSSDGRLRGT-LQFYG 313 S + A D++ + +L S+ L L E S GR+ T +Q Sbjct: 608 TSEEVLAPFAAKHKIVADILEWRQVQKLKSTYVDALPL----EVNKSTGRVHTTYMQTVA 663 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A TGR S QN+P I P G VR IA N Sbjct: 664 A--TGRLSSNNPNLQNIP---------------------IRTPRG---QQVRKAFIARNP 697 Query: 374 KK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 L+ AD + IE R++A ++ E I++F +GEDI+ T AK FN P+++V++EQR+ Sbjct: 698 DYVLLSADYSQIELRIIAALSEEHNMIESFLHGEDIHRATAAKVFNVPLEEVTREQRSHA 757 Query: 433 KVMELALGY 441 K + + Y Sbjct: 758 KTVNFGIIY 766 >gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385] gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385] Length = 934 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 754 VSSEQRRRAKAVNFGLIY 771 >gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] Length = 933 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ + + AFA G+DI+ T + F P+DK Sbjct: 693 IRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAFAAGKDIHRATAGEVFGLPLDK 752 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 753 VTNEQRRSAKAINFGLIY 770 >gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] Length = 921 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I + G AD + IE R++A ++G++ I+AF G DI+ T AK + PID+ Sbjct: 682 IRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIEAFIEGHDIHAATAAKIYKKPIDE 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V++++R K + Y G VF Sbjct: 742 VTRDERTKAKRANFGIIY--GITVF 764 >gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] Length = 928 Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G ++V AD + IE R++A ++G+ + AFA G DI+ T A+ F +D Sbjct: 689 IRQAFVARPGYRIVAADYSQIELRIMAHLSGDKGLLDAFAEGRDIHTATAAEVFGVALDA 748 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 749 VSGEQRRSAKAINFGLIY 766 >gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)] gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)] Length = 906 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 726 VSSEQRRRAKAVNFGLIY 743 >gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587] gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2] gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587] gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2] Length = 886 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 646 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 705 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 706 VSSEQRRRAKAVNFGLIY 723 >gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555] gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016] gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555] gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 880 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + DG++ + TGR S QN+P + E +EI R I Sbjct: 596 LKGVIEEDGKIHSNFN-QTVTTTGRLSSTEPNLQNIPIKYEMGKEI---------RKIFI 645 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 D R C+I S AD + IE RVLA I+G++ I AF N DI+ T Sbjct: 646 PDN--------RDCVILS-------ADYSQIELRVLAHISGDENLINAFINHNDIHTKTA 690 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ FN P+ +V+ QR+ K + + Y G Sbjct: 691 SEVFNVPLGEVTSTQRSNAKAVNFGIVYGIG 721 >gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591] gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591] Length = 928 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ + ++AF+NG DI+ T A+ F P+D+ Sbjct: 689 IRQAFIAPEGYHILAADYSQIELRIMAHLSRDAGLLRAFSNGLDIHRATAAEVFGLPLDR 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTTEQRRSAKAINFGLIY 766 >gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] Length = 932 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F P++K Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDEGLLAAFAAGKDIHRATAAEVFGLPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTTEQRRSAKAINFGLIY 769 >gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4] Length = 934 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 754 VSSEQRRRAKAVNFGLIY 771 >gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] Length = 890 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 650 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 709 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 710 VSSEQRRRAKAVNFGLIY 727 >gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80] gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80] Length = 906 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 726 VSSEQRRRAKAVNFGLIY 743 >gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101] gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101] Length = 949 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 61/127 (48%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GK 374 TGR S QN+P R ER +I R +A + Sbjct: 686 TGRLSSNNPNLQNIPIRTERGRQI-------------------------RKAFVARDENY 720 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + IE R++A ++GE+ I AF NGEDI+ T AK F+ +++VS+EQR+ K Sbjct: 721 TLISADYSQIELRIIAALSGEENMIAAFQNGEDIHRATAAKVFDVALEEVSREQRSNAKT 780 Query: 435 MELALGY 441 + + Y Sbjct: 781 VNFGIIY 787 >gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395] gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27] gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395] gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395] gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27] Length = 934 Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 754 VSSEQRRRAKAVNFGLIY 771 >gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33] gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9] gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236] gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9] gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33] gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236] Length = 906 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 726 VSSEQRRRAKAVNFGLIY 743 >gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51] gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51] Length = 930 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 690 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 749 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 750 VSSEQRRRAKAVNFGLIY 767 >gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2] gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2] Length = 938 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 44/272 (16%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 ER L + + G ++D D + ++ AQ+ L+++I ++ G + L Sbjct: 534 ERPLVPVLAQMERHGIKVDRDTLSRMSNAFAQKMAGLEDEIQEMA-GRPFNVGSPKQLGE 592 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI--------------LNRLASSGSAI 289 LF G+++ D + + ++S + +DL L++L S+ + Sbjct: 593 ILFDEMGLEMPDGKKPSTGKTGAYSTGADVLEDLATLHDMPRRILDWRQLSKLKSTYTDA 652 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L+ + +E GR+ + GA+ TGR + QN+P RSEE Sbjct: 653 LQEHINAET----GRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSEE----------- 694 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 G I R +A +GK +V D + IE R+LA IAG D +AF +G DI+ Sbjct: 695 GRRI-----------REAFVAEDGKVIVSLDYSQIELRILAHIAGIDALKQAFLDGIDIH 743 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+ P+D+++ + R K + + Y Sbjct: 744 AMTASEMFDVPLDEMTPDVRRQAKAINFGVIY 775 >gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33] gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757] gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33] gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757] Length = 934 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 754 VSSEQRRRAKAVNFGLIY 771 >gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] Length = 929 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F P+++ Sbjct: 690 IRQAFVAPEGYRIMAADYSQIELRIMAHLSQDQGLLKAFAEGKDIHRATAAEVFGLPLEQ 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTSEQRRSAKAINFGLIY 767 >gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39] gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39] Length = 934 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 754 VSSEQRRRAKAVNFGLIY 771 >gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21] gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21] Length = 906 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 726 VSSEQRRRAKAVNFGLIY 743 >gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] Length = 906 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 666 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 725 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 726 VSSEQRRRAKAVNFGLIY 743 >gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 33/179 (18%) Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGC 323 + +LA+ L RL ++ KL + L + V +DGR+ T GA+ TGR S Sbjct: 583 LEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSS 641 Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R E S I R +A G +L+ AD + Sbjct: 642 DPNLQNIPVRTELSRRI-------------------------RQAFVAPAGARLLSADYS 676 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R+LA + + ++AF + ED++ T A+ F ++V+ +QR I KV+ + Y Sbjct: 677 QIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAY 735 >gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10] gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10] Length = 934 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 694 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 754 VSSEQRRRAKAVNFGLIY 771 >gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K] gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K] Length = 897 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 33/179 (18%) Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGC 323 + +LA+ L RL ++ KL + L + V +DGR+ T GA+ TGR S Sbjct: 583 LEKLAEQHALPRLVLEHRSLSKLKGTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSS 641 Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R E S I R +A G +L+ AD + Sbjct: 642 DPNLQNIPVRTELSRRI-------------------------RQAFVAPAGARLLSADYS 676 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R+LA + + ++AF + ED++ T A+ F ++V+ +QR I KV+ + Y Sbjct: 677 QIELRILAHYSDDPGLLQAFRDREDVHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAY 735 >gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129] gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae] Length = 899 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L +AV DGR+ T AS TGR S QN+P Sbjct: 611 LDGLIKAVGDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP-------------------- 649 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 + P G +RS + G K L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 650 -VRTPAGRK---IRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTGEDLHN 705 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ P+D+V+ E R K M L Y Sbjct: 706 FVGSKVFDVPVDQVTPELRRRVKAMSYGLVY 736 >gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] Length = 653 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 49/88 (55%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 RSC A +G+KL++AD + IE RV A I+G+ A GED++ T + + P+ +V Sbjct: 420 RSCFTAPDGRKLILADYSQIELRVAAQISGDSRMKSACQKGEDLHALTASLISSIPVSQV 479 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMA 452 +K QR K + L + GA+ K A Sbjct: 480 TKAQRQAAKAVNFGLIFGMGAEGLKQYA 507 >gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457] gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457] Length = 851 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 611 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 670 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 671 VSSEQRRRAKAVNFGLIY 688 >gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21] gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21] Length = 892 Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 92/351 (26%), Positives = 148/351 (42%), Gaps = 58/351 (16%) Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 LAL + +H A +AR K ++ D RA G Y D +AT Sbjct: 424 ALALEYLDHRMI---SYAEVARSGKCELNFSEVDLDRA---------GPYSCEDADATYL 471 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L + L+P L D E L + + G ++D+DL+ +L ++ +L+ Sbjct: 472 LHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIELEA 531 Query: 223 DIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 I + G I S +Q L LF G+ + ++G + + +LA++ + Sbjct: 532 QIHEHCGGPFNINSPKQ---LGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVA 588 Query: 281 RLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 RL +I KL +T ++A+ + GR+ + + TGR S QN+P Sbjct: 589 RLLLQYRSISKLKSTYTDALPKLVAPATGRVHTSYN-QAVTSTGRLSSSDPNLQNIPI-- 645 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 R EE RG +R IA G ++ AD + IE RVLA ++G Sbjct: 646 RGEE---------GRG-------------IRRAFIAEPGSLMLSADYSQIELRVLAHLSG 683 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 + +AFA GEDI+ T ++ F + V+ E R KV+ + Y GA Sbjct: 684 DRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGA 734 >gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] Length = 975 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 596 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 655 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 656 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 714 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 715 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 750 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 751 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 810 Query: 440 GYQGG 444 Y G Sbjct: 811 IYGMG 815 >gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52] gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52] Length = 317 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+ Sbjct: 77 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQ 136 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 137 VSSEQRRRAKAVNFGLIY 154 >gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1] gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1] Length = 929 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + +++D GR+ + GA+ TGR + QN+P RSEE Sbjct: 642 DALQDHINADTGRVHTSYSIAGAN-TGRLASTDPNLQNIPI--RSEE------------- 685 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK LV D + IE R+LA IAG D AF +G+DI+ Sbjct: 686 ---------GRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAFKDGQDIHAA 736 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P+++++ + R K + + Y Sbjct: 737 TASEMFNVPLEEMTPDVRRQAKAINFGVIY 766 >gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 928 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR I G K+V AD + IE R++A ++ + +KAF+ G+DI+ T A+ FN +++ Sbjct: 688 VRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVFNVSLEE 747 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 748 VTTEQRRNAKAINFGLIY 765 >gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190] Length = 975 Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 596 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 655 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 656 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 714 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 715 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 750 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 751 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 810 Query: 440 GYQGG 444 Y G Sbjct: 811 IYGMG 815 >gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541] gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541] Length = 934 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D+ Sbjct: 695 IRQAFIARKGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLDQ 754 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 755 VTSDQRRSAKAINFGLIY 772 >gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906] gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906] Length = 949 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G K+V AD + IE R++A ++ + + AFA G+DI+ T ++ F P+D+ Sbjct: 709 IRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLDE 768 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 769 VTAEQRRSAKAINFGLIY 786 >gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902] Length = 930 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765 Query: 440 GYQGG 444 Y G Sbjct: 766 IYGMG 770 >gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] Length = 929 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 38/206 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ T ID+ Sbjct: 689 IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTTIDQ 748 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + F + ED Sbjct: 749 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQDYMNKYFERYPGVMQYMEDT 805 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA------ 509 A + +++ + PE A+ + GTA +++KKA Sbjct: 806 RSAAADQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDE 865 Query: 510 W-RAKHQGVLQLWKDLTEGFACVVQE 534 W +A+ QG ++L + + V+E Sbjct: 866 WIQAEGQGRVKLLMQVHDELVFEVEE 891 >gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1] gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1] Length = 922 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 742 VTTEQRRRAKAVNFGLIY 759 >gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9] gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9] Length = 908 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 47/82 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A +G KL+ AD + +E R++A I+ ++ +KAF G DI+ +T ++ F P+ + Sbjct: 669 VRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAFKEGADIHRSTASEVFGVPLSE 728 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V QR K + L Y GA Sbjct: 729 VDDSQRRAAKAINFGLIYGMGA 750 >gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130] gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130] Length = 978 Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA++G KLV AD + IE RVLA +A +AFA+G DI+ T ++ FN P++ Sbjct: 735 IRTAFIAADGHKLVSADYSQIELRVLAHMADISQLKQAFADGIDIHAMTASEMFNVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + R K + + Y G F +A++ G+D + S +K Sbjct: 795 MDPSIRRQAKAINFGIIY--GISAFG-LANNLGIDRGEASDYIK 835 >gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum] Length = 831 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 53/251 (21%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L + E SDGRL G A+ TGR S QN+P R+E Sbjct: 546 LLPMEEGRGSDGRLHGQFNQTVAA-TGRLSSSRPNLQNIP--ARTE-------------- 588 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 LGL VR C +A G L+ AD + IE R+LA +G+ + +AF+ GEDI+ Sbjct: 589 -----LGL---LVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHAR 640 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY------------------QGGAKVFKTMAS 453 T A F P V+ E R K + + Y QG + ++ + Sbjct: 641 TAALLFGEP---VTSESRRRAKTINFGILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVA 697 Query: 454 HCGLDLQQFSQNVKSTSTFEDW-------EQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 G ++ + + T + S + +++ AV L G+A +LV Sbjct: 698 GVGPYFEKIREEARRTGRIRTLLGRIRPIPEIRSDNRNVREYGERMAVNSVLQGSAADLV 757 Query: 507 KKAWRAKHQGV 517 KKA Q V Sbjct: 758 KKAMVDLSQAV 768 >gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] Length = 886 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 67/156 (42%), Gaps = 30/156 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KLN+ L +SSDGR+ GT + TGR S QN+P + Sbjct: 594 KLNSTYAIGLGSFISSDGRIHGTFN-QTITATGRISSTDPNLQNIPMR-----------M 641 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 L R +R I +G V AD + +E RVLA ++ + AF N Sbjct: 642 ELGR-------------LIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNN 688 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ TT ++ F PID+V+ QR K + + Y Sbjct: 689 IDIHSTTASEVFGVPIDEVTPLQRRHAKAVNFGIVY 724 >gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200] Length = 922 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 742 VTTEQRRRAKAVNFGLIY 759 >gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32] gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32] Length = 922 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + +KAFA G+DI+ T A+ F T D Sbjct: 682 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGTDFDA 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 742 VTTEQRRRAKAVNFGLIY 759 >gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] Length = 911 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 31/178 (17%) Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 + Q+A D L RL + KL TL + + GR+ + GA+ TGR S Sbjct: 597 LEQMADDYALPRLILEHRGLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAA-TGRLSSS 655 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R+E A +R IA G +L+ AD + Sbjct: 656 EPNLQNIPV--RTE----------------------AGRRIRRAFIAEEGHQLLAADYSQ 691 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + +KAFA G+DI+ T A+ F ++VS +QR K + L Y Sbjct: 692 IELRIMAHLSQDAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAINFGLIY 749 >gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153] Length = 930 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765 Query: 440 GYQGG 444 Y G Sbjct: 766 IYGMG 770 >gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601] gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601] Length = 935 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E ++ D GR+ + GA+ TGR S QN+P RSEE Sbjct: 648 DALQEHINKDTGRVHTSYVISGAN-TGRLSSTDPNLQNIPV--RSEE------------- 691 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK +V D + IE R+LA +A D +AF +G+DI+ Sbjct: 692 ---------GRRIREAFVAPEGKTIVALDYSQIELRILAHMAEIDALKQAFRDGQDIHAM 742 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P+D+++ E R K + + Y Sbjct: 743 TASEMFNVPMDEMTSEIRRQAKAINFGVIY 772 >gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] Length = 971 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 28/175 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL + +GR+ + ++ TGR S QN+P R+EE Sbjct: 682 DTLPHHMDENGRIHTSFSM-ASTTTGRLSSSEPNLQNIPV--RTEE-------------- 724 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R+ +A GKKL+ AD + IE R+LA IA AF NG DI+ T Sbjct: 725 --------GRAIRTAFVAPKGKKLLSADYSQIELRILAHIADIPQLKDAFQNGVDIHAMT 776 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ FN P++ + R K + + Y G F +A+ + ++ Q +K Sbjct: 777 ASEMFNVPVEGMEPSVRRRAKAINFGIIY--GISAF-GLANQLAIPREEAGQYIK 828 >gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355] Length = 908 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 529 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 588 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 589 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 647 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 648 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 683 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 684 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 743 Query: 440 GYQGG 444 Y G Sbjct: 744 IYGMG 748 >gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136] Length = 930 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQQAYAAADQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGL 765 Query: 440 GYQGG 444 Y G Sbjct: 766 IYGMG 770 >gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 922 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 74/148 (50%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++D R+ T ++TGR S QN+P R+EE G I Sbjct: 638 LHKYIAADHRIHTTFH-QTLTQTGRLSSSDPNLQNIP--ARTEE-----------GRRI- 682 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 R+ IA+ G L+ AD + IE R+LA ++G+ +KAFA EDI+ T A Sbjct: 683 ----------RAAFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAA 732 Query: 415 KAFNT-PIDKVSKEQRAIGKVMELALGY 441 + F+ P+D V+ E R +GK + ++ Y Sbjct: 733 RVFHMDPVD-VTSEHRRVGKTINFSIVY 759 >gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 908 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 45/207 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L +V+SDGR+ T A+ TGR Sbjct: 604 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 647 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A +R + G +L+ A Sbjct: 648 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGEGYAELMTA 683 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + I+AF GED++ ++AF+ PID+V+ E R K M L Sbjct: 684 DYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGL 743 Query: 440 GY----QGGAKVFKTMASHCGLDLQQF 462 Y G A+ K + ++Q+ Sbjct: 744 AYGLSAYGLAQQLKISTEEAKVQMEQY 770 >gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 906 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 97/222 (43%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +V+SDGR+ T A+ TGR Sbjct: 602 LQHLLTHRDVTRLK---------------VTVDGLLASVASDGRIHTTFNQTIAA-TGRL 645 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A +R + +G +L+ A Sbjct: 646 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYSELMTA 681 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF PI +V+ E R K M L Sbjct: 682 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIGEVTAELRRRVKAMSYGL 741 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 742 AY--------------GLSAYGLSQQLK-ISTEEAKEQMDAY 768 >gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99] gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99] Length = 899 Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 41/182 (22%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +V+ DGR+ T A+ TGR Sbjct: 595 LQHLLAHRDVTRLK---------------VTVDGLLNSVADDGRIHTTFNQTIAA-TGRL 638 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T A +R + +G +L+ A Sbjct: 639 SSTEPNLQNIP-------IRTD-----------------AGRQIRDAFVVGDGYSELMTA 674 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 675 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 734 Query: 440 GY 441 Y Sbjct: 735 AY 736 >gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 894 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L++ +S DGR+ GT + TGR S QN+P R E + Sbjct: 611 LTQYISEDGRIHGTFN-QTITATGRISSTEPNLQNIPIRMEMGK---------------- 653 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + +G + AD + IE R+LA ++G++ I+A+ + DI+ T Sbjct: 654 ---------AIRKVFVPKDGFVFLDADYSQIELRILAHMSGDEKLIEAYNSSADIHRATA 704 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ F P+++V+ EQR K + + Y Sbjct: 705 AQVFGVPLEEVTDEQRRNAKAVNFGIIY 732 >gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] Length = 888 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 363 CVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I+S+ ++V AD + IE RVLA I+ ++ I +F N EDI+ T ++ FN PI Sbjct: 647 IIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIHTRTASEVFNVPI 706 Query: 422 DKVSKEQRAIGKVMELALGY 441 D+V+ E R+ K + + Y Sbjct: 707 DEVTSEMRSSAKAVNFGIVY 726 >gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100] Length = 864 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 71/150 (47%), Gaps = 25/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L EA+ DGR+ T GA+ TGR S QN+P + Sbjct: 577 IDGLIEAIGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTD---------------- 619 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 A +R+ A G+ L+ AD + IE RV+A ++ ++ I+A+ +GED++ Sbjct: 620 --------AGRRIRAAFHAGWGETLLTADYSQIEMRVMAHLSQDEGLIEAYKSGEDLHNY 671 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K + L Y Sbjct: 672 VGSRVFDVPVDQVTPELRRRVKALSYGLVY 701 >gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399] Length = 931 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 104/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F T + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGL 765 Query: 440 GYQGG 444 Y G Sbjct: 766 IYGMG 770 >gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] Length = 932 Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ ++ + + L+ AD + IE R++A ++G+ I AFA+GED++ A+AF P+D+V Sbjct: 693 RAFVVGAGYESLLTADYSQIEMRIMAHLSGDKGLIGAFASGEDLHTFVAAQAFGIPVDEV 752 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 E R K M L Y G F +A G+ ++ + +++ Sbjct: 753 DPELRRRIKAMSYGLAY--GLSAFG-LAGQLGIHPEEAREQMEA 793 >gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N] gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N] Length = 904 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 3/99 (3%) Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 LA VR +A LV AD + IE R++A ++ + +AFA GEDI+ T A+ F Sbjct: 660 LAGRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATAAEVFG 719 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 P+ +V+ EQR K + L Y G VF +AS+ G+ Sbjct: 720 VPLPEVTSEQRRAAKAINFGLIY--GMGVFG-LASNLGI 755 >gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] Length = 875 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 25/153 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ + + + DG++ T Q ++TGR S QN+P R+EE Sbjct: 589 IDGMVDLIKEDGKIHTTFQ-QTIAQTGRISSTNPNLQNIPI--RTEE------------- 632 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R + S G L+ AD + IE RVLA +A ++ I AF +G DI+ Sbjct: 633 ---------GRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRK 683 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 T ++ F DKV+ QR+ K + + Y G Sbjct: 684 TASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIG 716 >gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013] Length = 930 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF NGED++ T A+ F T + Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR K + L Y G +A G+D Sbjct: 750 VSSEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 781 >gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M] gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M] Length = 899 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 82/182 (45%), Gaps = 41/182 (22%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + ++ L +V+ DGR+ T A+ TGR Sbjct: 595 LQHLLAHRDVTRLK---------------VTVDGLLNSVADDGRIHTTFNQTIAA-TGRL 638 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T A +R + +G +L+ A Sbjct: 639 SSTEPNLQNIP-------IRTD-----------------AGRQIRDAFVVGDGYSELMTA 674 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF PID+V+ E R K M L Sbjct: 675 DYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGL 734 Query: 440 GY 441 Y Sbjct: 735 AY 736 >gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] Length = 931 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 89/206 (43%), Gaps = 38/206 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ T ID+ Sbjct: 691 IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIMGTTIDQ 750 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + F + ED Sbjct: 751 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQDYMNTYFERYPGVMQYMEDT 807 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA------ 509 A + +++ + PE A+ + GTA +++KKA Sbjct: 808 RSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDE 867 Query: 510 W-RAKHQGVLQLWKDLTEGFACVVQE 534 W +A+ G ++L + + VQE Sbjct: 868 WIQAEGDGRVKLLMQVHDELVFEVQE 893 >gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1] gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1] Length = 914 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 39/181 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L + V+ DGR+ T A+ TGR Sbjct: 610 LEHLLAHRDATRLK---------------VTVDGLLKTVAEDGRIHTTFNQTVAA-TGRL 653 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + + G I D ++ L+ AD Sbjct: 654 SSTEPNLQNIPVR-------------TDAGRQIRD----------GFVVGEGYDSLLTAD 690 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G++ I+AF GED++ A+AF PI++V+ E R K M L Sbjct: 691 YSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLA 750 Query: 441 Y 441 Y Sbjct: 751 Y 751 >gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] Length = 932 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++K Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTHEQRRSAKAINFGLIY 769 >gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14] gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14] Length = 937 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 44/81 (54%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF NGED++ T A+ F T + Sbjct: 690 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VSKEQRAIGKVMELALGYQGG 444 VS EQR K + L Y G Sbjct: 750 VSPEQRRYAKTINFGLIYGMG 770 >gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10] gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua] gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516] gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92] gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516] gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003] gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10] gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516] gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua] gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92] gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516] gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004] gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003] gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 932 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++K Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTTEQRRSAKAINFGLIY 769 >gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454] gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 927 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A I+G+ + AF +GED++ T ++ F + Sbjct: 688 IREAFIAPPGSSIVSADYSQIELRIMAHISGDASLMAAFEHGEDVHRATASEIFGVTRQE 747 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ EQR I KV+ L Y G F +AS+ G+ Sbjct: 748 VTSEQRRIAKVINFGLIY--GMSAFG-LASNLGI 778 >gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] Length = 932 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++K Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTTEQRRSAKAINFGLIY 769 >gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola] gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A] gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola] gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A] Length = 932 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++K Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTTEQRRSAKAINFGLIY 769 >gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953] gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] Length = 932 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++K Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTTEQRRSAKAINFGLIY 769 >gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem] gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem] Length = 892 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 132/304 (43%), Gaps = 46/304 (15%) Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 G Y D +AT L + L+P L D E L + + G ++D+DL+ +L Sbjct: 459 GPYSCEDADATYLLHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKEL 518 Query: 210 QELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ +L+ I + G I S +Q L LF G+ + ++G + Sbjct: 519 SAGFGKQLIELEAQIHEHCGGPFNINSPKQ---LGEMLFERMGLAVGKKTKGKTGWSTNV 575 Query: 268 SNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWS 321 + +LA++ + RL +I KL +T ++A+ + GR+ + + TGR S Sbjct: 576 EELERLAEEHEVARLLLQYRSISKLKSTYTDALPKLVDPATGRVHTSYN-QAVTSTGRLS 634 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P R EE RG +R IA G ++ AD Sbjct: 635 SSDPNLQNIPI--RGEE---------GRG-------------IRRAFIAEPGSLMLSADY 670 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++G+ +AFA GEDI+ T ++ F + V+ E R KV+ + Y Sbjct: 671 SQIELRVLAHLSGDRVLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIY 730 Query: 442 QGGA 445 GA Sbjct: 731 GQGA 734 >gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] Length = 932 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++K Sbjct: 692 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTTEQRRSAKAINFGLIY 769 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +DGR+ T +RTGR S QN+P R++E Sbjct: 602 LRSEIGADGRIHATFN-QAVARTGRISSERPNLQNIP--VRTDE---------------- 642 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 R +A+ G LV AD + IE RVLA ++G++ ++ + D++ A Sbjct: 643 ------GKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHTLVAA 696 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F P ++V+ +QR++ K++ L Y Sbjct: 697 RVFGVPAERVTPQQRSVAKMVTYGLSY 723 >gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565] gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565] Length = 921 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I S G KLV AD + IE R++A ++G+ + AFA G+DI+ T A+ F ID Sbjct: 681 IRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVAIDA 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R K + L Y Sbjct: 741 VTTDMRRSAKAINFGLIY 758 >gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038] Length = 750 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++K Sbjct: 510 IRQAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEK 569 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 570 VTTEQRRSAKAINFGLIY 587 >gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] Length = 949 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++ + + AFA G+DI+ T ++ F P+++ Sbjct: 709 IRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLLDAFAQGKDIHRATASEVFGIPLEE 768 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 769 VTSEQRRSAKAINFGLIY 786 >gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei] Length = 615 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++ I+ ++ ++AFA+GEDI+ T A+ F + Sbjct: 376 IREAFVAPPGSKIVSADYSQIELRIMLHISEDESLLRAFAHGEDIHRATAAEVFGVTPLE 435 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR I KV+ L Y G F +AS+ G+ Sbjct: 436 VTSDQRRIAKVINFGLIY--GMSSFG-LASNLGI 466 >gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937] gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937] Length = 944 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + ++AF++G DI+ T A+ F P+D+ Sbjct: 705 IRQAFIAPEGYRILAADYSQIELRIMAHLSRDAGLLRAFSHGLDIHRATAAEVFGLPLDR 764 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 765 VTTEQRRSAKAINFGLIY 782 >gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] Length = 888 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 30/175 (17%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H + + K LN+L S+ L+ + E + DGR+R + + + TGR S Sbjct: 582 HEIVDYILKYRSLNKLIST-----YLDGILEYIMDDGRVRTSFK-QMITATGRLSSVDPN 635 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P RSEE G+ I R +A K + AD + IE Sbjct: 636 LQNIPI--RSEE-----------GKNI-----------RKVFVADKNKVFIDADYSQIEL 671 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 RVLA ++ + I +F N DI+ T ++ F PI++V+ QR K + + Y Sbjct: 672 RVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKAVNFGIVY 726 >gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] Length = 948 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I N L+ AD + IE R++A ++GE+ I AF N +DI+ +T AK FN + Sbjct: 707 LIRKAFIPRNENYTLISADYSQIELRIIAALSGEENMIAAFQNNQDIHKSTAAKVFNVAL 766 Query: 422 DKVSKEQRAIGKVMELALGY 441 + V+KEQR+ K + + Y Sbjct: 767 EDVTKEQRSNAKTVNFGIIY 786 >gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] Length = 843 Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 79/165 (47%), Gaps = 14/165 (8%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R AS G+ LVVAD + IE R+LA ++ E ++AF NGEDI+ T A+ F+ + Sbjct: 600 IRDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFDVRPES 659 Query: 424 VSKEQRAIGKVMELAL-----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ E R K++ + GY ++ + +Q++ + + F A Sbjct: 660 VTPELRRRAKMVNFGILYGISGYGLATRLGNVHPAEADRYIQRYFERHPRVTEFIRKSLA 719 Query: 479 ESHH------LWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG 516 E+ L+ + +Y PE K+K + E + A+ A+ QG Sbjct: 720 EAEELGYATTLFGRRRYVPELRNKNKNVRKLGERI--AFNARVQG 762 >gi|330508158|ref|YP_004384586.1| DNA polymerase I [Methanosaeta concilii GP-6] gi|328928966|gb|AEB68768.1| DNA polymerase I, putative [Methanosaeta concilii GP-6] Length = 628 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 26/162 (16%) Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 +L LN E V DGR+ F S TGR S Q +PR+ Sbjct: 320 LLFLNKWLEKVHPLDGRVHPQY-FQIPSSTGRISSRHPNAQQIPRR-------------- 364 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G + +R + GK+ V ADL+ IE R++A I+G++ +AF G D Sbjct: 365 ----------GDDAPAIRRLFRPAAGKRYVKADLSNIELRIMARISGDEAMQEAFIKGID 414 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 ++ T ++ TP ++V+ QR K M L Y G AK + Sbjct: 415 LHRLTASRISGTPFEEVTDSQRQAAKAMNFLLIYGGSAKSLQ 456 >gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] Length = 933 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++G+ + AFA G+DI+ T A+ F ++ Sbjct: 693 IRQAFIAPQGYKIVAADYSQIELRIMAHLSGDKGLLTAFAAGKDIHRATAAEVFGLKLED 752 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 753 VTSEQRRSAKAINFGLIY 770 >gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121] gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121] Length = 925 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 30/177 (16%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA D L R+ ++ KL + L E + GR+ T + TGR S Sbjct: 612 LQELALDYELPRIIMEHRSLSKLKSTYTDKLPEMIQKTGRIH-TSYHQAVTATGRLSSTD 670 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P R+ E +R IA G KL+ AD + I Sbjct: 671 PNLQNIPI--RTAE----------------------GRRIRQAFIAPEGYKLIAADYSQI 706 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 E R+++ ++ + ++AFAN +D++ T A+ F +D+V+ EQR K + L Y Sbjct: 707 ELRIMSHLSQDPGLLEAFANNKDVHKATAAEVFEVALDEVTGEQRRRAKAINFGLIY 763 >gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] Length = 1041 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA L+ AD + IE R+LA I E ++AF GEDI+ T A F+ P+++ Sbjct: 795 IRRAFIADPSYVLLTADYSQIELRILANITNEPRLVEAFNQGEDIHTITAASLFSVPVEE 854 Query: 424 VSKEQRAIGKVMELALGY 441 V+++QR + K + A+ Y Sbjct: 855 VTRDQRRLAKTVVYAVLY 872 >gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187] gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187] Length = 910 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K+V AD + IE R++A ++ +D ++AFA+G+DI+ T A+ N + Sbjct: 670 IRQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLLQAFAHGQDIHRATAAEIMNITPEA 729 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 730 VTSEQRRNAKAINFGLIY 747 >gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479] gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479] Length = 598 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 32/178 (17%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA D + ++ + KLN+ L+ + D R+ GT + TGR S Sbjct: 285 LDKLAPDYPVVQMILDYRQLTKLNSTYAEGLAVYIGPDERIHGTFN-QTITATGRISSTE 343 Query: 325 FQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R E EI R + +G + AD + Sbjct: 344 PNLQNIPVRMELGREI-------------------------RKIFVPEDGYVFIDADYSQ 378 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE RVLA ++G++ I A+ + EDI+ T ++ F+TP+D+V+ QR K + + Y Sbjct: 379 IELRVLAHMSGDERLIGAYRHAEDIHAITASEVFHTPLDEVTPLQRRNAKAVNFGIVY 436 >gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] Length = 909 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KLV AD + +E RVLA ++G++ I+AF G DI+ T ++ F P D+ Sbjct: 670 LRRVFVAGQGSKLVDADYSQVELRVLADMSGDEDMIEAFDRGVDIHRNTASQVFGVPFDE 729 Query: 424 VSKEQRAIGKVMELALGY 441 VS E R+ K + + Y Sbjct: 730 VSAELRSAAKAVNFGIIY 747 >gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1] gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1] Length = 922 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F T D Sbjct: 682 IRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGLLNAFAEGKDIHRATAAEVFGTDFDS 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 742 VTSEQRRRAKAVNFGLIY 759 >gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] Length = 875 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 25/153 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ + + + DG++ T Q ++TGR S QN+P R+EE Sbjct: 589 IDGMVDLIKKDGKIHTTFQ-QTIAQTGRISSTNPNLQNIPI--RTEE------------- 632 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R + S G L+ AD + IE RVLA +A ++ I AF +G DI+ Sbjct: 633 ---------GRLIRKAFVPSGGNVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRK 683 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 T ++ F DKV+ QR+ K + + Y G Sbjct: 684 TASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIG 716 >gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4] gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4] Length = 915 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALN 348 + ++ L +AV+ DGR+ T A+ TGR S QN+P R + EI Sbjct: 625 VTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRNDAGREI--------- 674 Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 R + G L+ AD + IE R++A ++G++ I+AF GED Sbjct: 675 ----------------RDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGED 718 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ ++AF PI++V+ E R K M L Y Sbjct: 719 LHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY 752 >gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275] Length = 931 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF NGED++ T A+ F T + Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR K + L Y G +A G+D Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 781 >gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] Length = 864 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V DGR+ T AS TGR S QN+P + S G Sbjct: 578 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTES-------------GR 623 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 TI RS I G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 624 TI-----------RSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYKEGEDLHN 672 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+DKV+ E R K M L Y Sbjct: 673 YVGSRVFDVPVDKVTSELRRRVKAMSYGLVY 703 >gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963] Length = 915 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALN 348 + ++ L +AV+ DGR+ T A+ TGR S QN+P R + EI Sbjct: 625 VTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRNDAGREI--------- 674 Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 R + G L+ AD + IE R++A ++G++ I+AF GED Sbjct: 675 ----------------RDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGED 718 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ ++AF PI++V+ E R K M L Y Sbjct: 719 LHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY 752 >gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945] Length = 930 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 44/81 (54%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF NGED++ T A+ F T + Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VSKEQRAIGKVMELALGYQGG 444 VS EQR K + L Y G Sbjct: 750 VSPEQRRYAKTINFGLIYGMG 770 >gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] Length = 937 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/81 (39%), Positives = 44/81 (54%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF NGED++ T A+ F T + Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGTAPEN 749 Query: 424 VSKEQRAIGKVMELALGYQGG 444 VS EQR K + L Y G Sbjct: 750 VSPEQRRYAKTINFGLIYGMG 770 >gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] Length = 923 Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ P+D+ Sbjct: 683 IRQAFIAPQGYKVLAIDYSQIELRIMAHLSGDKALLDAFCHGKDIHAATAAEILGLPLDQ 742 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 743 VSSEQRRRAKAINFGLIY 760 >gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] Length = 913 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A +D + AF +G D++ T A+ F P++ Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHGLDVHRATAAEVFGVPLED 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS +QR K + L Y G F +A G++ Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765 >gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469] gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469] Length = 880 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ +++DGR+ GT + TGR S QN+P R+E L R Sbjct: 597 LAGFIAADGRIHGTFN-QTITATGRISSTDPNLQNIPV--RTE---------LGR----- 639 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R IA G L+ AD + IE RVLA ++G++ I AF + DI+ T + Sbjct: 640 --------LLRKVFIAKEGYVLIDADYSQIELRVLAAMSGDETLIAAFRDNADIHRLTAS 691 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ P D+V+ QR K + + Y Sbjct: 692 QVFHIPFDEVTPLQRRNAKAVNFGIVY 718 >gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 933 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AFA+G D++ T A+ F ID Sbjct: 694 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATAAEVFGRTIDT 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 754 VSGDERRAAKAINFGLMY 771 >gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3] gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3] Length = 936 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 48/231 (20%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++ + ++AF+ G DI+ T ++ F+ +D+ Sbjct: 696 IRQAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEAFSTGLDIHKATASEVFSVSVDE 755 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V+ QR K + L Y G AK K S L + ++ T+ + + Sbjct: 756 VTTNQRRSAKAINFGLIYGMSAFGLAKQLKISRSDAKLYMDKYFHRYPGVLTYMQTTRDK 815 Query: 480 SHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKK------AWRA 512 + L + Q P A+ + GTA +++KK AW Sbjct: 816 AREQGFVETILGRRLQLPHINSRNGILKKASERAAINAPMQGTAADIIKKAMLDVAAWVE 875 Query: 513 KH-----QGVLQLWKDL--------TEGFACVVQEGGSISARRVA-NVPRL 549 K Q ++Q+ +L E + C++QE I A+ V +VP L Sbjct: 876 KQAPSQVQLLMQVHDELVFCIKEDQVENYTCIIQE---IMAKAVILDVPLL 923 >gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] Length = 887 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 71/154 (46%), Gaps = 28/154 (18%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALN 348 + ++ L +AV+ DGR+ T A+ TGR S QN+P R + EI Sbjct: 597 VTVDGLLKAVAEDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRNDAGREI--------- 646 Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 R + G L+ AD + IE R++A ++G++ I+AF GED Sbjct: 647 ----------------RDGFVVGQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGED 690 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ ++AF PI++V+ E R K M L Y Sbjct: 691 LHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAY 724 >gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] Length = 908 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 95/233 (40%), Gaps = 49/233 (21%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L +V+ DGR+R T Q A+ TGR S QN+P R + +I Sbjct: 617 LLRSVADDGRIRTTFQQTIAA-TGRLSSADPNLQNIPIRTDAGRQIR------------- 662 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R+ ++ L+ AD + IE R++A ++G++ I AF +GED++ Sbjct: 663 -----------RAFVVGPGYATLLTADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVG 711 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F P D+V+ R+ K M L Y GL SQ + Sbjct: 712 SRVFGVPTDEVTPTMRSKIKAMSYGLAY--------------GLSSYGLSQQLA------ 751 Query: 474 DWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 E +E+ L M D + F V+D L G + + A G + DLT Sbjct: 752 -IEVSEAAAL-MTDYFERFGGVRDYLTGVVDQARATGYTATVLGRRRYLPDLT 802 >gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 933 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AFA+G D++ T A+ F ID Sbjct: 694 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATAAEVFGRTIDT 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 754 VSGDERRAAKAINFGLMY 771 >gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181] gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181] Length = 904 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 44/81 (54%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA +G K++ AD + IE R++A ++ + + AF N EDI+ T + FN Sbjct: 664 VREAFIAPDGSKILSADYSQIELRIMAHLSKDKRLVAAFKNNEDIHTITAGEIFNIDNSA 723 Query: 424 VSKEQRAIGKVMELALGYQGG 444 VS EQR KV+ L Y G Sbjct: 724 VSSEQRRYAKVINFGLIYGMG 744 >gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901] gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901] Length = 908 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++ + KAFA G D++ +T A+ F T ++ Sbjct: 669 IRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGLQKAFAEGLDVHKSTAAEVFGTALEN 728 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 729 VSSEQRRSAKAINFGLIY 746 >gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950] Length = 908 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 41/182 (22%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L +V+SDGR+ T A+ TGR Sbjct: 604 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 647 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A +R + +G +L+ A Sbjct: 648 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYSELMTA 683 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF PI++V+ E R K M L Sbjct: 684 DYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFGVPIEEVTAELRRRVKAMSYGL 743 Query: 440 GY 441 Y Sbjct: 744 AY 745 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 46/66 (69%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++ E+ ++AF NGEDI+ +T +K F+ P+++V++EQR+ K + Sbjct: 722 LLAADYSQIELRIIAALSQEETMMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTV 781 Query: 436 ELALGY 441 + Y Sbjct: 782 NFGIIY 787 >gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617] Length = 929 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ + + AFA+ +DI+ T A+ F +DK Sbjct: 689 IRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVSLDK 748 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 749 VSGEQRRSAKAINFGLIY 766 >gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968] gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150] gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968] gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150] Length = 894 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 54/237 (22%), Positives = 94/237 (39%), Gaps = 61/237 (25%) Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P RSEE +R+ IA Sbjct: 627 AVTATGRLSSSEPNLQNIPI--RSEE----------------------GRLIRTAFIAPE 662 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 ++ AD + IE R++A ++ ++ +KAFANG D++ T ++ F P+++++ EQR Sbjct: 663 DNIILAADYSQIELRIMAHLSQDENLLKAFANGWDVHAATASEIFQIPLEEINNEQRRRA 722 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQ-------FSQNVKSTSTFEDWEQAESHH--- 482 K + L Y G F +A G++ Q + Q + + + ++HH Sbjct: 723 KAINFGLIY--GMSSFG-LAKQIGVERQDAQYYIDTYFQRYPKVLEYMNRTRQQAHHQGY 779 Query: 483 ------------------LWMQDQYPEFAVKDKLIGTACELVKKA------WRAKHQ 515 L Q A+ + GTA +++K A W+ H+ Sbjct: 780 VETLFGRRLYLPEINARNLMRQKAAERTAINAPMQGTAADIIKNAMICIAKWQNSHE 836 >gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163] Length = 929 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ + + AFA+ +DI+ T A+ F +DK Sbjct: 689 IRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVSLDK 748 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 749 VSGEQRRSAKAINFGLIY 766 >gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY] gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY] Length = 922 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 33/178 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G+ + AD + IE R++A I+G++ + AF G D++ T A+ F +D+ Sbjct: 683 VREAFVAPAGRVIASADYSQIELRIMAHISGDEALLHAFREGLDVHRATAAEVFGVALDQ 742 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVF--KTMASHCGLD--------LQQFSQNVKST 469 VS EQR KV+ L Y G AK +T A+ +D ++Q+ + K+ Sbjct: 743 VSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAYIDRYFQRYPGVKQYMEETKAQ 802 Query: 470 STFEDW-EQAESHHLWMQDQYPEF--------------AVKDKLIGTACELVKKAWRA 512 + + E L++ PE A+ + GTA +L+KKA A Sbjct: 803 AKARGYVETVFGRRLYL----PEINSPNGPRRGAAERAAINAPMQGTAADLIKKAMVA 856 >gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 933 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AFA+G D++ T A+ F ID Sbjct: 694 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASGTDVHRATAAEVFGRTIDT 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 754 VSGDERRAAKAINFGLMY 771 >gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] Length = 932 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G AD + IE R++A ++G+ I+AF G+DI+ T +K + P+++ Sbjct: 693 IRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIEAFQKGQDIHAATASKIYKVPLEE 752 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A +D ++ + + FE++ + + Sbjct: 753 VTREQRSKAKTANFGIIY--GISVF-GLAERLNVDRKEAKELID--GYFENYPHVKEY 805 >gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 952 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A ++ ++ I AFA G+DI+ T A+ F + + Sbjct: 714 IRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGE 773 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 774 VTSEQRRSAKAINFGLIY 791 >gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] Length = 952 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A ++ ++ I AFA G+DI+ T A+ F + + Sbjct: 714 IRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGE 773 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 774 VTSEQRRSAKAINFGLIY 791 >gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 952 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K+V AD + IE R++A ++ ++ I AFA G+DI+ T A+ F + + Sbjct: 714 IRQAFVAREGYKIVAADYSQIELRIMAHLSNDEGMINAFAEGKDIHRATAAEIFGVELGE 773 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 774 VTSEQRRSAKAINFGLIY 791 >gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873] gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873] Length = 881 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 40/257 (15%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVD 255 G+++D D + ++ E E K L+++I KL D I+S +Q + + I Sbjct: 498 GFKVDKDRLTEIGEKFKAEIKMLEKEIHKLAGEDFNIKSPKQLGKILFEKLDLPVIKKTK 557 Query: 256 MSEGTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 T +L SH I+++ + +L S+ + L + DG++ + Sbjct: 558 TGYSTNAEVLEKLKDSHPIISKIIDYRQITKLDSTY-----VEGLKHVIDEDGKIHSSFN 612 Query: 311 FYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P + E EI R + Sbjct: 613 -QTVTTTGRLSSTEPNLQNIPIKHEMGREI-------------------------RKVFV 646 Query: 370 ASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 A+N + ++ AD + IE RVLA IA ++ I AF + +DI+ T ++ F P+++V+ Sbjct: 647 ANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITASEVFRVPVEEVTPLM 706 Query: 429 RAIGKVMELALGYQGGA 445 R+ K + + Y GA Sbjct: 707 RSNAKAVNFGIVYGIGA 723 >gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4] gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4] Length = 901 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + IE R++A ++ ++ + AF GEDI+ T A+ F TP++ Sbjct: 662 IRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLAAFEAGEDIHQRTAAEIFRTPLEG 721 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 722 VTPEQRRSAKAINFGLIY 739 >gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42] gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42] Length = 922 Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G+ + AD + IE R++A I+G++ + AF G D++ T A+ F +D+ Sbjct: 683 VREAFVAPAGRVIASADYSQIELRIMAHISGDEALLHAFREGLDVHRATAAEVFGVALDQ 742 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 743 VSSEQRRYAKVINFGLIY 760 >gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328] gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328] Length = 875 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 25/153 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ + + + DG++ T Q ++TGR S QN+P R+EE Sbjct: 589 IDGMVDLIKKDGKIHTTFQ-QTIAQTGRISSTNPNLQNIPI--RTEE------------- 632 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R + S G L+ AD + IE RVLA +A ++ + AF +G DI+ Sbjct: 633 ---------GRLIRKAFVPSEGNMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRK 683 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 T ++ F DKV+ QR+ K + + Y G Sbjct: 684 TASEVFKVDFDKVTSLQRSNAKAVNFGIVYGIG 716 >gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z] gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z] Length = 956 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G +++ AD + IE R++A ++G+ AF G DI+ +T ++ F P++ Sbjct: 718 IRQAFVARDGYRIIAADYSQIELRIMAHLSGDKGLTTAFVEGRDIHRSTASEIFGIPLED 777 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 778 VSAEQRRSAKAINFGLIY 795 >gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4] Length = 901 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 67/148 (45%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ V DGR+R T + TGR S QN+P R E EI + Sbjct: 618 LAACVDEDGRIRSTF-MQTVTATGRISSTEPNLQNIPIRMELGREI-----------RKV 665 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 P DCV + AD + IE RVLA ++G++ I AF G+DI+ +T Sbjct: 666 FYP---KKDCV-----------FLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTA 711 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 + FNTP D+V+ QR K + + Y Sbjct: 712 SLVFNTPFDEVTDLQRRRAKAVNFGIVY 739 >gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae bacterium] Length = 894 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 75/304 (24%), Positives = 131/304 (43%), Gaps = 51/304 (16%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ----------TINDRGYRIDLDLV 206 +L EY D + T L++ L PL G+ D LL + + G ++D + Sbjct: 461 ELATEYAAEDADITWRLYENLSPLLQGD-DFKLLQELELPLIEVLAEMELHGMKLDKSHL 519 Query: 207 LKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 KL +LI Q+ + ++I L + I S +Q L + LF + ++ ++ + Sbjct: 520 QKLSQLIQQKLEDQQKEIYSLAGEEFNINSPKQ---LSVILFEKLELPVIKKTKNGYSTD 576 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVSSD-----GRLRGTLQFYGASRTG 318 +S + QLA + L + + ++KL +T ++A+ D GR+ + A+ TG Sbjct: 577 VS--VLEQLAAEHELPDVVLTYRQLVKLKSTYADALQEDIFNNTGRVHTSFNQTVAA-TG 633 Query: 319 RWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 R S QN+P R E EI R +A L+ Sbjct: 634 RLSSSNPNLQNIPIRTEMGREI-------------------------RKAFVAEGNNHLL 668 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E RVLA ++ ++ + AF GEDI+ T + F T +++ E R + K + Sbjct: 669 SADYSQVELRVLAHLSEDEALVDAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNF 728 Query: 438 ALGY 441 + Y Sbjct: 729 GIVY 732 >gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] Length = 918 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I S G KLV AD + IE R++A ++G+ + AFA G+DI+ T A+ F +D Sbjct: 678 IRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALDA 737 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R K + L Y Sbjct: 738 VTTDMRRSAKAINFGLIY 755 >gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131] gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131] Length = 930 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P+++ Sbjct: 691 IRQAFIAREGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLEQ 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 751 VTSDQRRSAKAINFGLIY 768 >gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231] gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231] Length = 898 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +L+ D + +E R++A +G++ +AFA GEDI+ T A+ F T +++ Sbjct: 659 IRRGFIARQGYRLLAVDYSQVELRIMAHFSGDERLHRAFAAGEDIHRATAAEVFATALEQ 718 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 719 VTAEQRRAAKAINFGLIY 736 >gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061] gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 691 IRQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLAAFAQGKDIHRATAAEVFGVPLEH 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 751 VTGEQRRSAKAINFGLIY 768 >gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113] gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113] Length = 901 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +LV AD + IE R++A ++ ++ + AF EDI+ T + F TP+++ Sbjct: 662 IRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEVFRTPLEE 721 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 722 VTPEQRRSAKAINFGLIY 739 >gi|307692866|ref|ZP_07635103.1| DNA polymerase I [Ruminococcaceae bacterium D16] Length = 900 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 28/169 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L + ++ DGR+ Q + TGR S QN+P I TQ Sbjct: 615 DGLGKVIAPDGRIHTCFQ-NTVTATGRLSSTEPNLQNIP-------IRTQ---------- 656 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 LG +R +A+ GK LV AD + IE R+LA +AG+ I+ F +G DI+ T Sbjct: 657 ----LGAQ---LREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIEGFHSGADIHTIT 709 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 ++ F D+V+ + R K + + Y G F +++ G+ +QQ Sbjct: 710 ASQVFGVTPDQVTPQMRRSAKAVNFGIVY--GISPF-SLSQDIGVSVQQ 755 >gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] Length = 932 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++K Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAFAAGKDIHRATAAEVFGLPLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 752 VTNDQRRSAKAINFGLIY 769 >gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli] gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli] Length = 898 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A + + +KAFA G DI+ T A+ N P+++ Sbjct: 659 IRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGLLKAFAQGLDIHQATAAEVLNIPLER 718 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 719 VTHEQRRSAKAINFGLMY 736 >gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured Planctomycetales bacterium HF0500_02G17] Length = 987 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 12/162 (7%) Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVVADLAG 383 PR +R QT+ A R + +DP + + ++ +R +A G LV AD + Sbjct: 698 PRTKRIHASFNQTVAATGRLSS-SDPNLQNIPIRTELGREIRKAFVAEPGHLLVAADYSQ 756 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE R+LA ++ + I+AF G+DI+ A+ + P+ +VS+EQR K++ + Y Sbjct: 757 IELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRNGAKMVNFGIVYGV 816 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 G A+ S G + + + +TF + A++H Sbjct: 817 TAFGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAH 858 >gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] Length = 924 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 32/216 (14%) Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ ++ L+ + +H+++ +L L +LA S + ++L S GR+ T Sbjct: 603 VISTAQDVLEELAAHNDVPRLV--LEFRQLAKLKSNYV--DSLPLLADSQGRVHTTFHQV 658 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + AL R +R+ IA+ Sbjct: 659 GTA-TGRLSSTNPNLQNIPVR-----------TALGRE-------------IRAAFIAAP 693 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G+KL+ AD + IE R++A + + + A++ G+DI+ T ++ F + + KE R Sbjct: 694 GRKLLSADYSQIELRLMAHFSEDPLLLNAYSTGQDIHTLTASEVFGVAPEAMDKETRNRA 753 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 K + + Y G F +A G+D + Q + + Sbjct: 754 KAVNFGIVY--GISPFG-LAQQLGIDQHEARQYIDT 786 >gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238] gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238] Length = 928 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 29/163 (17%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L++L S+ + L+ + SE GR+ + GA+ TGR S QN+P R++E Sbjct: 632 LSKLKSTYTDALQTHINSET----GRVHTSYSITGAN-TGRLSSTDPNLQNIPI--RTDE 684 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G I R IA GK LV D + IE R+LA +A D Sbjct: 685 -----------GRKI-----------REAFIADEGKVLVALDYSQIELRILAHVANIDAL 722 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +AF +G DI+ T ++ FN P+D+++ + R K + + Y Sbjct: 723 KQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINFGVIY 765 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A I+ ++ ++AFA GEDI+ T A+ F Sbjct: 672 IREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGEDIHRATAAEIFGVARGD 731 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y G F +A + G++ Sbjct: 732 VSSEQRRYAKVINFGLIY--GMSAFG-LAGNLGIE 763 >gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2] gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2] Length = 942 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 68/284 (23%), Positives = 110/284 (38%), Gaps = 62/284 (21%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+TL DGR+ T + TGR S QN+P RSE Sbjct: 656 LDTLGPLRRQDGRVHTTYN-QTITATGRLSSSNPNLQNIPT--RSE-------------- 698 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 LG V++ A G + D + IE R+LA ++G++ I+AF GED + Sbjct: 699 -----LG---HTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGEDFHAE 750 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467 T A+ F P+D+V+ R+ K + + Y G ++ S + ++ + Sbjct: 751 TAARVFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQTLDIPVSEAQEMIDRYFEAYP 810 Query: 468 STSTFEDWEQAESHH-------LWMQDQYPEFAVKD--------------KLIGTACELV 506 F D AE+ + PE +K+ + G+A +++ Sbjct: 811 GVRAFLDRTVAEAAERGYAETMFGRRRPIPELRMKNATQRSFGERTAMNHPMQGSAADII 870 Query: 507 KKAWRAK----HQG------VLQLWKDLTEGFACVVQEGGSISA 540 K A R H G +LQ+ +L F C + E +SA Sbjct: 871 KIAMRRVAERLHGGDLHAKMILQVHDELD--FECPIAEVADVSA 912 >gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] Length = 927 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KLV D + IE R++A ++ + + AFA+G DI+ T A+ F P+++ Sbjct: 688 IRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPGLLGAFASGADIHRATAAEVFGRPLEE 747 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +R K + L Y GA +A G+D Q Sbjct: 748 VTVNERRAAKAINFGLMYGMGA---FGLARQLGIDRGQ 782 >gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614] gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614] Length = 889 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 30/175 (17%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H + L + ++RL + +LK V+ DGR+ T A+ TGR S Sbjct: 582 HPFLLHLLRHRDVSRLRQTIEGLLK------TVAGDGRIHTTFNQTIAA-TGRLSSTEPN 634 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P R+EE G I + ++ + L+ AD + IE Sbjct: 635 LQNIPI--RTEE-----------GRRIRE----------GFVVGPGYESLMTADYSQIEM 671 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A ++ +D I+AF +G D + T A+ F+ P D V+ E RA K M L Y Sbjct: 672 RIMAHLSEDDLLIEAFKSGRDFHSITAARVFDVPADDVTVEMRAKIKAMNYGLAY 726 >gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002] gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002] Length = 887 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G ++V AD + IE R++A ++ + + AFA+GEDI+ TT A+ F ++ Sbjct: 648 VREAFIAPPGHRIVSADYSQIELRIMAHLSDDANMLAAFASGEDIHKTTAAEVFGVTREQ 707 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 708 VTSEQRRAAKAINFGLIY 725 >gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A I+ ++ ++AFA GEDI+ T A+ F Sbjct: 678 IREAFIAPPGSVIVSADYSQIELRIMAHISEDENMLRAFAEGEDIHRATAAEIFGVARGD 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR KV+ L Y G F +A + G++ Sbjct: 738 VSSEQRRYAKVINFGLIY--GMSAFG-LAGNLGIE 769 >gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 874 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 26/174 (14%) Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 VR+ G L+ AD + IE R+LA ++G+ I AF +G+DI+ T A+ F P+ Sbjct: 633 AVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPL 692 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 D V+ EQR K + + Y G A+ G + ++ + TF D Sbjct: 693 DAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHGVRTFLDKIV 752 Query: 478 AESH--------------------HLWMQDQYPE-FAVKDKLIGTACELVKKAW 510 A++H +MQ + E A+ + GTA +L+K A Sbjct: 753 ADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIKIAM 806 >gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D] gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D] Length = 937 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 31/172 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ ++ ++AF G+D++ T A+ FN + Sbjct: 698 IREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLE 757 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL--------QQFSQNVKSTSTFEDW 475 V+ +QR + KV+ L Y G F +AS+ G+ + F++ + + E+ Sbjct: 758 VTPDQRRVAKVINFGLIY--GMSAFG-LASNLGIGRDAAKLYIDRYFARYPGAANYMEET 814 Query: 476 EQAESHH----------LWMQD---------QYPE-FAVKDKLIGTACELVK 507 Q+ H LW+ D Q E A+ + GTA +L+K Sbjct: 815 RQSAREHGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADLIK 866 >gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] Length = 904 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 41/186 (22%) Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 +E L+++L H ++T+L + L +AV +DGR+ T Q A+ Sbjct: 596 AETFLEALLRHRDVTRLRS---------------TVQGLQKAVDADGRIHTTYQQTIAA- 639 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P I T+ A +R + +G Sbjct: 640 TGRLSSVDPNLQNIP-------IRTE-----------------AGRRIREVFVVGSGFDH 675 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++G++ I+AF GED++ +K F ++V+ E RA K M Sbjct: 676 LMSADYSQIEMRIMAHLSGDEGLIEAFRAGEDLHRYVGSKVFQVAPEEVTAEMRAKVKAM 735 Query: 436 ELALGY 441 L Y Sbjct: 736 SYGLAY 741 >gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] Length = 845 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 79/308 (25%), Positives = 121/308 (39%), Gaps = 49/308 (15%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQ-TYALRMYLFLITG 250 + RG IDL+ + + + +E L +I L + +RSS+Q L L L TG Sbjct: 458 MEKRGLAIDLEAFRRFLDEVQEELDGLTHEIYDLAGQEFNLRSSQQMAQVLFGDLELPTG 517 Query: 251 IDLVDMSEGTLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 T +L H I ++ + L +L S+ L L + V RL Sbjct: 518 RKTPGGVPSTSSQVLEGLRNVHPIIPKILRFRTLEKLRST-----YLEPLPQKVDDTSRL 572 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 A+ TGR S QN+P RGE +R Sbjct: 573 HTHFNQL-ATATGRLSSSGPNLQNIP----------------IRGEF--------GPRMR 607 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 C +A G +LV AD + IE RVLA ++ + ++AF GEDI+ T A + + V Sbjct: 608 QCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIADEHVD 667 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL-------QQFSQNVKSTSTF-EDWEQ 477 E R K + L Y G + ++ G+ L Q++ ++ S F E E Sbjct: 668 SEARRQAKTINFGLLYGMGP---QKLSRELGISLNEAKTFIQRYFDRLQGVSAFYERIED 724 Query: 478 AESHHLWM 485 A H ++ Sbjct: 725 AAKQHGYV 732 >gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] Length = 930 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 550 LARQSAELGAELMKLEQEAYAAASQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 609 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 610 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 668 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 669 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 704 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 705 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 764 Query: 440 GYQGG 444 Y G Sbjct: 765 IYGMG 769 >gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4] gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4] Length = 914 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 39/181 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L + V+ DGR+ T A+ TGR Sbjct: 610 LEHLLAHRDATRLK---------------VTVDGLLKTVAEDGRIHTTFNQTVAA-TGRL 653 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + + G I D ++ L+ AD Sbjct: 654 SSTEPNLQNIPVR-------------TDAGRQIRD----------GFVVGEGYDSLLTAD 690 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I+AF GED++ A+AF PI++V+ E R K M L Sbjct: 691 YSQIEMRIMAHVSGDAGLIEAFNTGEDLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLA 750 Query: 441 Y 441 Y Sbjct: 751 Y 751 >gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99] gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99] Length = 917 Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GKK++ AD + IE R++A ++ + + AFA G+DI+ T A+ F+ D+ Sbjct: 677 IRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLLTAFAAGKDIHRATAAEVFDVDFDE 736 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 737 VTTEQRRRAKAVNFGLIY 754 >gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152] gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152] Length = 945 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 63/141 (44%), Gaps = 28/141 (19%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ T + TGR S QN+P R ER E Sbjct: 669 GRIH-TQYMQAVAATGRLSSNNPNLQNIPIRTERGRE----------------------- 704 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 VR + + L+ AD + IE R++A ++ E+ I AF NGEDI+ +T AK F Sbjct: 705 --VRKAFVPKDENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDIHASTAAKVFGVD 762 Query: 421 IDKVSKEQRAIGKVMELALGY 441 I+ V++EQR+ K + + Y Sbjct: 763 INDVTREQRSNAKTVNFGIVY 783 >gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236] gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236] Length = 932 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGMPLES 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTNEQRRSAKAINFGLIY 769 >gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91] gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91] Length = 906 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G ++ AD + IE R++A I+ + I+AF G+DI+ T A+ F + + Sbjct: 667 IREAFIAPSGWYIISADYSQIELRIMAHISQDAGLIRAFLGGQDIHSATAAEVFGISVGQ 726 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR KV+ L Y G F +A+ G+D Sbjct: 727 VNAEQRRYAKVINFGLIY--GMSEF-GLATQLGID 758 >gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256] gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256] Length = 952 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 82/195 (42%), Gaps = 34/195 (17%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + QLA D L ++ ++ KL + L E +S DGR+ T + TGR + Sbjct: 636 LEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASN 694 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R+ E VR A G +V AD + Sbjct: 695 NPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSADYSQ 730 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Y Sbjct: 731 IELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGM 790 Query: 444 GAKVFKTMASHCGLD 458 G +A G+D Sbjct: 791 GQ---YGLAKSLGID 802 >gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] Length = 910 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 96/233 (41%), Gaps = 49/233 (21%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +V+ DGR+ T Q A+ TGR S QN+P R+EE Sbjct: 625 LLRSVAPDGRIHTTFQQTIAA-TGRLSSADPNLQNIPI--RTEEGYR------------- 668 Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G + L+ AD + IE R++A ++G++ I+AF +GED++ Sbjct: 669 ---------IREGFVVGEGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVG 719 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ F P D+V+ R+ K M L Y G F GL +Q S +V T Sbjct: 720 SRVFGVPTDEVTSAMRSKIKAMSYGLAY--GLSAF-------GLS-KQLSIDVAEARTL- 768 Query: 474 DWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 M D + F V+D L G + + + G + DLT Sbjct: 769 -----------MDDYFDRFGGVRDYLSGVVAQARQVGYTETLMGRRRYLPDLT 810 >gi|269976594|ref|ZP_06183579.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935395|gb|EEZ91944.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 143 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 43/114 (37%), Positives = 56/114 (49%), Gaps = 14/114 (12%) Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHV 153 V A T GLP SLK+ LN KM+EGK LI FC +S P D Sbjct: 2 VWAATLGLPLSLKDVGKVLNLDAQ--KMDEGKDLIKHFCVPDDNSQRRLPSSDPA----- 54 Query: 154 QAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDL 205 W+LF Y RDV+ + ++L P+ + + + +DQ INDRG RID L Sbjct: 55 -GWKLFQSYNARDVQVETAIRQKLANFPVPEYVWEQYEVDQRINDRGIRIDTTL 107 >gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 923 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GK+++ AD + IE R++A ++ ++ ++AFA G+DI+ T A+ F+ + Sbjct: 683 IRQAFVAPEGKRILAADYSQIELRIMAHLSQDEGLLRAFAEGKDIHRATAAEVFDVAFET 742 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 743 VTSEQRRRAKAVNFGLIY 760 >gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996] gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996] Length = 933 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 31/181 (17%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + QLA D L ++ ++ KL + L E +S DGR+ T + TGR + Sbjct: 617 LEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASN 675 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R+ E VR A G +V AD + Sbjct: 676 NPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSADYSQ 711 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Y Sbjct: 712 IELRIMAHLSGDKTLIAAFQNGEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGM 771 Query: 444 G 444 G Sbjct: 772 G 772 >gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1] gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1] Length = 904 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +AS G +L+ AD + +E R++A ++G++ +AF GEDI+ T A+ F D+ Sbjct: 665 IRKAFVASPGHRLITADYSQVELRIMAHLSGDEGLRRAFEQGEDIHRATAAEVFAA--DE 722 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 723 VNDEQRRAAKAINFGLIY 740 >gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS] gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS] Length = 937 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G + AD + IE R++A I+G++ ++AF G D++ T A+ F + D+ Sbjct: 698 VREAFVAPAGSVIASADYSQIELRIMAHISGDESLLRAFTEGIDVHRATAAEVFGSTPDQ 757 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 758 VSSEQRRYAKVINFGLIY 775 >gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] Length = 934 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P+++ Sbjct: 695 IRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLLTAFAQGKDIHRATAAEVFGVPLEE 754 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 755 VTSDQRRSAKAINFGLIY 772 >gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] Length = 923 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 60/135 (44%), Gaps = 28/135 (20%) Query: 315 SRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 + TGR S QN+P R E +EI R I G Sbjct: 659 TTTGRLSSSNPNLQNIPVRNEEGKEI-------------------------RKAFIPEPG 693 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + AD + IE R++A ++G+ I+AF G DI+ T AK + P+++V++E+R+ K Sbjct: 694 CEFFSADYSQIELRIMAHLSGDPHMIEAFREGHDIHAATAAKVYKKPLEEVTREERSKAK 753 Query: 434 VMELALGYQGGAKVF 448 + Y G VF Sbjct: 754 TANFGIIY--GITVF 766 >gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 872 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 70/255 (27%), Positives = 103/255 (40%), Gaps = 34/255 (13%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGIDLVD 255 G +DLD + E +L D+ K G IRSS+Q L LF G+ Sbjct: 485 GIAVDLDAFAAFLREVQGELDRLTRDVYKAAGGEFNIRSSQQLAEL---LFGTLGLPTGG 541 Query: 256 MSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++G T + +L + D IL L L V GR+ T Sbjct: 542 KTKGGQTSTAQDVLEKLSGRHPVVDAILEFRKLEKLRSTYLEPLPRLVDGAGRIHTTFNQ 601 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A+ TGR S QN+P RG+ LG +R+C A+ Sbjct: 602 L-ATATGRLSSSNPNLQNIP----------------VRGD-----LGRR---MRTCFTAA 636 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G +LV AD + +E RVLA ++ + + AF G DI+ T + ++ D+VS +QR Sbjct: 637 PGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDVAQDQVSTDQRRN 696 Query: 432 GKVMELALGYQGGAK 446 K + L Y G + Sbjct: 697 AKTINFGLIYGMGPQ 711 >gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 958 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 578 LARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 637 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 638 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 696 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 697 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 732 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 733 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 792 Query: 440 GYQGG 444 Y G Sbjct: 793 IYGMG 797 >gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1] gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1] Length = 941 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 28/144 (19%) Query: 300 SSDGRLRGTL-QFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357 S G++ T QF A TGR S QN+P R ER EI Sbjct: 662 SKTGKIHTTYNQFVAA--TGRLSSINPNLQNIPIRTERGREIR----------------- 702 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 ++ + L+ AD + IE R++A +G++ I+AF NG DI+ TT AK F Sbjct: 703 -------KAFVPRDENHILLAADYSQIELRIMAAFSGDESMIEAFKNGRDIHATTAAKIF 755 Query: 418 NTPIDKVSKEQRAIGKVMELALGY 441 P+++V+ + R K + Y Sbjct: 756 QVPLEEVTSDMRRKAKTANFGIIY 779 >gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304] Length = 937 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 550 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 609 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 610 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 668 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 669 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 704 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 705 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 764 Query: 440 GYQGG 444 Y G Sbjct: 765 IYGMG 769 >gi|226323296|ref|ZP_03798814.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758] gi|225208486|gb|EEG90840.1| hypothetical protein COPCOM_01068 [Coprococcus comes ATCC 27758] Length = 162 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGG 444 RV+A +A E W+ + F NG DIY T+ ++ F+ P++K ++ R GK+ +LALGY G Sbjct: 35 RVIAHLARESWRAEVFKNGGDIYCTSASQMFHVPVEKHGINGHLRQKGKIADLALGYGGS 94 Query: 445 AKVFKTMAS 453 K M + Sbjct: 95 VGALKAMGA 103 >gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 919 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L +V+SDGR+ T A+ TGR Sbjct: 615 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 658 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A +R + +G +L+ A Sbjct: 659 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYAELMTA 694 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + I+AF GED++ ++AF PI++V+ E R K M L Sbjct: 695 DYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGL 754 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 755 AY--------------GLSAYGLSQQLK-ISTEEAKEQMDAY 781 >gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7] gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7] Length = 856 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 30/178 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 ++ L + V SDGR+ + +RTGR S QN+P R+E + R Sbjct: 569 VDGLLKEVESDGRVHSVFK-QTETRTGRISSTEPNMQNIPVRKE------------IGRN 615 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R +A G L+ AD + IE RVLA + G++ K F G DI+ Sbjct: 616 -------------MRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENMRKTFEEGTDIHA 662 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 T ++ F P D V E R+ K + + Y GA +++ G+ + + Q +K+ Sbjct: 663 MTASQVFGIPADMVLPEMRSAAKAVNFGIIYGIGA---FSLSKDIGVSVAEAKQYIKN 717 >gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40] gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40] Length = 926 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G ++V AD + IE R++A ++G++ AF G D++ T A+ F T ++ Sbjct: 687 VRKAFIAPEGYRIVAADYSQIELRIMAHLSGDEGLTNAFNQGLDVHSATAAEVFGTSVES 746 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 747 VTPEQRRSAKAINFGLIY 764 >gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451] gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451] Length = 938 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ PI++ Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS EQR K + L Y G F +A G+ Sbjct: 758 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 788 >gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551] gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551] Length = 946 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++G+D ++AF G+D++ T A+ F + Sbjct: 699 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 758 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ EQR KV+ L Y G F +AS+ G+ Sbjct: 759 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 789 >gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] Length = 858 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +I D LG +R +A G L+ AD + IE R+LA +A ED IKAF G DI+ Sbjct: 610 SIRDELGKE---IRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFNEGLDIHTK 666 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T FN ++V + +R I K + + Y Sbjct: 667 TATLIFNCSPEEVDEHKRRIAKTVNFGIVY 696 >gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b] gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b] Length = 928 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 25/174 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA K++V AD + IE R++A ++ + + AFA GEDI+ T ++ F + K Sbjct: 688 IRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLLAAFAQGEDIHRATASEVFGVALSK 747 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 VS EQR K + L Y G AK + + + ++ + + Sbjct: 748 VSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMEETREQ 807 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAWRA 512 + + + E + LW+ D A++ K + GTA +++K+A A Sbjct: 808 AAAKGYVETLDGRRLWLPDITSSNAIRRKAAERAAINAPMQGTAADIIKRAMIA 861 >gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] Length = 944 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++G+D ++AF G+D++ T A+ F + Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 756 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ EQR KV+ L Y G F +AS+ G+ Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 787 >gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1] gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1] Length = 932 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ D + IE R++A ++G+ + AF NG+DI+ T A+ ID+ Sbjct: 692 IRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDAFKNGKDIHAATAAEIIGVDIDQ 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTSEQRRRAKAINFGLIY 769 >gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603] gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603] Length = 938 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ PI++ Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS EQR K + L Y G F +A G+ Sbjct: 758 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 788 >gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] Length = 944 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++G+D ++AF G+D++ T A+ F + Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 756 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ EQR KV+ L Y G F +AS+ G+ Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 787 >gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223] gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223] Length = 890 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ PI++ Sbjct: 650 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 709 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS EQR K + L Y G F +A G+ Sbjct: 710 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 740 >gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104] gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104] Length = 913 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 96/222 (43%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L +V+SDGR+ T A+ TGR Sbjct: 609 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 652 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A +R + +G +L+ A Sbjct: 653 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYAELMTA 688 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + I+AF GED++ ++AF PI++V+ E R K M L Sbjct: 689 DYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGL 748 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 749 AY--------------GLSAYGLSQQLK-ISTEEAKEQMDAY 775 >gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957] gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957] Length = 960 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++G+D ++AF G+D++ T A+ F + Sbjct: 713 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFREGQDVHRATAAEVFGVTPLE 772 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ EQR KV+ L Y G F +AS+ G+ Sbjct: 773 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 803 >gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70] gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 930 Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + I AF G+DI+ +T A+ F P+ + Sbjct: 692 IRQAFIAPEGYQIMAADYSQIELRIMAHLSQDKGLINAFNEGKDIHRSTAAEIFGIPLAQ 751 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 752 VSSEQRRSAKAINFGLIY 769 >gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 883 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 14/163 (8%) Query: 331 PRQERSEEILTQTIQALNRGETIAD-----PLGLA-SDCVRSCIIASNGKKLVVADLAGI 384 P ER QTI A R + P+ L +R IA G LV +D + I Sbjct: 605 PNTERIHSSFNQTIAATGRISSTEPNLQNIPVRLEIGRNLRKAFIARQGCVLVDSDYSQI 664 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA I+ E+ I+AF+ DI+ T ++ F I +V+KEQR K + + Y G Sbjct: 665 ELRVLAHISDEEALIQAFSKDADIHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVY--G 722 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 F ++++ G+ ++ Q +K + + ++ E +MQD Sbjct: 723 ISDF-GLSNNLGITKKKAGQYIK--TYLDRYKNIEK---YMQD 759 >gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114] gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114] Length = 935 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 555 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 614 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 615 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 673 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 674 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 709 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 710 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 769 Query: 440 GYQGG 444 Y G Sbjct: 770 IYGMG 774 >gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110] gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110] Length = 940 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G + AD + IE R++A I+G++ ++AF G D++ T A+ F D+ Sbjct: 701 VREAFIAPPGSVIASADYSQIELRIMAHISGDESLLRAFREGIDVHRATAAEVFGATPDQ 760 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 761 VSSEQRRYAKVINFGLIY 778 >gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1] gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1] Length = 986 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351 + L+ + DGR+ GT + TGR S QN+P R E EI Sbjct: 701 DGLAGYIREDGRIHGTFN-QTITATGRLSSTEPNLQNIPVRMELGREI------------ 747 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 R + G V AD + IE RVLA ++G++ I+A+ EDI+ Sbjct: 748 -------------RRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAI 794 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+ P+++V+ QR K + + Y Sbjct: 795 TASEVFHVPLEEVTPLQRRNAKAVNFGIVY 824 >gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102] gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102] Length = 930 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 31/181 (17%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + QLA D L ++ ++ KL + L E +S DGR+ T + TGR + Sbjct: 615 LEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASN 673 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R+ E VR A G +V AD + Sbjct: 674 NPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSIIVSADYSQ 709 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Y Sbjct: 710 IELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGM 769 Query: 444 G 444 G Sbjct: 770 G 770 >gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004] gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 932 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ + ++AFA G+DI+ T A+ F P+++ Sbjct: 693 IRQAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLEAFAQGKDIHSATAAEVFGVPLEE 752 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 753 VTSEQRRSAKAINFGLIY 770 >gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114] gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114] Length = 925 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 101/413 (24%), Positives = 179/413 (43%), Gaps = 80/413 (19%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L YL DETV V N ++ +F K GI++ K + T +L+ + L + + L L Sbjct: 399 LKPYLEDETVKKVGQNIKYDLKIFLK-YGIEL--KSFEDTMLLSYS--LDAGVNRHNLDL 453 Query: 117 NFSEHL----TKMEE----GKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRD 166 HL K ++ GK+ + F + ID+ Y C A+ ++ + LF + + Sbjct: 454 LAKTHLDHDNIKFKDVVGTGKSEVT-FDEVLIDNAYRYACEDADVTLKLYNLFKDRIVK- 511 Query: 167 VEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E ++++ L IPL D +L + N+ G +ID ++ KL + + K L++ I Sbjct: 512 -EKCFQIYETLEIPLVD------VLARMENN-GIKIDQVILKKLSNSFSADLKTLEKKIY 563 Query: 226 KLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 KL+ + I S++Q + I+G ++ T K + +N+ +L LA Sbjct: 564 KLSGEEFNIASTKQLGDILYEKLKISG------TKKTKKGNFA-TNVN------VLEDLA 610 Query: 284 SSGSAILKL---------------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 S G+ KL ++L E + + + T A+ TGR + Q Sbjct: 611 SKGNEFPKLVLEWRQKSKLKNTYTDSLPEYIDKNTKRIHTSFLLAATSTGRLASADPNLQ 670 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + + ++ +RS ++ G ++ AD + IE RV Sbjct: 671 NIPIKSKEGKL------------------------IRSAFVSEKGSSIISADYSQIEMRV 706 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 LA +A KAF N EDI+ T ++ F I K++++ R K + + Y Sbjct: 707 LAHVADVKELKKAFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIY 759 >gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c] gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c] Length = 971 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ ++ + L+ AD + IE R++A ++G+ I+AFA+GED++ A+AFN P+ +V Sbjct: 732 RAFVVGPGYETLLTADYSQIEMRIMAHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEV 791 Query: 425 SKEQRAIGKVMELALGY 441 E R K M L Y Sbjct: 792 DPELRRRIKAMSYGLAY 808 >gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573] gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573] Length = 938 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ PI++ Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS EQR K + L Y G F +A G+ Sbjct: 758 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 788 >gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] Length = 879 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V DGR+ T AS TGR S QN+P R+E Sbjct: 593 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE-------------- 635 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS I +G +L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 636 --------AGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLHN 687 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K M L Y Sbjct: 688 YVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 718 >gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442] gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442] Length = 930 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 41/259 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQQAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 765 Query: 440 GYQGGAKVFKTMASHCGLD 458 Y G +A G+D Sbjct: 766 IYGMGQ---YGLAKSLGID 781 >gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491] gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491] Length = 938 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 765 Query: 440 GYQGG 444 Y G Sbjct: 766 IYGMG 770 >gi|297565778|ref|YP_003684750.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] gi|296850227|gb|ADH63242.1| DNA-directed DNA polymerase [Meiothermus silvanus DSM 9946] Length = 682 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 61/213 (28%), Positives = 93/213 (43%), Gaps = 40/213 (18%) Query: 250 GIDLVDMSEGTLKSILSHSNITQL-AKDLILNRLASSGSAILK-LNTLSEAVSSDGRLRG 307 GI+L D E TL H + L A R ++ G+A L+ L+ L+ GR+ Sbjct: 365 GIELSDTREETLSRHREHPTVAALLAYREHRKRQSTYGAAWLENLHPLT------GRIHP 418 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + Q GA +GR S Q +PR+ R+C Sbjct: 419 SWQQIGAE-SGRMSCSRPNLQQVPRE----------------------------PAYRAC 449 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 A G+ L+ AD + IE R+ A IAGE ++AF GED++ T T + S+E Sbjct: 450 FQAPGGRVLIKADYSQIELRLAAQIAGEKRMLEAFEQGEDLHTLT--ARLVTGKAEPSRE 507 Query: 428 QRAIGKVMELALGYQGGAKVFKTMA-SHCGLDL 459 R + K + L Y G++ +T A ++ GL+L Sbjct: 508 DRQLAKALNFGLLYGMGSEGLRTYARANYGLEL 540 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 71/150 (47%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L ++VS DGR+ T A+ TGR S QN+P R+EE G Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-----------GR 656 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I R+ ++ + L+ AD + IE R++A ++ +D I AF +G D + Sbjct: 657 RIR----------RAFVVGEGYECLLTADYSQIEMRIMAHLSADDVLIDAFNSGRDFHAA 706 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F P+++V+ +QR K M L Y Sbjct: 707 TASSVFQVPVEEVTTDQRRKIKAMNYGLAY 736 >gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1] gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1] Length = 869 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 109/470 (23%), Positives = 196/470 (41%), Gaps = 88/470 (18%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 + YA ++ + E + D L YL+DE ++N + +IL + GIDI Sbjct: 329 VLGYALYNKEQAFYISFEDALNDQDFLNYLKDEKYSKYSYN-IKAQILSARWNGIDIKGM 387 Query: 92 RW---ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + + +L + L +K+ C ++ + EE + + K I P D Sbjct: 388 NFDLQLASYILNPS--LKDEMKSICDYYDYDS--VQYEE--EVFGKLAKKHI--PEIDLL 439 Query: 149 RANHVQA----WQLFGEYCKR-DVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRID 202 + V + L E +R E +L++ L +P++ D+ + G +ID Sbjct: 440 ARHTVSKAKAIYDLKDEAIQRLKDEEQFDLYQNLELPVTYILADMEYV-------GAKID 492 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGI--------- 251 + ++ +++ Q+ K+++EDI L D I S +Q L LF G+ Sbjct: 493 IHVLKEMEMDFEQQIKQIEEDIYMLADKEFNISSPKQ---LGEVLFERLGLPNGKKTKTG 549 Query: 252 -----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 D+++ EG H I + K +L +L+S+ + L E V +DG++ Sbjct: 550 YSTSQDILEKIEGL------HPIIPLIQKYRMLTKLSST-----YVKGLQEQVFADGKIH 598 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T+ ++TGR S QN+P RQE + +R Sbjct: 599 -TIYNQALTQTGRLSSIEPNLQNIPVRQEEGK-------------------------LIR 632 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 I S+ LV D + IE R+LA +AG I+AF +DI+ T A F ++V+ Sbjct: 633 KAFIPSHDY-LVTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVT 691 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 R K + + Y G FK ++ G+ L++ + ++ FE++ Sbjct: 692 ANMRRQAKAVNFGIIY--GMGEFK-LSQQIGVSLKEAKEFIR--RYFEEY 736 >gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10] Length = 986 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351 + L+ + DGR+ GT + TGR S QN+P R E EI Sbjct: 701 DGLAGYIREDGRIHGTFN-QTITATGRLSSTEPNLQNIPVRMELGREI------------ 747 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 R + G V AD + IE RVLA ++G++ I+A+ EDI+ Sbjct: 748 -------------RRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAI 794 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+ P+++V+ QR K + + Y Sbjct: 795 TASEVFHVPLEEVTPLQRRNAKAVNFGIVY 824 >gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1] gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1] Length = 916 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/203 (26%), Positives = 85/203 (41%), Gaps = 33/203 (16%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA+D L RL ++ KL + L E + GR+ T + TGR S Sbjct: 603 LQELAQDYELPRLIMEHRSLSKLKSTYTDKLPEMIQKTGRIH-TSYHQAITATGRLSSTD 661 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P RS E +R IA G KLV AD + + Sbjct: 662 PNLQNIPI--RSAE----------------------GRRIRQAFIAPKGYKLVAADYSQV 697 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A ++ + + AF D++ T A+ F +D+V+ EQR K + L Y G Sbjct: 698 ELRIMAHLSQDSGLLDAFTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIY--G 755 Query: 445 AKVFKTMASHCGLDLQQFSQNVK 467 F +A G+ + + +K Sbjct: 756 MSAF-GLAKQLGIGRPEAGKYIK 777 >gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus] Length = 889 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V DGR+ T AS TGR S QN+P R+E Sbjct: 603 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE-------------- 645 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS I +G +L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 646 --------AGRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLHN 697 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K M L Y Sbjct: 698 YVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 728 >gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] Length = 929 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 549 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 608 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 609 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 667 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 668 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 703 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 704 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 763 Query: 440 GYQGG 444 Y G Sbjct: 764 IYGMG 768 >gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586] gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586] Length = 938 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ PI++ Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 758 VSSEQRRRAKAVNFGLIY 775 >gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341] gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341] Length = 938 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ PI++ Sbjct: 698 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQ 757 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS EQR K + L Y G F +A G+ Sbjct: 758 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 788 >gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] Length = 928 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 548 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 607 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 608 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 666 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 667 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 702 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 703 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 762 Query: 440 GYQGG 444 Y G Sbjct: 763 IYGMG 767 >gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] Length = 931 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 90/206 (43%), Gaps = 38/206 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ I++ Sbjct: 691 IRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIIGVDIEQ 750 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQ-----FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + QQ F + ED Sbjct: 751 VSAEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQQYMDTYFERYPGVMQYMEDT 807 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA------ 509 A + +++ + PE A+ + GTA +++KKA Sbjct: 808 RSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDE 867 Query: 510 W-RAKHQGVLQLWKDLTEGFACVVQE 534 W ++ QG ++L + + VQE Sbjct: 868 WIESQGQGRVKLLMQVHDELVFEVQE 893 >gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594] Length = 938 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 108/259 (41%), Gaps = 41/259 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 551 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 610 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 611 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 669 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 670 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 705 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 706 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGL 765 Query: 440 GYQGGAKVFKTMASHCGLD 458 Y G +A G+D Sbjct: 766 IYGMGQ---YGLAKSLGID 781 >gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1] gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1] Length = 928 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 121/299 (40%), Gaps = 44/299 (14%) Query: 160 GEYCKRDVEATRELF--------KRLIPLS---DGERDLWLLDQTINDRGYRIDLDLVLK 208 G Y D + T +L KR PL+ + E L + I G +ID ++ K Sbjct: 495 GRYAAEDADVTLQLHLKMWPKLQKREGPLNVFRNIEMPLVPVLSRIERNGVKIDPQVLQK 554 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 E I +L++ + S T L+ LF GI + + G S S Sbjct: 555 HSEEITLRLAELEQKAHDIAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 612 Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322 + +LA D L ++ + KL +T ++ + GR+ T + TGR S Sbjct: 613 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 671 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R+EE +R IA +V AD + Sbjct: 672 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYLIVSADYS 707 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + +KAFA G+DI+ T A+ F P++ VS EQR K + L Y Sbjct: 708 QIELRIMAHLSRDKGLLKAFAEGKDIHRATAAEVFGLPLESVSAEQRRSAKAINFGLIY 766 >gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946] gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946] Length = 929 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 131/309 (42%), Gaps = 58/309 (18%) Query: 146 DCTRANHVQAW-QLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTI-----NDRG 198 D T H++ W +L E ++V E+ L+P +S ER+ L+DQ+I + G Sbjct: 503 DVTLQLHLKMWPELEKEQGPKNVFEQVEM--PLVPVISRIERNGVLIDQSILAVHSQELG 560 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 R+ +L LK EL + + S +Q L+ LF GI + Sbjct: 561 SRL-AELELKAHELAGEPFN-------------LSSPKQ---LQTILFEKQGIKPTKKTP 603 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFY 312 G S S + +LA D L ++ + KL +T ++ + GR+ T Sbjct: 604 GGAPST-SEEVLAELALDYPLPKVILEHRGLAKLKSTYTDKLPLMINPHSGRVH-TSYHQ 661 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P R++E +R IA Sbjct: 662 TVTATGRLSSSDPNLQNIPV--RNDE----------------------GRRIRQAFIAPQ 697 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G +++ AD + IE R++A ++ + + AFA+ +DI+ T A+ F +DKVS EQR Sbjct: 698 GHRILAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDKVSGEQRRSA 757 Query: 433 KVMELALGY 441 K + L Y Sbjct: 758 KAINFGLIY 766 >gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568] Length = 937 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 64/245 (26%), Positives = 103/245 (42%), Gaps = 38/245 (15%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILS 266 +A++ +L +++KL ++ Q + L+ LF GI + + I + Sbjct: 550 LARQSAELGAELMKLEQEAYAAAGQPFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGIST 609 Query: 267 HSNI-TQLAKDLILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGR 319 + + QLA D L ++ ++ KL + L E +S DGR+ T + TGR Sbjct: 610 NEAVLEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGR 668 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P R+ E VR A G +V A Sbjct: 669 LASNNPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSA 704 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Sbjct: 705 DYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGL 764 Query: 440 GYQGG 444 Y G Sbjct: 765 IYGMG 769 >gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS] gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS] Length = 920 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 41/182 (22%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L +V+SDGR+ T A+ TGR Sbjct: 616 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 659 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A +R + +G +++ A Sbjct: 660 SSTEPNLQNIP-------IRTE-----------------AGRRIRDAFVVGDGYTEVMTA 695 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + I+AF GED++ ++AF+ PID+V+ + R K M L Sbjct: 696 DYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMSYGL 755 Query: 440 GY 441 Y Sbjct: 756 AY 757 >gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158] Length = 891 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA+ +DI+ T A+ F +DK Sbjct: 651 IRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVALDK 710 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 711 VSGEQRRSAKAINFGLIY 728 >gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] Length = 882 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V DGR+ T AS TGR S QN+P R+E Sbjct: 596 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE-------------- 638 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS I +G +L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 639 --------AGRQIRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLHN 690 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K M L Y Sbjct: 691 YVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 721 >gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710] gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579] gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149] gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33] Length = 929 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 53/181 (29%), Positives = 77/181 (42%), Gaps = 31/181 (17%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + QLA D L ++ ++ KL + L E +S DGR+ T + TGR + Sbjct: 614 LEQLAPDYPLPKIILQNRSLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASN 672 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R+ E VR A G +V AD + Sbjct: 673 NPNLQNIPI--RTAE----------------------GRRVRRAFTAPQGSVIVSADYSQ 708 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G+ I AF NGED++ T A+ F + VS EQR K + L Y Sbjct: 709 IELRIMAHLSGDKTLITAFQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGM 768 Query: 444 G 444 G Sbjct: 769 G 769 >gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] Length = 1003 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 68/148 (45%), Gaps = 20/148 (13%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L +A + DGR+ T Q GA+ TGR S QN+P R E I RG I Sbjct: 712 LQKAAADDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRTEEGRRI---------RGAFI 761 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 P + + + L+ AD + IE R++ +A ++ I A+ GED++ Sbjct: 762 VAP---------APVDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHRYVG 812 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F ++V+ EQR+ K M L Y Sbjct: 813 SEVFGVAPEEVTPEQRSKVKAMSYGLAY 840 >gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1] gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1] Length = 943 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 45/66 (68%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++ ED ++AF +G DI+ +T ++ FN P+++V++EQR+ K + Sbjct: 716 LLAADYSQIELRIIAALSKEDTMMQAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTV 775 Query: 436 ELALGY 441 + Y Sbjct: 776 NFGIIY 781 >gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] Length = 885 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 69/158 (43%), Gaps = 28/158 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L +AV DGR+ T Q + TGR S QN+P Sbjct: 597 LEGLIKAVGDDGRIHTTFQ-QTMTSTGRLSSTDPNLQNIP-------------------- 635 Query: 352 TIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 I P G +RS + +N + L+ AD + IE RV+A ++ + I A+ NGED++ Sbjct: 636 -IRTPAG---KKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNGEDLHN 691 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 AK F+ P V+ E R KV L+ G G F Sbjct: 692 YVGAKVFDVPPSGVTPELRR--KVKALSYGLVYGLSAF 727 >gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont] Length = 929 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA K++V AD + IE R++A ++ + + AFA GEDI+ T ++ F + K Sbjct: 689 IRQAFIAGADKRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALSK 748 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 749 VSGEQRRSAKAINFGLIY 766 >gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] Length = 859 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L EAV DGR+ T GA+ TGR S QN+P R++ Sbjct: 571 IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPV--RTD-------------- 613 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +R+ G + L+ AD + IE RV+A ++ + I+A+A+GED++ Sbjct: 614 --------AGRKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLHN 665 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K + L Y Sbjct: 666 YVGSRVFDVPVDEVTPELRRRVKALSYGLVY 696 >gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2] gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2] Length = 907 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 5/96 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF-NTPID 422 +R IA +G +V AD + IE R++A ++G+ ++AFA ED++ T A+ F TP+D Sbjct: 668 IREAFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFAKNEDVHRATAAEIFMTTPVD 727 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR KV+ L Y G F +A G++ Sbjct: 728 -VTTEQRRYAKVINFGLIY--GMSAFG-LAKQLGIE 759 >gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK] gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK] Length = 922 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ PI+ Sbjct: 682 IRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPIES 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ EQR K + L Y G F +A G+ Sbjct: 742 VTTEQRRRAKAINFGLIY--GMSAFG-LAKQLGM 772 >gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] Length = 937 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 38/182 (20%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+++++H + T+L + + L E V+ DGR+ T A+ TGR Sbjct: 630 LENLMAHRDATKLRQ---------------TVEGLLETVAPDGRIHTTYSQTAAA-TGRL 673 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R E I RG +AD +A L+ A Sbjct: 674 SSLHPNLQNIPVRTEAGRRI---------RGVFVADE------------VAGEQAVLLSA 712 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++ F D+V+ EQRA K M L Sbjct: 713 DYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGL 772 Query: 440 GY 441 Y Sbjct: 773 AY 774 >gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] Length = 941 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 29/163 (17%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L++L S+ + L+ + +E GR+ + GA+ TGR S QN+P R++E Sbjct: 645 LSKLKSTYTDALQTHINAET----GRVHTSYSITGAN-TGRLSSTDPNLQNIPI--RTDE 697 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G I R IA GK LV D + IE R+LA +A D Sbjct: 698 -----------GRKI-----------REAFIADEGKVLVALDYSQIELRILAHVANIDAL 735 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +AF +G DI+ T ++ FN P+D+++ + R K + + Y Sbjct: 736 KQAFRDGHDIHAMTASEMFNVPLDEMTPDVRRQAKAINFGVIY 778 >gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6] Length = 861 Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 32/164 (19%) Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILT 341 A KLN+ L + ++ DGR+ A RTGR S QN+P R E ++ Sbjct: 566 AYQKLNSTYVEGLLKVIAEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIPIRTELGSQL-- 622 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 R+ +A G LV AD + IE R+LA + G++ +A Sbjct: 623 -----------------------RAYFVARPGCVLVDADYSQIELRILAHVTGDEHMQQA 659 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 F GEDI+ +T AK + P+++V+ R+ K + + Y GA Sbjct: 660 FLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAINFGIMYGKGA 703 >gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] Length = 915 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 55/95 (57%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G ++ AD + IE R++A I+ ++ ++AF+ G D++ T A+ F P+ + Sbjct: 676 VRRAFVAPPGHVILSADYSQIELRIMAHISEDEGLLRAFSEGLDVHRATAAEVFGMPLAE 735 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR KV+ L Y GA +A++ G++ Sbjct: 736 VTSEQRRYAKVINFGLIYGMGA---YGLAANLGIE 767 >gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 874 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 47/174 (27%), Positives = 74/174 (42%), Gaps = 26/174 (14%) Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 VR+ G L+ AD + IE R+LA ++G+ I AF G+DI+ T A+ F P+ Sbjct: 633 AVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLIDAFRQGQDIHARTAAEVFGVPL 692 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 D V+ EQR K + + Y G A+ G + ++ + TF D Sbjct: 693 DAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREAGGYIDRYFERYHGVRTFLDKIV 752 Query: 478 AESH--------------------HLWMQDQYPE-FAVKDKLIGTACELVKKAW 510 A++H +MQ + E A+ + GTA +L+K A Sbjct: 753 ADAHANGYVTTLYGRRRALPALASRNYMQRSFAERMAMNTPIQGTAADLIKIAM 806 >gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] Length = 929 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ + + AFA+ +DI+ T A+ F +DK Sbjct: 689 IRQAFIAPPGYRIVAADYSQIELRIMAHLSQDKGLLSAFASEQDIHRATAAEVFGVSLDK 748 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 749 VSGEQRRSAKAINFGLIY 766 >gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 930 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%) Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208 G Y D + T +L ++ P L E L + + G +ID ++ Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHA 556 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + IAQ +L++ ++ S T L+ LF GI + + G S S Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614 Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322 + +LA D L ++ + KL +T ++ + GR+ T + TGR S Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R+EE +R IA +V AD + Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 710 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768 >gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685] gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685] Length = 930 Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 43/81 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF NGED++ T A+ F + Sbjct: 689 VRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQNGEDVHRRTAAEVFGIAPEN 748 Query: 424 VSKEQRAIGKVMELALGYQGG 444 VS EQR K + L Y G Sbjct: 749 VSPEQRRYAKTINFGLIYGMG 769 >gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179] Length = 925 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 24/125 (19%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P RSEE +R IA G K+ Sbjct: 664 TGRLSSSDPNLQNIPT--RSEE----------------------GRKIRQAFIAPQGFKV 699 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD + IE R++A ++ + AF++G D++ +T A+ F+ P+++V+ +QR K + Sbjct: 700 VAADYSQIELRIMAHLSADAGLAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAIN 759 Query: 437 LALGY 441 L Y Sbjct: 760 FGLIY 764 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A I+ + I+AF N D++ T + FN PI++ Sbjct: 677 IRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSLIEAFNNDVDVHSATASMMFNVPIEE 736 Query: 424 VSKEQRAIGKVMELALGY 441 V+K+ R K + L Y Sbjct: 737 VNKDHRRNAKAINFGLIY 754 >gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 927 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%) Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208 G Y D + T +L ++ P L E L + + G +ID ++ Sbjct: 494 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHA 553 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + IAQ +L++ ++ S T L+ LF GI + + G S S Sbjct: 554 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 611 Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322 + +LA D L ++ + KL +T ++ + GR+ T + TGR S Sbjct: 612 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 670 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R+EE +R IA +V AD + Sbjct: 671 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 706 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 707 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 765 >gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603] gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603] Length = 893 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L ++V+ DGR+ T Q A+ TGR S QN+P I T+T + + +G + Sbjct: 608 LLKSVADDGRVHTTFQQTVAA-TGRLSSTDPNLQNIP-------IRTETGRRIRQGFVVG 659 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 + L L+ AD + IE R++A ++ +D I AF GED++ A Sbjct: 660 EGL----------------DTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNFVGA 703 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F ID+V+ + R+ K M L Y Sbjct: 704 RVFGVSIDEVTPQMRSKVKAMSYGLAY 730 >gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus] Length = 924 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G KL+ AD IE R+LA ++G++ +AF G+DI+ T A+ F P ++ Sbjct: 684 IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQ 743 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K++ + Y Sbjct: 744 VTPEQRRRAKMVNYGIPY 761 >gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92] gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92] Length = 922 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++ + + AF+ G DI+ T A+ F +D+ Sbjct: 683 IRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAFSKGADIHRATAAEVFKVELDQ 742 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 VS +QR K + L Y G F +A G+ + +Q ++ Sbjct: 743 VSDDQRRSAKAINFGLIY--GMSAF-GLAKQLGIARKDAAQYIE 783 >gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] Length = 930 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%) Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208 G Y D + T +L ++ P L E L + + G +ID ++ Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHA 556 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + IAQ +L++ ++ S T L+ LF GI + + G S S Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614 Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322 + +LA D L ++ + KL +T ++ + GR+ T + TGR S Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R+EE +R IA +V AD + Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 710 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768 >gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999] Length = 931 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G K+V AD + IE R++A ++ + + AFANG D++ T ++ F ++ Sbjct: 691 VREAFIARPGYKIVAADYSQIELRIMAHLSSDSGLLHAFANGLDVHKATASEVFGVALEH 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 751 VTSEQRRSSKAINFGLIY 768 >gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518'] Length = 924 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G KL+ AD IE R+LA ++G++ +AF G+DI+ T A+ F P ++ Sbjct: 684 IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQ 743 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K++ + Y Sbjct: 744 VTPEQRRRAKMVNYGIPY 761 >gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9] gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9] Length = 937 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ PI+ Sbjct: 697 IRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALLEAFKQGKDIHAATAAEILGLPIES 756 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 757 VTTEQRRRAKAINFGLIY 774 >gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 930 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%) Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208 G Y D + T +L ++ P L E L + + G +ID ++ Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHA 556 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + IAQ +L++ ++ S T L+ LF GI + + G S S Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614 Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322 + +LA D L ++ + KL +T ++ + GR+ T + TGR S Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R+EE +R IA +V AD + Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 710 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768 >gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS] gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS] Length = 929 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 38/185 (20%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L +V+SDGR+ T A+ TGR Sbjct: 616 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 659 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG----KKL 376 S QN+P I T+ G I D V S S G +L Sbjct: 660 SSTEPNLQNIP-------IRTEA------GRRIRDAF-----VVESRPPGSGGGAVFTEL 701 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R++A ++ + I+AF GED++ ++AF+ PID+V+ + R K M Sbjct: 702 MTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVPIDEVTPDLRRRVKAMS 761 Query: 437 LALGY 441 L Y Sbjct: 762 YGLAY 766 >gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411] gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411] Length = 859 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L EAV DGR+ T GA+ TGR S QN+P + Sbjct: 571 IDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRTD---------------- 613 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +R+ G + L+ AD + IE RV+A ++ + I+A+A+GED++ Sbjct: 614 --------AGRKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLHN 665 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K + L Y Sbjct: 666 YVGSRVFDVPVDEVTPELRRRVKALSYGLVY 696 >gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833] gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833] Length = 893 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + ++ DGR+ T A+ TGR S QN+P I T + + +G Sbjct: 610 LIKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIP-------IRTAEGRRIRKG---- 657 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 I+ + L+ AD + IE R++A ++G++ I AF +G D + T A Sbjct: 658 ------------FIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQATAA 705 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F P D+V+ E RA K M L Y Sbjct: 706 RVFGLPPDQVTPELRARIKAMNYGLAY 732 >gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17] gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17] Length = 926 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A ++ + + AFA GEDI+ T A+ F +++ Sbjct: 686 IRQAFVAEKGYKLLAADYSQIELRIMAHLSEDKGLLTAFAKGEDIHKATAAEVFGVTLEE 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VNTDQRRSAKAINFGLIY 763 >gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22] gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22] Length = 930 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 44/299 (14%) Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208 G Y D + T +L ++ P L E L + + G +ID ++ Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHA 556 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + IAQ +L++ ++ S T L+ LF GI + + G S S Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614 Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322 + +LA D L ++ + KL +T ++ + GR+ T + TGR S Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R+EE +R IA +V AD + Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + + AFA G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 710 QIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768 >gi|297626697|ref|YP_003688460.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++TL ++ S DGR+ T + TGR S QN+P Sbjct: 604 IDTLIKSTSDDGRIH-TTYVQTVAGTGRLSSTDPNLQNIP-------------------- 642 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 I P G +R + G + L+ AD + IE RV+A +G+ I AFA+G D + Sbjct: 643 -IRTPEGRR---IRDAFVPGEGFEGLMSADYSQIEMRVMAAASGDKTLIHAFASGADFHS 698 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F+ P+++V+ QR+ K M L Y Sbjct: 699 MTASHVFDVPVEQVTPAQRSSVKQMNYGLAY 729 >gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] Length = 903 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +LV AD + IE R++A ++ ++ + AF EDI+ T + F TP++ Sbjct: 664 IRQAFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEAEEDIHQRTATEIFRTPLED 723 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 724 VTPEQRRSAKAINFGLIY 741 >gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] Length = 930 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G +V AD + IE R++A ++ + I AF+ G+DI+ +T A+ F P+++ Sbjct: 692 IRQAFIPREGFTMVAADYSQIELRIMAHLSKDQGLINAFSEGKDIHRSTAAEIFGLPLEQ 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTSEQRRSAKAINFGLIY 769 >gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] Length = 897 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 95/209 (45%), Gaps = 34/209 (16%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 LK +L H + T+L R+ G L + V+ D R+ T A+ TGR Sbjct: 583 LKHLLEHRDATRL-------RVTVEG--------LQKTVADDQRIHTTFNQTVAA-TGRL 626 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R E +I + A P+ + S + + L+ A Sbjct: 627 SSTDPNLQNIPVRTEAGRQIRHAFVVA-------PGPVAVGSGNIEF-------ESLMTA 672 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++AF P+D+V + R+ K M L Sbjct: 673 DYSQIEMRIMAHLSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGL 732 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y G + +A+ G+ ++ Q +++ Sbjct: 733 AY--GLSAYG-LAAQLGISREEAKQQMEA 758 >gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] Length = 909 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 94/221 (42%), Gaps = 54/221 (24%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L +V++DGR+ T A+ TGR Sbjct: 605 LQHLLAHRDATRLK---------------VTVDGLLNSVAADGRIHTTFNQTIAA-TGRL 648 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I T+ G I D ++ L+ AD Sbjct: 649 SSTEPNLQNIP-------IRTEA------GRRIRD----------GFVVGEGYADLMTAD 685 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + I+AF GED++ ++AF+ P+D+V+ E R K M L Sbjct: 686 YSQIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYGLA 745 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ E + Sbjct: 746 Y--------------GLSAYGLSQQLK-ISTEEAKEQMEQY 771 >gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252] gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252] Length = 924 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G KL+ AD IE R+LA ++G++ +AF G+DI+ T A+ F P ++ Sbjct: 684 IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAFLEGQDIHTATAARVFKVPPEQ 743 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K++ + Y Sbjct: 744 VTPEQRRRAKMVNYGIPY 761 >gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01] gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01] Length = 937 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 52/206 (25%), Positives = 89/206 (43%), Gaps = 38/206 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ ID+ Sbjct: 697 IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVAIDQ 756 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 V+ EQR K + L Y G F +A G+ + F + ED Sbjct: 757 VTTEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDT 813 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA------ 509 A S +++ Y PE A+ + GTA +++KKA Sbjct: 814 RSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDE 873 Query: 510 W-RAKHQGVLQLWKDLTEGFACVVQE 534 W +A+ G ++L + + VQE Sbjct: 874 WIQAEGDGRVKLLMQVHDELVFEVQE 899 >gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] Length = 917 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 29/157 (18%) Query: 328 QNLPRQERSEEILTQTIQALNRGETIADP----------LGLASDCVRSCIIASN--GKK 375 Q P+ R I QT+ A R + +DP LGLA VR IA N G + Sbjct: 619 QVHPQTGRVHTIFHQTVAATGRLSS-SDPNLQNIPARGELGLA---VRRAFIADNRPGYR 674 Query: 376 -------LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 L+ D + IE R++A + + ++AFA G+DI+ T ++ F P+D V+ E Sbjct: 675 IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEM 734 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQF 462 R I KV+ + Y G + + +A G+ D Q+F Sbjct: 735 RRIAKVVNFGIMY--GMQAYG-LARDTGMSRQDAQRF 768 >gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] Length = 972 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA+ G L+ AD + IE RVLA I G+ I+ F G DI+ T A+ F + Sbjct: 727 VRRGFIAAPGHVLIAADYSQIELRVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNA 786 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V K QR I K + + Y G F +A G+ +Q Sbjct: 787 VDKNQRRIAKTVVFGVIY--GISPFG-LAQRLGISREQ 821 >gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149] gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149] Length = 902 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L ++VS DGR+ T + A+ TGR S QN+P R+EE G Sbjct: 614 VDGLLKSVSEDGRIHTTFKQTVAA-TGRLSSTDPNLQNIPI--RTEE-----------GR 659 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I R+ ++ + L+ AD + IE R++A ++ +D I+AF +G D + Sbjct: 660 RIR----------RAFVVGKGFECLLTADYSQIEMRIMAHLSSDDKLIEAFNSGHDFHAA 709 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F P+ +V+ +QR K M L Y Sbjct: 710 TASSVFGVPVAEVTADQRRKIKAMNYGLAY 739 >gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9] gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9] Length = 932 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G +V AD + IE R++A ++G+ I AF G DI+ T ++ F P++ Sbjct: 693 VREAFVAPAGSCIVSADYSQIELRIMAHLSGDAGLIAAFREGRDIHRATASEVFGVPLEA 752 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 753 VSAEQRRYAKTINFGLIY 770 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + + D GR+ + GAS TGR+S QN+P RSEE Sbjct: 647 DALQDHIDPDTGRVHTSYLQTGAS-TGRFSSSDPNLQNIPV--RSEE------------- 690 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A+ G +LV D + IE R+LA +AG + +AF +G DI+ Sbjct: 691 ---------GRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLKQAFRDGHDIHAM 741 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P+ +++ E R K + + Y Sbjct: 742 TASEMFNVPLAEMTPEIRRQAKAINFGVIY 771 >gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 29/157 (18%) Query: 328 QNLPRQERSEEILTQTIQALNRGETIADP----------LGLASDCVRSCIIASN--GKK 375 Q P+ R I QT+ A R + +DP LGLA VR IA N G + Sbjct: 619 QVHPQTGRVHTIFHQTVAATGRLSS-SDPNLQNIPARGELGLA---VRRAFIADNRPGYR 674 Query: 376 -------LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 L+ D + IE R++A + + ++AFA G+DI+ T ++ F P+D V+ E Sbjct: 675 IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEM 734 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQF 462 R I KV+ + Y G + + +A G+ D Q+F Sbjct: 735 RRIAKVVNFGIMY--GMQAYG-LARDTGMSRQDAQRF 768 >gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 934 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 695 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 754 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 755 VSADERRAAKAINFGLMY 772 >gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 934 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 695 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 754 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 755 VSADERRAAKAINFGLMY 772 >gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 29/157 (18%) Query: 328 QNLPRQERSEEILTQTIQALNRGETIADP----------LGLASDCVRSCIIASN--GKK 375 Q P+ R I QT+ A R + +DP LGLA VR IA N G + Sbjct: 619 QVHPQTGRVHTIFHQTVAATGRLSS-SDPNLQNIPARGELGLA---VRRAFIADNRPGYR 674 Query: 376 -------LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 L+ D + IE R++A + + ++AFA G+DI+ T ++ F P+D V+ E Sbjct: 675 IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGKDIHAATASEVFGVPLDAVTPEM 734 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGL---DLQQF 462 R I KV+ + Y G + + +A G+ D Q+F Sbjct: 735 RRIAKVVNFGIMY--GMQAYG-LARDTGMSRQDAQRF 768 >gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] Length = 926 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 687 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVSAFESGADVHRATAAEVFGRTIDT 746 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 747 VSGDERRAAKAINFGLMY 764 >gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a] gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a] Length = 884 Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 3/93 (3%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ ++ + L+ AD + IE R++A ++G++ I+AF +GED++ A+AF P+ +V Sbjct: 645 RAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEV 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 E R K M L Y G F +AS G+ Sbjct: 705 DPELRRRIKAMSYGLAY--GLSAFG-LASQLGI 734 >gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580] gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580] Length = 951 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A++G KL+ AD A IE +LA + ++ +KAF G D++ T A FN P++ Sbjct: 712 IRKAFYAADGCKLISADYAQIELVILAHFSQDENLVKAFRQGTDVHAATAALIFNVPVEN 771 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V + R I KV+ + Y G F+ Sbjct: 772 VVPDMRRIAKVINFGVMY--GMSAFR 795 >gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B] gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B] Length = 878 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 45/83 (54%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C +A+ GKKLV AD + IE RVLA ++GE + AF G DI+ T A F+ Sbjct: 639 MRECFVAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEAD 698 Query: 424 VSKEQRAIGKVMELALGYQGGAK 446 + ++R K + L Y G + Sbjct: 699 IRPDERRQAKTINFGLLYGMGPQ 721 >gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] Length = 934 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 695 IRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 754 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 755 VSADERRAAKAINFGLMY 772 >gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255] Length = 882 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + KLV AD + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ Sbjct: 643 IRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMED 702 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R K + + Y Sbjct: 703 VTSELRGAAKAVNFGIIY 720 >gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619] gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619] Length = 915 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNNLDVHRATAAEVFGVALEA 735 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y G F +A G+D +Q Sbjct: 736 VTTDQRRSAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 770 >gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72] gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72] Length = 918 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA +V AD + IE R++A ++G+ ++AFA GED++ T A+ F + Sbjct: 679 IRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGEDVHRATAAEVFGVAPSE 738 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 739 VSSEQRRYAKVINFGLIY 756 >gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630] gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42] gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile] Length = 882 Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + KLV AD + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ Sbjct: 643 IRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMED 702 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R K + + Y Sbjct: 703 VTSELRGAAKAVNFGIIY 720 >gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301] gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301] Length = 928 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ ++ + AFAN EDI+ T A+ F + Sbjct: 689 IREAFIAPKGSHIVSADYSQIELRIMAHLSKDEGMLAAFANNEDIHRHTAAEIFGVEREN 748 Query: 424 VSKEQRAIGKVMELALGY 441 V EQR KV+ L Y Sbjct: 749 VDSEQRRYAKVINFGLIY 766 >gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63] gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] Length = 882 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + KLV AD + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ Sbjct: 643 IRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMED 702 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R K + + Y Sbjct: 703 VTSELRGAAKAVNFGIIY 720 >gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26] gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932] gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55] gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79] gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196] gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291] gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58] gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196] gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291] Length = 882 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + KLV AD + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ Sbjct: 643 IRKVFIADDNCKLVDADYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMED 702 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R K + + Y Sbjct: 703 VTSELRGAAKAVNFGIIY 720 >gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193] gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193] Length = 935 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 77/314 (24%), Positives = 137/314 (43%), Gaps = 54/314 (17%) Query: 141 DSPPYDCTRAN-HVQAWQLF-GEYCKRDVEATRELFKR-LIP-LSDGERDLWLLDQTIND 196 D+ PY A+ ++ WQ F E +R V E +R L+P L++ ER+ Sbjct: 500 DAVPYAAEDADITLRLWQHFKPELHQRQVTVVYETLERPLVPVLAEMERN---------- 549 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLV 254 G ++D D + ++ AQ+ L+++I L + S +Q + L ++L Sbjct: 550 -GIKVDRDTLSRMSNAFAQKMAALEDEIHALAGQPFNVGSPKQ-----LGEILFDKLELP 603 Query: 255 DMSEGTLKSILSHSNITQ-LAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRG 307 +G + + ++I + LA + L L + KL + L + ++ D GR+ Sbjct: 604 GGKKGKTGAYATGADILEDLATEHALPALVLDWRQLSKLKSTYTDALQDHINPDTGRVHT 663 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + GA+ TGR + QN+P RSEE +R Sbjct: 664 SYIQTGAN-TGRMASSDPNLQNIPV--RSEE----------------------GRRIREA 698 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + G L+ D + IE R+LA +AG D AFA G+DI+ T ++ F+ P+++++ + Sbjct: 699 FVPEQGNVLLSLDYSQIELRILAHVAGIDALKAAFAAGQDIHAMTASEMFDVPMEEMTAD 758 Query: 428 QRAIGKVMELALGY 441 R K + + Y Sbjct: 759 IRRQAKAINFGVIY 772 >gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099] gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099] Length = 1003 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 47/296 (15%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYAL 241 ER L + + RG +D ++ +L +AQ +L+E+I +L I S +Q L Sbjct: 600 ERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLIGERINIGSPKQ---L 656 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI-----LNRLASSGSAILKL---- 292 LF G + G+ S QL +DL L R + KL Sbjct: 657 GDILFGRMG-----LPGGSKTKTGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTY 711 Query: 293 -NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + D R T A+ TGR S QN+P R+ E Sbjct: 712 TDALPGFIHPDTRRVHTSYALAATTTGRLSSSDPNLQNIP--VRTAE------------- 756 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R+ IA G +LV AD + IE RVLA +A +AFA+G DI+ Sbjct: 757 ---------GRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAI 807 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 T ++ FN P++ + E R K + + Y G F +A+ + ++ S +K Sbjct: 808 TASEMFNVPVEGMPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEASNYIK 860 >gi|329946786|ref|ZP_08294198.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] gi|328526597|gb|EGF53610.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 170 str. F0386] Length = 913 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +A+ SDGR+ T Q A+ TGR S QN+P R+EE + + QA GE Sbjct: 628 LRKAIQSDGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARNEEGM-RIRQAFTVGE--- 680 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +C L+ AD + IE R++A ++G+ I+AF +GED++ A Sbjct: 681 -----GYEC------------LMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAA 723 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 +D V+ +QR+ K M L Y Sbjct: 724 LVHGIDVDDVTAQQRSHVKAMSYGLAY 750 >gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118] gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118] Length = 933 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 694 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 754 VSGDERRAAKAINFGLMY 771 >gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 933 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 694 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 754 VSGDERRAAKAINFGLMY 771 >gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 933 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 694 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 754 VSGDERRAAKAINFGLMY 771 >gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium glutamicum ATCC 13032] Length = 905 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L V+ DGR+ T AS TGR S QN+P R+E Sbjct: 617 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 659 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 660 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 711 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K FN PID V+ E R K M L Y Sbjct: 712 YVGSKVFNVPIDGVTPELRRQVKAMSYGLVY 742 >gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] Length = 928 Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G ++V AD + IE R++A ++ ++ +KAFA+GEDI+ T A+ F + Sbjct: 689 VREAFIAPAGWQIVSADYSQIELRIMAHLSDDEGMLKAFASGEDIHRATAAEVFGVELAA 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 749 VTSDQRRAAKAINFGLIY 766 >gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] Length = 933 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 694 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 753 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 754 VSGDERRAAKAINFGLMY 771 >gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016] gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016] Length = 957 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ I++ Sbjct: 717 IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQ 776 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + F + ED Sbjct: 777 VSSEQRRRAKAVNFGLIY--GMSAFG-LAKQLGIPRGEAQTYMDKYFERYPGVMQYMEDT 833 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 S H +++ + PE A+ + GTA +++KKA Sbjct: 834 RSNASQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKA 887 >gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032] Length = 880 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L V+ DGR+ T AS TGR S QN+P R+E Sbjct: 592 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 634 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 635 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 686 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K FN PID V+ E R K M L Y Sbjct: 687 YVGSKVFNVPIDGVTPELRRQVKAMSYGLVY 717 >gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I] Length = 904 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA GK L+ AD + IE R++A ++ + +AFA GEDI+ T ++ F P+ + Sbjct: 666 VREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAE 724 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V EQR K + L Y G VF +AS+ G+ Sbjct: 725 VGAEQRRAAKAINFGLIY--GMGVFG-LASNLGI 755 >gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380] gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380] Length = 932 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 692 IRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEG 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTTEQRRSAKAINFGLIY 769 >gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R] gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R] Length = 880 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L V+ DGR+ T AS TGR S QN+P R+E Sbjct: 592 LEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 634 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 635 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 686 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K FN PID V+ E R K M L Y Sbjct: 687 YVGSKVFNVPIDGVTPELRRQVKAMSYGLVY 717 >gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513] gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513] Length = 872 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 47/77 (61%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I + +V AD + IE RVLA ++G++ I++F N EDI++ T ++ F P++KV Sbjct: 634 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKV 693 Query: 425 SKEQRAIGKVMELALGY 441 + E R + K + + Y Sbjct: 694 TPEMRRVAKAVNFGIIY 710 >gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822] gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis] Length = 904 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA GK L+ AD + IE R++A ++ + +AFA GEDI+ T ++ F P+ + Sbjct: 666 VREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAE 724 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V EQR K + L Y G VF +AS+ G+ Sbjct: 725 VGAEQRRAAKAINFGLIY--GMGVFG-LASNLGI 755 >gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] Length = 931 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 65/150 (43%), Gaps = 25/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+TL DGR+ T + TGR S QN+P RSE Sbjct: 647 LDTLGPLRRHDGRVHTTYN-QTITATGRLSSSSPNLQNIP--TRSE-------------- 689 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 LG A V+ G V D + IE R+LA ++G++ + AF GED + Sbjct: 690 -----LGHA---VKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAE 741 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ F P+D+V+ + R+ K + + Y Sbjct: 742 TAARVFGVPVDEVTPQLRSRAKAVNFGIVY 771 >gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] Length = 930 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 112/261 (42%), Gaps = 45/261 (17%) Query: 201 IDLDLVLKL----QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT-----GI 251 I++ L+ L QE + ER +L E +L GI + ++ Y + F I G Sbjct: 533 IEMPLIYSLFHMEQEGVKVERAELKEYGDRLKVGIAKLEQEIYQETGHEFNINSPKQLGE 592 Query: 252 DLVDMSE--GTLKSILSHSN----ITQLAKDLILNRLASSGSAILKLNT-----LSEAVS 300 L + E G K+ +S + +LA D + + + KLN+ L+ + Sbjct: 593 ILFEQMELPGGKKTKTGYSTAADVLEKLAPDYPVVQKILDYRQLTKLNSTYAEGLAAYIG 652 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ G + TGR S QN+P + AL R Sbjct: 653 EDGRIHGKFN-QTITATGRISSTEPNLQNIPVR-----------MALGRE---------- 690 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G V AD + IE R+LA ++G++ I+A+ + +DI+ T ++ F+ P Sbjct: 691 ---IRKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAYRSAQDIHAITASQVFHVP 747 Query: 421 IDKVSKEQRAIGKVMELALGY 441 +D+V+ QR K + + Y Sbjct: 748 LDEVTPLQRRNAKAVNFGIVY 768 >gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50] gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50] Length = 904 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/94 (38%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA GK L+ AD + IE R++A ++ + +AFA GEDI+ T ++ F P+ + Sbjct: 666 VREAFIAEQGK-LLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAE 724 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V EQR K + L Y G VF +AS+ G+ Sbjct: 725 VGAEQRRAAKAINFGLIY--GMGVFG-LASNLGI 755 >gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654] gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654] Length = 932 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GK LV D + IE R+LA +AG + +AF +GEDI+ T ++ F+ P+D+ Sbjct: 692 IREAFVAPEGKVLVSLDYSQIELRILAHVAGIESMKQAFRDGEDIHAATASEMFDVPLDE 751 Query: 424 VSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 752 MTPDVRRQAKAINFGVIY 769 >gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] Length = 911 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA++G K+V AD + IE R++A ++ + + AFANG D++ T A+ F +D Sbjct: 671 IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVFGVELDD 730 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R K + L Y Sbjct: 731 VTTDMRRKAKAVNFGLIY 748 >gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62] gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62] Length = 930 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF +GED++ T A+ F T + Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPEN 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR K + L Y G +A G+D Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 781 >gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] Length = 896 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 29/153 (18%) Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 L+TL V+ GR+ + G TGR S QNLP + E +EI Sbjct: 610 LDTLPTLVNPVTGRIHASYHQTGTG-TGRLSSSNPNMQNLPIKGEEGKEI---------- 658 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 R C++ K++ AD + IE RVLA + ++ I AF NGED+ Sbjct: 659 ---------------RKCVVPQKSDWKIISADYSQIELRVLAHFSEDERLISAFKNGEDV 703 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + T ++ + + V+ E R +GK++ ++ Y Sbjct: 704 HALTASRLYGVSVKDVTPEMRQVGKMVNFSIIY 736 >gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] Length = 911 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA++G K+V AD + IE R++A ++ + + AFANG D++ T A+ F +D Sbjct: 671 IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANGLDVHSATAAEVFGVDLDD 730 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R K + L Y Sbjct: 731 VTTDMRRKAKAVNFGLIY 748 >gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18] gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18] Length = 1003 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 20/148 (13%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L +A + DGR+ T Q GA+ TGR S QN+P R E I RG I Sbjct: 712 LQKAATEDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRTEEGRRI---------RGAFI 761 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 P I + L+ AD + IE R++ +A ++ I A+ GED++ Sbjct: 762 VAP---------EPIDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHRYVG 812 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F + V+ EQR+ K M L Y Sbjct: 813 SEVFGVAPEDVTPEQRSKVKAMSYGLAY 840 >gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] Length = 871 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ + DGR+ G + TGR S QN+P R E L R Sbjct: 588 LANYIQDDGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 630 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R I G + V AD + IE RVLA +G++ I+A+ DI+ T Sbjct: 631 ---------LIRKVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITA 681 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P D+V+ +QR K + + Y Sbjct: 682 SQVFHIPFDEVTPQQRRNAKAVNFGIVY 709 >gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090] gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2] gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090] gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] Length = 930 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF +GED++ T A+ F T + Sbjct: 690 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPEN 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR K + L Y G +A G+D Sbjct: 750 VSPEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 781 >gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] Length = 912 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 39/181 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L H + T+L + ++ L + V+ DGR+ T A+ TGR Sbjct: 608 LEHLLEHRDATRLK---------------VTVDGLLKTVAEDGRIHTTFNQTVAA-TGRL 651 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + + G I D ++ + L+ AD Sbjct: 652 SSTEPNLQNIPVRT-------------DAGRQIRD----------GFVVGEGYETLLTAD 688 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I+AF GED++ ++AF PI++V+ E R K M L Sbjct: 689 YSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLA 748 Query: 441 Y 441 Y Sbjct: 749 Y 749 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 24/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ T + TGR S QN+P I P G S Sbjct: 655 GRIHTTF-MQAVTATGRLSSNQPNLQNIP---------------------IRTPRG--SQ 690 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 ++ + L+ AD + IE R++A ++ E I+AF +G+DI+ +T AK F P++ Sbjct: 691 IRKAFVPRDENYTLLSADYSQIELRIIAALSEETHMIEAFLDGQDIHRSTAAKVFGVPLE 750 Query: 423 KVSKEQRAIGKVMELALGY 441 V+KEQR+ K + + Y Sbjct: 751 AVTKEQRSHAKTVNFGIIY 769 >gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314] Length = 945 Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L +V SDGR+ T AS TGR S QN+P R+E Sbjct: 657 LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 699 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 700 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 751 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ PID V+ E R K M L Y Sbjct: 752 YVGSKVFDVPIDGVTPELRRRVKAMSYGLVY 782 >gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium pseudotuberculosis I19] Length = 886 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L +AV SDGR+ T AS TGR S QN+P + TQ Sbjct: 598 LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP-------VRTQD-------- 641 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 642 ---------GRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHN 692 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F P+D+V+ E R K M L Y Sbjct: 693 YVGSRVFEVPVDQVTPELRRRVKAMSYGLVY 723 >gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] Length = 997 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G +LV AD + IE RVLA +A +AFA+G DI+ T ++ FN P++ Sbjct: 754 IRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 813 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ + ++ S +K Sbjct: 814 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEASNYIK 854 >gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] Length = 895 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 79/182 (43%), Gaps = 41/182 (22%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L ++L H ++T+L + + L + V DGR+ T A+ TGR Sbjct: 591 LLALLRHRDVTRLR---------------VTIEGLLKTVQDDGRIHTTFNQTIAA-TGRL 634 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P R+EE RG +R + G + L+ A Sbjct: 635 SSTEPNLQNIPV--RTEE---------GRG-------------IRKGFVVGGGFESLMTA 670 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF +G D + T A+ F D VS EQRA K M L Sbjct: 671 DYSQIEMRIMAHLSEDELLIEAFRSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNYGL 730 Query: 440 GY 441 Y Sbjct: 731 AY 732 >gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231] gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002] Length = 886 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L +AV SDGR+ T AS TGR S QN+P + TQ Sbjct: 598 LEGLIKAVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIP-------VRTQD-------- 641 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 642 ---------GRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHN 692 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F P+D+V+ E R K M L Y Sbjct: 693 YVGSRVFEVPVDQVTPELRRRVKAMSYGLVY 723 >gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC] gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC] Length = 868 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 32/163 (19%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+QR K + Sbjct: 643 FLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAV 702 Query: 436 ELALGY----QGGAKVFKTMASHC-GL-----------------DLQQFSQNVKSTST-- 471 L Y G +K+ K S GL ++Q S+N K T+ Sbjct: 703 NFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTMLG 762 Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 DWE + + AV ++ G+A EL+K A Sbjct: 763 RERILSDWESSPG----ARAASGRLAVNTRIQGSAAELIKLAM 801 >gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314] Length = 904 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 48/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L +V SDGR+ T AS TGR S QN+P R+E Sbjct: 616 LEGLIRSVGSDGRIHTTFNQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 658 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 659 --------AGRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHN 710 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ PID V+ E R K M L Y Sbjct: 711 YVGSKVFDVPIDGVTPELRRRVKAMSYGLVY 741 >gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] Length = 878 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L+ + DG++ + TGR S QN+P Sbjct: 593 DGLAAFIQEDGKIHSIFH-QKVTATGRLSSSDPNLQNIP--------------------- 630 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I PLG A +R + +G V AD + IE RVLA +AG++ I A+ +GEDI+ T Sbjct: 631 IRMPLGRA---IRKVFVPDSGYVFVSADYSQIELRVLAHMAGDEHLIDAYRHGEDIHRMT 687 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F P ++V+ R K + + Y Sbjct: 688 ASQVFGVPFEEVTPLLRRSAKAVNFGIVY 716 >gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G KL+ AD + IE R++A +A + + AF N D++ T A+ F P+++ Sbjct: 675 IRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQ 734 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 735 VSNDQRRSAKAINFGLIY 752 >gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J] gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J] gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] Length = 937 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 54/94 (57%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ ++ ++AF G+D++ T A+ FN + Sbjct: 698 IREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAFREGQDVHRATAAEVFNVTPLE 757 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR + KV+ L Y G F +AS+ G+ Sbjct: 758 VTPDQRRVAKVINFGLIY--GMSAFG-LASNLGI 788 >gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] Length = 941 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G + AD + IE R++A I+G++ + AF G D++ T A+ F +++ Sbjct: 702 VREAFVAPAGSVIASADYSQIELRIMAHISGDESLLHAFTAGLDVHRATAAEVFGVALEQ 761 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 762 VSSEQRRYAKVINFGLIY 779 >gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276] gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s] gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768] gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222] gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074] gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301] Length = 866 Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 32/163 (19%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+QR K + Sbjct: 641 FLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAV 700 Query: 436 ELALGY----QGGAKVFKTMASHC-GL-----------------DLQQFSQNVKSTST-- 471 L Y G +K+ K S GL ++Q S+N K T+ Sbjct: 701 NFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTMLG 760 Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 DWE + + AV ++ G+A EL+K A Sbjct: 761 RERILSDWESSPG----ARAASGRLAVNTRIQGSAAELIKLAM 799 >gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45] gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45] Length = 935 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E ++ + GR+ + GA+ TGR + QN+P RSEE Sbjct: 648 DALQEHINKETGRVHTSYVIAGAN-TGRLASTDPNLQNIPV--RSEE------------- 691 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK +V D + IE R+LA +AG D +AF G+DI+ Sbjct: 692 ---------GRRIREAFVAPEGKTIVSLDYSQIELRILAHMAGIDALKEAFREGQDIHAM 742 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P+++++ E R K + + Y Sbjct: 743 TASEMFNVPMEEMTPEIRRQAKAINFGVIY 772 >gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100] gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris] Length = 927 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 688 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 747 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 748 VSGDERRAAKAINFGLMY 765 >gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1] gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1] Length = 915 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALED 735 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y G F +A G+D +Q Sbjct: 736 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 770 >gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 872 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 64/306 (20%), Positives = 124/306 (40%), Gaps = 73/306 (23%) Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 I+ P + ++ V + L D E +EL +++ +R +LD+ + GY Sbjct: 474 IEMPLVEVLKSMEVSGFTL-------DKEVLKELSQKI-----NDRIAEILDKIYKEAGY 521 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 + +++ +L E + + KL +I+ ++ Y+ Sbjct: 522 QFNVNSPKQLSEFLFE----------KLNLPVIKKTKTGYS---------------TDSE 556 Query: 260 TLKSILSHSNITQLAKDLI----LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 L+ ++ ++NI D+I L +L S+ +N + + R+ + + Sbjct: 557 VLEQLVPYNNIVN---DIIEYRQLTKLKSTY-----INGFLPLMDENNRVHSNFK-QMVT 607 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +E R+ I + Sbjct: 608 STGRISSTEPNLQNIPIREE-----------------------FGRQIRRAFIPRTKDGY 644 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 +V AD + IE RVLA ++G++ I++F N EDI++ T ++ F P++KV+ E R K + Sbjct: 645 IVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKAV 704 Query: 436 ELALGY 441 + Y Sbjct: 705 NFGIIY 710 >gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S] gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S] Length = 912 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 39/181 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L H + T+L + ++ L + V+ DGR+ T A+ TGR Sbjct: 608 LEHLLEHRDATRLK---------------VTVDGLLKTVAEDGRIHTTFNQTVAA-TGRL 651 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + + G I D ++ + L+ AD Sbjct: 652 SSTEPNLQNIPVRT-------------DAGRQIRD----------GFVVGEGYETLLTAD 688 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I+AF GED++ ++AF PI++V+ E R K M L Sbjct: 689 YSQIEMRIMAHLSGDAGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLA 748 Query: 441 Y 441 Y Sbjct: 749 Y 749 >gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501] gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501] Length = 931 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G KL+ AD + IE R++A +A + + AF N D++ T A+ F P+++ Sbjct: 692 IRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGLLHAFQNDLDVHRATAAEVFGVPLEQ 751 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 752 VSNDQRRSAKAINFGLIY 769 >gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] Length = 927 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++G+ + AF +G D++ T A+ F ID Sbjct: 688 IRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDT 747 Query: 424 VSKEQRAIGKVMELALGY 441 VS ++R K + L Y Sbjct: 748 VSGDERRAAKAINFGLMY 765 >gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114] gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114] Length = 933 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + ++ D GR+ + GAS TGR + QN+P RSEE Sbjct: 646 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPI--RSEE------------- 689 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK LV D + IE R+LA IA AF +G+DI+ Sbjct: 690 ---------GRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKTAFDDGQDIHAM 740 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+ P+D+++ E R K + + Y Sbjct: 741 TASEMFDVPLDEMTPEIRRQAKAINFGVIY 770 >gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440] gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440] Length = 915 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALED 735 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y G F +A G+D +Q Sbjct: 736 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 770 >gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++G+ ++AFA+G DI+ T A+ F+T Sbjct: 675 IREAFVAPAGSVIVSADYSQIELRIMAHLSGDANMLRAFADGIDIHRATAAEIFSTGAAD 734 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR KV+ L Y G F +A + G++ Sbjct: 735 VTTEQRRYAKVINFGLIY--GMSAFG-LAGNLGIE 766 >gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02] gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18] gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140] gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19] gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11] gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18] gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1] gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1] gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332] gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679] gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035] gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae TCDC-NG08107] Length = 908 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ I AF +GED++ T A+ F T + Sbjct: 668 VRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQSGEDVHRRTAAEVFGTAPEN 727 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS EQR K + L Y G +A G+D Sbjct: 728 VSPEQRRYAKTINFGLIYGMGQ---YGLAKSLGID 759 >gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149] gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149] Length = 933 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 92/395 (23%), Positives = 166/395 (42%), Gaps = 53/395 (13%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L DE+++ + N ++ +F + +GI + A GL +A L+ + Sbjct: 415 LEDESILKIGQNMKYDAKIFAQ-VGITVAPIDDTMLMSYAMHGGLHGHGMDA-LSERYLG 472 Query: 121 HLTK-----MEEGKALIARFCKGSI-DSPPYDCTRAN-HVQAWQLFGEYCKRDVEATREL 173 H + GK+ I F K + D+ PY A+ ++ WQ F R + TR + Sbjct: 473 HTPLPIKPLLGSGKSAIT-FDKVPLNDAVPYAAEDADVTLRLWQQFKPALHR-AQVTR-V 529 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ L ER + + + G ++D D + ++ +Q+ L+++I L + R Sbjct: 530 YETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQKMAALEDEIYTL---VGR 580 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ-LAKDLILNRLASSGSAILKL 292 ++ L + L +G + + +++ + LA + L R + KL Sbjct: 581 KFNVGSPKQLGEILFDEMGLQGGKKGKTGAYATGADVLEDLATEHELPRRILDWRQLSKL 640 Query: 293 -----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + ++ D GR+ + GAS TGR + QN+P RSEE Sbjct: 641 KSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPI--RSEE-------- 689 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A GK LV D + IE R+LA IA AF +G+ Sbjct: 690 --------------GRRIREAFVAEEGKTLVALDYSQIELRILAHIADIPALKAAFDDGQ 735 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ T ++ F+ P+D+++ E R K + + Y Sbjct: 736 DIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIY 770 >gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1] Length = 915 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALED 735 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y G F +A G+D +Q Sbjct: 736 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 770 >gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291] Length = 913 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 59/222 (26%), Positives = 95/222 (42%), Gaps = 56/222 (25%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H + T+L + ++ L +V+SDGR+ T A+ TGR Sbjct: 609 LQHLLAHRDATRLK---------------VTVDGLLNSVASDGRIHTTFNQTIAA-TGRL 652 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 S QN+P I T+ A R + +G +L+ A Sbjct: 653 SSTEPNLQNIP-------IRTE-----------------AGRRTRDAFVVGDGYAELMTA 688 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + I+AF GED++ ++AF PI++V+ E R K M L Sbjct: 689 DYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFGVPIEEVTGELRRRVKAMSYGL 748 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 Y GL SQ +K ST E EQ +++ Sbjct: 749 AY--------------GLSAYGLSQQLK-ISTEEAKEQMDAY 775 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S+ + L++ AD + +E R++A ++G++ I AFA+GEDI+ T AK FN +D Sbjct: 718 IRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLIAAFAHGEDIHAATAAKLFNKTLD 777 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E+R K + Y Sbjct: 778 EVTSEERRRAKTANFGIIY 796 >gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7] gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7] Length = 880 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + DG++ + + TGR S QN+P + E EI Sbjct: 596 LKAVIDKDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREI-------------- 640 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R + + +++ AD + IE RVLA IA ++ I AF N DI+ T Sbjct: 641 -----------RKVFVPEDENSIILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKT 689 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PID+V+K QR+ K + + Y G Sbjct: 690 ASEVFKVPIDQVTKLQRSNAKAVNFGIVYGIG 721 >gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] Length = 911 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 79/176 (44%), Gaps = 29/176 (16%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G++++ AD + IE R++A ++ + ++AF+ G D++ T A+ F ++ Sbjct: 672 IRQAFVAPEGRRILAADYSQIELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELND 731 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLD-----LQQFSQNVKSTSTFEDWEQ 477 V+ +QR K + L Y G F H G ++++ + + + Sbjct: 732 VTVDQRRKAKAINFGLIY--GMSAFGLARQLHIGRGEAQEYIERYFSRYPGVADYMARTR 789 Query: 478 AESH-------HLWMQDQYPEFAVKDK--------------LIGTACELVKKAWRA 512 AE+H H + Q PE K+K + GTA +++KKA A Sbjct: 790 AEAHERGYVETHFGRRLQLPEINAKNKQRQLAAERTAINAPMQGTAADIIKKAMIA 845 >gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] Length = 950 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 29/172 (16%) Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 Q L+L+R + I++ TL +A + SDGR+ T + A+ TGR S QN+ Sbjct: 643 QFLDALLLHREKNKLKQIVQ--TLIDATNGSDGRIHTTFEQTVAA-TGRLSSVDPNLQNI 699 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389 P NR DP G +RS + G + L+ +D + +E R++ Sbjct: 700 P----------------NR-----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIM 735 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Y Sbjct: 736 ADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITSDQRSHVKAMSYGLAY 787 >gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3] gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3] Length = 945 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ ++ + + L+ AD + IE R++A ++G++ I+AF +GED++ A+AF P+ +V Sbjct: 706 RAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVAAEAFGLPVSEV 765 Query: 425 SKEQRAIGKVMELALGY 441 E R K M L Y Sbjct: 766 DPELRRRIKAMSYGLAY 782 >gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus parainfluenzae T3T1] Length = 932 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ + I AF G+DI+ +T A+ F +D+ Sbjct: 694 IRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIFGVALDE 753 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 754 VTSEQRRNAKAINFGLIY 771 >gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] Length = 1009 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 72/298 (24%), Positives = 119/298 (39%), Gaps = 46/298 (15%) Query: 156 WQLF-GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 W LF + A +R +P G+ + G +D ++ +L A Sbjct: 580 WHLFRARIAAEGMAAVYATLERPMPAVLGQMEF---------NGIEVDRTVLSRLSGDFA 630 Query: 215 QERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSH 267 Q +L+++I +L I S +Q L F + G + L+ ++S Sbjct: 631 QSLARLEDEIYELAGQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAKVLEDLVSS 690 Query: 268 SNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 ++T+ + L L A LK ++L + + +D GR+ T ++ TGR S Sbjct: 691 EDLTEDQRRLPAKLLEWRQLAKLKSTYTDSLPQHIDADTGRIH-TCYSLASTSTGRLSST 749 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + R + +RS IA+ GKKL+ AD + Sbjct: 750 EPNLQNIPIRTREGRM------------------------IRSAFIAAPGKKLISADYSQ 785 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE RVLA +A AFA G DI+ T ++ F P+ + E R K + + Y Sbjct: 786 IELRVLAHMADIPALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIY 843 >gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] Length = 866 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R C+I S G AD + IE RVLA ++G+ I+ F + DI+ T A F P D Sbjct: 630 IRECLIPSQPGHCFAAADYSQIELRVLAHLSGDPQLIEIFNSDRDIHTETAAMIFGLPAD 689 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+KE R K + L Y G VF +AS G D Sbjct: 690 AVTKELRRSAKTVSFGLIY--GMSVFG-LASRLGTD 722 >gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365] gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365] Length = 930 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 47/78 (60%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ GK LV D + IE RV+A ++G++ ++AF N D++ T A+ F+ P ++ Sbjct: 691 IRRAFVAAPGKTLVSIDYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREE 750 Query: 424 VSKEQRAIGKVMELALGY 441 + ++R + K + L Y Sbjct: 751 IGPDERRVAKAVNYGLMY 768 >gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 561 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I + +V AD + IE RVLA ++G++ I++F N EDI++ T A+ F P++KV Sbjct: 323 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKV 382 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 383 TPEMRRAAKAVNFGIIY 399 >gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] Length = 916 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 30/177 (16%) Query: 270 ITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 ++ LA+D LIL+ S L+TL DGR+ T + TGR S Sbjct: 603 LSDLARDHEIVRLILDWREKSKIKSTYLDTLGPLRRGDGRVHTTYN-QTITATGRLSSSD 661 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P RSE L R V++ A G + D + I Sbjct: 662 PNLQNIP--TRSE---------LGR-------------TVKTAFSAGEGSVFLAVDYSQI 697 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 E R+LA ++G++ ++AF GED + T A+ F P+ +V+ + R+ K + + Y Sbjct: 698 ELRLLAHLSGDEHLVRAFNEGEDFHAETAARVFGVPVSEVTPDLRSRAKAVNFGIVY 754 >gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18] gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18] Length = 892 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 81/304 (26%), Positives = 131/304 (43%), Gaps = 46/304 (15%) Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 G Y D +AT L + L+P L D E L + + G ++D++L+ +L Sbjct: 459 GPYSCEDADATYLLHEILLPKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKEL 518 Query: 210 QELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ +L+ I + G I S +Q L LF G+ + ++G + Sbjct: 519 STGFGRQLIELEAKIHEHCGGSFNINSPKQ---LGEMLFERMGLAVGKKTKGKTGWSTNV 575 Query: 268 SNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWS 321 + +LA++ + RL +I KL +T ++A+ GR+ + + TGR S Sbjct: 576 EELERLAEEHEVARLLLQYRSISKLKSTYTDALPRLVDPKTGRVHTSYN-QAITNTGRLS 634 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P R EE RG +R IA G ++ AD Sbjct: 635 SSDPNLQNIPV--RGEE---------GRG-------------IRRAFIAEPGSLILSADY 670 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++G+ +AFA GEDI+ T A+ F + V+ E R KV+ + Y Sbjct: 671 SQIELRVLAHLSGDRVLCEAFAAGEDIHRRTAAEVFGMFPELVTAEMRRQAKVINFGVIY 730 Query: 442 QGGA 445 GA Sbjct: 731 GQGA 734 >gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183] gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183] Length = 870 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 100/407 (24%), Positives = 166/407 (40%), Gaps = 76/407 (18%) Query: 154 QAWQLFGEYCK-----RDV---EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 Q Q FGE+ +D E R+ + LSD E L + ++ G +D++ Sbjct: 441 QPEQYFGEFVAYLPIIKDAILEEINRKNLNHI--LSDIEMPLEKVLFSMERAGVPLDVEE 498 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263 + L+ L E L E+I L+ G I+S +Q L L+ G+ +D ++ T Sbjct: 499 LAILEALFETELAVLTEEIYDLSGGPFNIKSPKQ---LSDILYNELGLRPIDKAKSTRAE 555 Query: 264 ILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRT 317 +L H I +L + +L S+ + L + V S R+ + GA T Sbjct: 556 VLEALRSEHPIIEKLLAFRTIEKLLST-----YVKALPKQVDSHTQRIHPSFDQTGAV-T 609 Query: 318 GRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 GR + QN+P R ER IL + ++ ++ Sbjct: 610 GRLACRDPNLQNIPIRSERG--ILLR----------------------KAFRLSEKNSYF 645 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R LA ++ + AF +GEDI+ T ++ F+ P+++VSKEQR K + Sbjct: 646 LSADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVN 705 Query: 437 LALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQ----- 486 + Y G AKV K +Q + + F E+ Q + L + Sbjct: 706 FGIVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGR 765 Query: 487 -------DQYP-------EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +++P FAV ++ G+A EL+K A Q + Q Sbjct: 766 ERIIDSWNEFPGSRAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQ 812 >gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] Length = 872 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I + +V AD + IE RVLA ++G++ I++F N EDI++ T A+ F P++KV Sbjct: 634 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKV 693 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 694 TPEMRRAAKAVNFGIIY 710 >gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG] gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG] Length = 897 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA NG +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAENGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +KAF DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1] Length = 1015 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 109/260 (41%), Gaps = 36/260 (13%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGI 251 + + G +D + + E ++ +++ K G IRS++Q L LF G+ Sbjct: 624 MEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQFNIRSAQQ---LGELLFGTLGL 680 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 V + G ++ S + +L+ DLIL+ L L + V + GR+ Sbjct: 681 PTVGKTRGG-QATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDAAGRIH 739 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T A+ TGR S QN+P RG+ LG +RS Sbjct: 740 STFNQL-ATATGRLSSSNPNLQNIP----------------ARGD-----LGRR---MRS 774 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 C A+ G LV AD + IE RVLA ++ + + AF G DI+ T ++T + V+ Sbjct: 775 CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTP 834 Query: 427 EQRAIGKVMELALGYQGGAK 446 +QR K + L Y G + Sbjct: 835 DQRRNAKTINFGLIYGMGPQ 854 >gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1] Length = 833 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I + +V AD + IE RVLA ++G++ I++F N EDI++ T A+ F P++KV Sbjct: 595 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKV 654 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 655 TPEMRRAAKAVNFGIIY 671 >gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] Length = 932 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ + I AF G+DI+ +T A+ F +D+ Sbjct: 694 IRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQGKDIHRSTAAEIFGVALDE 753 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 754 VTSEQRRNAKAINFGLIY 771 >gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] Length = 876 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 73/167 (43%), Gaps = 25/167 (14%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA ++G+ I AF +G+DI+ T A+ F PID V+ EQR K + Sbjct: 649 LLSADYSQIELRILAHMSGDATLIDAFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAV 708 Query: 436 ELALGY----QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------- 481 + Y G ++ + ++++ + F D A++H Sbjct: 709 NFGIVYGLSDYGLSRDLRIPRKEAAGYIERYFERYHGVREFLDKTVADAHANGYVTTLYG 768 Query: 482 ----------HLWMQDQYPE-FAVKDKLIGTACELVKKAWRAKHQGV 517 +MQ + E A+ + GTA +L+K A H + Sbjct: 769 RRRELSAINSRNYMQRSFAERMAMNTPIQGTAADLIKIAMIRAHDAL 815 >gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] Length = 894 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + +L ++V+ DGR+ T + TGR S QN+P RSEE Sbjct: 606 IESLKKSVAEDGRIHTTYA-QNVAATGRISSNNPNLQNIPI--RSEE------------- 649 Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR + S+G + L+ AD + IE R++A ++G+ I+A+ +GED++ Sbjct: 650 ---------GRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLIQAYKDGEDLHR 700 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ P D+V+ R+ K M L Y Sbjct: 701 FVGSNIFHVPTDQVTSAMRSKVKAMSYGLAY 731 >gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 932 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 29/172 (16%) Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 Q L+L+R + I++ TL +A + SDGR+ T + A+ TGR S QN+ Sbjct: 625 QFLDALLLHREKNKLKQIVQ--TLIDATNRSDGRIHTTFEQTVAA-TGRLSSVDPNLQNI 681 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389 P NR DP G +RS + G + L+ +D + +E R++ Sbjct: 682 P----------------NR-----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIM 717 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Y Sbjct: 718 ADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAY 769 >gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp. novicida GA99-3549] gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549] gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] Length = 897 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA NG +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAENGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +KAF DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112] gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112] gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] Length = 897 Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA NG +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAENGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +KAF DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 835 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + + DGR+ T + TGR S QN+P R+E Sbjct: 549 LEGLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPV--RTE-------------- 591 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 592 --------AGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHN 643 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ P+D+V+ E R K M L Y Sbjct: 644 YVGSKVFDVPVDEVTPELRRRVKAMSYGLVY 674 >gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703] Length = 612 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++K Sbjct: 372 IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEK 431 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 432 VTNEQRRSAKAINFGLIY 449 >gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 880 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + + DGR+ T + TGR S QN+P R+E Sbjct: 594 LEGLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPV--RTE-------------- 636 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 637 --------AGRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHN 688 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ P+D+V+ E R K M L Y Sbjct: 689 YVGSKVFDVPVDEVTPELRRRVKAMSYGLVY 719 >gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12] gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12] Length = 917 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GKK++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F+ + Sbjct: 677 IRHAFIAREGKKVLAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFDVDFGE 736 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 737 VTTEQRRRAKAVNFGLIY 754 >gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673] gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673] Length = 890 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351 + L+ + DGR+ GT + TGR S QN+P R E EI Sbjct: 605 DGLAAFIREDGRIHGTFN-QTITATGRISSTEPNLQNIPVRMELGREI------------ 651 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 R + G L+ AD + IE RVLA ++G++ I A+ EDI+ Sbjct: 652 -------------RKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAI 698 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+ P+++V+ QR K + + Y Sbjct: 699 TASEVFHVPLEEVTPLQRRNAKAVNFGIVY 728 >gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] Length = 882 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V DGR+ T + TGR S QN+P R+E Sbjct: 596 LEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPV--RTE-------------- 638 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS I G ++L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 639 --------AGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDLHN 690 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K M L Y Sbjct: 691 FVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 721 >gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] Length = 838 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 46/81 (56%) Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 ++ +R I NG + AD + IE R+LA ++ + IKAF +G+DI+ T ++ F+ P Sbjct: 599 AEFLREVFIPENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHTATASEIFSIP 658 Query: 421 IDKVSKEQRAIGKVMELALGY 441 + V+ E R I K + + Y Sbjct: 659 ENAVTDEHRRIAKTVNFGISY 679 >gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] Length = 912 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 31/177 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + +E R++A ++G++ +AFA G DI+ T A+ F ++ Sbjct: 673 IRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEGLRQAFAEGADIHSATAAEVFGLAPER 732 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTSTFEDWE 476 V EQR K + L Y G + +A G++ + ++ + + D Sbjct: 733 VGGEQRRAAKAINFGLIY--GMSAY-GLARQLGIERGEAQAYVDRYFERYPGVKEYMDRT 789 Query: 477 QAESHH-----------LWMQD---------QYPE-FAVKDKLIGTACELVKKAWRA 512 +AE+ L++ + +Y E A+ + GTA +L+K+A A Sbjct: 790 RAEARERGYVETLFGRRLYLPEINARNRQRREYAERTAINAPMQGTAADLIKRAMVA 846 >gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180] gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180] Length = 911 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 53/95 (55%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA++G +L+ AD + IE R++A ++G++ + AFA G+DI+ T A+ + Sbjct: 672 IRRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQDIHRATAAEILGLAPED 731 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR K + L Y G F +A G++ Sbjct: 732 VTGEQRRSAKAINFGLIY--GMSAFG-LARQLGIE 763 >gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] Length = 882 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V DGR+ T + TGR S QN+P R+E Sbjct: 596 LEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPV--RTE-------------- 638 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS I G ++L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 639 --------AGRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSADPGLIEAYKAGEDLHN 690 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K M L Y Sbjct: 691 FVGSRVFDVPVDQVTPELRRRVKAMSYGLVY 721 >gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO] gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO] Length = 892 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 29/153 (18%) Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 L+ L + V + GR+ + G + TGR S QNLP +QE S EI Sbjct: 607 LDVLPKLVHPETGRIHSSFHQTGTA-TGRLSSSDPNLQNLPSKQEESREI---------- 655 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 R ++ K++ AD + IE RVLA ++ + I+AF EDI Sbjct: 656 ---------------RKAVVPQRDSWKILSADYSQIELRVLAHLSNDQNLIEAFKKDEDI 700 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + T ++ F P ++V+ + R+IGK++ ++ Y Sbjct: 701 HNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIY 733 >gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3] gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3] Length = 930 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +AS G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ Sbjct: 690 IRQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + F + ED Sbjct: 750 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 806 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 A S +++ + PE A+ + GTA +++KKA Sbjct: 807 RSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 860 >gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 677 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ ID+ Sbjct: 437 IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQ 496 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS EQR K + L Y G F +A G+ Sbjct: 497 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGI 527 >gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f] gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f] Length = 891 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ ++ + L+ AD + IE R++A ++G+ I+AFA+GED++ A+AF+ P+ +V Sbjct: 652 RAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFVAAQAFDLPVSEV 711 Query: 425 SKEQRAIGKVMELALGY 441 E R K M L Y Sbjct: 712 DPELRRRIKAMSYGLAY 728 >gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 932 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++K Sbjct: 692 IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTNEQRRSAKAINFGLIY 769 >gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70] gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s] gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923] gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2] gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150] gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023] Length = 866 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 32/163 (19%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+QR K + Sbjct: 641 FLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQRYQAKAV 700 Query: 436 ELALGY----QGGAKVFKTMASHC-GL-----------------DLQQFSQNVKSTST-- 471 L Y G +K+ K S GL ++Q S+N K T+ Sbjct: 701 NFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTMLG 760 Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 DWE + + AV ++ G+A EL+K A Sbjct: 761 RERILSDWESSPG----ARAASGRLAVNTRIQGSAAELIKLAM 799 >gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24] gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24] Length = 955 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L +L ++V+ DGR+ T + TGR S QN+P RSEE Sbjct: 667 LESLKKSVAEDGRIHTTYA-QNVAATGRISSNNPNLQNIPI--RSEE------------- 710 Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR + S G + L+ AD + IE R++A ++G+ I+A+ +GED++ Sbjct: 711 ---------GRRVRGIFVVSEGYECLLSADYSQIEMRIMAHLSGDAGLIQAYRDGEDLHR 761 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ P D+V+ R+ K M L Y Sbjct: 762 FVGSNIFHVPTDQVTSAMRSKVKAMSYGLAY 792 >gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 928 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V++EQR K + L Y Sbjct: 749 VTREQRRSAKAINFGLIY 766 >gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51] gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51] Length = 915 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEN 735 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y G F +A G+D +Q Sbjct: 736 VTVDQRRKAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 770 >gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] Length = 861 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 64/239 (26%), Positives = 98/239 (41%), Gaps = 51/239 (21%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 +S +GR+ T G + TGR S QN+P T+T + Sbjct: 584 LSINGRIHTTYNQTGTA-TGRLSSSNPNLQNIP---------TRTYEGTK---------- 623 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R IAS G KLV D + IE RVLA I+ ++ I A+ + D++ T K F Sbjct: 624 -----IREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINAYKHNLDLHELTARKIFM 678 Query: 419 TPID-KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 D KVSK QR I KV+ ++ Y G +K K S L + + + Sbjct: 679 LKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAKLYINTYFKEYPKVRILL 738 Query: 474 D--WEQAE-------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D E+A+ S ++ +++Q AV + GTA ++KK + Sbjct: 739 DDIIEKAKKDGYVETKFGTRRYVYDINSSNINIKEQAKRMAVNTVIQGTAANIIKKVMK 797 >gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 930 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 691 IRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 751 VTNEQRRSAKAINFGLIY 768 >gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 932 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++K Sbjct: 692 IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTNEQRRSAKAINFGLIY 769 >gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11] Length = 932 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++K Sbjct: 692 IRQAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEK 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTNEQRRSAKAINFGLIY 769 >gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] Length = 873 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 27/141 (19%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ T + TGR S QN+P R E +I Sbjct: 597 DGRIHSTFN-QTITATGRISSTEPNLQNIPIRMELGRKI--------------------- 634 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 R + +G + AD + IE R+LA ++G+D I+A+ DI+ T +K F TP Sbjct: 635 ----RKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNEDRDIHKITASKVFKTP 690 Query: 421 IDKVSKEQRAIGKVMELALGY 441 +D+V+ QR+ K + + Y Sbjct: 691 LDEVTPRQRSNAKAVNFGIVY 711 >gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1] gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1] Length = 913 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A +D + AF + D++ T A+ F P++ Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS +QR K + L Y G F +A G++ Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765 >gi|317508193|ref|ZP_07965875.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] gi|316253522|gb|EFV12910.1| DNA polymerase family A [Segniliparus rugosus ATCC BAA-974] Length = 602 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 4/103 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C +A G+ + D E RVLA ++G+ I+AFA G+D+++ T AF I K Sbjct: 374 IRRCFLADEGELIASVDYQAQELRVLAALSGDPTMIRAFAEGQDLHLLTARAAFGDHITK 433 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 E R KV+ Y GGA KT++ GL Q V Sbjct: 434 DDPE-RKYAKVVNFGRVYGGGA---KTVSEQTGLGFMAAKQVV 472 >gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 882 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L ++V+ DGR+ TL + TGR S QN+P R+EE G I Sbjct: 597 LIKSVADDGRIHTTL-LQTIAATGRLSSTEPNLQNIPV--RTEE-----------GRRIR 642 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 D + ++ +L+ AD + IE R++A ++ ++ I+AF +GED++ + Sbjct: 643 D----------AFVVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVAS 692 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 +AF+ P ++++ E R K M L Y Sbjct: 693 RAFSMPPEEITPELRYRVKAMSYGLAY 719 >gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55] gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55] Length = 930 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 120/299 (40%), Gaps = 44/299 (14%) Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208 G Y D + T +L ++ P L E L + + G +ID ++ Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHA 556 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + IAQ +L++ ++ S T L+ LF GI + + G S S Sbjct: 557 HSQEIAQRLVELEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614 Query: 269 NITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTGRWSG 322 + +LA D L ++ + KL +T ++ + GR+ T + TGR S Sbjct: 615 VLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATGRLSS 673 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R+EE +R IA +V AD + Sbjct: 674 TDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYVIVSADYS 709 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + + AF+ G+DI+ T A+ F P+D VS EQR K + L Y Sbjct: 710 QIELRIMAHLSRDKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIY 768 >gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4] gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4] Length = 1015 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 68/260 (26%), Positives = 108/260 (41%), Gaps = 36/260 (13%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGI 251 + + G +D + + E ++ +++ K G IRS++Q L LF G+ Sbjct: 624 MEEAGIAVDRTAFAAFLDEVQHELDRITQEVYKAAGGQFNIRSAQQ---LGELLFGTLGL 680 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 V + G ++ S + +L+ DLIL+ L L + V GR+ Sbjct: 681 PTVGKTRGG-QATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDDAGRIH 739 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T A+ TGR S QN+P RG+ LG +RS Sbjct: 740 STFNQL-ATATGRLSSSNPNLQNIP----------------ARGD-----LGRR---MRS 774 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 C A+ G LV AD + IE RVLA ++ + + AF G DI+ T ++T + V+ Sbjct: 775 CFTAAEGNLLVSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTP 834 Query: 427 EQRAIGKVMELALGYQGGAK 446 +QR K + L Y G + Sbjct: 835 DQRRNAKTINFGLIYGMGPQ 854 >gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 913 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A +D + AF + D++ T A+ F P++ Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS +QR K + L Y G F +A G++ Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765 >gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6] gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6] Length = 885 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L+ +++DGR+ T + + TGR S QN+P T L R Sbjct: 600 DGLAACIAADGRIHTTFK-QTITATGRISSTEPNLQNIP-----------TRIELGR--- 644 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R C + +G V AD + IE RVLA ++G++ I+A+ + EDI+ T Sbjct: 645 ----------QIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAIT 694 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+ +V+ R K + + Y Sbjct: 695 ASQVFHVPLSEVTPLMRRNAKAVNFGIVY 723 >gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1] Length = 913 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A +D + AF + D++ T A+ F P++ Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS +QR K + L Y G F +A G++ Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765 >gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] Length = 863 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V DGR+ T AS TGR S QN+P R+E Sbjct: 577 LEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE-------------- 619 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS I G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 620 --------AGRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHN 671 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ P+D+V+ E R K M L Y Sbjct: 672 YVGSKVFDVPVDEVTPELRRRVKAMSYGLVY 702 >gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] Length = 931 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ ID+ Sbjct: 691 IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQ 750 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 751 VSSEQRRRAKAVNFGLIY 768 >gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2] Length = 913 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A +D + AF + D++ T A+ F P++ Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS +QR K + L Y G F +A G++ Sbjct: 734 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765 >gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329] Length = 930 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ ID+ Sbjct: 690 IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQ 749 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 750 VSSEQRRRAKAVNFGLIY 767 >gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] Length = 931 Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ ID+ Sbjct: 691 IRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQ 750 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 751 VSSEQRRRAKAVNFGLIY 768 >gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] Length = 811 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 66/148 (44%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 LS + +DGR+ T + TGR S QN+P R E L R Sbjct: 528 LSAVIEADGRIHSTFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 570 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + +G + AD + IE RVLA ++G++ I+A+ EDI+ T Sbjct: 571 ---------LIRKVFVPEDGYVFLDADYSQIELRVLAHMSGDEKLIQAYREAEDIHRLTA 621 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P D+V+ QR K + + Y Sbjct: 622 SQVFHVPFDEVTDLQRRNAKAVNFGIVY 649 >gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] Length = 909 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 C+R I G ++ AD + IE R++ ++ + ++AF N +D++ T + FN PID Sbjct: 669 CIRGAFITGKGNVIISADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTMFNIPID 728 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E R K + L Y Sbjct: 729 EVTSEYRRRAKAINFGLIY 747 >gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 607 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 68/150 (45%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + ++ D GR+ + GA+ TGR + QN+P R+EE Sbjct: 320 DALQDHINPDSGRVHTSYSIAGAN-TGRLASTDPNLQNIP--VRTEE------------- 363 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK LV D + IE R+LA IA D +AF G DI+ Sbjct: 364 ---------GRRIRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQGLDIHAA 414 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P+D+++ E R K + + Y Sbjct: 415 TASEMFNVPLDQMTPEIRRQAKAINFGVIY 444 >gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] Length = 984 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G+ +V AD + IE R++A ++G+ AF N ED++ T A+ F P + Sbjct: 744 VRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQAAFQNNEDVHRRTAAEVFGVPPEH 803 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++ EQR K + L Y G F +A G+D Sbjct: 804 ITAEQRRYAKTINFGLIY--GMSSFG-LAKALGID 835 >gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] Length = 920 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 11/141 (7%) Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNGKKLVVADLAG 383 PR QT+ A R + +DP G +R C I +G AD + Sbjct: 642 PRTGHIHTSFNQTVTATGRLSS-SDPNLQNIPVRGEDGKEIRKCFIPEDGCLFFSADYSQ 700 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RV+A ++G+ I+AF +G DI+ T AK + + V++++R K + Y Sbjct: 701 IELRVMAHLSGDKHMIEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIY-- 758 Query: 444 GAKVFKTMASHCGLDLQQFSQ 464 G VF +A G+D + Q Sbjct: 759 GITVF-GLAERLGIDRNEAKQ 778 >gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] Length = 845 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 75/294 (25%), Positives = 113/294 (38%), Gaps = 61/294 (20%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L V GRL T A+ TGR S QN+P + Sbjct: 558 LEPLPRKVDVGGRLHTTFNQL-ATATGRLSSSNPNLQNIPIK------------------ 598 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 G +R+C S GK LV AD + IE R+LA ++ + ++AF EDI+ Sbjct: 599 ------GEFGPRMRACFKPSKGKLLVAADYSQIELRILAHMSMDPNLLQAFGGNEDIHRR 652 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKTMASHCGL 457 T F+ I +VS+++R K + L Y G AK F ++ Sbjct: 653 TAGLLFDKDIQEVSQDERRKAKTINFGLLYGMGPQKLSRELSISMEEAKEFISVYFSKLD 712 Query: 458 DLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 ++ F Q ++ + + + S + M Q AV + G+A +++ Sbjct: 713 RVRDFYQQIEEKAQEQGYVTTMAGRRRLLPDINSRNTNMAQQARRTAVNTVIQGSAADVI 772 Query: 507 KKAWRAKHQG----------VLQLWKD-LTEGFACVVQEGGSISARRVANVPRL 549 KKA A VLQ+ + L E A V Q+ G AR +A V L Sbjct: 773 KKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPVAQKAGERLARVMAGVESL 826 >gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] Length = 915 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 118/494 (23%), Positives = 210/494 (42%), Gaps = 94/494 (19%) Query: 6 IDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 +D+ET S P L + + +++ +A DDE + D ++ P L Sbjct: 336 LDVETTSTDPMTARLVGIALATSGQRSFYVPVNHANDDEQLD-ADEVREALSP-----LL 389 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D + AH+ ++ ++ ++ P R +++A ++L LA F+ Sbjct: 390 ADPNTVVYAHHGKYDALVLERA---GYPRPRIAFDTMIAAYLLGENALDLKSLA--FNRL 444 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 +M E LI R + D T VQA G+Y DVEAT L + L P Sbjct: 445 GMEMTEITTLIGR----GRNQLTMDLT---DVQAA---GDYACADVEATYRLVEVLQPDL 494 Query: 182 DGER--------DLWLLDQTINDR--GYRIDLDLVLKLQELIAQERKKLDEDIVKLT--D 229 + ++ ++ L+D I+ G +D+DL+ L + + +L+ +I L + Sbjct: 495 EAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELEREIYGLAKHE 554 Query: 230 GIIRSSRQTYALRMYLFLITGIDL-------VDMSEGTLKSIL-SHSNITQLAKDLILNR 281 I S+RQ L LF G+ +S+ L+++ +H + + + L + Sbjct: 555 FNINSTRQ---LATVLFDELGLPAGRRTKTGYSVSQEVLENLRHAHPIVDCILEYRQLLK 611 Query: 282 LASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 L S+ ++ L E V+ + GR+ + A+ TGR S QN+P R+E Sbjct: 612 LKST-----YVDALPEQVNPETGRIHTSFNQTIAA-TGRLSSTDPNLQNIP--VRTE--- 660 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASN--GKK-------LVVADLAGIEARVLAW 391 L R VR IA N G + L+ AD + IE R++A Sbjct: 661 ------LGR-------------SVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAH 701 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++G++ + AF G+DI+ T A F P+++V+ + R + K + + Y G + + + Sbjct: 702 LSGDERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMY--GMQAYG-L 758 Query: 452 ASHCGL---DLQQF 462 A G+ D Q+F Sbjct: 759 ARDTGMSRQDAQRF 772 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA++G K+V AD + IE R++A ++ + + AFANG D++ T A+ F +++ Sbjct: 671 IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVHSATAAEVFGVELEE 730 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R K + L Y Sbjct: 731 VTSDMRRKAKAVNFGLIY 748 >gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] Length = 949 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + +E R++A ++G+ + AFA+G+DI+ T A+ F PI++ Sbjct: 710 IRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRNMLSAFASGQDIHAATAARIFKVPIEE 769 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R K + Y Sbjct: 770 VTSDMRRKAKTANFGIIY 787 >gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] Length = 896 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%) Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 L++L E V+ GR+ + G TGR S QNLP R E +EI Sbjct: 611 LDSLPELVNKVTGRIHTSYHQTGTG-TGRLSSSNPNMQNLPIRDEEGKEI---------- 659 Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 R C+I G K+V AD + IE R+LA ++ + + AF N +D+ Sbjct: 660 ---------------RKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFKNDKDV 704 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + T + + +VS+EQR IGK++ ++ Y Sbjct: 705 HSLTASNLYGIKESEVSEEQRRIGKMINFSIIY 737 >gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638] gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638] Length = 930 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 72/298 (24%), Positives = 117/298 (39%), Gaps = 42/298 (14%) Query: 160 GEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208 G Y D + T +L ++ P L E L + + I G +ID ++ K Sbjct: 497 GRYAAEDADVTLQLHLKMWPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHK 556 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 E +A +L++ ++ S T L+ LF GI + + G S S Sbjct: 557 HSEELALRLSELEQKAHEIAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEE 614 Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA D L ++ + KL + L ++ T + TGR S Sbjct: 615 VLEELALDYPLPKVILQYRGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGRLSST 674 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R+EE +R IA +V AD + Sbjct: 675 EPNLQNIPV--RNEE----------------------GRRIRQAFIAPKDYLIVSADYSQ 710 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ + + AFA G+DI+ T A+ F P+D V+ +QR K + L Y Sbjct: 711 IELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIY 768 >gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] Length = 931 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ I++ Sbjct: 691 IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQ 750 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + F + ED Sbjct: 751 VSSEQRRRAKAVNFGLIY--GMSAFG-LAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 807 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 + H +++ + PE A+ + GTA +++KKA Sbjct: 808 RSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKA 861 >gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13] gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13] Length = 914 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 5/95 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422 +R IAS G K++ AD + IE R++A ++ + +KAF +G+D++ T ++ F+ TP++ Sbjct: 675 IREAFIASPGNKIISADYSQIELRIMAHLSDDASLLKAFHDGQDVHRATASEIFDITPLE 734 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ +QR KV+ L Y G F +AS+ G+ Sbjct: 735 -VTSDQRRYAKVINFGLIY--GMSAF-GVASNLGI 765 >gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 872 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I S +V AD + IE RVLA ++G++ I++F N EDI++ T ++ F P++KV Sbjct: 634 RAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKV 693 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 694 TPEMRRAAKAVNFGIIY 710 >gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2] Length = 888 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 24/148 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + V+ DGR+ T Q A+ TGR S QN+P R E I R I Sbjct: 603 LLKTVAEDGRIHTTYQQTVAA-TGRLSSLDPNLQNIPVRTESGRRI---------REIFI 652 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 ADP + +L+ AD + IE R++A ++G+ I+AF +GED++ Sbjct: 653 ADP-------------HVDDARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVG 699 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F ID+V R+ K M L Y Sbjct: 700 SKVFGVGIDEVDSAMRSKVKAMSYGLVY 727 >gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6] gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6] Length = 931 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ I++ Sbjct: 691 IRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQ 750 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + F + ED Sbjct: 751 VSSEQRRRAKAVNFGLIY--GMSAFG-LAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 807 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 + H +++ + PE A+ + GTA +++KKA Sbjct: 808 RSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKA 861 >gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] Length = 911 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA++G K+V AD + IE R++A ++ + + AFANG D++ T A+ F +++ Sbjct: 671 IREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANGLDVHSATAAEVFGVSLEE 730 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R K + L Y Sbjct: 731 VTSDMRRKAKAVNFGLIY 748 >gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae] Length = 936 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K+V AD + IE R++A ++ + + AFA G+DI+ T A+ F + Sbjct: 697 IRQAFIAREGYKIVAADYSQIELRIMAHLSQDKGLLDAFAEGQDIHRATAAEVFGVLLTD 756 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 757 VTNEQRRSAKAINFGLIY 774 >gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B] gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B] Length = 935 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G L+ D + IE R+LA +AG D +AFA+G DI+ T ++ F+ P+++ Sbjct: 695 IREAFVAEEGNVLLSLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEE 754 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 755 MTPEIRRKAKAINFGVIY 772 >gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] Length = 872 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I S +V AD + IE RVLA ++G++ I++F N EDI++ T ++ F P++KV Sbjct: 634 RAFIPRSRDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKV 693 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 694 TPEMRRAAKAVNFGIIY 710 >gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9] Length = 960 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382 PR R TQT+ A R ++ DP +RS + G L+ AD + Sbjct: 680 PRDGRIHTTFTQTVAATGRLSSV-DPNLQNIPNRNATGRDIRSAFVPGEGFADLLSADYS 738 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +E R++A ++G++ IKAF +G D + + + P+D+V+ +QR K M L Y Sbjct: 739 QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAY 797 >gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908] gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908] Length = 945 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GKK++ AD + IE R++A ++ + + AFA G+DI+ T A+ F + Sbjct: 705 IRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVDFSE 764 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 765 VTTEQRRRAKAVNFGLIY 782 >gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] Length = 930 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA +V AD + IE R++A ++G+ I+AF NGED++ T A+ F + Sbjct: 689 VRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEAFKNGEDVHRRTAAEVFGMQPEN 748 Query: 424 VSKEQRAIGKVMELALGY 441 ++ EQR K + L Y Sbjct: 749 ITPEQRRYAKTINFGLIY 766 >gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] Length = 907 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G ++V AD + IE R++A ++ + + AF D++ T A+ F P+D Sbjct: 668 IRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPGLLAAFRENLDVHSATAAEVFGVPLDS 727 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 728 VSGEQRRKAKAINFGLIY 745 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + ++ + AF +G+D++ T A+ N P+++ Sbjct: 683 IRKAFIAPEGRILLAADYSQIELRLMAHFSQDEALLDAFQHGQDVHRRTAAEVLNIPLEE 742 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 743 VTNDQRRQAKAVNFGLLY 760 >gi|289178749|gb|ADC85995.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis BB-12] Length = 297 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382 PR R TQT+ A R ++ DP +RS + G L+ AD + Sbjct: 17 PRDGRIHTTFTQTVAATGRLSSV-DPNLQNIPNRNATGRDIRSAFVPGEGFADLLSADYS 75 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +E R++A ++G++ IKAF +G D + + + P+D+V+ +QR K M L Y Sbjct: 76 QVELRIMADLSGDEALIKAFKSGADFHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAY 134 >gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021] gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021] Length = 1004 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A+ G KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P+D Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 821 MPSEIRRRAKAINFGIIY 838 >gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM] gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM] Length = 933 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 25/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + GAS TGR + QN+P RSEE Sbjct: 657 GRVHTSYVQTGAS-TGRLASTDPNLQNIPV--RSEE----------------------GR 691 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A GK+LV D + IE R+LA +AG D +AF +G DI+ T ++ F P+D Sbjct: 692 RIREAFVADAGKRLVSLDYSQIELRILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLD 751 Query: 423 KVSKEQRAIGKVMELALGY 441 +++ + R K + + Y Sbjct: 752 EMTSDVRRRAKAINFGVIY 770 >gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C] gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C] Length = 1004 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A+ G KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P+D Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 821 MPSEIRRRAKAINFGIIY 838 >gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB] gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB] Length = 906 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G +V AD + IE R++A ++G++ + AFA+GED++ T + F + Sbjct: 667 IRTAFIAPAGSSIVSADYSQIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIFGVTPLE 726 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V +QR + K + L Y G F +A GL+ Sbjct: 727 VGPDQRRVAKSINFGLIY--GMSAFG-LARQLGLE 758 >gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19] gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19] Length = 959 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 58/105 (55%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE R+LA I + KAF++G+DI+ T ++ F P+ Sbjct: 716 IRTAFIAKPGCKLISADYSQIELRLLAHIGDIEQLKKAFSDGQDIHAMTASEMFGVPMAD 775 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ E R K + + Y G F +A+ G+D + S+ +K+ Sbjct: 776 MTSEIRRRAKAINFGIIY--GISGFG-LANQLGIDQGEASRYIKT 817 >gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] Length = 932 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/150 (29%), Positives = 69/150 (46%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + V+++ GR+ GA+ TGR + QN+P RSEE Sbjct: 645 DALQDHVNANTGRVHTCYSIAGAA-TGRLASTDPNLQNIPI--RSEE------------- 688 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK LV D + IE R+LA IA D +AF G+DI+ Sbjct: 689 ---------GRRIREAFVAPEGKVLVALDYSQIELRILAHIAQIDALKEAFERGDDIHAM 739 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+ P+D+++ E R K + + Y Sbjct: 740 TASEMFDVPMDQMTPEIRRNAKAINFGVIY 769 >gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1] gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1] Length = 915 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F + Sbjct: 676 IRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALQD 735 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y G F +A G+D +Q Sbjct: 736 VTTDQRRKAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 770 >gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] Length = 887 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ ID+ Sbjct: 647 IRQAFIAPSGWKIMAVDYSQIELRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQ 706 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 707 VTSEQRRRAKAVNFGLIY 724 >gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799] gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799] Length = 922 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ D + IE R++A ++ + ++AFA G+DI+ T A+ F D Sbjct: 682 IRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDKGLLEAFAAGKDIHKATAAEVFGVDFDS 741 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V+ EQR K + L Y G AK + + ++ + D +A+ Sbjct: 742 VTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIGRAEAQEYIDRYFHRYPGVLEYMDRTRAQ 801 Query: 480 SH-------------HL-------WMQDQYPE-FAVKDKLIGTACELVKKAW 510 +H HL M+ Q E A+ + GTA +++KKA Sbjct: 802 AHDKEYVETLMGRRLHLPEINARNKMRQQAAERTAINAPMQGTAADIIKKAM 853 >gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] Length = 932 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 43/81 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A G +V AD + IE R++A ++G+ + AF NGED++ T A+ F + Sbjct: 691 VRRAFTAPAGSLIVSADYSQIELRIMAHLSGDKTLMAAFQNGEDVHRRTAAEVFGIAPEN 750 Query: 424 VSKEQRAIGKVMELALGYQGG 444 VS EQR K + L Y G Sbjct: 751 VSPEQRRYAKTINFGLIYGMG 771 >gi|42561209|ref|NP_975660.1| DNA polymerase I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492707|emb|CAE77302.1| DNA POLYMERASE I [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301321190|gb|ADK69833.1| DNA-directed DNA polymerase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 911 Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR I +N K + D + IE RVLA ++ E IKAF DI++ FN D+ Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQDADIHLQAAKLIFNLSDDQ 720 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ EQR I KV + Y G F +A+ +++ Q Q +K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLANDLNMNVNQAKQMIK 761 >gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] Length = 865 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 28/166 (16%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GRL + GA+ TGR S QN+P I LG Sbjct: 590 GRLHTSFNQTGAA-TGRLSSSNPNLQNIP---------------------IRTSLGRE-- 625 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ + +G KL+VAD + IE R+LA ++G++ ++AF GEDI+ T A+ P Sbjct: 626 -IRAAFVPRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPL 684 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 V+ E R K + + Y G F +A+ G+ + + +K+ Sbjct: 685 MVTPEARRDAKAVNFGIVY--GISAF-GLAAQLGIGRAEAERYIKN 727 >gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 576 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 40/216 (18%) Query: 250 GIDLVDMSEGTL----KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 G++L + +G + K++ S++ ++ L + R+ A+ KL L + +GR+ Sbjct: 256 GLELPETQKGNISTDDKTLAEFSHVKEVRDILEIRRIKK---ALDKLKELKGFIR-NGRV 311 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + GA TGR S QN+PR +R Sbjct: 312 YPEFRQIGAV-TGRMSSSNPNVQNIPRD------------------------------MR 340 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 S AS G V+AD + IE R+ A ++ ++AF G D++ T + P ++++ Sbjct: 341 SLFRASEGNLFVIADFSQIELRIAAEYVQDENMLRAFREGRDLHRYTASLVLEKPEEEIT 400 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQ 460 KE+R + K M L Y A+ A S G++L+ Sbjct: 401 KEERQLAKAMNFGLIYGISARGLSEYARSSYGVELE 436 >gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83] gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83] Length = 1004 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A+ G KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P+D Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 821 MPSEIRRRAKAINFGIIY 838 >gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel] gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel] Length = 875 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN P DK Sbjct: 638 IRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDDIHTQTACQIFNLPKDK 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 698 LTSKHRRKAKAINFGIIY 715 >gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10] gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10] Length = 896 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I +N +++ AD + IE RVLA I G+ I+AF N EDI+ TT +K F P + Sbjct: 656 IRKVFIPTNSDYVLLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVFGIPPE 715 Query: 423 KVSKEQRAIGKVMELALGYQGG 444 +VS R+ K + + Y G Sbjct: 716 EVSSLMRSRAKAVNFGIVYGIG 737 >gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666] gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666] Length = 944 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G + AD + IE R++A ++ ++ ++AF G D++ T A+ F +D+ Sbjct: 705 VREAFVAPAGSVIASADYSQIELRIMAHLSEDEALLRAFTEGLDVHRATAAEVFGVAVDQ 764 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 765 VSSEQRRYAKVINFGLIY 782 >gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032] gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032] Length = 966 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 727 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPLES 786 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 787 VSNEQRRSAKAINFGLIY 804 >gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4] gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4] Length = 930 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F+ + Sbjct: 690 IRHAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSE 749 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 750 VTSEQRRRAKAVNFGLIY 767 >gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2] gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2] Length = 928 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 28/151 (18%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 L T+ + V DGR+ T + TGR S QN+P R ER +EI Sbjct: 666 LPTMKDPV--DGRVH-TSYMQTVTATGRLSSNNPNLQNIPIRSERGKEIR---------- 712 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R+ I S +L+ AD + IE R++A +A + I+AF + DI+ Sbjct: 713 --------------RAFIARSKDFQLMSADYSQIELRIIAALADDTNMIQAFKDKVDIHR 758 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T AK F+ +D V+K+QR+ K + + Y Sbjct: 759 ATAAKVFHVELDDVTKDQRSAAKAVNFGIIY 789 >gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 437 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 270 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 329 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 330 VTGEQRRSAKAINFGLIY 347 >gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894] gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894] Length = 927 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 688 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLSAFAEGKDIHRATAAEVFGLPLES 747 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 748 VSNEQRRSAKAINFGLIY 765 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ D + I+ RVLA ++ + I+AF + +DI+ T A+ N P K Sbjct: 664 IRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPSK 723 Query: 424 VSKEQRAIGKVMELALGY 441 V+KEQR + K + + Y Sbjct: 724 VTKEQRRLAKTVNFGVIY 741 >gi|260889284|ref|ZP_05900547.1| DNA polymerase I [Leptotrichia hofstadii F0254] gi|260860695|gb|EEX75195.1| DNA polymerase I [Leptotrichia hofstadii F0254] Length = 370 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 65/113 (57%), Gaps = 6/113 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA-FNTPID 422 +R+ +A G L+ D + IE RVLA ++ + +KA+ + +D++ T K F T D Sbjct: 130 IRTGFVAKEGHSLISFDYSQIELRVLAELSKDRHLVKAYQDNQDLHDLTARKIFFKTEED 189 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 ++S+ +R+I KV+ ++ Y G F ++ G+ +Q+ SQ + T+ FE++ Sbjct: 190 EISRHERSIAKVINFSILY--GKTPF-GLSKELGITVQEASQYI--TTYFEEY 237 >gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8] gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8] Length = 942 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ + ++AFAN EDI+ T A+ F Sbjct: 703 IREAFIAPPGSHIVSADYSQIELRIMAHLSKDAGMLQAFANNEDIHRATAAEIFGVERSA 762 Query: 424 VSKEQRAIGKVMELALGY 441 V EQR KV+ L Y Sbjct: 763 VDNEQRRYAKVINFGLIY 780 >gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233] gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233] Length = 902 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 84/193 (43%), Gaps = 43/193 (22%) Query: 253 LVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 LV + E T L +L H ++T+L + + L ++V DGR+ T Sbjct: 586 LVSLHEQTGHPFLTHLLRHRDVTRLK---------------VTVEGLRKSVGDDGRIHTT 630 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 Q A+ TGR S QN+P R++E G I R+ + Sbjct: 631 FQQTVAA-TGRLSSTEPNLQNIPI--RTDE-----------GRLIR----------RAFV 666 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 L+ AD + IE R++A ++ ++ I+AF +GED++ KAF P ++V+ E Sbjct: 667 PGPQADLLLTADYSQIEMRIMATLSEDEGLIEAFRSGEDLHTFVAMKAFGLPAEQVTPEL 726 Query: 429 RAIGKVMELALGY 441 R K M L Y Sbjct: 727 RRRIKAMSYGLAY 739 >gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] Length = 879 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L A+ DGR+R T GA+ TGR S QN+P R+E Sbjct: 591 IDGLINAIDGDGRIRTTFNQKGAA-TGRLSSSEPNLQNIPV--RTE-------------- 633 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 634 --------AGRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHN 685 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V+ E R K + L Y Sbjct: 686 YVGSRVFDVPVDEVTPELRRRVKALSYGLVY 716 >gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] Length = 934 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 694 IRQAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFAEGKDIHRATAAEVFGLPLEN 753 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 754 VTTEQRRSAKAINFGLIY 771 >gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] Length = 848 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 39/75 (52%) Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 C+ A G V AD + IE RVLA ++GE + F G DI+ T A P D V+K Sbjct: 615 CLTAGPGGVFVAADYSQIELRVLAHLSGERRLREIFEAGRDIHTETAAMILGIPADSVTK 674 Query: 427 EQRAIGKVMELALGY 441 EQR + K + L Y Sbjct: 675 EQRRMAKTVTFGLLY 689 >gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25] gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25] gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25] gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25] Length = 928 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I++ Sbjct: 688 IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGLDIEQ 747 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 748 VSSEQRRRAKAVNFGLIY 765 >gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1] gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1] Length = 965 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA+ G L+ AD + IE RVLA + G+ I+ F G DI+ T A+ F Sbjct: 719 VRRGFIAAPGHLLIAADYSQIELRVLAHMTGDPNLIQTFIEGRDIHAATAARLFGVGFSA 778 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V K QR I K + + Y G F +A G+ +Q Sbjct: 779 VDKNQRRIAKTVVFGVIY--GISPFG-LAQRLGISREQ 813 >gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] Length = 857 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 363 CVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +RS + G ++ D + +E RVLA ++G++ I+AF N EDI+ T ++ F P Sbjct: 616 VIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPF 675 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V+ EQR+ K + + Y Sbjct: 676 EEVTSEQRSHAKAVNFGIIY 695 >gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR] gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR] Length = 921 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR I G K+V D + IE R++A ++ ++ +KAFA G DI+ T A+ F D+ Sbjct: 680 VRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESLLKAFAEGLDIHRATAAEVFGCKADE 739 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 740 VSNDQRRQAKAVNFGLIY 757 >gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074] gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074] Length = 908 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +++++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 623 LIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP-------VRTDEGRAIRRG---- 670 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 671 ------------FVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVAS 718 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F D V E R K M L Y Sbjct: 719 QVFGVERDAVDAEMRRKIKAMSYGLAY 745 >gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 857 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 1/80 (1%) Query: 363 CVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +RS + G ++ D + +E RVLA ++G++ I+AF N EDI+ T ++ F P Sbjct: 616 VIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTASEVFGVPF 675 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V+ EQR+ K + + Y Sbjct: 676 EEVTSEQRSHAKAVNFGIIY 695 >gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345] gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345] Length = 918 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GKK++ AD + IE R++A ++ + + AFA G+DI+ T A+ F+ + Sbjct: 678 IRHAFIAPEGKKILAADYSQIELRIMAHLSQDTGLLTAFAEGKDIHKATAAEVFDVDFSE 737 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 738 VTSDQRRRAKAVNFGLIY 755 >gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4] gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4] Length = 899 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 29/164 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + + D R+ T A+ TGR S QN+P R E I RG + Sbjct: 614 LIKTIGDDRRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRTEDGRRI---------RGSFV 663 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +G DC L+ AD + IE RV+A ++G+ I+AF GED++ Sbjct: 664 ---VGEGYDC------------LLTADYSQIEMRVMAHLSGDAGLIEAFRTGEDLHSFVG 708 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++AF PID+V+ E R K M L Y G F +A+ G+ Sbjct: 709 SRAFGVPIDQVTPELRRRVKAMSYGLAY--GLSAFG-LAAQLGI 749 >gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1] gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1] Length = 850 Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 66/275 (24%), Positives = 106/275 (38%), Gaps = 63/275 (22%) Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA D RL + KLN+ L+ + D R+ GT + TGR S Sbjct: 537 LEKLASDWPAVRLILDYRQLTKLNSTYADGLAAYIGPDERIHGTFN-QTITATGRISSTE 595 Query: 325 FQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P R E EI R + G + AD + Sbjct: 596 PNLQNIPVRMELGREI-------------------------RKVFVPQEGCVFIDADYSQ 630 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL---- 439 IE RVLA ++G+ I A+ EDI+ T ++ F+ P+ +V+ QR K + + Sbjct: 631 IELRVLAHMSGDQRLIGAYKQAEDIHAITASQVFHVPLHEVTPLQRRNAKAVNFGIVYGI 690 Query: 440 ---GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 G G + + AS ++++ + TF D AE+ L Sbjct: 691 SSFGLSEGLSITRKEASEY---IEKYFETYPGVKTFLDGLVAEAKELGYAASMFGRRRPV 747 Query: 484 -------WMQDQYPE-FAVKDKLIGTACELVKKAW 510 +MQ + E A+ + GTA +++K A Sbjct: 748 PELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 782 >gi|149916870|ref|ZP_01905371.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1] gi|149822148|gb|EDM81539.1| hypothetical protein PPSIR1_21519 [Plesiocystis pacifica SIR-1] Length = 590 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 2/110 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+C + + G +L+VAD A IE RV A +A D F G D + T A P + Sbjct: 351 LRACFVPAPGHRLIVADYAQIELRVAAHLAPCDALGAVFRAGRDPHRATAATLTGKPEPE 410 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKT-MASHCGLDLQQFSQNVKSTSTF 472 V +R + K + + GA+ F++ AS GLDL + Q ++ F Sbjct: 411 VESHERKLAKAVNFGFLFGMGARRFRSYAASGYGLDLDE-RQAAEAREAF 459 >gi|225352868|ref|ZP_03743891.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156300|gb|EEG69869.1| hypothetical protein BIFPSEUDO_04504 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 244 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 26/154 (16%) Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 I + S + SDGR+ T + A+ TGR S QN+P N Sbjct: 1 INRTQPTSRSHRSDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP----------------N 43 Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 R DP G +RS + G + L+ +D + +E R++A ++G++ I+AF +G D Sbjct: 44 R-----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGRD 95 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + + + P+D+++ +QR+ K M L Y Sbjct: 96 FHKYVASLVYGVPVDEITPDQRSHVKAMSYGLAY 129 >gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] Length = 918 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GKK++ AD + IE R++A ++ + + AFA G+DI+ T A+ F+ + Sbjct: 678 IRHAFIAPEGKKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSE 737 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 738 VTTDQRRRAKAVNFGLIY 755 >gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516] gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516] Length = 933 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GK LV D + IE R+LA +AG D +AF +G+DI+ T ++ FN P+++ Sbjct: 693 IREAFVADLGKVLVSLDYSQIELRILAHVAGLDALREAFRSGQDIHAATASEMFNVPLEE 752 Query: 424 VSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 753 MTPDVRRQAKAINFGVIY 770 >gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] Length = 878 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R C + G V AD + IE R+LA ++G++ + AF +G D + T A+ F+ P+D Sbjct: 638 IRECFVPLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFDVPVD 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ + R+ K + + Y Sbjct: 698 EVTPQLRSRAKAVNFGIVY 716 >gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B] gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B] Length = 928 Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ Sbjct: 688 IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 747 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 748 VSSEQRRRAKAVNFGLIY 765 >gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata] gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata] Length = 1786 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 65/301 (21%), Positives = 125/301 (41%), Gaps = 42/301 (13%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIV-KLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G ++D D + LQ+ + QE +++ D+ +L I + Q L + + ++D Sbjct: 1413 GIKVDEDKLRILQDELKQEHQEISNDLYSQLNHSEINLNSQKQVLEK----LQELKIMDR 1468 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQF 311 S+ + S S S + + + I++ L A L ++ + + R+ Sbjct: 1469 SKKKIISDTSESTLIRNMSNPIISSLREYRKANKALTAFTQKLPNHINPITKRIYPNYNQ 1528 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA +GR+S Q +PR ++ R C +A Sbjct: 1529 LGA-ESGRFSCDGPNLQQVPRDKK----------------------------FRECFVAP 1559 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G K V+AD + IE R+ A IA + I+A+ D++ T + N I++V+KE+R + Sbjct: 1560 KGSKFVIADFSQIELRIAAEIANDPKMIQAYQQNVDLHSLTASILKNKSINEVNKEERQL 1619 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS--TSTFEDWEQAESHHLWMQDQY 489 K + L + + M + G +L+ K TS F +++ + H +++ Sbjct: 1620 AKAVNFGLIFGMSINGLR-MYAETGYNLKLTQTEAKEIYTSFFNNFKGILNWHNSVKNSR 1678 Query: 490 P 490 P Sbjct: 1679 P 1679 >gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] Length = 932 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 25/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+TL +DGR+ T + TGR S QN+P RSE Sbjct: 648 LDTLGALRETDGRVHTTYN-QTITATGRLSSSNPNLQNIPT--RSE-------------- 690 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 LG A V+ G V D + IE R+LA ++G++ + AF GED + Sbjct: 691 -----LGHA---VKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAE 742 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ F P+++V+ + R+ K + + Y Sbjct: 743 TAARVFGVPVEEVTPQLRSRAKAVNFGIVY 772 >gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440] gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440] Length = 899 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L ++VS DGR+ T A+ TGR S QN+P R+EE G Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-----------GR 656 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I R+ ++ + + L+ AD + IE R++A ++ ++ I AF +G D + Sbjct: 657 RIR----------RAFVVGTGYECLLTADYSQIEMRIMAHLSADEALIDAFNSGLDFHAA 706 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F P++ V+ +QR K M L Y Sbjct: 707 TASSVFQVPVEAVTADQRRKIKAMNYGLAY 736 >gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] Length = 929 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R++A ++ ++ + AF N D++ T A+ F + Sbjct: 690 IRQAFIAPPGYKLLAADYSQIELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKD 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y GA + + G+D +Q Sbjct: 750 VTSDQRRSAKAINFGLIYGMGA---QKLGKDIGVDTKQ 784 >gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] Length = 872 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 46/77 (59%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I + +V AD + IE RVLA ++G++ I++F N EDI++ T ++ F P++KV Sbjct: 634 RAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKV 693 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 694 TPEMRRAAKAVNFGIIY 710 >gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419] gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419] Length = 1004 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A+ G KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P+D Sbjct: 761 IRTAFVATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 820 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 821 MPGEIRRRAKAINFGIIY 838 >gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217] gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217] Length = 921 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++ Sbjct: 681 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGAHFEE 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 741 VTTEQRRRAKAVNFGLIY 758 >gi|83319510|ref|YP_424604.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283396|gb|ABC01328.1| DNA polymerase I [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 911 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR I +N K + D + IE RVLA ++ E I AF DI++ FN D+ Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ EQR I KV + Y G F +AS +++ Q Q +K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNMNVNQAKQMIK 761 >gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] Length = 918 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++ Sbjct: 678 IRQAFIAPAGRKILAADYSQIELRIMAHLSQDAGLLTAFAEGKDIHKATAAEVFGVHFEE 737 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 738 VTTEQRRRAKAVNFGLIY 755 >gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PID 422 +R+ IA G LV AD + IE R++A ++ + ++AFA GED++ T A+ F P+D Sbjct: 683 IRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEAFAQGEDVHRATAAEIFGVRPVD 742 Query: 423 KVSKEQRAIGKVMELALGY 441 V +QR + KV+ L Y Sbjct: 743 -VGPDQRRVAKVINFGLIY 760 >gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] Length = 923 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 60/118 (50%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G + AD + IE R++A ++G+ I+AF +DI+ T AK + ++ Sbjct: 684 IRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRANQDIHAATAAKIYKEKLED 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V++EQR+ K + Y G VF +A G+D ++ + + FE++ + + Sbjct: 744 VTREQRSKAKTANFGIIY--GISVF-GLAERLGIDRKEAKELID--GYFENYPHVKEY 796 >gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] Length = 887 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L +V DGR+ T + AS TGR S QN+P + Sbjct: 601 LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTD---------------- 643 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ +GED++ Sbjct: 644 --------AGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLHN 695 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ ID+V+ E R K M L Y Sbjct: 696 YVGSKVFDVGIDEVTPELRRRVKAMSYGLAY 726 >gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567] gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567] Length = 955 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 20/148 (13%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L +A +DGR+ T Q AS TGR S QN+P R + I RG I Sbjct: 664 LQKAAVTDGRVHTTFQQNAAS-TGRLSSTAPNLQNIPIRTDEGRRI---------RGAFI 713 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 P L D V + L+ AD + IE R++ +A ++ I+A+A+GED++ Sbjct: 714 VAPKVL--DGVEY-------EGLLTADYSQIEMRIMVHLAADEKLIQAYADGEDLHRYVG 764 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F ++V+ + RA K M L Y Sbjct: 765 SEVFGVAPEEVTPQMRAKVKAMSYGLAY 792 >gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074] Length = 897 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +++++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 612 LIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIP-------VRTDEGRAIRRG---- 659 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 660 ------------FVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVAS 707 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F D V E R K M L Y Sbjct: 708 QVFGVERDAVDAEMRRKIKAMSYGLAY 734 >gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC 35316] gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316] Length = 930 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 691 IRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGQDIHRATAAEVFGLPLES 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 751 VTNEQRRSAKAINFGLIY 768 >gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg] gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg] Length = 994 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 27/144 (18%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357 V DGR+ GT A+ TGR S QN+P R E +I Sbjct: 715 VEGDGRIHGTFNQTIAA-TGRLSSTEPNLQNIPIRMELGRKI------------------ 755 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R I +G + AD + IE R+LA ++ + I+A+ +DI+ T ++ F Sbjct: 756 -------RKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHRLTASEVF 808 Query: 418 NTPIDKVSKEQRAIGKVMELALGY 441 +TP D+V+ QR+ K + + Y Sbjct: 809 HTPFDEVTSAQRSNAKAVNFGIVY 832 >gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 887 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L +V DGR+ T + AS TGR S QN+P + Sbjct: 601 LEGLIRSVGGDGRIHTTFKQTVAS-TGRLSSTDPNLQNIPVRTD---------------- 643 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS + G + L+ AD + IE RV+A ++ + I+A+ +GED++ Sbjct: 644 --------AGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLHN 695 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ ID+V+ E R K M L Y Sbjct: 696 YVGSKVFDVGIDEVTPELRRRVKAMSYGLAY 726 >gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] Length = 920 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I +G AD + IE RV+A ++G+ I+AF G DI+ T AK + + Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHMIEAFQEGYDIHAATAAKMYGKEMKD 740 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V++++R K + Y G VF +A G+D + Q + F + Q +S+ Sbjct: 741 VTRDERTKAKRANFGIIY--GITVF-GLAERLGIDRGEAKQLID--GYFTTFPQVQSYME 795 Query: 484 WMQD 487 +D Sbjct: 796 QAKD 799 >gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] Length = 954 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G + AD + IE R++A ++G+ I+AF G+DI+ T AK + ++ Sbjct: 715 IRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFQKGQDIHAATAAKIYKEKLED 774 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V++EQR+ K + Y G VF Sbjct: 775 VTREQRSKAKTANFGIIY--GISVF 797 >gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 933 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F+ + Sbjct: 693 IRHAFIAREGRKVLAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFTE 752 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 753 VTTEQRRRAKAVNFGLIY 770 >gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7] gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7] Length = 917 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R++A +A ++ + AF + D++ T A+ F P++ Sbjct: 678 IRQAFIAPQGYKLLAADYSQIELRIMAHLAKDEGLLDAFRHDLDVHRATAAEVFGVPLED 737 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS +QR K + L Y G F +A G++ Sbjct: 738 VSGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 769 >gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] Length = 932 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/305 (24%), Positives = 121/305 (39%), Gaps = 59/305 (19%) Query: 161 EYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +Y D E T L++RL P ER + + + RG ++D D + ++ Sbjct: 500 KYAAEDAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRMS 559 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 AQ+ L+ +I +L G + L LF G + G +S Sbjct: 560 NAFAQKMAGLEAEIHELA-GESFNVGSPAQLGEILFEKMGFE-----GGKTGKSGKYSTP 613 Query: 271 TQLAKDLI--------------LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 + +DL L++L S+ + L+ + E GR+ + GA+ Sbjct: 614 ADVLEDLATEHDLPRRVLDWRQLSKLKSTYTDALQDHINPET----GRVHTSYSIAGAN- 668 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR + QN+P RSEE +R +A G L Sbjct: 669 TGRLASTDPNLQNIPV--RSEE----------------------GRRIREAFVAEPGHVL 704 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V D + IE R+LA IAG D AF +G DI+ T ++ F+ P+D+++ E R K + Sbjct: 705 VSLDYSQIELRILAHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAIN 764 Query: 437 LALGY 441 + Y Sbjct: 765 FGVIY 769 >gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896] Length = 872 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G LV AD + IE RVLA +A E I+ F DI+ T ++ F+ P+++ Sbjct: 633 LRKVFVAKEGYVLVDADYSQIELRVLAHMAQEKKMIEGFHGSMDIHTKTASEVFSVPVEE 692 Query: 424 VSKEQRAIGKVMELALGY 441 V+KE R+ K + + Y Sbjct: 693 VTKELRSAAKAVNFGIVY 710 >gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] Length = 882 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A KLV AD + +E RVLA ++G++ I AF +GEDI+ T ++ F+ I Sbjct: 643 IRKVFVADENCKLVDADYSQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKD 702 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + + Y Sbjct: 703 VTSKQRIEAKAINFGIIY 720 >gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] Length = 942 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 86/319 (26%), Positives = 133/319 (41%), Gaps = 65/319 (20%) Query: 161 EYCKRDVEAT---RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 E +R +EA +L+ R+ +PL + D+ L G R+D + + +L AQ Sbjct: 515 ERLQRQLEAEPALHDLYYRVELPLIEVLTDMEL-------TGIRLDQEYLRELGRHFAQR 567 Query: 217 RKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGID-----LVDMSEG----TLKSIL 265 L E I + G I S +Q L LF GID L + G T + + Sbjct: 568 IADLVERIYQQAGGPFNINSGQQ---LNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLE 624 Query: 266 SHSNITQLAKDLI----LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 S + +A D++ L +L S+ ++ L + V+ GR+ + GA+ TGR Sbjct: 625 ELSQLYPIAADILTYRQLTKLKST-----YIDALPDLVNPRTGRIHTSYNQLGAA-TGRL 678 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R E EI R +A G + V A Sbjct: 679 SSNNPNLQNIPVRTEEGREI-------------------------RRAFVAEPGWRFVAA 713 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA ++G++ I AF G DI+ T ++ F V K QR + K + + Sbjct: 714 DYSQIELRVLAHMSGDENLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGV 773 Query: 440 GYQGGAKVFKTMASHCGLD 458 Y G F +A G++ Sbjct: 774 IY--GISAFG-LAQRLGIE 789 >gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220] gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972] gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972] Length = 932 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ ID+ Sbjct: 692 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGISIDQ 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTSEQRRRAKAVNFGLIY 769 >gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43] gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43] Length = 980 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 25/171 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A G L+ AD + IE RVLA +A +AFA+G DI+ T ++ F PI+ Sbjct: 737 IRTAFVAEPGNVLISADYSQIELRVLAHVANIPQLTQAFADGVDIHAMTASEMFGVPIEG 796 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 + E R K + + Y G A S G ++++ + + D +AE Sbjct: 797 MPSEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIRKYFERFPGIKDYMDATKAE 856 Query: 480 SHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKA 509 + + YPE A+ + G+A +++++A Sbjct: 857 AKENGYVTTIFGRRAHYPEIRSSNPQVRAFNERAAINAPIQGSAADIIRRA 907 >gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN] gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN] Length = 926 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 75/295 (25%), Positives = 125/295 (42%), Gaps = 41/295 (13%) Query: 162 YCKRDVEATRELFKRLIPL---SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 Y D + T ++ L PL D R ++ L+ ++ YRI+ + VL +AQ+ Sbjct: 496 YSCEDSDQTLDVHLALWPLLQADDKLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSH 555 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSEGTLKSILSHSNITQ 272 +L + I++L + Q + L F G+ +V + +S + + Sbjct: 556 ELGQRILQLETEAYEIAGQPFNLSSPKQLGEIFFDKLGMPVVKKTATGARST-DEEVLEK 614 Query: 273 LAKDLILNRLASSGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 LA+D L ++ KL + L++ A+ GR+ T + TGR S Sbjct: 615 LAEDYPLPAKLLEHRSLTKLKGTYTDKLAQLALPRTGRVH-THYAQAVAVTGRLSSNDPN 673 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P +T + E P G C+IAS AD + IE Sbjct: 674 LQNIP---------IRTAEGRRVREAFVAPPG--------CVIAS-------ADYSQIEL 709 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A I+G+ + AF G D++ T A+ F +D+V+ EQR KV+ L Y Sbjct: 710 RIMAHISGDHALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIY 764 >gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 932 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ ID+ Sbjct: 692 IRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEILGISIDQ 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 752 VTSEQRRRAKAVNFGLIY 769 >gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] Length = 930 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G L+ AD + IE R+LA + ++ + AF G DI+ T AK F D Sbjct: 690 IRKAFVPREGWTLLAADYSQIELRILAALTADEGLLTAFREGRDIHTATAAKIFEVDADT 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 VS++QR+ K++ + Y G F +A G + +QN+ Sbjct: 750 VSRDQRSTAKMVNFGIPY--GISAFG-LAQRLGTVSRTEAQNI 789 >gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] Length = 907 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 26/167 (15%) Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 DLILN + + L E + DG++ Q + TGR S QN+P R Sbjct: 604 DLILNYRQLNKLQSTYVEGLQEFIHEDGKIHSRFQ-QTLTSTGRLSSADPNLQNIPI--R 660 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA-DLAGIEARVLAWIAG 394 SEE +R + S+ ++ + D + IE RVLA I+G Sbjct: 661 SEE----------------------GRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISG 698 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +AF N EDI+ +T K +N P ++V+ R K + + Y Sbjct: 699 DKHMQEAFNNHEDIHTSTAMKVYNVPKEEVTSNMRRNAKAVNFGIVY 745 >gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|298241730|ref|ZP_06965537.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963] gi|297554784|gb|EFH88648.1| DNA-directed DNA polymerase [Ktedonobacter racemifer DSM 44963] Length = 531 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 60/219 (27%), Positives = 96/219 (43%), Gaps = 40/219 (18%) Query: 250 GIDLVDMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRG 307 G+ + E TL+ H+ + L + L++ ASS G +L + V +DGRLR Sbjct: 194 GVPVSATDEETLEPYAKEHAAVASLLQWKELHKFASSFGENLLAM------VDTDGRLRT 247 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 GA+ +GR + NL Q I A E +P VR C Sbjct: 248 DYAQIGAA-SGR---IICSKPNL-----------QQIPAEEEEEGQEEP-------VRHC 285 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A G +++ ADL+ IE R+LA ++ + ++ FA G+D++ T F+ + +K Sbjct: 286 FVAPPGYRILKADLSNIELRILAEVSRDQTMLRLFAEGKDLHAETAKLMFHLSPETDTKR 345 Query: 428 Q-------RAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 R I K + L Y GA +A+ G+DL Sbjct: 346 HLYKGVPGRKIAKTINFGLAYGMGA---NGLANRAGVDL 381 >gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] Length = 900 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + + DGR+ T+ A++TGR S QN+ R E S E Sbjct: 617 LKKYIHPDGRIH-TIYNQCATQTGRLSSTEPNLQNISVRDEESRE--------------- 660 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 VR + S G LV +D + IE R+LA +A E + AF + DI+ T Sbjct: 661 ----------VRKAFLPSEGNVLVASDYSQIELRMLAHMADEQGLLDAFRHAVDIHTKTA 710 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 + F P+D+V + R K + + Y Sbjct: 711 SDVFQIPLDQVDAKHRRQAKAVNFGIVY 738 >gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] Length = 937 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +++ AD + IE R++A ++ + IKAF +DI+ T A+ FN ++ Sbjct: 681 IRQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAFTADKDIHRATAAEVFNVSVET 740 Query: 424 VSKEQRAIGKVMELALGY 441 + EQR K + L Y Sbjct: 741 ATDEQRRSAKAINFGLIY 758 >gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B] Length = 862 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 31/157 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KLN+ L + DGR+ + + TGR S QN+P Sbjct: 569 KLNSTYVEGLIHVIDQDGRIHSSFN-QTVTTTGRLSSTEPNLQNIP-------------- 613 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFAN 404 I +G A +R + ++ + L++ AD + IE RVLA +A ++ A+ Sbjct: 614 -------IKYEMGRA---IRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKTAYLE 663 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ T ++ FN P+D+V+KE+R+ K + + Y Sbjct: 664 HIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVY 700 >gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] Length = 901 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 26/148 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +AV+ DGR+ TL + TGR S QN+P R++E Sbjct: 616 LIKAVADDGRIHTTLH-QTITATGRLSSVDPNLQNIPV--RTDE---------------- 656 Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G +L+ AD + IE R++A ++ ++ I+AF +G D + T Sbjct: 657 ------GRRIREAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATA 710 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ F+ +V+ EQRA K M L Y Sbjct: 711 ARVFDVDPTEVTGEQRAKIKAMNYGLAY 738 >gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 928 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] Length = 857 Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 27/148 (18%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357 + DGR+ +RTGR S QN+P R E E+ Sbjct: 577 IGPDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRTELGREL------------------ 617 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R +A G LV AD + IE RVLA IA ++ IKAF + EDI+ T ++ F Sbjct: 618 -------RKFFLAKEGWVLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQVF 670 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA 445 P + V+ R+ K + + Y GA Sbjct: 671 GMPPEMVTPLMRSRAKAVNFGIVYGIGA 698 >gi|58257968|gb|AAW69379.1| DNA polymerase I [Hydrogenobacter hydrogenophilus] Length = 169 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 6/126 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS A GK LV++D + IE R+ + G++ I+AF G D++ T + ++ Sbjct: 11 LRSVFKAREGKILVISDFSQIELRIASEYVGDEKMIRAFKEGRDLHRYTASILLGKREEE 70 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ-QFSQNVKST-----STFEDWEQ 477 VSKE+R + K + L Y AK A G+DL +Q ++ +F++W + Sbjct: 71 VSKEERQLAKAVNFGLIYGISAKGLSEYAKSYGIDLSVDEAQKIRDKFFEYFVSFKNWHE 130 Query: 478 AESHHL 483 L Sbjct: 131 KVKREL 136 >gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 884 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 645 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 704 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 705 VTGEQRRSAKAINFGLIY 722 >gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702] Length = 901 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 ++ L EAV+ DGR+ T GA+ TGR S QN+P R E I RG Sbjct: 613 IDGLIEAVADDGRIHTTFNQRGAA-TGRLSSSDPNLQNIPVRTEAGRRI---------RG 662 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 + + + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 663 ---------------AFRVGTGYATLITADYSQIEMRVMAHLSQDPGLIEAYRAGEDLHN 707 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F+ P++ V+ E R K M L Y Sbjct: 708 YVGSKVFDVPVEHVTPELRRRVKAMSYGLVY 738 >gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] Length = 912 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%) Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSC---------IIASNGKKLVVADLAGIE 385 R QTI A R +I DP L + +R+ ++ S + L+ AD + IE Sbjct: 636 RIHTTFQQTIAATGRLSSI-DP-NLQNIPIRTAEGRRIRQAFVVGSGHESLMTADYSQIE 693 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A ++G+ I+AF +GED++ ++A++ PI+ V E R K M L Y Sbjct: 694 MRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIEDVDPEMRRRIKAMSYGLAY 749 >gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 928 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E] gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E] Length = 965 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 25/172 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K++ AD + IE R++A ++ + AF+ G+DI+ +T A+ F ++ Sbjct: 727 IRQAFIARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSEGKDIHRSTAAEIFGLALEN 786 Query: 424 VSKEQRAIGKVMELALGY--------------QGGAKVFKTMASHCGLDLQQFSQNVKST 469 V+ EQR K + L Y +G A+ + + +Q F N++ Sbjct: 787 VTAEQRRSAKAINFGLIYGMSSFGLSRQLGIARGDAQRYMDLYFQRYPGVQTFMTNIREK 846 Query: 470 STFEDW-EQAESHHLWMQDQYPEFAVKDK----------LIGTACELVKKAW 510 + + + E L++ D A++ K + GTA +++K+A Sbjct: 847 AKSQGYVETLFGRRLYLPDIQSANAMRRKAAERVAINAPMQGTAADIIKRAM 898 >gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi] gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 928 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016] gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016] Length = 913 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A +D + AF + D++ T A+ F P++ Sbjct: 674 IRQAFVAPQGYKLLAADYSQIELRIMAHLAKDDGLLDAFRHDLDVHRATAAEVFGVPLED 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ +QR K + L Y G F +A G++ Sbjct: 734 VNGDQRRSAKAINFGLIY--GMSAF-GLAKQIGVE 765 >gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 928 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644] gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644] Length = 1040 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 65/150 (43%), Gaps = 23/150 (15%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L DGR+R T G + TGR S QN+P R+EE Q QA Sbjct: 748 LDALPNLTHPDGRIRATFN-QGVTATGRLSSSEPNLQNIP--VRTEEG-RQVRQAF---- 799 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +A D R L+ AD + IE RVLA + + ++AF DI+ Sbjct: 800 -------VAGDPARQV--------LLTADYSQIELRVLAHFSRDPALLRAFEEDRDIHAD 844 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AK F +D V+ +QR + K + + Y Sbjct: 845 VAAKIFGVALDSVTSDQRRMAKTVNFGVIY 874 >gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] Length = 932 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR IA N L+ AD + IE R++A ++ E I +F EDI+ +T AK F+ P++ Sbjct: 692 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLE 751 Query: 423 KVSKEQRAIGKVMELALGY 441 +V++EQR+ K + + Y Sbjct: 752 EVTREQRSHAKTVNFGIIY 770 >gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] Length = 896 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + IE R++A ++ + + AF G+D++ T A+ F +D+ Sbjct: 657 IRQAFIAPQGFRIVAADYSQIELRIMAHLSDDPSLLTAFKEGQDVHRATAAEVFEVSLDE 716 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 717 VSGDQRRKAKAINFGLIY 734 >gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1] gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 866 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 32/163 (19%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K++R K + Sbjct: 641 FLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQERYQAKAV 700 Query: 436 ELALGY----QGGAKVFKTMASHC-GL-----------------DLQQFSQNVKSTST-- 471 L Y G +K+ K S GL ++Q S+N K T+ Sbjct: 701 NFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQKVTTMLG 760 Query: 472 ----FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 DWE + + AV ++ G+A EL+K A Sbjct: 761 RERILSDWESSPG----ARAASGRLAVNTRIQGSAAELIKLAM 799 >gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] Length = 949 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G L+ D + IE R+LA +AG D +AFA G+DI+ T ++ FN P+ + Sbjct: 709 IREAFVAEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLSE 768 Query: 424 VSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 769 MTPDIRRQAKAINFGVIY 786 >gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 870 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 689 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTGEQRRSAKAINFGLIY 766 >gi|320449752|ref|YP_004201848.1| DNA polymerase I [Thermus scotoductus SA-01] gi|320149921|gb|ADW21299.1| DNA polymerase I [Thermus scotoductus SA-01] Length = 682 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 37/205 (18%) Query: 250 GIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILK-LNTLSEAVSSDGRLRG 307 G+DL D E TL H + +L + R+++ G K LN + GR+ Sbjct: 364 GLDLPDTREDTLAGYREHPLVAKLLRYREAAKRVSTYGKEWAKHLN------PATGRIHP 417 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + Q GA TGR + Q +PR DP +R Sbjct: 418 SWQQIGAE-TGRMACRKPNLQQVPR----------------------DP------ALRRA 448 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 G+ ++ AD + IE R+ A IA E ++AF G+D++ T + P+++V KE Sbjct: 449 FRPKEGRVMLKADFSQIELRIAAAIAKEGRMLRAFREGKDLHALTASLVLGKPLEEVGKE 508 Query: 428 QRAIGKVMELALGYQGGAKVFKTMA 452 R + K + L Y GA+ + A Sbjct: 509 DRQLAKALNFGLLYGLGAEGLRRYA 533 >gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] Length = 932 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR IA N L+ AD + IE R++A ++ E I +F EDI+ +T AK F+ P++ Sbjct: 692 VRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDIHRSTAAKVFHVPLE 751 Query: 423 KVSKEQRAIGKVMELALGY 441 +V++EQR+ K + + Y Sbjct: 752 EVTREQRSHAKTVNFGIIY 770 >gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] Length = 881 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F + Sbjct: 619 IRRAFIAEDGWQILAADYSQIELRIMAHLSADPGLLAAFARGDDIHRATAAEIFGVAPEA 678 Query: 424 VSKEQRAIGKVMELALGY 441 VS+EQR K + L Y Sbjct: 679 VSREQRRDAKAINFGLIY 696 >gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] Length = 871 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ + DGR+ G + TGR S QN+P + + G I Sbjct: 588 LAVFIGDDGRIHGKFN-QTVTATGRLSSTEPNLQNIPVR-------------MELGRMIR 633 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 DCV V AD + IE RVLA +G++ IKA+ DI+ T + Sbjct: 634 KVFVPKEDCV-----------FVDADYSQIELRVLAHCSGDEQLIKAYREATDIHRMTAS 682 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+TP D+V+ QR K + + Y Sbjct: 683 QVFHTPFDEVTDLQRRNAKAVNFGIVY 709 >gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] Length = 910 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 13/144 (9%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VRS +A G K++ AD + IE R+L++ A + F GEDI+ +T A+ F D+ Sbjct: 667 VRSAFVAPQGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQ 726 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V++E R K + + Y G F G+ Q N ++ + Q Sbjct: 727 VTEEHRRKAKAINFGVIY--GISAF-------GVAKQLNISNTEAAQYINHYFQEYPSIR 777 Query: 484 WMQDQYPEFAVKD----KLIGTAC 503 D+ +FAV++ +IG C Sbjct: 778 QYMDETKKFAVENGYVKNMIGRRC 801 >gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6] Length = 576 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/96 (31%), Positives = 49/96 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A GK LV++D + IE R+ + G++ IKAF G+D++ T + + Sbjct: 339 LRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGKDLHRYTASVLLGKKEED 398 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +SKE+R + K + L Y A+ A G+DL Sbjct: 399 ISKEERQLAKAVNFGLIYGISARGLSDYAKSYGIDL 434 >gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] Length = 955 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 20/148 (13%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L +A +DGR+ T Q AS TGR S QN+P R + I RG I Sbjct: 664 LQKAAVADGRVHTTFQQNAAS-TGRLSSTAPNLQNIPIRTDEGRRI---------RGAFI 713 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 P L D V + L+ AD + IE R++ +A ++ I+A+A+GED++ Sbjct: 714 VAPKIL--DGVEY-------EGLLTADYSQIEMRIMVHLAADEKLIQAYADGEDLHRYVG 764 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F ++V+ + RA K M L Y Sbjct: 765 SEVFGVAPEEVTPQMRAKVKAMSYGLAY 792 >gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] Length = 995 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 80/331 (24%), Positives = 129/331 (38%), Gaps = 53/331 (16%) Query: 161 EYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 EY D + T L+ L P ER L + + G ++D D++ +L Sbjct: 552 EYAAEDADVTMRLWMALKPRLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLS 611 Query: 211 ELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDLVDMSE-----GTLKS 263 AQ +L+E+I L S +Q L + G + L Sbjct: 612 HAFAQRTVRLEEEINGLVGHKFNLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLDD 671 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-----DGRLRGTLQFYGASRTG 318 + ++ I A+ LI L LK +T ++A+ + GR+ + GA+ TG Sbjct: 672 LAANEEIDGDARRLINTMLEWRQMTKLK-STYTDALPAYINAETGRIHTSYAL-GATTTG 729 Query: 319 RWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 R + QN+P R + EI R+ IA G +L+ Sbjct: 730 RLASSDPNLQNIPIRTKEGREI-------------------------RTAFIADKGMQLI 764 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA +A KAFA G DI+ T ++ F P+ + E R K + Sbjct: 765 SADYSQIELRVLAHVADIPQLKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINF 824 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + Y G F +A+ + ++ S +K+ Sbjct: 825 GIIY--GISAF-GLANQLSISREEASDYIKT 852 >gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234] gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234] Length = 1040 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA+ G KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 797 IRTAFIATPGHKLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVEG 856 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 857 MPSEIRRRAKAINFGIIY 874 >gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 772 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 533 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 592 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 593 VTGEQRRSAKAINFGLIY 610 >gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032] gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032] Length = 899 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 30/161 (18%) Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 RL S+ +LK +VS DGR+ T A+ TGR S QN+P R+EE Sbjct: 606 RLKSTVDGLLK------SVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-- 654 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G I R+ ++ + L+ AD + IE R++A ++G++ I+ Sbjct: 655 ---------GRRIR----------RAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIE 695 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF +G D + T + F + +V+ +QR K M L Y Sbjct: 696 AFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNYGLAY 736 >gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] Length = 878 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 66/153 (43%), Gaps = 28/153 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + DG++ + + TGR S QN+P + E EI Sbjct: 594 LKNVIDGDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKHEMGREI-------------- 638 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R + +N + ++ AD + IE R+L+ IA ++ I AF + +DI+ T Sbjct: 639 -----------RKVFVPNNNESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIHTIT 687 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 ++ F PID+V+ R+ K + + Y GA Sbjct: 688 ASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGA 720 >gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] Length = 897 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA +G +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +KAF DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] Length = 871 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ + DGR+ GT + TGR S QN+P R E L R Sbjct: 588 LANYIGPDGRIHGTFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 630 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G + AD + IE R+LA +G+ I+A+ +DI+ T Sbjct: 631 ---------LIRKVFVPQEGYVFIDADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTA 681 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F TP D+V+ QR K + + Y Sbjct: 682 SQVFKTPFDEVTDLQRRNAKAVNFGIVY 709 >gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01] gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01] Length = 960 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF D++ T A+ F P+D+ Sbjct: 721 IRQAFVAPKGYKLMAADYSQIELRIMAHLAKDEGLLDAFRYDLDVHKATAAEVFGVPLDQ 780 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 781 VTSDQRRKAKAINFGLIY 798 >gi|320531283|ref|ZP_08032259.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136486|gb|EFW28458.1| DNA-directed DNA polymerase [Actinomyces sp. oral taxon 171 str. F0337] Length = 912 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 27/164 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +A+ +DGR+ T Q A+ TGR S QN+P R EE + + +A GE Sbjct: 627 LRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARHEEGM-RIREAFTVGE--- 679 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 DC L+ AD + IE R++A ++G+ I+AF +GED++ A Sbjct: 680 -----GYDC------------LMTADYSQIEMRIMAHLSGDQALIEAFRSGEDLHRYVAA 722 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 + V+ +QR+ K M L Y G F +A G+D Sbjct: 723 LVHGIEVGDVTAQQRSHVKAMSYGLAY--GLSTFG-LARQLGID 763 >gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01] gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01] Length = 930 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ Sbjct: 690 IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + F + ED Sbjct: 750 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 806 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 A S +++ + PE A+ + GTA +++KKA Sbjct: 807 RSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 860 >gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37] gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37] Length = 934 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E ++ D GR+ + GA+ TGR + QN+P RSEE Sbjct: 647 DALQEHINPDTGRVHTSYSIAGAN-TGRLASNDPNLQNIPV--RSEE------------- 690 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A G LV D + IE R+LA +A D +AF +G DI+ Sbjct: 691 ---------GRRIREAFVAPEGHTLVSLDYSQIELRILAHMADIDALKQAFRDGLDIHAM 741 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P+D+++ + R K + + Y Sbjct: 742 TASEMFNVPLDEMTPDIRRQAKAINFGVIY 771 >gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48] gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Pseudomonas entomophila L48] Length = 922 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +AS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F + Sbjct: 683 IRQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALAD 742 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y G F +A G+D +Q Sbjct: 743 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 777 >gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 921 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F +D Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELDN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii] gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii] Length = 881 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 11/134 (8%) Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVVADLAG 383 P +R L QT+ A R + DP + + D +R IA G +L+ AD + Sbjct: 599 PETKRLHTSLNQTVAATGRLSS-TDPNLQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQ 657 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 +E R+LA ++ + ++ F GEDI++ T + FN P +V+++ R K + + Y Sbjct: 658 VEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVY-- 715 Query: 444 GAKVFKTMASHCGL 457 G F +AS+ G+ Sbjct: 716 GISPF-GLASNIGV 728 >gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] Length = 908 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 24/143 (16%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 V+ DGR+ T Q + TGR S QN+P + T + + +G Sbjct: 627 VAEDGRIHTTYQ-QNVAATGRLSSKDPNLQNIP-------VRTDAGRRIRQG-------- 670 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 I+ + L+ D + IE R++A ++G++ I+AF +GED++ T A+ FN Sbjct: 671 --------FIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGEDLHTTVAARVFN 722 Query: 419 TPIDKVSKEQRAIGKVMELALGY 441 V EQR K M L Y Sbjct: 723 VEPGSVDAEQRRRIKAMSYGLAY 745 >gi|313665520|ref|YP_004047391.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] gi|312949975|gb|ADR24571.1| DNA-directed DNA polymerase [Mycoplasma leachii PG50] Length = 911 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR I +N K + D + IE RVLA ++ E IKAF DI++ FN ++ Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKESNLIKAFNQNADIHLQAAKLIFNISDNQ 720 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ EQR I KV + Y G F +A+ +++ Q Q +K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLANDLNMNVNQAKQMIK 761 >gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116] gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116] Length = 930 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ Sbjct: 690 IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 VS EQR K + L Y G F +A G+ + F + ED Sbjct: 750 VSSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDT 806 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 A S +++ + PE A+ + GTA +++KKA Sbjct: 807 RSAASEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 860 >gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96] gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96] Length = 930 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GKK+V AD + IE R++A ++ ++ +KAF+ +D++ T A+ F ++ Sbjct: 691 IRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLKAFSEEQDVHRATAAEVFGVAPEQ 750 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A GL Q Sbjct: 751 VTTDLRRSAKAINFGLIY--GMSSF-GLAQQLGLSRSQ 785 >gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14] gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14] Length = 923 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ + I++ Sbjct: 683 IRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDIEE 742 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 743 VSSEQRRRAKAINFGLIY 760 >gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] Length = 910 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 27/150 (18%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351 + L++ ++ DGR+ + Q + TGR S QN+P R E +EI Sbjct: 625 DGLAKVIADDGRIHSSFQ-QTVTATGRLSSTEPNLQNIPIRMELGKEI------------ 671 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 R A G V +D + IE RVLA ++ + I+A+ G+DI+ Sbjct: 672 -------------RRVFPAMEGCVFVDSDYSQIELRVLAHLSQDPKLIEAYRQGKDIHRA 718 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F+TP ++V+ +QR+ K + + Y Sbjct: 719 TASLVFHTPFEEVTDQQRSNAKAVNFGIVY 748 >gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS] gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS] Length = 928 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 74/306 (24%), Positives = 119/306 (38%), Gaps = 58/306 (18%) Query: 160 GEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDL----- 203 G Y D + T +L ++ P + E L + I G +ID Sbjct: 495 GRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHN 554 Query: 204 ---DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 +L L+L EL + + E+ + S++Q L+ LF GI + + G Sbjct: 555 HSEELTLRLAELEKKAHEIAGEEFN------LSSTKQ---LQTILFEKQGIKPLKKTPGG 605 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGAS 315 S S + +LA D L ++ + KL + L ++ R T + Sbjct: 606 APST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVT 664 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R+EE +R IA Sbjct: 665 ATGRLSSTDPNLQNIPV--RNEE----------------------GRRIRQAFIAPEDYV 700 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 701 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAI 760 Query: 436 ELALGY 441 L Y Sbjct: 761 NFGLIY 766 >gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 933 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +LV D + IE RVLA ++ + +KAF +G D++ T A+ F P + Sbjct: 694 IRRGFVAPEGMQLVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAE 753 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 V+ EQR + K + + Y G A+ G ++ + + + S++ Sbjct: 754 VTSEQRRVAKAVNFGVIYGQSAFGLARQLGIPQGRAGKYIKAYFKKIPGVSSY 806 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 59/218 (27%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+C ++ +G V D + IE R+LA + + ++AF EDI+ T F T Sbjct: 644 MRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDIHSRTAISIFGTS--- 700 Query: 424 VSKEQRAIGKVMELALGYQGGA-------------------KVFKTMASHCGLDLQQFSQ 464 KE+RA+ K + L Y GA K FK AS ++ F + Sbjct: 701 -DKEKRAVAKTINFGLIYGMGASKLSNELGISRSDAKDYIEKYFKAFAS-----IKNFME 754 Query: 465 NVKS-------TST------FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW- 510 N+KS T+T + D+ A M Y +V K G+A +++KKA Sbjct: 755 NLKSEAKKNGYTTTLFGRKRYFDFANATPMQFAM---YERESVNTKFQGSAADIIKKAMV 811 Query: 511 --------------RAKHQGVLQLWKDLTEGFACVVQE 534 + + + ++ D++E F +QE Sbjct: 812 EISPFLNENTRLLLQIHDELIFEVRDDMSESFGKKMQE 849 >gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] Length = 948 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A A + I+AF G DI+ T A+ D Sbjct: 700 IRGAFIAPKGRKVLSADYSQIELRLMAHFANDPVLIRAFQEGHDIHRATAAEILGKAFDD 759 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 V+ E+R K + L Y G F +A G QQ +K Sbjct: 760 VTSEERRQAKAVNFGLLY--GMSEFG-LAKQLGFTRQQAQDYIK 800 >gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4] gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4] Length = 930 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ Sbjct: 690 IRQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHTATAAEIMGVSIED 749 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 750 VSSEQRRRAKAVNFGLIY 767 >gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 917 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G KLV AD + IE R++A ++G+ + AFA G+DI+ T A+ F ++ Sbjct: 677 IRQAFIPCAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALEA 736 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R K + L Y Sbjct: 737 VTSDMRRSAKAINFGLIY 754 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S+ L++ AD + +E R++A ++G++ I AF +GEDI+ T AK FN +D Sbjct: 718 IRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLIAAFEHGEDIHAATAAKLFNKTLD 777 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E+R K + Y Sbjct: 778 EVTSEERRRAKTANFGIIY 796 >gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] Length = 895 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 27/152 (17%) Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + TL +A + DGR+ T + A+ TGR S QN+P NR Sbjct: 606 VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP----------------NR- 647 Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 DP G +RS + G + L+ +D + +E R++A ++G++ I+AF +G+D + Sbjct: 648 ----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFH 700 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + + P+D ++ +QR+ K M L Y Sbjct: 701 KYVASLVYGIPVDDITSDQRSHVKAMSYGLAY 732 >gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040] gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040] Length = 935 Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 95/424 (22%), Positives = 177/424 (41%), Gaps = 76/424 (17%) Query: 46 DRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D + MP D L+ L+ D+ ++ + N ++ +F + GID+ A Sbjct: 397 DDLAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDVTPIDDTMLLSYA 455 Query: 101 RTNGLPSSLKNACLALNFSEHL-----TKMEEGKALIARFCKGSI-DSPPYDCTRAN-HV 153 G+ + L+ + +H + + GK+ I F + SI D+ PY A+ + Sbjct: 456 LHGGMHGHGMD-TLSERYLDHQPIPIKSLLGSGKSAIT-FDRVSIEDATPYAAEDADITL 513 Query: 154 QAWQLF-GEYCKRDVEATRELFKR-LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + WQ F + ++ V E +R L+P+ L ++Q G ++D D + ++ Sbjct: 514 RLWQQFKPQLHQKQVTTVYETLERPLVPV------LAQMEQ----HGIKVDRDTLSRMSN 563 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +Q+ L+ +I +L G + L LF D + + G +++ Sbjct: 564 AFSQKMAALEAEIHELA-GETFNVGSPKQLGEILF-----DKMSLPGGKKGKTGAYATGA 617 Query: 272 QLAKDLI--------------LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 + +DL L++L S+ + L+ + E GR+ + GA+ T Sbjct: 618 DILEDLATEHTLPARVLDWRQLSKLKSTYTDALQEHIHPET----GRVHTSYLQTGAN-T 672 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR + QN+P RSEE +R +A G L+ Sbjct: 673 GRLASSDPNLQNIPV--RSEE----------------------GRRIREAFVADEGNVLL 708 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE R+LA +AG D +AFA+G DI+ T ++ F+ P+++++ + R K + Sbjct: 709 SLDYSQIELRILAHVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAINF 768 Query: 438 ALGY 441 + Y Sbjct: 769 GVIY 772 >gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279] gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279] Length = 1273 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A+ G +LVVAD + IE RVLA ++G++ I F G DI+ T A F DK Sbjct: 605 IRKAFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDK 664 Query: 424 VSKEQRAIGKVM 435 V EQR K + Sbjct: 665 VGAEQRRAAKCL 676 >gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens] Length = 939 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 47/83 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A ++ ++ + AF N D++ T A+ F +++ Sbjct: 700 IRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNE 759 Query: 424 VSKEQRAIGKVMELALGYQGGAK 446 V+ +QR K + L Y GA+ Sbjct: 760 VTSDQRRGAKAINFGLIYGMGAQ 782 >gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] Length = 935 Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 47/83 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A ++ ++ + AF N D++ T A+ F +++ Sbjct: 696 IRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNNLDVHTATAAEVFKVELNE 755 Query: 424 VSKEQRAIGKVMELALGYQGGAK 446 V+ +QR K + L Y GA+ Sbjct: 756 VTSDQRRGAKAINFGLIYGMGAQ 778 >gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 923 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I++ Sbjct: 683 IRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILGLDIEQ 742 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 743 VSSEQRRRAKAINFGLIY 760 >gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12] gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12] Length = 859 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 78/325 (24%), Positives = 143/325 (44%), Gaps = 50/325 (15%) Query: 162 YCKRDVEATRELFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 Y D + T +L +L P+ +D E L + + RG ID + + + + Sbjct: 429 YAAEDADITLQLHHKLYPMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKR 488 Query: 213 IAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + + K L+E+ ++L + S +Q L+ LF I ++ + T + + S + Sbjct: 489 LKERIKILEEEAIQLAGKPFNLSSPKQ---LQEILFNEQKIPVIAKTP-TGQPSTAESVL 544 Query: 271 TQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCV 324 +LA D L + + KL + L + ++++ GR+ + + TGR S Sbjct: 545 QELAFDYRLAAVILEHRGLTKLVSTYIDALPKKINAETGRVHTSYN-QAVAATGRLSSSE 603 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P R+EE +R+ IA + ++ AD + I Sbjct: 604 PNLQNIPI--RNEE----------------------GRLIRTAFIAPPEQVILAADYSQI 639 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A ++ ++ + AFANG DI+ T A+ F+ ++V+ EQR K + L Y G Sbjct: 640 ELRIMAHLSQDENLLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIY--G 697 Query: 445 AKVFKTMASHCGLDLQQFSQNVKST 469 F +A G++ +Q +QN T Sbjct: 698 MSAFG-LAKQIGVE-RQDAQNYIDT 720 >gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] Length = 867 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 83/190 (43%), Gaps = 39/190 (20%) Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT-LQF 311 LV L+ +L+H + T+L + ++ L + V+ DGR+ T LQ Sbjct: 553 LVKTQHPFLEHLLAHRDRTKLKQTVV---------------GLQKVVADDGRIHTTYLQT 597 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 A TGR S QN+P + + + QA A D Sbjct: 598 VAA--TGRLSSKDPNLQNIPVRTDAGRRIRSVFQA-------------AQD--------D 634 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R++A ++G++ I+AF +GED++ + F PI+ V+ +QR+ Sbjct: 635 GYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIEDVTDQQRSK 694 Query: 432 GKVMELALGY 441 K M L Y Sbjct: 695 VKAMSYGLVY 704 >gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105] gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105] Length = 927 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA+ G LV AD + IE R++A I+G++ I AF G DI+ T ++ F +++ Sbjct: 688 VREAFIAAPGCVLVSADYSQIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNE 747 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ + R KV+ L Y G F +A + G+ Sbjct: 748 VTSDHRRTAKVINFGLIY--GMSAF-GLAGNLGI 778 >gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34] gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34] Length = 923 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ + I+ Sbjct: 683 IRQAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDIEN 742 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 743 VSSEQRRRAKAINFGLIY 760 >gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684] gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684] Length = 884 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 74/279 (26%), Positives = 120/279 (43%), Gaps = 45/279 (16%) Query: 175 KRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGI 231 + L+PL D E L + + + G R+D +L+ ++ + E L+ +I +LT + + Sbjct: 477 RELLPLFDDVELPLVRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWELTGEEFM 536 Query: 232 IRSSRQTYALRMYLFLITGIDL-------VDMSEGTLKSILS-HSNITQLAKDLILNRLA 283 I S +Q L LF G+ L++I H I ++ + L +LA Sbjct: 537 IGSPQQ---LGQILFEKLGLSRKRRGKTGYSTDARVLQAIRGEHPVIEKIERWRELTKLA 593 Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S+ L+ L +S D RL T A+ TGR S QN+P Sbjct: 594 ST-----YLDALPLLISPEDHRLHTTFNQVTAA-TGRLSSTNPNLQNIP----------- 636 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 I PLG +R+C +A G L+ AD + +E RVLA IAGE+ + F Sbjct: 637 ----------IRTPLGRE---IRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEIF 683 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 GED++ T A +++ R+ K++ + Y Sbjct: 684 RRGEDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVY 722 >gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217] gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217] Length = 936 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A++G +LV D + IE R+LA +A + +AF G DI+ T ++ FN P+D+ Sbjct: 696 IREAFVAASGHRLVSLDYSQIELRILAHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQ 755 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 756 MTPEIRRQAKAINFGVIY 773 >gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] Length = 932 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 74/301 (24%), Positives = 125/301 (41%), Gaps = 59/301 (19%) Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQLF R V T+ +++ L ER L + + G ++D D + ++ AQ Sbjct: 513 WQLFKPQLHR-VGVTK-VYETL------ERPLVPVLAAMERSGVKVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + L++DI +L G + L LF D + + G +++ + + Sbjct: 565 KMAGLEDDIYELA-GRKFNVGSPKQLGEILF-----DEMGLEGGKKGKTGAYATGADVLE 618 Query: 276 DLI--------------LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRW 320 DL L++L S+ + + L + ++ D GR+ + GAS TGR Sbjct: 619 DLATEHDLPARVLDWRQLSKLKSTYT-----DALQDHINPDTGRVHTSYSIAGAS-TGRL 672 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 + QN+P RSEE +R +A GK LV D Sbjct: 673 ASTDPNLQNIPI--RSEE----------------------GRRIREAFVAEPGKALVALD 708 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA IA +AF +G DI+ T ++ F P+D+++ + R K + + Sbjct: 709 YSQIELRILAHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVI 768 Query: 441 Y 441 Y Sbjct: 769 Y 769 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + IE R++A ++ ++ + A GEDI+ A+ F+ +D+ Sbjct: 675 IRQAFIAPKGYCLLAADYSQIELRIMAHLSEDEKLLSALTAGEDIHKAVAAEVFDLAMDE 734 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ EQR K + L Y G + F +A G++ Q Sbjct: 735 VTTEQRRQAKAVNFGLMY--GMQAFG-LAKQLGIERHQ 769 >gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] Length = 887 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 85/363 (23%), Positives = 139/363 (38%), Gaps = 77/363 (21%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI- 251 ++ G +DLD + ++ + LDE LT IIR + + + +R L + Sbjct: 499 SMEQAGIGVDLDAFAGFLDDVSTQ---LDE----LTRSIIRHAGEPFNIRSSQQLAAILF 551 Query: 252 DLVDMSEGT-------------LKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSE 297 D +D+ EG L++I S H + + + +L +L S+ L L + Sbjct: 552 DKLDIKEGNKTATGQRSTANQVLEAIRSRHPIVEDILEYRMLEKLRST-----YLEPLPK 606 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V D RL A+ TGR S QN+P + Sbjct: 607 LVGEDSRLHTHFNQL-ATATGRLSSSQPNLQNIPIR------------------------ 641 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 G +R+C IA G L AD + IE RVLA +G+ I AF N EDI+ T A Sbjct: 642 GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAALLT 701 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + V ++R K + L Y G A+ + ++++ + + + Sbjct: 702 DKQPQDVLADERRNAKTINFGLIYGMGPQKLARELDITVNQAKEFIERYFDKLATLKAYY 761 Query: 474 DW--EQAESH-------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 D + AESH + + Q AV + G+A +++K A A Sbjct: 762 DTIVKDAESHGFVTTLAGRRRLLPELHSRNTQLVSQARRQAVNTVIQGSAADIIKMAMVA 821 Query: 513 KHQ 515 H+ Sbjct: 822 AHK 824 >gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583] gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583] Length = 880 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ ++ DGR+ T + TGR S QN+P R+E L R Sbjct: 597 LANYIAEDGRIHSTFN-QTITATGRISSTEPNLQNIPV--RTE---------LGR----- 639 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I +G + AD + IE RVLA ++G++ I+A+ +DI+ T + Sbjct: 640 --------LLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITAS 691 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ P D+V+ QR K + + Y Sbjct: 692 QVFHIPFDEVTPLQRRNAKAVNFGIVY 718 >gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] Length = 876 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + D ++ + + TGR S QN+P + E +EI I Sbjct: 592 LKAVIQEDDKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGKEI-----------RKI 639 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 P DCV ++ AD + IE RVLA IA ++ I AF N DI+ T Sbjct: 640 FVPEN--EDCV-----------ILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTA 686 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PID+V+ QR+ K + + Y G Sbjct: 687 SEVFKVPIDEVTSAQRSNAKAVNFGIVYGIG 717 >gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] Length = 948 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 27/152 (17%) Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + TL +A + DGR+ T + A+ TGR S QN+P NR Sbjct: 659 VQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIP----------------NR- 700 Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 DP G +RS + G + L+ +D + +E R++A ++G++ I+AF +G+D + Sbjct: 701 ----DPAGRE---IRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKDFH 753 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + + P+D ++ +QR+ K M L Y Sbjct: 754 KYVASLVYGIPVDDITSDQRSHVKAMSYGLAY 785 >gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 880 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ ++ DGR+ T + TGR S QN+P R+E L R Sbjct: 597 LANYIAEDGRIHSTFN-QTITATGRISSTEPNLQNIPV--RTE---------LGR----- 639 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I +G + AD + IE RVLA ++G++ I+A+ +DI+ T + Sbjct: 640 --------LLRKVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITAS 691 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ P D+V+ QR K + + Y Sbjct: 692 QVFHIPFDEVTPLQRRNAKAVNFGIVY 718 >gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3] gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3] Length = 916 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F+ + Sbjct: 676 IRHAFIAPEGRKILAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFDVDFSE 735 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 736 VTSDQRRRAKAVNFGLIY 753 >gi|29566063|ref|NP_817633.1| gp44 [Mycobacterium phage Bxz2] gi|29424788|gb|AAN01798.1| gp44 [Mycobacterium phage Bxz2] Length = 604 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 7/105 (6%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR C +A G+ + D E RVLA ++G+ I+AF +G D+++ T A+ P + Sbjct: 375 VRRCFLADEGQLMASVDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAW--PDRE 432 Query: 424 VSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 ++K+ +R K + Y GGA KT+A GLD++ Q V Sbjct: 433 ITKDSPERKYAKTVNFGRVYGGGA---KTVAEQTGLDMEAAKQVV 474 >gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder] Length = 604 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 103/451 (22%), Positives = 176/451 (39%), Gaps = 72/451 (15%) Query: 41 PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSV 98 PV+L R E+ A Q LR+ V HN+ ++ + ++TLGI + + T + Sbjct: 71 PVELGPRYEEEAR-----QALRN-VKGFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKI 124 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANH 152 LA P K + E + E K L+A + + + T+ Sbjct: 125 LAHLVD-PRPFKEGGIGHKLEELVKHYIDAPVAENVKTLMATLAREYKTTKAHIWTKVEW 183 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLD 204 + + Y D L ++LIPL E L + + RG+ +D++ Sbjct: 184 TNPY--YQLYAGMDPILAARLLQKLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVE 241 Query: 205 LVLKLQE--LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 KL E L Q+ DI+ + + + AL + G+ + + +EG Sbjct: 242 YSEKLSEDMLRKQDYWASKADILYGLENVNSPIQVAEAL-----MRRGVKITERTEGGQP 296 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + ++L+RL G + L+EA+S A + G+W Sbjct: 297 KV----------DKVLLDRLIKEG------DPLAEAISE------------AKKWGKWEK 328 Query: 323 CVFQPQNLPRQERSE-EILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLV 377 + R + +QA +I A L VR C +A G+ + Sbjct: 329 TWVRKFLDSRDSKDRCHASINPLQARTARMSITGIPAQTLPSGDWLVRRCFLADEGELMA 388 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVM 435 D E RVLA ++G+ I+AF +G D+++ T A+ P +++K+ +R K + Sbjct: 389 SVDYQAQELRVLAALSGDRTMIQAFRDGADLHLMTARAAW--PDREITKDSPERKYAKTV 446 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y GGA KT+A GLD++ Q V Sbjct: 447 NFGRVYGGGA---KTVAEQTGLDMEAAKQVV 474 >gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN] Length = 870 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 24/165 (14%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R LA ++ + AF +GEDI+ T ++ F+ P+++VSKEQR K + Sbjct: 648 ADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFG 707 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQ------- 486 + Y G AKV K +Q + + F E+ Q + L + Sbjct: 708 IVYGQQAFGLAKVLKISVGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRER 767 Query: 487 -----DQYP-------EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +++P FAV ++ G+A EL+K A Q + Q Sbjct: 768 IIDSWNEFPGSRAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQ 812 >gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] Length = 927 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I G + AD + IE RV+A ++ + + AF G DI+ T AK +N P+ + Sbjct: 688 IRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLDAFREGYDIHAATAAKIYNKPVSE 747 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V++++R K + Y G VF Sbjct: 748 VTRDERTKAKRANFGIIY--GITVF 770 >gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] Length = 899 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 33/179 (18%) Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +LA+ L RL A+ KL + L + V DGR+ T GA+ TGR S Sbjct: 585 LEKLAEQHELPRLVLEHRALAKLKGTYVDALPQLVDPRDGRIHTTFHQAGAA-TGRLSSS 643 Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R E S I R+ +A G +L+ AD + Sbjct: 644 DPNLQNIPVRTELSRRI-------------------------RAAFVAPPGWRLLSADYS 678 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R+LA + + ++AF ED++ T A+ F +V+ + R I KV+ + Y Sbjct: 679 QIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSDMRRIAKVLNFGIAY 737 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 1/83 (1%) Query: 360 ASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 A +R I + L++ AD + IE RVLA I+G+ IKAF NGEDI+ T A+ F Sbjct: 636 AGRLIRKVFIPGRPENLLLTADYSQIELRVLAHISGDPALIKAFKNGEDIHTRTAAEIFA 695 Query: 419 TPIDKVSKEQRAIGKVMELALGY 441 ++V++E R K + + Y Sbjct: 696 VRPEEVTREMRTRAKAVNFGIVY 718 >gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga] gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva] Length = 1786 Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 3/128 (2%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R C +A G K V+AD + IE R+ A IA + I+A+ D++ T + N I+ V Sbjct: 1553 RECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQAYQQKVDLHSLTASILKNKNINDV 1612 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS--TSTFEDWEQAESHH 482 +KE+R + K + L + + M + G +L+ K TS F +++ + H Sbjct: 1613 NKEERQLAKAVNFGLIFGMSINGLR-MYAETGYNLKLTQNEAKEIYTSFFNNFKGILNWH 1671 Query: 483 LWMQDQYP 490 +++ P Sbjct: 1672 NSVKNSRP 1679 >gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626] gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626] Length = 903 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 39/242 (16%) Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDLVDMSE------GT 260 +A++ K+L DI + I ++ +T+ L LF + G+ + + T Sbjct: 526 LAEQSKELGADIASRVERIHEAAGETFNLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYST 585 Query: 261 LKSILSH-SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 +LS ++ Q+ D++ R + + L+ L + D R+ T A+ TGR Sbjct: 586 NAKVLSDLADTYQIVADVLEYRERAKIKSTY-LDALPALIRGDHRIHTTFNQTVAA-TGR 643 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P RSE LG VR+ +G + Sbjct: 644 LSSSDPNLQNIPT--RSE-------------------LG---HRVRTAFTVPSGHVFLAC 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R+LA ++G++ I AF +G D + T ++ F P+++V+ E R+ K + + Sbjct: 680 DYSQIELRLLAHLSGDEHLIAAFQSGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGI 739 Query: 440 GY 441 Y Sbjct: 740 VY 741 >gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec] gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec] Length = 911 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I+AFA+GED++ A+AF P+ Sbjct: 670 IRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFVAAQAFGLPVS 729 Query: 423 KVSKEQRAIGKVMELALGY 441 +V E R K M L Y Sbjct: 730 EVDPELRRRIKAMSYGLAY 748 >gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00] gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia intracellularis PHE/MN1-00] Length = 868 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/187 (24%), Positives = 77/187 (41%), Gaps = 29/187 (15%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + DGR+ T A+ TGR S QN+P + Sbjct: 578 LEPLPRLIGKDGRVHTTFNQL-ATATGRLSSSNPNLQNIPIR------------------ 618 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 G +RSC AS G L+ AD + +E RVLA + + + AF G DI+ Sbjct: 619 ------GSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHTR 672 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVK 467 T + + ++V+ ++R K + L Y G A+ T + +Q++ ++++ Sbjct: 673 TASLLYEKSQEEVTADERRNAKTINFGLIYGMGPQKLAQELNTTLNEAKKFIQRYFEHLQ 732 Query: 468 STSTFED 474 + F D Sbjct: 733 AIKKFYD 739 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 26/150 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + + GA R+GR+S QN+PR T++ + Sbjct: 326 GRIHPSYRQCGA-RSGRFSCKQPNLQNVPR--------NCTVKGM--------------- 361 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 R+C IA G +++ AD + IE R++A I+G+ + A+ GED++ T + ++ Sbjct: 362 --RACFIAPPGYQIIKADYSQIELRIVAEISGDAKMLDAYVKGEDLHTLTASLITGKLLE 419 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +V+ E R I K + L Y GA + A Sbjct: 420 EVTTEDRRIAKSVNFGLIYGMGAAKLQAYA 449 >gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 61/258 (23%), Positives = 106/258 (41%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V S+ R+ + G + TGR S QN+P Sbjct: 219 LNKLKTT-----YVDTLPNLVDSNSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 265 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R +A GK L+ D + +E RVL ++ ++ Sbjct: 266 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 308 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 IKA+ +D++ T + FN + D V++EQR I K++ ++ Y G AK K Sbjct: 309 IKAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVK 368 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + +TFE E E H + ++ Q Sbjct: 369 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERM 428 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 429 AVNTVIQGTAAEVLKKVM 446 >gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48] gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48] Length = 953 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A G KL+ AD + IE R+LA I KAF +G DI+ T ++ F P++ Sbjct: 710 IRTAFVARAGHKLISADYSQIELRLLAHIGDIGQLKKAFQDGIDIHALTASEMFGVPVEG 769 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F + + G+D Q+ + +K+ Sbjct: 770 MPSEVRRRAKAINFGIIY--GISAFG-LGNQLGIDNQEAGRYIKT 811 >gi|256384245|gb|ACU78815.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|256385078|gb|ACU79647.1| DNA polymerase I superfamily [Mycoplasma mycoides subsp. capri str. GM12] gi|296455971|gb|ADH22206.1| DNA polymerase I superfamily [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 911 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR I +N K + D + IE RVLA ++ E I AF DI++ FN D+ Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ EQR I KV + Y G F +AS + + Q Q +K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNISVNQAKQMIK 761 >gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 874 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 121/308 (39%), Gaps = 72/308 (23%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 ++ L + ++ DGR+ T + TGR S QN+P R E I Sbjct: 580 VDALGQLIARDGRIHTTFA-QTVAETGRLSSKDPNLQNIPIRIEEGRRI----------- 627 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R +A G L+ AD + IE RV+A +G+ +AF + +DI+ Sbjct: 628 --------------RKAFVARPGCVLLSADYSQIELRVVAHFSGDPALREAFLHDQDIHT 673 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 T A+ F P+D+V+ E R K + L Y G A+ + ++ + Sbjct: 674 RTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYGQTDFGLARSVGISRAEARAFIETYFAKF 733 Query: 467 KSTSTFEDWEQAES--------------------HHLWMQDQYPE-FAVKDKLIGTACEL 505 + + ++AE+ H ++ Q E A+ + GTA +L Sbjct: 734 AGVRRYMEEKKAEAREKGYVTTLDGRRRPLPEINHRVFTIRQNAERMAINTPIQGTAADL 793 Query: 506 VKKAWRA-----KHQG-----VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 +K+A A + +G +LQ+ +L F C V E V + RLV R + Sbjct: 794 MKRAMIAVRRAMREEGLSARMILQVHDELV--FECPVGE--------VDRLARLVRREME 843 Query: 556 RDVHIVLP 563 + + +P Sbjct: 844 GAMKLDVP 851 >gi|331703661|ref|YP_004400348.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802216|emb|CBW54370.1| DNA polymerase I [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 911 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR I +N K + D + IE RVLA ++ E I AF DI++ FN D+ Sbjct: 661 VRKIFITNNNKTFLSYDYSQIELRVLAQMSKETNLINAFNQNADIHLQAAKLIFNLSDDQ 720 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ EQR I KV + Y G F +AS + + Q Q +K Sbjct: 721 ITSEQRRIAKVFNFGILY--GLTDF-GLASDLNISVNQAKQMIK 761 >gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627] gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627] Length = 928 Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPQDHVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|226377780|ref|YP_002790829.1| DNA polymerase [Lactobacillus phage Lb338-1] gi|225921558|gb|ACO37071.1| DNA polymerase [Lactobacillus phage Lb338-1] Length = 1046 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/196 (26%), Positives = 81/196 (41%), Gaps = 26/196 (13%) Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 LAK I+N+++SS + ++L E +L G G + T R S QNLP Sbjct: 678 LAKFSIVNKISSSFT-----DSLREYTDDTMKLHGHFSAVG-TETSRLSSSQINLQNLP- 730 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 E+S L + R P G KL+ D + +E +LA + Sbjct: 731 AEKSNTHLFNYKYPIKRMFVSRFPNG----------------KLINLDYSSLEFHILALV 774 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 ED AF G+DI+ + A ++ P + V EQR K + L Y G +A Sbjct: 775 TKEDSMTGAFLEGKDIHTSNAALMYDVPYEDVIVEQRKAAKSIGFGLIYGKGDAA---LA 831 Query: 453 SHCGLDLQQFSQNVKS 468 GL L++ + + + Sbjct: 832 EDLGLSLEEAQEKINT 847 >gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] Length = 925 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L +A++SDGR+ T A+ TGR S QN+P R+EE Sbjct: 637 LDGLIKAIASDGRIHTTFN-QTATATGRLSSTDPNLQNIPV--RTEE------------- 680 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R+ + G + L+ AD + IE RV+A + + I+A+ +GED++ Sbjct: 681 ---------GRQIRAAFVPGEGYEALLTADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHN 731 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+++V+ E R K + L Y Sbjct: 732 FVGSQVFDVPVNEVTPELRRRVKALSYGLVY 762 >gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521] gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521] gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 26/148 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + DGR+ + TGR S QN+P R E EI + L G+T Sbjct: 672 LKNVIDEDGRIHSNFN-QTVTTTGRLSSTDPNLQNIPIRHELGREI-RKVFIPLQEGDT- 728 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 LV D + IE RVLA IAG++ I AF + DI+ T Sbjct: 729 ----------------------LVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHTKTA 766 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F P++ V+ R+ K + + Y Sbjct: 767 SEVFKVPVEDVTSLMRSRAKAVNFGIVY 794 >gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] Length = 937 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G L+ D + IE R+LA +AG D +AFA G+DI+ T ++ FN P+++ Sbjct: 697 IREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEE 756 Query: 424 VSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 757 MTSDIRRQAKAINFGVIY 774 >gi|227496059|ref|ZP_03926368.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834387|gb|EEH66770.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 899 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +AV +DGR+ T Q A+ TGR S QN+P R+EE + Sbjct: 614 LRKAVLADGRIHTTFQQTVAA-TGRLSSTDPNLQNIP--ARTEEGMR------------- 657 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R G++ L+ AD + IE R++A ++G+ I AF +GED++ Sbjct: 658 ---------IREAFTVGQGQECLLTADYSQIEMRIMAHLSGDQALIDAFRSGEDLHRYVA 708 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 A + V+ EQR+ K M L Y G + +A G+D Sbjct: 709 AMVHGIDVADVTAEQRSHVKAMSYGLAY--GLSTYG-LARQLGID 750 >gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] Length = 937 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G L+ D + IE R+LA +AG D +AFA G+DI+ T ++ FN P+++ Sbjct: 697 IREAFVPEEGNVLLALDYSQIELRILAHVAGIDTLKQAFAEGQDIHALTASEMFNVPLEE 756 Query: 424 VSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 757 MTSDIRRQAKAINFGVIY 774 >gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] Length = 976 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 733 IRTAFIAEPGNKLVSADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 792 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 793 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 834 >gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601] gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601] Length = 921 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G+ + D + IE R++A I+G++ ++AF G D++ T A+ F + + Sbjct: 682 VREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALGQ 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR KV+ L Y Sbjct: 742 VTSEQRRYAKVINFGLIY 759 >gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304] gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304] Length = 976 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 31/184 (16%) Query: 292 LNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + TL ++V +SDGR+ T + A+ TGR S QN+P NR Sbjct: 687 VQTLMDSVNTSDGRIHTTFEQTVAA-TGRLSSTDPNLQNIP----------------NRN 729 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 + +R+ + S+G L+ +D + +E R++A ++G++ I+AF +G D + Sbjct: 730 --------VEGREIRAAFVPSDGYLSLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFH 781 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKS 468 + + P+D+++ +QR+ K M L Y G + +A G+ Q Q K Sbjct: 782 KYVASLVYQVPLDQITPDQRSHIKAMSYGLAY--GLSTYG-LAQQLGISPAQSDQLKAKY 838 Query: 469 TSTF 472 STF Sbjct: 839 FSTF 842 >gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 462 Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G+KL+ D + IE R++A ++G+ + AF +G D++ A+ F ID+ Sbjct: 221 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 280 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +R K + L Y Sbjct: 281 VTPNERRAAKAINFGLIY 298 >gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] Length = 926 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A+ G KLV AD + IE R++A ++ + + AF+ G+DI+ T A+ F ++ Sbjct: 687 VRQAFVAAPGCKLVAADYSQIELRIMAHLSEDPSLLAAFSAGQDIHRATAAEVFGVENEE 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 V+ +QR K + L Y G F +A G++ +Q ++ ++ Sbjct: 747 VTIDQRRSAKAINFGLIY--GMSAFG-LARQLGINRKQAAEYIE 787 >gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a] gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a] Length = 924 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 31/171 (18%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 + L E V+ D GR+ + GA+ TGR S QN+P R E I Sbjct: 638 DKLPEMVNPDTGRVHTSYHQSGAA-TGRLSSSDPNLQNIPIRTEDGRRI----------- 685 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R +A G +L+ AD + IE R++A ++ + ++AF G D++ Sbjct: 686 --------------RRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHR 731 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 T A+ F +++V+ +R K + L Y G F +A + G+D Q Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMY--GMSAFG-LARNLGIDRGQ 779 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 7/124 (5%) Query: 325 FQPQNLPRQERSEEILTQTIQALNRG-------ETIADPLGLASDCVRSCIIASNGKKLV 377 +P PR QT+ A R + I L L ++ + G+ L+ Sbjct: 596 LKPLVNPRTGSLHTSFNQTVTATGRLSSSEPNLQNIPVRLELGRRLRKAFVPHGPGRLLL 655 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+LA I+G++ I AF GEDI+ T A+ F P+ +V+ R K + Sbjct: 656 AADYSQIELRILAHISGDEAMIAAFRRGEDIHARTAAEVFGVPLGEVTPAMRRSAKAVNF 715 Query: 438 ALGY 441 + Y Sbjct: 716 GIVY 719 >gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289] gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289] Length = 920 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I +G AD + IE R++A ++G++ ++AF G DI+ T AK ++ IDK Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIWHEDIDK 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 741 VTDAQRKKAKQANFGIIY 758 >gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1] gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1] Length = 923 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G+KL+ D + IE R++A ++G+ + AF +G D++ A+ F ID+ Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +R K + L Y Sbjct: 742 VTPNERRAAKAINFGLIY 759 >gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC] gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC] Length = 921 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G+ + D + IE R++A I+G++ ++AF G D++ T A+ F + + Sbjct: 682 VREAFVAPPGRVIASCDYSQIELRIMAHISGDEALLRAFHEGLDVHRATAAEVFGVALGQ 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR KV+ L Y Sbjct: 742 VTSEQRRYAKVINFGLIY 759 >gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000] gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000] Length = 946 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 39/211 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++ ++ ++AF G+D++ T A+ F + Sbjct: 699 IREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLE 758 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG-------LDLQQFSQNVKSTSTFEDWE 476 V+ EQR KV+ L Y G F +AS+ G L + ++ + + D Sbjct: 759 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGIGRDAAKLYIDRYFARYPGVARYMDET 815 Query: 477 QAESHH-----------LWMQD---------QYPE-FAVKDKLIGTACELVKKAWRAKHQ 515 + +H LW+ D Q E A+ + GTA +L+K + A Sbjct: 816 RLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADLIKLSMLA--- 872 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANV 546 +Q W D G + G + R+V V Sbjct: 873 --VQDWLD---GSPSAGKPGAPMRTRQVMQV 898 >gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] Length = 920 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I +G AD + IE R++A ++G++ ++AF G DI+ T AK ++ IDK Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIWHEDIDK 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 741 VTDAQRKKAKQANFGIIY 758 >gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] Length = 1042 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +AS+G + L+ +D + +E R++A ++G++ I+AF +G D + + + PID Sbjct: 801 IRGAFVASDGFESLLSSDYSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPID 860 Query: 423 KVSKEQRAIGKVMELALGY 441 ++S +QR+ K M L Y Sbjct: 861 QISSDQRSHIKAMSYGLAY 879 >gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107] gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107] Length = 937 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 25/170 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R++A ++ + + AF G D++ T A+ F +D Sbjct: 698 IRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGLLSAFEKGLDVHRATAAEVFGVALDS 757 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLD---------------LQQFSQNVK 467 V+ E R K + L Y G F H G + +Q++ N++ Sbjct: 758 VTPEMRRSAKAINFGLIY--GMSAFGLAKQLHVGRNEAQQYIDRYFERYPGVQRYMNNIR 815 Query: 468 STSTFEDWEQAESHHLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG 516 + + EQ L+ + Y P+ K+K A E + A A QG Sbjct: 816 AQA----HEQGYVETLFGRRLYLPDINAKNKNFQLAAE--RTAINAPMQG 859 >gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15] Length = 959 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 39/211 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++ ++ ++AF G+D++ T A+ F + Sbjct: 712 IREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFREGQDVHRATAAEVFGVTPLE 771 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG-------LDLQQFSQNVKSTSTFEDWE 476 V+ EQR KV+ L Y G F +AS+ G L + ++ + + D Sbjct: 772 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGIGRDAAKLYIDRYFARYPGVARYMDET 828 Query: 477 QAESHH-----------LWMQD---------QYPE-FAVKDKLIGTACELVKKAWRAKHQ 515 + +H LW+ D Q E A+ + GTA +L+K + A Sbjct: 829 RLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPMQGTAADLIKLSMLA--- 885 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANV 546 +Q W D G + G + R+V V Sbjct: 886 --VQDWLD---GSPSTGKPGAPMRTRQVMQV 911 >gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134] gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134] Length = 955 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 67/256 (26%), Positives = 108/256 (42%), Gaps = 33/256 (12%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITG 250 T+ G R+D + + KL + +A+E L+E I K+ I S +Q L LF Sbjct: 559 TVETNGVRLDSESLAKLSKELAKEVVVLEEKIYKIAGEQFNIASPKQ---LGEILFGKLQ 615 Query: 251 IDLVDMSEGTLKSILSHSNITQLA--KDLILNRLASSGSAILK---LNTLSEAVSSDGRL 305 +D + + + +LA +++ + L G LK ++ L E V+ L Sbjct: 616 LDPKAKKTKSGQYATGEEILVKLADKNEIVQHILDFRGLQKLKNTYVDALPELVNKKTGL 675 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +T Q + R Sbjct: 676 IHTSYNQAVAATGRLSSTNPNLQNIP---------IRTAQG--------------REVRR 712 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 + I S+ L+ AD + IE R++A + + IKAF NGEDI+ TT +K + P+D+V Sbjct: 713 AFIPRSDEFVLLAADYSQIELRIMAEFSQDATMIKAFQNGEDIHATTASKIYKVPLDQVD 772 Query: 426 KEQRAIGKVMELALGY 441 + R K + Y Sbjct: 773 SDMRRKAKTANFGIIY 788 >gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + LV AD + +E RVLA ++ + I+AF +GEDI+ T ++ FN ++ Sbjct: 641 IRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFNSGEDIHRKTASQVFNVDFNQ 700 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 701 VTPELRSAAKAVNFGIIY 718 >gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1] gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1] Length = 978 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA+ G KL+ AD + IE RVLA +A KAFA G DI+ T ++ F P++ Sbjct: 734 IRTAFIAAPGYKLISADYSQIELRVLAHVADIPELKKAFAEGMDIHAMTASEMFGVPVEG 793 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 794 MPGEVRRRAKAINFGIIY 811 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F PI+ Sbjct: 755 IRTAFISTPGHKLISADYSQIELRVLAHVANIPQLEQAFADGVDIHAMTASEMFGVPIEG 814 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 815 MPSEVRRRAKAINFGIIY 832 >gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029] gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138] gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029] gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138] Length = 870 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 24/165 (14%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R LA ++ + AF +GEDI+ T ++ F+ P+++VSKEQR K + Sbjct: 648 ADYSQIELRFLAHLSQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFG 707 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQ------- 486 + Y G AKV K +Q + + F E+ Q + L + Sbjct: 708 IVYGQQAFGLAKVLKISIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRER 767 Query: 487 -----DQYP-------EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 +++P FAV ++ G+A EL+K A Q + Q Sbjct: 768 IIDSWNEFPGSRAASGRFAVNTRIQGSAAELIKLAMLDISQAIKQ 812 >gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23] gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23] gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 923 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G+KL+ D + IE R++A ++G+ + AF +G D++ A+ F ID+ Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +R K + L Y Sbjct: 742 VTPNERRAAKAINFGLIY 759 >gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3] gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3] Length = 932 Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ I+ Sbjct: 692 IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVNIED 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 V+ EQR K + L Y G F +A G+ + F + ED Sbjct: 752 VTSEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDT 808 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 A S +++ Y PE A+ + GTA +++KKA Sbjct: 809 RSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 862 >gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] Length = 940 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 28/158 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + G + TGR S QN+P R+ E Sbjct: 664 GRIHTSFNQAGTT-TGRLSSSDPNLQNIP--ARTHE----------------------GK 698 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA G LV AD + IE R++A IA + IKAF G DI+ T A+ I+ Sbjct: 699 LIRKAFIAPQGYTLVSADYSQIELRLIAHIAKDPNLIKAFKLGYDIHKATAAEVLGKDIN 758 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +V+ E+R+ K L Y GA +++ GL + Sbjct: 759 EVTGEERSRAKATNFGLMYGMGA---HGLSAQTGLSFK 793 >gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] Length = 867 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 28/177 (15%) Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 LS N QLA D++ R S ++ LS + DGR+ G + TGR S Sbjct: 557 LSEEN--QLASDILEYRTYSKLNSTYAEGLLS-WIREDGRIHGHFN-QMVTATGRISSTD 612 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P I T+ + R I G + AD + + Sbjct: 613 PNLQNIP-------IRTEMGRRFRR-----------------VFIPKEGSIFIDADYSQV 648 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 E R+LA ++G++ I+A+ N +DI+ T ++ F+ P+ +V+ + R K + + Y Sbjct: 649 ELRILAALSGDEKLIRAYQNADDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVY 705 >gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4] gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4] Length = 992 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P+D Sbjct: 747 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDG 806 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 807 MPSEVRRRAKAINFGIIY 824 >gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12] gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 923 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G+KL+ D + IE R++A ++G+ + AF +G D++ A+ F ID+ Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +R K + L Y Sbjct: 742 VTPNERRAAKAINFGLIY 759 >gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14] Length = 928 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F+ P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFSLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] Length = 870 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 27/150 (18%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351 + L+ + +DGR+ G + TGR S QN+P R E L R Sbjct: 585 DGLANYICADGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR-- 629 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R I G V AD + IE R+LA +G+ I A+ +DI+ Sbjct: 630 -----------LIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRI 678 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+TP D+V++ QR K + + Y Sbjct: 679 TASQVFHTPFDEVTELQRRNAKAVNFGIVY 708 >gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32] gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32] Length = 933 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ I+ Sbjct: 693 IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIES 752 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 V+ EQR K + L Y G F +A G+ + F + ED Sbjct: 753 VTTEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDT 809 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 A S +++ Y PE A+ + GTA +++KKA Sbjct: 810 RSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 863 >gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 870 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 64/148 (43%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ + +DGR+ G + TGR S QN+P R E L R Sbjct: 587 LANYICADGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 629 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R I G V AD + IE R+LA +G+ I A+ +DI+ T Sbjct: 630 ---------LIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITA 680 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+TP D+V++ QR K + + Y Sbjct: 681 SQVFHTPFDEVTELQRRNAKAVNFGIVY 708 >gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] Length = 899 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 41/207 (19%) Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSD-GRLRGTLQFY 312 +E L + H+++ +L D G A LK + L + ++ D GR+ Q Sbjct: 580 NEDVLAQLAVHADLPRLILDY-------RGMAKLKNTYADALPQMINPDTGRVHTHFQ-Q 631 Query: 313 GASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P R E+ I R +A Sbjct: 632 AVAATGRLSSNDPNLQNIPVRTEQGRRI-------------------------RQAFVAE 666 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G L+ AD + IE R+LA ++G+ ++AFA GEDI+ T A+ F+ + V R Sbjct: 667 EGHWLLSADYSQIELRILAHLSGDARLLQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRA 726 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLD 458 K + L Y + +A G+D Sbjct: 727 AKAINFGLIY---GQTPYGLAQQLGID 750 >gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] Length = 931 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 132/314 (42%), Gaps = 60/314 (19%) Query: 144 PYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 PY A+ ++ WQLF R ++ T+ +++ L ER L + + G ++D Sbjct: 499 PYAAEDADITLRLWQLFKPQLHR-IQVTK-VYETL------ERPLVPVLAAMERSGIKVD 550 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 D + ++ AQ+ L+++I +L G + L LF D + + G Sbjct: 551 RDTLSRMSNAFAQKMAGLEDEIYELA-GRKFNVGSPKQLGEILF-----DEMGLEGGKKG 604 Query: 263 SILSHSNITQLAKDLI--------------LNRLASSGSAILKLNTLSEAVSSD-GRLRG 307 +++ + +DL L++L S+ + + L + ++ D GR+ Sbjct: 605 KTGAYATGADVLEDLATEHDLPGRILDWRQLSKLKSTYT-----DALQDHINKDTGRVHT 659 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + GAS TGR + QN+P RSEE +R Sbjct: 660 SYSIAGAS-TGRLASTDPNLQNIPI--RSEE----------------------GRRIREA 694 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +A GK LV D + IE R+LA IA +AF +G DI+ T ++ F P+D+++ + Sbjct: 695 FVAEEGKVLVALDYSQIELRILAHIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPD 754 Query: 428 QRAIGKVMELALGY 441 R K + + Y Sbjct: 755 IRRQAKAINFGVIY 768 >gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T] Length = 605 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 426 VTSEQRRSAKAINFGLIY 443 >gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13] Length = 851 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 63/256 (24%) Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342 + KLN+ L + V+ DGR+ + +RTGR S QN+P R E +E+ Sbjct: 556 LTKLNSTYVAGLLKTVAPDGRIHTCFK-QTETRTGRISSTEPNMQNIPVRTELGKEM--- 611 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R +A G+ L+ AD + IE R+LA + + +AF Sbjct: 612 ----------------------RKFFVAPRGRILLDADYSQIELRILANLCEDANMQQAF 649 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 +G DI+ +T A+ F P + V+ + R+ K + + Y GA +++ G+ +++ Sbjct: 650 LSGADIHASTAAQVFGVPREAVTPQMRSAAKAVNFGIIYGIGA---YSLSQDIGVSVREA 706 Query: 463 SQNVKS------------TSTFEDWEQA----------------ESHHLWMQDQYPEFAV 494 + +K T ED E+ +SH+ Q A+ Sbjct: 707 DRYIKRYLENFPRVEQFMTRIVEDAERTGFVSTLFGRRREVPELKSHNKIQQAAGRRIAM 766 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++K A Sbjct: 767 NTPIQGTAADIIKIAM 782 >gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62] gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62] Length = 932 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 25/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + GA+ TGR + QN+P RSEE Sbjct: 656 GRVHTSYSIAGAN-TGRLASTDPNLQNIPI--RSEE----------------------GR 690 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA GK LV D + IE R+LA +A +AFA+G DI+ T ++ F+ P+D Sbjct: 691 RIREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQAFADGMDIHAMTASEMFDVPLD 750 Query: 423 KVSKEQRAIGKVMELALGY 441 +++ + R K + + Y Sbjct: 751 QMTSDIRRQAKAINFGVIY 769 >gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath] gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath] Length = 906 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 4/102 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A ++G+ + AFA D++ T A+ F +++ Sbjct: 667 IRQAFVAPPGHKLLAADYSQIELRIMAHLSGDANLLAAFAEDADVHRATAAEVFGVALEE 726 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 V+ QR K + L Y G F +A G+ Q+ +Q Sbjct: 727 VTSSQRRSAKAINFGLIY--GMSAFG-LAKQLGIQ-QKLAQG 764 >gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222] gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222] Length = 933 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ I+ Sbjct: 693 IRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDIES 752 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ--------FSQNVKSTSTFEDW 475 V+ EQR K + L Y G F +A G+ + F + ED Sbjct: 753 VTTEQRRRAKAVNFGLIY--GMSAF-GLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDT 809 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKA 509 A S +++ Y PE A+ + GTA +++KKA Sbjct: 810 RSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKA 863 >gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 931 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 44/261 (16%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLV 254 RG RI+ + +E +L +++ + G IRSS+Q L LF G+ Sbjct: 543 RGIRINRAEFSGFLAEVQKELDRLTQEVYAVAGGQFNIRSSQQ---LGELLFGTLGLKAG 599 Query: 255 DMSEG----TLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 ++G T +++L H I + + L +L S+ L L + R+ Sbjct: 600 SKTKGGQASTSQAVLEKLAGKHPVIDTILEYRKLEKLRST-----YLEPLPRLAQENDRI 654 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T A+ TGR S QN+P + P+G +R Sbjct: 655 HTTFNQL-ATATGRLSSSQPNLQNIP---------------------VRGPMG---QRMR 689 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 C A+ G KLV AD + IE RVLA ++ + I++F EDI+ T ++ V+ Sbjct: 690 RCFTAAPGNKLVAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTAGLLYDVTAADVT 749 Query: 426 KEQRAIGKVMELALGYQGGAK 446 +QR K + L Y G + Sbjct: 750 PDQRRNAKTINFGLIYGMGPQ 770 >gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Manganese gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc Only gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And Manganese gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate And Europium (Iii) Ion gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Short Dna Fragment Carrying 2'-0- Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3' gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Tetramer Carrying 2'-O-(3-Aminopropyl)- Rna Modification 5'-D(Tt)-Ap(U)-D(T)-3' gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431] gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G] gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180] gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357] gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74] Length = 605 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 426 VTSEQRRSAKAINFGLIY 443 >gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74] Length = 605 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 426 VTSEQRRSAKAINFGLIY 443 >gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084] gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084] Length = 922 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 9/166 (5%) Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 TL + DGR+R L + ++ + + P ++ R R L QT+ A R + Sbjct: 608 TLEDLAQQDGRVRMILDYRERAKI-KSTYLDALPADIRRDGRIHTTLNQTVAATGRLSSS 666 Query: 354 ADPL------GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 A L VR+ G + D + IE R+LA ++ + + AF +G D Sbjct: 667 APNLQNIPTRSELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGAD 726 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + T A+ F P+++V+ + R+ K + + Y G + F +S Sbjct: 727 FHAATAARVFGVPVEEVTPQLRSRAKAVNFGIVY--GQQAFGLASS 770 >gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna Polymerase I Complexed With Deoxynucleoside Triphosphate And Pyrophosphate Length = 605 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 426 VTSEQRRSAKAINFGLIY 443 >gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v] Length = 605 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 426 VTSEQRRSAKAINFGLIY 443 >gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] Length = 984 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 108/433 (24%), Positives = 161/433 (37%), Gaps = 74/433 (17%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRW 93 EPV L + P L L D +V +A N+ ++ ++ + + +G D + Sbjct: 446 EPVNLPPFDSDACAP--LRAMLEDPSVTKIAQNAKYDLLVLRSSGVRVAGVGFDTMLASY 503 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + R++GL L L + + T + +GK + D P D R Sbjct: 504 VLDPG-RRSHGL-DLLALEQLGHTMTAYDTLVGKGKTQL------PFDVAPVDTAR---- 551 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-----------RGYRID 202 +Y DV+ T L +L P+ E L L Q I G ID Sbjct: 552 -------DYSCEDVDITMRLRAKLEPML-AEHALLSLFQEIEVPLVSVLAEMEWEGIAID 603 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 LD L+ A ER ++++ I G + LR LF G+ V T Sbjct: 604 LDWFASLKARFAAERGRVEQAIYA-EAGEEFNINSNPKLRAILFEKLGLP-VKKKTATGP 661 Query: 263 SILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASR 316 S S + +LA++ +L L I KL + L V R T S Sbjct: 662 ST-DASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDALPRLVHPRDRRLHTSYSQTVSA 720 Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R+E +I R + G + Sbjct: 721 TGRLSSHDPNLQNIPIRRELGRDI-------------------------RRGFVPREGWR 755 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE RVLA ++ + + AF G DI+ T A F P++ V+ E RA K + Sbjct: 756 LLSADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAKTI 815 Query: 436 ELALGYQGGAKVF 448 A Y GA Sbjct: 816 NFATIYGQGAHAL 828 >gi|289807535|ref|ZP_06538164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 145 Score = 53.9 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 7 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 66 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 67 VTGEQRRSAKAINFGLIY 84 >gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6] gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6] Length = 936 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 68/307 (22%), Positives = 131/307 (42%), Gaps = 46/307 (14%) Query: 144 PYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 PY A+ ++ WQLF + E +++ L ER L + + G ++D Sbjct: 504 PYAAEDADITLRLWQLFKPQLHQ--EQVTTVYETL------ERPLVPVLAQMERHGIKVD 555 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 +++ ++ AQ+ L+ +I ++ D + S +Q + L ++L +G Sbjct: 556 REVLSRMSNAFAQKMAGLESEIHEMAGADFNVGSPKQ-----LGEILFDKLELPGGKKGK 610 Query: 261 LKSILSHSNITQ-LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGA 314 + + ++I + LA + L L + KL + L + ++++ R T Sbjct: 611 TGAYATGADILEDLATEHALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTG 670 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR + QN+P R+EE +R +A G Sbjct: 671 ASTGRMASTDPNLQNIPV--RTEE----------------------GRRIREAFVAGEGN 706 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ D + IE R+LA +AG D +AFA G+DI+ T ++ F+ P+ +++ + R K Sbjct: 707 VLLSLDYSQIELRILAHMAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKA 766 Query: 435 MELALGY 441 + + Y Sbjct: 767 INFGVIY 773 >gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKL+ AD + IE R+LA IA +AF G DI+ T + F P+D+ Sbjct: 242 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQ 301 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ ++ S +K Sbjct: 302 MTGDLRRRAKTINFGIIY--GISAFG-LADRLGIGREEASAFIK 342 >gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 426 VTSEQRRSAKAINFGLIY 443 >gi|297517722|ref|ZP_06936108.1| DNA polymerase I [Escherichia coli OP50] Length = 263 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 24 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 83 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 84 VTSEQRRSAKAINFGLIY 101 >gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 366 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 425 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 426 VTSEQRRSAKAINFGLIY 443 >gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] Length = 896 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 +++L V +D R+ T A+ TGR + QN+P + Sbjct: 608 VDSLIATVGADERIHTTFSQVAAA-TGRLASSDPNLQNIPARS----------------- 649 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 P G+ +R G L+ AD + IE R++A ++G++ I+AF +GED++ Sbjct: 650 ----PDGM---RIRGAFTPGPGYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHR 702 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F TP+++VS E+R+ K L Y Sbjct: 703 TMASMVFGTPVEQVSGEERSRIKATSYGLAY 733 >gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018] gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018] Length = 896 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 28/147 (19%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 S D R+ + G + TGR S QN+P + S TIQ Sbjct: 623 SDDNRIHTSFLHTGTA-TGRLSSKNPNLQNIPTKSDS------TIQ-------------- 661 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I +G KLV D + IE R+LA + + ++AF N DI+ T K F Sbjct: 662 ----IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDLDIHYQTAVKIFG- 716 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAK 446 ++ +KE+R I K + L Y G+K Sbjct: 717 --EENAKEKRGIAKSINFGLLYGMGSK 741 >gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2] gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2] Length = 978 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 911 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 61/281 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ + G + TGR S QN+P Sbjct: 616 LNKLKTT-----YVDTLPLLVDENSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 662 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R IA GK L+ D + +E RVL ++ ++ Sbjct: 663 --VKTDDGIK---------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENL 705 Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN P + VS+EQR I K++ ++ Y G AK K Sbjct: 706 IEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 765 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + +TFE E E H + ++ Q Sbjct: 766 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 825 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 AV + GTA E++KK V + KD E A ++Q Sbjct: 826 AVNTVIQGTAAEVLKKVMVK----VYDILKD-KEDIALLLQ 861 >gi|847765|gb|AAC44593.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 242 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 5/104 (4%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G +L+ AD + IE R++A ++ + I+AF GED++ ++AF+ PID Sbjct: 1 IRDAFVVGEGYAELMTADYSQIEMRIMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPID 60 Query: 423 KVSKEQRAIGKVMELALGY----QGGAKVFKTMASHCGLDLQQF 462 +V+ E R K M L Y G A+ K + ++Q+ Sbjct: 61 EVTPELRRRVKAMSYGLAYGLSAYGVAQQLKISTEEAKVQMEQY 104 >gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] Length = 901 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 64/267 (23%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 LK +L H + T+L + + L ++V+ DGR+ T Q A+ TGR Sbjct: 597 LKFLLDHRDSTRLRQ---------------TVEGLLKSVADDGRIHTTFQQTIAA-TGRL 640 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R E I R+ ++ + L+ A Sbjct: 641 SSTEPNLQNIPIRTEAGRRIR------------------------RAFVVGDGYETLLTA 676 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF GED++ ++ F V+ R+ K M L Sbjct: 677 DYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAVTPAMRSKIKAMSYGL 736 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF-AVKDKL 498 Y S GL Q + +VK S M+D + F V+ L Sbjct: 737 AYG---------LSSFGLS-NQLNIDVKEASKL------------MEDYFTRFGGVRTYL 774 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLT 525 G E + A G + DLT Sbjct: 775 AGVVDEARANGYTATIMGRRRYLPDLT 801 >gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] Length = 985 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 742 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 801 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 802 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 843 >gi|213419973|ref|ZP_03353039.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 138 Score = 53.9 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D Sbjct: 5 IRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLDS 64 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 65 VTGEQRRSAKAINFGLIY 82 >gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] Length = 885 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 69/159 (43%), Gaps = 30/159 (18%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 ++ L + +DGRL + + TGR S QN+P R E I Sbjct: 598 IDALPKLRGADGRLHTSFN-ETVTTTGRLSSSNPNLQNIPVRTEFGRHI----------- 645 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 R C I + + L V AD + IE R+LA ++G+ I AF +G D + Sbjct: 646 --------------RECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFH 691 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 T A+ F P+++V+ E R+ K + + Y G + F Sbjct: 692 SATAARVFGVPVEEVTPELRSRAKAVNFGIVY--GQQAF 728 >gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1] gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1] Length = 978 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354] gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda] gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VRS +A G K++ AD + IE R+L++ A + F GEDI+ +T A+ F D+ Sbjct: 646 VRSAFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQ 705 Query: 424 VSKEQRAIGKVMELALGY 441 V++E R K + + Y Sbjct: 706 VTEENRRKAKAINFGIIY 723 >gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445] gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445] Length = 978 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89] gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1] gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88] gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89] gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1] gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli S88] gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034] gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146] gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3] gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301] gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301] Length = 964 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 124/310 (40%), Gaps = 58/310 (18%) Query: 162 YCKRDVEATRELFKRLIPL-----SDGERDLWLLDQT----------INDRGYRIDLDLV 206 YC DV + +RLIPL ++ +LL+ + DRG RID + Sbjct: 519 YCGSDVH----VVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYL 574 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDL-----VDMSEG 259 +L E + E +L+ L S +Q L LF G+++ Sbjct: 575 AELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSEL---LFEKLGLNVKKSRKTKTGYS 631 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T ++L DLIL + ++ L V++DGR+ + TGR Sbjct: 632 TDAAVLEKLQGDHPIIDLILEHCTLAKLKSTYVDALPSLVAADGRIHTDFN-QAVTATGR 690 Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 S QN+P R E S +I R + G L Sbjct: 691 LSSSNPNLQNIPIRTEFSRQI-------------------------RKAFLPREGWLLAA 725 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA ++ E ++A+ G+D++ T + F+ ++++ E+R IGK++ Sbjct: 726 ADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR--EEITSEERRIGKIINFG 783 Query: 439 LGYQGGAKVF 448 + Y GA+ F Sbjct: 784 VIYGMGAQRF 793 >gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327] Length = 884 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 645 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 704 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 705 VTSEQRRSAKAINFGLIY 722 >gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299] gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206] gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3] gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82] gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942] gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942] Length = 953 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 124/310 (40%), Gaps = 58/310 (18%) Query: 162 YCKRDVEATRELFKRLIPL-----SDGERDLWLLDQT----------INDRGYRIDLDLV 206 YC DV + +RLIPL ++ +LL+ + DRG RID + Sbjct: 508 YCGSDVH----VVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEMEDRGIRIDEGYL 563 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDL-----VDMSEG 259 +L E + E +L+ L S +Q L LF G+++ Sbjct: 564 AELSEHLKGELDRLEGAAHTLAGDRFNLGSPKQLSEL---LFEKLGLNVKKSRKTKTGYS 620 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T ++L DLIL + ++ L V++DGR+ + TGR Sbjct: 621 TDAAVLEKLQGDHPIIDLILEHRTLAKLKSTYVDALPSLVAADGRIHTDFN-QAVTATGR 679 Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 S QN+P R E S +I R + G L Sbjct: 680 LSSSNPNLQNIPIRTEFSRQI-------------------------RKAFLPREGWLLAA 714 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA ++ E ++A+ G+D++ T + F+ ++++ E+R IGK++ Sbjct: 715 ADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFDR--EEITSEERRIGKIINFG 772 Query: 439 LGYQGGAKVF 448 + Y GA+ F Sbjct: 773 VIYGMGAQRF 782 >gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701] gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701] Length = 997 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 50/85 (58%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G +L+ AD + IE R+L ++GE+ ++A+ANG+D++ T + D+ Sbjct: 742 IRKAFLPQEGWQLISADYSQIELRILTHLSGEEVLVEAYANGDDVHALTARLLLDK--DE 799 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V+ ++R +GK + + Y GA+ F Sbjct: 800 VTADERRLGKTINFGVIYGMGAQRF 824 >gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a] gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli ED1a] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301] gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str. 301] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227] gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308] gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19] gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel [Brucella melitensis biovar Abortus 2308] gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19] gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] Length = 978 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012] gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012] Length = 928 Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101] Length = 916 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 677 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 736 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 737 VTSEQRRSAKAINFGLIY 754 >gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W] gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W] gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W] gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101] gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185] gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39] gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI39] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] Length = 936 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + ++ D GR+ + GAS TGR + QN+P RSEE Sbjct: 649 DALQDHINKDTGRVHTSYAQTGAS-TGRMASTDPNLQNIPV--RSEE------------- 692 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A G L+ D + IE R+LA +AG + +AFA G+DI+ Sbjct: 693 ---------GRRIREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAFAEGQDIHAL 743 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F P+++++ E R K + + Y Sbjct: 744 TASEMFGVPLEEMTPEIRRQAKAINFGVIY 773 >gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605] gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86] gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686] Length = 995 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 752 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 811 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 812 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 853 >gi|282598651|ref|YP_003358748.1| gp45 [Mycobacterium phage Peaches] gi|255928178|gb|ACU41796.1| gp45 [Mycobacterium phage Peaches] Length = 608 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%) Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 A L +R C +A G ++ D E RVLA ++ + I+AF + D+++ T Sbjct: 365 AQTLPAGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDADLHLMTA 424 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF I K E R KV+ Y GGA KT+A GLD+ Sbjct: 425 RAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGA---KTVAEQTGLDM 466 >gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197] gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617] gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197] gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330] gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365] gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40] gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330] gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365] gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40] Length = 979 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 736 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 795 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 796 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 837 >gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536] gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11] gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536] gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11] gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2] gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523] Length = 897 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA NG +V AD + IE R++A ++ + +KAF DI+ T A+ ID+ Sbjct: 657 IREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFNQSLDIHSATAAEVLGIGIDE 716 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR K + L Y Sbjct: 717 VSSEQRRKAKAINFGLIY 734 >gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143] gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972] gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972] gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972] gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75] gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5' exonuclease [Escherichia coli O127:H6 str. E2348/69] gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401] gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease [Shigella flexneri 2002017] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933] gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933] gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli] gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli] gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli] gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli] gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli] gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407] gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212] gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89] gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520] gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044] gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046] gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K-12 substr. W3110] gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A] gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638] gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A] gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22] gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019] gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171] gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1] gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11] gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1] gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989] gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952] gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606] gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9] gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B] gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088] gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736] gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli] gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli] gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046] gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K12 substr. W3110] gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A] gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638] gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A] gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22] gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019] gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171] gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1] gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11] gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli 55989] gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI1] gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952] gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Escherichia coli BL21(DE3)] gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606] gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)] gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1] gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088] gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1] gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112] gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010] gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68] gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1] gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482] gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489] gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007] gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3] gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088] gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088] Length = 908 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA +V AD + IE R++A ++G+ + AF G D++ T A+ F +D Sbjct: 668 AIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGLLTAFNEGLDVHAATAAEVFGVALD 727 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ +QR K + L Y Sbjct: 728 EVTSDQRRSAKAINFGLIY 746 >gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83] Length = 928 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36] gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36] Length = 932 Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + ++ D GR+ + GAS TGR + QN+P RSEE Sbjct: 645 DALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPI--RSEE------------- 688 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK LV D + IE R+LA IA +AF +G DI+ Sbjct: 689 ---------GRRIREAFVAEPGKALVALDYSQIELRILAHIANIPELKQAFQDGIDIHAL 739 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F P+D+++ + R K + + Y Sbjct: 740 TASEMFGVPLDEMTSDVRRQAKAINFGVIY 769 >gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687] Length = 928 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B] Length = 928 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905] Length = 884 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 645 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 704 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 705 VTSEQRRSAKAINFGLIY 722 >gi|221506528|gb|EEE32145.1| DNA polymerase I, putative [Toxoplasma gondii VEG] Length = 704 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%) Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310 L D S+GTL + ++Q L + AI ++ L E ++S G++ +L Sbjct: 387 LKDTSDGTL------ARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLH 440 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 GA +GR+S Q +PR+ R V S +A Sbjct: 441 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSKTVA 476 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 K ++AD + IE R+ A +A ++ I+A+ GED++ T + N P +SK R Sbjct: 477 GRPGKFIIADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQ 536 Query: 431 IGKVMELALGYQGGAKVFKTMAS 453 + K + L Y A F+ AS Sbjct: 537 LAKAVNFGLIYGMSADRFRGYAS 559 >gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469] gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia fergusonii ATCC 35469] Length = 928 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5] gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5] Length = 928 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253] Length = 928 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|302858559|gb|ADL71305.1| gp45 [Mycobacterium phage Eagle] Length = 608 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 4/106 (3%) Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 A L +R C +A G ++ D E RVLA ++ + I+AF + D+++ T Sbjct: 365 AQTLPAGDSTIRRCFLADEGHRIASVDYQAQELRVLAALSKDQRMIQAFLDDADLHLMTA 424 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 AF I K E R KV+ Y GGA KT+A GLD+ Sbjct: 425 RAAFGEHIQKDDPE-RKYAKVVNFGRVYGGGA---KTVAEQTGLDM 466 >gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026] gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 911 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 67/281 (23%), Positives = 114/281 (40%), Gaps = 61/281 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ + G + TGR S QN+P Sbjct: 616 LNKLKTT-----YVDTLPLLVDENSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 662 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R IA GK L+ D + +E RVL ++ ++ Sbjct: 663 --VKTDDGIK---------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENL 705 Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN P + VS+EQR I K++ ++ Y G AK K Sbjct: 706 IEAYREEKDLHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 765 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + +TFE E E H + ++ Q Sbjct: 766 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 825 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 AV + GTA E++KK V + KD E A ++Q Sbjct: 826 AVNTVIQGTAAEVLKKVMVK----VYDILKD-KEDIALLLQ 861 >gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227] Length = 928 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] Length = 928 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28] gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G LV D + IE R+LA IA D +AF +G+DI+ T ++ F+ P+D+ Sbjct: 698 IREAFVAEPGNVLVSLDYSQIELRILAHIADIDALRQAFRDGQDIHAMTASEMFDVPLDE 757 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 758 MTPEIRRQAKAINFGVIY 775 >gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1] gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1] Length = 938 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR+ IA G L+ D + IE R++A +A ++ + AF G+DI+ T A + P++ Sbjct: 695 VRNAFIADEGWVLLSVDYSQIELRIVAHVANDEAMLAAFRAGQDIHAATAAAIYGVPLEA 754 Query: 424 VSKEQRAIGKVMELALGY 441 V++E R K + L Y Sbjct: 755 VTREMRRHAKAINFGLIY 772 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 29/164 (17%) Query: 282 LASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSE 337 L G A LK NT ++ + S D R ++ A + TGR S QN+P Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDATHRVHTSYHQALTATGRLSSTDPNLQNIP------ 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 I P+G +R IA G+ L+ AD + IE R++A + +D Sbjct: 676 ---------------IRTPIG---RQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDA 717 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + AF G+D++ T A+ I+ V+ +QR K + L Y Sbjct: 718 LVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLY 761 >gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13] gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653] gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] Length = 994 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852 >gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington] gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi] gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 872 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G KL+ AD + IE R+L+ IA D +AF N EDI+ T + FN + Sbjct: 635 IRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQIFNLQKHE 694 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 695 LTSEHRRKAKAINFGIIY 712 >gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 921 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVELEG 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+++ R K + L Y G F +A G+D +Q Sbjct: 742 VTQDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] Length = 876 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + + DG++ T+ A++TGR S QN+ R E+ +EI Sbjct: 593 LKKYIQQDGKIH-TIYNQSATQTGRLSSSEPNLQNISVRDEQGKEI-------------- 637 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R + NG L+ +D IE R+LA +A E I+AF G DI+ T Sbjct: 638 -----------RKAFLPENGCVLISSDYHQIELRMLAHMANETSLIEAFKEGIDIHTKTA 686 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 F+ P D+++ + R K + + Y Sbjct: 687 MDVFHKPQDEITAQDRRSAKTVNFGIVY 714 >gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] Length = 899 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L ++VS DGR+ T A+ TGR S QN+P R+EE G Sbjct: 611 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-----------GR 656 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I R+ ++ + L+ AD + IE R++A ++ +D I+AF +G D + Sbjct: 657 RIR----------RAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAA 706 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F + V+ +QR K M L Y Sbjct: 707 TASSVFTVEVGDVTADQRRKIKAMNYGLAY 736 >gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1] gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 874 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L +AV+ +GR+ T + AS TGR S QN+P R+E Sbjct: 588 IEGLIKAVADNGRIHTTFKQTVAS-TGRLSSTDPNLQNIPV--RTE-------------- 630 Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +RS G + L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 631 --------AGRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDLHN 682 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ PID+V+ E R K M L Y Sbjct: 683 FVGSRVFDVPIDQVTPELRRRVKAMSYGLVY 713 >gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 321 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 82 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 141 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 142 VTTDMRRSAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 176 >gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1] gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024] Length = 881 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840] gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] Length = 863 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 42/82 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA+ KL+ D + IE R+LA I+ + KAFA DI+ T A+ F P+ Sbjct: 629 VRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVFGVPLKD 688 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ E R K + + Y GA Sbjct: 689 VTAEHRRSAKAVNFGIAYGQGA 710 >gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7] Length = 877 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 44/79 (55%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + V AD + IE RVLA +AG++ I+A+ +DI+ T ++ F+TP D Sbjct: 637 LIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVFHTPFD 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ QR+ K + + Y Sbjct: 697 EVTPAQRSNAKAVNFGIVY 715 >gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513] gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 994 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852 >gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1] gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1] Length = 994 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852 >gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33] gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915] gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99] gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99] gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915] gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99] Length = 978 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] Length = 897 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + +G KLV AD + IE RVLA I ++ I AF N EDI+ +T +K F P + Sbjct: 657 IRKAFVPCDGNYKLVDADYSQIELRVLAHITDDENMIGAFNNNEDIHTSTASKVFGVPNE 716 Query: 423 KVSKEQRAIGKVMELALGYQGG 444 +V+ R+ K + + Y G Sbjct: 717 EVTSALRSKAKAVNFGIVYGIG 738 >gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13] gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13] Length = 994 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852 >gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 913 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 628 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRRG---- 675 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 676 ------------FVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVAS 723 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F +V E R K M L Y Sbjct: 724 QVFGVATSEVDAEMRRKIKAMSYGLAY 750 >gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] Length = 893 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 27/152 (17%) Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++TL + V+ GR+ + G + TGR S QNLP +SEE Sbjct: 608 IDTLPKLVNPKTGRIHASFHQTGTA-TGRLSSSDPNLQNLPT--KSEE------------ 652 Query: 351 ETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I+ + +V AD + IE R+LA ++G++ +KAF G D++ Sbjct: 653 ----------GKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVKAFEEGIDVH 702 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ +N ++V++E R +GK++ ++ Y Sbjct: 703 TLTASRIYNVKPEEVNEEMRRVGKMVNFSIIY 734 >gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120] Length = 810 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 571 IRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 630 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 631 VTSEQRRSAKAINFGLIY 648 >gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33] gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33] gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] Length = 994 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852 >gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5] gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5] Length = 871 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ + +DGR+ G + TGR S QN+P R E L R Sbjct: 588 LAVYIGADGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 630 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G + AD + IE R+LA +G++ I+A+ + DI+ T Sbjct: 631 ---------LIRKVFVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYKDARDIHRMTA 681 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+TP ++V++ QR K + + Y Sbjct: 682 SQVFHTPFEEVTELQRRNAKAVNFGIVY 709 >gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94] gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1] gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94] gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1] Length = 994 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852 >gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] Length = 836 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 365 RSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R C++ G V AD + IE RVLA ++GE+ I+AF G D++ T + + Sbjct: 600 RRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVHARTASWIYGVDPQA 659 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 VS EQR KV+ L Y GA Sbjct: 660 VSPEQRRFAKVVNFGLLYGMGA 681 >gi|221486831|gb|EEE25077.1| DNA polymerase I, putative [Toxoplasma gondii GT1] Length = 704 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%) Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310 L D S+GTL + ++Q L + AI ++ L E ++S G++ +L Sbjct: 387 LKDTSDGTL------ARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLH 440 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 GA +GR+S Q +PR+ R V S +A Sbjct: 441 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSKTVA 476 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 K ++AD + IE R+ A +A ++ I+A+ GED++ T + N P +SK R Sbjct: 477 GRPGKFIIADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQ 536 Query: 431 IGKVMELALGYQGGAKVFKTMAS 453 + K + L Y A F+ AS Sbjct: 537 LAKAVNFGLIYGMSADRFRGYAS 559 >gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] Length = 920 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I G AD + IE RV+A ++ + I+AF +G DI+ T AK + PI++ Sbjct: 681 IRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIEAFMHGYDIHAATAAKIYKKPIEE 740 Query: 424 VSKEQRAIGKVMELALGY 441 V++++R K + Y Sbjct: 741 VTRDERNKAKRANFGIIY 758 >gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 751 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 99/470 (21%), Positives = 192/470 (40%), Gaps = 78/470 (16%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 +S + + L +YL D TV V HN+ F+ +L + + + + + + N + Sbjct: 184 RSYVLNGLKRYLTDPTVGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMKILNENEPSVA 243 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD-----CTRANHVQAWQLFGEYC 163 LKN LA + + E F K P D + H+ W+L+ ++ Sbjct: 244 LKN--LATRYGKFFGFDGESHTFEDLFGKACFADVPLDMALIYAAKDTHL-TWELY-KWQ 299 Query: 164 KRDVEATRELFKRLIPLSDGERDLWL-LDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + +L K L + D+ + ++QT G+ +D + E + E ++++ Sbjct: 300 MEHLTKREDLLKLYRELENPLVDICVEMEQT----GFAVDTAFAQEYGEELKGELAEVEK 355 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--------TLKSILS-HSNITQL 273 +V I +S A +Y D + + +G TLK + H I L Sbjct: 356 TLVAHFGEINFNSPAQLAEVLY-------DRLGLPQGKERSTDVKTLKGLKGRHPGIEPL 408 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 K L +L + + L + +DGR+ G+ A+ TGR++ QNLP + Sbjct: 409 LKYRELTKLLGT-----YVEALPHQLKADGRIHGSFNQV-ATVTGRFASREPNLQNLPPR 462 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 R I+A G L+ D + IE R+LA ++ Sbjct: 463 ------------------------------ARRLIVAPKGWLLLGIDFSQIEPRILAHMS 492 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTM 451 G+ + + GED+Y T A+ F P+ + + R + K+ LA+ Y G +F T+ Sbjct: 493 GDPHFREPYLKGEDLYSTLAARVFKVPLSECGDGSKYRKMMKIGLLAVMY--GTSMF-TL 549 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + G+ +++ + ++ +++ + +++D + EF K++ + T Sbjct: 550 SEQLGISVEEAHRFIEGF-----YDEYPDVYAFIKDTW-EFVKKNEYVAT 593 >gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A +A + + AFA G+DI+ T A+ F ++K Sbjct: 688 IRQAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAFAAGKDIHRATAAEVFGMSLEK 747 Query: 424 VSKEQRAIGKVMELALGY 441 V+++QR K + L Y Sbjct: 748 VTQDQRRSAKAINFGLIY 765 >gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] Length = 850 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 41/79 (51%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F ID Sbjct: 610 LIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQTAAEVFGVDID 669 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688 >gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 905 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 620 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRRG---- 667 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 668 ------------FVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVAS 715 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F +V E R K M L Y Sbjct: 716 QVFGVATSEVDAEMRRKIKAMSYGLAY 742 >gi|289549017|ref|YP_003474005.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] gi|289182634|gb|ADC89878.1| DNA-directed DNA polymerase [Thermocrinis albus DSM 14484] Length = 575 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 22/167 (13%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A G V+AD + IE R+ A GE I+AF G D++ T + + Sbjct: 339 LRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIRAFQEGRDLHRYTASILLGKREED 398 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ-QFSQNVKST-----STFEDWE- 476 ++KE+R + K + L Y AK A+ G+DL + +Q ++ F DW Sbjct: 399 ITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDLPVEEAQAIRERFFSYFEGFRDWHN 458 Query: 477 ----------QAESHHL----WMQDQYPEFAVKDKLIGTACELVKKA 509 ++ H L ++ +P+ AV + GT +L+K A Sbjct: 459 RVKEELKKTGKSSGHTLLGRSYVAHTFPD-AVNYPIQGTGADLLKLA 504 >gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5] gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5] Length = 909 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L ++VS DGR+ T A+ TGR S QN+P R+EE G Sbjct: 621 VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPI--RTEE-----------GR 666 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I R+ ++ + L+ AD + IE R++A ++ +D I+AF +G D + Sbjct: 667 RIR----------RAFVVGEGYECLLTADYSQIEMRIMAHLSSDDALIEAFNSGHDFHAA 716 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F + V+ +QR K M L Y Sbjct: 717 TASSVFTVEVGDVTADQRRKIKAMNYGLAY 746 >gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 920 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 32/159 (20%) Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342 + KLN+ L+ + DGR+ G + TGR S QN+P R E EI Sbjct: 626 LTKLNSTYAEGLAAYIGEDGRIHGKFN-QTITATGRISSTEPNLQNIPVRMELGREI--- 681 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R + G V AD + IE R+LA ++G++ I+A+ Sbjct: 682 ----------------------RKVFVPKEGCVFVDADYSQIELRILAHMSGDERLIEAY 719 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +DI+ T ++ F+ P+ +V+ QR K + + Y Sbjct: 720 RSAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNFGIVY 758 >gi|237832033|ref|XP_002365314.1| DNA polymerase I, putative [Toxoplasma gondii ME49] gi|211962978|gb|EEA98173.1| DNA polymerase I, putative [Toxoplasma gondii ME49] Length = 704 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%) Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310 L D S+GTL + ++Q L + AI ++ L E ++S G++ +L Sbjct: 387 LKDTSDGTL------ARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLH 440 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 GA +GR+S Q +PR+ R V S +A Sbjct: 441 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSKTVA 476 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 K ++AD + IE R+ A +A ++ I+A+ GED++ T + N P +SK R Sbjct: 477 GRPGKFIIADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQ 536 Query: 431 IGKVMELALGYQGGAKVFKTMAS 453 + K + L Y A F+ AS Sbjct: 537 LAKAVNFGLIYGMSADRFRGYAS 559 >gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] Length = 872 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ + DGR+ G + TGR S QN+P R E L R Sbjct: 589 LAGYIKDDGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 631 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R I +G V AD + IE R+LA +G++ I A+ DI+ T Sbjct: 632 ---------LIRKVFIPEDGYVFVDADYSQIELRILAHCSGDEQLINAYKEARDIHRITA 682 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+TP ++V+ QR K + + Y Sbjct: 683 SQVFHTPFEEVTDLQRRNAKAVNFGIVY 710 >gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 884 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 67/147 (45%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 599 LIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRRG---- 646 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 647 ------------FVVGEGFESLMTADYSQIELRVMAHLSQDEGLIRAFTSGEDLHNTVAS 694 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F +V E R K M L Y Sbjct: 695 QVFGVATSEVDAEMRRKIKAMSYGLAY 721 >gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1] gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1] Length = 920 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ ++ I AFA G DI+ T A+ P++ Sbjct: 681 IRQAFIAEPGFTMVAADYSQIELRIMAHLSDDESLIDAFARGLDIHRATAAEVMGVPLED 740 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+ +Q Sbjct: 741 VTSDMRRSAKAVNFGLIY--GMSAFG-LARQLGISREQ 775 >gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001] gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001] Length = 1047 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKL+ AD + IE R+LA IA +AF G DI+ T + F P+D+ Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQ 863 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ ++ S +K Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 46/78 (58%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+ L+ AD + IE R++A ++ ++ + AF +G+D++ T A+ P+++ Sbjct: 683 IRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIPLEE 742 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 743 VTNDQRRQAKAVNFGLLY 760 >gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] Length = 887 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 104/259 (40%), Gaps = 42/259 (16%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF------- 246 + D G +D+D++ + + IAQ+ ++ L D + L + LF Sbjct: 493 MEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPKQLSVVLFDKLELPK 552 Query: 247 ---LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 TG TL + H + QL +L S+ ++K V DG Sbjct: 553 TKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKSTIEGLIK------TVHDDG 606 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T AS TGR S QN+P R+E A Sbjct: 607 RIHTTFNQTVAS-TGRLSSTEPNLQNIPV--RTE----------------------AGRR 641 Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +RS +G + L+ AD + IE RV+A ++ + I+A+ GED++ ++ F+ PID Sbjct: 642 IRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDLHNFVGSRVFDVPID 701 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R K M L Y Sbjct: 702 DVTPELRRRVKAMSYGLVY 720 >gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] Length = 952 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L +L ++V+ DGR+ T + TGR S QN+P RSEE Sbjct: 664 LESLKKSVAEDGRIHTTYA-QNVAATGRISSNNPNLQNIPI--RSEE------------- 707 Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR + G + L+ AD + IE R++A ++G+ I+A+ +GED++ Sbjct: 708 ---------GRRVRGIFVVGEGYECLLSADYSQIEMRIMAHLSGDQGLIQAYKDGEDLHR 758 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ P ++V+ R+ K M L Y Sbjct: 759 FVGSNIFHVPAEEVTSAMRSKVKAMSYGLAY 789 >gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] Length = 917 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + IE R++A +G+ AFANGEDI+ T A ++ Sbjct: 676 IRKAFIAEEGHTLLAADYSQIELRLMAHFSGDAALCAAFANGEDIHAATAAAVNGIALED 735 Query: 424 VSKEQRAIGKVMELALGY 441 VS E R K + + Y Sbjct: 736 VSGEMRRRAKAINFGILY 753 >gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7] Length = 956 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 28/166 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 662 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 704 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 705 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 756 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 A+ I +V+ +R K + L Y G F +A G+D Sbjct: 757 AAEIMGKDISEVTPSERRAAKAVNFGLLY--GMSAFG-LAKQIGVD 799 >gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 780 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18] gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 897 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA +G +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +K F DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598] Length = 897 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA +G +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +K F DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 35/176 (19%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IAS G L+ AD + IE R+LA IA +AFA G+DI+ T ++ F I++ Sbjct: 725 IRTAFIASEGCLLLSADYSQIELRLLAHIADITALKEAFAQGQDIHAMTASQMFGVAIER 784 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-- 481 +S + R K + + Y G F +A+ G+ ++ S ++ FE + +S+ Sbjct: 785 MSSDVRRRAKAINFGIIY--GISAFG-LANQLGISREEASHYIR--VYFERFPGIQSYME 839 Query: 482 --------HLWMQD------QYPEFAVKDKLI--------------GTACELVKKA 509 H +++ YPE +D+ + G+A +++++A Sbjct: 840 ATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNERAAINAPIQGSAADIIRRA 895 >gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 696 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 453 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 512 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 513 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 554 >gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1] Length = 830 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 24/128 (18%) Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A+ TGR S QN+P + PLG +R +A G Sbjct: 566 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFVAEEG 601 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 KLVV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V R K Sbjct: 602 WKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAK 661 Query: 434 VMELALGY 441 + + Y Sbjct: 662 TINFGVLY 669 >gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] Length = 897 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA +G +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +K F DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] Length = 897 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA +G +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +K F DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] Length = 894 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS IA++G L+ AD + I+ RVLA + + I AF G+DI+ T A+ FN + Sbjct: 655 IRSAFIAADGCLLLAADYSQIDLRVLAHYSQDRELIAAFQGGQDIHRRTAAEIFNVSPEL 714 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R + K + + Y Sbjct: 715 VTAEMRRVAKTINFGIVY 732 >gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 688 Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F P++ Sbjct: 445 IRTAFIAEPGNKLISADYSQIELRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 504 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 505 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 546 >gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1] Length = 959 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 70/166 (42%), Gaps = 28/166 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 A+ I +V+ +R K + L Y G F +A G+D Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY--GMSAFG-LAKQIGVD 802 >gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977] gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977] Length = 839 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 120/289 (41%), Gaps = 49/289 (16%) Query: 171 RELFKRLIPLSDGERDLWLLDQTIND-----------RGYRIDLDLVLKLQELIAQERKK 219 RE+ RL +GE LW L + + RG ++D+D +L L + +A E ++ Sbjct: 422 REMSDRL----EGEERLWWLYREVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELER 477 Query: 220 LDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL--AKD 276 L+ +I +L +SR L L+ G+ + T K S S + L A Sbjct: 478 LEAEIHRLAGHPFNLNSRDQ--LETVLYDELGLAAGRRTAKTGKRSTSASVLETLRGAHP 535 Query: 277 LILNRLASSGSAILK---LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 ++ L A LK L+ L + V GRL G + TGR S QN+P Sbjct: 536 IVEKILQYRELAKLKGTYLDPLPKLVHPRTGRLHTRFHQTGTA-TGRLSSSDPNLQNIP- 593 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 I T+ + + +G +A G LVVAD + IE RVLA + Sbjct: 594 ------IRTEIGRRIRKG-----------------FVAGEGYLLVVADYSQIELRVLAHL 630 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +G++ I+ F G DI+ T A F +V +R K + + Y Sbjct: 631 SGDENLIRIFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLY 679 >gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ I + Sbjct: 687 IRQAFVAPHGYKIMAIDYSQIELRIMAHLSGDRALLEAFQQGKDIHAATAAEILGVDISQ 746 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 747 VTAEQRRRAKAVNFGLIY 764 >gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737] Length = 830 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 78/306 (25%), Positives = 125/306 (40%), Gaps = 51/306 (16%) Query: 159 FGEYCKRDVEA----TRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDL 203 +G K D A + L++ L P +++ ER LWL + + G R+D+ Sbjct: 392 YGGEWKEDAAARALLSERLWQALYPRVAEEERLLWLYREVERPLAQVLAHMEATGVRLDV 451 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + L + +A E ++L+ ++ +L +SR L LF G+ + +E T K Sbjct: 452 PYLEALSQEVAFELERLEAEVHRLAGHPFNLNSRDQ--LERVLFDELGLPPIGKTEKTGK 509 Query: 263 SILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGAS 315 S + + L + I+ R+ ++KL + L V GRL A+ Sbjct: 510 RSTSAAVLELLREAHPIVGRILEY-RELMKLKSTYIDPLPRLVHPKTGRLHTRFN-QTAT 567 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P + PLG +R IA G Sbjct: 568 ATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFIAEEGHL 603 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 LV D + IE RVLA ++G++ I+ F G+DI+ T A F P + V R K + Sbjct: 604 LVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVPPEGVDGAMRRAAKTV 663 Query: 436 ELALGY 441 + Y Sbjct: 664 NFGVLY 669 >gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53] gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53] Length = 936 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 45/78 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G +V D + IE R+LA IAG D +AF +G DI+ T ++ F+ P+D+ Sbjct: 696 IREAFVAAPGNVIVSLDYSQIELRILAHIAGIDALKQAFLDGIDIHAMTASEMFDVPLDQ 755 Query: 424 VSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 756 MTPDIRRQAKAINFGVIY 773 >gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|224590780|gb|ACN59873.1| plastid replication-repair enzyme [Toxoplasma gondii] Length = 2579 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%) Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310 L D S+GTL + ++Q L + AI ++ L E ++S G++ +L Sbjct: 2262 LKDTSDGTL------ARLSQFPAVQALRDYRKAAKAITTFVDKLPEHINSVTGKIHCSLH 2315 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 GA +GR+S Q +PR+ R V S +A Sbjct: 2316 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSKTVA 2351 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 K ++AD + IE R+ A +A ++ I+A+ GED++ T + N P +SK R Sbjct: 2352 GRPGKFIIADFSQIELRIAADLACDERMIEAYRKGEDLHRLTASLILNKPPSLLSKADRQ 2411 Query: 431 IGKVMELALGYQGGAKVFKTMAS 453 + K + L Y A F+ AS Sbjct: 2412 LAKAVNFGLIYGMSADRFRGYAS 2434 >gi|255588755|ref|XP_002534708.1| DNA polymerase I, putative [Ricinus communis] gi|223524716|gb|EEF27672.1| DNA polymerase I, putative [Ricinus communis] Length = 267 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++ + + AFAN EDI+ T A+ F Sbjct: 28 IREAFVAPPGSHIVSADYSQIELRIMAHLSQDAGMLSAFANNEDIHRATAAEIFGVERAA 87 Query: 424 VSKEQRAIGKVMELALGY 441 V EQR KV+ L Y Sbjct: 88 VDSEQRRYAKVINFGLIY 105 >gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c] gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c] Length = 923 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G+KL+ D + IE R++A ++G+ + AF +G D++ A+ F ID+ Sbjct: 682 IRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDE 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +R K + L Y Sbjct: 742 VTLNERRAAKAINFGLIY 759 >gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250] gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|198430821|ref|XP_002124758.1| PREDICTED: similar to DNA polymerase theta [Ciona intestinalis] Length = 1711 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%) Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF-ANGEDIYVTTYAKAFN- 418 S C+R+ +A NGK L+ AD + IE R+LA ++G++ I AF ++G DI+ + A ++ Sbjct: 1445 SFCLRNIFVAGNGKLLISADYSQIELRILAHLSGDETLIAAFNSSGVDIFKSIAAMFYSE 1504 Query: 419 -TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 + ID V+ +QR K + Y GA+ + D Q Sbjct: 1505 ISSIDDVTDKQRDTTKQTCYGILYGMGAQTLAQQMNTSETDAQ 1547 >gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200] Length = 897 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 30/181 (16%) Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + QLA+D + L + KL + L + + ++GR+ + G + TGR Sbjct: 579 SEEVLVQLAEDYEIAALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRL 637 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P I P G +R IA +G +V AD Sbjct: 638 SSSDPNLQNIP---------------------IKSPEGRK---IREAFIAEDGYCIVAAD 673 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + +K F DI+ T A+ ID+VS EQR K + L Sbjct: 674 YSQIELRIMAHLSKDKNLLKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLI 733 Query: 441 Y 441 Y Sbjct: 734 Y 734 >gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 903 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 618 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F D V E R K M L Y Sbjct: 714 QVFGVEKDAVDAEMRRKIKAMSYGLAY 740 >gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] Length = 916 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V S+ R+ + G + TGR S QN+P Sbjct: 621 LNKLKTT-----YVDTLPNLVDSNSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 667 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R +A GK L+ D + +E RVL ++ ++ Sbjct: 668 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 710 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + D V++EQR I K++ ++ Y G AK K Sbjct: 711 IEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVK 770 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + +TFE E E H + ++ Q Sbjct: 771 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERM 830 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 831 AVNTVIQGTAAEVLKKVM 848 >gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a] gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4] Length = 877 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 32/157 (20%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344 KLN+ L + DGR+ + TGR S QN+P R E EI Sbjct: 585 KLNSTYADGLGTYIKEDGRIHSRFN-QTITATGRISSTEPNLQNIPIRMELGREI----- 638 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 R + NG + AD + IE RVLA ++G++ I+A+ Sbjct: 639 --------------------RKVFVPRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKT 678 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +DI+ T ++ F+ P+++V+ QR K + + Y Sbjct: 679 AQDIHAITASQVFHIPLNEVTPLQRRNAKAVNFGIVY 715 >gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] Length = 936 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 +++L +V+ DGR+ T A+ TGR + QN+P RS + + Sbjct: 648 VDSLIASVADDGRIHTTFSQVAAA-TGRLASADPNLQNIP--ARSADGMR---------- 694 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R +A G + L+ AD + IE R++A ++ ++ I AF +GED++ Sbjct: 695 ------------IRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDLHR 742 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F TP+ +V+ +QR+ K L Y Sbjct: 743 TMASMVFGTPVAEVTAQQRSRIKATSYGLAY 773 >gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] Length = 902 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 74/304 (24%), Positives = 121/304 (39%), Gaps = 58/304 (19%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 Y D + T +L +L+PL + E++L + + +I++ LV L ++ E + + Sbjct: 471 YAAEDADVTLQLHHKLMPLIEKEKNLKKVFE-------QIEMPLVPILMQM---EMRGVL 520 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL---------------- 265 D L I S + L + + G + S L++IL Sbjct: 521 VDTAMLQAQSIELSGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ 580 Query: 266 --SHSNITQ-LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + N+ Q LA D L ++ ++ KL T L V R T + T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P R+EE +R IA G ++V Sbjct: 641 GRLSSNNPNLQNIPI--RTEE----------------------GRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E R++A I+ + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGY 441 L Y Sbjct: 737 GLLY 740 >gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] Length = 871 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 64/150 (42%), Gaps = 27/150 (18%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351 + LS +S DGR+ G + TGR S QN+P R E L R Sbjct: 586 DGLSNYISGDGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR-- 630 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R I +G + AD + IE RVLA +G++ I A+ +DI+ Sbjct: 631 -----------LIRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRI 679 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F+ P +V+ QR K + + Y Sbjct: 680 TASQVFHVPFGEVTDLQRRNAKAVNFGIVY 709 >gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAF-GLAKQIGVDRKQ 776 >gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076] gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 26/148 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + ++ DGR+ T A+ TGR S QN+P +T++ Sbjct: 616 LVKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIP---------IRTVEGRR------ 659 Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G + L+ AD + IE R++A ++G++ I AF +G D + TT Sbjct: 660 ---------IRQGFVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFESGHDFHKTTA 710 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ F+ ++V+ E RA K M L Y Sbjct: 711 ARVFDIEPEQVTGEMRAKIKAMNYGLAY 738 >gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213] gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213] Length = 951 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 68/301 (22%), Positives = 127/301 (42%), Gaps = 52/301 (17%) Query: 165 RDVEATRELFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIA 214 D+ REL L P+ D R WL+ + G +ID + +++ A Sbjct: 516 HDLAVIRELAVTLGPVIDERRQYWLMRAIELPVSRVLHGMEQSGAKIDRSRLTDMRDRFA 575 Query: 215 QERKKLDEDIVKLTDGII--RSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSI 264 + ++ E + G I +S +Q L+ LF+ G+ ++ L+++ Sbjct: 576 ADARQAQEMAWQYAGGEINLQSPKQ---LQKVLFVDMGLKPTKRTKNGSYTTNAAALQNL 632 Query: 265 LSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 HS + A + L + LK + TL +A + +D R+ T + A+ TGR S Sbjct: 633 YIHSVDNEQANGFLGALLRHRETNKLKQIVQTLIDATNKADERIHTTFEQTVAA-TGRLS 691 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVAD 380 QN+P + A+ R +RS + G + L+ D Sbjct: 692 SVDPNLQNIPNR-----------NAVGR-------------EIRSVFVPGEGYEALMSCD 727 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + +E R++A ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Sbjct: 728 YSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYGVPVDQITGDQRSHVKAMSYGLA 787 Query: 441 Y 441 Y Sbjct: 788 Y 788 >gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] Length = 905 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 70/147 (47%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +++ DGR+ T Q A+ TGR S QN+P I T++ + + R + Sbjct: 620 LIKSIGDDGRIHTTYQQTIAA-TGRLSSTDPNLQNIP-------IRTESGRRIRRVFVV- 670 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 G DC+ S AD + IE RV+A ++G++ I+AF +GED++ + Sbjct: 671 ---GEGYDCLMS------------ADYSQIEMRVMAHLSGDEGLIQAFNDGEDLHRFVGS 715 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F +V+ E RA K M L Y Sbjct: 716 RVFGVEPSEVTSEMRAKVKAMSYGLAY 742 >gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1] gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1] Length = 911 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 76/312 (24%), Positives = 119/312 (38%), Gaps = 64/312 (20%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND-----------RGYRIDLDL 205 L Y D E T + + P D E L L +TI G +D D+ Sbjct: 475 HLAAPYACEDAEVTWQAAASMAPNLDREPGLKRLYETIERPLIPVLAEMEYAGVLVDRDV 534 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + + ++ R +L E+I +L G + + T L LF GI ++ + + Sbjct: 535 LSTMSADFSKRRARLVEEIHELA-GEVFNVNSTQQLGHILFEKMGIKGGKRTKSGFSTDV 593 Query: 266 SHSNITQLAKDLILNRLASSGSAI----LKLNTLSEAVSS------------DGRLRGTL 309 S +L++LA G I L +L++ S+ GR+ + Sbjct: 594 S-----------VLSKLADDGEKIPQQVLAYRSLTKLQSTYTDALVALIHPYTGRVHTSY 642 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P R+EE +R+ I Sbjct: 643 N-QAVTLTGRLSSSDPNLQNIPI--RTEE----------------------GRAIRTAFI 677 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G L+ AD + IE RVLA + +AF G DI+ T A+ F P+ +V+ E R Sbjct: 678 APAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGLDIHAATAAELFGVPLAQVTGEHR 737 Query: 430 AIGKVMELALGY 441 + K + L Y Sbjct: 738 RMAKTINFGLVY 749 >gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL] gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL] Length = 850 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 41/79 (51%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F ID Sbjct: 610 LIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQTAAEIFGVDID 669 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 99/412 (24%), Positives = 161/412 (39%), Gaps = 87/412 (21%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L DE ++ + N ++ + K+ GID+ P + S A GL +A S Sbjct: 417 LEDEAILKIGQNMKYDAKILKRC-GIDVAPCDDTMLIS-YALNAGLHQHGMDALADRYLS 474 Query: 120 EHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++E GKA+I F K ID TR Y D + T L++ Sbjct: 475 HTCIPIKELLGTGKAMIT-FDKVPIDK----ATR------------YAAEDADVTLRLWQ 517 Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P ER L + + G ++D D + ++ AQ+ L+ +I Sbjct: 518 VLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLSRMSSAFAQKMGALEAEIH 577 Query: 226 KLTDG--IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI----- 278 +L + S +Q L LF D + M G +++ + +DL Sbjct: 578 ELAGERFNVGSPKQ---LGEILF-----DKMGMEGGKKGKTGAYATGADVLEDLATLHEL 629 Query: 279 ---------LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L++L S+ + L+ + E GR+ + Q GA+ TGR + QN Sbjct: 630 PARVLDWRQLSKLKSTYTDSLQTHIHPET----GRVHTSYQQTGAN-TGRLASTDPNLQN 684 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P RSEE +R IA GK L+ D + IE R+L Sbjct: 685 IPV--RSEE----------------------GRRIREAFIAEEGKVLLSLDYSQIELRIL 720 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A IA +AF G+DI+ T ++ F P+++++ E R K + + Y Sbjct: 721 AHIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIY 772 >gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] Length = 944 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE R++A ++ ++ ++AF G+D++ T A+ F + Sbjct: 697 IREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLMRAFREGQDVHRATAAEVFGVTPLE 756 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ EQR KV+ L Y G F +AS+ G+ Sbjct: 757 VTAEQRRYAKVINFGLIY--GMSAFG-LASNLGI 787 >gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] Length = 978 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE R+LA +A +AFA+G DI+ T ++ F P++ Sbjct: 735 IRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 794 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 795 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 836 >gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 903 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 618 LIKTIATDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F D V E R K M L Y Sbjct: 714 QVFGVEKDAVDAEMRRKIKAMSYGLAY 740 >gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201] gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201] Length = 960 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 23/165 (13%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L +A++ DGR+ T Q A+ TGR S QN+P R E+ + I + GE Sbjct: 671 LRDAIAEDGRIHTTYQQTVAA-TGRLSSTGPNLQNIPVRTEQGQRIRDVFVV----GEDT 725 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 P +C L+ AD + IE R++A ++G++ I+AF GED++ Sbjct: 726 QGPF----EC------------LMTADYSQIEMRIMAHLSGDEGLIEAFRGGEDLHRFVG 769 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++ F+ + V+ + R+ K M L Y G + + H G+D Sbjct: 770 SRVFDVAPEDVTPQMRSKVKAMSYGLVY-GLSSYGLSQQLHIGVD 813 >gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] Length = 921 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205] Length = 985 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 80/316 (25%), Positives = 130/316 (41%), Gaps = 68/316 (21%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLW------LLDQT----------INDRGYRIDLDL 205 YC DV T RL PL G+ + LLDQ + G RID D Sbjct: 536 YCGMDVHVTY----RLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDY 591 Query: 206 VLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVDMSE----- 258 + +L + ++L+ D + TD + S +Q L LF G+D + Sbjct: 592 LGELSRELKATLERLESDAKEAAGTDFNLASPKQ---LGELLFDTLGLDRKKSRKTKTGW 648 Query: 259 GTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 T ++L +H + + + L++L S+ + L L EA + GR+ Sbjct: 649 STDATVLEKLEDAHPVVPLVLEHRTLSKLKST--YVDALPALMEAET--GRVHTDFN-QA 703 Query: 314 ASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P R E S I R + Sbjct: 704 VTATGRLSSSNPNLQNIPVRTEFSRRI-------------------------RKAFLPEA 738 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G L+ AD + IE R+LA ++GE+ +KA+ +G+D++ T F+ D+V+ ++R +G Sbjct: 739 GWTLISADYSQIELRILAHLSGEEVLVKAYQSGDDVHALTARLLFDK--DEVTSDERRLG 796 Query: 433 KVMELALGYQGGAKVF 448 K + + Y G + F Sbjct: 797 KTINFGVIYGMGVQRF 812 >gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132] gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132] Length = 888 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 97/422 (22%), Positives = 154/422 (36%), Gaps = 127/422 (30%) Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS---------HSNITQLAKDLILNRL 282 IRSS+Q L + LF GI + L+S + H + + + +L +L Sbjct: 541 IRSSQQ---LAVVLFDQLGIKAGSKTSTGLRSTANQVLEKIRDQHPIVDAVLEFRMLEKL 597 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S+ L L + V DGRL ++ TGR S QN+P + Sbjct: 598 RST-----YLEPLPKMVGEDGRLHTHFNQL-STATGRLSSSQPNLQNIPIR--------- 642 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 G+ +R+C A+ G L AD + IE RVLA + + I AF Sbjct: 643 ---------------GVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAF 687 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + EDI+ T A + I V+ ++R K + L Y G+ +Q+ Sbjct: 688 RHDEDIHARTAALIHDKDISAVTPDERRGAKTINFGLIY--------------GMGVQKL 733 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 ++ ++ T E E E + FA L +VK A Sbjct: 734 ARELQIKQT-EAQEFTEKY----------FAKMATLKAYYDTVVKDAE------------ 770 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 T GF +++ RR RL+ H R+ + + R+ V NT Sbjct: 771 --THGFVT------TLAGRR-----RLLPELHSRNNQLSAQARRQAV-----------NT 806 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSET 636 ++Q + DI+ M A K+ G ++L VHDE++ E Sbjct: 807 ------------------VIQGSAADIIKMAMVQAHKDKRLRELGAQLILQVHDELIIEA 848 Query: 637 PD 638 P+ Sbjct: 849 PE 850 >gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 822 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 583 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 642 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 643 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 677 >gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2] gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2] Length = 1000 Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 35/177 (19%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G LV AD + IE R+LA IA AF G DI+ T ++ FN P+ Sbjct: 757 IRRAFVAEEGNLLVSADYSQIELRLLAEIAEIPALRTAFTEGLDIHAMTASEMFNVPVKD 816 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-------E 476 + E R K + + Y G F +A+ G+ ++ Q +K FE + E Sbjct: 817 MPAEVRRRAKAINFGIIY--GISAFG-LANQLGIPREEAGQYIK--RYFERFPGIRDYME 871 Query: 477 QAES---HHLWMQD------QYPEFAVKD--------------KLIGTACELVKKAW 510 + ++ H +++ YPE A K+ +L GTA +++++A Sbjct: 872 ETKTFCREHGYVETLFGRRCHYPEIAAKNPSIRAFNERAAINARLQGTAADIIRRAM 928 >gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B] Length = 832 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 593 IRQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELEN 652 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 653 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 687 >gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87] Length = 687 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R+LA +A E I+AF G DI+ T + F+ + Sbjct: 448 IRKAFVAQKGYKLLSADYSQIELRMLAHMANETHMIEAFKEGADIHNRTASHIFHVSQED 507 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R + K + + Y Sbjct: 508 VTPDMRRVAKTVNFGIVY 525 >gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31] gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31] Length = 916 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 106/258 (41%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V S+ R+ + G + TGR S QN+P Sbjct: 621 LNKLKTT-----YVDTLPNLVDSNSRIHTSFNQIGTA-TGRLSSSEPNLQNIP------- 667 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R +A GK L+ D + +E RVL ++ ++ Sbjct: 668 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 710 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + D V++EQR I K++ ++ Y G AK K Sbjct: 711 IEAYREEKDLHDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVK 770 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + +TFE E E H + ++ Q Sbjct: 771 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERM 830 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 831 AVNTVIQGTAAEVLKKVM 848 >gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] Length = 1001 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+KL+ AD + IE RVLA +A KAF +G DI+ T ++ F TPI+ Sbjct: 758 IRQAFIAEKGQKLISADYSQIELRVLAHMADIPQLKKAFEDGLDIHAMTASEMFGTPIEG 817 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + R K + + Y G F +A+ G+ + +K+ Sbjct: 818 MDPMVRRQAKAINFGIIY--GISAFG-LANQLGISRGEAGDYIKT 859 >gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M] gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] Length = 994 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G KL+ AD + IE R+LA +A +AFA+G DI+ T ++ F P++ Sbjct: 751 IRTAFIAEPGNKLISADYSQIELRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEG 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ + ++ Q +++ Sbjct: 811 MPSEVRRRAKAINFGIIY--GISAFG-LANQLSIPREEAGQYIRT 852 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 29/164 (17%) Query: 282 LASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSE 337 L G A LK NT ++ + S D R ++ A + TGR S QN+P Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPNLQNIP------ 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 I P+G +R IA G+ L+ AD + IE R++A + +D Sbjct: 676 ---------------IRTPIGRQ---IRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDA 717 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + AF G+D++ T A+ I+ V+ +QR K + L Y Sbjct: 718 LVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY 761 >gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 71/164 (43%), Gaps = 29/164 (17%) Query: 282 LASSGSAILKLNTLSEAV---SSDGRLRGTLQFYGA-SRTGRWSGCVFQPQNLPRQERSE 337 L G A LK NT ++ + S D R ++ A + TGR S QN+P Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDSTHRVHTSYHQALTATGRLSSTDPNLQNIP------ 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 I P+G +R IA G+ L+ AD + IE R++A + +D Sbjct: 676 ---------------IRTPIGRQ---IRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDA 717 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + AF G+D++ T A+ I+ V+ +QR K + L Y Sbjct: 718 LVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLY 761 >gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2] gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2] Length = 935 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 25/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + GA TGR + QN+P RSEE Sbjct: 659 GRVHTSYSLTGAV-TGRLASTDPNLQNIP--VRSEE----------------------GR 693 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A G++LV D + IE R+LA +A +AF G+DI+ T ++ FN P+D Sbjct: 694 RIREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFREGQDIHAMTASEMFNVPLD 753 Query: 423 KVSKEQRAIGKVMELALGY 441 +++ + R K + + Y Sbjct: 754 QMTPDIRRQAKAINFGVIY 772 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 642 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 701 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 702 VTNDQRRQAKAVNFGLLY 719 >gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024] gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771] Length = 564 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 319 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 378 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 379 MPGEVRRRAKAINFGIIY 396 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] Length = 924 Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD IE R+LA +A KAF+N EDI+ T ++ FN I K Sbjct: 679 IRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSLTASQVFNVDIKK 738 Query: 424 VSKEQRAIGKVMELALGY 441 V ++ R K + + Y Sbjct: 739 VDQDMRRKAKAINFGIIY 756 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|294840299|ref|ZP_06784982.1| DNA polymerase I [Acinetobacter sp. 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] Length = 923 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] Length = 924 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD IE R+LA +A KAF+N EDI+ T ++ FN I K Sbjct: 679 IRKAFIAEKGFTLISADYNQIEMRILADLAEVKELKKAFSNNEDIHSLTASQVFNVDIKK 738 Query: 424 VSKEQRAIGKVMELALGY 441 V ++ R K + + Y Sbjct: 739 VDQDMRRKAKAINFGIIY 756 >gi|325117229|emb|CBZ52781.1| hypothetical protein NCLIV_025690 [Neospora caninum Liverpool] Length = 2215 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 86/203 (42%), Gaps = 32/203 (15%) Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-LNTLSEAVSS-DGRLRGTLQ 310 L D S+GTL + +TQ L + AI ++ L + ++S G++ +L Sbjct: 1898 LKDTSDGTL------ARLTQYPAVQALRDYRKAAKAITTFVDKLPQHINSVTGKIHCSLH 1951 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 GA +GR+S Q +PR+ R V S +A Sbjct: 1952 QCGAG-SGRFSCDSPNLQQIPRERRFRACF-----------------------VPSAKVA 1987 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 K ++AD + IE R+ A +A ++ I+A+ GED++ T + N P +SK R Sbjct: 1988 GRPGKFIIADFSQIELRIAADLACDERMIEAYQKGEDLHKLTASLILNKPASTLSKADRQ 2047 Query: 431 IGKVMELALGYQGGAKVFKTMAS 453 + K + L Y A F+ AS Sbjct: 2048 LAKAVNFGLIYGMSADRFRGYAS 2070 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|294839290|ref|ZP_06783973.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013113] gi|294858990|ref|ZP_06796759.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013150] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] Length = 923 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] Length = 923 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E] gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii] gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii] gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii] gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22] Length = 867 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N EDI+ T + FN + Sbjct: 630 IREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQIFNLKKHE 689 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 690 LTSEHRRKAKAINFGIIY 707 >gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] Length = 877 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ + D R+ G + TGR S QN+P + Sbjct: 594 LAVYIGEDNRIHGKFN-QTITATGRISSTEPNLQNIP---------------------VR 631 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 PLG +R I G + AD + IE R+LA ++ + I A+ + +DI+ T + Sbjct: 632 MPLGRE---IRKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATAS 688 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 F+ P+++V+KEQR+ K + + Y Sbjct: 689 LVFHVPLEEVTKEQRSNAKAVNFGIVY 715 >gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] Length = 1020 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T ++ F PI Sbjct: 777 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 836 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ ++ S +K Sbjct: 837 MPSEVRRRAKAINFGIIY--GISAF-GLANQLGIAREEASAYIK 877 >gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1] gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1] Length = 829 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 27/150 (18%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + + GR+ G G + TGR S QNLP Sbjct: 550 VKALLKRIDETGRVHGNFIQTGTA-TGRLSSAEPNLQNLP-------------------- 588 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 ++DPL L VR + A G LV AD + +E R+LA ++ + I+AF GEDI+ Sbjct: 589 -VSDPLSLR---VRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHTE 644 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T F+T +++ +R + K + + Y Sbjct: 645 TAKHLFHT--RQITDRERRVAKTVNFGIIY 672 >gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] Length = 903 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 618 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F D V E R K M L Y Sbjct: 714 QVFGVGKDAVDAEMRRKIKAMSYGLAY 740 >gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] Length = 936 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 44/82 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G + AD + IE R++A ++ + + AF G D++ T A+ F +D+ Sbjct: 697 VREAFVAPAGCVIASADYSQIELRIMAHLSDDQALLHAFHAGLDVHRATAAEVFGVALDQ 756 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 VS EQR KV+ L Y G+ Sbjct: 757 VSSEQRRYAKVINFGLIYGMGS 778 >gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 732 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 487 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 546 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 547 MPGEVRRRAKAINFGIIY 564 >gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168] gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168] Length = 928 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 75/303 (24%), Positives = 125/303 (41%), Gaps = 46/303 (15%) Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-LSDGERDLWLLDQTINDRGYRIDLD 204 D T H++ W ++ K + + L+P LS ER+ ++D + ++ + Sbjct: 503 DVTLQLHLKMWPELQQH-KGPLNVFENIEMPLVPVLSRVERNGVMIDPAVL---HKHSEE 558 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + L+L EL E+K D G + T L+ LF GI + + G S Sbjct: 559 ITLRLAEL---EQKAHD------IAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPST 609 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS-----SDGRLRGTLQFYGASRTG 318 S + +LA D L ++ + KL +T ++ + GR+ T + TG Sbjct: 610 -SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPKTGRVH-TSYHQAVTATG 667 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P R+EE +R I +V Sbjct: 668 RLSSTDPNLQNIPV--RNEE----------------------GRRIRQAFIPPKDHVIVS 703 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 704 ADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFG 763 Query: 439 LGY 441 L Y Sbjct: 764 LIY 766 >gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] Length = 997 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 752 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 811 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 812 MPGEVRRRAKAINFGIIY 829 >gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 893 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 26/148 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L AV +DGR+ T Q A+ TGR S QN+P +T + + Sbjct: 608 LISAVGADGRIHTTFQQTVAA-TGRLSSTEPNLQNIP---------ARTAEGMR------ 651 Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G L+ AD + IE R++A ++ ++ I+AF +GED++ T Sbjct: 652 ---------IRGAFVPGTGFDYLLTADYSQIEMRLMAHMSKDEALIEAFKSGEDLHRTMA 702 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 A F P+++V+ R+ K L Y Sbjct: 703 AMVFAVPVEEVTPALRSQIKATSYGLAY 730 >gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] Length = 880 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L+ + D R+ G + TGR S QN+P R E Sbjct: 595 DGLANYIGDDERIHGKFN-QTITATGRISSTEPNLQNIPA--RVE--------------- 636 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 LG A +R + G V AD + IE RVLA ++G+ I A+ +DI+ T Sbjct: 637 ----LGRA---IRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQDIHART 689 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F PID+VS QR K + + Y Sbjct: 690 ASEVFGVPIDQVSSIQRRDAKAVNFGIVY 718 >gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] Length = 1016 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 771 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 831 MPGEVRRRAKAINFGIIY 848 >gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CNPAF512] Length = 997 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 752 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 811 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 812 MPGEVRRRAKAINFGIIY 829 >gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 921 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDLDVHRATAAEVFGVELEG 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTNDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 999 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 754 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 813 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 814 MPGEVRRRAKAINFGIIY 831 >gi|238899051|ref|YP_002924733.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466811|gb|ACQ68585.1| phage DNA-directed DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 130 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 1/83 (1%) Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 G L+ + L +L + + LI R ++ K L V +D R G L Sbjct: 10 GYPLMQFDKAILGEVLKDDTLPDTDRRLIEIRQQLGKTSTAKYAALKALVMNDHRAHGLL 69 Query: 310 QFYGASRTGRWSGCVFQPQNLPR 332 ++GAS TGRWSG FQPQNLPR Sbjct: 70 MYHGAS-TGRWSGRHFQPQNLPR 91 >gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum] Length = 1016 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 771 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 831 MPGEVRRRAKAINFGIIY 848 >gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] Length = 933 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 45/233 (19%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L ++V+ DGR+ T Q A+ TGR S QN+P R+EE G I Sbjct: 642 LRKSVADDGRIHTTYQQMIAA-TGRLSSTDPNLQNIPI--RTEE-----------GRRIR 687 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + + D A +G + L+ AD + IE R++A ++G++ I AF +GED++ Sbjct: 688 EAFVVGPDAG-----AGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLHRFVG 742 Query: 414 AKAFN-TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 ++ F P+D V+ E RA K M L Y GL S +K ++ Sbjct: 743 SRVFGVAPVD-VTPEMRAKIKAMSYGLAY--------------GLSAFGLSNQLKIST-- 785 Query: 473 EDWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 E+A+ M + + F V+D L G E + W G + DL Sbjct: 786 ---EEAKD---LMDEYFQRFGGVRDYLHGVVEEARRTGWTETIMGRRRYLPDL 832 >gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] Length = 942 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 41/66 (62%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++ E + AF NGEDI+ +T A+ F I++V++ QR+ K + Sbjct: 715 LLAADYSQIELRIIAALSQEKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTV 774 Query: 436 ELALGY 441 + Y Sbjct: 775 NFGIIY 780 >gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] Length = 844 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%) Query: 361 SDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 ++ R C++ ++ K + + AD + IE RVLA + GE ++AF G DI+ T + + Sbjct: 602 AEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLVQAFEAGRDIHRETASWVYGV 661 Query: 420 PIDKVSKEQRAIGKVMELALGY 441 ++VS EQR KV+ L Y Sbjct: 662 AAEEVSAEQRRFAKVVNFGLLY 683 >gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] Length = 867 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/159 (28%), Positives = 67/159 (42%), Gaps = 31/159 (19%) Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342 I K+N+ L V DGR+ + TGR S QN+P + E EI Sbjct: 572 ITKINSTYVEGLKNVVDEDGRIHSNFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIRKV 630 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 I P+ +D + SC D + IE RVLA IAG++ I AF Sbjct: 631 FI-----------PME-ETDILVSC------------DYSQIELRVLAHIAGDENMIDAF 666 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + DI+ T ++ F PI +V+ R+ K + + Y Sbjct: 667 EHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIVY 705 >gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42] gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CFN 42] Length = 999 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 754 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 813 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 814 MPGEVRRRAKAINFGIIY 831 >gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX] gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX] Length = 929 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + ++ DGR+ T + TGR S QN+P + + G I Sbjct: 644 LIKTIAEDGRIHTTFH-QTVTATGRLSSAEPNLQNIPVRT-------------DAGRRIR 689 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 R+ ++ ++L+ AD + IE R++A ++ ++ I+AF +G D + + Sbjct: 690 ----------RAFVVGEGYEQLLTADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIAS 739 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F P+D+V E RA K M L Y Sbjct: 740 RVFRIPVDQVDGEARARIKAMNYGLAY 766 >gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] Length = 887 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 12/139 (8%) Query: 331 PRQERSEEILTQTIQALNRGETIADP--------LGLASDCVRSCIIASNGKKLVVADLA 382 P E+ QT+ A R + +DP L + R + +S LV AD + Sbjct: 608 PETEKIYSHFNQTVTATGRISS-SDPNLQNIPVRTDLGREIRRVFVPSSPMCVLVDADYS 666 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA + ++ ++AFA +DI+ T ++ F P++ V++EQR+ K + L Y Sbjct: 667 QIELRVLAHLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIY- 725 Query: 443 GGAKVFKTMASHCGLDLQQ 461 G + F ++ G+ Q Sbjct: 726 -GKQAF-SLGKELGIGRNQ 742 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 71/174 (40%), Gaps = 25/174 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +AS G +L+ AD + IE R+LA ++ + I AF G D++ +T A+ F + Sbjct: 633 IRQAFVASEGHRLLSADYSQIELRILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEA 692 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V+ E R KV+ + Y G A + L + ++ Q F D E Sbjct: 693 VTVEMRRRAKVINFGIVYGMSPFGLAAELEISQEEAALYIDRYFQIYHGVKAFIDRTICE 752 Query: 480 SHHLWMQDQY-------PEFAVKDKLI--------------GTACELVKKAWRA 512 + L + PE D+ + G+A +L+K A A Sbjct: 753 ARELGFVSTFWGRRRAIPELKSSDQTVRQLGERLAVNTPIQGSAADLIKVAMIA 806 >gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] Length = 924 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +L+ AD + IE R++A ++ + ++AF G D++ T A+ F +++ Sbjct: 685 IRRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEE 744 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +R K + L Y G F +A + G+D Q Sbjct: 745 VTPNERRAAKAINFGLMY--GMSAFG-LARNLGIDRGQ 779 >gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1] Length = 584 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 1/120 (0%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R GKKL+VAD + IE R+ A ++ IKAF+ G+D++ T + D+ Sbjct: 349 LRVLFRPPEGKKLIVADYSQIELRIAAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQ 408 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHC-GLDLQQFSQNVKSTSTFEDWEQAESHH 482 ++K++R + K + L Y + A + G+D+ + + FE ++ +S H Sbjct: 409 ITKDERQMAKAINFGLIYGISPRSLMEYARNSYGVDISLKDAQIFHSRFFEVYKGFKSWH 468 >gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 895 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 + TL +V+ DGR+ T G S TGR S QN+P R E EI + Sbjct: 607 VETLERSVTGDGRIHTTYDQTGTS-TGRISSNDPNLQNIPIRTEEGREIRS--------- 656 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 S + + L+ AD + IE R++A ++ + I+AF GED++ Sbjct: 657 ---------------SFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLIEAFNAGEDLHR 701 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F P ++V+ R K M L Y Sbjct: 702 FVGSRVFGVPPEEVTPLMRTKVKAMSYGLAY 732 >gi|326773414|ref|ZP_08232697.1| DNA polymerase I [Actinomyces viscosus C505] gi|326636644|gb|EGE37547.1| DNA polymerase I [Actinomyces viscosus C505] Length = 946 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 29/165 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +A+ +DGR+ T Q A+ TGR S QN+P R EE + Sbjct: 661 LRKAIQADGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARHEEGMR------------- 704 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R G + L+ AD + IE R++A ++ + I+AF +GED++ Sbjct: 705 ---------IREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIEAFRSGEDLHRYVA 755 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 A ++ V+ +QR+ K M L Y G F +A G+D Sbjct: 756 ALVHGIEVEDVTAQQRSHVKAMSYGLAY--GLSTFG-LARQLGID 797 >gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] Length = 946 Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 ++ L + DGR+ + + TGR S QN+P R +R +EI Sbjct: 659 VDALPLLLGKDGRVHTSFN-QAVAATGRLSSTNPNLQNIPIRTDRGKEIR---------- 707 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R+ + N ++ AD + IE R++A + ++ + AF G DI+ Sbjct: 708 --------------RAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAFRKGVDIHS 753 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 TT +K F PI+ V+ + R K++ + Y Sbjct: 754 TTASKVFKVPIEDVTADMRRKAKMVNFGIIY 784 >gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 976 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 71/306 (23%), Positives = 123/306 (40%), Gaps = 63/306 (20%) Query: 162 YCKRDVEATRELFKRLIP--LSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P +++G ER L + + +RG ++D ++ +L Sbjct: 542 YAAEDADVTLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDRQILSRLSG 601 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 AQ++ L+ +I ++ G + L LF G+ G K+ Sbjct: 602 RFAQKQAGLEAEIAEIA-GETFNPGSPKQLGEVLFGKLGL------PGGKKT-----KSG 649 Query: 272 QLAKDL-ILNRLASSGSAILK---------------LNTLSEAVSSDGRLRGTLQFYGAS 315 Q + D+ +L LA+ G + + +TL + + GR+ + ++ Sbjct: 650 QWSTDVRVLEDLAAEGHPLPRRIVDWRQLTKLKGTYTDTLPGHMDAQGRIHTSYSM-AST 708 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R+EE +R+ +A G Sbjct: 709 TTGRLSSSEPNLQNIPV--RTEE----------------------GRAIRTAFVAPAGHS 744 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 LV AD + IE R+LA IA +AF G DI+ T ++ F P++ + E R K + Sbjct: 745 LVSADYSQIELRILAHIADIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAI 804 Query: 436 ELALGY 441 + Y Sbjct: 805 NFGIIY 810 >gi|328545870|ref|YP_004305979.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] Length = 994 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ AD + IE RVLA +A +AFA+G DI+ T ++ F PI+ Sbjct: 751 IRKAFVADKGRKLISADYSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEG 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + R K + + Y G F +A+ GL + +K+ Sbjct: 811 MDPMVRRRAKAINFGIIY--GISAFG-LAAQLGLSRGEAGDYIKT 852 >gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6] gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6] Length = 931 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 46/83 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A ++ ++ + AF + D++ T A+ F + + Sbjct: 692 IRQAFVAPKGYKLLAADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAK 446 V+ +QR K + L Y GA+ Sbjct: 752 VTSDQRRSAKAINFGLIYGMGAQ 774 >gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT] gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT] Length = 878 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 58/258 (22%), Positives = 109/258 (42%), Gaps = 40/258 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITGIDLV 254 G+R+D + + ++ E +E + L+++I +L D I+S +Q + + I Sbjct: 494 EGFRVDENRLTEIGEKFKKEIETLEKEIHELADEEFNIKSPKQLGKILFEKLDLPVIKKT 553 Query: 255 DMSEGTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 T +L SH I ++ + + +L S+ + L + D ++ + Sbjct: 554 KTGYSTNAEVLEKLKDSHPIIEKIIEYRQITKLDSTY-----VEGLKNVIDEDAKIHSSF 608 Query: 310 QFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + TGR S QN+P + E EI R Sbjct: 609 N-QTVTTTGRLSSTEPNLQNIPIKHEMGREI-------------------------RKVF 642 Query: 369 IASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + +N + ++ AD + IE R+L+ IA ++ I AF + +DI+ T ++ F PID+V+ Sbjct: 643 VPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIHTITASEVFKVPIDEVTPL 702 Query: 428 QRAIGKVMELALGYQGGA 445 R+ K + + Y GA Sbjct: 703 MRSNAKAVNFGIVYGIGA 720 >gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13] gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13] Length = 901 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA+ ++V D + IE R++A ++ + + AF EDI+ +T + FNT Sbjct: 662 VREAFIANTDSQIVSCDYSQIELRIMAHLSKDPGLLDAFNQNEDIHRSTASAIFNTNDAS 721 Query: 424 VSKEQRAIGKVMELALGY 441 VS EQR KV+ L Y Sbjct: 722 VSSEQRRFAKVINFGLIY 739 >gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297] gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297] Length = 933 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 25/156 (16%) Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 G+ L T++ D RL T GA +TGR + QN+P RSEE Sbjct: 641 GTYTDPLPTMTIDHDGDQRLHTTYNQTGA-QTGRLNSNDPNLQNIPV--RSEE------- 690 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G ++V AD + IE R++ ++ + I+AF G Sbjct: 691 ---------------GRSIRKAFVAPQGYRIVAADYSQIELRIMTHLSQDANLIQAFREG 735 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +DI+ T A+ ++VS EQR K + L Y Sbjct: 736 KDIHRATAAEVMGIEEEQVSAEQRRSAKAINFGLIY 771 >gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71] gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71] Length = 909 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/174 (25%), Positives = 78/174 (44%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G ++V AD + IE R++A ++ + ++AF D++ T A+ F +D Sbjct: 670 IRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAGLLEAFRENLDVHSATAAEVFGVSLDA 729 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTSTFEDWE 476 VS EQR K + L Y G F +A LD + + + + D Sbjct: 730 VSGEQRRKAKAINFGLIY--GMSAFG-LARQLRLDRGEAQRYIDVYFERYPGVREYMDNT 786 Query: 477 QAESHH------LWMQDQY-PEFAVKDK--------------LIGTACELVKKA 509 +A +H L+ + Y PE V++K + GTA +++K+A Sbjct: 787 RALAHEQGYVETLFGRRLYLPEINVRNKNRQQAAERTAINAPMQGTAADIIKRA 840 >gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss] gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14] gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg] Length = 866 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + +E R LA ++ ++ +AF +GEDI+ T ++ FN P+D+V++ QR K + Sbjct: 641 FLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAV 700 Query: 436 ELALGY 441 L Y Sbjct: 701 NFGLAY 706 >gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145] gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145] Length = 924 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 63/270 (23%), Positives = 118/270 (43%), Gaps = 37/270 (13%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQ 237 L+D E L + + + G ++D +++ K E IA + +L++ ++ + + S +Q Sbjct: 520 LTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKLDELEQKAFEIAGEEFNLGSPKQ 579 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT--- 294 L+ LF + ++ + S + + +LA D L + ++ KL + Sbjct: 580 ---LQQILFEKLELPVIKKTPKGAPST-AEEVLQELAHDYPLPDVILQHRSLAKLKSTYT 635 Query: 295 --LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L ++ D GR+ + Q + TGR S QN+P Sbjct: 636 DKLPRMINPDTGRVHTSYQ-QAVAATGRLSSTEPNLQNIP-------------------- 674 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I P G VR +A G +V D + IE R++A ++ + ++AFA G+DI+ Sbjct: 675 -IRTPEGRR---VRQAFVAEEGFTVVAIDYSQIELRIMAHLSQDASLLRAFAQGQDIHRA 730 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F +++V+ EQR K + L Y Sbjct: 731 TASEVFGCSLEEVTDEQRRRAKAVNFGLIY 760 >gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] Length = 830 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 24/128 (18%) Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A+ TGR S QN+P + PLG +R +A G Sbjct: 566 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFVAEEG 601 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 +LVV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V R K Sbjct: 602 WRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHTQTASWMFGVPPEAVDSLMRRAAK 661 Query: 434 VMELALGY 441 + + Y Sbjct: 662 TINFGVLY 669 >gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278] gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278] Length = 1034 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T ++ F PI Sbjct: 791 IRRAFIATPGYKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 850 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ ++ S +K Sbjct: 851 MPSEVRRRAKAINFGIIY--GISAF-GLANQLGIAREEASAYIK 891 >gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183] gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183] Length = 906 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 27/166 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 +++L + DGR+ T A+ TGR S QN+P I T + + G Sbjct: 618 VDSLIPMAAEDGRIHTTFNQMVAA-TGRLSSTDPNLQNIP-------IRTAEGRQIREGF 669 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + G +C L+ AD + IE R++A ++G++ I+AF +G D + Sbjct: 670 VV----GEGYEC------------LLTADYSQIELRIMAHLSGDEALIEAFTSGADFHTI 713 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 T ++ F P +++ E RA K M L Y G F +AS G+ Sbjct: 714 TASRVFGLPPEQIDGELRARIKAMNYGLAY--GLSPFG-LASQLGI 756 >gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] Length = 879 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ + DGR+ G + TGR S QN+P R E +I Sbjct: 596 LAVYILEDGRIHGHFN-QTITATGRISSTEPNLQNIPVRMEIGRQI-------------- 640 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R + G + AD + IE R+LA ++ +D I A+ +DI+ T Sbjct: 641 -----------RKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITA 689 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P+D+V++ QR+ K + + Y Sbjct: 690 SQVFHVPLDEVTRTQRSNAKAVNFGIIY 717 >gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] Length = 866 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1] gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1] Length = 1022 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 41/79 (51%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA G+ L+ AD + IE R++A +G+D +AF G DI+ T A+ +D Sbjct: 773 LIRQAFIAPKGRVLLAADYSQIELRLMAHFSGDDNLTRAFNEGLDIHSATAAEVLGKSVD 832 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ +R K + L Y Sbjct: 833 DVTPTERRNAKAINFGLLY 851 >gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4] gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4] Length = 793 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE RVLA +A KAF G DI+ T ++ F TPI+ Sbjct: 550 IRQAFVAEKGMKLISADYSQIELRVLAHMADIPQLKKAFEEGLDIHAMTASEMFGTPIEG 609 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + R K + + Y G F +A+ G+ + S +K+ Sbjct: 610 MDPMVRRQAKAINFGIIY--GISAFG-LAAQLGISRGEASDYIKT 651 >gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470] gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470] Length = 858 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +RS + G + +D + +E RVLA ++G++ I+AF N EDI+ T A+ P + Sbjct: 618 IRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRTAAEVLGIPFE 677 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ EQR+ K + + Y Sbjct: 678 EVTSEQRSHAKAVNFGIIY 696 >gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] Length = 980 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GKKL+ AD + IE RVLA +A +AFA+G DI+ T ++ F PI+ Sbjct: 737 IRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFADGLDIHAMTASEMFGVPIEG 796 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + R K + + Y G F +A+ G+ Sbjct: 797 MDPMVRRRAKAINFGIIY--GISAF-GLANQLGI 827 >gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] Length = 920 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I +G AD + IE R++A ++G++ ++AF G DI+ T AK ++ I+K Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFREGHDIHRATAAKIWHEDIEK 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 741 VTDAQRKKAKQANFGIIY 758 >gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 656 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 104/463 (22%), Positives = 179/463 (38%), Gaps = 94/463 (20%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPSKRWICTS 97 ++P LW ++S S V+C+AHN FE + L+K+ + + P I + Sbjct: 76 EDPDALWAFLKESIFES--------HDVICIAHNLSFEAMFLYKQGIVVQEPCYDTIAAA 127 Query: 98 VLARTN-----GL-PSSLKNACLAL------NFSE-----HLTKMEEGKALIARFCKGSI 140 L + GL S LK +L +FS H +M + R Sbjct: 128 QLTMKSKWEFRGLHDSGLKLLATSLFGADMPSFSSVTDGRHFDEMNPQEYETVR------ 181 Query: 141 DSPPYDCTRANHVQA-WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 Y C +++ + F + R + A R + ++L E ++ + G Sbjct: 182 ----YACADSDYTLCLYYKFNNWFDRFLPAHRIITEQL------ESPTAVMVGCMKYNGI 231 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGI-IRSSRQTYALRMYLFLITGIDLVDMSE 258 +D +L+ Q + L +I +LT G+ I ++ T A + YL+ G+ ++ +E Sbjct: 232 PVDRKAMLEKQTEAVAKVDALKAEINELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTE 291 Query: 259 GTLKSI------LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV---------SSDG 303 ++ L Q +L+ RL + K L S+ G Sbjct: 292 KNQEAADDAAMQLLEEYCAQHRPELV--RLFQAVQEYRKWGKLKSTYIDGYLDHVNSATG 349 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ L G + TGRW+ QN PR+ DP+G Sbjct: 350 RIHPDLMPLG-TDTGRWAARNPNMQNAPRKTN-------------------DPIG----- 384 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--- 420 +R+ I+A G+ ++ D + IE RV A+ + ++ + +G DI+ T + F P Sbjct: 385 IRNFIVAPPGQIIMSLDFSQIELRVGAFYCRDPKMLETYRSGGDIHAQTTSVVFGVPFEV 444 Query: 421 -IDKVS---KEQRAIGKVMELALGYQGGAKVF-KTMASHCGLD 458 +DK + KE R I K + Y + KT+ GLD Sbjct: 445 AVDKNAPNYKEHRTIAKNCNFGVFYGLFPRGLQKTLRFKAGLD 487 >gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] Length = 905 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 77/184 (41%), Gaps = 35/184 (19%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 LS++VS D R+ T A+ TGR S QN+P I T Sbjct: 620 LSKSVSPDTRIHTTYNQMIAA-TGRLSSVDPNLQNIP-------IRT------------- 658 Query: 355 DPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 L +R IA G + L+ AD + IE R++A ++ + I+AF +GED++ T Sbjct: 659 ----LEGQQIRKAFIAGPGYESLMTADYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVA 714 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 AK F+ V E R K M L Y G F GL Q + ++ E Sbjct: 715 AKVFDVEATAVEPEHRRRIKAMSYGLAY--GLSAF-------GLSQQLGIETGEAAKMME 765 Query: 474 DWEQ 477 D+ Q Sbjct: 766 DYFQ 769 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T A+ N + Sbjct: 664 IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSE 723 Query: 424 VSKEQRAIGKVMELALGY 441 V+KEQR + K + + Y Sbjct: 724 VTKEQRRLAKTVNFGVIY 741 >gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843] gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843] Length = 956 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 63/281 (22%), Positives = 113/281 (40%), Gaps = 73/281 (25%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I NG LV AD + IE R+LA ++ E ++A+ + +D++ T F+ + Sbjct: 703 IRQAFIPENGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--RE 760 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 ++ E+R++GK + + Y GA Q+F++ K T E Sbjct: 761 ITPEERSLGKTINFGVIYGMGA--------------QKFARESKLT--------VEQGRK 798 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 +++ + +A ++ + +K Q + T+G+ + + RR Sbjct: 799 FIEKYHQRYA----------QVFEYLENSKKQAI-------TQGYVETI-----LGRRRY 836 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 N +++R R L D+ D LN +QL+R +Q Sbjct: 837 FNFDNPLLKR-----------LRGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQ 879 Query: 604 AISRDI-------LCEGMKNATKNGYDIVLTVHDEIVSETP 637 S DI L E ++N ++L VHDE+V E P Sbjct: 880 GSSADIIKVAMVKLAEVLQNYRAR---LLLQVHDELVLEVP 917 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ D + I+ RVLA ++ + I+AF + +DI+ T A+ N K Sbjct: 664 IRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDIHTATAARLLNVSPSK 723 Query: 424 VSKEQRAIGKVMELALGY 441 V+KEQR + K + + Y Sbjct: 724 VTKEQRRLAKTVNFGVIY 741 >gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] Length = 872 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A K+L+ D + IE RVLA I+ ++ I A+ G+DI+ T A+ F + Sbjct: 630 IRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEVFGLEASE 689 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + + Y Sbjct: 690 VSYQQRRRAKAINFGIAY 707 >gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14] gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14] Length = 920 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I G AD + IE R++A ++G++ I+AF G DI+ T AK ++ IDK Sbjct: 681 IRKCFIPEPGCLFFSADYSQIELRIMAHLSGDENMIEAFREGFDIHRATAAKIWHEEIDK 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 741 VTDSQRKKAKQANFGIIY 758 >gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101] gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101] Length = 866 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124] gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124] Length = 866 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] Length = 964 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G L+ AD + IE R+LA I +AF +G DI+ T ++ F P++ Sbjct: 721 IRQAFIASPGHVLISADYSQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEG 780 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ G+D + +K+ Sbjct: 781 MPSETRRRAKAINFGIIY--GISAFG-LAAQLGIDQGEAGAYIKT 822 >gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] Length = 921 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I N L AD + IE R++A ++G+ I+AF +G DI+ T AK + P++ Sbjct: 681 IRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 KV+ + R K + Y G VF +A G+ Sbjct: 741 KVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I N L AD + IE R++A ++G+ I+AF +G DI+ T AK + P++ Sbjct: 681 IRKAFIPDNADCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 KV+ + R K + Y G VF +A G+ Sbjct: 741 KVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772 >gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] Length = 866 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T A+ N + Sbjct: 664 IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSE 723 Query: 424 VSKEQRAIGKVMELALGY 441 V+KEQR + K + + Y Sbjct: 724 VTKEQRRLAKTVNFGVIY 741 >gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] Length = 866 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] Length = 1003 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 5/141 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T ++ F PI Sbjct: 760 IRRAFIAAKGHKLVSADYSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKD 819 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 + E R K + + Y G F +A+ G+ ++ +K FE + ++ Sbjct: 820 MPGEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK--KYFERFPGIRAYMD 874 Query: 484 WMQDQYPEFAVKDKLIGTACE 504 +D E L G C Sbjct: 875 ATRDFCREHGYVTTLFGRKCH 895 >gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] Length = 866 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239] gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239] Length = 866 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKSVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T A+ N + Sbjct: 664 IRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATAARLLNILPSE 723 Query: 424 VSKEQRAIGKVMELALGY 441 V+KEQR + K + + Y Sbjct: 724 VTKEQRRLAKTVNFGVIY 741 >gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] Length = 1024 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R+LA IA +AFA G DI+ T + F P+D+ Sbjct: 781 IRQAFVADEGHKLISADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQ 840 Query: 424 VSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 841 MTPDLRRRAKTINFGIIY 858 >gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLES 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTAEQRRSAKAINFGLIY 766 >gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] Length = 883 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 45/186 (24%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA + + I AF N EDI+ T A N P+++V+KEQR K + Sbjct: 660 ADYSQIELRLLAHFSEDPTLISAFENNEDIHTHTAATVLNIPLEQVTKEQRRQAKAVNFG 719 Query: 439 LGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA-------------------- 478 + Y G + + ++ G+ L++ S +K + F+ +++ Sbjct: 720 ILY--GQQAW-GLSKELGISLEEASAFIK--TYFQRYQRVKDFVESCKEKTRKTGRAMTI 774 Query: 479 ----------ESHHLWMQDQYPEFAVKDKLIGTACELVKKA--------WRAKHQG--VL 518 +S + ++ AV L GTA +L+KKA R +H G +L Sbjct: 775 IGRERPIPEIDSKNPQIRGAAERLAVNTPLQGTAADLIKKAMIVIDEKLMRGQHLGFMIL 834 Query: 519 QLWKDL 524 Q+ +L Sbjct: 835 QIHDEL 840 >gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1] Length = 833 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 82/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%) Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205 GE+ + E + LF+ L P LS E+ LWL + + RG R+D+ L Sbjct: 398 GEFTEDAAERALLSERLFQNLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + L + +E ++L+ +I +L +SR L LF G+ V +E T K Sbjct: 456 LEALSFELEKEMERLEGEIFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513 Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 + + L +LIL S L+ L V GRL A+ TG Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + PLG +R +A G L+ Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA ++G++ + F G+DI+ T A F V + R K + Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668 Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461 + Y A ++ G+D ++ Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688 >gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3] Length = 925 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IAS G L+ AD + IE RVLA A +AFA G+DI+ T A+ F ++ Sbjct: 682 IRTAFIASKGYLLLSADYSQIELRVLAHFADITALKEAFAQGQDIHAMTAAQMFGVAVEG 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +S E R K + + Y G F +A+ G+ ++ S ++ Sbjct: 742 MSSEIRRRAKAINFGIIY--GISPF-GLANQLGISRKEASHYIQ 782 >gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026] gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli UMN026] gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] Length = 928 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 689 IRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLET 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 749 VTSEQRRSAKAINFGLIY 766 >gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] Length = 878 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 25/126 (19%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R E S +I I P G D + SC Sbjct: 615 TGRLSSTDPNLQNIPARTEESRQI-----------RRIFVP-GAGYDLLMSC-------- 654 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 D + +E R+LA IA ++ ++AF +G+DI+ T A+ F P+D+V+ + R+ K + Sbjct: 655 ----DYSQVELRILACIAQDELLLEAFRHGQDIHARTAAEVFGVPLDEVTPQMRSRAKAV 710 Query: 436 ELALGY 441 + Y Sbjct: 711 NFGIVY 716 >gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T ++ F PI Sbjct: 780 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPIKG 839 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ ++ S +K Sbjct: 840 MPSEIRRRAKAINFGIIY--GISAF-GLANQLGIAREEASAYIK 880 >gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 997 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I +LV AD + IE RVLA +A +AFA+G DI+ T ++ FN P++ Sbjct: 754 IRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNVPVEG 813 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 814 MPSEVRRRAKAINFGIIY 831 >gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 921 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] Length = 894 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I+ G + + AD + IE RVLA IA +D I AF +DI+ T ++ F P+++ Sbjct: 655 LRKVFISKEGHEFIDADYSQIELRVLAHIAKDDNLIDAFIKNQDIHTRTASEIFEVPMEE 714 Query: 424 VSKEQRAIGKVMELALGY 441 V+ R K + + Y Sbjct: 715 VTSLMRGDAKAVNFGIVY 732 >gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 922 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF + D++ T A+ F ++ Sbjct: 683 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYAFRHNLDVHRATAAEVFGVELEA 742 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ +QR K + L Y G F +A G+D +Q Sbjct: 743 VTLDQRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 777 >gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091] Length = 921 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|37626128|gb|AAQ96504.1| hypothetical protein [Vibrio phage VP16T] Length = 62 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 614 MKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673 MK NGY +V+ HDE+++E P+ + SV + +LMT+ W P++A G++ RY Sbjct: 1 MKKCENNGYPVVMHTHDELIAEVPED-FGSVEEMAALMTEREPWRAWWPIRAAGWQDDRY 59 Query: 674 RK 675 +K Sbjct: 60 QK 61 >gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] Length = 933 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 25/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + GA+ TGR + QN+P R+EE Sbjct: 657 GRVHTSYSITGAN-TGRLASTDPNLQNIPV--RTEE----------------------GR 691 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA G LV D + IE R+LA IA +AFA+G DI+ T ++ F+ P+D Sbjct: 692 RIRGAFIAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLD 751 Query: 423 KVSKEQRAIGKVMELALGY 441 +++ E R K + + Y Sbjct: 752 EMTPEIRRQAKAINFGVIY 770 >gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614] gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614] Length = 996 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F TPI+ Sbjct: 753 IRKAFIAEKGHKLISADYSQIELRVLAHMADIPQLKKAFDDGLDIHAMTASEMFGTPIEG 812 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + R K + + Y G F +A+ G+ + +K+ Sbjct: 813 MDPMVRRRAKAINFGIIY--GISAFG-LANQLGISRGEAGDYIKT 854 >gi|9630428|ref|NP_046860.1| DNA polymerase [Mycobacterium phage D29] gi|6015018|sp|O64235|DPOL_BPMD2 RecName: Full=DNA polymerase gi|3172292|gb|AAC18485.1| DNA polymerase [Mycobacterium phage D29] Length = 607 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 360 ASD-CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 ASD VR C +A G + D E RVLA ++G+ I+AF +G D+++ T AF Sbjct: 374 ASDWTVRRCFLADPGHVMASIDYQAQELRVLAALSGDRTMIQAFKDGADLHLMTARAAFG 433 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 I K E R K + Y GGA T+A G+ ++ Q V Sbjct: 434 DHITKDDPE-RKYAKTVNFGRVYGGGA---NTVAEQTGISIETAKQVV 477 >gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13] gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40] gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] Length = 921 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 2/118 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G +LV AD + IE R+LA ++ E IK + ED++ T F+ D+ Sbjct: 665 IRQAFLPKEGWQLVAADYSQIELRILAHLSEEPILIKTYREDEDVHRLTATLLFDKDKDE 724 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ--NVKSTSTFEDWEQAE 479 ++ E+R + KV+ + Y GA F LD + F N + + FE +Q + Sbjct: 725 ITVEERRMAKVINFGVIYGMGAARFAREMDIHRLDAKTFIDRFNQRYPNVFEYLQQMQ 782 >gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] Length = 925 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F ++ Sbjct: 686 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 745 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 746 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 780 >gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 921 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 3/98 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F ++ Sbjct: 682 IRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFGVELEN 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 V+ + R K + L Y G F +A G+D +Q Sbjct: 742 VTTDMRRSAKAINFGLIY--GMSAFG-LAKQIGVDRKQ 776 >gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836] gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836] Length = 901 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%) Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRS---------CIIASNGKKLVVADL 381 PR R QTI A R + DP L + +R+ ++ + L+ AD Sbjct: 621 PRDARIHTTFNQTIAATGRLSS-TDP-NLQNIPIRTEEGRRIREAFVVGEGYESLMSADY 678 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A ++ ++ I AF +GED + T A+ F+ +V++E RA K M L Y Sbjct: 679 SQIEMRIMAHVSEDEGLIDAFNSGEDFHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAY 738 >gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54] Length = 948 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 82/316 (25%), Positives = 132/316 (41%), Gaps = 51/316 (16%) Query: 160 GEYCKRDVEATRELFKRLIP---LSDGERDLWLLDQ-------TINDRGYRIDLDLVLKL 209 G Y D + T +L + L P G ++LL+ TI G ++D + + Sbjct: 517 GHYAAEDADFTLQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQ 576 Query: 210 QELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 + QE +L++ +L + S +Q L LF + +V + G S Sbjct: 577 SHKLGQEMLQLEQKAYELAGQPFNLNSPKQ---LGEILFGRMQLPVVRKTAGGAPST-DE 632 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWS 321 +++LA+D L ++ + KL + L ++ D GR+ T A TGR + Sbjct: 633 EVLSKLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVH-THYSQAAVITGRLA 691 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P R+E A VR IA G L+ AD Sbjct: 692 SSDPNLQNIPV--RTE----------------------AGRRVREAFIAEQGL-LLSADY 726 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A ++ + +AFA GEDI+ T ++ F + VS EQR K + L Y Sbjct: 727 SQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAINFGLIY 786 Query: 442 QGGAKVFKTMASHCGL 457 G VF +AS+ G+ Sbjct: 787 --GMGVFG-LASNLGI 799 >gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila] Length = 893 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + G + TGR S QNLP +SEE Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654 Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I+ + +V AD + IE R+LA ++G++ +KAF G D++ T ++ FN Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLTASRIFNVKP 714 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V++E R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73] gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans] Length = 922 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+KL+ D + IE R++A ++ + ++AF+ G D++ T A+ F +++ Sbjct: 683 IRRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGVDVHRATAAEVFGRTLEQ 742 Query: 424 VSKEQRAIGKVMELALGY 441 VS +R K + L Y Sbjct: 743 VSANERRAAKAINFGLMY 760 >gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] Length = 916 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 66/296 (22%), Positives = 118/296 (39%), Gaps = 42/296 (14%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN-----------DRGYRIDLDLVLKLQ 210 Y D + T L + L P + + L ++ +TI G ID D++ K Sbjct: 484 YAAEDADITLRLHQMLWPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQS 543 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 I + +L+++ +L S L++ LF + ++ + S + + Sbjct: 544 FEIGKRLDELEKEAHELAGEAFNLSSPK-QLQVILFEKHELPVIKKTPKGAPST-AEEVL 601 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA D L +L + KL + L V++D + T + TGR S Sbjct: 602 QELAHDYPLPKLIIEHRGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTDP 661 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R+EE +R +A+ G K+ AD + IE Sbjct: 662 NLQNIPI--RTEE----------------------GRKIRQAFVAAKGYKIAAADYSQIE 697 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A ++ + + AFA G D++ T A+ F + +V+ + R K + L Y Sbjct: 698 LRIMAHLSQDKGLLNAFAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIY 753 >gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] Length = 913 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE R++A ++ + +KAF G+D++ T ++ F+ + Sbjct: 674 IREAFIAPAGCYIVSADYSQIELRIMAHLSDDPGLLKAFREGQDVHKATASEIFDIAPLE 733 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ EQR KV+ L Y G F +AS+ G+ Sbjct: 734 VTPEQRRYAKVINFGLIY--GMSAF-GVASNLGI 764 >gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2] gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2] Length = 893 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + G + TGR S QNLP +SEE Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654 Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I+ + +V AD + IE R+LA ++G++ +KAF G D++ T ++ FN Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLKAFEEGIDVHTLTASRIFNVKP 714 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V++E R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 122/301 (40%), Gaps = 45/301 (14%) Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D +AT L ++L+P L + E L + + G +DL + +L Sbjct: 458 YAAEDADATWLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGN 517 Query: 212 LIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 Q ++L++ I++L G + S +Q L LF G+ ++G + Sbjct: 518 GFGQRMQELEKRIIELAGGPFNLNSPKQ---LEEVLFERLGLQAGKKTKGKTGRSTDNEV 574 Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 +T LA++ + +L + KL + L++ GR+ + + TGR S Sbjct: 575 LTGLAEEHEIAKLLLDYRGLTKLKSTYTDALAKLTDRQGRVHTSYN-QAVTATGRLSSSD 633 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P R++E +R IA G ++ AD + I Sbjct: 634 PNLQNIPI--RTDE----------------------GRRIREAFIAPPGCVILAADYSQI 669 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA ++ + AF+ EDI+ T ++ F + V+ E R K + + Y G Sbjct: 670 ELRVLAHLSQDPVFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQG 729 Query: 445 A 445 A Sbjct: 730 A 730 >gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] Length = 982 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382 P ER QT+ A R ++ DP A +RS + G + L+ D + Sbjct: 702 PADERIHTTFEQTVAATGRLSSV-DPNLQNIPNRNAAGREIRSAFVPGEGFESLMSCDYS 760 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +E R++A ++G++ I+AF +G D + + P+D+++ +QR+ K M L Y Sbjct: 761 QVELRIMAHLSGDESLIEAFKSGADFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAY 819 >gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31] gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31] Length = 973 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ GK L+ AD + IE R+LA I KAF G DI+ T ++ FN PI+ Sbjct: 730 IRKAFVAAPGKVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMTASEMFNVPIEG 789 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 790 MPSEVRRRAKAINFGIVY 807 >gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13] gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13] Length = 866 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKAVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] Length = 640 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 89/416 (21%), Positives = 166/416 (39%), Gaps = 49/416 (11%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPSKRWICTSVLARTNG---- 104 Q+A+ L + V+ VAHN FE + L+ + + + P I S L + Sbjct: 77 QAAIWDYLKLLFESKDVIKVAHNLAFESMFLYARGIVLQKPCYDTIAASQLTLKSKWEFR 136 Query: 105 --LPSSLKNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCTRANH-VQAWQLF 159 S LK AL +E + + EG+ + Y C +++ ++ + +F Sbjct: 137 SLADSGLKTLAPALCKAEMTEFSTVTEGR-FFDELNPQDEKTVRYACADSDYTLRLYHVF 195 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 ++ R + R + + + E + + G +D +LK Q A++ Sbjct: 196 NQWFDRFLPKHRTIVEEV------ESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIVS 249 Query: 220 LDEDIVKLTDGI-IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 + ++I + + I ++ T A + YLF VD+ +K+ H ++ Sbjct: 250 IRKEIAGIIGNVEIGANASTSAFKKYLF-------VDLGLPVMKTTAKHQEAADDETMIL 302 Query: 279 LNR-LASSGSAILKLNTLSEAVSSDGRLR-----GTLQFYGASRTGRWSGCVFQPQNLPR 332 L A++ +++L L + G+L+ G L+F TGR P +P Sbjct: 303 LKEWCATNRPELVRLFELVQEYRKWGKLKSTYIDGYLRFIDED-TGR-----IHPDLMPL 356 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + ++ N + DP+G VR IIA GK L+ D + IE RV A+ Sbjct: 357 GTETGRFASRNPNMQNCPQKDNDPIG-----VRKFIIAPAGKVLLSLDFSQIELRVGAFY 411 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS-------KEQRAIGKVMELALGY 441 + ++ + G DI+ T + + P ++ + KE+R I K + Y Sbjct: 412 CRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFY 467 >gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] Length = 896 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 28/147 (19%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 S D R+ + G + TGR S QN+P + S IQ Sbjct: 623 SDDNRIHTSFLHTGTA-TGRLSSKNPNLQNIPTKSDS------NIQ-------------- 661 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I +G KLV D + IE R+LA + + ++AF N DI+ T K F Sbjct: 662 ----IRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVEAFENDLDIHYQTAVKIFG- 716 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAK 446 ++ +KE+R I K + L Y G+K Sbjct: 717 --EENAKEKRGIAKSINFGLLYGMGSK 741 >gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] Length = 866 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 26/151 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + +DG + T + TGR S QN+P + E EI Sbjct: 582 LKAVIDTDGSIHSTFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREIR------------- 627 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + I G L+ AD + IE RVLA I+G++ I AF + DI+ T Sbjct: 628 -----------KVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTA 676 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F P+++V+ R+ K + + Y G Sbjct: 677 SEVFKVPVEEVTPLMRSRAKAVNFGIVYGIG 707 >gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925] gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925] Length = 881 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 65/153 (42%), Gaps = 28/153 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + DG++ + + TGR S QN+P + E EI Sbjct: 597 LKHVIDEDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREI-------------- 641 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R + +N + ++ AD + IE RVLA IA ++ I AF + +DI+ T Sbjct: 642 -----------RKVFVPNNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTIT 690 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 ++ F ID+V+ R+ K + + Y GA Sbjct: 691 ASEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGA 723 >gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] Length = 961 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 27/144 (18%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357 V DGR+ L + TGR S QN+P R E + I Sbjct: 682 VKEDGRIHCKLNQL-VTATGRLSSTEPNLQNIPIRMELGKRI------------------ 722 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R + G V AD + IE R++A ++G++ IKA+ EDI+ T + F Sbjct: 723 -------RKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHRITASHVF 775 Query: 418 NTPIDKVSKEQRAIGKVMELALGY 441 P+D+V+ QR K + + Y Sbjct: 776 GVPLDEVTDLQRRNAKAVNFGIIY 799 >gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] Length = 875 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R C + G K + AD + IE R+LA ++ ++ + AF +G D + T ++ F P++ Sbjct: 635 IRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVE 694 Query: 423 KVSKEQRAIGKVMELALGY 441 VS E R+ K + + Y Sbjct: 695 DVSPELRSRAKAVNFGIVY 713 >gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] Length = 928 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKLV AD + IE R++A +A AFA+G DI+ T ++ F P+D Sbjct: 689 IRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRDAFAHGADIHAITASQVFGVPLDG 748 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + R K + + Y G F +A+ G+ Sbjct: 749 IDPALRRRAKAINFGIIY--GISAFG-LAAQLGI 779 >gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] Length = 926 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR A +G +V AD + IE R++A ++G+ AF N ED++ T A+ F +K Sbjct: 687 VRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAAFQNNEDVHRRTAAEVFGVAPEK 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS-----TSTFEDWEQA 478 ++ EQR K + L Y G +A G+D + +K T E ++ Sbjct: 747 ITLEQRRYAKTINFGLIYGMGE---YGLAKSLGIDNVSAAMFIKRYFARYTGVAEYMQRT 803 Query: 479 ESH-------------HLWMQDQYPEFAVK----------DKLIGTACELVKKA 509 + H L++ D + A+K + GTA +L+KKA Sbjct: 804 KEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGAERAAINAPMQGTASDLIKKA 857 >gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] Length = 927 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I G + AD + IE RV+A ++ + + AF G DI+ T AK ++ P+ + Sbjct: 688 IRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLDAFREGYDIHSATAAKIYDKPVSE 747 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V++++R K + Y G VF Sbjct: 748 VTRDERTKAKRANFGIIY--GITVF 770 >gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1] gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1] Length = 949 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%) Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382 PR R QT+ A R ++ DP A +RS + G + L+ +D + Sbjct: 669 PRDGRIHTTFEQTVAATGRLSSV-DPNLQNIPNRNAAGREIRSAFVPGEGYESLLSSDYS 727 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +E R++A ++G++ I+AF +G D + + + P+++++ +QR+ K M L Y Sbjct: 728 QVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 786 >gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653] gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S GR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 192 LIKTISPGGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 239 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ +D I+AF +GED++ T + Sbjct: 240 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVAS 287 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F +V E R K M L Y Sbjct: 288 QVFGVAKSEVDPEMRRKIKAMSYGLAY 314 >gi|94269757|ref|ZP_01291549.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93451091|gb|EAT02034.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 352 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 63/241 (26%), Positives = 102/241 (42%), Gaps = 51/241 (21%) Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +++SH N+++L + + KL TL + +DGR+ T + TGR S Sbjct: 49 AVISHRNLSKL-----------KSTYVDKLATLID--PADGRVHTTFN-QTVTATGRLSS 94 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P I P G +R+ +A+ + AD + Sbjct: 95 SNPNLQNIP---------------------IRTPEGRR---LRAAFVAAAEHLFLAADYS 130 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 I+ RVLA +G+ +AFA+ +DI+ T A+ F VS + R + K + + Y Sbjct: 131 QIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVY- 189 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--WEQAESHHLWMQDQYPEFAVKDKLIG 500 G F GL +Q + K TF D +E + H +MQ+ E A +D +G Sbjct: 190 -GMSAF-------GL-AEQLRCSRKEAQTFIDRYFELYQGVHRFMQE-IVEQARRDGWVG 239 Query: 501 T 501 T Sbjct: 240 T 240 >gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814] gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814] Length = 956 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 47/177 (26%), Positives = 76/177 (42%), Gaps = 29/177 (16%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E ++++ GR+ + GA +TGR S QN+P R+EE Sbjct: 667 DALGECINAETGRVHTSFNLVGA-QTGRLSSSDPNLQNIPI--RTEE------------- 710 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R+ +A G L+ AD + IE R+LA I D AF N DI+ Sbjct: 711 ---------GRKIRAAFVAQEGNVLIAADYSQIELRLLAHIGNIDTLKDAFNNDLDIHAM 761 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 T ++ F PI+ + R K + + Y G F +A G+ + S+ +K+ Sbjct: 762 TASEMFGVPIEGMDPMIRRKAKAINFGIIY--GISAFG-LARQLGIPRGEASEYIKA 815 >gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] Length = 933 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G LV D + IE R+LA IA +AFA+G DI+ T ++ F+ P+D+ Sbjct: 693 IREAFVAEPGNVLVSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLDE 752 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 753 MTPEIRRKAKAINFGVIY 770 >gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255] gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255] Length = 932 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 25/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + GAS TGR S QN+P RSE A Sbjct: 656 GRVHTSYVISGAS-TGRLSSTDPNLQNIPI--RSE----------------------AGR 690 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA G L+ D + IE R+LA IA D +AF G+DI+ T ++ FN P++ Sbjct: 691 KIREAFIAEEGNVLLSLDYSQIELRILAHIAKIDTLKQAFHEGQDIHALTASQMFNVPLE 750 Query: 423 KVSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 751 NMDPMVRRQAKAINFGVIY 769 >gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 908 Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 623 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 670 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T A Sbjct: 671 ------------FVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAA 718 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 719 QVFAVERSAVDAEMRRKIKAMSYGLAY 745 >gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117] gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117] Length = 870 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L +A DGR+ T A+ TGR S QN+P RSEE G Sbjct: 582 VDGLLKATHEDGRIHTTYAQTVAA-TGRLSSLNPNLQNIPV--RSEE-----------GR 627 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I D ++ + L+ D + IE R++A ++ ++ I+A+ NGED++ Sbjct: 628 RIRD----------VFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLIEAYQNGEDLHRY 677 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ FN ++V+ E R+ K M L Y Sbjct: 678 VGSRVFNVEPEEVTSEMRSKVKAMSYGLAY 707 >gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010] gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010] Length = 944 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 29/153 (18%) Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 + +L +AV+ DGR+ T + A+ TGR S QN+P R EI Sbjct: 655 VQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGREI---------- 703 Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 RS + G + L+ +D + +E R++A ++G+D I+AF +G D Sbjct: 704 ---------------RSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADF 748 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + + + P+D ++ +QR K M L Y Sbjct: 749 HKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 781 >gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] Length = 950 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 9/119 (7%) Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNG-KKLVVADLA 382 PR R QT+ A R ++ DP A +RS + G + L+ +D + Sbjct: 670 PRDGRIHTTFEQTVAATGRLSSV-DPNLQNIPNRNAAGREIRSAFVPGEGYESLLSSDYS 728 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +E R++A ++G++ I+AF +G D + + + P+++++ +QR+ K M L Y Sbjct: 729 QVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 787 >gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] Length = 904 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 65/155 (41%), Gaps = 25/155 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V+++GR+ A+ TGR S QN+P + Sbjct: 618 LEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPNLQNIPIR------------------ 658 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 G +R+C A G +L AD + +E RVLA +G+ + AF + EDI+ Sbjct: 659 ------GDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHDEDIHSR 712 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 T A F+ V+ ++R K + L Y G + Sbjct: 713 TAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQ 747 >gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8] Length = 956 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 662 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 704 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 705 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 756 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 757 AAEIMGKDISEVTPSERRAAKAVNFGLLY 785 >gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8] gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8] Length = 905 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 4/94 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G L+ AD + IE R++A ++ + +AF GEDI+ T ++ F ++ Sbjct: 667 VREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQRAFEAGEDIHRATASEVFGVSLED 725 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS EQR K + L Y G VF +AS+ G+ Sbjct: 726 VSTEQRRAAKAINFGLIY--GMGVFG-LASNLGI 756 >gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17] gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17] Length = 943 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 29/153 (18%) Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 + +L +AV+ DGR+ T + A+ TGR S QN+P R EI Sbjct: 654 VQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGREI---------- 702 Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 RS + G + L+ +D + +E R++A ++G+D I+AF +G D Sbjct: 703 ---------------RSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADF 747 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + + + P+D ++ +QR K M L Y Sbjct: 748 HKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 780 >gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2] Length = 833 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 81/323 (25%), Positives = 129/323 (39%), Gaps = 53/323 (16%) Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205 GE+ + E + LF+ L P LS E+ LWL + + RG R+D+ L Sbjct: 398 GEFTEDAAERALLSERLFQTLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + L + +E ++L+ ++ +L +SR L LF G+ V +E T K Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513 Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 + + L +LIL S L+ L V GRL A+ TG Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + PLG +R +A G L+ Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA ++G++ + F G+DI+ T A F V ++ R K + Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKMRRAAKTVNFG 668 Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461 + Y A ++ G+D ++ Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688 >gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169] Length = 956 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 662 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 704 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 705 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 756 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 757 AAEIMGKDISEVTPSERRAAKAVNFGLLY 785 >gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 861 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 LS+ V DG++ T+ ++TGR S QN+ R E +EI Sbjct: 578 LSKHVLKDGKIH-TIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEI-------------- 622 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R +AS G L+ AD + IE R+LA +A E+ I AF +G DI+ T Sbjct: 623 -----------RKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTA 671 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ D V R K + + Y Sbjct: 672 MQIFDVEHDAVDANMRRSAKTVNFGIVY 699 >gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] Length = 867 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 106/424 (25%), Positives = 161/424 (37%), Gaps = 93/424 (21%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS----KRWICTSVLARTNG 104 E + L YL+DET KK G DI S RW + T Sbjct: 344 ENALKDESFLAYLKDET---------------KKKYGYDIKSAVIGSRWNGVEINGYTFD 388 Query: 105 LP-----------SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 L LK C ++ + + EE F KG+ P D A H Sbjct: 389 LSLASYVLEPAIKEELKYVCTHFDY-DGVQYDEE------VFGKGAKKHIPDDALLAQHT 441 Query: 154 QAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + Y +DV T+EL K+ D E + + + G IDLD++ ++ E Sbjct: 442 VS-KAKAIYELKDV-VTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVLKEMDE 499 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTY------ALRMYLFLITGIDL-------VDMSE 258 DE I KL++ I R S T+ L LF G+ S+ Sbjct: 500 -------AFDETIEKLSNDIYRISGTTFNISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQ 552 Query: 259 GTLKSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 L+ I+ +H + + + +L +L+S+ L L E V D ++ T+ + T Sbjct: 553 DVLEKIIDAHPVVPLVLEYRMLTKLSST-----YLKGLQEQVFPDNKIH-TIYKQTLTHT 606 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P RSEE +R ++ NG LV Sbjct: 607 GRLSSVDPNLQNIPV--RSEE----------------------GKLIRKAFVSHNGY-LV 641 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE R+LA +A I AF G+DI+ T A F ++V+ + R+ K + Sbjct: 642 SFDYSQIELRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNF 701 Query: 438 ALGY 441 + Y Sbjct: 702 GIIY 705 >gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] Length = 871 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L+ + DGR+ + TGR S QN+P Sbjct: 586 DGLANYIREDGRIHSKFN-QTITATGRLSSTEPNLQNIP--------------------- 623 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I LG +R I +G V AD + IE RVLA +G+ I+A+ +DI+ T Sbjct: 624 IRVELG---RLIRKVFIPEDGFVFVDADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRIT 680 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P D+V+ +QR K + + Y Sbjct: 681 ASQVFHIPFDEVTDQQRRNAKAVNFGIVY 709 >gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca] Length = 750 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 30/159 (18%) Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 ++ L E V SD GR+ + TGR S QN+P R E S +I Sbjct: 463 VDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRTEFSRQI---------- 511 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 R I +G LV AD + IE R+LA ++ E I+A+ +D++ Sbjct: 512 ---------------RKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTNQDVH 556 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 T F+ D ++ E+R +GK++ + Y GA+ F Sbjct: 557 SLTAKLLFDR--DGITPEERRLGKIINFGVIYGMGAQRF 593 >gi|61676024|gb|AAX51677.1| DNA polymerase I [Thermocrinis ruber DSM 12173] Length = 169 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 46/96 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A G V+AD + IE R+ A GE IKAF G D++ T + + Sbjct: 11 LRRIFKAEEGNLFVIADFSQIELRIAAEYVGEIRMIKAFQEGRDLHRYTASILLGKREED 70 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 ++KE+R + K + L Y AK A+ G+DL Sbjct: 71 ITKEERQLAKAVNFGLIYGISAKGLSQYAATYGIDL 106 >gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25] gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25] Length = 929 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 45/83 (54%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G K++ AD + IE R++A ++ ++ + AF + D++ T A+ F + Sbjct: 690 IRQAFIAPKGYKMLAADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFKVELGD 749 Query: 424 VSKEQRAIGKVMELALGYQGGAK 446 V+ +QR K + L Y GA+ Sbjct: 750 VTSDQRRSAKAINFGLIYGMGAQ 772 >gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1] Length = 831 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 24/128 (18%) Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A+ TGR S QN+P + PLG +R +A G Sbjct: 567 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEG 602 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 LV D + IE RVLA ++G++ I+ F G+DI+ T + F P++ V R K Sbjct: 603 FLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAAK 662 Query: 434 VMELALGY 441 + + Y Sbjct: 663 TVNFGVLY 670 >gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88] gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88] Length = 882 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + DGR+ + + TGR S QN+P + E E Sbjct: 598 LKNVIDEDGRIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGRE--------------- 641 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 VR + + +++ AD + IE RVLA IA ++ I AF + DI+ T Sbjct: 642 ----------VRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHTKT 691 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PID+V+ R K + + Y G Sbjct: 692 ASEVFKVPIDEVTVNMRGNAKAVNFGIVYGIG 723 >gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2] gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2] Length = 940 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R++A ++ ++ AFA GEDI+ T A+ F + Sbjct: 702 IRQAFVADPGCKLISADYSQIELRIMAHLSEDERLCAAFAAGEDIHRATAAEVFGVKEVE 761 Query: 424 VSKEQRAIGKVMELALGY 441 VS QR K + L Y Sbjct: 762 VSDNQRRAAKAINFGLIY 779 >gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse] gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse] Length = 968 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G L+ AD + IE R+LA IA +AFA G+DI+ T ++ F I+ Sbjct: 725 IRTAFIAPKGHMLLSADYSQIELRILAHIADIIALKEAFAQGQDIHAITASQMFGVAIEG 784 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A+ GL Q+ S ++ Sbjct: 785 MNSDIRRRAKAINFGIIY--GISAF-GLANQLGLSRQEASHYIQ 825 >gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46] gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46] Length = 881 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/149 (29%), Positives = 64/149 (42%), Gaps = 28/149 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L +AV+ DGR+ T A+ TGR S QN+P R E I Sbjct: 596 LIKAVADDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRTEFGRRI-------------- 640 Query: 354 ADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R + G +L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 641 -----------REAFVVGEGYAQLITADYSQIEMRVMAHLSQDPGLIEAYRQGEDLHNYV 689 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +K F ID+V+ E R K M L Y Sbjct: 690 GSKVFGVGIDEVTPELRRRVKAMSYGLAY 718 >gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36] gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36] Length = 931 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G K V D + IE R++A ++ + + AF+ G+DI+ T A+ F+ +D Sbjct: 691 IRQAFIPETGYKYVAVDYSQIELRIMAHLSQDKGLLTAFSEGKDIHRATAAEVFSVELDD 750 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 751 VTSDQRRSAKAINFGLIY 768 >gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1] gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1] Length = 908 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA +V AD + IE R++A ++ + +++FA GED++ T A+ F + Sbjct: 669 IRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEGEDVHRATAAEIFGMTPGE 728 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ EQR KV+ L Y A +A + GL+ Sbjct: 729 VTSEQRRYAKVINFGLIYGMSA---HGLAKNLGLE 760 >gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] Length = 939 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 65/275 (23%), Positives = 112/275 (40%), Gaps = 54/275 (19%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYAL 241 E+ L + ++ + G +ID +++ KL + E + L++ I K+ + I S +Q + Sbjct: 536 EKPLIKILSSVENNGIKIDKNILEKLSKKFEIEIQNLEKKIFKIAKEEFNIGSPKQLGDV 595 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--------- 292 I G S+ T K + T +A +L LAS G KL Sbjct: 596 IYEKLKIAG------SKKTKKGNFA----TNVA---VLEDLASQGHEFPKLVLNWRQKSK 642 Query: 293 ------NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 +TL +++ + T A+ TGR + QN+P I+ Sbjct: 643 LKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQNIP------------IKN 690 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + E +RS ++ KL+ AD + IE R+LA + KAF N E Sbjct: 691 IEGKE------------IRSAFVSDKNSKLISADYSQIEMRILAHMGDVKELKKAFLNKE 738 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ T ++ F+ + KV ++ R K + + Y Sbjct: 739 DIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIY 773 >gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1] Length = 959 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788 >gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] Length = 979 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A G L+ AD + IE R+LA IA + KAFA G DI+ T ++ F PI+ Sbjct: 736 IRTAFVAEKGNLLISADYSQIELRLLAHIADIEALKKAFAEGLDIHAMTASEMFGVPIEG 795 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 + R K + + Y G F +A+ G+ Q+ + + Sbjct: 796 MESSVRRRAKAINFGIIY--GISAF-GLANQLGIPRQEAGEYI 835 >gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 956 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 662 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 704 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 705 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 756 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 757 AAEIMGKDISEVTPSERRAAKAVNFGLLY 785 >gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E] Length = 959 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788 >gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1] Length = 959 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788 >gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4] gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4] Length = 959 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788 >gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1] Length = 959 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788 >gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis] Length = 833 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%) Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205 GE+ + E + LF+ L P LS E+ LWL + + RG R+D+ L Sbjct: 398 GEFTEDAAERALLSERLFQNLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + L + +E ++L+ ++ +L +SR L LF G+ V +E T K Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513 Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 + + L +LIL S L+ L V GRL A+ TG Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + PLG +R +A G L+ Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA ++G++ + F G+DI+ T A F V + R K + Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668 Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461 + Y A ++ G+D ++ Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688 >gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica] Length = 921 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 684 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 743 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 744 LTNEHRRKAKAINFGIIY 761 >gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 959 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL+ A GR+ T + TGR S QN+P I T T Sbjct: 665 DTLANAADEQGRVH-TSYHQALTSTGRLSSSDPNLQNIP-------IRTDT--------- 707 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G+ ++ AD + IE R++A +G++ I+AF + DI+ T Sbjct: 708 --------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRAFNHNLDIHTAT 759 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ I +V+ +R K + L Y Sbjct: 760 AAEIMGKDISEVTPSERRAAKAVNFGLLY 788 >gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] Length = 943 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 29/153 (18%) Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 + +L +AV+ DGR+ T + A+ TGR S QN+P R EI Sbjct: 654 VQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNRNAEGREI---------- 702 Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 RS + G + L+ +D + +E R++A ++G+D I+AF +G D Sbjct: 703 ---------------RSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGADF 747 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + + + P+D ++ +QR K M L Y Sbjct: 748 HKYVASLVYGIPVDDITPDQRTHVKAMSYGLAY 780 >gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2] Length = 833 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%) Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205 GE+ + E + LF+ L P LS E+ LWL + + RG R+D+ L Sbjct: 398 GEFTEDAAERALLSERLFQNLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + L + +E ++L+ ++ +L +SR L LF G+ V +E T K Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513 Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 + + L +LIL S L+ L V GRL A+ TG Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + PLG +R +A G L+ Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA ++G++ + F G+DI+ T A F V + R K + Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668 Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461 + Y A ++ G+D ++ Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688 >gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 907 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 622 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 669 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 670 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVAS 717 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 718 QVFGVERSAVDAEMRRKIKAMSYGLAY 744 >gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 627 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/273 (23%), Positives = 113/273 (41%), Gaps = 57/273 (20%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ T G + TGR S QN+P + Sbjct: 332 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIPVKTDD-- 383 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G+ +R +A GK L+ D + +E RVL ++ ++ Sbjct: 384 -------------------GIK---IREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENL 421 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + + VS+EQR I K++ ++ Y G AK K Sbjct: 422 IEAYREEKDLHDLTARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 481 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + ++FE E E H + ++ Q Sbjct: 482 DASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 541 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 AV + GTA E++KK K VL+ +D+T Sbjct: 542 AVNTVIQGTAAEVLKKVM-VKVYDVLKDKEDIT 573 >gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14] gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14] Length = 1014 Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 5/141 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T ++ F P+ Sbjct: 771 IRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVTG 830 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 + E R K + + Y G F +A+ G+ ++ +K FE + ++ Sbjct: 831 MPGEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGTYIK--KYFERFPGIRAYMD 885 Query: 484 WMQDQYPEFAVKDKLIGTACE 504 +D E + L G C Sbjct: 886 ATRDFCREHGYVETLFGRKCH 906 >gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI polymerase 1 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis] Length = 833 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%) Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205 GE+ + E + LF+ L P LS E+ LWL + + RG R+D+ L Sbjct: 398 GEFTEDAAERALLSERLFQNLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + L + +E ++L+ ++ +L +SR L LF G+ V +E T K Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LERVLFDELGLTPVGRTEKTGKRS 513 Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 + + L +LIL S L+ L V GRL A+ TG Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + PLG +R +A G L+ Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA ++G++ + F G+DI+ T A F V + R K + Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668 Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461 + Y A ++ G+D ++ Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688 >gi|218508767|ref|ZP_03506645.1| DNA polymerase I [Rhizobium etli Brasil 5] Length = 201 Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 49 IRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 108 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 109 MPGEVRRRAKAINFGIIY 126 >gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] Length = 871 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ + DGR+ G + TGR S QN+P R E L R Sbjct: 588 LATFIGPDGRIHGKFN-QTITATGRISSTEPNLQNIPVRME------------LGR---- 630 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G V AD + IE R+LA +G++ I+A+ DI+ T Sbjct: 631 ---------LIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTA 681 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P D+V+ QR K + + Y Sbjct: 682 SQVFHVPFDEVTDLQRRNAKAVNFGIVY 709 >gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC polymerase 1 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus] Length = 834 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 70/299 (23%), Positives = 118/299 (39%), Gaps = 69/299 (23%) Query: 171 RELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKL 220 R L KRL E+ LWL + + G R+D+ + L +A+E ++L Sbjct: 416 RNLLKRL---QGEEKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRL 472 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLI----------TG--------IDLVDMSEGTLK 262 +E++ +L + + R+ + TG ++ + + ++ Sbjct: 473 EEEVFRLAGHPFNLNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVE 532 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 IL H +T+L K+ ++ L S ++ NT GRL A+ TGR S Sbjct: 533 KILQHRELTKL-KNTYVDPLPS----LVHPNT--------GRLHTRFN-QTATATGRLSS 578 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + PLG +R +A G LV D + Sbjct: 579 SDPNLQNIP---------------------VRTPLG---QRIRRAFVAEAGWALVALDYS 614 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE RVLA ++G++ I+ F G+DI+ T + F P + V R K + + Y Sbjct: 615 QIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T ++ F PI Sbjct: 778 IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFQDGLDIHAMTASEMFGVPIKD 837 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ ++ +K Sbjct: 838 MPSEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK 878 >gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C] gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C] Length = 483 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 24/152 (15%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + + L +++++DGR+ + A+ TGR S QN+P + T +A+ R Sbjct: 193 VTVEGLVKSIAADGRVHTSFSQTTAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRR 244 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 G ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ Sbjct: 245 G----------------FVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLH 288 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F +V E R K M L Y Sbjct: 289 TTVASQVFGVERSQVDAEMRRKIKAMSYGLAY 320 >gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1] gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1] Length = 946 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 29/139 (20%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + GA +TGR S QN+P I T+ G TI Sbjct: 670 GRVHTSYSLVGA-QTGRLSSTDPNLQNIP-------IRTEI------GRTI--------- 706 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 R + +G L+ AD + IE R+ A +A D +AFANGEDI+ T + F Sbjct: 707 --REAFVPEDGNVLLAADYSQIELRLAAHMADVDTLKEAFANGEDIHARTATEMFG---- 760 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+++ RA K + A+ Y Sbjct: 761 EVTRDTRARAKTINFAILY 779 >gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] Length = 1033 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IAS G KLV AD + IE R+L+ +A KAF +G DI+ T ++ F P++ Sbjct: 790 IRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAFQDGIDIHAMTASEMFGVPVEG 849 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ ++ +K Sbjct: 850 MPSEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK 890 >gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] Length = 905 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 50/94 (53%), Gaps = 4/94 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G L+ AD + IE R++A ++ + AFA GEDI+ T A+ F + Sbjct: 667 VREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQSAFAAGEDIHRATAAEVFGVALAD 725 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS +QR K + L Y G VF +AS+ G+ Sbjct: 726 VSTDQRRAAKAINFGLIY--GMGVFG-LASNLGI 756 >gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 849 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 27/144 (18%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPL 357 ++ DGR+ T + TGR S QN+P R E L R Sbjct: 570 IAEDGRIHSTFN-QTITATGRISSTEPNLQNIPVRME------------LGR-------- 608 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F Sbjct: 609 -----LIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQDIHRHTASEVF 663 Query: 418 NTPIDKVSKEQRAIGKVMELALGY 441 + P D+V+ QR K + + Y Sbjct: 664 HVPFDEVTDLQRRNAKAVNFGIVY 687 >gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5] gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5] Length = 875 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H] gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H] Length = 936 Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 31/177 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA K+V D + IE R++A ++ + + AF+ G+DI+ T A+ F + + Sbjct: 696 IRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVTAFSEGKDIHRATAAEIFAVELGE 755 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ-------FSQNVKSTSTF-EDW 475 V+ +QR K + L Y G F +A + QQ + Q T+ ED Sbjct: 756 VTTDQRRSAKAINFGLIY--GMSAFG-LAKQLHIGRQQAQEYQDKYFQRYPGVLTYMEDT 812 Query: 476 EQAESHHLWMQDQY------PEF--------------AVKDKLIGTACELVKKAWRA 512 Q S +++ Y P+ A+ + GTA +++KKA A Sbjct: 813 RQQASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAINAPMQGTAADIIKKAMLA 869 >gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] Length = 861 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 63/148 (42%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 LS+ V DG++ T+ ++TGR S QN+ R E +EI Sbjct: 578 LSKHVLKDGKIH-TIFNQIQTQTGRLSSSEPNLQNISVRDEEGKEI-------------- 622 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R +AS G L+ AD + IE R+LA +A E+ I AF +G DI+ T Sbjct: 623 -----------RKAFVASEGHVLLSADYSQIELRMLAHMADEEVMIDAFNHGIDIHTKTA 671 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ D V R K + + Y Sbjct: 672 MQIFDVDHDSVDANMRRSAKTVNFGIVY 699 >gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis] Length = 875 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2] gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2] Length = 956 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKK+V D + IE R++A ++G+ AF G DI+ T A+ + +D+ Sbjct: 717 IRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTDAFEQGLDIHRATAAEVWGKTLDE 776 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS R K + L Y G F +A GL Sbjct: 777 VSDNDRRNAKAINFGLIY--GMSAF-GLAKQLGL 807 >gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] Length = 902 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 120/304 (39%), Gaps = 58/304 (19%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 Y D + T +L +L+PL + E++L + + +I++ LV L ++ E + + Sbjct: 471 YAAEDADVTLQLHHKLMPLIEKEKNLKKVFE-------QIEMPLVPILMQM---EMRGVL 520 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL---------------- 265 D L I + L + + G + S L++IL Sbjct: 521 VDTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ 580 Query: 266 --SHSNITQ-LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + N+ Q LA D L ++ ++ KL T L V R T + T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P R+EE +R IA G ++V Sbjct: 641 GRLSSNNPNLQNIPI--RTEE----------------------GRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E R++A I+ + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGY 441 L Y Sbjct: 737 GLLY 740 >gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1] Length = 880 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + TL ++V+ D R+ T + TGR S QN+P RSEE Sbjct: 592 VETLKKSVADDARIHTTYA-QNIAATGRISSNNPNLQNIPV--RSEE------------- 635 Query: 352 TIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VRS + S G + L+ AD + IE R++A ++G+ I+A+ +GED++ Sbjct: 636 ---------GRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHR 686 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ FN +V+ R+ K M L Y Sbjct: 687 FVGARIFNVEPAEVTSAMRSKVKAMSYGLAY 717 >gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali] Length = 875 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T ++ F P++ Sbjct: 738 IRKAFIAAPGHKLVSADYSQIELRLLAEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEG 797 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 798 MPGEVRRRAKAINFGIIY 815 >gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H] gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H] Length = 1861 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 87/447 (19%), Positives = 171/447 (38%), Gaps = 67/447 (14%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD--RTEQSAMPSDLLQYLRD 63 +DIET G+ + E+ I L A ++ PV ++D + ++ + L + L++ Sbjct: 1314 LDIET--------TGLEVFDEK--IRLIQIAVENYPVIIYDMFNITKESILTGLREILKN 1363 Query: 64 ETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 E V+ + N F+ + L +D +I + +L + + N + + L Sbjct: 1364 EKVVKIIQNGKFDAKFLMHNNFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTL 1423 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLS 181 K ++ + + +L E CK ++E ++ + ++P+ Sbjct: 1424 DKQQQNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKENMETVNDIENKCILPIC 1483 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLK-LQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E + G +DL+ + K E++++ + + +L D I + Q Sbjct: 1484 DMELN-----------GITVDLESLKKSTNEILSELNTETSKLKAELKDEEININSQQQV 1532 Query: 241 LRMY----LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL--KLNT 294 L+ + I+ + + S+ LK+ L+H + L L +L S+ L +N Sbjct: 1533 LKALQNNNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRRLYKLYSAFYLKLPQHINK 1592 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + + + T +GR+S Q +PRQ+ Sbjct: 1593 KTNKIHTTFNQLKTF-------SGRFSSEKPNLQQIPRQKN------------------- 1626 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I ++AD IE ++ A I +D +KA+ N D++ T + Sbjct: 1627 ---------IREIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTAS 1677 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 PI V+KE R I K + L Y Sbjct: 1678 IITKKPIADVNKEDRHIAKAINFGLIY 1704 >gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] Length = 896 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 102/257 (39%), Gaps = 36/257 (14%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQTYALRMYLFLITG 250 + RG R+DLD + + + +E L+E+I ++ +I+S Q A+ LF Sbjct: 502 AMETRGIRVDLDFLQRFGREVEKELASLEEEIHEMAGEPFLIQSPPQLAAI---LFDRLQ 558 Query: 251 IDLVDMSEGTLKSILSHSNITQLA------KDLILNRLASSGSAILKLNTLSEAVSSDGR 304 + ++G + +T LA +I R A + + GR Sbjct: 559 LPTQKKTKGRTAYSTDNEVLTALADYHPIAAKVIAYRTLGKLKATYVDGLCKQVHPASGR 618 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + T + TGR S QN+P RGE A + Sbjct: 619 IHTTF-VQSVAATGRLSSRDPNLQNIP----------------VRGELGAQ--------L 653 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R + S+G + D + IE R+LA + + ++AF GED++ T A+ F + V Sbjct: 654 RQAFLPSSGYIFISGDYSQIELRLLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELV 713 Query: 425 SKEQRAIGKVMELALGY 441 S+E R KV+ + Y Sbjct: 714 SREMRRQAKVINFGIIY 730 >gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725] gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725] Length = 907 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L + S RL T G + TGR S QN+P +T + + Sbjct: 620 VDALPKLADSRDRLHTTFNQIGTT-TGRLSSSNPNLQNIP---------VKTDEGMK--- 666 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R IA NG L+ D + IE RVLA ++ ++ I A+ N ED++ Sbjct: 667 ------------IRQGFIADNGNVLMGIDYSQIELRVLAELSKDENLIAAYKNNEDLHRV 714 Query: 412 TYAKAFNTPI-DKVSKEQRAIGKVMELALGY 441 T K F ++VS+EQR I K + ++ Y Sbjct: 715 TAKKIFELEDGEEVSREQRIIAKTINFSIIY 745 >gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665] gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 937 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 38/182 (20%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+++++H + T+L + + L E V+ D R+ T A+ TGR Sbjct: 630 LENLMAHRDATKLRQ---------------TVEGLLETVAPDDRIHTTYSQTAAA-TGRL 673 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R E I R +AD +A L+ A Sbjct: 674 SSLHPNLQNIPVRTEAGRRI---------REVFVADE------------VAGEQAVLLSA 712 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++ F D+V+ EQRA K M L Sbjct: 713 DYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGL 772 Query: 440 GY 441 Y Sbjct: 773 AY 774 >gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379] gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379] Length = 893 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASD---CVRSCIIASNGKKLVVADLAG 383 PR R QT+ + R + +DP + + SD +R IA G ++ AD + Sbjct: 615 PRTGRVHTSYNQTVTSTGRLSS-SDPNLQNIPIRSDEGRMIRHAFIAPPGHVIISADYSQ 673 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++G+ +AF + EDI+ T ++ F + V+ E R K + + Y Sbjct: 674 IELRVLAHLSGDPVFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQ 733 Query: 444 GA 445 G+ Sbjct: 734 GS 735 >gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101] Length = 1020 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G +L+ AD + IE R+LA ++GE+ ++A+ G+D++ T D+ Sbjct: 765 IRKAFLPEAGWQLISADYSQIELRILAHLSGEEVLVQAYQQGDDVHALTARLLLEK--DE 822 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 VS ++R +GK + + Y GA+ F Sbjct: 823 VSADERRLGKTINFGVIYGMGAQRF 847 >gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804] gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii] Length = 948 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 4/94 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A +G LV AD + IE R++A ++ + +AFA G+DI+ T ++ F +D+ Sbjct: 710 VREAFVAEHGV-LVSADYSQIELRIMAHVSDDANLQQAFAAGKDIHRATASEIFGVALDE 768 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V +QR K + L Y G VF +AS+ G+ Sbjct: 769 VGADQRRAAKAINFGLIY--GMGVFG-LASNLGI 799 >gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] Length = 998 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A AF NG DI+ T ++ F P++ Sbjct: 755 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRNAFENGIDIHAMTASEMFGVPVEG 814 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 815 MPSEVRRRAKAINFGIIY 832 >gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7] Length = 860 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 1/81 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR+ +AS G+ +V AD + IE RV+A ++ ++ +AF G+DI+ T A+ F + Sbjct: 622 VRAAFVASGGQ-IVSADYSQIELRVMAHVSDDENLRQAFERGDDIHQATAAEVFGAAQAE 680 Query: 424 VSKEQRAIGKVMELALGYQGG 444 VS EQR K + L Y G Sbjct: 681 VSAEQRRAAKAINFGLIYGMG 701 >gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3] gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3] Length = 995 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ G KL+ AD + IE RVLA +A AF NG DI+ T ++ F P++ Sbjct: 752 IRTAFISTPGHKLLSADYSQIELRVLAHVADIPQLRSAFENGIDIHAMTASEMFGVPVEG 811 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 812 MPSEVRRRAKAINFGIIY 829 >gi|27462176|gb|AAO15360.1| thermostable DNA polymerase [Aquifex pyrophilus] Length = 574 Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 32/156 (20%) Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + E + D RL + GA TGR S QN+PR+ER+ Sbjct: 296 KFKEIKENLKGD-RLYPEFKQIGAV-TGRMSSLKPNVQNVPREERA-------------- 339 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A G V+AD + IE R+ A E+ I+AF G+D++ Sbjct: 340 ----------------IFKAPEGNTFVIADFSQIELRIAAEYVNEELMIRAFREGKDLHR 383 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 T + ++++KE+R + K + L Y AK Sbjct: 384 YTASLVLGKREEEITKEERQLAKAINFGLIYGISAK 419 >gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563] gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563] Length = 926 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 27/140 (19%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR S QN+P R E EI Sbjct: 650 GRIHASFN-QTVTATGRLSSSEPNLQNIPVRGEEGREI---------------------- 686 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 R+ IA G L+ AD + IE R+LA + + ++AF N +DI+ T K ++ Sbjct: 687 ---RNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSK 743 Query: 422 DKVSKEQRAIGKVMELALGY 441 + V+ R I K++ ++ Y Sbjct: 744 EHVTASMRNIAKIINFSIIY 763 >gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T] gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T] Length = 939 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA +V AD + IE R++A ++ + ++AFA GED++ T + F + Sbjct: 700 IRAAFIAPRDHLIVSADYSQIELRIMAHLSDDARLLEAFARGEDVHRATAGEVFGVAPAE 759 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR KV+ L Y Sbjct: 760 VTSEQRRYAKVINFGLIY 777 >gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1] Length = 833 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 81/323 (25%), Positives = 128/323 (39%), Gaps = 53/323 (16%) Query: 160 GEYCKRDVE---ATRELFKRLIP-LSDGERDLWLLDQT----------INDRGYRIDLDL 205 GE+ + E + LF+ L P LS E+ LWL + + RG R+D+ L Sbjct: 398 GEFTEDAAERALLSERLFQTLFPRLS--EKLLWLYQEVERPLSRVLAHMEARGVRLDVPL 455 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + L + +E ++L+ ++ +L +SR L LF G+ V +E T K Sbjct: 456 LEALSFELEKEMERLEGEVFRLAGHPFNLNSRDQ--LEKVLFDELGLTPVGRTEKTGKRS 513 Query: 265 LSHSNITQLAK-----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 + + L +LIL S L+ L V GRL A+ TG Sbjct: 514 TAQGALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATG 572 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + PLG +R +A G L+ Sbjct: 573 RLSSSDPNLQNIP---------------------VRTPLG---QRIRKAFVAEEGWLLLA 608 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA ++G++ + F G+DI+ T A F V + R K + Sbjct: 609 ADYSQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFG 668 Query: 439 LGYQGGAKVFKTMASHCGLDLQQ 461 + Y A ++ G+D ++ Sbjct: 669 VLYGMSA---HRLSQELGIDYKE 688 >gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C] Length = 968 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +AS G L+ AD + IE R+LA +A +AFA G+DI+ T ++ F ++ Sbjct: 725 IRAAFVASKGHLLLSADYSQIELRILAHVADITALKEAFAKGQDIHAMTASQMFGVAVEG 784 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ E R K + + Y G F +AS G+ ++ S ++ Sbjct: 785 MTSEIRRRAKAINFGIIY--GISPF-GLASQLGISRKEASDYIQ 825 >gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 957 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A+ G +++ AD + +E R+LA IA +AFA G DI+ T + F P+ Sbjct: 714 IRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFAEGVDIHAATASDMFGVPVGA 773 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 V E R K + + Y G F +A G+ Q+ ++ + Sbjct: 774 VPGELRRRAKTINFGIVY--GISAFG-LADRLGIGRQEAAEFI 813 >gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 875 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 921 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 121/309 (39%), Gaps = 72/309 (23%) Query: 162 YCKRDVEATRELFKRLIPL--SDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L+ L P SDG +R L + + G +D + L Sbjct: 489 YAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSS 548 Query: 212 LIAQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 A + +L+E+I L +I S +Q L LF G+ S KS +N Sbjct: 549 RFAHDISRLEEEIYALAGCRFLISSPKQ---LGEVLFGTMGLAGGKKS----KSGQYSTN 601 Query: 270 ITQLAKDLILNRLASSG----SAILKLNTLSEAVSS------------DGRLRGTLQFYG 313 +T+L RLA+ G S IL+ LS+ S+ GR+ + G Sbjct: 602 VTEL------ERLAAEGEVIASKILEWRQLSKLKSTYSDALIGKINPETGRVHTSFSLVG 655 Query: 314 ASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A +TGR S QN+P R E EI R+ IA Sbjct: 656 A-QTGRLSSTDPNLQNIPIRTEIGREI-------------------------RNAFIAKK 689 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G L+ AD + IE R+ A +A E ++AF EDI+ T + F V +E RA Sbjct: 690 GHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHALTAKQLFG----HVDRESRARA 745 Query: 433 KVMELALGY 441 K + A+ Y Sbjct: 746 KTINFAILY 754 >gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1] gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1] Length = 883 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 24/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GRL T + TGR S QN+P + L G I Sbjct: 605 GRLHSTFH-QTVTATGRLSSAEPNLQNIPIR-------------LETGRKIR-------- 642 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 + I G ++ AD + IE RVLA ++ ++ + AF G+DI+ T ++ F P+D Sbjct: 643 --KVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDIHTRTASEVFGVPMD 700 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E R+ K + + Y Sbjct: 701 QVTSEMRSRAKAVNFGIVY 719 >gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54] gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54] Length = 889 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + GK + AD + I+ RVLA +G+D +AFA G+DI+ T A+ F+ Sbjct: 652 IRRAFVPEAGKVFLAADYSQIDLRVLAHYSGDDALTRAFAAGQDIHARTAAELFSVSTML 711 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R + K + + Y Sbjct: 712 VNPEMRRVAKSINFGIVY 729 >gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic] gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic] Length = 875 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2] gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis] gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2] Length = 922 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 685 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 744 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 745 LTSEHRRKAKAINFGIIY 762 >gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii] gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] Length = 875 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|281413898|ref|ZP_06245640.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 815 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 79/182 (43%), Gaps = 38/182 (20%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+++++H + T+L + + L E V+ D R+ T A+ TGR Sbjct: 630 LENLMAHRDATKLRQ---------------TVEGLLETVAPDDRIHTTYSQTAAA-TGRL 673 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R E I R +AD +A L+ A Sbjct: 674 SSLHPNLQNIPVRTEAGRRI---------REVFVADE------------VAGEQAVLLSA 712 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ ++ I+AF GED++ ++ F D+V+ EQRA K M L Sbjct: 713 DYSQIEMRIMAHLSEDEGLIQAFREGEDLHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGL 772 Query: 440 GY 441 Y Sbjct: 773 AY 774 >gi|325068714|ref|ZP_08127387.1| DNA polymerase I [Actinomyces oris K20] Length = 945 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 71/165 (43%), Gaps = 29/165 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +A+ DGR+ T Q A+ TGR S QN+P R EE + Sbjct: 660 LRKAIQPDGRIHTTFQQTIAA-TGRLSSTDPNLQNIP--ARHEEGMR------------- 703 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R G + L+ AD + IE R++A ++ + I AF +GED++ Sbjct: 704 ---------IREAFTVGEGYECLMTADYSQIEMRIMAHLSADQALIDAFRSGEDLHRYVA 754 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 A ++ V+ +QR+ K M L Y G F +A G+D Sbjct: 755 ALVHGIDVEDVTAQQRSHVKAMSYGLAY--GLSTFG-LARQLGID 796 >gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] Length = 1020 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KLV AD + IE R+LA IA +AF +G DI+ T ++ F P++ Sbjct: 777 IRRAFVAVPGTKLVSADYSQIELRLLAEIAEIPALRQAFRDGIDIHAMTASEMFGVPVEG 836 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ + Q +K Sbjct: 837 MPSEVRRRAKAINFGIIY--GISAFG-LANQLGIPRDEAGQYIK 877 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS + G + AD + IE VLA +A + AFA G D++ +T + F+ P+D+ Sbjct: 709 IRSAFVPQAGHVFLSADYSQIELVVLAHMADDPGLKGAFAAGIDVHSSTASLIFDVPLDQ 768 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF 472 V+ QR I K + + Y G A K S + Q+ + S +F Sbjct: 769 VTPVQRRIAKTINFGVMYGMGTHSLAMDLKIPHSEAKQFIDQYFERYSSVRSF 821 >gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7] gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7] Length = 875 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10] gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10] Length = 893 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + G + TGR S QNLP +SEE Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654 Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I+ + +V AD + IE R+LA ++G++ ++AF G D++ T ++ FN Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V++E R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5] gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5] Length = 875 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford] gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford] Length = 872 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 635 IRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTACQIFNLQKHE 694 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 695 LTSEHRRKAKAINFGIIY 712 >gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 923 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + ++ + AF +G+D++ T A+ I+ Sbjct: 686 IRKAFIAPEGRVLLAADYSQIELRLMAHFSQDEALVHAFQHGQDVHRRTAAEVLGIAIED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTNDQRRQAKAVNFGLLY 763 >gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] Length = 878 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L+ + DGR+ T + TGR S QN+P Sbjct: 593 DGLAGYIGEDGRIHSTFH-QTITATGRISSTEPNLQNIP--------------------- 630 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I LG +R + G + AD + IE RVLA ++G++ I+A+ +DI+ T Sbjct: 631 IRMELG---RLIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLT 687 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+TP ++V+ QR K + + Y Sbjct: 688 ASQVFHTPFEEVTDLQRRNAKAVNFGIVY 716 >gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1] gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1] Length = 893 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + G + TGR S QNLP +SEE Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654 Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I+ + +V AD + IE R+LA ++G++ ++AF G D++ T ++ FN Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V++E R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82] gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82] Length = 930 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 25/143 (17%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DGR+ + + TGR S QN+P R E L R Sbjct: 651 IAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPM--RIE---------LGR--------- 689 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ Sbjct: 690 ----LIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFH 745 Query: 419 TPIDKVSKEQRAIGKVMELALGY 441 P D+V+ QR K + + Y Sbjct: 746 IPFDEVTDLQRRNAKAVNFGIVY 768 >gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica] gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] Length = 875 Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T + FN + Sbjct: 638 IRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTACQIFNLQKHE 697 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 698 LTSEHRRKAKAINFGIIY 715 >gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 870 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 67/159 (42%), Gaps = 31/159 (19%) Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342 I KLN+ L + SDG + + + TGR S QN+P + E EI Sbjct: 575 ITKLNSTYVEGLKNVIDSDGHIHSSFN-QTVTTTGRLSSTEPNLQNIPIKYEMGREI--- 630 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 R I D G D + SC D + IE RVLA ++ ++ I AF Sbjct: 631 ------RKVFIPDEEG---DILLSC------------DYSQIELRVLAHMSNDENMIDAF 669 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + DI+ T ++ F PI+ V+ R+ K + + Y Sbjct: 670 KHHSDIHTKTASEVFKVPIEDVTSLMRSRAKAVNFGIVY 708 >gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 888 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 603 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 650 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 651 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAS 698 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 699 QVFAVEPTAVDAEMRRKIKAMSYGLAY 725 >gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 926 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GK+L+ AD + IE R++A +A + AFA+G DI+ T ++ F P+D Sbjct: 687 IRHAFVAEPGKRLISADYSQIELRLVAHVAEIEGLRDAFADGADIHAITASQVFGVPLDG 746 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 747 MDSALRRRAKAINFGIIY 764 >gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4] Length = 930 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 25/143 (17%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DGR+ + + TGR S QN+P R E L R Sbjct: 651 IAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPM--RIE---------LGR--------- 689 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ Sbjct: 690 ----LIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFH 745 Query: 419 TPIDKVSKEQRAIGKVMELALGY 441 P D+V+ QR K + + Y Sbjct: 746 IPFDEVTDLQRRNAKAVNFGIVY 768 >gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1] Length = 926 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 25/143 (17%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DGR+ + + TGR S QN+P R E L R Sbjct: 647 IAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPM--RIE---------LGR--------- 685 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ Sbjct: 686 ----LIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVFH 741 Query: 419 TPIDKVSKEQRAIGKVMELALGY 441 P D+V+ QR K + + Y Sbjct: 742 IPFDEVTDLQRRNAKAVNFGIVY 764 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 28/149 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L E V DGRLR + + TGR S QN+P R +EI Sbjct: 652 LPELVYPDGRLRTSYN-QAVTVTGRLSSSDPNLQNIPIRSAMGQEI-------------- 696 Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 RS + + + + AD + IE R++A + ++ IKAF GED++ +T Sbjct: 697 -----------RSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKAFVEGEDVHRST 745 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ +N ++V+ QR+ K + Y Sbjct: 746 AARIYNVAPEEVTPLQRSHAKTANFGIIY 774 >gi|227489383|ref|ZP_03919699.1| hypothetical protein HMPREF0294_2533 [Corynebacterium glucuronolyticum ATCC 51867] gi|227090561|gb|EEI25873.1| hypothetical protein HMPREF0294_2533 [Corynebacterium glucuronolyticum ATCC 51867] Length = 60 Score = 50.8 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 24/45 (53%), Positives = 30/45 (66%) Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 R TYGGKL ENIVQA++RD+L M + G+ IV+ V DE V Sbjct: 4 RLETYGGKLVENIVQAVARDLLVRAMTLVAQAGHKIVMHVRDEPV 48 >gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39] Length = 959 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 30/159 (18%) Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 ++ L E V SD GR+ + TGR S QN+P R E S +I Sbjct: 672 VDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRTEFSRQI---------- 720 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 R I +G LV AD + IE R+LA ++ E I+A+ +D++ Sbjct: 721 ---------------RKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTNQDVH 765 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 T F+ D ++ E+R +GK++ + Y GA+ F Sbjct: 766 SLTAKLLFDR--DGITPEERRLGKIINFGVIYGMGAQRF 802 >gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G KLV AD + IE R+L+ +A KAF +G DI+ T ++ F P++ Sbjct: 784 IRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 843 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ ++ +K Sbjct: 844 MPSEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK 884 >gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8] gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8] Length = 893 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 26/140 (18%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + G + TGR S QNLP +SEE Sbjct: 620 GRIHASFNQTGTA-TGRLSSSDPNLQNLPT--KSEE----------------------GK 654 Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I+ + +V AD + IE R+LA ++G++ ++AF G D++ T ++ FN Sbjct: 655 EIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLRAFEEGIDVHTLTASRIFNVKP 714 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V++E R GK++ ++ Y Sbjct: 715 EEVTEEMRRAGKMVNFSIIY 734 >gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] Length = 859 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 69/161 (42%), Gaps = 32/161 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344 KLN+ L + + DGR+ A RTGR S QN+P R E ++ Sbjct: 567 KLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIPIRTEMGSKL----- 620 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 R+ +A G LV AD + IE R+LA + G+ +AF + Sbjct: 621 --------------------RAYFVAKPGCVLVDADYSQIELRILAHVTGDAHMQEAFLS 660 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 G DI+ +T AK +N + V+ R+ K + + Y GA Sbjct: 661 GADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGA 701 >gi|154336355|ref|XP_001564413.1| mitochondrial DNA polymerase I protein A [Leishmania braziliensis MHOM/BR/75/M2904] gi|134061448|emb|CAM38475.1| putative mitochondrial DNA polymerase I protein A [Leishmania braziliensis MHOM/BR/75/M2904] Length = 1264 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 72/176 (40%), Gaps = 36/176 (20%) Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L ++G A L N L E TGR S QNLPR +T Sbjct: 963 LPATGYATLHPNFLQEGTD----------------TGRLSCVEPNLQNLPRNG-----IT 1001 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 T + D LG R C +A+ G L+ D IE RVLA + G+ +KA Sbjct: 1002 STEEE-----GEEDLLGF-----RRCFVAAAGCVLLSIDYQQIELRVLAHLCGDPALVKA 1051 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + DI+ T F VS E+R++ K + + Y G KT+A+H G+ Sbjct: 1052 LTSSADIHQTIAEVVFKK--KPVSTEERSLAKRVVFGVLYGAGP---KTLATHMGV 1102 >gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] Length = 968 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G L+ AD + IE R+LA +A AFA GEDI+ T A F DK Sbjct: 729 IRRAFVAEPGHVLLAADYSQIELRLLAHLADVPSLRDAFAKGEDIHSRTAADIFGLAPDK 788 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V KE R K + + Y G F +A+ G+ Sbjct: 789 VDKEARRRAKTINFGIIY--GMSAFG-LAARLGI 819 >gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3] gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3] Length = 948 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 101/453 (22%), Positives = 181/453 (39%), Gaps = 86/453 (18%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 ++LCA + L + E++ + S L + ++DE V+ VAHN+ F+ + + + Sbjct: 378 MSLCADEKQAYFIPLPESAEEATHILSPLKELMQDERVLKVAHNAKFDLEVLTR---YGL 434 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 P R + ++LA +L ++G +L G + YD Sbjct: 435 PEARPLYDTMLAH-------------------YLIDADQGHSL-DELAGGLLR---YDTI 471 Query: 149 RANHVQAWQLFG-----------EYCKRDVEATRELF----KRLIP-----LSDGERDLW 188 R + ++F +Y D T L+ K+L P L++ E L Sbjct: 472 RYKDLSPLEIFALRTDVDPKLLCDYASEDAYVTLRLYQALHKQLSPTEQRLLTEVEIPLL 531 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + RG +D+ E + + R++L E +++L I S + L++ Sbjct: 532 YVLMHMEQRGIVLDI-------EALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQ 584 Query: 249 TG---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNT---- 294 G D + + E K+ + S +T L L L + IL LNT Sbjct: 585 IGELLFDELQIMEKPRKT-KTGSYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDP 643 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + DG+L + + TGR S QN+P I + + L R +A Sbjct: 644 LPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIP-------IRSDLGRPLRRA-FVA 694 Query: 355 DPLGLASDCVRSCIIASN------GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 DP + + +C + G L+ AD + +E RV+A ++ + I +F +G+DI Sbjct: 695 DPY--YTPRLSACAPVDHTHEKPIGAVLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDI 752 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + T AK F ++V+ R+ K + Y Sbjct: 753 HTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785 >gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 921 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 85/309 (27%), Positives = 122/309 (39%), Gaps = 72/309 (23%) Query: 162 YCKRDVEATRELFKRLIPL--SDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L+ L P SDG +R L + + G +D + L Sbjct: 489 YAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSS 548 Query: 212 LIAQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 A + +L+E+I L +I S +Q L LF G+ S KS +N Sbjct: 549 RFAHDISRLEEEIYVLAGCRFLISSPKQ---LGEVLFGTMGLAGGKKS----KSGQYSTN 601 Query: 270 ITQLAKDLILNRLASSGSAIL----------KL-NTLSEAV-----SSDGRLRGTLQFYG 313 +T+L RLA+ G AI KL +T S+A+ GR+ + G Sbjct: 602 VTEL------ERLAAEGEAIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVG 655 Query: 314 ASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A +TGR S QN+P R E EI R+ IA Sbjct: 656 A-QTGRLSSTDPNLQNIPIRTEIGREI-------------------------RNAFIAKK 689 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G L+ AD + IE R+ A +A E ++AF EDI+ T + F V +E RA Sbjct: 690 GHLLLSADYSQIELRLAAHVADEKALLQAFREKEDIHALTAKQLFG----HVDRESRARA 745 Query: 433 KVMELALGY 441 K + A+ Y Sbjct: 746 KTINFAILY 754 >gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] Length = 635 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I + +V AD + IE RVLA ++ ++ I+AF N EDI++ T ++ F P V Sbjct: 397 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 456 Query: 425 SKEQRAIGKVMELALGY 441 + E R KV+ + Y Sbjct: 457 TPEMRRAAKVVNFGIIY 473 >gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] Length = 909 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A G+ +V AD + IE R++A ++ + + AF D++ T A+ F P++ Sbjct: 670 IRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLGAFGANLDVHSATAAEVFGVPLED 729 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 730 VSSDQRREAKAINFGLIY 747 >gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] Length = 875 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R C + G K + AD + IE R+LA ++ ++ + AF +G D + T ++ F P++ Sbjct: 635 IRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVE 694 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 695 DVTPELRSRAKAVNFGIVY 713 >gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] Length = 931 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G + AD + IE R++A ++ + I+AF +DI+ T AK + +++ Sbjct: 692 IRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIEAFQKDQDIHAATAAKIYKVKLEE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V++EQR+ K + Y G VF Sbjct: 752 VTREQRSKAKTANFGIIY--GISVF 774 >gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] Length = 902 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 72/304 (23%), Positives = 120/304 (39%), Gaps = 58/304 (19%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 Y D + T +L +L+PL + E++L + + +I++ LV L ++ E + + Sbjct: 471 YAAEDADVTLQLHHKLMPLIEKEKNLKKVFE-------QIEMPLVPILMQM---EMRGVL 520 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL---------------- 265 D L I + L + + G + S L++IL Sbjct: 521 VDTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ 580 Query: 266 --SHSNITQ-LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + N+ Q LA D L ++ ++ KL T L V R T + T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P R+EE +R IA G ++V Sbjct: 641 GRLSSNNPNLQNIPI--RTEE----------------------GRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E R++A ++ + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 677 AADYSQVELRIIAHVSKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGY 441 L Y Sbjct: 737 GLLY 740 >gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] Length = 933 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 25/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + GA+ TGR + QN+P R+EE Sbjct: 657 GRVHTSYSITGAN-TGRLASTDPNLQNIPV--RTEE----------------------GR 691 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A G L+ D + IE R+LA IA +AFA+G DI+ T ++ F+ P+D Sbjct: 692 RIREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAFADGLDIHAMTASEMFDVPLD 751 Query: 423 KVSKEQRAIGKVMELALGY 441 +++ E R K + + Y Sbjct: 752 QMTPEVRRRAKAINFGVIY 770 >gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] Length = 875 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + G +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PI++V+ R+ K + + Y G Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716 >gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] Length = 878 Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 60/141 (42%), Gaps = 28/141 (19%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GRL TL + TGR S QN+P R E I Sbjct: 589 GRLHTTLH-QTVTNTGRLSSAEPNLQNIPIRMEEGRRI---------------------- 625 Query: 362 DCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 R I + + L+ AD + IE R+LA ++G+ I AF + +DI+ T A+ F P Sbjct: 626 ---RKVFIPRDPARVLLTADYSQIELRILAHLSGDPALITAFRDEQDIHARTAAEVFGVP 682 Query: 421 IDKVSKEQRAIGKVMELALGY 441 ++ V+ E R+ K + + Y Sbjct: 683 LEMVTPEMRSRAKAVNFGIIY 703 >gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107] gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107] Length = 998 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 62/313 (19%) Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209 YC DV TR L +L+PL +G E+ L + + G RID+ + L Sbjct: 549 YCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTL 608 Query: 210 QELIAQERKKLDEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDLVDM--------SEG 259 + + +L+ + V D + S +Q L LF G+D ++ Sbjct: 609 SDELGSTLNRLETEAKQVAEVDFNLASPKQ---LGELLFDTLGLDRKKSRRTKTGFSTDA 665 Query: 260 TLKSILSHSN--ITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASR 316 T+ L H + + + + +L++L S+ ++ L + V ++ GR+ + Sbjct: 666 TVLEKLEHDHPVVPLVLEHRVLSKLKST-----YVDALPQLVEAETGRVHTDFN-QAVTA 719 Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R E S I R + G Sbjct: 720 TGRLSSSNPNLQNIPVRTEYSRRI-------------------------RKAFLPQEGWT 754 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+L ++GE+ +A+ G+D++ T + D+VS +QR +GK + Sbjct: 755 LLSADYSQIELRILTHLSGEEVLQEAYRTGDDVHALTARLLLDK--DEVSADQRRLGKTI 812 Query: 436 ELALGYQGGAKVF 448 + Y GA+ F Sbjct: 813 NFGVIYGMGAQRF 825 >gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 965 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +GKKL+ AD + IE R+LA +A +AF G+DI+ T ++ FN P++ Sbjct: 725 IRQAFIAPSGKKLISADYSQIELRLLADVANIPALREAFQLGQDIHARTASEVFNIPLEG 784 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 785 MDALTRRRAKAINFGIIY 802 >gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 976 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 33/183 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I L K L++L S+ L N ++E GR+ A+ TGR S Sbjct: 653 HEIIQHLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707 Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R E S I R + KL+ AD + IE Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A E+ I AF +DI+ T F +++S E+R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EQISSEERRVGKTINFGVIYGMGI 800 Query: 446 KVF 448 K F Sbjct: 801 KKF 803 >gi|167933049|ref|ZP_02520136.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7b] Length = 190 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA LV AD + E R+ A +AG++ I F N DI+ T + + P+D+ Sbjct: 101 IRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQ 160 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR KV+ + Y Sbjct: 161 VTSNQRRNAKVINFGVLY 178 >gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1] gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1] Length = 765 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 63/262 (24%) Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI----------------------VK 226 +LD I +G ++DLDL KL Q++ +++E + + Sbjct: 276 VLDMEI--KGIKLDLDLNKKLSAKYRQKKAEVEEKLKIEFNKYDKEFKEFKIKHPDLASR 333 Query: 227 LTDGI-IRSSRQTYALRMYLFLITGIDLVDMSE--GTLKSILSHSNITQLAKDLILNRLA 283 L++ I I S +Q L ++ + + G+ VD + GT IL ++ +AK ++ R Sbjct: 334 LSNPINISSPKQ---LGIFFYDMLGLKPVDREKPRGTGADILGKFDVP-VAKLILEYREL 389 Query: 284 SS--GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 G+ I KL T+ + G++ T YG + TGR+S QN+P + Sbjct: 390 DKLLGTYIDKLPTVLSKRT--GKIHCTFNQYG-TVTGRFSSDSPNLQNIPSHNKD----- 441 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I +G L+ D + E R LA ++G++ IKA Sbjct: 442 ----------------------IRKMFIPDDGNILIGGDYSQQEPRSLAHMSGDEKMIKA 479 Query: 402 FANGEDIYVTTYAKAFNTPIDK 423 + NG+DIY T + + P ++ Sbjct: 480 YKNGKDIYATIASYVYKVPYEE 501 >gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis] Length = 871 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I + +V AD + IE RVLA ++ ++ I+AF N EDI++ T ++ F P V Sbjct: 633 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 692 Query: 425 SKEQRAIGKVMELALGY 441 + E R KV+ + Y Sbjct: 693 TPEMRRAAKVVNFGIIY 709 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 43/77 (55%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ I + +V AD + IE RVLA ++ ++ I+AF N EDI++ T ++ F P V Sbjct: 633 RAFIPRTKDGYIVSADYSQIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNV 692 Query: 425 SKEQRAIGKVMELALGY 441 + E R KV+ + Y Sbjct: 693 TPEMRRAAKVVNFGIIY 709 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +AS G L+ AD + IE R+LA IA KAFA+G DI+ T ++ F P+ Sbjct: 753 IRKAFVASPGHVLISADYSQIELRLLAHIADIPQLKKAFADGIDIHAMTASEMFGVPVKD 812 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 813 MPPEVRRRAKAINFGIIY 830 >gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] Length = 908 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 68/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L + V S RL T G + TGR S QN+P +T + + Sbjct: 621 VDALPKLVDSKDRLHTTFNQIGTT-TGRLSSSNPNLQNIP---------VKTDEGMK--- 667 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R IA +G L+ D + IE RVLA ++ ++ I A+ N ED++ Sbjct: 668 ------------IRQGFIADSGNVLMGIDYSQIELRVLAELSKDENLIAAYKNNEDLHRV 715 Query: 412 TYAKAFNT-PIDKVSKEQRAIGKVMELALGY 441 T K F ++VS+EQR I K + ++ Y Sbjct: 716 TAKKIFELGEGEEVSREQRIIAKTINFSIIY 746 >gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] Length = 920 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I +G AD + IE R++A ++ ++ ++AF G DI+ T AK ++ IDK Sbjct: 681 IRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFREGHDIHRATAAKIWHVDIDK 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 741 VTDAQRKKAKQANFGIIY 758 >gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493] gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493] Length = 902 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 73/304 (24%), Positives = 120/304 (39%), Gaps = 58/304 (19%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 Y D + T +L +L+PL + E++L + + +I++ LV L ++ E + + Sbjct: 471 YAAEDADVTLQLHHKLMPLIEKEKNLKKVFE-------QIEMPLVPILMKM---EMRGVL 520 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL---------------- 265 D L I + L + + G + S L++IL Sbjct: 521 VDTAMLQAQSIELGGRIALLEQQAYKLAGREFNLSSPKQLQTILYEELKLPIFKKTPGGQ 580 Query: 266 --SHSNITQ-LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + N+ Q LA D L ++ ++ KL T L V R T + T Sbjct: 581 PSTAENVLQDLALDYPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTST 640 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P R+EE +R IA G ++V Sbjct: 641 GRLSSNNPNLQNIPI--RTEE----------------------GRKIRRAFIAPPGFQMV 676 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + +E R++A I+ + IKAF DI+ T A+ F +++V+ EQR K + Sbjct: 677 AADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINF 736 Query: 438 ALGY 441 L Y Sbjct: 737 GLLY 740 >gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20] gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20] Length = 894 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%) Query: 356 PLGL-ASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 P+ L S +R I S+ L++ AD + IE RVLA I ++ I AF N EDI+ +T Sbjct: 645 PIKLEMSRKIRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTA 704 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 A F P ++V+ R+ K + + Y G Sbjct: 705 ASVFGIPKEEVTPLMRSRAKAVNFGIVYGIG 735 >gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916] gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916] Length = 875 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + G +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PI++V+ R+ K + + Y G Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716 >gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8] gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth polymerase 1 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8] Length = 834 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 115/289 (39%), Gaps = 49/289 (16%) Query: 171 RELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKL 220 R L KRL E+ LWL + + G R+D+ + L +A+E ++L Sbjct: 416 RNLLKRL---EGEEKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRL 472 Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL--AKDL 277 +E++ +L +SR L LF + + ++ T K S + + L A + Sbjct: 473 EEEVFRLAGHPFNLNSRDQ--LERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPI 530 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + L LK NT + + S GRL A+ TGR S QN+P Sbjct: 531 VEKILQHRELTKLK-NTYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP- 587 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + PLG +R +A G LV D + IE RVLA + Sbjct: 588 --------------------VRTPLG---QRIRRAFVAEAGWALVALDYSQIELRVLAHL 624 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +G++ I+ F G+DI+ T + F P + V R K + + Y Sbjct: 625 SGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] Length = 986 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + KL+ AD + IE R+L ++GE+ +AF NG+D++ T + D+ Sbjct: 731 IRKAFLPQENWKLLSADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLLLDK--DE 788 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 VS+++R +GK + + Y GA+ F Sbjct: 789 VSEDERRLGKTINFGVIYGMGAQRF 813 >gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ] gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ] Length = 908 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +LV AD + IE R++A +A + + AF N D++ T A+ F + Sbjct: 669 IRQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSLLHAFRNDLDVHRATAAEVFGVAPEA 728 Query: 424 VSKEQRAIGKVMELALGY 441 VS +QR K + L Y Sbjct: 729 VSADQRRSAKAINFGLIY 746 >gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] Length = 884 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374 TGR S QN+P R E+ EI R+ G Sbjct: 621 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGEGFD 655 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++G++ IKAF +G+DI+ T A+ D+V+ E+R+ K Sbjct: 656 TLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 715 Query: 435 MELALGY 441 + + Y Sbjct: 716 VNFGIIY 722 >gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255] gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255] Length = 1010 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+LA IA +AF +G DI+ T ++ F P+ Sbjct: 767 IRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVQG 826 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ ++ + +K Sbjct: 827 MPGEIRRRAKAINFGIIY--GISAFG-LANQLGIPREEAAAYIK 867 >gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331] gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331] Length = 902 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++V AD + +E R++A I+ + IKAF DI+ T A+ F +++ Sbjct: 663 IRRAFIAPPGFQMVAADYSQVELRIIAHISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQ 722 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 723 VTPEQRRRAKAINFGLLY 740 >gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27] gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27] Length = 834 Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 73/289 (25%), Positives = 115/289 (39%), Gaps = 49/289 (16%) Query: 171 RELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKL 220 R L KRL E+ LWL + + G R+D+ + L +A+E ++L Sbjct: 416 RNLLKRL---EGEEKLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRL 472 Query: 221 DEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL--AKDL 277 +E++ +L +SR L LF + + ++ T K S + + L A + Sbjct: 473 EEEVFRLAGHPFNLNSRDQ--LERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPI 530 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + L LK NT + + S GRL A+ TGR S QN+P Sbjct: 531 VEKILQHRELTKLK-NTYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP- 587 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + PLG +R +A G LV D + IE RVLA + Sbjct: 588 --------------------VRTPLG---QRIRRAFVAEAGWALVALDYSQIELRVLAHL 624 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +G++ I+ F G+DI+ T + F P + V R K + + Y Sbjct: 625 SGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLY 673 >gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] Length = 924 Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G + AD + IE R++A ++G+ + AF +G D++ T ++ F P Sbjct: 685 VREAFIAPPGCLIASADYSQIELRIMAHLSGDAALLLAFHDGMDVHRATASEVFGVPTSA 744 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 745 VTSEQRRYAKTINFGLIY 762 >gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] Length = 875 Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + G +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PI++V+ R+ K + + Y G Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716 >gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] Length = 875 Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + G +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PI++V+ R+ K + + Y G Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716 >gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27] gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27] Length = 877 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374 TGR S QN+P R E+ EI R+ G Sbjct: 614 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGTGYD 648 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ D+V+ E+R+ K Sbjct: 649 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 INFGIIY 715 >gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313] Length = 894 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S+ L++ AD + IE RVLA I ++ I AF N EDI+ +T A F P + Sbjct: 654 IRKVFIPSDENYLLLDADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKE 713 Query: 423 KVSKEQRAIGKVMELALGYQGG 444 +V+ R+ K + + Y G Sbjct: 714 EVTPLMRSRAKAVNFGIVYGIG 735 >gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG] gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF] Length = 914 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L ++++ DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 629 LIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 676 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I AF +GED++ T Sbjct: 677 ------------FVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 724 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 FN V E R K M L Y Sbjct: 725 YVFNVEPTAVDAEMRRKIKAMSYGLAY 751 >gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902] gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902] Length = 998 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 75/313 (23%), Positives = 127/313 (40%), Gaps = 62/313 (19%) Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209 YC DV TR L +L+PL +G E+ L + + G RID+ + L Sbjct: 549 YCGMDVHVTRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTL 608 Query: 210 QELIAQERKKLDEDI--VKLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLK 262 + + +L+ D V D + S +Q L LF G+D T Sbjct: 609 SDELGSTLNRLETDAKQVAEVDFNLASPKQ---LGELLFDTLGLDRKKSRRTKTGFSTDA 665 Query: 263 SILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASR 316 ++L H + + + +L++L S+ ++ L + V ++ GR+ + Sbjct: 666 TVLEKLENDHPVVPLVLEHRVLSKLKST-----YVDALPQLVEAETGRVHTDFN-QAVTA 719 Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R E S I R + G Sbjct: 720 TGRLSSSNPNLQNIPVRTEYSRRI-------------------------RKAFLPQEGWT 754 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+L ++GE+ +A++ G+D++ T + D VS ++R +GK + Sbjct: 755 LLSADYSQIELRILTHLSGEEVLQEAYSTGDDVHALTARLLLDK--DDVSADERRLGKTI 812 Query: 436 ELALGYQGGAKVF 448 + Y GA+ F Sbjct: 813 NFGVIYGMGAQRF 825 >gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 921 Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 84/309 (27%), Positives = 121/309 (39%), Gaps = 72/309 (23%) Query: 162 YCKRDVEATRELFKRLIPL--SDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L+ L P SDG +R L + + G +D + L Sbjct: 489 YAAEDADITFRLWALLKPRLSSDGATRIYEEVDRPLPPVIARMEQAGITVDSVALHHLSS 548 Query: 212 LIAQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 A + +L+E+I L +I S +Q L LF G+ S KS +N Sbjct: 549 RFAHDISRLEEEIYVLAGCRFLISSPKQ---LGEVLFGTMGLAGGKKS----KSGQYSTN 601 Query: 270 ITQLAKDLILNRLASSG----SAILKLNTLSEAVSS------------DGRLRGTLQFYG 313 +T+L RLA+ G S IL+ LS+ S+ GR+ + G Sbjct: 602 VTEL------ERLAAEGEVIASKILEWRQLSKLKSTYSDALIGKVNPETGRVHTSFSLVG 655 Query: 314 ASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 A +TGR S QN+P R E EI R+ IA Sbjct: 656 A-QTGRLSSTDPNLQNIPIRTEIGREI-------------------------RNAFIAKK 689 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G L+ AD + IE R+ A +A E ++AF EDI+ T + F V +E RA Sbjct: 690 GHLLLSADYSQIELRLAAHVADEKALLQAFQEKEDIHALTAKQLFG----HVDRESRARA 745 Query: 433 KVMELALGY 441 K + A+ Y Sbjct: 746 KTINFAILY 754 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/196 (24%), Positives = 86/196 (43%), Gaps = 41/196 (20%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A G + D + IE R+LA + ++ + AFAN EDI+V T F + Sbjct: 649 KSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHVRTAMMIFG----ES 704 Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTST-FE------ 473 + E R++ K + L GY+ ++ K AS ++++ +N S FE Sbjct: 705 NYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKSYIEKYFENFTSIKKYFEKIKNEA 764 Query: 474 ----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 D+E A+ + M Y ++ L G+A +++K A + Sbjct: 765 KQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA-------M 814 Query: 518 LQLWKDLTEGFACVVQ 533 L++ K+L E ++Q Sbjct: 815 LEINKELNEDKKLILQ 830 >gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] Length = 882 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G V AD + IE RVLA +G+ I+A+ +DI+ T ++ F+TP D Sbjct: 642 LIRKVFVPEEGYVFVDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFD 701 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ QR K + + Y Sbjct: 702 EVTDLQRRNAKAVNFGIVY 720 >gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822] gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822] Length = 966 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 5/101 (4%) Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R I G LV AD + IE R+LA + E ++A+ N +D++ T F+ Sbjct: 710 SRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLLVEAYQNYQDVHRVTAQLLFDKA 769 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 ++ E+R+IGK + + Y GA+ F A GL +Q+ Sbjct: 770 --NITSEERSIGKTINFGVIYGMGAQRF---ARAFGLSVQE 805 >gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22] Length = 908 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 68/152 (44%), Gaps = 24/152 (15%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + + L + +++DGR+ + A+ TGR S QN+P + T +A+ R Sbjct: 618 VTVEGLIKTIAADGRIHTSFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRR 669 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 G ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ Sbjct: 670 G----------------FVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLH 713 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ F V E R K M L Y Sbjct: 714 TTAAAQVFGVEQSAVDAEMRRKIKAMSYGLAY 745 >gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC3046] Length = 976 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 33/183 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I L K L++L S+ L N ++E GR+ A+ TGR S Sbjct: 653 HEIIQHLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707 Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R E S I R + KL+ AD + IE Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A E+ I AF +DI+ T F +++S E+R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EEISSEERRVGKTINFGVIYGMGI 800 Query: 446 KVF 448 K F Sbjct: 801 KKF 803 >gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] Length = 884 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374 TGR S QN+P R E+ EI R+ G Sbjct: 621 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGEGFD 655 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++G++ IKAF +G+DI+ T A+ D+V+ E+R+ K Sbjct: 656 TLVSADYSQIELRILAHLSGDEALIKAFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 715 Query: 435 MELALGY 441 + + Y Sbjct: 716 VNFGIIY 722 >gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613] Length = 875 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + G +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PI++V+ R+ K + + Y G Sbjct: 685 ASEVFKVPIEEVTPLMRSNAKAVNFGIVYGIG 716 >gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] Length = 854 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 79/300 (26%), Positives = 121/300 (40%), Gaps = 63/300 (21%) Query: 179 PLSDGERDLWL------LDQTINDRG-----YRIDLDLV----------LKLQELIAQER 217 P S ER + L L QTI RG Y ID+ LV +KL+E + Q+ Sbjct: 421 PESTEERAMALWRLRDDLSQTIESRGLSEVLYGIDMPLVPVLVSMEKSGIKLEEPVLQDV 480 Query: 218 -KKLDEDIVKLTDGIIRSSRQTYALRM------YLFLITGIDLVDMSE-GTLKSILSHSN 269 L E + ++ + I ++ ++ L LF G+ V ++ G + Sbjct: 481 ISDLKERLERIVEEITSAAGESINLNSPKQVGCLLFEKLGLPPVKKTKTGYSTDVTVLEQ 540 Query: 270 ITQLAKD-------LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +L + L+ +R S S+ L +S +V DG +R T + + TGR S Sbjct: 541 LAELPEPHNAVPSMLLEHRALSKMSSGFALPLMS-SVCGDGIIRSTFE-SDTTGTGRLSS 598 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADL 381 QNLP G SD ++S +I G+ V AD Sbjct: 599 RDPNLQNLPA------------------------YGEWSDRIKSSLIPREKGRCFVAADY 634 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E RVLA I+GE F +G DI+ T + F V+KE R K++ L Y Sbjct: 635 SQVELRVLAHISGEKRLADIFRSGRDIHTETASMVFGVDSSMVTKELRRSAKMVTFGLLY 694 >gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] Length = 942 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A GK L+ AD A IE +LA ++ + ++AF G D++ T A F PI + Sbjct: 703 IRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFGMPIGE 762 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V + R I K + + Y G F+ Sbjct: 763 VLPDMRRIAKTINFGVMY--GMSAFR 786 >gi|270695696|ref|ZP_06222972.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] gi|270315979|gb|EFA28032.1| DNA-directed DNA polymerase [Haemophilus influenzae HK1212] Length = 288 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 73/155 (47%), Gaps = 31/155 (20%) Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G+ I AF+ G+DI+++T A+ F +D+V+ EQR K + L Y Sbjct: 1 IELRIMAHLSGDQGLINAFSQGKDIHLSTAAEIFGVSLDEVTSEQRRNAKAINFGLIY-- 58 Query: 444 GAKVFKTMASHCGL-----------------DLQQFSQNVKSTSTFEDW-EQAESHHLWM 485 G F ++ G+ +QQF ++++ + + + E L++ Sbjct: 59 GMSAF-GLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYL 117 Query: 486 QDQYPEFAVKDK----------LIGTACELVKKAW 510 D A++ K + GTA +++K+A Sbjct: 118 PDINSSNAMRRKGAERVAINAPMQGTAADIIKRAM 152 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ AD + IE R++A + +D + AF +G+D++ T A+ ++ Sbjct: 682 IRKAFIAPAGRVLLAADYSQIELRLMAHFSQDDALLDAFRHGQDVHRRTAAEVLGIALED 741 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 742 VTNDQRRQAKAVNFGLLY 759 >gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus] Length = 554 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 142 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 201 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 202 HPFNLNSRDQ--LERVLFDELGLPAIGKTENTGKRSTSAAVLEALREAHPIVEKILQYRE 259 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 260 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 307 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 308 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 349 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 350 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRTAKTINYGVLY 393 >gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] Length = 838 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 25/143 (17%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DGR+R T G + TGR S QNLP S+EI Sbjct: 564 MDEDGRVRTTFIQTGTA-TGRLSSAEPNLQNLPV---SDEI------------------- 600 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 S +R + A G LV AD + IE R+LA ++ ++ ++A+ G DI+ T + F Sbjct: 601 --SKKIRYAVTAPAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFG 658 Query: 419 TPIDKVSKEQRAIGKVMELALGY 441 ++V + R I K + + Y Sbjct: 659 ISAEEVDERLRRIAKTVNFGIIY 681 >gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] Length = 880 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 41/257 (15%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIV-KLTDGI-IRSSRQTYALRMYLFLITGI 251 + + G R+D + + K + ++ KL+E I+ K + I S +Q + ++G Sbjct: 494 MENTGVRVDEERLKKYANTLLEKIDKLEESIISKAGESFNINSPKQLGEILFGKLKLSGG 553 Query: 252 DLVDMSEGTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRL 305 T +L + ++ +D++ R + KLN+ L+ + DGR+ Sbjct: 554 KKTKTGYSTAADVLEKLALEHEIIRDILEYR------QLTKLNSTYATGLAGYIREDGRI 607 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCV 364 GT + TGR S QN+P R E +I Sbjct: 608 HGTFN-QTITATGRISSTEPNLQNIPVRTEMGSKI------------------------- 641 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R + G V AD + IE RVLA ++G++ I+++ + DI+ T ++ F+ P+++V Sbjct: 642 RDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYHSAADIHAATASQVFHVPLEEV 701 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 702 TPELRRNAKAVNFGVVY 718 >gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] Length = 931 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/297 (22%), Positives = 126/297 (42%), Gaps = 51/297 (17%) Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQ G +E ++++R+ ER L + + G ++D D + ++ AQ Sbjct: 512 WQFLGPLLH--IEKVTKVYERM------ERPLVPVLAEMEMHGIKVDRDTLSRMSNAFAQ 563 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYAL----RMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + L+ +I + + Q++ + ++ L ++L +G + + ++I Sbjct: 564 KMAGLEAEIHE-------KAGQSFNVGSPKQLGEILFDKLELPGGKKGKTGAYSTGADIL 616 Query: 272 Q-LAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCV 324 + LA + L L + KL + L + ++++ GR+ + GA+ TGR + Sbjct: 617 EDLATEHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGAN-TGRLASTD 675 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P RSEE G I R +A G L+ D + I Sbjct: 676 PNLQNIPI--RSEE-----------GRRI-----------REAFVAEEGNVLLALDYSQI 711 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 E R+LA +A D +AF NG DI+ T ++ FN P++ + R K + + Y Sbjct: 712 ELRILAHVAKIDALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIY 768 >gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden] Length = 865 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 129/297 (43%), Gaps = 53/297 (17%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVD 255 G ID ++ KL + + L+E I KL+ + I SSRQ L LF D + Sbjct: 484 GIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSRQ---LSTILF-----DKMG 535 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNTLSEAVSS--DGRLR 306 + +G S ++S ++ +L N + ILK NT ++ ++ D Sbjct: 536 IKKGKKLSSGTYSTDAEVLHELAFNGV-EIADEILKWRHFTKLKNTYTDVLAKQIDNNTS 594 Query: 307 GTLQFYG--ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 FY ++ TGR S QN+P RSEE + + Sbjct: 595 RVHTFYSMTSTVTGRLSSSNPNLQNIPI--RSEE----------------------GNAI 630 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ IA +G KL+ AD + IE R++A IA AF+ +DI++ T + FNT + Sbjct: 631 RNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT--QNI 688 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 K+ R K + + Y G F +A G+ + S++++ + F+ + + +S+ Sbjct: 689 DKKLRRKAKSINFGIIY--GISPFG-LAKQLGITRSEASKHIE--NYFKSYPEIKSY 740 >gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 128 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 187 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 188 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 245 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 246 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 293 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 294 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 335 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 336 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379 >gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 127 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 186 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 187 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 244 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 245 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 292 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 293 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 334 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 335 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 378 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ GK L+ AD + IE R+LA +A ++FA GEDI+ T A+ F P++ Sbjct: 676 IRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLPMEG 735 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 736 MDPMVRRRAKAINFGIIY 753 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ GK L+ AD + IE R+LA +A ++FA GEDI+ T A+ F P++ Sbjct: 653 IRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLPMEG 712 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 713 MDPMVRRRAKAINFGIIY 730 >gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 538 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 126 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 185 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 186 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 243 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 244 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 291 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 292 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 333 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 334 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 377 >gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065] Length = 875 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + G +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PI++V+ R K + + Y G Sbjct: 685 ASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIG 716 >gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 128 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 187 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 188 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 245 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 246 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 293 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 294 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 335 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 336 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379 >gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a] Length = 552 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA LV AD + E R+ A +AG++ I F N DI+ T + + P+D+ Sbjct: 471 IRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASDVYKIPMDQ 530 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR KV+ + Y Sbjct: 531 VTSNQRRNAKVINFGVLY 548 >gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi Abasic Site gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol In Complex With A Blunt-Ended Dna And Ddatp gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Ethylated Dttp gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Methylated Dttp gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidines gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidies Length = 540 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 128 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 187 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 188 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 245 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 246 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 293 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 294 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 335 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 336 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 379 >gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] Length = 879 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ + D R+ G + TGR S QN+P I Sbjct: 596 LANFIQDDQRIHGKFN-QTITATGRISSTEPNLQNIP---------------------IR 633 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 LG A +R + +G + AD + IE RVLA ++ ++ I A+ +DI+ T + Sbjct: 634 MELGRA---IRKVFLPEDGYVFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTAS 690 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F P+D+V+ QR K + + Y Sbjct: 691 EVFGIPMDEVTSTQRRDAKAVNFGIIY 717 >gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] Length = 875 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + G +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PI++V+ R K + + Y G Sbjct: 685 ASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIG 716 >gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall] gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall] Length = 875 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + G +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PI++V+ R K + + Y G Sbjct: 685 ASEVFKVPIEEVTPLMRGNAKAVNFGIVYGIG 716 >gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] Length = 994 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 10/127 (7%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G L+ AD + IE R+LA I +AF G DI+ T ++ F P+ Sbjct: 751 IRQAFIAKDGHVLISADYSQIELRLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVAD 810 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTSTFEDWE 476 + E R K + + Y G F +A+ G+D ++ + + T+ D Sbjct: 811 MDPETRRRAKAINFGIVY--GISAFG-LANQLGIDQGEAGAYIKTYFERFPGIRTYMDAT 867 Query: 477 QAESHHL 483 +AE L Sbjct: 868 RAEVRSL 874 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 98/430 (22%), Positives = 177/430 (41%), Gaps = 55/430 (12%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 A+ A A+ +++ P +L DR + A +L+ DE+V + H+ ++ + + Sbjct: 374 AQDAYYVPLAHDYENAPAQL-DREQILAQIKPILE---DESVQKIGHHLKYDAHVLENH- 428 Query: 85 GIDIPSKRWICTSVLAR--TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKG 138 GI++ K W ++LA N + + ++ + HLT E GK + F + Sbjct: 429 GIEL--KGWYFDTMLASYVLNAVATRHGMDDVSRLYLSHLTTTFEQVAGKGAKQKTFNQI 486 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL----IPLSDGERDLWLLDQTI 194 I++ + HV ++LF E ++ EL L +P++ R L ++++ Sbjct: 487 EIETAAHYAAEDAHV-TYRLF-EVLDAKLQKHPELVNILHNVEMPVA---RVLTIMEEN- 540 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRM-YLFLITGI 251 G +DL + +L A L+ I +L + S +Q + L L G Sbjct: 541 ---GIELDLGFLDQLGIEFANTMANLESQITELAGQSFNVSSPKQVGEILFDKLGLKGGK 597 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 T +S+L I +LIL+ S + L + +SD T Sbjct: 598 KTATGQYSTSESVLE--KIDHPITELILDYRGLSKLKSTYTDGLLKQANSDTHRVHTSYH 655 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P +E EI Q +R IA Sbjct: 656 QALTATGRLSSTDPNLQNIPVRE---EIGRQ---------------------IRKAFIAP 691 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G+ L+ AD + IE R++A + ++ + AF +G+D++ T A+ ++ V+ +QR Sbjct: 692 QGRVLLAADYSQIELRLMAHFSQDEALVDAFKHGQDVHRRTAAEVLGVALEDVTSDQRRQ 751 Query: 432 GKVMELALGY 441 K + L Y Sbjct: 752 AKAVNFGLLY 761 >gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] Length = 891 Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 3/80 (3%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA ++ + IKAF + EDI+ T + F+ P+ +VS EQR K + Sbjct: 668 ADYSQIELRLLAHLSEDPVLIKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFG 727 Query: 439 LGYQGGAKVFKTMASHCGLD 458 L Y G + F +A G+D Sbjct: 728 LIY--GQQAF-GLAHELGID 744 >gi|297242718|ref|ZP_06926656.1| family A DNA-dependent DNA polymerase, putative [Gardnerella vaginalis AMD] gi|296888929|gb|EFH27663.1| family A DNA-dependent DNA polymerase, putative [Gardnerella vaginalis AMD] Length = 96 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 5/93 (5%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ YAE I L Y+ D V++ D + +P +L Sbjct: 1 MENLSVDLETFSSVNLGKCGVYKYAESDDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL---GIDI 88 L DETV A N+ FER+ + L GI++ Sbjct: 61 SALTDETVTKWAFNAQFERVCLSRYLRDKGINV 93 >gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469] gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469] Length = 912 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 27/157 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L + D R+ TL + TGR S QN+P RSE Sbjct: 626 LDALPSLIRGDKRIHTTLN-QTVTATGRLSSSDPNLQNIPT--RSE-------------- 668 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 LG VR+ G + D + IE R+LA ++ ++ + AF +G D + Sbjct: 669 -----LG---HRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFNSGADFHAA 720 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 T A+ F P+++V+ R+ K + + Y G + F Sbjct: 721 TAARVFGVPVEEVTPALRSRAKAVNFGIVY--GQQAF 755 >gi|261337293|ref|ZP_05965177.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] gi|270277662|gb|EFA23516.1| DNA polymerase I [Bifidobacterium gallicum DSM 20093] Length = 960 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 27/152 (17%) Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + TL +A++ +DG + T + A+ TGR S QN+P NR Sbjct: 671 VQTLIDAINRTDGHIHTTFEQTVAA-TGRLSSTDPNLQNIP----------------NRN 713 Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 D RS I + G L+ AD + +E R++A +G++ I AF +G D + Sbjct: 714 AEGRD--------TRSAFIPAEGFDALLSADYSQVELRLMADFSGDEALIDAFKSGADFH 765 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + + P+D +S +QR+ K M L Y Sbjct: 766 RYVASLVYGIPVDDISGDQRSHVKAMSYGLAY 797 >gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] Length = 971 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G L+ AD + IE R+LA I +AF G DI+ T ++ F P++ Sbjct: 728 IRQAFIAAPGHLLISADYSQIELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEG 787 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ G+D + +K+ Sbjct: 788 MPSETRRRAKAINFGIVY--GISAFG-LAAQLGIDQGEAGAYIKT 829 >gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase Length = 543 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 131 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 190 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 191 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 248 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 249 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 296 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 297 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 338 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 339 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 382 >gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A] gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A] Length = 1020 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 5/141 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G +LV AD + IE R+LA IA +AF +G DI+ T ++ F P+ Sbjct: 777 IRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVLKQAFRDGLDIHAMTASEMFGVPVQG 836 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 + E R K + + Y G F +A+ G+ ++ + +K FE + ++ Sbjct: 837 MPGEIRRRAKAINFGIIY--GISAF-GLANQLGIPREEAAAYIK--KYFERFPGIRAYMD 891 Query: 484 WMQDQYPEFAVKDKLIGTACE 504 +D E L G C Sbjct: 892 ATRDFCREHGYVTTLFGRKCH 912 >gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB] gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB] Length = 901 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +V AD + IE RVLA ++ + I AFA GEDI+ T A F + Sbjct: 661 IRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLINAFAAGEDIHSRTAADVFGVFPEM 720 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R KV+ + Y Sbjct: 721 INAEMRRQAKVINFGVLY 738 >gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] Length = 1025 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G KLV AD + IE R+L+ +A KAF +G DI+ T ++ F P++ Sbjct: 782 IRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 841 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 842 MPSEIRRRAKAINFGIIY 859 >gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 906 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 621 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 668 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 669 ------------FVVGEGYESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTAAS 716 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 717 QVFGVERSAVDAEMRRKIKAMSYGLAY 743 >gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] Length = 907 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ + DGR+ + + TGR S QN+P R E L R Sbjct: 624 LANYIKEDGRIHTSFN-QTITVTGRLSSTEPNLQNIPM--RIE---------LGR----- 666 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + + G + AD + IE RVLA ++G++ I+A+ +DI+ T + Sbjct: 667 --------LIRKAFLPAKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITAS 718 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ P D+V+ QR K + + Y Sbjct: 719 QVFHIPFDEVTDLQRRNAKAVNFGIVY 745 >gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] Length = 1025 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G KLV AD + IE R+L+ +A KAF +G DI+ T ++ F P++ Sbjct: 782 IRRAFVATPGNKLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 841 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 842 MPSEIRRRAKAINFGIIY 859 >gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328] gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328] Length = 945 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 30/159 (18%) Query: 292 LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNR 349 ++ L E V SD GR+ + TGR S QN+P R E S +I Sbjct: 658 VDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRTEFSRQI---------- 706 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 R I +G LV AD + IE R+LA ++ E I+A+ +D++ Sbjct: 707 ---------------RKAFIPESGWLLVSADYSQIELRILAHLSQEKMLIEAYNTNQDVH 751 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 T F+ D+++ ++R +GK++ + Y G++ F Sbjct: 752 SLTAQLLFDK--DEITADERRLGKIINFGVIYGMGSQRF 788 >gi|18104336|gb|AAL59502.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 41/73 (56%) Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ EQ Sbjct: 2 IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61 Query: 429 RAIGKVMELALGY 441 R K + L Y Sbjct: 62 RRSAKAINFGLIY 74 >gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331] Length = 903 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 618 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 714 QVFGVEKSAVDAEMRRKIKAMSYGLAY 740 >gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18] gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18] Length = 920 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I G AD + IE R++A ++ ++ ++AF G DI+ T AK ++ IDK Sbjct: 681 IRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFREGHDIHRATAAKIWHVDIDK 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 741 VTDAQRKKAKQANFGIIY 758 >gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ ++ AD + IE R++A + ++ +KAF +G DI+ T A+ ++ Sbjct: 686 IRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQATAAEVMGIALED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTSDQRRQAKAINFGLLY 763 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I N L AD + IE R++A ++G+ I+AF +G DI+ T AK + P++ Sbjct: 681 IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +V+ + R K + Y G VF +A G+ Sbjct: 741 EVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772 >gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] Length = 903 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 26/150 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L + RL T GA+ TGR S QN+P +S+E + Sbjct: 618 VDALPKLADERNRLHTTFNQTGAA-TGRLSSSNPNLQNIPV--KSDEGIK---------- 664 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R I+ G L+ D + IE RVLA ++ ++ IKA+++G D++ Sbjct: 665 ------------IRRGFISDKGNTLLAIDYSQIELRVLAELSKDETLIKAYSDGLDLHDL 712 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T K F+ D V++ QR + K++ ++ Y Sbjct: 713 TAKKIFDIDTD-VTRSQRTMAKIVNFSIIY 741 >gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14] gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14] Length = 889 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 604 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 651 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 652 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTAAS 699 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 700 QVFGVDRSAVDAEMRRKIKAMSYGLAY 726 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I N L AD + IE R++A ++G+ I+AF +G DI+ T AK + P++ Sbjct: 681 IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +V+ + R K + Y G VF +A G+ Sbjct: 741 EVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772 >gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247] gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247] Length = 949 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++ + I+AF GED++ ++AF PID+V+ E R K M Sbjct: 721 LMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVPIDEVTTEMRHRVKAM 780 Query: 436 ELALGY 441 L Y Sbjct: 781 SYGLAY 786 >gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel] gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel] Length = 860 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 76/297 (25%), Positives = 129/297 (43%), Gaps = 53/297 (17%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVD 255 G ID ++ KL + + L+E I KL+ + I SSRQ L LF D + Sbjct: 479 GIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSRQ---LSTILF-----DKMG 530 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNTLSEAVSS--DGRLR 306 + +G S ++S ++ +L N + ILK NT ++ ++ D Sbjct: 531 IKKGKKLSSGTYSTDAEVLHELAFNGV-EIADEILKWRHFTKLKNTYTDVLAKQIDNNTS 589 Query: 307 GTLQFYG--ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 FY ++ TGR S QN+P RSEE + + Sbjct: 590 RVHTFYSMTSTVTGRLSSSNPNLQNIPI--RSEE----------------------GNAI 625 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ IA +G KL+ AD + IE R++A IA AF+ +DI++ T + FNT + Sbjct: 626 RNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQIFNT--QNI 683 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 K+ R K + + Y G F +A G+ + S++++ + F+ + + +S+ Sbjct: 684 DKKLRRKAKSINFGIIY--GISPFG-LAKQLGITRSEASKHIE--NYFKSYPEIKSY 735 >gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] Length = 937 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 69/272 (25%), Positives = 111/272 (40%), Gaps = 48/272 (17%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYAL 241 ER L + + G ++D D + ++ AQ+ L+ +I L G + S +Q L Sbjct: 537 ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAALEAEIHGLAGGPFNVGSPKQ---L 593 Query: 242 RMYLF----LITGIDLVDMSEGTLKSILSHSNITQLAKDLI--------LNRLASSGSAI 289 LF L G+ + + GT +L ++ DL L++L S+ + Sbjct: 594 GEILFERMSLQGGVKGKNGAWGTGADVLE--DLAAEGHDLPARVLDWRQLSKLKSTYTDA 651 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L+ + E GR+ + GA+ TGR + QN+P R+EE Sbjct: 652 LQEHIHPET----GRVHTSYSIAGAN-TGRLASTDPNLQNIP--VRTEE----------- 693 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A GK LV D + IE R+LA IA +AF G DI+ Sbjct: 694 -----------GRRIREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQAFREGHDIH 742 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ FN P++ + R K + + Y Sbjct: 743 AMTAAEMFNVPLEGMDPMVRRQAKAINFGVIY 774 >gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] Length = 882 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 36/177 (20%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422 +R IA +G KL+ D + +E RVLA ++ ++ +KA+ +D++ T K F + Sbjct: 642 IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIFELEEKE 701 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------- 475 +VS+EQR + K++ ++ Y G F +A G+ ++ ++ +K FE + Sbjct: 702 EVSREQRTMAKIINFSIIY--GKTPF-GLAKELGISVKDAAEYIK--RYFEQYPRVAQFE 756 Query: 476 ----EQAESH-------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 E AE H + +++Q AV + GTA E++KK Sbjct: 757 TEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILKKV 813 >gi|18104300|gb|AAL59484.1| DNA polymerase I [Escherichia coli] gi|18104302|gb|AAL59485.1| DNA polymerase I [Escherichia coli] gi|18104304|gb|AAL59486.1| DNA polymerase I [Escherichia coli] gi|18104306|gb|AAL59487.1| DNA polymerase I [Escherichia coli] gi|18104308|gb|AAL59488.1| DNA polymerase I [Escherichia coli] gi|18104310|gb|AAL59489.1| DNA polymerase I [Escherichia coli] gi|18104312|gb|AAL59490.1| DNA polymerase I [Escherichia coli] gi|18104314|gb|AAL59491.1| DNA polymerase I [Escherichia coli] gi|18104316|gb|AAL59492.1| DNA polymerase I [Escherichia coli] gi|18104318|gb|AAL59493.1| DNA polymerase I [Escherichia coli] gi|18104320|gb|AAL59494.1| DNA polymerase I [Escherichia coli] gi|18104322|gb|AAL59495.1| DNA polymerase I [Escherichia coli] gi|18104324|gb|AAL59496.1| DNA polymerase I [Escherichia coli] gi|18104326|gb|AAL59497.1| DNA polymerase I [Escherichia coli] gi|18104328|gb|AAL59498.1| DNA polymerase I [Escherichia coli] gi|18104330|gb|AAL59499.1| DNA polymerase I [Escherichia coli] gi|18104332|gb|AAL59500.1| DNA polymerase I [Escherichia coli] gi|18104334|gb|AAL59501.1| DNA polymerase I [Escherichia coli] gi|18104338|gb|AAL59503.1| DNA polymerase I [Escherichia coli] gi|18104340|gb|AAL59504.1| DNA polymerase I [Escherichia coli] gi|18104342|gb|AAL59505.1| DNA polymerase I [Escherichia coli] gi|18104344|gb|AAL59506.1| DNA polymerase I [Escherichia coli] gi|18104346|gb|AAL59507.1| DNA polymerase I [Escherichia coli] gi|18104348|gb|AAL59508.1| DNA polymerase I [Escherichia coli] gi|18104350|gb|AAL59509.1| DNA polymerase I [Escherichia coli] gi|18104352|gb|AAL59510.1| DNA polymerase I [Escherichia coli] gi|18104354|gb|AAL59511.1| DNA polymerase I [Escherichia coli] gi|18104356|gb|AAL59512.1| DNA polymerase I [Escherichia coli] gi|18104358|gb|AAL59513.1| DNA polymerase I [Escherichia coli] gi|18104360|gb|AAL59514.1| DNA polymerase I [Escherichia coli] gi|18104362|gb|AAL59515.1| DNA polymerase I [Escherichia coli] gi|18104364|gb|AAL59516.1| DNA polymerase I [Escherichia coli] gi|18104366|gb|AAL59517.1| DNA polymerase I [Escherichia coli] gi|18104368|gb|AAL59518.1| DNA polymerase I [Escherichia coli] gi|18104370|gb|AAL59519.1| DNA polymerase I [Escherichia coli] gi|18104372|gb|AAL59520.1| DNA polymerase I [Escherichia coli] gi|18104374|gb|AAL59521.1| DNA polymerase I [Escherichia coli] gi|18104376|gb|AAL59522.1| DNA polymerase I [Escherichia coli] gi|18104378|gb|AAL59523.1| DNA polymerase I [Escherichia coli] gi|18104380|gb|AAL59524.1| DNA polymerase I [Escherichia coli] gi|18104382|gb|AAL59525.1| DNA polymerase I [Escherichia coli] gi|18104384|gb|AAL59526.1| DNA polymerase I [Escherichia coli] gi|18104386|gb|AAL59527.1| DNA polymerase I [Escherichia coli] gi|18104388|gb|AAL59528.1| DNA polymerase I [Escherichia coli] gi|18104390|gb|AAL59529.1| DNA polymerase I [Escherichia coli] gi|18104392|gb|AAL59530.1| DNA polymerase I [Escherichia coli] gi|18104394|gb|AAL59531.1| DNA polymerase I [Escherichia coli] gi|18104396|gb|AAL59532.1| DNA polymerase I [Escherichia coli] gi|18104398|gb|AAL59533.1| DNA polymerase I [Escherichia coli] gi|18104400|gb|AAL59534.1| DNA polymerase I [Escherichia coli] gi|18104402|gb|AAL59535.1| DNA polymerase I [Escherichia coli] gi|18104404|gb|AAL59536.1| DNA polymerase I [Escherichia coli] gi|18104406|gb|AAL59537.1| DNA polymerase I [Escherichia coli] gi|18104408|gb|AAL59538.1| DNA polymerase I [Escherichia coli] gi|18104410|gb|AAL59539.1| DNA polymerase I [Escherichia coli] gi|18104412|gb|AAL59540.1| DNA polymerase I [Escherichia coli] gi|18104414|gb|AAL59541.1| DNA polymerase I [Escherichia coli] gi|18104416|gb|AAL59542.1| DNA polymerase I [Escherichia coli] gi|18104420|gb|AAL59544.1| DNA polymerase I [Escherichia coli] gi|18104422|gb|AAL59545.1| DNA polymerase I [Escherichia coli] gi|18104424|gb|AAL59546.1| DNA polymerase I [Escherichia coli] gi|18104430|gb|AAL59549.1| DNA polymerase I [Escherichia coli] gi|18104432|gb|AAL59550.1| DNA polymerase I [Escherichia coli] gi|18104434|gb|AAL59551.1| DNA polymerase I [Escherichia coli] gi|18104436|gb|AAL59552.1| DNA polymerase I [Escherichia coli] gi|18104438|gb|AAL59553.1| DNA polymerase I [Escherichia coli] gi|18104440|gb|AAL59554.1| DNA polymerase I [Escherichia coli] gi|18104442|gb|AAL59555.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 41/73 (56%) Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ EQ Sbjct: 2 IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61 Query: 429 RAIGKVMELALGY 441 R K + L Y Sbjct: 62 RRSAKAINFGLIY 74 >gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl polymerase 1 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus] Length = 831 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 44/279 (15%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL ++ + G R+D+ + L + E ++L+E++ +L Sbjct: 419 LKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQALSLEVEAEVRQLEEEVFRLAG 478 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGS 287 +SR L LF G+ + +E T K S + + L + I++R+ Sbjct: 479 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVDRILQYRE 536 Query: 288 AILKLNTLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 NT + + + GRL A+ TGR S QN+P Sbjct: 537 LTKLKNTYIDPLPALVHPKTGRLHTRFN-QTATATGRLSSSDPNLQNIP----------- 584 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + PLG +R +A G LVV D + IE RVLA ++G++ I+ F Sbjct: 585 ----------VRTPLG---QRIRRAFVAEEGWVLVVLDYSQIELRVLAHLSGDENLIRVF 631 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 G DI+ T + F + V R K + + Y Sbjct: 632 QEGRDIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLY 670 >gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1] Length = 927 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 4/121 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G + AD + IE R++A ++ + ++AF G D++ T A+ F + Sbjct: 688 IRAAFIAPPGHVIASADYSQIELRIMAHLSQDPALLRAFEQGLDVHRATAAEVFGVSPEH 747 Query: 424 VSKEQRAIGKVMELALGY----QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V+ EQR K + L Y G AK AS ++++ + + + +A+ Sbjct: 748 VTPEQRRYAKTINFGLIYGMSPYGLAKALGIDASAAKSYIERYFERFAGVRAYMEQTRAQ 807 Query: 480 S 480 + Sbjct: 808 A 808 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I N L AD + IE R++A ++G+ I+AF +G DI+ T AK + P++ Sbjct: 681 IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 740 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +V+ + R K + Y G VF +A G+ Sbjct: 741 EVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 772 >gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1] gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1] Length = 912 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ T G + TGR S QN+P Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R +A GK L+ D + +E RVL ++ ++ Sbjct: 664 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 706 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + + VS+EQR I K++ ++ Y G AK K Sbjct: 707 IEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + ++FE E E H + ++ Q Sbjct: 767 DASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 827 AVNTVIQGTAAEVLKKVM 844 >gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612] Length = 421 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 73/183 (39%), Gaps = 33/183 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I L K L +L S+ L N ++E GR+ A+ TGR S Sbjct: 98 HEIIQHLIKHRTLTKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 152 Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R E S I R + KL+ AD + IE Sbjct: 153 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 187 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A E+ I AF +DI+ T F + +S ++R +GK + + Y G Sbjct: 188 LRILAHLADEEILINAFHKNDDIHSLTAKLIFEKEV--ISSDERRVGKTINFGVIYGMGI 245 Query: 446 KVF 448 K F Sbjct: 246 KKF 248 >gi|18104418|gb|AAL59543.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 41/73 (56%) Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ EQ Sbjct: 2 IAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQ 61 Query: 429 RAIGKVMELALGY 441 R K + L Y Sbjct: 62 RRSAKAINFGLIY 74 >gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 919 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L ++++ DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 728 LIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 775 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I AF +GED++ T Sbjct: 776 ------------FVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 823 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 FN V E R K M L Y Sbjct: 824 YVFNVEPTAVDAEMRRKIKAMSYGLAY 850 >gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ ++ AD + IE R++A + ++ +KAF +G DI+ T A+ ++ Sbjct: 686 IRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIHQATAAEVMGIALED 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 746 VTSDQRRQAKAINFGLLY 763 >gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 884 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 32/175 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422 +R IA +G KL+ D + +E RVLA ++ ++ +KA+ +D++ T K F + Sbjct: 644 IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIFELEEKE 703 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK-------STSTFED- 474 +VS+EQR + K++ ++ Y G F +A G+ ++ ++ +K + FE Sbjct: 704 EVSREQRTMAKIINFSIIY--GKTPF-GLAKELGISVKDAAEYIKRYFAQYPRVAQFETE 760 Query: 475 -WEQAESH-------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 E AE H + +++Q AV + GTA E++KK Sbjct: 761 IIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILKKV 815 >gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] Length = 896 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I +N +++ AD + IE RVLA I + I+AF EDI+ TT +K F P + Sbjct: 656 IRKVFIPTNQDYVLLDADYSQIELRVLAHITDDSNMIEAFLKNEDIHTTTASKVFGIPPE 715 Query: 423 KVSKEQRAIGKVMELALGYQGG 444 +VS R+ K + + Y G Sbjct: 716 EVSSLMRSRAKAVNFGIVYGIG 737 >gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11] gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11] gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11] Length = 912 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ T G + TGR S QN+P Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R +A GK L+ D + +E RVL ++ ++ Sbjct: 664 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 706 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + + VS+EQR I K++ ++ Y G AK K Sbjct: 707 IEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + ++FE E E H + ++ Q Sbjct: 767 DASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 827 AVNTVIQGTAAEVLKKVM 844 >gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 906 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A ++ AD + IE R++A ++ + + AF + +D++ T + FN PI++ Sbjct: 670 IRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHDKDVHSVTASTMFNMPINE 729 Query: 424 VSKEQRAIGKVMELALGY 441 V+K+ R K + L Y Sbjct: 730 VTKKHRRRSKAINFGLIY 747 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA ++G++ I F G+DI+ T A+ F P+++V+ E R K + Sbjct: 651 LLSADYSQIELRLLAHMSGDENFIDVFKRGQDIHARTAAEVFGIPLEEVTPELRRHAKAV 710 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + Y G A+ G + ++ + F D AE+H Sbjct: 711 NFGIVYGISDFGLARNLHISRKEAGDYISRYFERYPGVRAFMDKVVAEAH 760 >gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 882 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 32/175 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422 +R IA +G KL+ D + +E RVLA ++ ++ +KA+ +D++ T K F + Sbjct: 642 IRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQEKQDLHSVTAKKIFELEEKE 701 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK-------STSTFED- 474 +VS+EQR + K++ ++ Y G F +A G+ ++ ++ +K + FE Sbjct: 702 EVSREQRTMAKIINFSIIY--GKTPF-GLAKELGISVKDAAEYIKRYFAQYPRVAQFETE 758 Query: 475 -WEQAESH-------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 E AE H + +++Q AV + GTA E++KK Sbjct: 759 IIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVVQGTAAEILKKV 813 >gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1] gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1] Length = 910 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/179 (25%), Positives = 77/179 (43%), Gaps = 38/179 (21%) Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 +++SH N+++L + + KL TL + +DGR+ T + TGR S Sbjct: 607 AVISHRNLSKL-----------KSTYVDKLATLID--PADGRVHTTFN-QTVTATGRLSS 652 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P I P G +R+ +A+ G + AD + Sbjct: 653 SNPNLQNIP---------------------IRTPEG---RRLRAAFVAAAGHLFLAADYS 688 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ RVLA +G+ +AFA+ +DI+ T A+ F VS + R + K + + Y Sbjct: 689 QIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVY 747 >gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33] gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33] Length = 912 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ T G + TGR S QN+P Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R +A GK L+ D + +E RVL ++ ++ Sbjct: 664 --VKTDDGIK---------------IREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENL 706 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + + VS+EQR I K++ ++ Y G AK K Sbjct: 707 IEAYKEEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + ++FE E E H + ++ Q Sbjct: 767 DASEYIKKYFEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 827 AVNTVIQGTAAEVLKKVM 844 >gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1052 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKL+ AD + IE R+LA IA +AF G DI+ T + F +D+ Sbjct: 809 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 868 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ ++ S +K Sbjct: 869 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 909 >gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44] gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44] Length = 877 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374 TGR S QN+P R E+ EI R+ G Sbjct: 614 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 648 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ D+V+ E+R+ K Sbjct: 649 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 INFGIIY 715 >gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 976 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 75/183 (40%), Gaps = 33/183 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I L K L++L S+ L N +SE GR+ A+ TGR S Sbjct: 653 HEIIPFLIKHRTLSKLLSTYIDALP-NLISEKT---GRVHTNFN-QAATATGRLSSSNPN 707 Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R E S I R + G KL+ AD + IE Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKGWKLLSADYSQIE 742 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A E+ I AF +DI+ T F + ++ ++R +GK + + Y G Sbjct: 743 LRILAHLANEEILINAFHKNDDIHSLTARLIFEK--EDINSDERRVGKTINFGVIYGMGI 800 Query: 446 KVF 448 K F Sbjct: 801 KKF 803 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I N L AD + IE R++A ++G+ I+AF +G DI+ T AK + P++ Sbjct: 685 IRKAFIPDNTDCLFFSADYSQIELRIMAHLSGDPHMIEAFQSGADIHAATAAKIYGIPVE 744 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +V+ + R K + Y G VF +A G+ Sbjct: 745 EVTSDMRRKAKTANFGIIY--GISVF-GLAERLGI 776 >gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] Length = 976 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I L K L++L S+ L N ++E GR+ A+ TGR S Sbjct: 653 HEIIQHLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707 Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R E S I R + KL+ AD + IE Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNCKLLSADYSQIE 742 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A E+ I AF +DI+ T F +++S ++R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EQISSDERRVGKTINFGVIYGMGI 800 Query: 446 KVF 448 K F Sbjct: 801 KKF 803 >gi|237755371|ref|ZP_04583999.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] gi|237692455|gb|EEP61435.1| DNA polymerase I [Sulfurihydrogenibium yellowstonense SS-5] Length = 586 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 75/191 (39%), Gaps = 38/191 (19%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 + + R+ G + GA+ TGR S QN+P+ Sbjct: 318 TRNKRVYGEFKQIGAA-TGRMSSLRPNLQNIPKN-------------------------- 350 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 ++ G K +VAD + IE R+ A ++ I AF G+D++ T + Sbjct: 351 ----LKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGK 406 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH---CGLDLQQ---FSQN-VKSTSTF 472 D+++KE+R + K + L Y K A ++LQ+ F +N K +F Sbjct: 407 SYDEITKEERQLAKAINFGLIYGMSPKSLIEYAKANYGVSINLQEAKKFHENYFKFYKSF 466 Query: 473 EDWEQAESHHL 483 +DW HL Sbjct: 467 KDWHDRVKEHL 477 >gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03] gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07] gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22] gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26] gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32] gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12] Length = 933 Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GKKL+ AD + IE R+LA +A +AF G+DI+ T ++ FN P++ Sbjct: 693 IRQAFIAPPGKKLISADYSQIELRLLADVANIPALREAFQLGQDIHARTASEVFNIPLEG 752 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 753 MDALTRRRAKAINFGIIY 770 >gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] Length = 873 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374 TGR S QN+P R E+ EI R+ G Sbjct: 610 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 644 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ D+V+ E+R+ K Sbjct: 645 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQDEVTSEERSHAKA 704 Query: 435 MELALGY 441 + + Y Sbjct: 705 INFGIIY 711 >gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4] gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1047 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKL+ AD + IE R+LA IA +AF G DI+ T + F +D+ Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ ++ S +K Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904 >gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24] gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24] gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24] Length = 907 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 622 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 669 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + +AF +GED++ T A Sbjct: 670 ------------FVVGEGFESLMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAA 717 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ V E R K M L Y Sbjct: 718 QVFSVEQSAVDAEMRRKIKAMSYGLAY 744 >gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B] Length = 850 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 610 LIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 670 NVTPEMRSQAKAVNFGIVY 688 >gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKL+ AD + IE R+LA IA +AF G DI+ T + F +D+ Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ ++ S +K Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904 >gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 1047 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKL+ AD + IE R+LA IA +AF G DI+ T + F +D+ Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ ++ S +K Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904 >gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus] gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus] Length = 943 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA + +V AD + IE R++A ++ + I F +G+DI+ TT ++ F T ++ Sbjct: 704 IRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFLSGKDIHTTTASEIFVTSLNL 763 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ EQR K + L Y A Sbjct: 764 VTNEQRHQAKTINFGLIYGMSA 785 >gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1] gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1] Length = 1047 Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKL+ AD + IE R+LA IA +AF G DI+ T + F +D+ Sbjct: 804 IRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLREAFEQGIDIHAATASAMFGVALDQ 863 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ ++ S +K Sbjct: 864 MTGDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 904 >gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] Length = 850 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 610 LIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 670 NVTPEMRSQAKAVNFGIVY 688 >gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 914 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 60/258 (23%), Positives = 104/258 (40%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ + G + TGR S QN+P Sbjct: 619 LNKLKTT-----YVDTLPLLVDENSRIHTSFNQIGTA-TGRLSSSDPNLQNIP------- 665 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R IA GK L+ D + +E RVL ++ ++ Sbjct: 666 --VKTDDGIK---------------IREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENL 708 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + VS+EQR I K++ ++ Y G AK K Sbjct: 709 IEAYREEKDLHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 768 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + +TFE E E H + ++ Q Sbjct: 769 DASEYIKKYFEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 828 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 829 AVNTVIQGTAAEVLKKVM 846 >gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424] gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424] Length = 966 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I + LV AD + IE R+LA ++ E ++A+ N +D++ T F+ + Sbjct: 713 IRKAFITQDDWLLVSADYSQIELRILAHLSQEPVLLEAYQNYQDVHRVTAQLLFDKEV-- 770 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 ++ E+R+IGK + + Y GA+ F A GL Q+ Sbjct: 771 ITSEERSIGKTINFGVIYGMGAQRF---ARSMGLSFQE 805 >gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246] Length = 824 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G LV AD + IE R+L G+D AFA D++ A+ F P + Sbjct: 740 LRKAFIPRDGWVLVTADYSQIELRLLTHFCGDDTLRAAFAEDRDVHTAVAAQIFKVPEGE 799 Query: 424 VSKEQRAIGKVMELALGY 441 V+K QR + K + + Y Sbjct: 800 VTKAQRGVAKTVNFGVLY 817 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 93/357 (26%), Positives = 146/357 (40%), Gaps = 73/357 (20%) Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 AL+ S K +E GK+ I F Y C A+ +L GE + +EAT Sbjct: 483 ALHLSRQTVKYDELVGTGKSAIGIFEVEPQKLSDYACQDADIT--LKLRGELAAK-LEAT 539 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 EL + L E L + + +G ID + + KL K++E++V LT+ Sbjct: 540 PELLEVCRTL---EFPLVRVLADMEHQGVSIDTEHLAKLA-------VKVNEELVGLTER 589 Query: 231 IIRSSRQTY------ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 I ++ +T+ L LF D++ + +N+ L + +LN +A+ Sbjct: 590 IHEAAGETFNIDSPKQLGHILF-----DVLKLPTKKATKTGYSTNVQVLEELALLNPIAA 644 Query: 285 S-----------GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-R 332 G+ I L L A + GRL + + TGR S QN+P R Sbjct: 645 EVLEYRSLQKLKGTYIEALPKLLHAAT--GRLHTSFN-QSITATGRLSSSNPNLQNIPIR 701 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAW 391 + +EI R I SN + L++ AD + IE RV A Sbjct: 702 TDLGKEI-------------------------RRAFIPSNPENLLLSADYSQIELRVAAE 736 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 ++G+ I+AF N EDI+ T F+T D+V+ + R K E+ G G + F Sbjct: 737 LSGDPMLIEAFRNHEDIHAATARVIFDT--DEVTSDMRR--KAKEVNFGVLYGIQPF 789 >gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] Length = 879 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 49/236 (20%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L A DGR+ T G S+TGR S QN+P R+EE Sbjct: 591 IDALDTATGPDGRIHTTYVQTG-SQTGRLSSTDPNLQNIPI--RTEE------------- 634 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 S +R+ G + L+ AD + IE R++A ++G+ I+AF +GED++ Sbjct: 635 ---------SRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHR 685 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 A+ F +V+ R K M L Y GL S+ ++ Sbjct: 686 FVGARVFGVEPAEVTPAMRTKVKAMSYGLVY--------------GLSAFGLSKQLR--- 728 Query: 471 TFEDWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 EQ+E+ L M + + F AV+D L G+ + + + G + + DLT Sbjct: 729 ----IEQSEAKKL-MLEYFARFGAVRDYLRGSVEQARQDGYTETIFGRRRPFPDLT 779 >gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] Length = 875 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 28/152 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L A+ DG++ + TGR S QN+P + E EI Sbjct: 591 LKAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKYEMGREI-------------- 635 Query: 354 ADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R I + +++ AD + IE RVLA I+ + I AF +DI+ T Sbjct: 636 -----------RKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 ++ F PID+V+ R+ K + + Y G Sbjct: 685 ASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIG 716 >gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp] gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp] Length = 931 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G K++ AD + IE R++A +A ++ + AF + D++ T A+ F +++ Sbjct: 692 IRQAFVAPKGYKMMAADYSQIELRIMAHLAKDEGLLDAFRHDLDVHKATAAEVFGVALEE 751 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 752 VTSDQRRKAKAINFGLIY 769 >gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 885 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +AS G LV AD + IE RVLA ++ + + AF +G DI+ T ++ F+ D Sbjct: 645 LIRKAFLASEGGVLVDADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYD 704 Query: 423 KVSKEQRAIGKVMELALGY 441 +V QR K + + Y Sbjct: 705 EVDDRQRYEAKAVNFGIVY 723 >gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 888 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 603 LIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 650 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + +AF +GED++ T A Sbjct: 651 ------------FVVGEGFESLLTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAA 698 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ V E R K M L Y Sbjct: 699 QVFSVEQSAVDAEMRRKIKAMSYGLAY 725 >gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus] Length = 832 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 420 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 479 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 480 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 537 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 538 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 585 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 586 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 627 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 628 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671 >gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243] gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243] Length = 875 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R C + G + AD + IE R+LA ++ ++ + AF +G D + T ++ F P++ Sbjct: 635 IRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVE 694 Query: 423 KVSKEQRAIGKVMELALGY 441 VS E R+ K + + Y Sbjct: 695 DVSPELRSRAKAVNFGIVY 713 >gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15] gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15] Length = 967 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 28/176 (15%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N ++ S GR+ + A+ TGR S QN+P R+EE G Sbjct: 678 NLIAAIAPSTGRVHTSYAL-AATTTGRLSSSDPNLQNIPV--RTEE-----------GRK 723 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I R +A+ G L+ AD + IE R+LA I KAF G DI+ T Sbjct: 724 I-----------RKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMT 772 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ F+TPI+ + R K + + Y G F +A+ G+ + +K+ Sbjct: 773 ASEMFDTPIEGMDPMIRRRAKAINFGIVY--GISAFG-LANQLGISQGEAGAYIKT 825 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 25/130 (19%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R ER EI ++ I Sbjct: 697 TGRLSSTNPNLQNIPVRTERGREIR------------------------KAFIPRDENHV 732 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 LV AD + IE R++A I+ + +AF G+DI+ T AK FN +V+KE R K + Sbjct: 733 LVSADYSQIELRIVAAISADVNMCEAFKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSV 792 Query: 436 ELALGYQGGA 445 + Y GA Sbjct: 793 NFGIIYGQGA 802 >gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 909 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +++DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 624 LIKTIAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRRG---- 671 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 672 ------------FVVGEGYESLMTADYSQIELRVMAHLSEDLGLIEAFTSGEDLHTTVAS 719 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ V E R K M L Y Sbjct: 720 QVFSVERSAVDAEMRRKIKAMSYGLAY 746 >gi|159483045|ref|XP_001699573.1| hypothetical protein CHLREDRAFT_178318 [Chlamydomonas reinhardtii] gi|158272678|gb|EDO98475.1| predicted protein [Chlamydomonas reinhardtii] Length = 1008 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 6/110 (5%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R ++A G L+ AD + +E RV+A I + AF D++ T A+ F P+ V Sbjct: 395 RRALVARPGWLLLAADYSQVELRVIAHITQDPTLASAFRERRDVHAQTAARVFRVPLGAV 454 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 + QR GK + L Y GA +A GL + S + TF D Sbjct: 455 TPAQRQAGKQVNFGLVYGMGA---AKLARDIGLPDNEASDFIH---TFRD 498 >gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] Length = 905 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 28/163 (17%) Query: 282 LASSGSAILKLNT--LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEE 338 LA +A L++ L ++V DGR+ T Q A+ TGR S QN+P R E + Sbjct: 605 LAHRDAAKLRVTVEGLLKSVHPDGRIHTTFQQTIAA-TGRLSSTEPNLQNIPIRTEAGRQ 663 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 I R+ + + L+ AD + IE R++A ++G++ Sbjct: 664 IR------------------------RAFRVGEGFESLLTADYSQIEMRIMAHLSGDEGL 699 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+AF GED++ ++ F V+ E R+ K M L Y Sbjct: 700 IEAFRTGEDLHRYVGSRVFGVEPAGVTAEMRSKVKAMSYGLAY 742 >gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ] Length = 883 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA GK L+ AD + +E R+LA + + I AF G DI+ T ++ P+++ Sbjct: 644 VRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRTASEIMGVPVEE 703 Query: 424 VSKEQRAIGKVMELALGY 441 V R+ K + L Y Sbjct: 704 VGSNDRSKAKAVNFGLMY 721 >gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 833 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 421 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 480 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 481 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 538 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 539 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 586 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 587 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 628 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 629 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 672 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G ++ AD + IE RVLA ++G+D I AF + +DI+ T A+ F P+ Sbjct: 634 IRELFVPGPGYDWIMSADYSQIELRVLAHMSGDDNLIDAFRHNQDIHTHTAAEVFGVPMA 693 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ + RA K + + Y Sbjct: 694 EVTAQMRARAKAVNFGIVY 712 >gi|157875680|ref|XP_001686222.1| mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] gi|24620482|gb|AAN61165.1| DNA polymerase I type A [Leishmania major] gi|68129296|emb|CAJ07836.1| putative mitochondrial DNA polymerase I protein A [Leishmania major strain Friedlin] Length = 931 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 62/141 (43%), Gaps = 14/141 (9%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QNLPR + + A GE D LG R C +A++G L Sbjct: 643 TGRLSCVEPNLQNLPRNGITAAVAGN--DAEEDGEE--DLLGF-----RRCFVATDGCVL 693 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + D IE RVLA + G+ ++A DI+ F VS E+R + K + Sbjct: 694 LSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKK--KPVSTEERRLAKRVV 751 Query: 437 LALGYQGGAKVFKTMASHCGL 457 L Y G KT+A+H G+ Sbjct: 752 FGLLYGAGP---KTLATHMGV 769 >gi|18104426|gb|AAL59547.1| DNA polymerase I [Escherichia coli] gi|18104428|gb|AAL59548.1| DNA polymerase I [Escherichia coli] Length = 114 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 +V AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ EQR K + Sbjct: 9 IVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAI 68 Query: 436 ELALGY 441 L Y Sbjct: 69 NFGLIY 74 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 62/281 (22%), Positives = 112/281 (39%), Gaps = 73/281 (25%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G LV AD + IE R+LA ++ E ++A+ + +D++ T F+ + Sbjct: 703 IRQAFIPEDGYLLVSADYSQIELRILAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--GE 760 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 ++ E+R++GK + + Y GA Q+F++ K T E Sbjct: 761 ITPEERSLGKTINFGVIYGMGA--------------QKFARESKLT--------VEQGRK 798 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 +++ + +A ++ + +K Q + Q G+ + + RR Sbjct: 799 FIEKYHQRYA----------QVFQYLENSKKQAIAQ-------GYVETI-----LGRRRY 836 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQ 603 N +++R R L D+ D LN +QL+R +Q Sbjct: 837 FNFDNPLLKR-----------LRGLSLHDIDLDSLKLNNEEAQLLRSAANAP------IQ 879 Query: 604 AISRDI-------LCEGMKNATKNGYDIVLTVHDEIVSETP 637 S DI L E ++N ++L VHDE+V E P Sbjct: 880 GSSADIIKVAMVKLAEVLQNYRAR---LLLQVHDELVLEVP 917 >gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] Length = 855 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G V D + IE R++A ++ E I AF GEDI+ T A+ F P D+ Sbjct: 616 IRRAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDE 675 Query: 424 VSKEQRAIGKVMELALGY 441 V R+ K + + Y Sbjct: 676 VDDLLRSRAKAVNFGIIY 693 >gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1] Length = 832 Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 420 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 479 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 480 HSFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 537 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 538 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 585 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 586 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 627 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 628 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671 >gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108] gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108] Length = 850 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 610 LIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNIDIHSQTAAEVFGVDIA 669 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688 >gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct] gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct] Length = 829 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 417 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 476 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 477 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 534 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 535 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 582 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 583 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 624 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 625 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 668 >gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65] gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65] Length = 916 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 39/78 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A G LV AD + IE R++A ++G+ + AF NG+DI+ T A+ Sbjct: 677 IRQAFEAPEGYTLVAADYSQIELRIMAHLSGDKGLLDAFKNGKDIHRATAAEIMEVDEAD 736 Query: 424 VSKEQRAIGKVMELALGY 441 V EQR K + L Y Sbjct: 737 VDNEQRRRAKAVNFGLIY 754 >gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 893 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 VR+ G L+ AD + IE R+LA ++G++ I AF G+DI+ T ++ F P+ Sbjct: 652 AVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPL 711 Query: 422 DKVSKEQRAIGKVMELALGY 441 +V+ QR K + + Y Sbjct: 712 AEVTSAQRRSAKAVNFGIVY 731 >gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] Length = 420 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ + D R+ G + TGR S QN+P R E Sbjct: 137 LANYIGDDERIHGKFN-QTITATGRISSTEPNLQNIP--ARVE----------------- 176 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 LG A +R + G V AD + IE RVLA ++ + I A+ +DI+ T + Sbjct: 177 --LGRA---IRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTAS 231 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F PID+VS QR K + + Y Sbjct: 232 EVFGVPIDQVSSIQRRDAKAVNFGIVY 258 >gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 727 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA KKL+ AD + IE R+LA +A + +AF N DI+ ++ F I++ Sbjct: 484 IRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQAFKNSLDIHTLVASEIFGVKIEE 543 Query: 424 VSKEQRAIGKVMELALGY 441 VS R K + ++ Y Sbjct: 544 VSSHMRQHAKTINFSIIY 561 >gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq polymerase 1 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New Orientation For The Structure-Specific Nuclease Domain gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus] Length = 832 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 420 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 479 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 480 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 537 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR S QN+P Sbjct: 538 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIP------ 585 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 586 ---------------VRTPLG---QRIRRAFIAEEGWLLVALDYSQIELRVLAHLSGDEN 627 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 628 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671 >gi|188996542|ref|YP_001930793.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931609|gb|ACD66239.1| DNA-directed DNA polymerase [Sulfurihydrogenibium sp. YO3AOP1] Length = 587 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 75/187 (40%), Gaps = 38/187 (20%) Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ G + GA+ TGR S QN+P+ Sbjct: 323 RVYGEFKQIGAA-TGRMSSLRPNLQNIPKN------------------------------ 351 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 ++ G K +VAD + IE R+ A ++ I AF G+D++ T + D+ Sbjct: 352 LKYLFKPKEGYKFIVADYSQIELRIAAQYTKDENMITAFNEGKDLHKLTASIITGKSYDE 411 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDL-----QQFSQN-VKSTSTFEDWE 476 ++KE+R + K + L Y K A ++ G+ + ++F +N K +F+DW Sbjct: 412 ITKEERQLAKAINFGLIYGMSPKSLVEYAKANYGVSISLQEAKKFHENYFKFYKSFKDWH 471 Query: 477 QAESHHL 483 HL Sbjct: 472 DKVKEHL 478 >gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000] gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000] Length = 982 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 28/176 (15%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 N ++ S GR+ + A+ TGR S QN+P R+EE G Sbjct: 693 NLIAAIAPSTGRVHTSYAL-AATTTGRLSSSDPNLQNIPV--RTEE-----------GRK 738 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I R +A+ G L+ AD + IE R+LA I KAF G DI+ T Sbjct: 739 I-----------RKAFVAAPGHVLISADYSQIELRLLAHIGDIPQLKKAFQEGLDIHAMT 787 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ F+TPI+ + R K + + Y G F +A+ G+ + +K+ Sbjct: 788 ASEMFDTPIEGMDPMIRRRAKAINFGIVY--GISAFG-LANQLGISQGEAGAYIKT 840 >gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411] gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411] Length = 801 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 40/81 (49%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R ++A G KL+ +D + IE RVLA ++ + I+ F N EDI+ T K F Sbjct: 564 IRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDIHTQTAVKIFGVHPSM 623 Query: 424 VSKEQRAIGKVMELALGYQGG 444 V R + K + + Y G Sbjct: 624 VDHHLRRMAKTINFGIIYGMG 644 >gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1016 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I++ KL+ AD + IE RVLA +A KAF +G DI+ T ++ F P++ Sbjct: 771 IRTAFISTPRHKLISADYSQIELRVLAHVAEIPQLTKAFEDGVDIHAMTASEMFGVPVEG 830 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 831 MPGEVRRRAKAINFGIIY 848 >gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 868 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 30/156 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KLN+ LS V D R+ G+ Q + TGR S QN+P Sbjct: 576 KLNSTYAEGLSNYVGEDQRIHGSFQ-QMVTATGRLSSTEPNLQNIP-------------- 620 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 I +G RS I G + AD + +E R+LA ++ ++ I+A+ Sbjct: 621 -------IRTEMG---RVFRSVFIPKEGSVFLDADYSQVELRLLASLSKDEKLIEAYRKD 670 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ T ++ F+ P+++V+ E R K + + Y Sbjct: 671 ADIHRVTASEVFHVPLEEVTPELRRNAKAVNFGIVY 706 >gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 69/284 (24%), Positives = 110/284 (38%), Gaps = 54/284 (19%) Query: 180 LSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L ER LWL + + G R+D+ + L +A+E +L+ ++ +L Sbjct: 420 LEGEERLLWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAG 479 Query: 230 GIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----------HSNITQLAKDLI 278 +SR L LF G+ + +E T K S H + ++ + Sbjct: 480 HPFNLNSRDQ--LERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVEKILQYRE 537 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L +L S+ ++ L + + GRL A+ TGR C QN+P Sbjct: 538 LTKLKST-----YIDPLPDLIHPRTGRLHTRFN-QTATATGRLCCCDPNLQNIP------ 585 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + PLG +R IA G LV D + IE RVLA ++G++ Sbjct: 586 ---------------VRTPLG---QRIRRGFIAEEGWLLVALDYSQIELRVLAHLSGDEN 627 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 I+ F G DI+ T + F P + V R K + + Y Sbjct: 628 LIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLY 671 >gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] Length = 920 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 27/140 (19%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR S QN+P R E EI Sbjct: 644 GRIHASFN-QTVTATGRLSSSEPNLQNIPVRGEEGREI---------------------- 680 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 R+ I G L+ AD + IE R+LA + + ++AF N +DI+ T K ++ Sbjct: 681 ---RNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKNNDDIHRKTAMKIYSVSK 737 Query: 422 DKVSKEQRAIGKVMELALGY 441 + V+ R I K++ ++ Y Sbjct: 738 EHVTASMRNIAKIINFSIIY 757 >gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122] gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122] Length = 905 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 55/104 (52%), Gaps = 4/104 (3%) Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R C + G + AD + IE R+LA ++ ++ + AF +G D + +T A+ F P++ Sbjct: 665 IRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHASTAARVFGVPLE 724 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 +V+ R+ K + + Y G + F +A + G+ ++ + + Sbjct: 725 EVTPSMRSRAKAVNFGIVY--GQQAFG-LAQNLGIGFKEAQEMI 765 >gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] Length = 912 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ T G + TGR S QN+P Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R +A GK L+ D + +E RVL ++ ++ Sbjct: 664 --VKTDDGIK---------------IREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENL 706 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + + VS+EQR I K++ ++ Y G AK K Sbjct: 707 IEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + ++FE E E H + ++ Q Sbjct: 767 DASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 827 AVNTVIQGTAAEVLKKVM 844 >gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27] gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27] Length = 912 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 105/258 (40%), Gaps = 56/258 (21%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 LN+L ++ ++TL V + R+ T G + TGR S QN+P Sbjct: 617 LNKLKTT-----YVDTLPLLVDENSRIHTTFNQIGTA-TGRLSSSDPNLQNIP------- 663 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +T + +R +A GK L+ D + +E RVL ++ ++ Sbjct: 664 --VKTDDGIK---------------IREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENL 706 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+A+ +D++ T + FN + + VS+EQR I K++ ++ Y G AK K Sbjct: 707 IEAYREEKDLHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVK 766 Query: 454 HCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQYPEF 492 ++++ + ++FE E E H + ++ Q Sbjct: 767 DASEYIKKYFEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERM 826 Query: 493 AVKDKLIGTACELVKKAW 510 AV + GTA E++KK Sbjct: 827 AVNTVIQGTAAEVLKKVM 844 >gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1] gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1] Length = 906 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 24/152 (15%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + + L + + +DGR+ + A+ TGR S QN+P + T +A+ R Sbjct: 616 VTVEGLVKTIGADGRVHTSFSQIVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRR 667 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 G ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ Sbjct: 668 G----------------FVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLH 711 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F +V E R K M L Y Sbjct: 712 TTVASQVFGVERGEVDPEMRRKIKAMSYGLAY 743 >gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008] gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008] Length = 873 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374 TGR S QN+P R E+ EI R+ G Sbjct: 610 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 644 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ D V+ E+R+ K Sbjct: 645 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQDDVTSEERSHAKA 704 Query: 435 MELALGY 441 + + Y Sbjct: 705 INFGIIY 711 >gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2] gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2] Length = 1013 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+KL+ AD + IE R+LA IA AFA DI+ T ++ F P++ Sbjct: 770 IRKAFIAPPGRKLISADYSQIELRLLAHIADISQLRAAFAENLDIHAMTASEMFGVPVEG 829 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 830 MPPEVRRRAKAINFGIIY 847 >gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] Length = 909 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 61/147 (41%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ + D R+ G + TGR S QN+P I Sbjct: 626 LANFIQDDQRIHGKFN-QTITATGRISSTEPNLQNIP---------------------IR 663 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 LG A +R + G + AD + IE RVLA ++ ++ I A+ +DI+ T + Sbjct: 664 MELGRA---IRKVFLPEEGYIFLDADYSQIELRVLAHLSQDEKLIHAYEENQDIHARTAS 720 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F P+D+V+ QR K + + Y Sbjct: 721 EVFGIPMDEVTSTQRRDAKAVNFGIIY 747 >gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043] gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043] Length = 891 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 28/154 (18%) Query: 290 LKLNTLSEAVSSDGRLRGT-LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + + L ++VS DGR+ T LQ A TGR S QN+P R+EE Sbjct: 601 VTVEGLQKSVSDDGRIHTTYLQTIAA--TGRLSSTEPNLQNVPI--RTEE---------- 646 Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + +G L+ AD + IE RV+A ++G+ I+AF +GED Sbjct: 647 ------------GRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSGED 694 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ ++ F + V+ R+ K M L Y Sbjct: 695 LHRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAY 728 >gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae] Length = 920 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 27/140 (19%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR S QN+P R E EI Sbjct: 644 GRIHASFN-QTVTATGRLSSSEPNLQNIPVRGEEGREI---------------------- 680 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 R+ I G L+ AD + IE R+LA + + ++AF N +DI+ T K ++ Sbjct: 681 ---RNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDIHRKTAMKIYSVSK 737 Query: 422 DKVSKEQRAIGKVMELALGY 441 + V+ R I K++ ++ Y Sbjct: 738 EHVTASMRNIAKIINFSIIY 757 >gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE] gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE] Length = 903 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 618 LIKTIGQDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 665 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 666 ------------FVVGEGFETLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 713 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 714 QVFGVDKSAVDAEMRRKIKAMSYGLAY 740 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473 + E R++ K + L Y G +KT++ + ++ ++++ +N S FE Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVK 761 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NEAKQNGFIVTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 +L++ K+L E ++Q Sbjct: 814 --MLEINKELNEDKKLILQ 830 >gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 885 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R ++S G LV AD + IE RVLA I+ ++ I AF N +DI+ T AK F + Sbjct: 645 LIRKAFLSSEGCVLVDADYSQIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFE 704 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ R+ K + + Y Sbjct: 705 DVTPSLRSRAKAVNFGIVY 723 >gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] Length = 976 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I L K L++L S+ L N ++E GR+ A+ TGR S Sbjct: 653 HEIIQHLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707 Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R E S I R + KL+ AD + IE Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A E+ I AF +DI+ T F +++S ++R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGI 800 Query: 446 KVF 448 K F Sbjct: 801 KKF 803 >gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002] gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002] Length = 850 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 610 LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688 >gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2] gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2] Length = 1008 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 5/141 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G KLV AD + IE R+LA IA +AF + DI+ T ++ F P+ Sbjct: 765 IRRAFIAEKGHKLVSADYSQIELRLLAEIADIPVLKQAFHDKLDIHAMTASEMFGVPVKD 824 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 + E R K + + Y G F +A+ G+ ++ +K FE + ++ Sbjct: 825 MPAEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK--KYFERFPGIRAYMD 879 Query: 484 WMQDQYPEFAVKDKLIGTACE 504 +D E + L G C Sbjct: 880 ATRDFCREHGYVETLFGRKCH 900 >gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 610 LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688 >gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 893 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 VR+ G L+ AD + IE R+LA ++G++ I AF G+DI+ T ++ F P+ Sbjct: 652 AVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASEVFGVPL 711 Query: 422 DKVSKEQRAIGKVMELALGY 441 +V+ QR K + + Y Sbjct: 712 AEVTSAQRRSAKAVNFGIVY 731 >gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] Length = 921 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G AD + IE R++A ++ + I+AF GEDI+ T A+ F + + Sbjct: 682 IRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEAFKKGEDIHAATAARIFKKDLSE 741 Query: 424 VSKEQRAIGKVMELALGY 441 VS+++R K + Y Sbjct: 742 VSRDERRKAKTANFGIIY 759 >gi|238909183|ref|YP_002939650.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238873420|gb|ACR73129.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 724 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 44/155 (28%) Query: 308 TLQFYGASRTGRWSGC----VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 T YGA +TGR+S QN+P E+S Sbjct: 428 TYNQYGA-KTGRFSSSDTVTKINLQNIPSHEKS--------------------------- 459 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--- 420 +R A +G K V D + IE RVL++++G++ +A+ G+D+Y +K + P Sbjct: 460 IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYED 519 Query: 421 ---------IDKVSKEQRAIGKVMELALGYQGGAK 446 ++ K +R K + L + Y+ GAK Sbjct: 520 CREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAK 554 >gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14] Length = 871 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G V AD + IE R+LA +G++ I+A+ DI+ T ++ F+ P D+ Sbjct: 632 IRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDE 691 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + + Y Sbjct: 692 VTDLQRRNAKAVNFGIVY 709 >gi|291526285|emb|CBK91872.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium rectale DSM 17629] Length = 724 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 44/155 (28%) Query: 308 TLQFYGASRTGRWSGC----VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 T YGA +TGR+S QN+P E+S Sbjct: 428 TYNQYGA-KTGRFSSSDTVTKINLQNIPSHEKS--------------------------- 459 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--- 420 +R A +G K V D + IE RVL++++G++ +A+ G+D+Y +K + P Sbjct: 460 IRKIFRARDGYKFVGGDFSQIEPRVLSYVSGDEAMQEAYREGKDLYAIMGSKVYGVPYED 519 Query: 421 ---------IDKVSKEQRAIGKVMELALGYQGGAK 446 ++ K +R K + L + Y+ GAK Sbjct: 520 CREFYPDGTVNAEGKHRRTTMKSVLLGIMYERGAK 554 >gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118] gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118] Length = 957 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G + AD + IE R++A I+G+ + AF +G D++ T ++ F + Sbjct: 718 VREAFVAPPGSVIASADYSQIELRIMAHISGDAALLLAFHDGIDVHRATASEIFGVDRAQ 777 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR KV+ L Y Sbjct: 778 VTSEQRRYAKVINFGLIY 795 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473 + E R++ K + L Y G +KT++ + ++ ++++ +N S FE Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEANLAKSYIEKYFENFTSIKKYFEKVK 761 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NEAKQNGFIVTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 +L++ K+L E ++Q Sbjct: 814 --MLEINKELNEDKKLILQ 830 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 72/311 (23%), Positives = 128/311 (41%), Gaps = 61/311 (19%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLV 206 +L EY D + T +L ++ PL + L L + I G +ID+D++ Sbjct: 493 ELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVL 552 Query: 207 LKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEG 259 + I ++ + L+ I VK I S +Q L LF +D G Sbjct: 553 SVFSKTIEEDVRNLEASIYEKAGVKFN---IASPKQ---LGEVLFDKLQLDPKAKKTKTG 606 Query: 260 TLKS----ILSHSNITQLAKDLI----LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 K+ +L+ +N + + +D++ L +L S+ ++ L ++ + L T Sbjct: 607 QYKTGEDVLLTLANKSDIVQDILDFRQLQKLKST-----YVDALPSLINPNTGLIHTSYN 661 Query: 312 YGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P R ER E+ ++ I Sbjct: 662 QAVAATGRLSSTNPNLQNIPIRTERGREVR------------------------KAFIPR 697 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 S ++ AD + IE R++A ++ + ++AF G DI+ T AK + +D+VS +QR Sbjct: 698 SENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSSDQRR 757 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 758 NAKAVNFGIIY 768 >gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] Length = 920 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G AD + IE RV+A ++G+ I+AF G DI+ T AK + ++ Sbjct: 681 IRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAHMIEAFREGYDIHAATAAKIYGRAVED 740 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 V++++R K + Y G VF +A +D + Q Sbjct: 741 VTRDERTKAKRANFGIIY--GITVF-GLAERLDIDRNEAKQ 778 >gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR] gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR] Length = 886 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G ++ AD + IE R+LA ++G++ ++AF N EDI+ T A+ F ++ Sbjct: 642 IRKAFVPSEPGWIILSADYSQIELRILAHLSGDERFVQAFRNDEDIHTRTAAEVFGVSLE 701 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E R+ K + + Y Sbjct: 702 EVTGEMRSRAKAVNFGIVY 720 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 44/78 (56%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+ L+ AD + IE R++A ++ ++ + AF +G+D++ T A+ ++ Sbjct: 683 IRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEALLDAFIHGQDVHRRTAAEVLGIALED 742 Query: 424 VSKEQRAIGKVMELALGY 441 V+ +QR K + L Y Sbjct: 743 VTNDQRRQAKAVNFGLLY 760 >gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 610 LIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIA 669 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K + + Y Sbjct: 670 DVTPEMRSQAKAVNFGIVY 688 >gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] Length = 924 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G L+ AD + IE R++A +AG +AFA G+DI+ T ++ F P++ Sbjct: 678 IREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQAFAEGKDIHAITASQVFGVPVEG 737 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 738 MDPMVRRQAKAINFGIIY 755 >gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] Length = 908 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+V T +K F T + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHVETASKLFKTEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21] gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21] Length = 944 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 76/311 (24%), Positives = 122/311 (39%), Gaps = 74/311 (23%) Query: 161 EYCKRDVEAT---RELFKRLIPLSDG-------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210 EY D + T + KR +P+ G +R L + + G ++D + KL Sbjct: 511 EYAAEDADVTWRLHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLAKLS 570 Query: 211 ELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 E A E K+L+ +I ++ + + S +Q L LF + Sbjct: 571 EEFATETKRLEGEIHEIAGQEFTVGSPKQ---LGEILF-----------DKLGFKGGKKG 616 Query: 269 NITQLAKDL-ILNRLASSGSAI------------LK---LNTLSEAVSS-DGRLRGTLQF 311 Q + D +L +L+ G+ I LK + L EA++ GR+ + Sbjct: 617 KSGQYSTDQSVLEKLSGDGAEIAAKVLEWRQLAKLKSTYTDALQEAINPRSGRVHTSYSL 676 Query: 312 YGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 GA +TGR S QN+P R E +I R +A Sbjct: 677 VGA-QTGRLSSTDPNLQNIPIRTEIGRQI-------------------------RDAFVA 710 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G L+ AD + IE R+ A +A +AFA GEDI+ T + F +V+++ RA Sbjct: 711 EEGNVLLAADYSQIELRLAAHMADVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRA 766 Query: 431 IGKVMELALGY 441 K + A+ Y Sbjct: 767 RAKTINFAILY 777 >gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus] Length = 834 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 64/252 (25%), Positives = 103/252 (40%), Gaps = 36/252 (14%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDM 256 G R+D+ + L +A+E ++L+E++ +L +SR L LF + + Sbjct: 450 GVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPFNLNSRDQ--LERVLFDELRLPALGK 507 Query: 257 SEGTLKSILSHSNITQL--AKDLILNRLASSGSAILKLNTLSEAVSS-----DGRLRGTL 309 ++ T K S + + L A ++ L LK NT + + S GRL Sbjct: 508 TQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLK-NTYVDPLPSLVHPRTGRLHTRF 566 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A+ TGR S QN+P + PLG +R + Sbjct: 567 N-QTATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFV 601 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V R Sbjct: 602 AEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMR 661 Query: 430 AIGKVMELALGY 441 K + + Y Sbjct: 662 RAAKTVNFGVLY 673 >gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] Length = 1043 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+KLV AD + IE R+LA IA AFA DI+ T ++ F P++ Sbjct: 800 IRRAFIAPPGRKLVSADYSQIELRLLAHIADIKSLKNAFAENLDIHAMTASEMFGVPVEG 859 Query: 424 VSKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 860 MPSEIRRRAKAINFGIIY 877 >gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] Length = 955 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%) Query: 55 SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L ++L+ E + H +L L +D+P L + + SLK A Sbjct: 425 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLTQPDFHADSLKQA- 483 Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A +F + H T+ E+ F ++ P E+ RD+ R Sbjct: 484 -AEHFLDLHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 527 Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216 L L P+ D WL+ + G ++D ++ +++ A E Sbjct: 528 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 587 Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 +K L ED+ +K T S T A + + +D + + Sbjct: 588 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 646 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316 G L ++L H I +L + + TL +A +SD R+ T + A+ Sbjct: 647 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 690 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P NR A +R + G + Sbjct: 691 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 726 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++G++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 727 LMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786 Query: 436 ELALGY 441 L Y Sbjct: 787 SYGLAY 792 >gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW] gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW] Length = 987 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 25/171 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G L+ D + IE R++A +AG +AF +G DI+ T ++ F P+D+ Sbjct: 748 IRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALRRAFHDGIDIHAMTASQVFGVPLDQ 807 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 ++ E R K + + Y G + G ++Q+ + T+ + +A Sbjct: 808 MTSEIRRKAKAINFGIIYGISGFGLGRQLGITPGEAGAFIRQYFERFPELQTYMETTKAF 867 Query: 480 SHH-----------LWMQD---------QYPEF-AVKDKLIGTACELVKKA 509 + W+Q Y E A+ + GTA +++K+A Sbjct: 868 AREHGYVTTLLGRRCWIQGIREKAPARRAYAERQAINAPIQGTAADIIKRA 918 >gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 891 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + + G L+ AD + +E R+LA +A E ++FA+GEDI+ T ++ F ++ Sbjct: 652 IREAFVPAEGNLLLAADYSQVELRILAHMADEPALKESFAHGEDIHARTASEIFGVFLEL 711 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E R K + + Y Sbjct: 712 VTPEMRRQAKTINFGVLY 729 >gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4] gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4] Length = 949 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 28/133 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R + +EI R I D +DC+ Sbjct: 687 TGRLSSTNPNLQNIPIRDAQGKEI---------RKAFIPD-----ADCL----------- 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 AD + IE R++A ++G+ ++AF +G DI+ T AK + P+++V+ + R K Sbjct: 722 FFSADYSQIELRIMAHLSGDKNMLEAFNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTA 781 Query: 436 ELALGYQGGAKVF 448 + Y G VF Sbjct: 782 NFGIIY--GISVF 792 >gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] Length = 986 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +L+ AD + IE R+L ++GE+ +AF NG+D++ T + D+ Sbjct: 731 IRKAFLPQENWQLLSADYSQIELRILTHLSGEEVLQEAFRNGDDVHALTARLLLDK--DE 788 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 VS ++R +GK + + Y GA+ F Sbjct: 789 VSSDERRLGKTINFGVIYGMGAQRF 813 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473 + E R++ K + L Y G +KT++ + ++ ++++ +N S FE Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NEAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 +L++ K+L E ++Q Sbjct: 814 --MLEINKELNEDKKLILQ 830 >gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 865 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 25/147 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L++ + +DG++ TL ++TGR S QN+ R+EE +G Sbjct: 582 LAKHILADGKIH-TLFNQIQTQTGRLSSSEPNLQNISV--RNEE---------GKG---- 625 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R +AS G L+ AD + IE R+LA +A E+ I AF + DI+ T Sbjct: 626 ---------IRKAFVASEGHVLLSADYSQIELRMLAHMADEEQMIDAFNHDIDIHTKTAM 676 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ D+V R K + + Y Sbjct: 677 QIFDVAHDEVDANMRRSAKTVNFGIVY 703 >gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] Length = 1060 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G +L+ AD + IE R+LA +A KAF +G DI+ T + F P+ + Sbjct: 817 IRRAFVAAPGNRLISADYSQIELRLLAHMADIPELRKAFEDGIDIHAATASAMFGVPLKE 876 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ ++ S +K Sbjct: 877 MTPDLRRRAKTINFGIIY--GISAF-GLADRLGIGREEASAFIK 917 >gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] Length = 918 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 4/99 (4%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R A + + L++ AD + IE R+LA ++ ++ I+AF DI+ AK FN I+ Sbjct: 675 IRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFKQDLDIHKRMAAKIFNVDIE 734 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 KV+ +QR K + + Y G + ++ G+ L + Sbjct: 735 KVTPDQRRAAKTINFGILYGMGQ---RKLSRELGISLNE 770 >gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605] gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605] Length = 986 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 72/306 (23%), Positives = 119/306 (38%), Gaps = 48/306 (15%) Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209 YC DV TR L +L+PL + E+ L + + G RID+ + L Sbjct: 537 YCGMDVHVTRRLALLLRHQLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYLQGL 596 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 E + ++L+ D K G+ + L LF G+D + Sbjct: 597 SEEMGSTLQQLESD-AKAAAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATV 655 Query: 270 ITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGC 323 + +L D L+L+ S ++ L + V ++ GR+ + TGR S Sbjct: 656 LEKLGNDHPVVPLVLDHRVLSKLKSTYIDALPQLVEAETGRVHTDFN-QAVTATGRLSSS 714 Query: 324 VFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P R E S I R + G L+ AD + Sbjct: 715 NPNLQNIPVRTEYSRRI-------------------------RKAFLPQEGWTLLSADYS 749 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+L ++GE +A+ G+D++ T + D+VS ++R +GK + + Y Sbjct: 750 QIELRILTHLSGEKVLQEAYRGGDDVHALTARLLLDK--DEVSPDERRLGKTINFGVIYG 807 Query: 443 GGAKVF 448 GA+ F Sbjct: 808 MGAQRF 813 >gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] Length = 1032 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G +LV AD + IE R+L+ +A KAF +G DI+ T ++ F P++ Sbjct: 789 IRRAFVATPGHRLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMTASEMFGVPVEG 848 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + R K + + Y G F +A+ G+ ++ +K Sbjct: 849 MPSDIRRRAKAINFGIIY--GISAFG-LANQLGIPREEAGAYIK 889 >gi|1097211|prf||2113329A DNA polymerase Length = 834 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 24/128 (18%) Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A+ TGR S QN+P + PLG +R +A G Sbjct: 570 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFVAEAG 605 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V R K Sbjct: 606 WALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAK 665 Query: 434 VMELALGY 441 + + Y Sbjct: 666 TVNFGVLY 673 >gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] Length = 963 Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 56/101 (55%), Gaps = 5/101 (4%) Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 +++ AD + IE R++A +G+ +AF G DI+ TT +K F P+++V+ + R K+ Sbjct: 735 QILSADYSQIELRIMAAFSGDASMTEAFNQGRDIHATTASKVFQVPLEEVTSDMRRKSKM 794 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 + + Y G F +A G+ + S+ ++ + FE++ Sbjct: 795 VNFGIIY--GISAFG-LAQRLGIPRGEASEIIR--AYFEEF 830 >gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] Length = 921 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G AD + IE RV+A ++ + IK F+ G+D++ T A + PI++ Sbjct: 682 IRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMIKVFSEGKDLHAATAANIYKKPIEE 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V++++R K + Y G VF Sbjct: 742 VTRDERTKSKRANFGIIY--GITVF 764 >gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus] gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB] Length = 834 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 24/128 (18%) Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A+ TGR S QN+P + PLG +R +A G Sbjct: 570 ATATGRLSSSDPNLQNIP---------------------VRTPLG---QRIRRAFVAEAG 605 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 LV D + IE RVLA ++G++ I+ F G+DI+ T + F P + V R K Sbjct: 606 WALVALDYSQIELRVLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAK 665 Query: 434 VMELALGY 441 + + Y Sbjct: 666 TVNFGVLY 673 >gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756] gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756] Length = 966 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA GK L+ AD + IE R+LA I +AF G DI+ T ++ F+TPI+ Sbjct: 723 IRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKRAFQEGLDIHAMTASEMFDTPIEG 782 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + R K + + Y G F +A+ G+ + +K+ Sbjct: 783 MDPMIRRRAKAINFGIVY--GISAFG-LANQLGIPQGEAGAYIKT 824 >gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] Length = 931 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 24/129 (18%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P RG+ D +R+ IA G L Sbjct: 668 TGRLSSSEPNLQNIPA----------------RGDEGKD--------IRNTFIAEKGNVL 703 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R+LA + + ++AF N +DI+ T K ++ + V+ R K++ Sbjct: 704 IAADYSQIELRLLAHFSNDPVLVEAFKNNDDIHRKTAMKIYSVSKEHVTPSMRNTAKIIN 763 Query: 437 LALGYQGGA 445 ++ Y A Sbjct: 764 FSIIYGKTA 772 >gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 849 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 29/166 (17%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ + TGR S QN+P RS+E Sbjct: 573 DGRIHTNFS-TTVTATGRLSSSSPNLQNIPI--RSKE----------------------G 607 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + +R IA G K++ AD + IE R+LA +A +AFANG+DI+ T + F Sbjct: 608 NLIRQTFIAPKGYKIISADYSQIELRLLAHVANVTAFKEAFANGKDIHGITAGQVFGVQK 667 Query: 422 D-KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D +V ++ R K + + Y G F +A G+ +++ ++ + Sbjct: 668 DMEVDEQLRRKAKSINFGIMY--GISQF-GLAKRLGITIEEAAEYI 710 >gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36] gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36] Length = 951 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 5/118 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G + AD + IE R++A ++ + I+AF +G DI+ T AK + I+ Sbjct: 712 IRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLSGHDIHAATAAKIYKIDIND 771 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 V+ + R K + Y G VF +A G+ Q+ + + FE + Q + + Sbjct: 772 VTADMRRKAKTANFGIIY--GISVF-GLAERMGVSRQEAKELID--GYFETYPQVKEY 824 >gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4] gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4] Length = 868 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 112/269 (41%), Gaps = 56/269 (20%) Query: 199 YRIDLDLVLKLQEL------IAQER-----KKLDEDIVKLTDGIIRSSRQTYALR----- 242 Y ++L L L ++ +++ER K+L E + +L++ I + + + + L Sbjct: 463 YSVELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKLAGERFNLNSPRQL 522 Query: 243 -MYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 LF G+ V ++ L+ + H + AK L+ +LA S + Sbjct: 523 GYILFEKLGLKPVKKTKTGYSTDASVLEKLAEHEIV---AKVLVYRQLAKLKSTYT--DA 577 Query: 295 LSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L E + + GRL T G + TGR + QN+P + Sbjct: 578 LPELIDPATGRLHTTFLQAGTA-TGRLASAEPNLQNIP---------------------V 615 Query: 354 ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 D LG +R +A L+ AD + IE RVLA ++ + +AF GEDI+ T Sbjct: 616 RDSLG---RRIRQAFVAEGPDYVLLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHART 672 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ F +V+ E RA KV+ + Y Sbjct: 673 AAEIFGVSPQEVTPEMRAKAKVVNFGIVY 701 >gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 694 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 67/152 (44%), Gaps = 24/152 (15%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + + L + +++DGR+ T A+ TGR S QN+P + T +A+ R Sbjct: 404 VTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRR 455 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 G ++ + L+ AD + IE RV+A ++ + I+AF +GED++ Sbjct: 456 G----------------FVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLH 499 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F V E R K M L Y Sbjct: 500 TTAASQVFAVEPGAVDAEMRRKIKAMSYGLAY 531 >gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup] gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup] Length = 969 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G L+ AD + IE R+LA IA +AFA G DI+ T ++ F I+ Sbjct: 726 IRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEG 785 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + R K + + Y G F +A+ G+ Q+ + ++ Sbjct: 786 MHSDIRRRAKAINFGIIY--GISAF-GLANQLGISRQEAGRYIQ 826 >gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] Length = 920 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C + G AD + IE R++A ++G++ I+AF G DI+ T AK ++ I Sbjct: 681 IRKCFVPEPGCLFFSADYSQIELRIMAHLSGDENMIEAFREGFDIHAATAAKIWHKQIAD 740 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ E+R K + Y G + +A G+D Sbjct: 741 VTPEERKKAKQANFGIIY--GITTY-GLAQRMGID 772 >gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2] Length = 892 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R ++ G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGVVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] Length = 901 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 79/309 (25%), Positives = 132/309 (42%), Gaps = 49/309 (15%) Query: 145 YDCTRAN-HVQAWQLFGEYCKRD--VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 Y C A+ +Q +Q F + + ++A E +R PL++ LW ++ +G +I Sbjct: 468 YACEDADITLQLYQFFQQKLASEPTLQALYENVER--PLAEI---LWAMEH----QGVKI 518 Query: 202 DLD-LVLKLQELIAQERKKLDEDIVKLTDGIIR--SSRQTYAL---RMYLFLI--TGIDL 253 D L ++ QEL AQ K L + +L G+ S +Q + R+ L +I T Sbjct: 519 AGDKLAVQSQELAAQ-LKTLQKQAYQLAGGVFNLDSPKQLQEILFERLALPVIHKTPTGQ 577 Query: 254 VDMSEGTLKSILSHSNITQLA-KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 +E L+ + + + Q A ++ILN A + L E + D + T Sbjct: 578 ASTNEEVLQKL---AELRQSALPEIILNYRALGKLKSTYTDKLPELIDPDSKRVHTSYHQ 634 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P RS+E G I R IA Sbjct: 635 AVTSTGRLSSSDPNLQNIPI--RSDE-----------GRRI-----------RQAFIAEE 670 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G ++ AD + IE R++A ++ ++ +AF +DI+ T A+ F+ + V + QR Sbjct: 671 GYSILAADYSQIELRIMAHLSQDERLQRAFQLQQDIHTATAAELFSVAPEAVDRNQRRDA 730 Query: 433 KVMELALGY 441 K + L Y Sbjct: 731 KAINFGLIY 739 >gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476] gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476] Length = 968 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G L+ AD + IE R+LA IA +AFA G DI+ T ++ F I+ Sbjct: 725 IRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAFAKGHDIHAITASQMFGVAIEG 784 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + R K + + Y G F +A+ G+ Q+ + ++ Sbjct: 785 MHSDIRRRAKAINFGIIY--GISAF-GLANQLGISRQEAGRYIQ 825 >gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] Length = 976 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I L K +++L S+ L N ++E GR+ A+ TGR S Sbjct: 653 HEIIQHLIKHRTISKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707 Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R E S I R + KL+ AD + IE Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A E+ I AF +DI+ T F +++S ++R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGI 800 Query: 446 KVF 448 K F Sbjct: 801 KKF 803 >gi|331088918|ref|ZP_08337827.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] gi|330406516|gb|EGG86024.1| hypothetical protein HMPREF1025_01410 [Lachnospiraceae bacterium 3_1_46FAA] Length = 723 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/155 (25%), Positives = 62/155 (40%), Gaps = 44/155 (28%) Query: 308 TLQFYGASRTGRWSG----CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 T YGA TGR+S QN+P E+S Sbjct: 429 TFNQYGAV-TGRFSSSDTVTKINLQNIPSHEKS--------------------------- 460 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP--- 420 +R A +G KLV D + IE RVLA+ +G++ A+ G+D+Y +K + P Sbjct: 461 IRKIFKARDGYKLVGGDFSQIEPRVLAYFSGDEAMQNAYKEGKDLYAIMGSKVYGVPYED 520 Query: 421 ---------IDKVSKEQRAIGKVMELALGYQGGAK 446 ++ K +R K + L + Y+ GA+ Sbjct: 521 CREFYPDGTVNPEGKHRRTTMKSVLLGIMYERGAQ 555 >gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium] Length = 898 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 25/126 (19%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R E EI ++ I +S Sbjct: 635 TGRISSTEPNLQNIPVRHEMGREIR------------------------KAFIPSSENAV 670 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 V AD + IE RVLA I G++ I AF GEDI+ T + F+ + V+ E R K + Sbjct: 671 FVDADYSQIELRVLAHITGDEALINAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAV 730 Query: 436 ELALGY 441 + Y Sbjct: 731 NFGIVY 736 >gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 889 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G++ I+AF GED++ A+ F + Sbjct: 648 IREVFVVGKGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRFVGARVFGVEPE 707 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R+ K M L Y Sbjct: 708 DVTAEMRSKVKAMSYGLAY 726 >gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 43/78 (55%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ + + AD + +E RVLA I ++ + AF +DI+ T A+ F+ P+++ Sbjct: 658 LRKVFVANENHQFIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEE 717 Query: 424 VSKEQRAIGKVMELALGY 441 V+ R+ K + + Y Sbjct: 718 VTDSMRSSAKAVNFGIVY 735 >gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] Length = 871 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L+ + DGR+ G + TGR S QN+P R E L R Sbjct: 588 LANFIQEDGRIHGKFN-QTVTATGRISSTEPNLQNIPVRME------------LGR---- 630 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + V AD + IE R+LA +G++ I A+ DI+ T Sbjct: 631 ---------LIRKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITA 681 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F+ P D+V+ +R K + + Y Sbjct: 682 SQVFHIPFDEVTDLERRNAKAVNFGIVY 709 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473 + E R++ K + L Y G +KT++ + ++ ++++ +N S FE Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NEAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 +L++ K+L E ++Q Sbjct: 814 --MLEINKELNEDKKLILQ 830 >gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246] Length = 1454 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 60/146 (41%), Gaps = 30/146 (20%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 V+ DGR+ + GA +GR S Q LPR R Sbjct: 1188 VADDGRVYAAWKQVGAGASGRMSCKDPNLQQLPRDPR----------------------- 1224 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 R C + G+ LV AD + IE R+ A I G+ + A+ GED++ TT A+A Sbjct: 1225 -----FRRCFVTPPGRVLVKADYSQIELRIAAKITGDKRMLDAYQKGEDLHTTT-ARAVL 1278 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG 444 D V+K R + K + L Y G Sbjct: 1279 GKTD-VTKADRQLSKSLNFGLLYGMG 1303 >gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8] gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8] Length = 949 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 33/255 (12%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 T+ G R+D D++ ++ + + ++E++ +L G + T L LF + Sbjct: 559 TMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELA-GEEFNINSTQQLGEILFEKLDLP 617 Query: 253 LVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307 +V + T +S+L + L+L+ ++ L++L E V + GRL Sbjct: 618 VVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRLHT 677 Query: 308 TLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 + + TGR S QN+P R E +I R Sbjct: 678 SFN-QTRTATGRLSSSDPNLQNIPIRTEMGRQI-------------------------RR 711 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + +G L+ AD A IE R+LA ++G+D F G DI+ A+ + + V+ Sbjct: 712 AFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTP 771 Query: 427 EQRAIGKVMELALGY 441 EQR+ K + + Y Sbjct: 772 EQRSKAKEVNYGIPY 786 >gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46] gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46] Length = 1016 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +L+ AD + IE R+LA +A +AFA+G DI+ T + F P+ + Sbjct: 773 IRQAFVADAGHQLISADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGE 832 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ + R K + + Y G F +A G+ + S +K Sbjct: 833 MTPDLRRRAKTINFGIIY--GISAFG-LADRLGIPQGEASAFIK 873 >gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498] Length = 968 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +AS G L+ AD + IE R+LA +A +AF G+DI+ T ++ F ++ Sbjct: 725 IRKAFVASKGYLLLSADYSQIELRILAHVADITALKEAFTKGQDIHTMTASQMFGVAVEG 784 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK----STSTFEDWEQAE 479 ++ E R K + + Y G F +AS G+ ++ S ++ ED+ + Sbjct: 785 MTSEIRRRAKAINFGIIY--GISPF-GLASQLGISRKEASDYIQLYFERFPGIEDYMERT 841 Query: 480 S----HHLWMQD------QYPEF--------------AVKDKLIGTACELVKKA 509 HH +++ YPE A+ + G+A +++++A Sbjct: 842 KIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERAAINAPIQGSAADIIRRA 895 >gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] Length = 924 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 39/78 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + L+ AD IE R+LA +A KAF N EDI+ T ++ FN I K Sbjct: 679 IRKAFTSRKNHLLISADYNQIEMRILADLADVKELKKAFKNDEDIHSLTASQIFNVDIKK 738 Query: 424 VSKEQRAIGKVMELALGY 441 V ++QR K + + Y Sbjct: 739 VDQDQRRKAKAINFGIIY 756 >gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] Length = 933 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + IE R+LA +A +FANGEDI+ T ++ F P+ Sbjct: 694 IRRAFIADPGHVLISADYSQIELRLLAHVADIPQLKDSFANGEDIHARTASEVFGVPMQG 753 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 754 MDSLTRRRAKAINFGIIY 771 >gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4] gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4] Length = 892 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 24/131 (18%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P RSEE +R IA+ G Sbjct: 628 TNTGRLSSSEPNLQNIPI--RSEE----------------------GRSIRHAFIAAEGC 663 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + IE RVLA ++ + AFA EDI+ T A+ F V++E R K Sbjct: 664 LLLSADYSQIELRVLAHLSADRVFCDAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKT 723 Query: 435 MELALGYQGGA 445 + + Y GA Sbjct: 724 INFGVIYGQGA 734 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473 + E R++ K + L Y G +KT++ + ++ ++++ +N S FE Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NKAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 +L++ K+L E ++Q Sbjct: 814 --MLEINKELNEDKKLILQ 830 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust. Identities = 46/199 (23%), Positives = 88/199 (44%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473 + E R++ K + L Y G +KT++ + ++ ++++ +N S FE Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NKAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 +L++ K+L E ++Q Sbjct: 814 --MLEINKELNEDKKLILQ 830 >gi|304389498|ref|ZP_07371461.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656744|ref|ZP_07909631.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304327308|gb|EFL94543.1| conserved hypothetical protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492699|gb|EFU82303.1| DNA-directed DNA polymerase I [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 317 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E V+ DGR+ T A+ TGR S QN+P +T+ G+ Sbjct: 29 VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP---------ARTVD----GQ 74 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I + + + L+ AD + IE R++A ++G++ + AFA+GED++ + Sbjct: 75 KIRE----------AFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRS 124 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A + D+V+ QR+ K L Y Sbjct: 125 VAALVYGVQPDEVTPTQRSHVKATSYGLAY 154 >gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] Length = 873 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374 TGR S QN+P R E+ EI R+ G Sbjct: 610 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 644 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++G++ IKAF +G+DI+ T A+ + V+ E+R+ K Sbjct: 645 TLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGKAQEDVTSEERSHAKA 704 Query: 435 MELALGY 441 + + Y Sbjct: 705 INFGIIY 711 >gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] Length = 1036 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 73/310 (23%), Positives = 126/310 (40%), Gaps = 66/310 (21%) Query: 162 YCKRDVEAT--------RELFKRLIPLSDGERDLWLLD--QTINDRGYRIDLDLVLKLQE 211 YC DV+ T EL +R + E D+ L+ + + G I+L + K+ Sbjct: 607 YCCEDVDITLRLRNELEAELHRRDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISS 666 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG---IDLVDMSEGTLKSILSHS 268 + E KK +E Q +AL + F I + +V E LK+ + Sbjct: 667 DFSAELKKCEE--------------QIHALAGHEFNINSPKQVGVVLFEEMGLKAGKKTA 712 Query: 269 NITQLAKDLILNRLASSG--SAILKLNTLSEAVSS------------DGRLRGTLQFYGA 314 + +++ N A S AIL+ TLS+ +S+ D R+ A Sbjct: 713 TGYSTSAEVLENLAAESEIVRAILRHRTLSKLISTYADALPKEVSELDQRIHTRFSQTTA 772 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR + QN+P T+T + G++I RS A G Sbjct: 773 A-TGRLASTQPNLQNIP---------TRTAE----GKSI-----------RSAFQAPEGH 807 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 + D + IE R++A ++ + ++AF N D++ T + F T + +V+K+QR K Sbjct: 808 HFISCDYSQIELRIMAELSQDPGLLEAFNNDFDVHTHTASLVFETELSEVTKQQRYAAKA 867 Query: 435 MELALGYQGG 444 + + + G Sbjct: 868 VNFGIMFGQG 877 >gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 873 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+++ D + +E RV+A IAG++ I AF +G+DI+ T ++ F PI+ Sbjct: 633 MRRMFVPGKGYDLLMSCDYSQVELRVMASIAGDERLIDAFRHGQDIHSRTASEIFGVPIE 692 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ R+ K + + Y Sbjct: 693 DVTPFMRSKAKTVNFGIIY 711 >gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] Length = 976 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 75/183 (40%), Gaps = 33/183 (18%) Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I L K L++L S+ L N ++E GR+ A+ TGR S Sbjct: 653 HEIIQYLIKHRTLSKLLSTYIDALP-NLINEKT---GRVHTNFN-QAATATGRLSSSNPN 707 Query: 327 PQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P R E S I R + KL+ AD + IE Sbjct: 708 LQNIPVRTEFSRRI-------------------------RKAFLPEKNWKLLSADYSQIE 742 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+LA +A E+ I AF +DI+ T F +++S ++R +GK + + Y G Sbjct: 743 LRILAHLADEEILINAFHKNDDIHSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGI 800 Query: 446 KVF 448 K F Sbjct: 801 KKF 803 >gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199] gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199] Length = 943 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E ++++ GR+ + GA+ TGR S QN+P R+EE Sbjct: 653 DALVETINAETGRVHTSYSMVGAA-TGRLSSNDPNLQNIPI--RTEE------------- 696 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R+ +A G L+ D + IE R++A IAG + KAF +G DI+ Sbjct: 697 ---------GRKIRTAFVAEPGNVLLSVDYSQIELRLVADIAGIESLRKAFLDGIDIHAQ 747 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F P+ +++ + R K + + Y Sbjct: 748 TASEVFGVPLSEMTPDIRRKAKAINFGIIY 777 >gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] Length = 890 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C + + G+ LV AD + IE RVLA ++ + ++ A G D++ T A+ F+ Sbjct: 651 MRGCFVPAPGRLLVSADYSQIELRVLAHLSQDPLMLQDMAEGLDVHTQTAARIFDVMPGL 710 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V++E R K + + Y G F+ Sbjct: 711 VTREMRVRAKTVNFGVLY--GMSAFR 734 >gi|322494966|emb|CBZ30269.1| mitochondrial DNA polymerase I protein A,putative [Leishmania mexicana MHOM/GT/2001/U1103] Length = 930 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 18/147 (12%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP--LGLASDCVRSCIIASNGK 374 TGR S QNLPR + + A N E D LG R C +A+ G Sbjct: 642 TGRLSCVEPNLQNLPRNGITAAV------AGNDAEEDGDDDLLGF-----RRCFVAAGGC 690 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ D IE RVLA + G+ ++A DI+ F VS E+R++ K Sbjct: 691 VLLSIDYEQIELRVLAHLCGDAALVEALTTSADIHRAIAEVVFKK--KPVSTEERSLAKR 748 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQ 461 + + Y G KT+A+H G+ + + Sbjct: 749 VVFGVLYGAGP---KTLATHMGVTVDR 772 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 649 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-----------------LQQFSQNVK 467 + E R++ K + L Y G +KT++ + ++ ++++ + VK Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761 Query: 468 -------------STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 S + D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NEAKQNGFITTLNSRKRYFDFENAKPMQIAM---YERESINSILQGSAADVIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 +L++ K+L E ++Q Sbjct: 814 --MLEIDKELNEDKKLILQ 830 >gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319] gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319] Length = 920 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I G AD + IE R++A ++ +D ++AF G DI+ T AK ++ +D Sbjct: 681 IRKCFIPEEGCMFFSADYSQIELRIMAHLSEDDNMMEAFREGYDIHRATAAKIWHEALDD 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 741 VTDAQRKKAKQANFGIIY 758 >gi|148272937|ref|YP_001222498.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830867|emb|CAN01811.1| DNA polymerase I [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 894 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +RS I G + L+ AD + IE R++A ++G+ I+AFA GED++ ++ F Sbjct: 653 IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFAAGEDLHRFVGSRIFGVEPA 712 Query: 423 KVSKEQRAIGKVMELALGY 441 VS E R K M L Y Sbjct: 713 DVSAEMRTKVKAMSYGLAY 731 >gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] Length = 929 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 50/241 (20%) Query: 278 ILNRLASSGSAILKL-----------NTLSEAVSS-----DGRLRGTLQFYGASRTGRWS 321 +L LA+ G A+ + +T +EA+ + GR+ + GA +TGR S Sbjct: 610 VLEGLAADGHALPRTIVDWRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGA-QTGRLS 668 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P R+EE +R IA G LV AD Sbjct: 669 STDPNLQNIPV--RTEE----------------------GRKIRQAFIAEEGNVLVSADY 704 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +A +AF +G DI+ T ++ F PI+ + R K + + Y Sbjct: 705 SQIELRILAHMADIPALKQAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIY 764 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G F + G+ + +Q +K+ +E+ +M D+ EFA + T Sbjct: 765 --GISGF-GLGRQLGIPSGEANQYIKTY-----FERFPGIRQYM-DETKEFARATGFVKT 815 Query: 502 A 502 A Sbjct: 816 A 816 >gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109] gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109] Length = 986 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 75/310 (24%), Positives = 125/310 (40%), Gaps = 56/310 (18%) Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209 YC DV TR L +L+PL + E+ L + + G RID+ + L Sbjct: 537 YCGMDVHVTRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGL 596 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL-----VDMSEGTLKSI 264 E + ++L+ D K G+ + L LF G+D T ++ Sbjct: 597 SEEMGSTLQQLESD-AKAAAGVDFNLASPKQLGELLFDTLGLDRKKSRRTKTGFSTDATV 655 Query: 265 LS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 L H + + + +L++L S+ I L L EA + GR+ + TGR Sbjct: 656 LEKLGNDHPVVPLVLEHRVLSKLKST--YIDALPQLVEAET--GRVHTDFN-QAVTATGR 710 Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 S QN+P R E S I R + G L+ Sbjct: 711 LSSSNPNLQNIPVRTEYSRRI-------------------------RKAFLPQEGWTLLS 745 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+L ++GE+ +A+ +G+D++ T + ++VS ++R +GK + Sbjct: 746 ADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLLLDK--NEVSPDERRLGKTINFG 803 Query: 439 LGYQGGAKVF 448 + Y GA+ F Sbjct: 804 VIYGMGAQRF 813 >gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 955 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 44/230 (19%) Query: 215 QERKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 Q +K L ED+ +K T S T A + + +D + + G L ++L H I +L Sbjct: 604 QLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERANGFLGALLRHREINKL 662 Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + TL +A +SD R+ T + A+ TGR S QN+P Sbjct: 663 KQ---------------IVQTLIDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIP- 705 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391 NR A +R + G + L+ D + +E R++A Sbjct: 706 ---------------NRNA--------AGREIRGVFVPGEGYEALMSCDYSQVELRIMAD 742 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Y Sbjct: 743 LSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAY 792 >gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] Length = 948 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 106/455 (23%), Positives = 181/455 (39%), Gaps = 90/455 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 ++LCA + L + E++A + S L ++DE V+ VAHN+ F+ Sbjct: 378 MSLCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVAHNAKFD------------ 425 Query: 89 PSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 VL R GLP + L + LA +L ++G +L G + YD Sbjct: 426 -------LEVLTRY-GLPEAHPLYDTMLA----HYLIDADQGHSL-DELAGGLLR---YD 469 Query: 147 CTRANHVQAWQLFG-----------EYCKRDVEATRELF----KRLIP-----LSDGERD 186 R + + F +Y D T L+ K+L P L++ E Sbjct: 470 TIRYKDLAPQESFALRTDVDPKLLCDYASEDAYVTLRLYHALHKQLSPTEQRLLTEVEIP 529 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + RG +D+ E + + R++L E +++L I S + L++ Sbjct: 530 LLYVLMHMEQRGIVLDI-------EALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSP 582 Query: 247 LITG---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNT-- 294 G D + + E K+ + + +T L L L + IL LNT Sbjct: 583 KQIGELLFDELKIMEKPRKT-KTGNYVTNEETLLPLRSLHPVVALILDYREARKLLNTYI 641 Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + DG+L + + TGR S QN+P I + + L R Sbjct: 642 DPLPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIP-------IRSDLGRPLRRA-F 692 Query: 353 IADPLGLASDCVRSCIIASN------GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +ADP + + +C + G L+ AD + +E RV+A ++ + I +F +G+ Sbjct: 693 VADPY--YTPRLSACTPVDHTHEEPIGAVLLSADYSQVELRVMAHLSQDPAMIHSFLSGD 750 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ T AK F ++V+ R+ K + Y Sbjct: 751 DIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785 >gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 950 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 44/230 (19%) Query: 215 QERKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 Q +K L ED+ +K T S T A + + +D + + G L ++L H I +L Sbjct: 599 QLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERANGFLGALLRHREINKL 657 Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + TL +A +SD R+ T + A+ TGR S QN+P Sbjct: 658 KQ---------------IVQTLIDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIP- 700 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391 NR A +R + G + L+ D + +E R++A Sbjct: 701 ---------------NRNA--------AGREIRGVFVPGEGYEALMSCDYSQVELRIMAD 737 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Y Sbjct: 738 LSGDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAY 787 >gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132] gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132] Length = 933 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 26/140 (18%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ T + TGR S QN+P R ER EI I GE Sbjct: 657 GRIHTTYN-QAVAATGRLSSTNPNLQNIPIRTERGREIRKAFIPG---GEEFT------- 705 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 ++ AD + IE R++A +G++ ++AF NG DI+ T +K F + Sbjct: 706 --------------ILSADYSQIELRIMADFSGDESMLEAFDNGMDIHAATASKVFGVSL 751 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V+ + R K++ + Y Sbjct: 752 EEVNSDMRRKAKMVNFGIIY 771 >gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1] Length = 912 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +A++ GR+ T A+ TGR S QN+ + T+ +A+ RG Sbjct: 627 LIKAIAPGGRIHTTFNQTVAA-TGRLSSTDPNLQNV-------HVRTEEGRAIRRG---- 674 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 675 ------------FVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVAS 722 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F +V E R K M L Y Sbjct: 723 QVFGVAKSEVDPEMRRKIKAMSYGLAY 749 >gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] Length = 990 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G L+ AD + IE R+L + GE+ ++A+ NG+D++ T + + Sbjct: 735 IRKAFLPQEGWSLISADYSQIELRILTHLCGEEVLVEAYRNGDDVHALTARLLLDK--EA 792 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V+ ++R +GK + + Y GA+ F Sbjct: 793 VTPDERRLGKTINFGVIYGMGAQRF 817 >gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] Length = 946 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS + G + AD A IE VLA + G++ +AF G+D++ T + FN + Sbjct: 707 IRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQDVHRHTASLIFNVKPED 766 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V+ +QR I K + + Y G F+ Sbjct: 767 VTPDQRRIAKTINFGVMY--GMSTFR 790 >gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10] gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10] Length = 878 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ + + G KL AD + IE RVLA I+ ++ I AF G DI+ T + F ++V Sbjct: 640 RAFVPSKPGSKLFAADYSQIELRVLAHISKDENLISAFQEGMDIHTKTASDVFGVKGNEV 699 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 700 TAEMRRTAKAVNFGIVY 716 >gi|113474408|ref|YP_720469.1| DNA polymerase I [Trichodesmium erythraeum IMS101] gi|110165456|gb|ABG49996.1| DNA polymerase I [Trichodesmium erythraeum IMS101] Length = 1045 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Query: 356 PLGLA-SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 P+G S +R + LV AD + IE R+LA ++ E I+A+ N +D++ T Sbjct: 783 PIGTKFSRQIRQAFLPKKDWLLVAADYSQIELRILAHLSQEPVLIEAYKNNQDVHTVTAK 842 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 F +++S E+R +GK + + Y GA+ Sbjct: 843 LLFEK--EEISSEERRVGKTINFGVIYGMGAQ 872 >gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429] gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429] Length = 890 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 79/179 (44%), Gaps = 32/179 (17%) Query: 270 ITQLAKDLILNRLASSGSAILKL-NTLSEAVSSD-----GRLRGTLQFYGASRTGRWSGC 323 + +LAKD + RL KL +T +++ S R+ + G S TGR S Sbjct: 578 LEELAKDYEIARLILEYRKFQKLKSTYVDSIPSSVNITTNRVHSSFHQTGTS-TGRLSSS 636 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV-ADLA 382 QNLP RSEE G+ I R + +V AD + Sbjct: 637 APNLQNLPT--RSEE-----------GKEI-----------RHAVKPQFENWYIVGADYS 672 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE RVLA ++ ++ + AF N DI+ T +K FN V+++ R IGK++ A+ Y Sbjct: 673 QIELRVLAHMSEDEKLLDAFENDYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIY 731 >gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] Length = 884 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 73/163 (44%), Gaps = 31/163 (19%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P RSEE +R I S+ G Sbjct: 620 TQTGRLSSVDPNLQNIPV--RSEE----------------------GRLIRQAFIPSHPG 655 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIG 432 ++ +D + IE RVLA I + AF NGEDI+ TT + F P + +V+ E R Sbjct: 656 WQIFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARRIFGLPSNEEVTPELRRQA 715 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 K + + Y G F +AS+ G+ +Q Q ++ FE++ Sbjct: 716 KAVNFGIVY--GISDF-GLASNTGITRKQAHQFIE--RYFEEY 753 >gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855] gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855] Length = 926 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 33/255 (12%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 T+ G R+D D++ ++ + + ++E++ +L G + T L LF + Sbjct: 536 TMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELA-GEEFNINSTQQLGEILFEKLDLP 594 Query: 253 LVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307 +V + T +S+L + L+L+ ++ L++L E V + GRL Sbjct: 595 VVSKTPTGKPSTKESVLQELSTEHEIPGLVLDWRSTYKLKSTYLDSLGELVHPETGRLHT 654 Query: 308 TLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 + + TGR S QN+P R E +I R Sbjct: 655 SFN-QTRTATGRLSSSDPNLQNIPIRTEMGRQI-------------------------RR 688 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 + +G L+ AD A IE R+LA ++G+D F G DI+ A+ + + V+ Sbjct: 689 AFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGGDIHTDAAARVYGIDPEDVTP 748 Query: 427 EQRAIGKVMELALGY 441 EQR+ K + + Y Sbjct: 749 EQRSKAKEVNYGIPY 763 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 87/199 (43%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 ++C +A G + D + IE R+LA + ++ ++AF+N EDI+ T F Sbjct: 649 KTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHAKTAIMIFGES---- 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473 + R+I K + L Y G +KT++ + ++ ++++ +N S T FE Sbjct: 705 NYHTRSIAKSINFGLIYGMG---YKTLSQNLKIEAKLAKEYIEKYFKNFTSIKTYFEKVK 761 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NEAKQNGFIKTLLGRKRYFDFENAKPMQIAM---YERESINSTLQGSAADIIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 ++++ KDL E ++Q Sbjct: 814 --MIKIAKDLDENKRLILQ 830 >gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] Length = 893 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 8/123 (6%) Query: 331 PRQERSEEILTQTIQALNRGETIADP-------LGLASDCVRSCIIASNGKKLVVADLAG 383 P +R QT+ A R + +DP G A +R +A +GK LV AD + Sbjct: 615 PETKRVHTSFNQTVAATGRLSS-SDPNLQNIPIRGDAGKNIRKGFMAGSGKILVAADYSQ 673 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RV A + + + AF +DI+ T + +V+ E R I K + + Y Sbjct: 674 IELRVFAHYSQDAAFMAAFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGM 733 Query: 444 GAK 446 G + Sbjct: 734 GPQ 736 >gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] Length = 948 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 106/455 (23%), Positives = 181/455 (39%), Gaps = 90/455 (19%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 ++LCA + L + E++A + S L ++DE V+ VAHN+ F+ Sbjct: 378 MSLCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVAHNAKFD------------ 425 Query: 89 PSKRWICTSVLARTNGLPSS--LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 VL R GLP + L + LA +L ++G +L G + YD Sbjct: 426 -------LEVLTRY-GLPEAHPLYDTMLA----HYLIDADQGHSL-DELAGGLLR---YD 469 Query: 147 CTRANHVQAWQLFG-----------EYCKRDVEATRELF----KRLIP-----LSDGERD 186 R + + F +Y D T L+ K+L P L++ E Sbjct: 470 TIRYKDLAPQESFALRTDVDPKLLCDYASEDAYVTLRLYHALHKQLSPTEQRLLTEVEIP 529 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + RG +D+ E + + R++L E +++L I S + L++ Sbjct: 530 LLYVLMHMEQRGIVLDI-------EALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSP 582 Query: 247 LITG---IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-------LNT-- 294 G D + + E K+ + + +T L L L + IL LNT Sbjct: 583 KQIGELLFDELKIMEKPRKT-KTGNYVTNEETLLPLRSLHPVVALILDYREARKLLNTYI 641 Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + DG+L + + TGR S QN+P I + + L R Sbjct: 642 DPLPKMCYPDGKLHTSYN-QAVTATGRLSSSNPNLQNIP-------IRSDLGRPLRRA-F 692 Query: 353 IADPLGLASDCVRSCIIASN------GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +ADP + + +C + G L+ AD + +E RV+A ++ + I +F +G+ Sbjct: 693 VADPY--YTPRLSACTPVDHTHEEPIGAVLLSADYSQVELRVMAHLSQDPAMIHSFLSGD 750 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ T AK F ++V+ R+ K + Y Sbjct: 751 DIHTATAAKVFKVAPEEVTPLMRSKAKTANFGINY 785 >gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10] gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10] Length = 928 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G LV AD + +E R+LA IA + +AF +G DI+ T ++ F PI+ Sbjct: 685 IREVFIAEPGHVLVAADYSQVELRLLAHIANVESLKQAFRDGTDIHAMTASEVFGVPIEG 744 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 745 MDPMVRRKAKAINFGVIY 762 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I+ KKL+ AD + IE R+LA IA + F N DI+ A+ F I+K Sbjct: 733 IRRAFISPPTKKLISADYSQIELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEK 792 Query: 424 VSKEQRAIGKVMELALGY 441 VS + R K + ++ Y Sbjct: 793 VSPQMRRHAKTINFSIIY 810 >gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1] gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1] Length = 944 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GK L+ AD + IE R+LA I +AF G DI+ T ++ F P++ Sbjct: 701 IRRAFVAEPGKVLISADYSQIELRLLAHIGDIPQLKRAFREGLDIHAMTASEMFGVPVEG 760 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + E R K + + Y G F +A+ G+ + +K+ Sbjct: 761 MPSETRRRAKAINFGIIY--GISAFG-LANQLGIPQDEAGAYIKT 802 >gi|295426489|ref|ZP_06819139.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295063857|gb|EFG54815.1| DNA (cytosine-5-)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 308 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/49 (46%), Positives = 29/49 (59%) Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 R TYG KL ENIV+A SRD+L E M+ IV+ +HD V + P Sbjct: 11 RIETYGAKLVENIVKAASRDLLAEAMRRLEATSNSIVMHIHDFAVIDAP 59 >gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b] gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b] Length = 993 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G L+ AD + IE R+LA IA +AFA G DI+ T ++ F P+ Sbjct: 750 IRKAFVAEPGHALISADYSQIELRLLAHIADIPQLRQAFAEGIDIHAKTASEMFGVPVQG 809 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + R K + + Y G F +A+ G+ ++ + +K Sbjct: 810 MPSDVRRRAKAINFGIIY--GISAFG-LANQLGIPREEAAAYIK 850 >gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824] gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824] gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018] Length = 871 Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 7/76 (9%) Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +CII S AD + IE RVLA IA ++ I AF + DI+ T ++ F PI++V+ Sbjct: 641 NCIILS-------ADYSQIELRVLAHIADDENLINAFKHHSDIHTKTASEVFRVPIEEVT 693 Query: 426 KEQRAIGKVMELALGY 441 R+ K + + Y Sbjct: 694 SRMRSNAKAVNFGIVY 709 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 30/142 (21%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR S QN+P R R +EI Sbjct: 748 GRIHTSFN-QAVAATGRLSSTNPNLQNIPIRTPRGQEI---------------------- 784 Query: 362 DCVRSCIIASNGKKLVV--ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 R + G + V+ AD + IE R++A +G+ ++AF NG DI+ T +K F+ Sbjct: 785 ---RKAFV-PRGPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIHTQTASKVFHV 840 Query: 420 PIDKVSKEQRAIGKVMELALGY 441 +D+V+ + R K + + Y Sbjct: 841 GLDEVTSDMRRKAKTINFGIIY 862 >gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] Length = 891 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G+ L+ AD + IE RV+A +A E ++F GEDI+ T ++ F+ D Sbjct: 651 AIREAFVPDAGQVLLAADYSQIELRVMAHMADEPILQESFRQGEDIHQRTASEIFSVFPD 710 Query: 423 KVSKEQRAIGKVMELALGYQGGA 445 V E R K + + Y GA Sbjct: 711 MVDSEMRRRAKTINFGVLYGMGA 733 >gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08] Length = 920 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGT-LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L + + DGR+ T +Q A TGR S QN+P R+EE G Sbjct: 632 VDGLLKEIRDDGRVHTTYMQTIAA--TGRLSSKDPNLQNIPM--RTEE-----------G 676 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 I + ++ + L+ AD + IE R++A ++G+ I AF +G+D + Sbjct: 677 RRIRE----------GFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFHT 726 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F + VS QR+ K M L Y Sbjct: 727 VTASHVFGVAPEDVSVAQRSKIKAMNYGLAY 757 >gi|298346797|ref|YP_003719484.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236858|gb|ADI67990.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 932 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E V+ DGR+ T A+ TGR S QN+P +T+ G+ Sbjct: 644 VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP---------ARTVD----GQ 689 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I + + + L+ AD + IE R++A ++G++ + AFA+GED++ + Sbjct: 690 KIRE----------AFVPQKPYAALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRS 739 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A + D+V+ QR+ K L Y Sbjct: 740 VAALVYGVQPDEVTPTQRSHVKATSYGLAY 769 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G LV AD + IE R+LA A ++ I++F N EDI+ T A+ F + Sbjct: 651 MIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQSFRNDEDIHTRTAAEVFQAFPE 710 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFK 449 ++++ R K + + Y G FK Sbjct: 711 FITEDLRRQAKAINFGIMY--GMSAFK 735 >gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] Length = 890 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 110/276 (39%), Gaps = 43/276 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQ 237 L D E L + + + G+++D+ V E++ E +++ ++I + I S+R+ Sbjct: 489 LHDIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEFNINSTRE 548 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS- 296 A+ LF D + + G +N+ L K + + +A KL LS Sbjct: 549 LGAI---LF-----DKLGLPTGKKTKTGYSTNVDVLEKLIPKHPIAGLVLEYRKLTKLSS 600 Query: 297 -------EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + D R+ + +RTGR S QN+P Sbjct: 601 TYVTGLLKVTGPDQRVHSVFR-QTETRTGRISSTEPNMQNIP------------------ 641 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 I LG +R +A G L+ AD + IE R+LA I+ + I AF G DI+ Sbjct: 642 ---IRTELG---SQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIH 695 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 T ++ F P + + E R K + + Y GA Sbjct: 696 TATASQVFGVPAEVLPAELRRRAKAINFGIVYGIGA 731 >gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi] gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi] Length = 1085 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R C I+ + +++ D + +E R+LA IA AF +D++ T ++ FN P+D Sbjct: 839 IRRCFISPSDDYVIMKVDYSQVELRILAHIANIPVLKNAFKENKDVHAITASQVFNVPLD 898 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +V K R K + + Y G F ++ G+D Q Sbjct: 899 QVDKSTRNKAKAINFGIIY--GMSEF-GLSKRIGVDTQ 933 >gi|23336564|ref|ZP_00121775.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bifidobacterium longum DJO10A] Length = 682 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%) Query: 55 SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L ++L+ E + H +L L +D+P LA+ + SLK A Sbjct: 152 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 210 Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A +F + H T+ E+ F ++ P E+ RD+ R Sbjct: 211 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 254 Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216 L L P+ D WL+ + G ++D ++ +++ A E Sbjct: 255 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 314 Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 +K L ED+ +K T S T A + + +D + + Sbjct: 315 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 373 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316 G L ++L H I +L + + TL +A +SD R+ T + A+ Sbjct: 374 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 417 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P NR A +R + G + Sbjct: 418 TGRLSSVDPNLQNIP----------------NR--------NAAGREIRGVFVPGEGYEA 453 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 454 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 513 Query: 436 ELALGY 441 L Y Sbjct: 514 SYGLAY 519 >gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311] gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311] Length = 994 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G L+ AD + IE R+L ++GE+ +A+ +G+D++ T + D+ Sbjct: 739 IRKAFLPQDGWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLDK--DE 796 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 VS ++R +GK + + Y GA+ F Sbjct: 797 VSPDERRLGKTINFGVIYGMGAQRF 821 >gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6] Length = 857 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 45/82 (54%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I + G +++ AD + IE R+LA + + ++AFA ED++ T A+ F + Sbjct: 618 IRRAFIPAPGWRIISADWSQIELRLLAHFSSDPNLLEAFAQDEDVHRRTAAELFGCVPEA 677 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ QR++ K + A Y GA Sbjct: 678 VTDAQRSVAKTVNFATIYGQGA 699 >gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G KLV AD + IE R+L+ +A AF +G DI+ T ++ F P+ Sbjct: 769 IRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAFQDGIDIHAMTASEMFGVPVKD 828 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + E R K + + Y G F +A+ G+ ++ +K Sbjct: 829 MPGEVRRRAKAINFGIIY--GISAF-GLANQLGIPREEAGAYIK 869 >gi|315655342|ref|ZP_07908242.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] gi|315490282|gb|EFU79907.1| DNA-directed DNA polymerase I [Mobiluncus curtisii ATCC 51333] Length = 932 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 24/150 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E V+ DGR+ T A+ TGR S QN+P +T+ G+ Sbjct: 644 VRNLRERVADDGRIHTTFGQTVAA-TGRLSSIDPNLQNIP---------ARTVD----GQ 689 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I + + + L+ AD + IE R++A ++G++ + AFA+GED++ + Sbjct: 690 KIRE----------AFVPQKPYTALMTADYSQIEMRIMAHLSGDEGLLAAFASGEDLHRS 739 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A + D+V+ QR+ K L Y Sbjct: 740 VAALVYGVQPDEVTPTQRSHVKATSYGLAY 769 >gi|116515191|ref|YP_802820.1| 5'-3' exonuclease domain-containing protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257045|gb|ABJ90727.1| 5'-3' exonuclease domain of DNA polymerase I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 886 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 38/66 (57%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A + + IK +DI+++T + FN P++K+ K R I K + Sbjct: 656 LLTADYSHIELRIIAHYSKDKNLIKDLLKNKDIHISTASHIFNKPLEKIKKYHRNIAKTI 715 Query: 436 ELALGY 441 ++ Y Sbjct: 716 NFSILY 721 >gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3] gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4] Length = 892 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1] Length = 892 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 28/152 (18%) Query: 292 LNTLSEAVSSDGRLRGT-LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L + + DGR+ T +Q A TGR S QN+P R+EE Sbjct: 604 VDGLLKEIRDDGRVHTTYMQTIAA--TGRLSSKDPNLQNIPM--RTEE------------ 647 Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + Sbjct: 648 ----------GRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFH 697 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F + VS QR+ K M L Y Sbjct: 698 TVTASHVFGVAPEDVSVAQRSKIKAMNYGLAY 729 >gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 950 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 90/426 (21%), Positives = 158/426 (37%), Gaps = 97/426 (22%) Query: 55 SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L Q+L+ E + H +L L +D+P LA+ + SLK A Sbjct: 420 AQLAQFLKSEHSRTIVHGYKELLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQA- 478 Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A +F + H T+ E+ F ++ P E RD+ R Sbjct: 479 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NELRLRDLAIIRS 522 Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216 L L P+ D WL+ + G ++D ++ +++ A E Sbjct: 523 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 582 Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 +K L ED+ +K T S T A + + +D + + Sbjct: 583 MAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 641 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316 G L ++L H I +L + + TL +A +SD R+ T + A+ Sbjct: 642 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 685 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P NR A +R + G + Sbjct: 686 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781 Query: 436 ELALGY 441 L Y Sbjct: 782 SYGLAY 787 >gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705] gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705] Length = 955 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 90/426 (21%), Positives = 158/426 (37%), Gaps = 97/426 (22%) Query: 55 SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L Q+L+ E + H +L L +D+P LA+ + SLK A Sbjct: 425 AQLAQFLKSEHSRTIVHGYKELLHLLGAVDLDLDLPMFDTKLAGYLAQPDFHADSLKQA- 483 Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A +F + H T+ E+ F ++ P E RD+ R Sbjct: 484 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NELRLRDLAIIRS 527 Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216 L L P+ D WL+ + G ++D ++ +++ A E Sbjct: 528 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 587 Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 +K L ED+ +K T S T A + + +D + + Sbjct: 588 MAWEYAGIEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 646 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316 G L ++L H I +L + + TL +A +SD R+ T + A+ Sbjct: 647 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 690 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P NR A +R + G + Sbjct: 691 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 726 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786 Query: 436 ELALGY 441 L Y Sbjct: 787 SYGLAY 792 >gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2] Length = 892 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1] gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2] gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1] gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1] Length = 892 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] Length = 910 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 669 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 728 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 729 DVSVAQRSKIKAMNYGLAY 747 >gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] Length = 937 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E + + GR+ + GA+ TGR + QN+P RSEE Sbjct: 650 DALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSEE------------- 693 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK LV D + IE R+LA IA +AF G DI+ Sbjct: 694 ---------GRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAM 744 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P++ + R K + + Y Sbjct: 745 TASEMFNVPLEGMDPMIRRQAKAINFGVIY 774 >gi|219815946|gb|ACL37072.1| DNA polymerase I [uncultured bacterium] Length = 283 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 27/131 (20%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R ER EI R + + Sbjct: 18 TGRLSSNNPNLQNIPVRTERGREI-------------------------RKAFVPRDENH 52 Query: 376 LVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L++ AD + IE R++A I+G+ +AF G+DI+ T AK +N V+KE R K Sbjct: 53 LLISADYSQIELRIVAAISGDPNMCEAFKQGKDIHTATAAKVYNIEEADVTKEMRYKAKS 112 Query: 435 MELALGYQGGA 445 + + Y GA Sbjct: 113 VNFGIIYGQGA 123 >gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202] gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202] Length = 931 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 690 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 749 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 750 DVSVAQRSKIKAMNYGLAY 768 >gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] Length = 915 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 674 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 733 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 734 DVSVAQRSKIKAMNYGLAY 752 >gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] Length = 882 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 24/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GRL T + TGR S QN+P + L G I Sbjct: 604 GRLHSTFH-QTVTATGRLSSAEPNLQNIPIR-------------LESGRRIR-------- 641 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 + + G ++ AD + IE RVLA ++ + ++AF G+DI+ T A+ F P++ Sbjct: 642 --KVFVPRQKGNLILTADYSQIELRVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPME 699 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ + R+ K + + Y Sbjct: 700 EVTPDMRSRAKAVNFGIVY 718 >gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] Length = 890 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 649 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 708 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 709 DVSVAQRSKIKAMNYGLAY 727 >gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] Length = 910 Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 669 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 728 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 729 DVSVAQRSKIKAMNYGLAY 747 >gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] Length = 948 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 74/310 (23%), Positives = 118/310 (38%), Gaps = 72/310 (23%) Query: 161 EYCKRDVEATRELFKRLIP---LSDGERDLWLLDQTI-------NDRGYRIDLDLVLKLQ 210 EY D + T L + L P + G R +D+ + G ++D + KL Sbjct: 515 EYAAEDADVTWRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDRARLAKLS 574 Query: 211 ELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 E A E KL++ I +L + + S +Q L LF + Sbjct: 575 EEFATETAKLEKTIHELAGKEFTVGSPKQ---LGEVLF-----------DDLGHKGGKKG 620 Query: 269 NITQLAKDL-ILNRLASSGSAILK---------------LNTLSEAVSSD-GRLRGTLQF 311 Q + D +L RL+ G+ I + L +A++ D GR+ + Sbjct: 621 KSGQYSTDQSVLERLSGDGAEIADKVLEWRQLTKLKSTYTDALQQAINPDTGRVHTSYSL 680 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA +TGR S QN+P I P+G +R + Sbjct: 681 VGA-QTGRLSSTDPNLQNIP---------------------IRTPIGRQ---IREAFVPE 715 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 NG L+ AD + IE R+ A +A +AFA GEDI+ T + + + ++ RA Sbjct: 716 NGNVLLAADYSQIELRLAAHMADVPELKEAFAEGEDIHARTAREMYG----EADRDTRAR 771 Query: 432 GKVMELALGY 441 K + A+ Y Sbjct: 772 AKTINFAILY 781 >gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389] gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389] Length = 871 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KL+ AD + IE R+L+ IA +AF N +DI+ T + FN ++ Sbjct: 634 IRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQIFNLQKEE 693 Query: 424 VSKEQRAIGKVMELALGY 441 ++ E R K + + Y Sbjct: 694 LTSEHRRKAKAINFGIIY 711 >gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] Length = 940 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I +G L+ AD + IE R+LA IA I+AF G DI+ T A+ F P++ Sbjct: 697 IREAFIPEDGNVLISADYSQIELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVFGVPLEG 756 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + R K + + Y G F +A + G+ + S +K Sbjct: 757 MDPSIRRQAKAINFGIIY--GISAFG-LARNLGIGRDEASLFIK 797 >gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1] Length = 892 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74] Length = 918 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L ++++ DGR+ T A+ TGR S QN+P + T +A+ RG Sbjct: 633 LIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIP-------VRTDEGRAIRRG---- 680 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ ++ I AF +GED++ T Sbjct: 681 ------------FVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 728 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 F V E R K M L Y Sbjct: 729 YVFGVEPAAVDAEMRRKIKAMSYGLAY 755 >gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131] gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131] Length = 937 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E + + GR+ + GA+ TGR + QN+P RSEE Sbjct: 650 DALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSEE------------- 693 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK LV D + IE R+LA IA +AF G DI+ Sbjct: 694 ---------GRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAM 744 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P++ + R K + + Y Sbjct: 745 TASEMFNVPLEGMDPMIRRQAKAINFGVIY 774 >gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] Length = 937 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E + + GR+ + GA+ TGR + QN+P RSEE Sbjct: 650 DALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSEE------------- 693 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A GK LV D + IE R+LA IA +AF G DI+ Sbjct: 694 ---------GRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQAFREGHDIHAM 744 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ FN P++ + R K + + Y Sbjct: 745 TASEMFNVPLEGMDPMIRRQAKAINFGVIY 774 >gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2] gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3] Length = 883 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 28/152 (18%) Query: 292 LNTLSEAVSSDGRLRGT-LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L + + DGR+ T +Q A TGR S QN+P R+EE Sbjct: 595 VDGLLKEIRDDGRVHTTYMQTIAA--TGRLSSKDPNLQNIPM--RTEE------------ 638 Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + Sbjct: 639 ----------GRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDFH 688 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F + VS QR+ K M L Y Sbjct: 689 TVTASHVFGVAPEDVSVAQRSKIKAMNYGLAY 720 >gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1] gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2] gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1] gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1] gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2] gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1] gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1] Length = 892 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 8/112 (7%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC IA +G + D + IE R+LA + ++ ++AF N EDI+ T F + Sbjct: 649 KSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDEDIHARTAIMIFG----EN 704 Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + E R++ K + L GY+ ++ K AS ++++ N S +F Sbjct: 705 NYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKTYIEKYFANFTSIKSF 756 >gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1] Length = 892 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1] gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1] gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2] gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1] gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2] gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1] gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2] gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1] gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1] gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1] gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4] gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1] gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3] gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3] gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1] gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1] gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1] gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2] gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1] gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1] gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2] gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1] gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2] gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3] gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2] gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3] gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1] gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1] gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1] gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2] gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3] gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2] gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2] gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1] gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3] gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2] gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1] gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1] gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2] gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1] Length = 892 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 896 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L + + +GR+ + G + TGR S QN+P Sbjct: 610 DKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIP--------------------- 647 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I P G +R IA +V AD + IE R++A ++ + +KAF G DI+ T Sbjct: 648 IKSPEGRK---IRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHSAT 704 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ +D V+ EQR K + L Y Sbjct: 705 AAEVLGISLDMVTSEQRRRAKAINFGLIY 733 >gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2] gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2] Length = 892 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake] gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake] Length = 861 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 62/148 (41%), Gaps = 31/148 (20%) Query: 300 SSDGRLRGTLQFYG--ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 S+ GR+ FY ++ TGR S QN+P RSEE Sbjct: 582 SNSGRVH---TFYSMVSTATGRLSSSNPNLQNIPV--RSEE------------------- 617 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 + +R IA G KL+ AD + IE R++A IA AF +DI+ T + F Sbjct: 618 ---GNSIRRAFIAKKGYKLISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITAKQIF 674 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA 445 NT +K+ K R K + + Y A Sbjct: 675 NT--EKLDKNLRRRAKSINFGIIYGMSA 700 >gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1] Length = 892 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++G+ I AF +G+D + T + F + Sbjct: 651 IREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPE 710 Query: 423 KVSKEQRAIGKVMELALGY 441 VS QR+ K M L Y Sbjct: 711 DVSVAQRSKIKAMNYGLAY 729 >gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] Length = 873 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-K 374 TGR S QN+P R E+ EI R+ G Sbjct: 610 TGRLSSSDPNLQNIPVRTEKGREI-------------------------RALFYPGAGYD 644 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ + V+ E+R+ K Sbjct: 645 TLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQEDVTSEERSHAKA 704 Query: 435 MELALGY 441 + + Y Sbjct: 705 INFGIIY 711 >gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7] gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7] Length = 2016 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 38/208 (18%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--NTLSEAVSSDGRLRGTLQFY 312 + S+ LK+ L+H I L L +L S+ L L NT + + + T Sbjct: 1706 NTSDSNLKNFLNHEEIISLRNYRRLYKLYSAFYLKLPLHINTKTNKIHTTFNQLKTF--- 1762 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 +GR+S Q +PRQ+ +R I ++ Sbjct: 1763 ----SGRFSSEKPNLQQIPRQKN----------------------------IREIFIPND 1790 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 ++AD IE ++ A I ++ +KA+ N D++ T + I ++KE R I Sbjct: 1791 NNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKNIPDINKEDRHIA 1850 Query: 433 KVMELALGYQGGAKVFKTMA-SHCGLDL 459 K + L Y K A ++ GL++ Sbjct: 1851 KAINFGLIYGMNYVNLKNYANTYYGLNM 1878 >gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] Length = 924 Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 29/166 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L +A++ + GR+ + A+ TGR S QN+P R+EE Sbjct: 634 DALKDAINPNTGRVHTSFSL-AATTTGRLSSSEPNLQNIPI--RTEE------------- 677 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R A G +V AD + IE R+LA IA + +AF G+DI+ Sbjct: 678 ---------GRKIREAFTAEPGHVIVAADYSQIELRLLAHIADVEALKQAFREGQDIHAL 728 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 T ++ F P++ + R K + + Y G F +A++ G+ Sbjct: 729 TASEMFGVPLENMDPTTRRNAKAINFGIIY--GISAFG-LANNLGI 771 >gi|322502534|emb|CBZ37617.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 1257 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 14/141 (9%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QNLPR + + A GE D LG R C +A+ G L Sbjct: 969 TGRLSCVEPNLQNLPRNGIAAAVAGN--DAEEDGEE--DLLGF-----RRCFVATGGCVL 1019 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + D IE RVLA + G+ + A DI+ F VS E+R++ K + Sbjct: 1020 LSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKK--KPVSTEERSLAKRVV 1077 Query: 437 LALGYQGGAKVFKTMASHCGL 457 + Y G KT+A+H G+ Sbjct: 1078 FGVLYGAGP---KTLATHMGV 1095 >gi|115743049|ref|XP_001201676.1| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] gi|115912854|ref|XP_791257.2| PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] Length = 361 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 49/106 (46%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 C+R+ G ++ AD + +E R+LA +A + + +G D++ AK + +D Sbjct: 81 CIRNVFCPFKGGLMLAADYSQLELRLLAHLAKDRCLMSILNSGSDVFKQIAAKWKHVDVD 140 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 V+ EQR K M + Y GA+ C D F ++ KS Sbjct: 141 SVTAEQRQQAKQMCYGMIYGIGARALGEQLGVCEEDAAAFMESFKS 186 >gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] Length = 950 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%) Query: 55 SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L ++L+ E + H +L L +D+P LA+ + SLK A Sbjct: 420 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 478 Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A +F + H T+ E+ F ++ P E+ RD+ R Sbjct: 479 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 522 Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216 L L P+ D WL+ + G ++D ++ +++ A E Sbjct: 523 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 582 Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 +K L ED+ +K T S T A + + +D + + Sbjct: 583 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 641 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316 G L ++L H I +L + + TL +A +SD R+ T + A+ Sbjct: 642 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 685 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P NR A +R + G + Sbjct: 686 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781 Query: 436 ELALGY 441 L Y Sbjct: 782 SYGLAY 787 >gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] Length = 950 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%) Query: 55 SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L ++L+ E + H +L L +D+P LA+ + SLK A Sbjct: 420 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 478 Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A +F + H T+ E+ F ++ P E+ RD+ R Sbjct: 479 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 522 Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216 L L P+ D WL+ + G ++D ++ +++ A E Sbjct: 523 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 582 Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 +K L ED+ +K T S T A + + +D + + Sbjct: 583 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 641 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316 G L ++L H I +L + + TL +A +SD R+ T + A+ Sbjct: 642 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 685 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P NR A +R + G + Sbjct: 686 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781 Query: 436 ELALGY 441 L Y Sbjct: 782 SYGLAY 787 >gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228] gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228] Length = 847 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC IA G + D + IE R+LA + ++ + AF N EDI+ T F Sbjct: 617 KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIFGES---- 672 Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + E R+I K + L GY+ +K K A+ ++++ +N S ++ Sbjct: 673 NYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFTSIKSY 724 >gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] Length = 950 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%) Query: 55 SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L ++L+ E + H +L L +D+P LA+ + SLK A Sbjct: 420 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 478 Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A +F + H T+ E+ F ++ P E+ RD+ R Sbjct: 479 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 522 Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216 L L P+ D WL+ + G ++D ++ +++ A E Sbjct: 523 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 582 Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 +K L ED+ +K T S T A + + +D + + Sbjct: 583 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 641 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316 G L ++L H I +L + + TL +A +SD R+ T + A+ Sbjct: 642 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 685 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P NR A +R + G + Sbjct: 686 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 721 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 722 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 781 Query: 436 ELALGY 441 L Y Sbjct: 782 SYGLAY 787 >gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 879 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + + +A+ GR+ T + G+S TGR + QN+P I T T Sbjct: 591 ITGIEKAIDDSGRVHTTYEQAGSS-TGRIASNDPNLQNVP-------IKTAT-------- 634 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +RS A G L+ AD + IE R++A ++G++ I+AF GED++ Sbjct: 635 ---------GRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDLHR 685 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ F +V+ E R K M L Y Sbjct: 686 FVGSRIFGVEPAEVTAEMRTKVKAMSYGLAY 716 >gi|146098918|ref|XP_001468508.1| mitochondrial DNA polymerase I protein A [Leishmania infantum] gi|134072876|emb|CAM71592.1| putative mitochondrial DNA polymerase I protein A [Leishmania infantum JPCM5] Length = 1257 Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 61/141 (43%), Gaps = 14/141 (9%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QNLPR + + A GE D LG R C +A+ G L Sbjct: 969 TGRLSCVEPNLQNLPRNGIAAAVAGN--DAEEDGEE--DLLGF-----RRCFVATGGCVL 1019 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + D IE RVLA + G+ + A DI+ F VS E+R++ K + Sbjct: 1020 LSIDYEQIELRVLAHLCGDAALVDALTTSADIHRAIAEVVFKK--KPVSTEERSLAKRVV 1077 Query: 437 LALGYQGGAKVFKTMASHCGL 457 + Y G KT+A+H G+ Sbjct: 1078 FGVLYGAGP---KTLATHMGV 1095 >gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 942 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 12/120 (10%) Query: 331 PRQERSEEILTQTIQALNRGET---------IADPLGLASDCVRSCIIASNGKKLVVADL 381 P+ +R QTI A R + I D G +R IA G +++ D Sbjct: 664 PKTKRIHTSYNQTIAATGRLSSTNPNLQNIPIKDEEGR---LLRKGFIAKKGYEILSLDY 720 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A + + I A+ +G DI+ T A F P D+V+ + R KV+ ++ Y Sbjct: 721 SQIELRIMAHFSNDPNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIY 780 >gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] Length = 920 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 23/125 (18%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + T +A+ RG + D + L Sbjct: 656 TGRLSSTDPNLQNIP-------VRTDEGRAIRRGFVVGDGF----------------ESL 692 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE RV+A ++ ++ I+AF +GED++ T ++ F+ V E R K M Sbjct: 693 MTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEMRRKIKAMS 752 Query: 437 LALGY 441 L Y Sbjct: 753 YGLAY 757 >gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8] Length = 955 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 89/426 (20%), Positives = 159/426 (37%), Gaps = 97/426 (22%) Query: 55 SDLLQYLRDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L ++L+ E + H +L L +D+P LA+ + SLK A Sbjct: 425 AQLARFLKSEHSRTIVHGYKELLHLLGAVDLDMDLPMFDTKLAGYLAQPDFHADSLKQA- 483 Query: 114 LALNFSE-HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A +F + H T+ E+ F ++ P E+ RD+ R Sbjct: 484 -AEHFLDIHFTETEQPSQGTLDFDDDQVEEDP---------------NEHRLRDLAIIRS 527 Query: 173 LFKRLIPLSDGERDLWLLD----------QTINDRGYRIDLDLVLKLQELIAQE------ 216 L L P+ D WL+ + G ++D ++ +++ A E Sbjct: 528 LAVTLGPIIDEREQCWLMRAIELPVSRVLHGMEHTGAKVDSVRLVSMRDQFAAEARQAQE 587 Query: 217 ------------------RKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 +K L ED+ +K T S T A + + +D + + Sbjct: 588 MAWEYAGTEINLQSPKQLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERA 646 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASR 316 G L ++L H I +L + + TL +A +SD R+ T + A+ Sbjct: 647 NGFLGALLRHREINKLKQ---------------IVQTLIDATNTSDERIHTTFEQTVAA- 690 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P NR A +R + G + Sbjct: 691 TGRLSSVDPNLQNIP----------------NRNA--------AGREIRGVFVPGEGYEA 726 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R++A ++ ++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 727 LMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAM 786 Query: 436 ELALGY 441 L Y Sbjct: 787 SYGLAY 792 >gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] Length = 879 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC IA G + D + IE R+LA + ++ + AF N EDI+ T F + Sbjct: 649 KSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 + E R+I K + L GY+ +K K A+ ++++ +N S ++ Sbjct: 705 NYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFTSIKSY 756 >gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH] gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH] Length = 905 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 39/82 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R G + AD + IE +LA + + I+AF N EDI++ T ++ F DK Sbjct: 665 IREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAFKNKEDIHIKTASQLFKVDTDK 724 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ R + K + + Y A Sbjct: 725 VTPSMRRVAKSINFGIIYNMSA 746 >gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] Length = 976 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G KL+ AD + IE R+LA +A E+ I AF +DI+ T F Sbjct: 721 IRKAFLPEKGWKLLSADYSQIELRILAHLANEEILITAFHQNDDIHSLTARLIFEKK--D 778 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ ++R +GK + + Y G K F Sbjct: 779 INSDERRVGKTINFGVIYGMGIKKF 803 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 26/153 (16%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + ++ L +++++DGR+ T A+ TGR S QN+P I T Sbjct: 649 VTVDGLLKSIAADGRIHTTYSQTIAA-TGRLSSTEPNLQNVP-------IRTA------- 693 Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R+ + +G +L+ AD + IE R++A ++ + I+AF + D Sbjct: 694 ----------AGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRDF 743 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + T +K F VS EQRA K M L Y Sbjct: 744 HSETASKVFGVDAADVSPEQRAKIKAMNYGLAY 776 >gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] Length = 921 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G+K+V D + IE R++A ++ + AF G DI+ T A+ + +D+ Sbjct: 682 IRQAFLAPKGRKIVACDYSQIELRIMAHLSDDKGLTDAFEKGLDIHRATAAEVWGKTLDE 741 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 VS R K + L Y G F +A GL Sbjct: 742 VSDNDRRNAKAINFGLIY--GMSAF-GLAKQLGL 772 >gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054] Length = 895 Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + VS GR+ T A+ TGR S QN+P R+EE G I Sbjct: 610 LLKTVSPQGRIHTTFNQMVAA-TGRLSSQDPNLQNIPV--RTEE-----------GRAIR 655 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 R+ ++ + L+ AD + IE R++A ++ ++ I+AF +GED++ T + Sbjct: 656 ----------RAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVAS 705 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 706 QVFAVAPADVDAEMRRKIKAMSYGLAY 732 >gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] Length = 895 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 81/307 (26%), Positives = 125/307 (40%), Gaps = 57/307 (18%) Query: 161 EYCKRDVEATRELFKRLIPLSDGER--------DLWLLDQTINDR--GYRIDLDLVLKLQ 210 EY D A +L+ +L L D ER + + +N G +IDL+ Q Sbjct: 473 EYASEDAAACYQLYFKLKGLVD-ERLMEIAKSVEFPFIQSLMNMELIGIKIDLEF---FQ 528 Query: 211 ELIAQERKKL---DEDIVKLTDGIIR-SSRQTYALRMY--LFLITGIDL---VDMSEGTL 261 ELI + R++L E+I L + +S Q A ++ L L G SE L Sbjct: 529 ELILESRERLHQISEEIFALANKRFNLNSPQQLATILFEELNLQAGKKTKSGFSTSESVL 588 Query: 262 KSIL-SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY-GASRTGR 319 S+ +H I ++ + +L S+ + LSE +D + R F + TGR Sbjct: 589 NSLYDTHPIIPKILEYREFFKLYST-----YIEPLSEHAKADLQHRIYTSFMQTGTSTGR 643 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P +T Q +R IA LV Sbjct: 644 LSSKNPNLQNIP---------VKTAQGRR---------------IRRGFIAKENHLLVSL 679 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R+LA + ++ I+AF DI++ T K F + +++E+RAI K + L Sbjct: 680 DYSQIELRLLAHFSEDEAMIEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSINFGL 736 Query: 440 GYQGGAK 446 Y G K Sbjct: 737 IYGMGPK 743 >gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12] gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12] gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12] Length = 894 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 4/105 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID- 422 +R IA G KL+ D + +E RVLA ++ ++ +KA+ +D++ T + F D Sbjct: 654 IRQGFIAREGWKLLSIDYSQVELRVLASLSKDENLLKAYQEKQDLHSVTAKRIFELQEDE 713 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +VS+EQR + K++ ++ Y G F +A G+ ++ + +K Sbjct: 714 EVSREQRIMAKIINFSIIY--GKTPF-GLAKELGISVKDAGEYIK 755 >gi|48696474|ref|YP_024516.1| putative DNA polymerase [Staphylococcus phage K] gi|46394851|gb|AAO47535.1| ORF86/ORF88/ORF90 [Staphylococcus phage K] Length = 1072 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 18/137 (13%) Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 L G+ G + T R S QNLP T + + I Sbjct: 724 LHGSFSETG-TETSRLSSSNPNLQNLPAH-------TSDVNKFDYKHPIK---------- 765 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 RS + L+ +D + +E R++ + +++F NGEDI+ T + +N P+++V Sbjct: 766 RSFVSRFENGVLLGSDYSALEMRIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEV 825 Query: 425 SKEQRAIGKVMELALGY 441 +KE+R K + L + Sbjct: 826 TKEERQATKAVNFGLAF 842 >gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829] gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] Length = 1030 Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 27/157 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L+ L + SDGR+ T A+ TGR S QN+P + Sbjct: 744 LDALVHDIRSDGRIHSTFNQTIAA-TGRLSSSDPNLQNIPTRSS---------------- 786 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 LG VR + + D + IE R+LA ++ ++ I AF G D + Sbjct: 787 -----LG---HRVRKAFVLPRNHLFLACDYSQIELRLLAHLSQDEHLIHAFQTGADFHAA 838 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 T A+ F+ D+V+ R+ K + + Y G + F Sbjct: 839 TAARIFHVSPDEVTPALRSRAKAVNFGIVY--GQQAF 873 >gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946] gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946] Length = 846 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G LVVAD + IE R+LA ++G++ K F DI+ T A F +K Sbjct: 609 IRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQTAAWMFGLEPEK 668 Query: 424 VSKEQRAIGKVMELALGY 441 V + R K + + Y Sbjct: 669 VDPQHRRAAKTINFGVLY 686 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust. Identities = 72/311 (23%), Positives = 127/311 (40%), Gaps = 61/311 (19%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLV 206 +L EY D + T +L ++ PL + L L + I G +ID+D++ Sbjct: 493 ELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVL 552 Query: 207 LKLQELIAQERKKLDEDI-----VKLTDGIIRSSRQTYALRMYLFLITGID--LVDMSEG 259 + I ++ + L+ I VK I S +Q L LF +D G Sbjct: 553 SVFSKTIEEDVRNLEASIYEKAGVKFN---IASPKQ---LGEVLFDKLQLDPKAKKTKTG 606 Query: 260 TLKS----ILSHSNITQLAKDLI----LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 K+ +L+ +N + + +D++ L +L S+ ++ L ++ L T Sbjct: 607 QYKTGEDVLLTLANKSDIVQDILDFRQLQKLKST-----YVDALPGLINPTTGLIHTSYN 661 Query: 312 YGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P R ER E+ ++ I Sbjct: 662 QAVAATGRLSSTNPNLQNIPIRTERGREVR------------------------KAFIPR 697 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 S ++ AD + IE R++A ++ + ++AF G DI+ T AK + +D+VS +QR Sbjct: 698 SENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSSDQRR 757 Query: 431 IGKVMELALGY 441 K + + Y Sbjct: 758 NAKAVNFGIIY 768 >gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916] gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916] Length = 1007 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G +L+ AD + IE R+L ++GE+ +A+ +G+D++ T D+ Sbjct: 752 IRKAFLPQEGWQLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLEK--DE 809 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 VS ++R +GK + + Y GA+ F Sbjct: 810 VSADERRLGKTINFGVIYGMGAQRF 834 >gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] Length = 798 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 56/258 (21%), Positives = 110/258 (42%), Gaps = 39/258 (15%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGI 251 + + G D D++ K+ + + E ++ E I D + S +Q L+++LF G+ Sbjct: 408 MENNGIGFDKDVMAKVADKLQDEVAEISEKIKTFVGYDINLNSPKQ---LQVFLFEELGV 464 Query: 252 DLVDMS-------EGTLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + + + E +L++++ + + + +D+++ R + + L L + V +DG Sbjct: 465 EGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLSTYAL-PLKDYVLADG 523 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + G + TGR S QN+P + G Sbjct: 524 RIHSSFRQTGTA-TGRLSSVNPNMQNIPMK------------------------GKWGVK 558 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G V D + IE R+LA + G++ +A+ N EDI+ T + F +K Sbjct: 559 LREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRNNEDIHTKTASGIFGVAPEK 618 Query: 424 VSKEQRAIGKVMELALGY 441 V R + K + + Y Sbjct: 619 VDSGMRRLAKAVNFGILY 636 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A + + ++++ D + IE RVLA ++G++ I+AF GEDI+ T ++ F P + Sbjct: 624 IRGVFVAESPEHVLLSGDYSQIELRVLAHLSGDEGLIEAFIKGEDIHTRTASEVFGVPPE 683 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 684 QVTPLLRDRAKAVNFGIIY 702 >gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018] gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] Length = 1033 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 62/141 (43%), Gaps = 26/141 (18%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T + A+ TGR S QN+P NR + Sbjct: 755 DGRIHTTFEQTIAA-TGRLSSSDPNLQNIP----------------NRN--------VVG 789 Query: 362 DCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R+ I N +L+ D + +E R++A + ++ IKAF +G D + + + P Sbjct: 790 REIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVDFHKFVASLVYKIP 849 Query: 421 IDKVSKEQRAIGKVMELALGY 441 +++VS +QR+ K M L Y Sbjct: 850 VEQVSPDQRSHVKAMSYGLAY 870 >gi|296197013|ref|XP_002806721.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase nu-like [Callithrix jacchus] Length = 965 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 58/108 (53%), Gaps = 5/108 (4%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTP 420 C R+ ++S G + AD + IE R+LA ++G+ +K F E D++ T ++ + P Sbjct: 669 CPRAMFVSSKGHTFLAADFSQIELRILAHLSGDPELLKLFQESERDDVFSTLTSQWKDVP 728 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ V+ R K + ++ Y G + +A+ G+ +Q+ +Q ++S Sbjct: 729 VEHVTHADREQTKKVVYSVVYGAGK---ERLAACLGVPVQEAAQFLES 773 >gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] Length = 934 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++ + ++AF+ G+DI+ T A+ I++ Sbjct: 694 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFSAGKDIHAATAAEVKGVSIEE 753 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ E R K + L Y G F +A G+ Sbjct: 754 VTSEDRRRAKAINFGLIY--GMSAFG-LAKQIGI 784 >gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC] gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC] Length = 869 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 66/274 (24%), Positives = 115/274 (41%), Gaps = 42/274 (15%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITG 250 TI G +D++ + +L+ ++++E L +DI L I+S +Q L L+ G Sbjct: 485 TIERNGMPLDVEDLQELERILSEELAMLTDDIYTLAGAPFNIKSPKQ---LSEVLYNKLG 541 Query: 251 IDLVDMSEGTLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + +D + T +L H I ++ + +L S+ L + S R+ Sbjct: 542 LKPIDKARSTKAEVLEALSGEHEIIEKILAFRAVEKLLSTYVKALP----RQVDPSTSRI 597 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T G + TGR + QN+P RSE RG + Sbjct: 598 HPTFNQMG-TVTGRLACQDPNLQNIPI--RSE-----------RGRLLRKAF-------- 635 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 C N + AD + IE R LA ++ ++ AF + EDI+ T ++ F+ P+++V+ Sbjct: 636 -CNTHQNNY-FLSADYSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVT 693 Query: 426 KEQRAIGKVMELALGY----QGGAKVFKTMASHC 455 K+QR K + + Y G +K+ K S Sbjct: 694 KQQRMQAKTVNFGIIYGQQAYGLSKILKISVSEA 727 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 25/126 (19%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R ER E+ R+ I Sbjct: 674 TGRLSSNNPNLQNIPIRTERGREVR------------------------RAFIPRDENHV 709 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A I+ E+ ++AF G DI+ T AK + I++V+ QR K + Sbjct: 710 LLSADYSQIELRIIADISKEENMLQAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAV 769 Query: 436 ELALGY 441 + Y Sbjct: 770 NFGIIY 775 >gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15] gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15] Length = 892 Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 40/82 (48%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + IE RVLA + + AFA EDI+ T A+ F + Sbjct: 653 IRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVFCDAFAKDEDIHTRTAAEVFGLFPEM 712 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ E R K + + Y GA Sbjct: 713 VTPEMRRQAKAINFGVIYGQGA 734 >gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 896 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 25/149 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + L + + +GR+ + G + TGR S QN+P Sbjct: 610 DKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIP--------------------- 647 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I P G +R +A +V AD + IE R++A ++ + +KAF G DI+ T Sbjct: 648 IKSPEGRK---IRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLLKAFNQGLDIHSAT 704 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A+ +D V+ EQR K + L Y Sbjct: 705 AAEVLGISLDMVTSEQRRRAKAINFGLIY 733 >gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] Length = 875 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD + IE RVLA I G+ +AF + ED++ TT K FN D+V+ R K + Sbjct: 648 ILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAV 707 Query: 436 ELALGY 441 + Y Sbjct: 708 NFGIVY 713 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G + AD + IE +LA ++G+ +AF GED++ T + F P + Sbjct: 658 IREAFVPQRGWWFLSADYSQIELVILAHLSGDPALCRAFREGEDVHRATGSLLFGVPPET 717 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V+ EQR I K + + Y G F+ Sbjct: 718 VTPEQRRIAKTINFGVIY--GMSAFR 741 >gi|291335303|gb|ADD94920.1| hypothetical protein DSY4361 [uncultured phage MedDCM-OCT-S01-C29] Length = 478 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 59/241 (24%), Positives = 98/241 (40%), Gaps = 55/241 (22%) Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L+ L + G+ L +S+ L H + Q+ LN + + + ++ E + Sbjct: 146 LKSKLSAVLGVKLESVSKNALSEFAGHHPVVQM----YLNWKKAEKRRQM-ITSIQEKMR 200 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQN--LPRQERSEEILTQTIQALNRGETIADPLG 358 DG ++ + GA TGR + F P N +P+ ++ Sbjct: 201 PDGFVKASYMQLGAE-TGRMT--CFNPNNQQIPKDKQ----------------------- 234 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 R C+ A G +V AD +E R+ A +A + I+AF +GED++ T A+A Sbjct: 235 -----FRGCVEAPKGWLIVDADFGQMELRLAAAVAQDKKMIQAFKDGEDLHTVT-AEAIG 288 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA--SHCGLDLQQFSQNVKSTSTFEDWE 476 R I K L Y GAK + A S+ + L++ +Q V+S DW Sbjct: 289 CT--------RQIAKSANFGLLYGSGAKGLRNYAAGSNVSMTLEE-AQKVRS-----DWF 334 Query: 477 Q 477 Q Sbjct: 335 Q 335 >gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] Length = 984 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G LV AD + IE R+LA ++ E ++ + N +DI+ T F + Sbjct: 730 IRKAFLPESGWLLVSADYSQIELRILAHLSQEPVLVETYRNNQDIHAVTAKLLFEK--ET 787 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 V+ E+R +GK + + Y G + F A + ++F +K Sbjct: 788 VTPEERRLGKTINFGVIYGMGPQRFAREAGVSAAEGKEFIDRLK 831 >gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 856 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE RVLA I+G+ +AF G DI+ T A F +KVS E R + K++ Sbjct: 630 FIAADYSQIELRVLAHISGDKKLCEAFERGRDIHAETAAWIFGVDTEKVSPELRRMAKMI 689 Query: 436 ELALGY 441 L Y Sbjct: 690 NFGLLY 695 >gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302] gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302] Length = 920 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C + AD + IE R++A ++G++ I+AF G DI+ T AK ++ I Sbjct: 681 IRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIEAFRQGFDIHAATAAKIWHKDIAD 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E+R K + Y Sbjct: 741 VTSEERKKAKQANFGIIY 758 >gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1] gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1] Length = 875 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 76/328 (23%), Positives = 137/328 (41%), Gaps = 60/328 (18%) Query: 133 ARFCKGSIDSPPYDCTRANHV----QAWQLFGEYCKRDVE--ATRELFKRL-IPLSDGER 185 A + KG+ P + A H+ +A E C + ++ ELF++L +PLS Sbjct: 427 AVYGKGAKRKLPEEKRYAEHISRKAEAIDALCEPCTKALKNNGQLELFEQLELPLS---- 482 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRM 243 L L D G ++D D + ++ E ++++ I + T+ I S +Q L + Sbjct: 483 -LILADMEYT--GVKVDTDRLKEMGEEFKLRLHEIEQRIYSMAGTEFNINSPKQ---LGV 536 Query: 244 YLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTL 295 LF G+ ++ ++ T +L +H + ++ L +L S+ + L Sbjct: 537 ILFEKMGLPVIKKTKTGYSTSADVLEKLEPAHEIVREILHYRQLGKLQST-----YIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIA 354 + V DG++ ++TGR S QN+P R E +I Sbjct: 592 LKVVHQDGKVHTRFN-QALTQTGRLSSTDPNLQNIPIRMEEGRKI--------------- 635 Query: 355 DPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R + S G + +D + +E RVLA I+G++ I+AF G DI+ T Sbjct: 636 ----------RQAFVPSEEGWLIFSSDYSQVELRVLAHISGDEKLIEAFREGMDIHTKTA 685 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 + F+ ++V+ E R K + + Y Sbjct: 686 MEVFHVKAEEVTSEMRRQAKTVNFGIVY 713 >gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17] gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17] Length = 921 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 79/310 (25%), Positives = 126/310 (40%), Gaps = 73/310 (23%) Query: 162 YCKRDVEATRELFKRL---IPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQE 211 Y D + T L+KR +P+ R ++D+ + RG ++D + + +L Sbjct: 488 YAAEDADVTLRLWKRFKARLPMEQATRVYEMVDRPLVPVIANMERRGIKVDRERLSQLST 547 Query: 212 LIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL-KSILSHS 268 A + L+ +I L T I S +Q L LF D + + G KS + + Sbjct: 548 EFAGQIAGLEGEIHTLAGTPFTIGSPKQ---LGEILF-----DRLGLKGGRKGKSGVYST 599 Query: 269 NITQLAKDLILNRLASSGS-----AILKLNTLSEAVSS------------DGRLRGTLQF 311 ++T+L RLA G IL+ LS+ S+ GR+ + Sbjct: 600 DVTEL------ERLARDGGEEIVRKILEWRQLSKLKSTYTDALQAQINPKTGRVHTSYSL 653 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA +TGR S QN+P I T+ + L R IA Sbjct: 654 TGA-QTGRLSSTEPNLQNIP-------IRTEVGRQL-----------------REAFIAE 688 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 +G L+ AD + IE R+ A +A AFANG+DI+ T + F +V+++ R Sbjct: 689 DGHVLIAADYSQIELRLAAHMADVPALRDAFANGDDIHSLTAKELFG----EVNRDTRGR 744 Query: 432 GKVMELALGY 441 K + A+ Y Sbjct: 745 AKTINFAILY 754 >gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] Length = 920 Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I AD + IE R++A ++ ++ ++AF +G DI+ T AK ++ P+++ Sbjct: 681 IRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENMMEAFRSGHDIHRATAAKIWHVPMEE 740 Query: 424 VSKEQRAIGKVMELALGY 441 VS QR K + Y Sbjct: 741 VSDAQRKKAKQANFGIIY 758 >gi|228941086|ref|ZP_04103643.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974018|ref|ZP_04134592.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980606|ref|ZP_04140915.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407] gi|228779167|gb|EEM27425.1| DNA-directed DNA polymerase [Bacillus thuringiensis Bt407] gi|228785744|gb|EEM33749.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818629|gb|EEM64697.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326939596|gb|AEA15492.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 808 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 40/80 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ + GK L D +G E R++AW +G++ + F G D++ T + P D+ Sbjct: 543 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKPEDE 602 Query: 424 VSKEQRAIGKVMELALGYQG 443 + K++R K + Y G Sbjct: 603 IVKKERTDAKAGNFGISYGG 622 >gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 916 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + +DGR+ T A+ TGR S QN+P + T +A+ G Sbjct: 631 LIKTIGADGRIHTTFSQTVAA-TGRLSSTDPNLQNVP-------VRTDEGRAIRHG---- 678 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 679 ------------FVVGEGFEALMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 726 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 + F V E R K M L Y Sbjct: 727 QVFGVERSAVDAEMRRKIKAMSYGLAY 753 >gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735] gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735] Length = 920 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C + AD + IE R++A ++G++ I+AF G DI+ T AK ++ I Sbjct: 681 IRKCFVPEQDCMFFSADYSQIELRIMAHLSGDENMIEAFRQGFDIHAATAAKIWHKDIAD 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ E+R K + Y Sbjct: 741 VTSEERKKAKQANFGIIY 758 >gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114] gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Vibrio fischeri ES114] Length = 932 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++ + + AF+ G+DI+ T A+ I++ Sbjct: 692 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIEE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ E R K + L Y G F +A G+ Sbjct: 752 VTSEDRRRAKAINFGLIY--GMSAF-GLAKQIGI 782 >gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] Length = 871 Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I + ++++ D + IE RVLA +A + I AF + DI+ T ++ F P+D Sbjct: 631 IRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVD 690 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R+ K + + Y Sbjct: 691 EVTSTMRSNAKAVNFGIVY 709 >gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 871 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I + ++++ D + IE RVLA +A + I AF + DI+ T ++ F P+D Sbjct: 631 IRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVD 690 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R+ K + + Y Sbjct: 691 EVTSTMRSNAKAVNFGIVY 709 >gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 985 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 5/95 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + KL+ AD + IE R+LA ++GE+ +A+ NG+D++ T + Sbjct: 730 IRKAFLPQENWKLISADYSQIELRILAHLSGEEILQEAYKNGDDVHTLTAKILLEK--ES 787 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 ++ +R +GK + + Y GA+ F A GL+ Sbjct: 788 INSNERRLGKTINFGVIYGMGAQRF---ARSTGLN 819 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S+ + L++ AD + +E R++A ++G++ I AF +GED++ T A+ F + Sbjct: 719 IRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLIAAFEHGEDVHAATAARLFGKEVA 778 Query: 423 KVSKEQRAIGKVMELALGY 441 +V ++R K + Y Sbjct: 779 EVDSDERRKAKTANFGIIY 797 >gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] Length = 833 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 27/147 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L++ + +DG++ + + A++TGR S QN+ R EE Sbjct: 555 LTKHIHADGKIHTSFNQH-ATQTGRLSSSDPNLQNISV--RDEE---------------- 595 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 + +R +AS G L+ D + IE RVL+++A E ++AF G DI+ T Sbjct: 596 ------TRMIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAK 649 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 F +D V+ R K + + Y Sbjct: 650 AIFG--VDDVTSTMRRQAKSVNFGIVY 674 >gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11] gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11] Length = 932 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++ + + AF+ G+DI+ T A+ I++ Sbjct: 692 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIEE 751 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 V+ E R K + L Y G F +A G+ Sbjct: 752 VTSEDRRRAKAINFGLIY--GMSAF-GLAKQIGI 782 >gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] Length = 831 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S G +V AD + IE R+LA + E I+A+ GEDI+ T ++ F ++ Sbjct: 591 LRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGEDIHRKTASEVFGVSLE 650 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E RA K + + Y Sbjct: 651 EVTPEMRAHAKSVNFGIVY 669 >gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] Length = 871 Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I + ++++ D + IE RVLA +A + I AF + DI+ T ++ F P+D Sbjct: 631 IRKVFIPQDSDDILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVD 690 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R+ K + + Y Sbjct: 691 EVTSTMRSNAKAVNFGIVY 709 >gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 609 LIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R+ K + + Y Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687 >gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 849 Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F + Sbjct: 609 LIRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDVS 668 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R+ K + + Y Sbjct: 669 QVTPTMRSQAKAVNFGIIY 687 >gi|167630919|ref|YP_001681418.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167593659|gb|ABZ85407.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 645 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 33/167 (19%) Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 S GR+ + F + TGR++ QN PR++ DP+G Sbjct: 345 SVTGRIHPDM-FPLGTETGRFAARNPNLQNCPRKDN-------------------DPVG- 383 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 VR+ IA GK L+ D + IE RV A+ ++ ++ + G DI+ T + + Sbjct: 384 ----VRNFFIAPKGKALLSLDFSQIELRVGAFYCRDERMLETYRTGGDIHAQTTSVIYRI 439 Query: 420 PIDKVS-------KEQRAIGKVMELALGYQGGAK-VFKTMASHCGLD 458 P ++ + KE+RAI K + Y K + + + GLD Sbjct: 440 PFEEAADKSAQHYKERRAIAKNCNFGVFYGLFPKGLHRNLKFKAGLD 486 >gi|9625474|ref|NP_039708.1| predicted 66.2Kd protein [Mycobacterium phage L5] gi|461959|sp|Q05254|DPOL_BPML5 RecName: Full=DNA polymerase gi|579133|emb|CAA79420.1| gene 44 [Mycobacterium phage L5] Length = 595 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 9/85 (10%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR C IA G + D E RVLA ++G+ I+AF NG D++ T A A P Sbjct: 375 VRRCFIAEPGDVMASVDYQAQELRVLAALSGDRNMIEAFENGADLHQMT-ADAAQVP--- 430 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 R +GK Y GGAK Sbjct: 431 -----RKVGKTANFQKVYGGGAKAL 450 >gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP] gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP] Length = 897 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G +LV AD + +E R++A IAG++ +AF G DI+ T A+ Sbjct: 660 IRKGFIADGGFRLVAADYSQLELRLMAHIAGDEPMQRAFQEGADIHRRTAAQVLGLDEST 719 Query: 424 VSKEQRAIGKVMELALGY 441 V QR K + + Y Sbjct: 720 VDVNQRRAAKTVNFGVLY 737 >gi|70935833|ref|XP_738948.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56515564|emb|CAH87194.1| hypothetical protein PC302363.00.0 [Plasmodium chabaudi chabaudi] Length = 287 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/90 (26%), Positives = 43/90 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I S ++AD IE ++ A I ++ +KA+ N D++ T + ID+ Sbjct: 53 IREIFIPSENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGIDE 112 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++KE R + K + L Y +T A+ Sbjct: 113 INKEDRHVAKAINFGLLYGMNYVNLRTYAN 142 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + IE R++A +A I+AF +G DI+ T A+ F P++ Sbjct: 686 IRHAFIAEPGHVLLSADYSQIELRLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEG 745 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 746 MDPMLRRRAKAINFGIIY 763 >gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] Length = 907 Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust. Identities = 76/289 (26%), Positives = 116/289 (40%), Gaps = 56/289 (19%) Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 EA R+L++ + E+ L + + + RG R+D D + L E +A L+ +I +L Sbjct: 500 EARRKLYEEV------EKPLSAVLKRMEVRGVRLDSDYLRGLSEALAGRIATLEAEIHRL 553 Query: 228 T--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + IRS Q L L+ D + ++ G K+ L+ T ++ L Sbjct: 554 AGREFAIRSRDQ---LETVLY-----DELGLASGK-KTKLTGKRSTAVSALEPLRNEHPI 604 Query: 286 GSAILK-----------LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-R 332 A+L+ L+ L V+ GRL T A+ TGR S QN+P R Sbjct: 605 IPALLEYRELEKLRGTYLDPLPNLVNPRTGRLHTTFSQTTAA-TGRLSSLNPNLQNIPIR 663 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 E EI R IA G L+ AD + IE R+LA I Sbjct: 664 SELGREI-------------------------RKGFIADEGYCLISADYSQIELRLLAAI 698 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 A + +AF G DI+ T A+ D ++ QR K + + Y Sbjct: 699 ADDPLMQQAFREGADIHRRTAAQVLGLAEDAITPNQRRAAKTVNFGVLY 747 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 28/141 (19%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR S QN+P R ER E Sbjct: 663 GRVHTSFN-QAVAATGRLSSNNPNLQNIPIRTERGRE----------------------- 698 Query: 362 DCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 VR I + +++ AD + IE R++A I+ E+ + AF NG DI+ T A+ + Sbjct: 699 --VRKAFIPRDENHILLSADYSQIELRIIADISKEENMLDAFKNGIDIHTATAARVYGIA 756 Query: 421 IDKVSKEQRAIGKVMELALGY 441 I++V+ QR K + + Y Sbjct: 757 IEEVTPTQRRNAKAVNFGIIY 777 >gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] Length = 905 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 28/142 (19%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360 DG++ T Q + TGR S QN+P R E ++ Sbjct: 626 DGKVHTTFQQM-VTATGRLSSTEPNLQNIPIRMEEGRKL--------------------- 663 Query: 361 SDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 R + S G +L AD + IE RVLA + + ++F GED++ T ++ F Sbjct: 664 ----RKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDVHARTASEVFGV 719 Query: 420 PIDKVSKEQRAIGKVMELALGY 441 P+++V+ + R K + L Y Sbjct: 720 PLEQVTPDMRRKAKAVNFGLMY 741 >gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] Length = 875 Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S ++ AD + IE RVLA I G+ ++AF G DI+ T K FN + Sbjct: 635 IRKAFVPSEPNSVIFAADYSQIELRVLAHITGDKGMLEAFNQGIDIHTKTAMKVFNVERE 694 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ + R K + + Y Sbjct: 695 EVTSDMRRQAKAVNFGIVY 713 >gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr] gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr] Length = 908 Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI++ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHIETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 44/184 (23%), Positives = 84/184 (45%), Gaps = 35/184 (19%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC IA +G + D + IE R+LA + ++ ++AF N EDI+ T F + Sbjct: 649 KSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDEDIHARTAIMIFG----EN 704 Query: 425 SKEQRAIGKVMELAL----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + E R++ K + L GY+ ++ K AS ++++ N S ++ + + E+ Sbjct: 705 NYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKEYIEKYFANFTSIKSYFERVKNEA 764 Query: 481 H------HLWMQDQYPEFA--------------VKDKLIGTACELVKKAWRAKHQGVLQL 520 L + +Y +FA + L G+A +++K A +L+L Sbjct: 765 KINGYISTLSGRKRYFDFANAKPMQVAMYERESINSILQGSAADIIKLA-------MLEL 817 Query: 521 WKDL 524 +K+L Sbjct: 818 YKEL 821 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 44/82 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G ++ AD + IE R+LA ++ +++ I+ F +GEDI+ T ++ F + Sbjct: 650 IREAFIPRKGWEMFCADYSQIELRILAHLSQDEFLIELFKSGEDIHKRTASEVFELFPEF 709 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ E R K + + Y GA Sbjct: 710 VTDEMRRQAKAINFGIIYGMGA 731 >gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489] gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489] Length = 929 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS A G L+ AD + IE VLA ++G+ AF NG D++ +T A + ++ Sbjct: 690 IRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLCSAFINGIDVHKSTAALIYGISPEQ 749 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V EQR K + + Y G F+ Sbjct: 750 VKPEQRRFAKTVNFGVMY--GMSAFR 773 >gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400] Length = 891 Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 41/82 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G ++ AD + IE RVLA ++ + AFA EDI+ T A+ F + Sbjct: 652 IRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDEDIHTRTAAEVFGLFPEM 711 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ E R K + + Y GA Sbjct: 712 VTPEMRRQAKAINFGVIYGQGA 733 >gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] Length = 875 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G V AD + IE RVLA +G+ I+A+ +DI+ T ++ F+ P ++ Sbjct: 636 IRKVFVPEDGYIFVDADYSQIELRVLAHCSGDANLIEAYREEKDIHRITASQVFHIPFEE 695 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + + Y Sbjct: 696 VTPLQRRNAKAVNFGIVY 713 >gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110] gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110] Length = 583 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 S +R I LV AD + IE R+LA ++ E + A+ N ED++ T F Sbjct: 327 SRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQEPVLLNAYQNTEDVHTVTAKLLFEK- 385 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 +K++ ++R +GK + + Y G++ F A + ++F Sbjct: 386 -EKITSQERNLGKTINFGVIYGMGSQRFAREAGVTAAEGKEF 426 >gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 609 LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R+ K + + Y Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687 >gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 912 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 66/147 (44%), Gaps = 20/147 (13%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +++ SD R+ T + TGR S QN+P RSEE G I Sbjct: 623 LIKSIGSDTRVHTTYA-QNVAATGRLSSNNPNLQNIPI--RSEE-----------GRRIR 668 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 + +S + L+ AD + IE R++A ++G++ I+AF +GED++ + Sbjct: 669 GAFVVGQKSTKSY------ETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHRFVGS 722 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 FN +V+ R+ K M L Y Sbjct: 723 HIFNVEPQEVTSAMRSKVKAMSYGLVY 749 >gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803] gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803] Length = 996 Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust. Identities = 76/321 (23%), Positives = 123/321 (38%), Gaps = 50/321 (15%) Query: 162 YCKRDVEATREL---FKRLIPLSDGERDLWLLDQT----------INDRGYRIDLDLVLK 208 YC DV TR L ++ + S GE+ LLDQ + G RIDL + Sbjct: 547 YCAMDVHLTRRLAIDLRQQLQAS-GEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDT 605 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L + + + +L+ D K G+ + L LF G+D + Sbjct: 606 LSKEMGETLTRLEAD-AKQAAGVDFNLASPKQLGELLFETLGLDRKKSRRTKTGYSTDAT 664 Query: 269 NITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSG 322 + +LA D L+L S ++ L + V ++ GR+ + TGR S Sbjct: 665 VLDKLADDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSS 723 Query: 323 CVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P R E S I R + L+ AD Sbjct: 724 SNPNLQNIPVRTEYSRRI-------------------------RKAFLPQEHWTLLSADY 758 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+L ++GE+ +A+ +G+D++ T D VS ++R +GK + + Y Sbjct: 759 SQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLEK--DDVSADERRLGKTINFGVIY 816 Query: 442 QGGAKVFKTMASHCGLDLQQF 462 GA+ F D ++F Sbjct: 817 GMGAQRFARETGVSQTDAKEF 837 >gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] Length = 879 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 91/207 (43%), Gaps = 34/207 (16%) Query: 335 RSEEILTQT--IQALNRG-ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 R E+ LTQT + ++N + I + ++ I ASN + ++ D + IE RVLA Sbjct: 608 RYEQTLTQTGRLSSVNPNLQNIPTRIEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAH 667 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 IA + I AF + DI+ T + P+D+V+ R K + + Y G F + Sbjct: 668 IAQDKGMIDAFKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVY--GISDF-GL 724 Query: 452 ASHCGLD-------LQQFSQNVKSTSTF-EDWEQAESHHLWMQDQY------PEFAVKDK 497 +++ G+ ++++ + K + D + H +++ Y PE K+K Sbjct: 725 SNNLGITRKRAKEFIEKYLETFKGVDKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNK 784 Query: 498 LI--------------GTACELVKKAW 510 +I GTA +++K A Sbjct: 785 IIANLNARIAMNTPIQGTAADIIKIAM 811 >gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism HF4000_APKG10H12] Length = 891 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 83/332 (25%), Positives = 131/332 (39%), Gaps = 62/332 (18%) Query: 145 YDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 Y C RA+ +QA + + D E EL++ L E+ L + I G ++ Sbjct: 462 YACERADLPLQAAEPL--RARLDQERLAELYREL------EQPLIPVLADIETAGIQVAT 513 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGI---------IRSSRQTYALRMYLFLITGIDLV 254 D +A + +++D D+ +L I I S RQ A+ LF + Sbjct: 514 DA-------LAVQSRRMDADLSELQSQIYTLAGEEFNINSPRQLSAI---LFEKLALPTR 563 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGT 308 + T + + + +LA+ L RL A+ KL + L + V D GR+ + Sbjct: 564 KKTGKTRAASTAADVLEELAQHHALPRLVIEWRAVQKLKGTYVDALPQLVRPDTGRVHTS 623 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + TGR S QN+P I PLG +R Sbjct: 624 FN-QAVAATGRLSSSDPNLQNIP---------------------IRTPLGRE---IRRAF 658 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A +G L+ AD + IE RVLA ++ + +AF EDI+ T F + E Sbjct: 659 VARDGHVLISADYSQIELRVLAHLSADTALTQAFIRNEDIHDKTALHVFGPDSGLDAHEL 718 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 R K++ AL Y G F T++ G+ Q Sbjct: 719 RRRAKIINYALLY--GKTAF-TLSRDIGVTPQ 747 >gi|148872872|gb|ABR15063.1| DNA polymerase I [Campylobacter jejuni] Length = 234 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 92 KSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 147 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 + E R++ K + L Y G +KT++ + ++ Sbjct: 148 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIE 178 >gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I Sbjct: 609 LIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFGVDIS 668 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R+ K + + Y Sbjct: 669 QVTPIMRSQAKAVNFGIVY 687 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 13/170 (7%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR +A G L+ D + IE R+LA + ++ +KAF +G+DI+ T K F ++ Sbjct: 652 VRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAFRDGKDIHYETALKLFG---EQ 708 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 + +R++ K + L Y G K ++ G+ + + + ++ S F + +++ + Sbjct: 709 EAASKRSVAKSINFGLLYGMGP---KRLSETLGISMAEAKRYIE--SYFATFPTIKAYVM 763 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 + +Q + L+G K+ + +H +Q L E V Q Sbjct: 764 EVAEQAKTTGYVETLLGR-----KRFFDFEHANAMQYAGYLREAVNTVFQ 808 >gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ] gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ] Length = 853 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 67/154 (43%), Gaps = 28/154 (18%) Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A+ TGR S QN+P + + GE I RS IA G Sbjct: 589 ATATGRLSSSNPNLQNIPIRSKD-------------GEKI-----------RSAFIAEKG 624 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 KL+ AD + +E ++LA IA +AFA G DI+V T + F + + E R K Sbjct: 625 HKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIFGEYYE-IDYELRRRAK 683 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + Y G+ +A + G+ ++ S+ V+ Sbjct: 684 SINFGIIYGMGS---YGLARNIGISRREASEYVE 714 >gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 26/148 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISEDNRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRRI- 636 Query: 355 DPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R +S+ ++ AD + IE RVLA I ++ +AF N EDI+ T Sbjct: 637 ----------RKAFKSSDDNNVIFSADYSQIELRVLAHITQDESMKQAFINDEDIHTATA 686 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN D+V R K + + Y Sbjct: 687 MKVFNVQPDEVDSLMRRQAKAVNFGIVY 714 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G L AD + IE R+LA ++ E I+ F +GED++ T F + Sbjct: 693 IRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLIECFRSGEDVHTLTARLLFEK--QE 750 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 V+ E+R + K + + Y GA+ F A + ++F Sbjct: 751 VTSEERRLAKTINYGVIYGMGAQRFARTAGVSLAEAKEF 789 >gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268] gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268] Length = 938 Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust. Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 54/222 (24%) Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 G + VR C +A G L+ D + IE R+LA + + + AF EDI+ T F Sbjct: 700 GTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAAFRADEDIHARTAISIF 759 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL-----------------DLQ 460 R I K + L Y GA ++ G+ ++ Sbjct: 760 G----DAQPAHRTIAKSINFGLIYGMGAG---KLSDSLGIARAEAKGYIERYFAAFSTIK 812 Query: 461 QFSQNVKSTST-------------FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 +F Q++KS + + D+ A ++ ++ Y AV K G+A +++K Sbjct: 813 EFLQSIKSDAKADGYVSTLFGRRRYFDFANARNNMVYAS--YEREAVNTKFQGSAADIIK 870 Query: 508 KAW---------------RAKHQGVLQLWKDLTEGFACVVQE 534 KA + + + ++ DL +GF QE Sbjct: 871 KAMVDISPLLNGEARLILQIHDELIFEVRDDLAQGFGARAQE 912 >gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427] gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427] Length = 882 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S+ + + D + IE RVLA ++G+ IKAF DI+ T ++ F+ P + Sbjct: 642 IRQLFVPSSENHIFLDGDYSQIELRVLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFE 701 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ QR+ K + + Y Sbjct: 702 DVTSMQRSNAKAVNFGIVY 720 >gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str. Chicago] Length = 1015 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A+ G +L+ AD IE VLA ++ + + AF DI+ T A FN ID Sbjct: 776 IRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 835 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V R I K + + Y G F+ Sbjct: 836 VQPAMRRIAKTINFGIVY--GMSAFR 859 >gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] Length = 997 Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A+ G +L+ AD IE VLA ++ + + AF DI+ T A FN ID Sbjct: 758 IRQAFQATVGHELISADYTQIELVVLAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 817 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V R I K + + Y G F+ Sbjct: 818 VQPAMRRIAKTINFGIVY--GMSAFR 841 >gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] Length = 988 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G +V AD + IE R+LA ++ E I+A++N +DI+ T F+ + Sbjct: 734 IRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK--ED 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQ 464 V+ E+R K + + Y G F + G+D +Q+F+Q Sbjct: 792 VTSEERRFAKTINFGVIYGMGVLKF---SRSTGVDKNIANEFIQKFNQ 836 >gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] Length = 889 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 49/231 (21%), Positives = 101/231 (43%), Gaps = 21/231 (9%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ D + IE R+LA + + I+AF DI++ T K F ++ Sbjct: 657 IREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEAFHKEADIHLETAKKIFG---EE 713 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 +++E+R++ K + L Y GA+ + + + QN F+ + ++ Sbjct: 714 LAQEKRSVAKSINFGLIYGMGARKLSETLQINHQEAKSYIQNY-----FQSFPTVKN--- 765 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK--DLTEGFACVVQEGGSISAR 541 ++++Q EF +K+ G + L+ + + + + + K L EG + Q SA Sbjct: 766 FLKEQ-EEFILKN---GYSLTLLGRMRKFSFENIQEFQKVAFLREGINAIFQG----SAA 817 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + + + + + K + ++L L++ K +Q+M T Sbjct: 818 DIIKLAMIQITQEKLESKLLLQMHDELIFEAPKNIAETEAKKIAQIMESIT 868 >gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] Length = 940 Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 27/137 (19%) Query: 313 GASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P R E EI + A N DC+ Sbjct: 673 AVTSTGRLSSTNPNLQNIPVRDELGREI-RKAFTAEN------------EDCI------- 712 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 AD + IE R++A ++ + I+AF +G DI+ T AK + P+++V+ + R Sbjct: 713 ----FFSADYSQIELRIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRK 768 Query: 432 GKVMELALGYQGGAKVF 448 K + Y G VF Sbjct: 769 AKTANFGIIY--GISVF 783 >gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102] gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102] Length = 981 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G L+ AD + IE R+L ++GE+ +A+ +G+D++ T + D+ Sbjct: 726 IRKAFLPQAGWTLLSADYSQIELRILTHLSGEEVLQEAYRSGDDVHALTARLLLDK--DE 783 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 VS ++R +GK + + Y GA+ F Sbjct: 784 VSADERRLGKTINFGVIYGMGAQRF 808 >gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9] gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9] Length = 988 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G +V AD + IE R+LA ++ E I+A++N +DI+ T F+ + Sbjct: 734 IRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK--ED 791 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQ 464 V+ E+R K + + Y G F + G+D +Q+F+Q Sbjct: 792 VTSEERRFAKTINFGVIYGMGVLKF---SRSTGVDKNIANEFIQKFNQ 836 >gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] Length = 944 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 28/140 (20%) Query: 303 GRLRGTL-QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GRL T QF A TGR S QN+P I PLG Sbjct: 666 GRLHTTFNQFITA--TGRLSSSNPNLQNIP---------------------IRSPLG--K 700 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + R+ I ++ L+ AD + IE R+ A I+G+ ++AF N EDI+ T F+T Sbjct: 701 EIRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLLEAFRNREDIHTATAKVIFDT-- 758 Query: 422 DKVSKEQRAIGKVMELALGY 441 D+++ + R K + + Y Sbjct: 759 DEITSDMRRKAKEVNFGVLY 778 >gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] Length = 940 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 27/137 (19%) Query: 313 GASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P R E EI + A N DC+ Sbjct: 673 AVTSTGRLSSTNPNLQNIPVRDELGREI-RKAFTAEN------------EDCI------- 712 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 AD + IE R++A ++ + I+AF +G DI+ T AK + P+++V+ + R Sbjct: 713 ----FFSADYSQIELRIMAHLSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRK 768 Query: 432 GKVMELALGYQGGAKVF 448 K + Y G VF Sbjct: 769 AKTANFGIIY--GISVF 783 >gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] Length = 902 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 42/171 (24%), Positives = 71/171 (41%), Gaps = 25/171 (14%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS I + G L+ AD + IE R+LA + ++ ++AF + EDI+ T A+ F + Sbjct: 662 IRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDDEDIHRRTAAEMFGVSPIE 721 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V+ E R K + + Y G A+ + + ++ Q + F D Sbjct: 722 VTPEMRRQAKTINFGIIYGMGPFGLAQRLRISTKTARTAIDKYFQGYRGVRRFIDTTIEL 781 Query: 480 SHHLWMQDQY-------PEFAVKDKLI--------------GTACELVKKA 509 + L + PE ++K I GTA +L+KKA Sbjct: 782 ARRLGYSETLLGRRRFIPELQSRNKTIRQLGERLAINTPLQGTAADLIKKA 832 >gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi] Length = 850 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 7/118 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KLV AD + +E +++A IAG AF+ G+DI++ T + F + Sbjct: 612 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD 671 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 +RA K + + Y G F +A + G+ Q+ SQ V F + + +S+ Sbjct: 672 PELRRRA--KSINFGIIY--GMSPF-GLAKNVGITRQEASQYV--AQYFRSYPEIKSY 722 >gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] Length = 861 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +AS L+ AD + IE R+LA +A E I+AF G DI+ T + F+ D Sbjct: 621 VIRKAFVASPQHTLMSADYSQIELRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHD 680 Query: 423 KVSKEQRAIGKVMELALGY 441 V R K + + Y Sbjct: 681 HVDSNMRRSAKTVNFGIVY 699 >gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo] gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo] Length = 889 Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 650 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 709 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ + R I K + + Y+ Sbjct: 710 ITPDLRRIAKSINFGIIYR 728 >gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126] gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126] Length = 936 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%) Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 +L+ AD + IE R++A + ++ ++AF NG DI+ TT AK F +D V R K Sbjct: 708 QLMAADYSQIELRIMAAFSQDEAMMEAFKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKE 767 Query: 435 MELALGY 441 + + Y Sbjct: 768 VNFGIIY 774 >gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] Length = 908 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ + R I K + + Y+ Sbjct: 729 ITPDLRRIAKSINFGIIYR 747 >gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708] gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708] Length = 982 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 5/95 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G +V AD + IE R+LA ++ E ++A+ EDI+ T F D+ Sbjct: 728 IRKAFLPESGWLMVAADYSQIELRILAHLSQEPVLVQAYKQNEDIHTVTAKLVFEK--DE 785 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ E+R K + + Y G+ F A G+D Sbjct: 786 VTSEERRFAKTINFGVIYGMGSLKF---ARSTGVD 817 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 45/199 (22%), Positives = 86/199 (43%), Gaps = 47/199 (23%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G D + IE R+LA + ++ + AF N EDI+ T F + Sbjct: 649 KSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTNDEDIHARTAIMIFG----ES 704 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------LQQFSQNVKSTST-FE--- 473 + E R++ K + L Y G +KT++ + ++ ++++ +N S FE Sbjct: 705 NYETRSVAKSINFGLIYGMG---YKTLSQNLKIEAHLAKSYIEKYFENFTSIKKYFETVK 761 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 D+E A+ + M Y ++ L G+A +++K A Sbjct: 762 NEAKQNGFITTLSGRKRYFDFENAKPMQIAM---YERESINSILQGSAADIIKLA----- 813 Query: 515 QGVLQLWKDLTEGFACVVQ 533 +L++ K+L E ++Q Sbjct: 814 --MLEINKELNEDKKLILQ 830 >gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] Length = 864 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KLV AD + +E +++A IAG AF+ G+DI++ T + F + Sbjct: 626 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD 685 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 +RA K + + Y G F +A + G+ Q+ SQ V Sbjct: 686 PELRRRA--KSINFGIIY--GMSPF-GLAKNVGITRQEASQYV 723 >gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries] gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries] Length = 864 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KLV AD + +E +++A IAG AF+ G+DI++ T + F + Sbjct: 626 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD 685 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 +RA K + + Y G F +A + G+ Q+ SQ V Sbjct: 686 PELRRRA--KSINFGIIY--GMSPF-GLAKNVGITRQEASQYV 723 >gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740] gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes] Length = 898 Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 A +R IAS G L+ D + IE R+LA + + + AF G DI+ T K F Sbjct: 660 AGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKKIFG- 718 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAK 446 ++ +K R I K + L Y G++ Sbjct: 719 --EREAKAHRGIAKTINFGLIYGMGSR 743 >gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1] gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1] Length = 789 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 29/167 (17%) Query: 276 DLILN-RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 D IL R S + LN L+ ++ D R+ T + G + TGR S QN+P Sbjct: 488 DYILKYRELSKLKSTYTLNLLN-YMADDKRIHTTFKQTGTA-TGRISSINPNLQNIPVG- 544 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + +R C A G + V D + IE R+LA ++ Sbjct: 545 -----------------------SIYGKRIRECFEAEKGYRFVSFDYSQIELRILASLSN 581 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ I AF N EDI+ T + F +++V + R + K + + Y Sbjct: 582 DENLIDAFINDEDIHNKTAKEIFG--VEEVDPKHRRLAKAVNFGIIY 626 >gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel] gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel] Length = 849 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 51/104 (49%), Gaps = 5/104 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KLV AD + +E +++A IAG AFA G+DI+ T + F D Sbjct: 611 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFAEGKDIHQVTAQQIFGD--DV 668 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 E R K + + Y G F +A + G+ Q+ +Q V+ Sbjct: 669 TDPELRRRAKSINFGIIY--GMSPF-GLAKNVGITRQEATQYVE 709 >gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis] Length = 932 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA G L+ AD + IE R+LA ++ + AFA +DI+ T ++ F+ P+ Sbjct: 686 IRKAFIAPEPGWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRTASEVFDVPMG 745 Query: 423 KVSKEQRAIGKVMELALGY 441 V++E R K + + Y Sbjct: 746 NVTREMRRRAKAVNFGIVY 764 >gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168] gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168] Length = 870 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I N L+ AD + IE RVLA I+ ++ AF G+DI+ T ++ F D Sbjct: 625 IRRAFITENEDWVLLAADYSQIELRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPD 684 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R KV+ + Y Sbjct: 685 EVTPNMRRHAKVINFGIAY 703 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR +A G KLV D + IE R+LA + + ++AF G DI++ T K F + Sbjct: 662 SVREAFVAKEGYKLVSIDYSQIELRLLAHFSKDAALMEAFNKGTDIHMATAVKLFG---E 718 Query: 423 KVSKEQRAIGKVMELALGYQGGAK 446 + +K +R K + L Y G K Sbjct: 719 EEAKAKRNFAKSVNFGLLYGMGPK 742 >gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico] gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia] Length = 853 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G KLV AD + +E +++A IAG AF+ G+DI++ T + F + Sbjct: 615 IRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEGKDIHMVTAQQIFGDGVTD 674 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 +RA K + + Y G F +A + G+ Q+ SQ V Sbjct: 675 PELRRRA--KSINFGIIY--GMSPF-GLAKNVGITRQEASQYV 712 >gi|192824219|ref|YP_001994860.1| gp43 [Mycobacterium phage Pukovnik] gi|190610449|gb|ACE79969.1| gp43 [Mycobacterium phage Pukovnik] Length = 600 Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 12/96 (12%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR C +A G + D E RVLA ++G+ I+AF G D++ T A A P Sbjct: 380 VRRCFLAEPGHVMSSIDYQTQELRVLAALSGDKTMIEAFKTGADLHQMT-ADAAQVP--- 435 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 R IGK+ Y GGA KT+A +D Sbjct: 436 -----RKIGKMANFLTVYGGGA---KTLAEQANIDF 463 >gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3] gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3] Length = 869 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 4/79 (5%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R LA ++ ++ AFA+ ED++ T ++ F+ P+++V+K+QR K + Sbjct: 647 ADYSQIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFG 706 Query: 439 LGY----QGGAKVFKTMAS 453 + Y G +K+ K S Sbjct: 707 IIYGQQAYGLSKILKISVS 725 >gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142] gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142] Length = 970 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 2/99 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I LV AD + IE R+LA ++ E + A+ N ED++ T F ++ Sbjct: 717 IRQAFIPQKDWLLVSADYSQIELRILAHLSQESVLLNAYQNAEDVHTVTAKLLFEK--EE 774 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 ++ ++R +GK + + Y G++ F A + ++F Sbjct: 775 ITPQERNLGKTINFGVIYGMGSQRFAREAGVSATEGKEF 813 >gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514] gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514] Length = 947 Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust. Identities = 69/307 (22%), Positives = 124/307 (40%), Gaps = 59/307 (19%) Query: 160 GEYCKRDVEATRELFKRLIPL---SDGERDLWLLD-------QTINDRGYRIDLDLVLKL 209 EY D + T +L+++L PL ER + ++ + G ++D + + Sbjct: 513 AEYAAEDADVTWQLWEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEF 572 Query: 210 QELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS---- 263 +++E ++ I +L + + S RQ L LF D + +SE K+ Sbjct: 573 STQLSKEMANHEQTIYRLAGQEFNLNSPRQ---LGEILF-----DKLKISENAKKTKTGQ 624 Query: 264 -ILSHSNITQLAKDL-ILNRLASSGSAILKLNTLSEAVSSD-----GRLRGTLQFYGASR 316 + + LA D I+ RL A +T ++A+ GR+ T + Sbjct: 625 YATNEQTLMDLAADHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFN-QAVTT 683 Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR + QN+P R E+ +EI R + N Sbjct: 684 TGRLNSQNPNLQNIPIRTEQGKEI-------------------------RKAFVPRNEDY 718 Query: 376 -LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + IE R++A ++ E ++ F DI+ T A+ + P+D+V+ E R K+ Sbjct: 719 VLLSADYSQIELRIIAALSHEQGMLEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKM 778 Query: 435 MELALGY 441 + + Y Sbjct: 779 VNYGIAY 785 >gi|325001391|ref|ZP_08122503.1| DNA polymerase I [Pseudonocardia sp. P1] Length = 537 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 96/243 (39%), Gaps = 54/243 (22%) Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + ++ L ++V+ DGR+ T A+ TGR S QN+P I T Sbjct: 242 VTVDGLIKSVADDGRIHTTYSQTIAA-TGRLSSTDPNLQNVP-------IRTA------- 286 Query: 350 GETIADPLGLASDCVRSCIIASNG------KKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 A +R + G +L+ AD + IE R++A ++ ++ I+AF Sbjct: 287 ----------AGRRIRDAFVVGTGPEGGAYAELMTADYSQIEMRIMAHLSEDEALIEAFR 336 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 + D + T A+ F VS EQRA K M L Y GL S Sbjct: 337 SQHDFHAETAARVFGVEAAGVSVEQRAKIKAMNYGLAY--------------GLSAYGLS 382 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 ++ ++ ++A+ M D + F V+D L G + K + A G + Sbjct: 383 GQLRIST-----DEAKG---LMDDYFAGFGGVRDYLAGVVDQARKDGYTATILGRRRYLP 434 Query: 523 DLT 525 DLT Sbjct: 435 DLT 437 >gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum] gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] Length = 856 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R ++ +G LV D + IE R++A ++ E I AF GEDI+ T ++ F P ++ Sbjct: 617 IRRAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTASEIFGVPEEE 676 Query: 424 VSKEQRAIGKVMELALGY 441 V R+ K + + Y Sbjct: 677 VDDLLRSRAKAVNFGIIY 694 >gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] Length = 858 Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + +R IA G K++ AD + IE R+LA +A +AFANG+DI+ T + F + Sbjct: 606 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFG--V 663 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++ ++ R K + + Y Sbjct: 664 QEIDEQLRRKAKSINFGIIY 683 >gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] Length = 882 Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 26/141 (18%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T Q A+ TGR S QN+ R+ E Sbjct: 606 DGRIHTTFQQTAAA-TGRLSSTDPNLQNI--HARTAE----------------------G 640 Query: 362 DCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R+ + G + ++ AD + IE R++A ++G+ I+AF G D++ ++ + P Sbjct: 641 RSIRAAFVPGEGYESIMTADYSQIEMRLMAALSGDVELIEAFREGADLHTYVASRVYGVP 700 Query: 421 IDKVSKEQRAIGKVMELALGY 441 +KV+ + R+ K M L Y Sbjct: 701 EEKVTADDRSHIKAMSYGLAY 721 >gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] Length = 944 Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 62/140 (44%), Gaps = 28/140 (20%) Query: 303 GRLRGTL-QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GRL + QF A TGR S QN+P I PLG Sbjct: 666 GRLHTSFNQFITA--TGRLSSSNPNLQNIP---------------------IRSPLG--K 700 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + R+ I +S K L+ AD + IE R+ A I+G+ I+AF N EDI+ T F + Sbjct: 701 EIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFRNREDIHTATARVIFGS-- 758 Query: 422 DKVSKEQRAIGKVMELALGY 441 D+++ + R K + + Y Sbjct: 759 DEITPDMRRKAKEVNFGVLY 778 >gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] Length = 872 Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 57/106 (53%), Gaps = 4/106 (3%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G L+++ D + +E RV+A IA ++ + +F +G+D++ T ++ F P+D Sbjct: 632 MREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLDSFRHGQDVHARTASEIFGVPLD 691 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 +V+ R+ K + + Y G F +A G+ + +Q ++S Sbjct: 692 QVTPYMRSKAKTVNFGIIY--GISDF-GLARQLGVPRGEAAQYIES 734 >gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56] gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56] Length = 869 Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R LA ++ ++ AF + ED++ T ++ F+ P++KV+K+QR K + Sbjct: 647 ADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAKTVNFG 706 Query: 439 LGY----QGGAKVFKTMASHC 455 + Y G +K+ K S Sbjct: 707 IIYGQQAYGLSKILKISVSEA 727 >gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] Length = 936 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 1/80 (1%) Query: 363 CVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + S L+ AD + IE R++A + ++ I+AF G+DI+ T +K F P+ Sbjct: 694 AIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEAFKAGKDIHTATASKLFKVPL 753 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++V + R K + Y Sbjct: 754 EQVDESMRRQAKTANFGIIY 773 >gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16] gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16] Length = 877 Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +AS G K+V AD + IE RVLA I+G++ +AF G DI+ T F+ + Sbjct: 637 IRKAFVASKEGWKIVAADYSQIELRVLAHISGDERMKEAFLTGMDIHTKTAMDVFHVKRE 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTDLMRRSAKAVNFGIVY 715 >gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] Length = 857 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 55/140 (39%), Gaps = 27/140 (19%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLAS 361 GRL T A TGR S QN+P R E EI Sbjct: 584 GRLHTTFA-QTAVATGRLSSLNPNLQNIPIRSETGREI---------------------- 620 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 R IA +G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 621 ---RKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIHRRTAAQVLGVME 677 Query: 422 DKVSKEQRAIGKVMELALGY 441 D V+ QR K + + Y Sbjct: 678 DLVTPNQRRAAKTVNFGVLY 697 >gi|317010156|gb|ADU80736.1| DNA polymerase I [Helicobacter pylori India7] Length = 885 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQ-TYALRMYLFLITGIDL 253 +G++ID +L++ E K L+ I++L D + S +Q + L L L Sbjct: 508 QGFKIDAPYFKRLEQEFKDELKVLERQILELIGVDFNLNSPKQLSEVLYEKLELPKNKSH 567 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L ++ + +L+L D ++ T Sbjct: 568 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 621 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 622 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 656 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F +++KE+R+I Sbjct: 657 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GELAKEKRSI 713 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 714 AKSINFGLVYGMGSK 728 >gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05] Length = 970 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I LV AD + IE R+LA ++ E + A+ N +D++ T F+ ++ Sbjct: 717 IRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVLLNAYKNADDVHSVTARLLFDK--EE 774 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 ++ ++R +GK + + Y G++ F A ++ ++F Sbjct: 775 ITPQERTLGKTINFGVIYGMGSQRFAREAGVSAVEGKEF 813 >gi|148872874|gb|ABR15064.1| DNA polymerase I [Campylobacter jejuni] gi|148872876|gb|ABR15065.1| DNA polymerase I [Campylobacter jejuni] Length = 234 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T F + Sbjct: 92 KSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHARTAIMIFG----ES 147 Query: 425 SKEQRAIGKVMELALGYQGGAKV 447 + E R++ K + L Y G K Sbjct: 148 NYETRSVAKSINFGLIYGMGYKT 170 >gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] Length = 911 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 31/158 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KLN+ L E V+ D T ++TGR S QN+P +R EE Sbjct: 616 KLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP--DRDEE------- 666 Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S+ G ++ +D + IE RVLA + G++ KAF + Sbjct: 667 ---------------GKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFES 711 Query: 405 GEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGY 441 GEDI+ T F D K++ +QR K + + Y Sbjct: 712 GEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 749 >gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909] Length = 876 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ AF NG DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN D+V R K + + Y Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714 >gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501] gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501] Length = 970 Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 2/99 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I LV AD + IE R+LA ++ E + A+ N +D++ T F+ ++ Sbjct: 717 IRQAFIPQQDWLLVSADYSQIELRILAHLSQEQVLLNAYKNADDVHSVTARLLFDK--EE 774 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 ++ ++R +GK + + Y G++ F A ++ ++F Sbjct: 775 ITPQERTLGKTINFGVIYGMGSQRFAREAGVSAVEGKEF 813 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I AD + IE R++A ++ ++ I+AF +G DI+ T AK ++ P++ Sbjct: 706 IRKCFIPEPECVFFSADYSQIELRIMAHLSKDENMIEAFRSGYDIHRATAAKIWHIPMED 765 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 766 VTDTQRKKAKQANFGIIY 783 >gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205] gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205] Length = 923 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 9/112 (8%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I G AD + IE R++A ++ + ++AF G DI+ T AK ++ I + Sbjct: 684 IRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVEAFREGSDIHAATAAKIWHEDIKE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 V+ QR K + Y G F GL + +N ++ ED+ Sbjct: 744 VTDAQRKKAKTANFGIIY--GITTF-------GLAQRMNIENREAKQIIEDY 786 >gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415] gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415] Length = 886 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 L+ +D + IE RVLA I+G++ I AF NGEDI+ T + FN P D ++R Sbjct: 658 LLSSDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRR 713 >gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] Length = 911 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 31/158 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KLN+ L E V+ D T ++TGR S QN+P +R EE Sbjct: 616 KLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP--DRDEE------- 666 Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S+ G ++ +D + IE RVLA + G++ KAF + Sbjct: 667 ---------------GKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFES 711 Query: 405 GEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGY 441 GEDI+ T F D K++ +QR K + + Y Sbjct: 712 GEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 749 >gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228] gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228] Length = 903 Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 619 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 664 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ AF NG DI+ T Sbjct: 665 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 714 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN D+V R K + + Y Sbjct: 715 KVFNVESDQVDSLMRRQAKAVNFGIVY 741 >gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135] gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135] Length = 919 Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 42/82 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R G + AD + IE +LA ++ ++ I+AF N +DI++ T ++ F +K Sbjct: 679 IREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKKDIHIKTASQLFKVDEEK 738 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ R I K + + Y+ A Sbjct: 739 VTSSMRRIAKSINFGIIYRMSA 760 >gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] Length = 876 Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ AF NG DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN D+V R K + + Y Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714 >gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1] gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1] Length = 903 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 31/158 (19%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KLN+ L E V+ D T ++TGR S QN+P +R EE Sbjct: 608 KLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIP--DRDEE------- 658 Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S+ G ++ +D + IE RVLA + G++ KAF + Sbjct: 659 ---------------GKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFES 703 Query: 405 GEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGY 441 GEDI+ T F D K++ +QR K + + Y Sbjct: 704 GEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVY 741 >gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] Length = 876 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ AF NG DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN D+V R K + + Y Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714 >gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] Length = 888 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA IA ++ + AFA +DI+ T ++ F +D+V+ E R K + Sbjct: 662 ADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRTASEVFGVAMDEVTPEMRGRAKAVNFG 721 Query: 439 LGYQ----GGAKVFKTMASHCG 456 + Y G AK K G Sbjct: 722 IVYGISDFGLAKDIKVTRKEAG 743 >gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S] gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S] Length = 908 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222] gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222] Length = 940 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 123/308 (39%), Gaps = 64/308 (20%) Query: 161 EYCKRDVEATRELFKRLIP-LSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQ 210 EY D E T L++ L P L+ ER + + + G RID + + ++ Sbjct: 507 EYAAEDAEVTWRLWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMS 566 Query: 211 ELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 AQ+ L+ +I +L G + S +Q L LF G ++ G + S Sbjct: 567 NAFAQKMAGLEAEIHELAGGPFNVGSPKQ---LGEILFERMG-----LAGGKQGKTGAFS 618 Query: 269 NITQLAKDLI---------------LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 ++ +DL +++L S+ + L L+ E GR+ + G Sbjct: 619 TGAEVLEDLAAEGHELPARVLDWRAISKLKSTYTDALPLHVNPET----GRVHTSYSIAG 674 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A +TGR + QN+P R++E +R +A+ G Sbjct: 675 A-QTGRLASTDPNLQNIP--VRTDE----------------------GRRIREAFVAAPG 709 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 +LV D + IE R+LA +A +AF +G DI+ T ++ F P++ + R K Sbjct: 710 MRLVSLDYSQIELRILAHVAQIPALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAK 769 Query: 434 VMELALGY 441 + + Y Sbjct: 770 AINFGVIY 777 >gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 35/72 (48%) Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G ++ AD + IE RVLA I ++ IKAF G DI+ T K F D+V R Sbjct: 643 AEPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMR 702 Query: 430 AIGKVMELALGY 441 K + + Y Sbjct: 703 RQAKAVNFGIVY 714 >gi|109392497|ref|YP_655626.1| gp47 [Mycobacterium phage Che12] gi|91980647|gb|ABE67366.1| gp47 [Mycobacterium phage Che12] Length = 595 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 13/101 (12%) Query: 360 ASD-CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 ASD VR C +A G+ + D E RVLA ++G+ I+AF G D++ T Sbjct: 370 ASDWIVRRCFVADPGQVMASVDYQTQELRVLAALSGDQTMIEAFKTGADLHQMTA----- 424 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 S+ R +GK+ Y GGA KT+A +D Sbjct: 425 ----DASQVVRKVGKMANFLTVYGGGA---KTLAEQAHIDF 458 >gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1] gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC] Length = 869 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 24/156 (15%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R LA ++ ++ AF + ED++ T ++ F+ P+++V+K+QR K + Sbjct: 647 ADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFG 706 Query: 439 LGY----QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-HHLWMQ------- 486 + Y G +K+ K S + + + + F D +++ +L ++ Sbjct: 707 IIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFIDETISQACENLRVKTLLGRER 766 Query: 487 --DQYPEF----------AVKDKLIGTACELVKKAW 510 D + EF AV ++ G+A EL+K A Sbjct: 767 IIDNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAM 802 >gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045] Length = 876 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ AF NG DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN D+V R K + + Y Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714 >gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1] gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1] Length = 875 Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S L+ AD + IE RVLA IAG++ I AF G DI+ T F+ D Sbjct: 635 IRQAFIPSEKNWLMFAADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDAD 694 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ R K + + Y Sbjct: 695 SVTSNMRRHAKAVNFGIVY 713 >gi|66732781|gb|AAY53372.1| gp69 [Listeria phage P100] Length = 702 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 33/204 (16%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 LN +S + DGR+ G+ G + T R S Q LP + Sbjct: 343 LNFIS---NKDGRVHGSFNATG-TETTRLSSNNPNMQQLPAK------------------ 380 Query: 352 TIADP--LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +DP R A L+ D + +E R+LA AG++ +AF +G D++ Sbjct: 381 -TSDPKRFDYQYPIKRMFQTAFENGALLQLDYSSLEMRILALAAGDEAMTQAFFDGADLH 439 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF---KTMASHCGLDL-QQFSQN 465 T + + P+DKV E R K + + Y F M+ D+ Q++ N Sbjct: 440 KETASIVWGMPVDKVPAEFRKKAKAVNFGIAYGETPFSFAPKHDMSVEEAEDIFQRYFAN 499 Query: 466 VKSTSTFEDWEQAESHHLWMQDQY 489 + TF D E+H ++D + Sbjct: 500 KPNIKTFID----ETHREALRDGF 519 >gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] Length = 931 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 2/101 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G L AD + IE R+LA ++ E ++ F +GED++ T + Sbjct: 696 IRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALLEGFRSGEDVHTLTARLLLEK--QE 753 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 ++ E+R + K + + Y GA+ F A + +QF Q Sbjct: 754 ITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEAKQFLQ 794 >gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028] Length = 876 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 57/147 (38%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ AF NG DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN D+V R K + + Y Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 13/114 (11%) Query: 364 VRSCIIASNGKK----------LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 VR +A + +K L+ AD + IE RVLA + E +AF+ DI+ T Sbjct: 668 VRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAFSRDIDIHALTA 727 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 ++ F PI+ V R +GK + + Y G F+ +A GL+ ++ + VK Sbjct: 728 SRLFGVPIESVDDNMRRMGKTINFGIIY--GMSGFR-LARDTGLEQREANLFVK 778 >gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] Length = 914 Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA+ G + + AD + I+ RVLA + + ++AF +DI+ T A+ F Sbjct: 675 IRGAFIAAPGHRFLAADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAM 734 Query: 424 VSKEQRAIGKVMELALGY 441 V+ + R + K + + Y Sbjct: 735 VTADMRRVAKTINFGIIY 752 >gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510] gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510] Length = 972 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E +S GR+ A+ TGR S QN+P R+EE Sbjct: 686 DALQEKISPVTGRVHTAFAL-AATNTGRLSSTDPNLQNIPV--RTEE------------- 729 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +AS G KL+ D + IE R++A +A AF +G DI+ Sbjct: 730 ---------GRKIRRAFVASPGHKLLSVDYSQIELRLVAEMADIQALKDAFRDGLDIHAA 780 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T A+ F P+ +++ + R K + + Y Sbjct: 781 TAAQVFGIPLAQMTPDIRRKAKAINFGIIY 810 >gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] Length = 740 Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust. Identities = 45/177 (25%), Positives = 75/177 (42%), Gaps = 30/177 (16%) Query: 270 ITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA D ++ + L G A LK + L+ + DGR+ + + TGR S Sbjct: 427 LEKLAPDYPIVADILEYRGLAKLKSTYADGLAAYIEEDGRIHTSFN-QTITATGRISSTE 485 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P R+E L R +R + AD + I Sbjct: 486 PNLQNIPM--RTE---------LGR-------------LIRKVFVPKEDHVFADADYSQI 521 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 E R+LA ++ + I A+ G+DI+ T +K F+ P ++V+ QR K + + Y Sbjct: 522 ELRILAHMSEDQELIAAYHEGKDIHGITASKVFHVPFEEVTPLQRRNAKAVNFGIVY 578 >gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32] gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32] Length = 891 Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 72/181 (39%), Gaps = 40/181 (22%) Query: 279 LNRLASS---GSAILKLNTLSE------------AVSSDGRLRGTLQFYGASRTGRWSGC 323 L RLA+ G IL+ +LS+ S GR+ + + TGR S Sbjct: 577 LERLAAEHEIGRLILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYN-QAVTNTGRLSSS 635 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P RSEE G +I R IA G ++ AD + Sbjct: 636 EPNLQNIPI--RSEE-----------GRSI-----------RHAFIAEEGCLILSADYSQ 671 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA ++ + AFA EDI+ T A+ F V+ E R K + + Y Sbjct: 672 IELRVLAHLSQDRVFCDAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQ 731 Query: 444 G 444 G Sbjct: 732 G 732 >gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] Length = 946 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I SN + L++ AD + IE RV A I+G++ ++AF N EDI+ T FNT Sbjct: 704 IRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEAFRNREDIHSATARTIFNT--T 761 Query: 423 KVSKEQRAIGKVMELALGY 441 +++ E R K + + Y Sbjct: 762 EITPEMRRKAKEVNFGVLY 780 >gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68] gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68] Length = 955 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 44/230 (19%) Query: 215 QERKKLDEDI-VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 Q +K L ED+ +K T S T A + + +D + + G L ++L H I +L Sbjct: 604 QLQKVLFEDMGLKPTKRTKSGSYTTNAAALQDLYVKSVD-NERANGFLGALLRHREINKL 662 Query: 274 AKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + TL +A +SD R+ T + A+ TGR S QN+P Sbjct: 663 KQ---------------IVQTLIDATNTSDERIHTTFEQTVAA-TGRLSSVDPNLQNIP- 705 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391 NR A +R + G + L+ D + +E R++A Sbjct: 706 ---------------NRNA--------AGREIRGVFVPGEGYEALMSCDYSQVELRIMAD 742 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 ++ ++ I+AF +G D + + + P+D+++ +QR+ K M L Y Sbjct: 743 LSDDEALIEAFRSGADFHKYVASMVYKLPVDQITGDQRSHVKAMSYGLAY 792 >gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4] Length = 876 Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA I+G++ ++AF ED++ T + F+ D Sbjct: 636 IRQAFVPSKEGWVIFAADYSQIELRVLAHISGDEKLMEAFQQDEDVHTKTAMEVFSVSKD 695 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ E R K + + Y Sbjct: 696 DVTSEMRRHAKAVNFGIVY 714 >gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116] gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116] Length = 907 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 668 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHAETASKLFKIEEKE 727 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 728 ITPNLRRIAKSINFGIIYR 746 >gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] Length = 880 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 25/126 (19%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R E EI ++ I +S+ Sbjct: 609 TGRLSSTNPNLQNIPIRTEEGREIR------------------------KAFIPSSDNMI 644 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + IE RV A ++G+ +AF +G DI+ T ++ F ++VS R KV+ Sbjct: 645 LLAVDYSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVI 704 Query: 436 ELALGY 441 L Y Sbjct: 705 NFGLAY 710 >gi|291412349|ref|XP_002722448.1| PREDICTED: DNA-directed DNA polymerase nu [Oryctolagus cuniculus] Length = 858 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 6/123 (4%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--ANGEDIYVTTYAKAFNTPID 422 R+ ++S G + AD + IE R+LA ++G+ +K F + ED++ T ++ N P++ Sbjct: 596 RAMFVSSAGHTFLAADFSQIELRILAHLSGDAELLKLFHESEREDVFSTLTSQWKNMPVE 655 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ R K + ++ Y G A L+ F Q K S F A Sbjct: 656 HVTHVDREQTKKVVYSVVYGAGKERLAACLGVAVPEAARFLETFLQKYKKISDFAQAAIA 715 Query: 479 ESH 481 + H Sbjct: 716 QCH 718 >gi|217031810|ref|ZP_03437313.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128] gi|216946462|gb|EEC25064.1| hypothetical protein HPB128_199g18 [Helicobacter pylori B128] Length = 383 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQT-YALRMYLFLITGIDL 253 +G++ID+ +L++ E K L+ I+ L D + S +Q L L L Sbjct: 6 QGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKSH 65 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L ++ + +L+L D ++ T Sbjct: 66 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 119 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 120 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 154 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I Sbjct: 155 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSI 211 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 212 AKSINFGLVYGMGSK 226 >gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 939 Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA ++G+ AFA +DI+ T ++ F P++ V+ E R K + Sbjct: 709 LLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRTASEVFGVPMENVTSEMRRRAKAV 768 Query: 436 ELALGY 441 + Y Sbjct: 769 NFGIVY 774 >gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402] Length = 944 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 27/161 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL + +GR+ + G + TGR S QN+P + N G Sbjct: 659 DTLPKMTDKNGRIHTSFIQTGTA-TGRLSSRDPNLQNIPIRG-------------NEGRK 704 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I R A G+ L+ AD + IE +LA ++ + ++AF G D++ T Sbjct: 705 I-----------REAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNKGIDVHAKT 753 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + F I VS++ R I K + + Y G F+ +S Sbjct: 754 ASLIFAVDIKDVSQDMRRIAKTINFGVMY--GMSAFRLASS 792 >gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] Length = 908 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEILIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] Length = 985 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 80/311 (25%), Positives = 132/311 (42%), Gaps = 58/311 (18%) Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKL 209 YC DV TR+L+ ++LI L + E+ L + + RG RID+ + +L Sbjct: 536 YCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLKEL 595 Query: 210 QELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 + + K +++ K+ TD + S +Q L LF G+D S T + Sbjct: 596 SIELNKALKNIEKSAYKIAKTDFNLSSPKQ---LGEVLFEQLGLD-KKKSRRTKTGWSTD 651 Query: 268 SNITQ-LAKDLILNRLASSGSAILKL-NTLSEAV-----SSDGRLRGTLQFYGASRTGRW 320 +N+ + L D + L + KL +T EA+ + GR+ + TGR Sbjct: 652 ANVLERLQGDNPIVPLVIEHRTLSKLLSTYVEALPQLVEAQTGRVHTDFN-QAVTATGRL 710 Query: 321 SGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P R E S I R + G +L+ A Sbjct: 711 SSSNPNLQNIPIRTEFSRRI-------------------------RKAFLPREGWQLLSA 745 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMEL 437 D + IE R+LA ++GE +A+ NG+D++ T AK +DK ++ +R +GK + Sbjct: 746 DYSQIELRILAHLSGEASLQEAYRNGDDVHALT-AKIL---LDKESITSNERRLGKTINF 801 Query: 438 ALGYQGGAKVF 448 + Y G + F Sbjct: 802 GVIYGMGVQRF 812 >gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] Length = 908 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|162149305|ref|YP_001603766.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] Length = 943 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G L+ AD + IE R+LA +A +AFA G+DI+ T ++ F PI+ Sbjct: 704 IRRAFVAAPGHVLLSADYSQIELRLLAHVADIPALREAFALGQDIHARTASEVFGIPIEG 763 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 764 MDPLTRRRAKAINFGIIY 781 >gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] Length = 924 Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (52%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G LV AD + IE R+LA +A +AFA G+DI+ T ++ F P++ Sbjct: 685 IRRAFVAAPGHLLVSADYSQIELRLLADVANIPALREAFALGQDIHARTASEVFGIPLEG 744 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 745 MDPLTRRRAKAINFGIIY 762 >gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1] gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1] Length = 908 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645] gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645] Length = 880 Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +RS I KL+ AD + IE RVLA +G+ ++++ EDI+ ++ + P+D Sbjct: 632 IRSAFIPGTPDWKLLCADYSQIELRVLAHFSGDPALMESYQKNEDIHARVASEVYGVPLD 691 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 692 QVTSTHRRSAKAINFGVVY 710 >gi|47934698|gb|AAT39787.1| DNA polymerase [Uncultured T7-like podovirus] Length = 210 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 65/234 (27%), Positives = 94/234 (40%), Gaps = 58/234 (24%) Query: 184 ERDLWLLDQTI--------NDRGYRIDLDLVLKLQELIAQER------KKLDEDIVKLTD 229 ER+ WLLDQ + +R I+ DL L I +ER K+L + + Sbjct: 1 ERNGWLLDQRLCHILCAKFKERMNEIESDL-QALFPPIVEERYSEKTGKRLKDKVTVFNV 59 Query: 230 GIIRSSRQTYALRMYL-------FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 G SRQ A R+ TG +VD E TLK Q+ + L+L + Sbjct: 60 G----SRQQVAERLSAKGAVWTELTPTGKPMVD--EKTLKENSHVPEAAQVLEYLLLQKR 113 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + ++N+ E V DGR+ G + GA TGR Sbjct: 114 YA------QVNSWLEHVQDDGRVHGRVTTNGAV-TGR----------------------M 144 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 T Q N + + DC R+C I G+KLV D +G+E R+LA G++ Sbjct: 145 THQNPNMAQVPSVNSEYGEDC-RNCWIVPEGRKLVGVDASGLELRMLAHYMGDE 197 >gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1] gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1] Length = 968 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ +A L+ AD + IE R+LA IA +AF+ G+DI+ T ++ F I+ Sbjct: 725 IRTAFVAPKRHVLLSADYSQIELRILAHIANITALKEAFSRGQDIHAITASQIFGVAIEG 784 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + R K + + Y G F +A+ GL Q+ + ++ Sbjct: 785 MPSDIRRRAKAINFGIIY--GISAF-GLANQLGLSRQEAGRYIQ 825 >gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a] Length = 908 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|194015681|ref|ZP_03054297.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] gi|194013085|gb|EDW22651.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus pumilus ATCC 7061] Length = 744 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 67/278 (24%), Positives = 108/278 (38%), Gaps = 45/278 (16%) Query: 192 QTINDRGYRIDLDLVLKL-QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 Q + G+ IDLD + +EL + + DE I +L D I S Q L+ L +TG Sbjct: 319 QQMETTGFDIDLDYAEEYGRELKSGLDRLYDELIEELGDVNINSPAQ---LKPALERVTG 375 Query: 251 IDLVDM-SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGT 308 L ++ LK + + + +L S +N L E + G+L Sbjct: 376 ESLASTDAKKVLKPLAKKYPVVKK----LLEYKDSFKLYSTYINALPELIDQKTGKLYTN 431 Query: 309 LQFYGASRTGRWS--GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 GA +TGR+S G QN P++ R Sbjct: 432 FNPNGA-KTGRFSSGGTGVNLQNQPKK------------------------------ARK 460 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 +A G ++ D + E R LA+ + + + G+D+Y + A+ F PI++ Sbjct: 461 LFVAPEGYAILGGDWSQQEYRCLAYFTQDPKLVDNYFRGDDLYASIAAEVFGKPIEECGD 520 Query: 427 EQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 R KV+ LA+ Y GGA + K + Q+F Sbjct: 521 GSVYRKQAKVIMLAVAYGGGANMLKDAIGVEKHEAQKF 558 >gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307] gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307] Length = 986 Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 55/118 (46%), Gaps = 6/118 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + L+ AD + IE R+L + GE+ ++A+ +G+D++ T + + Sbjct: 731 IRKAFLPQKDWTLLSADYSQIELRILTHLCGEEALVEAYNSGDDVHALTARLLLDK--SE 788 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF----SQNVKSTSTFEDWEQ 477 VS E+R +GK + + Y GA+ F + ++F Q F +W++ Sbjct: 789 VSDEERRLGKTINFGVIYGMGAQRFARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQE 846 >gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425] gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425] Length = 982 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 78/321 (24%), Positives = 120/321 (37%), Gaps = 55/321 (17%) Query: 162 YCKRDVEATRELFKRL-IPLSDGERDLWLLDQTINDR-----------GYRIDLDLVLKL 209 YC DV AT +L +L L D L L T+ G RID D + +L Sbjct: 532 YCGLDVYATFQLVPKLRADLLDANPKLLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQL 591 Query: 210 QELIAQERKKLDEDIVKLTDGIIR--SSRQTYALRMYLFLITGIDL-----VDMSEGTLK 262 + + Q+ L+E L S +Q L LF +D+ + T Sbjct: 592 SQQLEQDLHALEERAYGLAGETFNLGSPKQ---LSELLFNKLKLDVKKSRKTKLGYSTDA 648 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWS 321 + L DLIL + ++ L V SD GR+ + TGR S Sbjct: 649 ATLEKMQGDHPVIDLILEHRTLAKLKSTYVDALPNLVRSDTGRVHTDFN-QAITATGRLS 707 Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 QN+P R E S +I R I G LV AD Sbjct: 708 SSNPNLQNIPIRTEFSRQI-------------------------RKAFIPEPGWMLVTAD 742 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA ++ E ++A+ +D++ T + ++ E+R + K++ + Sbjct: 743 YSQIELRILAHLSQEPRLVEAYQQHQDVHKLTAQLLLEK--EDINPEERRLAKIINFGVI 800 Query: 441 YQGGAKVFKTMASHCGLDLQQ 461 Y GA+ F A G+ +Q Sbjct: 801 YGMGAQRF---ARESGVSFKQ 818 >gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] Length = 908 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] Length = 908 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|88608724|ref|YP_506553.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] gi|88600893|gb|ABD46361.1| DNA polymerase I [Neorickettsia sennetsu str. Miyayama] Length = 829 Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 30/125 (24%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+PR++ +R A G Sbjct: 561 TGRLSSSNPNLQNIPREKE----------------------------IRKIFTAKEGHHF 592 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R+LA+IA + A A+G D++ T ++ F T DK++ + R K + Sbjct: 593 LCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DKITPDLRNKAKAVN 650 Query: 437 LALGY 441 + Y Sbjct: 651 FGIVY 655 >gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] Length = 908 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] Length = 908 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 842 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 30/165 (18%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ + + TGR S QN+P RSEE Sbjct: 573 DGRIHTSFS-TTVTATGRLSSSNPNLQNIPI--RSEE----------------------G 607 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + +R IA G K++ AD + IE ++LA +A +AFAN +DI+ T + F + Sbjct: 608 NFIRQAFIAPKGCKIISADYSQIELKLLAHVANVTAFKEAFANRQDIHDITARQVFG--V 665 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 ++ ++ R K + + Y G F +A G+ Q+ ++ + Sbjct: 666 QEIDEQLRRKAKTINFGIIY--GISPF-GLAKRLGITFQEAAEYI 707 >gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] Length = 880 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE RVLA IAG++ IKAF DI+ T F+ D+V+ R K + Sbjct: 653 MFAADYSQIELRVLAHIAGDEKLIKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAV 712 Query: 436 ELALGY 441 + Y Sbjct: 713 NFGIVY 718 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R ER E VR IA + + Sbjct: 665 TGRLSSNNPNLQNIPIRTERGRE-------------------------VRKAFIARDDEH 699 Query: 376 LVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 +++ AD + IE R++A I+ + + AFA G DI+ T AK + +++V+ QR K Sbjct: 700 VILSADYSQIELRLIAEISKDANMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKA 759 Query: 435 MELALGY 441 + + Y Sbjct: 760 VNFGIIY 766 >gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40] Length = 908 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405] gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405] Length = 936 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 27/161 (16%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 +TL + +GR+ + G + TGR S QN+P + N G Sbjct: 651 DTLPKMTDKNGRIHTSFIQTGTA-TGRLSSRDPNLQNIPIRG-------------NEGRK 696 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 I R A G+ L+ AD + IE +LA ++ + ++AF G D++ T Sbjct: 697 I-----------REAFQAEKGRVLISADYSQIELVILAHLSKDQNLVEAFNTGIDVHAKT 745 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 + F I VS++ R I K + + Y G F+ +S Sbjct: 746 ASLIFAVDIKDVSQDMRRIAKTINFGVMY--GMSAFRLASS 784 >gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] Length = 908 Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1] Length = 908 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] Length = 755 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 101/457 (22%), Positives = 178/457 (38%), Gaps = 81/457 (17%) Query: 61 LRDETVMCVAHNSLFE-RILFKKTLGI-DIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D + + HNS ++ +L + L + I I +VL N +LKN LA + Sbjct: 196 LTDVNIGKILHNSKYDIHMLIRHGLRLRGIKHDTMIAMAVL-NENEPTLALKN--LATKY 252 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK--- 175 ++ ++ F K S P D Y +D T EL+K Sbjct: 253 GKYFGFEDKSYTYEELFGKTSFAEIPLDAALV-----------YAAKDTHLTYELYKWQR 301 Query: 176 ---------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RLI + E L + + G+ ID+D ++ + + E L+ ++ + Sbjct: 302 QHLNQKESLRLI-YDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANLTE 360 Query: 227 LTDGIIRSSRQTYALRMY----LFLITGIDLVDMSEGTLKSI---LSHSNITQLAKDLIL 279 I +S A +Y L +I G + TLK + H I L K L Sbjct: 361 HFGDINFNSPLQLAAVLYDKLKLPVIKGKER-STDVKTLKKLRDETKHEGIDVLLKYREL 419 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 +L + + L + + DG L G+ A+ TGR++ QNLP + Sbjct: 420 TKLLGT-----YVEALPQLIKKDGLLHGSFN-QVATVTGRFASREPNLQNLPPR------ 467 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 R I+A ++ D + IE RVLA ++G+ Sbjct: 468 ------------------------ARRLIVAPEDSLILGVDFSQIEPRVLAHMSGDPHLQ 503 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGL 457 + + G+D+Y T ++ F ++ + R + KV LA+ Y G ++ T+A G+ Sbjct: 504 EPYLKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMY--GTSMW-TLADQLGI 560 Query: 458 DLQQFSQNVKS-TSTFEDWEQ--AESHHLWMQDQYPE 491 +++ +Q ++ +T+ D +H Q++Y E Sbjct: 561 TVEEANQFIEDFFATYPDVYAFICATHEFAKQNEYVE 597 >gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] Length = 908 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes] gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] Length = 867 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 45/79 (56%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R ++S L++ AD + IE RVLA ++ ++ I++F N EDI++ T ++ F + Sbjct: 627 IRKAFVSSYEDGLIISADYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFKVSKE 686 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E R K + + Y Sbjct: 687 EVTSEMRRRAKAVNFGIVY 705 >gi|298735561|ref|YP_003728082.1| DNA polymerase I [Helicobacter pylori B8] gi|298354746|emb|CBI65618.1| DNA polymerase I [Helicobacter pylori B8] Length = 893 Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 110/255 (43%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQT-YALRMYLFLITGIDL 253 +G++ID+ +L++ E K L+ I+ L D + S +Q L L L Sbjct: 516 QGFKIDVPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKSH 575 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] Length = 908 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] Length = 908 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R NG + AD + IE +LA ++ ++ IKAF N +DI+ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKE 728 Query: 424 VSKEQRAIGKVMELALGYQ 442 ++ R I K + + Y+ Sbjct: 729 ITPNLRRIAKSINFGIIYR 747 >gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 900 Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 40/81 (49%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE RVLA ++ + + AF G+D++V T + F Sbjct: 664 IRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRTGQDVHVRTAMEIFGVDQAG 723 Query: 424 VSKEQRAIGKVMELALGYQGG 444 V+ E R K + + Y G Sbjct: 724 VTAEMRRRSKTINFGVIYGMG 744 >gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73] gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73] Length = 968 Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 31/174 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IAS G L+ AD + IE R+LA A +AF G+DI+ T ++ F ++ Sbjct: 725 IRAAFIASEGHILLSADYSQIELRILAHFADIGALKEAFLQGQDIHAMTASQMFGVAVEG 784 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK----STSTFEDWEQAE 479 + + R K + + Y G F +A+ G+ ++ ++ ED+ + Sbjct: 785 MPSDIRQRAKAINFGIIY--GISSF-GLANQLGISRKEAGNYIRLYFERFPGIEDYMEKT 841 Query: 480 S----HHLWMQD------QYPEF--------------AVKDKLIGTACELVKKA 509 HH +++ YPE A+ + G+A +++++A Sbjct: 842 KMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAINAPIQGSAADIIRRA 895 >gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 537 Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 40/81 (49%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G +V AD + IE RVLA ++ + + AF G+D++V T + F Sbjct: 404 IRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDAFRAGQDVHVRTAMEIFGVDQAG 463 Query: 424 VSKEQRAIGKVMELALGYQGG 444 V+ E R K + + Y G Sbjct: 464 VTAEMRRRSKTINFGVIYGMG 484 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 41/77 (53%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 ++ + G L+ AD + IE RV+A ++ + ++AF G DI+ T AK + +D+V Sbjct: 732 KAFVPEKEGWVLMSADYSQIELRVMAELSADPAMMEAFQEGHDIHQATAAKVYGVALDEV 791 Query: 425 SKEQRAIGKVMELALGY 441 E R K++ + Y Sbjct: 792 LPEMRRTAKMVNFGIIY 808 >gi|99035970|ref|ZP_01315014.1| hypothetical protein Wendoof_01000150 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 354 Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + +R IA G K++ AD + IE R+LA +A +AFANG+DI+ T + F + Sbjct: 102 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANGQDIHEITARQVFG--V 159 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++ ++ R K + + Y Sbjct: 160 QEIDEQLRRKAKSINFGIIY 179 >gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121] Length = 466 Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 26/148 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 182 LQKVISDDHRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 227 Query: 355 DPLG-LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +SD V ++ AD + IE RVLA I ++ +AF NG DI+ T Sbjct: 228 KAFKPTSSDSV-----------ILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATA 276 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 K F+ D+V R K + + Y Sbjct: 277 MKVFDVEADEVDSLMRRQAKAVNFGIVY 304 >gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] Length = 880 Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 32/157 (20%) Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344 KLN+ L+ + DGR+ G+ + TGR S QN+P R E +I Sbjct: 588 KLNSTYATGLAGYIRDDGRIHGSFN-QTITATGRISSTDPNLQNIPVRTEMGSKI----- 641 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 R + G V AD + IE RVLA ++G++ I+++ Sbjct: 642 --------------------RDIFVPKPGYVFVDADYSQIELRVLASMSGDEKLIESYHT 681 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 DI+ T A+ F+ P+DKV+ E R K + + Y Sbjct: 682 AADIHAATAAQVFHVPLDKVTPELRRNAKAVNFGVVY 718 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 16/155 (10%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GKKL+ D + IE R+LA + + + AF G DI++ T F + Sbjct: 674 IREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHDIHMQTAIALFGA---E 730 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 + +R I K + L Y G K ++ G+ ++ + ++ FE + + + Sbjct: 731 DASRKRNIAKTVNFGLLYGMGQ---KKLSDTLGITTKEAKEIIE--RYFETFPSVKGYFN 785 Query: 484 WMQDQYPEFAVKDKLI--------GTACELVKKAW 510 + +Q E + L+ G+A ++K A+ Sbjct: 786 GIVEQAKEIGYVETLLHRRRYFDFGSATPMLKAAY 820 >gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 857 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +RS + G LV D + IE R+LA ++ + I F + +DI+ T ++ F P D Sbjct: 617 IRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRTASEVFGVPFD 676 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E R+ K + + Y Sbjct: 677 EVTGELRSHAKAVNFGIIY 695 >gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] Length = 950 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 26/150 (17%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L V+ D GR+ + GA+ TGR + QN+P RS+E Sbjct: 663 DALQTHVNPDTGRVHTSYSIAGAN-TGRLASTDPNLQNIPV--RSDE------------- 706 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R +A+ G ++V D + IE R+LA +A AFA G DI+ Sbjct: 707 ---------GRRIREAFVATPGHRIVSLDYSQIELRILAHVANLPEMKAAFARGIDIHAM 757 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T ++ F P++ + R K + + Y Sbjct: 758 TASEMFGVPVEGMDPMVRRRAKAINFGVIY 787 >gi|168702959|ref|ZP_02735236.1| hypothetical protein GobsU_25749 [Gemmata obscuriglobus UQM 2246] Length = 209 Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R C A LV AD + E R+ A +A E + A+A+G D++ T A+ N D V Sbjct: 139 RRCFTARPEHPLVKADYSQTELRIAAKVAREKVMMAAYADGRDLHALTAARVLNKDEDAV 198 Query: 425 SKEQRAIGK 433 +K+ R + K Sbjct: 199 TKDDRQLAK 207 >gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1] gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1] Length = 956 Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 719 IRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEAT 778 Query: 424 VSKEQRAIGKVMELALGY 441 V QR K + + Y Sbjct: 779 VDANQRRAAKTVNFGVLY 796 >gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17] gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17] Length = 920 Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVVADLAG 383 PR R QT+ A R + +DP + + D +R C I G AD + Sbjct: 642 PRTGRIHTSFNQTVTATGRLSS-SDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQ 700 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ ++ I+AF G DI+ T A+ ++ I +V+ +R K + Y Sbjct: 701 IELRIMAHLSEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIY 758 >gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102] gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102] Length = 978 Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G +V AD + IE R+LA ++ E ++A+ ED++ T F +K Sbjct: 724 IRKAFLPEAGWLMVAADYSQIELRILAHLSQEPILVQAYQQNEDVHTVTGRLVFEK--EK 781 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ E+R I K + + Y G+ F Sbjct: 782 ITSEERGIAKTINFGVIYGMGSLRF 806 >gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] Length = 920 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 331 PRQERSEEILTQTIQALNRGETIADP----LGLASDC---VRSCIIASNGKKLVVADLAG 383 PR R QT+ A R + +DP + + D +R C I G AD + Sbjct: 642 PRTGRIHTSFNQTVTATGRLSS-SDPNLQNIPVRDDDGKEIRKCFIPEPGCLFFSADYSQ 700 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R++A ++ ++ I+AF G DI+ T A+ ++ I +V+ +R K + Y Sbjct: 701 IELRIMAHLSEDENMIEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIY 758 >gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi] gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi] Length = 909 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PID 422 +R NG + AD + IE +LA ++ ++ IKAF N +DI++ T +K F + Sbjct: 669 IRKAFKPENGNIFISADYSQIELAILAHLSQDETLIKAFENNKDIHIETASKLFKIEEKE 728 Query: 423 KVSKEQRAIGKVMELALGYQ 442 K++ R I K + + Y+ Sbjct: 729 KITPNLRRIAKSINFGIIYR 748 >gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245] gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245] Length = 943 Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%) Query: 360 ASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 A +R I SN L++ AD + IE R+ A I+G++ I+AF N EDI+ T F+ Sbjct: 697 AGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLIEAFRNREDIHRATAKVIFS 756 Query: 419 TPIDKVSKEQRAIGKVMELALGY 441 T D+++ + R K + + Y Sbjct: 757 T--DEITSDMRRKAKEVNFGVLY 777 >gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] Length = 1040 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + ++SDGR+ T A+ TGR S QN+P R+++ Sbjct: 752 VRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIP--ARTDD------------- 795 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R IA L+ AD + IE R++A ++G++ I AF +GED++ Sbjct: 796 ---------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHR 846 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + A F + V+ QR K L Y Sbjct: 847 SVAALVFGVAPEAVTATQRTHVKATSYGLAY 877 >gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1] gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1] Length = 1040 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + ++SDGR+ T A+ TGR S QN+P R+++ Sbjct: 752 VRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIP--ARTDD------------- 795 Query: 352 TIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R IA L+ AD + IE R++A ++G++ I AF +GED++ Sbjct: 796 ---------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHR 846 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + A F + V+ QR K L Y Sbjct: 847 SVAALVFGVAPEAVTATQRTHVKATSYGLAY 877 >gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium] Length = 942 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A I+G+ +AF G+DI+ T AK F V+KE R K + Sbjct: 715 LLSADYSQIELRIVASISGDKNMCEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSV 774 Query: 436 ELALGYQGGA 445 + Y GA Sbjct: 775 NFGIIYGQGA 784 >gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191] gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191] Length = 862 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 40/82 (48%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A GK L+ D + I+ R+LA + + + AF G DI+ T A+ F + Sbjct: 620 MLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSVLVNAFKEGGDIHTKTAAEVFGVMRE 679 Query: 423 KVSKEQRAIGKVMELALGYQGG 444 VS E R+ K + + Y G Sbjct: 680 MVSDEMRSSAKAINFGIIYGQG 701 >gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2] gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2] Length = 888 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G+ L+ D + IE R+LA + + ++AF G DI++ T K F + Sbjct: 653 IRYGFIAGEGRLLIGIDYSQIELRLLAHFSKDPALLEAFQKGRDIHMETAIKLFGK---E 709 Query: 424 VSKEQRAIGKVMELALGYQGGAK 446 +KE+R I K + L Y G++ Sbjct: 710 HAKEKRNIAKSINFGLIYGMGSR 732 >gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] Length = 857 Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust. Identities = 28/106 (26%), Positives = 55/106 (51%), Gaps = 4/106 (3%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +RS + G +++ D + IE R+LA ++ + I F +DI+ T ++ F+ P + Sbjct: 617 IRSLFVPGKGYDYILSGDYSQIELRLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWE 676 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 +V+ E+R+ K + + Y G F +A + G+ Q Q ++S Sbjct: 677 QVTPEERSHAKAVNFGIIY--GISDFG-LARNIGISRAQAKQYIES 719 >gi|289642848|ref|ZP_06474984.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] gi|289507325|gb|EFD28288.1| DNA-directed DNA polymerase [Frankia symbiont of Datisca glomerata] Length = 608 Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 19/189 (10%) Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 +T LA+DL RL S L ++ + F A+ +G V Sbjct: 297 TLTALARDLDTGRLTVSDQVRRMLTARGRVAATSNTIANLRSFLAAADP---AGRVHPQI 353 Query: 329 NLPRQERSEEILT-QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 N R + +T +Q L +G DP +R C A G L+ D + +E R Sbjct: 354 NTLRAKTGRMSITGPALQTLKKG----DPR------LRHCFQADPGHVLISCDFSQVEVR 403 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 V A ++ + A+G DI+ T F D +K+QR + K Y GGA+ Sbjct: 404 VTAALSRDPALTDVLASGVDIHDATARLLFG---DGFTKDQRTLAKRATFGTIYGGGARA 460 Query: 448 F--KTMASH 454 T A+H Sbjct: 461 LMNATGATH 469 >gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1] gi|737486|prf||1922368A DNA polymerase I Length = 921 Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 684 IRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQVLGLDEAT 743 Query: 424 VSKEQRAIGKVMELALGY 441 V QR K + + Y Sbjct: 744 VDANQRRAAKTVNFGVLY 761 >gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B] gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B] Length = 892 Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA ++ ++ +KAF + DI+ T AK F VS++ R +GK++ A Sbjct: 671 ADYSQIELRVLAHVSKDENLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFA 730 Query: 439 LGY 441 + Y Sbjct: 731 IIY 733 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 3/90 (3%) Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--N 418 S +R I LV AD + IE R+L ++ E ++A+ GED++ T F + Sbjct: 714 SQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPILLQAYQAGEDVHRVTAQMIFDRD 773 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 +P V+ +R IGK++ + Y GA+ F Sbjct: 774 SP-QAVTAAERRIGKIINFGVIYGMGAQRF 802 >gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 867 Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 1/79 (1%) Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I+S G +V AD + IE RVLA ++ + I++F N EDI++ T ++ F + Sbjct: 627 IRKAFISSFQGGYIVSADYSQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPE 686 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ E R K + + Y Sbjct: 687 EVTGEMRRRAKAVNFGIVY 705 >gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium] Length = 944 Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust. Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 1/83 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I ++ +++ AD + IE R++A + ++ ++AF NG DI+ T +K + I Sbjct: 705 IRKAFIPTDDDFVILSADYSQIELRLIAAFSQDETMMEAFNNGTDIHTATASKIYKIDIQ 764 Query: 423 KVSKEQRAIGKVMELALGYQGGA 445 +V+ + R + K A+ Y A Sbjct: 765 EVTADMRRMAKTANFAILYGSSA 787 >gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1] Length = 850 Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%) Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G V AD + IE RVLA ++ E ++AF NG DI+ T + F+ + V+ E R + Sbjct: 624 EGNVFVAADYSQIELRVLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVTPELRRV 683 Query: 432 GKVMELALGY 441 K++ L Y Sbjct: 684 AKMINFGLLY 693 >gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] Length = 898 Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA I + I AF +DI++ T K F + +++ R IGK++ A Sbjct: 677 ADYSQIELRVLAHITEDPNLINAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFA 736 Query: 439 LGYQGGAKVFKTMASHCGLDLQ 460 + Y G + +A GLD++ Sbjct: 737 IVY--GVSPY-GLAKRTGLDVK 755 >gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema pallidum] Length = 997 Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A+ G +L+ AD IE LA ++ + + AF DI+ T A FN ID Sbjct: 758 IRQAFQATVGHELISADYTQIELVALAHLSQDRNLLNAFRQHIDIHALTAAYIFNVSIDD 817 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V R I K + + Y G F+ Sbjct: 818 VQPAMRRIAKTINFGIVY--GMSAFR 841 >gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 866 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 331 PRQERSEEILTQTIQALNR---GETIADPLGLASD---CVRSCIIASNG-KKLVVADLAG 383 PR +R QT+ A R E + + ++ +R+ S+G L+ AD + Sbjct: 587 PRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSADYSQ 646 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R+LA ++ + ++AF +G+DI+ T ++ F P++ V+ + R K + + Y Sbjct: 647 IELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVY 704 >gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 867 Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 331 PRQERSEEILTQTIQALNR---GETIADPLGLASD---CVRSCIIASNG-KKLVVADLAG 383 PR +R QT+ A R E + + ++ +R+ S+G L+ AD + Sbjct: 588 PRTKRIHTSFNQTVTATGRLSSSEPNLQNIPVRTEEGRQIRALFEPSDGYDALMSADYSQ 647 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 IE R+LA ++ + ++AF +G+DI+ T ++ F P++ V+ + R K + + Y Sbjct: 648 IELRILAHLSEDKNFLEAFLHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVY 705 >gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 1009 Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust. Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 44/190 (23%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGR 319 +K+IL H +++L + + L + V D GR+ A+ TGR Sbjct: 689 VKTILEHRTLSKLKSTYV--------------DALPQLVRPDTGRVHTDFN-QAATGTGR 733 Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 S QN+P R E S +I R + G +V Sbjct: 734 LSSSNPNLQNIPIRTEFSRQI-------------------------RKAFLPKEGWLMVS 768 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA + E ++A+ +D++ T F + V+ ++R +GK + Sbjct: 769 ADYSQIELRILAHLTQEPVLVEAYKTNQDVHTVTAKLLFEK--ETVTPDERRLGKTINFG 826 Query: 439 LGYQGGAKVF 448 + Y GA+ F Sbjct: 827 VIYGMGAQRF 836 >gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] Length = 862 Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 61/148 (41%), Gaps = 27/148 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETI 353 L + + +DG++ T+ A++TGR S QN+ R E EI Sbjct: 579 LKKYIQADGKIH-TVYNQAATQTGRLSSSEPNLQNISVRDEEGREI-------------- 623 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R + G LV +D +E R+LA +A IKAF N DI+ T Sbjct: 624 -----------RKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIKAFQNEMDIHSQTA 672 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 F+ +++V+ QR K + + Y Sbjct: 673 MDLFDCSLEEVTPLQRRQAKTVNFGIVY 700 >gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] Length = 882 Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 25/139 (17%) Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ G S TGR S QN+P RSEE Sbjct: 607 GRIHSRFNQTGTS-TGRISSTEPNLQNIPI--RSEE----------------------GR 641 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +AS LV D + IE RVLA ++ + ++AF +G DI+ T ++ F+ + Sbjct: 642 LIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHGMDIHTKTASEVFHVDKE 701 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ R+ K + + Y Sbjct: 702 DVTDLLRSRAKAVNFGIVY 720 >gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus JKD6159] Length = 876 Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] Length = 1813 Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 43/90 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I + ++AD IE ++ A I ++ +KA+ N D++ T + I++ Sbjct: 1579 IREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINE 1638 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++KE R + K + L Y +T A+ Sbjct: 1639 INKEDRHVAKAINFGLLYGMNYVNLRTYAN 1668 >gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168] Length = 926 Score = 43.9 bits (102), Expect = 0.082, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A G +L+ AD + IE +LA ++G+ AF+ G D++ T A F D Sbjct: 687 IRLAFTAEPGCQLISADYSQIELVILAHLSGDPNLCAAFSGGTDVHRATAALIFGVQPDA 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 V+ + R K + + Y G F+ +A G+ Q ++ +++ Sbjct: 747 VTPDMRRTAKTINFGVMY--GMSAFR-LAGALGIPRTQAAEFIEA 788 >gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133] Length = 876 Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S] gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S] Length = 928 Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 32/151 (21%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 + L ++ D GR+ + GA +TGR S QN+P R E +I Sbjct: 641 DALQAQINKDSGRVHTSYSLSGA-QTGRLSSTDPNLQNIPIRTEVGRQI----------- 688 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R +A G ++ AD + IE R+ A +A +AFANGEDI+ Sbjct: 689 --------------RHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHA 734 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F +V+++ R K + A+ Y Sbjct: 735 ATAQQLFG----EVNRDTRGRAKTINFAILY 761 >gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] Length = 876 Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102] gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102] Length = 876 Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] Length = 876 Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] Length = 876 Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11] gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46] Length = 876 Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635] gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635] Length = 876 Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] Length = 876 Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948] gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765] gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus 132] gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754] gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus] gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948] gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20] gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765] gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754] gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus CGS01] gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131] gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 876 Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781] gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763] gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719] gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299] gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115] gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300] gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224] gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937] gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117] gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819] gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796] gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781] gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763] gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719] gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299] gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115] gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300] gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224] gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937] gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117] gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981] gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819] gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796] gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03] gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21172] Length = 876 Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] Length = 870 Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 27/154 (17%) Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGE 351 + L + ++ DGR+ + +RTGR S QN+P R E+ Sbjct: 584 DGLLKVIAPDGRIHSSFNQV-ETRTGRISSTEPNLQNIPVRSAEGREL------------ 630 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 R +A G LV AD + IE R+LA IA + I AF N EDI+ Sbjct: 631 -------------RRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTI 677 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 T ++ F P + V+ R+ K + + Y GA Sbjct: 678 TASQVFGMPPEYVTPIMRSRAKAVNFGIVYGIGA 711 >gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA] gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei] Length = 1808 Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/90 (24%), Positives = 43/90 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I + ++AD IE ++ A I ++ +KA+ N D++ T + I++ Sbjct: 1574 IREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKGINE 1633 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++KE R + K + L Y +T A+ Sbjct: 1634 INKEDRHVAKAINFGLLYGMNYVNLRTYAN 1663 >gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 876 Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99] Length = 875 Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 35/66 (53%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 ++ AD + IE RVLA I G+ +AF + ED++ TT K FN +V+ R K + Sbjct: 648 ILAADYSQIELRVLAHITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAV 707 Query: 436 ELALGY 441 + Y Sbjct: 708 NFGIVY 713 >gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00] Length = 876 Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] Length = 911 Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS + + G + AD + IE VLA ++ + +AF +G D++ T + F+ Sbjct: 672 IRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAFRSGGDVHRRTASLIFDVSEAD 731 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 VS EQR I K + + Y G F+ Sbjct: 732 VSSEQRRIAKTINFGVMY--GMSAFR 755 >gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH60] Length = 876 Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|261878885|ref|ZP_06005312.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] gi|270334465|gb|EFA45251.1| DNA-directed DNA polymerase I [Prevotella bergensis DSM 17361] Length = 261 Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust. Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I K AD + IE R++A ++ ++ ++AF G DI+ T +K + +D+ Sbjct: 22 IRKCFIPEPSCKFFSADYSQIELRIMAHLSCDENMMEAFREGFDIHRATASKIWKEAMDE 81 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 V+ QR K + Y G + +A G+D Sbjct: 82 VTDSQRKQAKQANFGIIY--GITTY-GLAQRMGID 113 >gi|157325093|ref|YP_001468518.1| gp138 [Listeria phage A511] gi|66733101|gb|AAY52919.1| gp138 [Listeria phage A511] Length = 730 Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + +E R+LA AG++ +AF +G D++ T + + P+DKV E R K + Sbjct: 434 LLQLDYSSLEMRILALAAGDEAMTQAFFDGADLHKETASIVWGMPVDKVPAEFRKKAKAV 493 Query: 436 ELALGYQGGAKVF---KTMASHCGLDL-QQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 + Y F M+ D+ Q++ N + TF D E+H ++D + Sbjct: 494 NFGIAYGETPFSFAPKHDMSVEEAEDIFQRYFANKPNIKTFID----ETHREALRDGF 547 >gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H] gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H] Length = 944 Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 42/78 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G L+ AD + IE R+LA +A + ++AF G+DI+ T ++ F P++ Sbjct: 705 IRKAFVATPGCVLLSADYSQIELRLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEG 764 Query: 424 VSKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 765 MDPLTRRRAKAINFGIIY 782 >gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ST398] Length = 876 Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] Length = 876 Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|108563870|ref|YP_628186.1| DNA polymerase I [Helicobacter pylori HPAG1] gi|107837643|gb|ABF85512.1| DNA polymerase I [Helicobacter pylori HPAG1] Length = 899 Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 109/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQ-TYALRMYLFLITGIDL 253 +G++ID +L++ E K L+ I+ L D + S +Q + L L L Sbjct: 522 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGVDFNLNSPKQLSEVLYEKLELPQNKSH 581 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L ++ + +L+L D ++ T Sbjct: 582 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 635 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 636 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 670 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F + +KE+R+I Sbjct: 671 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDL---AKEKRSI 727 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 728 AKSINFGLVYGMGSK 742 >gi|317181153|dbj|BAJ58939.1| DNA polymerase I [Helicobacter pylori F32] Length = 893 Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKSR 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|313905698|ref|ZP_07839059.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469522|gb|EFR64863.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 103 Score = 43.9 bits (102), Expect = 0.092, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ ID++T S + K G + YAE + I L + D PV ++D +P ++L Sbjct: 2 MKEMSIDLKTYSDVNITKCGAYKYAESDEFEILLFGVSVDGGPVTVYDLACGDTIPEEIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL 84 L DE V A N+ FER+ L Sbjct: 62 AALSDENVTKWAFNASFERVCLSNWL 87 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G ++ AD + IE R+ A +A +AFANGEDI+ T + F + Sbjct: 688 IRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHAATAQQLFG----E 743 Query: 424 VSKEQRAIGKVMELALGY 441 V+++ R K + A+ Y Sbjct: 744 VNRDTRGRAKTINFAILY 761 >gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603] gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603] Length = 876 Score = 43.9 bits (102), Expect = 0.093, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISEDNRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S S I++ AD + IE RVLA I ++ +AF NG DI+ T Sbjct: 638 KAFKPTS--TDSVILS--------ADYSQIELRVLAHITQDESMKEAFINGHDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F+ D+V R K + + Y Sbjct: 688 KVFDVGADEVDSLMRRQAKAVNFGIVY 714 >gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] Length = 876 Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDSLMRRQAKAVNFGIVY 714 >gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802] gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802] Length = 972 Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I LV AD + IE R+LA ++ E ++A+ N +D++ T F+ + Sbjct: 719 IRQAFIPQENWLLVSADYSQIELRILAHLSQEVVLLEAYRNNQDVHSVTAKLLFDK--ET 776 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ ++R +GK + + Y GA+ F Sbjct: 777 ITPQERNLGKTINFGVIYGMGAQRF 801 >gi|317178174|dbj|BAJ55963.1| DNA polymerase I [Helicobacter pylori F16] Length = 893 Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKSH 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] Length = 891 Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 72/181 (39%), Gaps = 39/181 (21%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L+ +L+H ++T+L + + L + V+ DGR+ T A+ TGR Sbjct: 587 LEHLLAHRDVTRLRQ---------------TVEGLQKTVAPDGRIHTTYAQTIAA-TGRL 630 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + S + + CV + L+ AD Sbjct: 631 SSADPNLQNIPIRTESGRRIREAF------------------CVGPGF-----ETLLTAD 667 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ + I+AF GED + AK F+ + RA K M L Sbjct: 668 YSQIEMRIMAHLSEDAGLIEAFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAMNYGLA 727 Query: 441 Y 441 Y Sbjct: 728 Y 728 >gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] Length = 930 Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKL-VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + N +L + AD + IE R+LA ++ + I+AF +DI+ T A+ F Sbjct: 682 IRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTNLIQAFQEQQDIHTQTAAQVFEVEST 741 Query: 423 KVSKEQRAIGKVMELALGY 441 +V++E R+ K + + Y Sbjct: 742 QVTREMRSHAKAVNFGIVY 760 >gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106] gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106] Length = 927 Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 1/86 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PID 422 +R + G LV AD + IE R+LA ++ E ++A+ DI+ T F I Sbjct: 670 IRQAFLPEPGWLLVSADYSQIELRILAHLSDEPILVEAYKTNRDIHTVTAQFLFEKDDIK 729 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF 448 V+ E+R GK + + Y GA F Sbjct: 730 DVTPEERRFGKTINFGVIYGMGALRF 755 >gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] Length = 945 Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ + AS ++ AD + IE R++A ++G+ AF G DI+ T A+ + P D Sbjct: 706 IRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREGRDIHTETAARVYGIPRD 765 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 766 QVDAVMRRAAKTVNFGIIY 784 >gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511] gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511] Length = 904 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 78/309 (25%), Positives = 126/309 (40%), Gaps = 59/309 (19%) Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQT-------------INDRGYRIDLDLVLK 208 Y D ATR+L+ RL L LL + + G R+D + Sbjct: 475 YAAEDAWATRQLYFRLTELFKKGGLEHLLKEAKEVEFPFINVLIAMERLGIRVDTKHLRS 534 Query: 209 LQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDL-------VDMSEG 259 L+E ++ E +L ++I L T+ I+S++Q L LF G+ +E Sbjct: 535 LKEELSAELARLTQEIHTLAGTEFNIKSTQQ---LGNVLFGTLGLKGGKKTKTGYSTNES 591 Query: 260 TLKSILSHSNITQLAKDLILNR--LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 L++++ I + + ++ L++ +LKL +GR+ T G + T Sbjct: 592 VLRNLIGEHPIVEKILEYREHQKMLSTYVDPLLKLAE----KDPEGRIHTTFVQTGTA-T 646 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR + QN+P RSE L R VR +A G +L Sbjct: 647 GRLASKDPNLQNIPV--RSE---------LGR-------------RVRRAFVAQEGFRLA 682 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE R+LA +G+ +AF GEDI++ T K F P + +K R K + Sbjct: 683 SIDYSQIELRLLAHFSGDAALREAFEKGEDIHMATAIKLFG-PEEAAAK--RNFAKSINF 739 Query: 438 ALGYQGGAK 446 L Y G++ Sbjct: 740 GLLYGMGSR 748 >gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] Length = 950 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA ++ AD + IE R++A ++ + I F +DI+ TT ++ F T + Sbjct: 711 IRQAFIAPENSLIISADYSQIELRIMAHLSRDLKLINDFLEEKDIHTTTASEIFVTSLHL 770 Query: 424 VSKEQRAIGKVMELALGY 441 V+ EQR K + L Y Sbjct: 771 VTGEQRQRAKTVNFGLIY 788 >gi|294890673|ref|XP_002773257.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] gi|239878309|gb|EER05073.1| DNA polymerase I, putative [Perkinsus marinus ATCC 50983] Length = 643 Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 55/129 (42%), Gaps = 19/129 (14%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+PR E++ +++ + P+ L S C L Sbjct: 361 TGRLSSSNPNLQNIPRSHEFEDLGVISLR-----KAFISPI-LDSHC------------L 402 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFA-NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 V D +E RVLA G ++F+ +G DIY A + V+KE+R KV Sbjct: 403 VSVDYRQVEIRVLAHFVGPGALRRSFSVDGADIYTNMAAMILRKAANDVTKEERNKAKVC 462 Query: 436 ELALGYQGG 444 LAL Y G Sbjct: 463 CLALVYGSG 471 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 2/86 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G + AD + IE +LA ++ + +AF GED++ T + F P + Sbjct: 658 IREAFVPQRGWWFLSADYSQIELVILAHLSEDPALCRAFREGEDVHRATGSLLFGVPPEA 717 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFK 449 V+ EQR I K + + Y G F+ Sbjct: 718 VTPEQRRIAKTINFGVIY--GMSAFR 741 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I + L+ AD + IE R+LA ++ E ++A+ NG+D++ T D+ Sbjct: 701 IRAAFIPESSWILMAADYSQIELRILAHLSQEPRLLEAYRNGQDVHTLTAQLLLEK--DQ 758 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ E+R + K++ + Y G F Sbjct: 759 IAAEERRLAKIINFGVIYGMGPHRF 783 >gi|145346862|ref|XP_001417901.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578129|gb|ABO96194.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 671 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 35/184 (19%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA-SRTGR 319 L+S++ H + Q+ ++ +R A A+ S +++DGR R Q+ + TGR Sbjct: 330 LQSLVKHHHFAQI---VLNHRGALKERAMCDNYDKSAVIAADGRARIHTQWNNTKTATGR 386 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S P IQ + RG +R+C +A G+ + A Sbjct: 387 LSSS--HPN---------------IQQVGRG------------TMRNCFVAPTGRTFIAA 417 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGE-DIYVTTYAKAFNTPIDK-VSKEQRAIGKVMEL 437 D + IE RVLA ++G+D I + D++V + P+D K R I K Sbjct: 418 DYSQIELRVLAHLSGDDRLISLLRQAKGDVFVAIWNAGKGLPLDAPAEKSTRDIAKRTAY 477 Query: 438 ALGY 441 + Y Sbjct: 478 GIVY 481 >gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] Length = 884 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%) Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAIG 432 K++ +D + IE RVLA IAG+ I+AF N DI+ T + F + P D V+ E R Sbjct: 655 KILSSDYSQIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNP-DDVTSEMRRQA 713 Query: 433 KVMELALGY 441 K + + Y Sbjct: 714 KAVNFGIVY 722 >gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] Length = 877 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 25/119 (21%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DG++ T ++TGR S QN+P + L G I Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R + S L+ +D + IE RVLA I+G++ I AF +G DI+ +T + F Sbjct: 638 ------RKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF 690 >gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 936 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 41/82 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +V AD + IE R++A ++ + I F + +DI+ T ++ F T + Sbjct: 697 IRQAFIAPKNFLIVAADYSQIELRIMAHLSQDIELINDFLSEKDIHTATASEIFVTALHL 756 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 V+ EQR K + L Y A Sbjct: 757 VTDEQRQRAKTINFGLIYGMSA 778 >gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] Length = 944 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 65/237 (27%), Positives = 104/237 (43%), Gaps = 50/237 (21%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ID+D++ L +++ L+ +I +L T+ I SS+Q L LF D + Sbjct: 560 GMLIDIDILKTLSSTFSEKVSVLENEIYRLAGTEFNIASSKQ---LGTVLF-----DKMG 611 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAI-----LKL-NTLSEAV-----SSDGR 304 + + S S+S ++ DL+ N + + + KL +T ++A+ S+ GR Sbjct: 612 IKKSKKLSSGSYSTDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDALGKQINSNSGR 671 Query: 305 LRGTLQFYG--ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 + FY ++ TGR S QN+P RSEE + Sbjct: 672 IH---TFYSMISTATGRLSSSNPNLQNIPI--RSEE----------------------GN 704 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A G KLV AD + IE R++A IAG AF +DI+ T + F T Sbjct: 705 AIRRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQDIHSITAEQIFCT 761 >gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] Length = 885 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + S+ G ++ +D + +E RVLA I G+ + F NGEDI+ +T + F+ P Sbjct: 643 LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPA 702 Query: 422 D-KVSKEQRAIGKVMELALGY 441 D ++ + R K + + Y Sbjct: 703 DAEIDRNMRRRAKAVNFGIVY 723 >gi|261838745|gb|ACX98511.1| DNA polymerase I [Helicobacter pylori 51] Length = 885 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q + + Sbjct: 508 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGADFNLNSPKQLSEILYEKLELPKNKSH 567 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 568 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 621 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 622 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 656 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 657 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 713 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 714 AKSINFGLVYGMGSK 728 >gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56] Length = 877 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 25/119 (21%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DG++ T ++TGR S QN+P + L G I Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R + S L+ +D + IE RVLA I+G++ I AF +G DI+ +T + F Sbjct: 638 ------RKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF 690 >gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24] Length = 905 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 109/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQT-YALRMYLFLITGIDL 253 +G++ID +L++ E L+ I+ L D + S +Q L L L Sbjct: 528 QGFKIDAPYFKRLEQEFKNELNVLERQILDLIGVDFNLNSPKQLGEVLYEKLGLPKNKSH 587 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L ++ + +L+L D ++ T Sbjct: 588 STDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 641 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 642 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 676 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F ++++KE+R+I Sbjct: 677 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EELAKEKRSI 733 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 734 AKSINFGLVYGMGSK 748 >gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I Length = 891 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 45/258 (17%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q L L+ G+ Sbjct: 514 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQ---LSEVLYDKLGLPKN 570 Query: 255 DMSEGTLKSILS----HSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTL 309 KS+L H +I + + LN+L ++ + +L+L D ++ T Sbjct: 571 KSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTF 624 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S QN+P + P GL +R I Sbjct: 625 IQTGTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFI 659 Query: 370 ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 AS+ + L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+ Sbjct: 660 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEK 716 Query: 429 RAIGKVMELALGYQGGAK 446 R+I K + L Y G+K Sbjct: 717 RSIAKSINFGLVYGMGSK 734 >gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695] gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695] Length = 892 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 45/258 (17%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q L L+ G+ Sbjct: 515 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQ---LSEVLYDKLGLPKN 571 Query: 255 DMSEGTLKSILS----HSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTL 309 KS+L H +I + + LN+L ++ + +L+L D ++ T Sbjct: 572 KSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTF 625 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S QN+P + P GL +R I Sbjct: 626 IQTGTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFI 660 Query: 370 ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 AS+ + L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+ Sbjct: 661 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEK 717 Query: 429 RAIGKVMELALGYQGGAK 446 R+I K + L Y G+K Sbjct: 718 RSIAKSINFGLVYGMGSK 735 >gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] Length = 877 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 25/119 (21%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DG++ T ++TGR S QN+P + L G I Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R + S L+ +D + IE RVLA I+G++ I AF +G DI+ +T + F Sbjct: 638 ------RKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVF 690 >gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917] gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917] Length = 996 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 74/310 (23%), Positives = 120/310 (38%), Gaps = 56/310 (18%) Query: 162 YCKRDVEATRELF-----------KRLIPLSDG-----ERDLWLLDQTINDRGYRIDLDL 205 YC DV TR L RL+PL D E L L++ T G RID Sbjct: 547 YCGMDVHLTRRLALDLRQQLAAMGPRLLPLLDQVELPLEPVLALMEAT----GIRIDHPY 602 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + L +AQ ++L+ + K G+ + L LF G+D Sbjct: 603 LAALSTEMAQTLERLETE-AKQAAGMEFNLASPKQLGELLFDTLGLDRKKSRRTKTGYST 661 Query: 266 SHSNITQLAKD-----LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGR 319 + + +L +D L+L S ++ L + V ++ GR+ + TGR Sbjct: 662 DATVLEKLEQDHPVVPLVLEHRTLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGR 720 Query: 320 WSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 S QN+P R E S I R + G +L+ Sbjct: 721 LSSSNPNLQNIPVRTEFSRRI-------------------------RKAFLPQAGWQLLS 755 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+L ++GE+ +A+ +G+D++ T V+ ++R +GK + Sbjct: 756 ADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLEK--KAVTADERRLGKTINFG 813 Query: 439 LGYQGGAKVF 448 + Y GA+ F Sbjct: 814 VIYGMGAQRF 823 >gi|217033899|ref|ZP_03439323.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10] gi|216943662|gb|EEC23107.1| hypothetical protein HP9810_870g31 [Helicobacter pylori 98-10] Length = 891 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q + + Sbjct: 514 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGADFNLNSPKQLSEILYEKLELPQNKSR 573 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 574 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 627 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 628 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 662 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 663 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 719 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 720 AKSINFGLVYGMGSK 734 >gi|225848519|ref|YP_002728682.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] gi|225643280|gb|ACN98330.1| DNA polymerase I [Sulfurihydrogenibium azorense Az-Fu1] Length = 586 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 62/151 (41%), Gaps = 32/151 (21%) Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL LS+ V + R+ G + GAS TGR S QN+P+ Sbjct: 310 KLEELSKYVK-NSRVYGEFKQIGAS-TGRMSSYKPNLQNIPKN----------------- 350 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 ++S A +G ++AD + IE R+ A + IKAF +D++ Sbjct: 351 -------------LKSIFRAPDGYLFIIADYSQIELRIAAEYTKDKSMIKAFQEKKDLHK 397 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + +++KE+R + K + L Y Sbjct: 398 LTASVITGKDYQEITKEERNLAKAINFGLIY 428 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R ER E VR I N Sbjct: 673 TGRLSSNNPNLQNIPIRTERGRE-------------------------VRKAFIPRNDDH 707 Query: 376 LVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 ++V AD + IE R++A I+ + + AF G DI+ T AK + +D+V R K Sbjct: 708 VIVSADYSQIELRIIAEISKDANMMDAFIQGIDIHTATAAKVYGKTLDEVDGTMRRNAKA 767 Query: 435 MELALGY 441 + + Y Sbjct: 768 VNFGIIY 774 >gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] Length = 926 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E DG+L + A+ TGR S QN+P I T+ + RG Sbjct: 638 VEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIP-------IRTE----VGRG- 684 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R+ + N + + + AD + IE R++A ++ ++ I+AF +GEDI+ Sbjct: 685 ------------LRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFLHGEDIHR 732 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T +K + P+ +V+ + R K + Y Sbjct: 733 ATASKIYRLPLVEVTDDMRRRAKTANFGIIY 763 >gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A] gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A] Length = 986 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + KL+ AD + IE R+L ++GE+ A+ ED++ T F D Sbjct: 731 IRKAFLPQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKLLFEK--DA 788 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 + ++R IGK + + Y GA+ F Sbjct: 789 IDADERRIGKTINFGVIYGMGAQRF 813 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 17/128 (13%) Query: 331 PRQERSEEILTQTIQALNRGET---------IADPLGLASDCVRSCIIASNGKKLVV-AD 380 PR R Q I A R + I PLG +R I ++ + L++ AD Sbjct: 659 PRTGRVHTSFNQHITATGRLSSSNPNLQNIPIRTPLGRE---IRKAFIPTDPRNLLLSAD 715 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+ A I+G+ I+AF N EDI+ T F+TP ++ + R K E+ G Sbjct: 716 YSQIELRIAAEISGDGKLIEAFRNREDIHSATARVIFDTP--DITPDMRR--KAKEVNFG 771 Query: 441 YQGGAKVF 448 G + F Sbjct: 772 VLYGIQPF 779 >gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912] gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912] Length = 890 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 42/77 (54%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 ++ I + +G K+V AD + IE RVLA + + ++AF + DI+ T A+ F P ++V Sbjct: 652 QAFIPSESGWKIVSADYSQIELRVLAHFSKDPALVQAFRDDLDIHARTAAEVFEVPQEQV 711 Query: 425 SKEQRAIGKVMELALGY 441 + R K + + Y Sbjct: 712 TPGMRRQAKAVNFGIVY 728 >gi|261840144|gb|ACX99909.1| DNA polymerase I (polA) [Helicobacter pylori 52] Length = 889 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I+ L D + S +Q + + Sbjct: 512 QGFKIDAPYFKRLEQEFKHELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPKNKSH 571 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 572 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 625 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 626 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 660 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 661 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 717 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 718 AKSINFGLVYGMGSK 732 >gi|209972970|ref|YP_002300417.1| gp31 [Bacillus phage SPO1] gi|209871290|gb|ACI91046.1| gp31 [Bacillus phage SPO1] Length = 925 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 41/75 (54%) Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 +G +V D + +E R+LA I + I + +G D++ + AF I++VSK+QR Sbjct: 628 DGGVIVQFDYSQLELRILAVITQDPTLIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTA 687 Query: 432 GKVMELALGYQGGAK 446 K ++ + YQ A+ Sbjct: 688 SKKIQFGIVYQESAR 702 >gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1040 Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++G++ I AF +GED++ + A F + V+ QR K Sbjct: 812 LMTADYSQIEMRIMAHLSGDEGLIAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKAT 871 Query: 436 ELALGY 441 L Y Sbjct: 872 SYGLAY 877 >gi|317182675|dbj|BAJ60459.1| DNA polymerase I [Helicobacter pylori F57] Length = 893 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 64/258 (24%), Positives = 110/258 (42%), Gaps = 45/258 (17%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q L L+ G+ Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQ---LSEILYEKLGLPKN 572 Query: 255 DMSEGTLKSILS----HSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTL 309 KS+L H +I + + LN+L ++ + +L+L D ++ T Sbjct: 573 KSHSTDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTF 626 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S QN+P + P GL +R I Sbjct: 627 IQTGTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFI 661 Query: 370 ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 AS+ + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+ Sbjct: 662 ASSKEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEK 718 Query: 429 RAIGKVMELALGYQGGAK 446 R+I K + L Y G+K Sbjct: 719 RSIAKSINFGLVYGMGSK 736 >gi|163814577|ref|ZP_02205966.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC 27759] gi|158450212|gb|EDP27207.1| hypothetical protein COPEUT_00728 [Coprococcus eutactus ATCC 27759] Length = 115 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S PL K G + Y E I L AY+ D++PV++ D +P ++ Sbjct: 1 MKTLSIDIETYSDVPLQKTGAYRYVESPNFEILLFAYSTDNQPVQVIDPACGEQIPKEVF 60 Query: 59 QYLRDETVM 67 L DE V+ Sbjct: 61 LALEDEFVI 69 >gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] Length = 986 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + KL+ AD + IE R+L ++GE+ A+ ED++ T F D Sbjct: 731 IRKAFLPQKDWKLLSADYSQIELRILTHLSGEEVLKNAYLKNEDVHSLTAKILFEK--DA 788 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 + ++R IGK + + Y GA+ F Sbjct: 789 IDADERRIGKTINFGVIYGMGAQRF 813 >gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] Length = 885 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 2/81 (2%) Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + S+ G ++ +D + +E RVLA I G+ + F NGEDI+ +T + F+ P Sbjct: 643 LIRKAFVPSHAGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPA 702 Query: 422 D-KVSKEQRAIGKVMELALGY 441 D ++ + R K + + Y Sbjct: 703 DAEIDRNMRRRAKAVNFGIVY 723 >gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83] gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83] Length = 926 Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 26/151 (17%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E DG+L + A+ TGR S QN+P I T+ + RG Sbjct: 638 VEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIP-------IRTE----VGRG- 684 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R+ + N + + + AD + IE R++A ++ ++ I+AF +GEDI+ Sbjct: 685 ------------LRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFLHGEDIHR 732 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T +K + P+ +V+ + R K + Y Sbjct: 733 ATASKIYRLPLVEVTDDMRRRAKTANFGIIY 763 >gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] Length = 834 Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 38/78 (48%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G LV AD + IE RVLA ++G++ + F DI+ T + F P + Sbjct: 597 IRRAFVAEPGYVLVAADYSQIELRVLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEA 656 Query: 424 VSKEQRAIGKVMELALGY 441 V +R K + + Y Sbjct: 657 VDPFRRRAAKTVNFGVLY 674 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I+ LV AD + IE R+LA ++ E +KA+ + +DI+ + F+ ++ Sbjct: 702 IRKAFISPKKWLLVSADYSQIELRILAHLSQEPLLVKAYCDCQDIHTLSAQLLFDK--EE 759 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ E+R +GK + + Y G++ F Sbjct: 760 ITIEERNLGKTINFGVIYGMGSQRF 784 >gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] Length = 900 Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA +G KLV D + IE R+LA + + + AF + DI+ T K F ++ Sbjct: 666 IRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKALVDAFNSDLDIHSQTAVKIFG---EE 722 Query: 424 VSKEQRAIGKVMELALGYQGGAK 446 + ++R I K + L Y G+K Sbjct: 723 KASQKRNIAKTINFGLLYGMGSK 745 >gi|317179646|dbj|BAJ57434.1| DNA polymerase I [Helicobacter pylori F30] Length = 893 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKSH 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|308183570|ref|YP_003927697.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4] gi|308065755|gb|ADO07647.1| DNA polymerase I (polA) [Helicobacter pylori PeCan4] Length = 893 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I+ L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|50365399|ref|YP_053824.1| DNA polymerase I [Mesoplasma florum L1] gi|50363955|gb|AAT75940.1| DNA polymerase I [Mesoplasma florum L1] Length = 895 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDK 423 R I++N K D + IE RVLA + ED + F N D++ K F ++ Sbjct: 644 RKIFISNNDTKFFSFDYSQIELRVLAQLGQEDTLLNIFKNDRDVHAEAARKIFKLEENEE 703 Query: 424 VSKEQRAIGKVMELALGY 441 ++ +QR I KV + Y Sbjct: 704 ITSDQRRIAKVFNFGIIY 721 >gi|297380674|gb|ADI35561.1| DNA polymerase I [Helicobacter pylori v225d] Length = 827 Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I+ L D + S +Q + + Sbjct: 450 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 509 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 510 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 563 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 564 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 598 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 599 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 655 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 656 AKSINFGLVYGMGSK 670 >gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810] gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810] Length = 904 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A G + L+ AD + IE R++A ++ + I+AF +GED++ ++ F D Sbjct: 663 IRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFNSGEDLHNFVASRVFGVSPD 722 Query: 423 KVSKEQRAIGKVMELALGY 441 V R+ K + L Y Sbjct: 723 AVDPAMRSKTKAVSYGLAY 741 >gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1] gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax] Length = 1860 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 36/78 (46%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I ++AD IE ++ A I +D +KA+ N D++ T + I Sbjct: 1626 IREIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKKAIAD 1685 Query: 424 VSKEQRAIGKVMELALGY 441 V+KE R I K + L Y Sbjct: 1686 VNKEDRHIAKAINFGLIY 1703 >gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277] gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277] Length = 863 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 LA D VR C A + V D + IE R+LA + ++ ++AFAN EDI+ T F Sbjct: 627 ALAKD-VRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALLRAFANDEDIHARTAISIF 685 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA 445 + + RA+ K + L Y G+ Sbjct: 686 GS----AEGQNRAVAKSINFGLIYGMGS 709 >gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2] gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2] Length = 878 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + DG++ Q + TGR S QN+P + L G I Sbjct: 594 LLKEIHEDGKIHTRFQ-QALTTTGRLSSINPNLQNIPVR-------------LEEGRKIR 639 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + + G +V AD + IE RVLA ++ ++ ++AF + DI+ TT + Sbjct: 640 ----------KAFVPSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTAS 689 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 F+ ++V+ + R K + + Y Sbjct: 690 DVFHVTEEEVTSDMRRAAKAVNFGIVY 716 >gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B] gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B] Length = 910 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE R++A ++ + I+AF +G D + T A F + Sbjct: 669 IRQAFVVGKGYEALLTADYSQIEMRIMAHLSQDQALIEAFRSGFDFHAATAASVFGVRPE 728 Query: 423 KVSKEQRAIGKVMELALGY 441 +V E R K M L Y Sbjct: 729 QVDAEMRRRVKAMNYGLAY 747 >gi|297180888|gb|ADI17092.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured gamma proteobacterium HF0070_03O15] Length = 454 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 82/213 (38%), Gaps = 50/213 (23%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + ++ + +S+DG +R + GA TGR S Q +PR Sbjct: 174 IESIQDKMSNDGFVRASYMQLGAD-TGRMSSIKPNNQQIPRDSE---------------- 216 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 R C+ A G K+V AD + +E R+ A +A + AF GED++ Sbjct: 217 ------------FRQCVQAPQGWKIVDADFSQMELRLAAALAKDKNMTAAFQRGEDLHDY 264 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK---- 467 T A D R I K L Y GA+ + A G+ + + VK Sbjct: 265 T---AEQMGCD------RQIAKSANFGLLYGAGAEGLRKYAGSSGV-IMTNDEAVKIRDN 314 Query: 468 ---STSTFEDWEQAESHHLWMQ---DQYPEFAV 494 + S DW Q E ++L D++PE V Sbjct: 315 WLTTYSGIRDW-QREMNYLSRSTEGDEWPETRV 346 >gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 891 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 80/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDIKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D D + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTDRLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672] gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672] Length = 791 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 80/186 (43%), Gaps = 42/186 (22%) Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASR 316 E LKSIL + ++L +++ S LS+ + S GR+ + G + Sbjct: 484 ENLLKSILKYREFSKL--------ISTYTSK------LSDYIDRSTGRIHTQFKQTGTA- 528 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P+ +GE L S+ +RS ++ G Sbjct: 529 TGRLSSVNPNLQNIPQ----------------KGE-------LGSE-IRSAFVSKEGYSF 564 Query: 377 VVADLAGIEARVLAWIA-GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + D + IE R+LA I+ E+ KI AF DI+ T K F +++++ R I K + Sbjct: 565 LSIDYSQIELRILAHISDDENLKI-AFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAV 623 Query: 436 ELALGY 441 + Y Sbjct: 624 NFGIIY 629 >gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri] Length = 869 Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR + S+ ++++ D + IE R+LA ++ + I AF N EDI+ T K FN D Sbjct: 629 VRKIFVVSSPDNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIFNLSKD 688 Query: 423 KVSKEQRAIGKVMELALGY 441 +++ R K + + Y Sbjct: 689 EITPNIRRSAKAVNFGIIY 707 >gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421] gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421] Length = 938 Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G LV AD + IE R+LA + E ++AF G D++ T ++ Sbjct: 703 IRRAFVPEPGWLLVAADYSQIELRILAHLTQEPVLLEAFQTGGDVHTLTARLLLGR--EE 760 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V+ E+R + K++ + Y GA+ F Sbjct: 761 VTSEERRLAKIINYGVVYGMGARRF 785 >gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228] Length = 880 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 27/127 (21%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P R E EI R I S Sbjct: 609 TGRLSSTEPNLQNIPIRTEEGREI-------------------------RKAFIPSRSDM 643 Query: 376 LVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 +++A D + IE RV A ++G+ +AF N DI+ T A+ F + V+ + R KV Sbjct: 644 ILLAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTETAAEVFEVKAEAVTPDLRRHAKV 703 Query: 435 MELALGY 441 + + Y Sbjct: 704 INFGIAY 710 >gi|302520988|ref|ZP_07273330.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302429883|gb|EFL01699.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 565 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 VR ++A G +LVVAD A +E R+LA +AG+ + A +D+Y +AF Sbjct: 328 VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 382 >gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122] gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122] Length = 876 Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISDDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ +AF NG+DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESMKEAFINGDDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V R K + + Y Sbjct: 688 KVFGVEADQVDILMRRQAKAVNFGIVY 714 >gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1] Length = 968 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G L+ AD + IE R+LA IA +AFA +DI+ T ++ F ++ Sbjct: 725 IRTAFIAPKGCVLLSADYSQIELRILAHIANITALKEAFAQDQDIHAITASQIFGVAVEG 784 Query: 424 VSKEQRAIGKVMELALGY 441 + + R K + + Y Sbjct: 785 MPSDIRRRAKAINFGIIY 802 >gi|318061874|ref|ZP_07980595.1| bifunctional 3'-5' exonuclease/DNA polymerase [Streptomyces sp. SA3_actG] Length = 555 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 VR ++A G +LVVAD A +E R+LA +AG+ + A +D+Y +AF Sbjct: 318 VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDTALLDVAAKADDLYAAVSDRAF 372 >gi|188528242|ref|YP_001910929.1| DNA polymerase I (polA) [Helicobacter pylori Shi470] gi|188144482|gb|ACD48899.1| DNA polymerase I (polA) [Helicobacter pylori Shi470] Length = 893 Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I+ L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKDELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|308064229|gb|ADO06116.1| DNA polymerase I (polA) [Helicobacter pylori Sat464] Length = 893 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I+ L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|163784119|ref|ZP_02179064.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159880610|gb|EDP74169.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 374 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 40/78 (51%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R S G ++VAD + IE R+ A ++ I AF G+D++ T + ++ Sbjct: 139 LRVLFRPSKGYSMIVADYSQIELRIAAEYTNDEVMINAFKEGKDLHRFTASLITGKSYEE 198 Query: 424 VSKEQRAIGKVMELALGY 441 ++KE+R + K + L Y Sbjct: 199 ITKEERQLAKAINFGLIY 216 >gi|308062734|gb|ADO04622.1| DNA polymerase I (polA) [Helicobacter pylori Cuz20] Length = 893 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I+ L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEILYEKLELPQNKSR 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] Length = 878 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S+D R+ ++TGR S QN+P + L G I Sbjct: 594 LQKVISNDKRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 639 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +S+ S I++ AD + IE RVLA I +D +AF +G+DI+ T Sbjct: 640 KAFKPSSE--DSVILS--------ADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATAR 689 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F ++V+ R K + + Y Sbjct: 690 KVFGVEAEEVTDLMRRQAKAVNFGIVY 716 >gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 866 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A L++A D + I+ R LA I+G++ I+ F +G DI+ T + F+ P++ Sbjct: 626 IRQAFVAPGPDWLIMAADYSQIDLRSLAHISGDERLIETFKSGVDIHTRTAVEIFHVPVE 685 Query: 423 KVSKEQRAIGKVMELALGY 441 V E R K + + Y Sbjct: 686 WVDSELRRRAKAVNFGIIY 704 >gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119] gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119] Length = 878 Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S+D R+ ++TGR S QN+P + L G I Sbjct: 594 LQKVISNDKRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 639 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +S+ S I++ AD + IE RVLA I +D +AF +G+DI+ T Sbjct: 640 KAFKPSSE--DSVILS--------ADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATAR 689 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F ++V+ R K + + Y Sbjct: 690 KVFGVEAEEVTDLMRRQAKAVNFGIVY 716 >gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115] Length = 926 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 689 IRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQS 748 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + + Y Sbjct: 749 VTSTQRRAAKTVNFGVLY 766 >gi|254797027|ref|YP_003081864.1| DNA polymerase I [Neorickettsia risticii str. Illinois] gi|254590261|gb|ACT69623.1| DNA polymerase I [Neorickettsia risticii str. Illinois] Length = 816 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A G + AD + IE R+LA+IA + A A+G D++ T ++ F T DK Sbjct: 580 IRKIFTAKEGHYFLCADYSQIELRILAYIANVERLKCALASGTDLHTLTASQIFKT--DK 637 Query: 424 VSKEQRAIGKVMELALGY 441 ++ R K + + Y Sbjct: 638 ITPNLRNKAKAVNFGIVY 655 >gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] Length = 939 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR +A N L+ AD + IE R++A I+G+ I AF G DI+ T AK + + Sbjct: 699 VRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHMIDAFRQGLDIHAATAAKVYGVELA 758 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ + R K + + Y Sbjct: 759 DVTADMRRNAKSVNFGIIY 777 >gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I) [Deinococcus deserti VCD115] Length = 923 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 37/78 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 686 IRKGFIADKGYCLISADYSQIELRLLAHIADDPLMQQAFREGADIHRRTAAQVLGLEEQS 745 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + + Y Sbjct: 746 VTSTQRRAAKTVNFGVLY 763 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G + AD + IE R+LA ++ E ++A+ EDI+ T F D Sbjct: 723 IRKAFLPKSGWLMAAADYSQIELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVFEK--DD 780 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ ++R I K + + Y G+ F Sbjct: 781 INSDERRIAKTINFGVIYGMGSLKF 805 >gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] Length = 936 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 25/125 (20%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P I PLG + ++ I +++ + L Sbjct: 671 TGRLSSSNPNLQNIP---------------------IRTPLG--REIRKAFIPSTSDRYL 707 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R+ A I+ + I AF N EDI+ T F+T D ++K+ R K + Sbjct: 708 LSADYSQIELRIAAEISQDSHLIDAFRNREDIHTATAKTIFDT--DDITKDMRRKAKEVN 765 Query: 437 LALGY 441 + Y Sbjct: 766 FGVLY 770 >gi|315585859|gb|ADU40240.1| DNA-directed DNA polymerase I [Helicobacter pylori 35A] Length = 893 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 108/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLSEILYEKLELPKNKSH 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E +L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKSLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R I+S+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFISSS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + + AF G DI++ T F + ++KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMDAFLKGRDIHLETSKALFG---EDLAKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803] gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803] Length = 986 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 71/312 (22%), Positives = 123/312 (39%), Gaps = 57/312 (18%) Query: 160 GEYCKRDVEATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLK 208 G+YC D AT L +L P L + E+ L + + DRG RID D + Sbjct: 538 GQYCGLDCYATYLLASKLQKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQT 597 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR------MYLFLITGIDLVDMSEGTLK 262 L + +A E+++ + ++ +++ L LF G+D + Sbjct: 598 LSQQLA-------ENLLTIETAAYEAAGESFNLSSPKQLGTILFDKLGLDRKKSRKTKTG 650 Query: 263 SILSHSNITQLAKD--LILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRT 317 H+ + +L D +I L A LK ++ L E V+ + T + T Sbjct: 651 YSTDHATLEKLQGDHPIIDAILEHRTLAKLKSTYVDALPELVNGQTQRIHTDFNQAVTST 710 Query: 318 GRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 GR S QN+P R + S +I R + L Sbjct: 711 GRLSSSNPNLQNIPIRSDFSRQI-------------------------RRAFLPQKDWLL 745 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD + IE R+LA ++ E ++A+ + +D++ T F + ++ +R +GK + Sbjct: 746 VSADYSQIELRILAHLSQEPVLLQAYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTIN 803 Query: 437 LALGYQGGAKVF 448 + Y GA+ F Sbjct: 804 FGVIYGMGAQRF 815 >gi|330802475|ref|XP_003289242.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum] gi|325080687|gb|EGC34232.1| hypothetical protein DICPUDRAFT_153597 [Dictyostelium purpureum] Length = 1200 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I+ +G ++ D IE RV++ + + I F N +D+ +K N I+ Sbjct: 914 IRDAFISRDGYTMLAYDYNQIELRVMSHFSNDKHLINYFNNNQDVIRRMASKLLNKEIND 973 Query: 424 VS-----KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 V+ K +R + +M +G Q K+ K S L + F + S+F Sbjct: 974 VTTDEREKTKRVVYGIM-YGIGPQSLGKLLKISTSAAELLINNFYKEFPQISSF 1026 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I SN G L+ AD + IE R+ A ++G+ I+AF N EDI+ T F+T Sbjct: 708 IRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIEAFRNHEDIHAATARVIFDT--K 765 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF 448 +++ + R K E+ G G + F Sbjct: 766 EITPDMRR--KAKEVNFGVLYGIQPF 789 >gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] Length = 994 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 74/181 (40%), Gaps = 47/181 (25%) Query: 278 ILNRLASSGSAILKL---------------NTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 +L LAS G+ + L + L A++ + GR+ + GA +TGR S Sbjct: 677 VLETLASQGAEVATLVLEWRQLSKLKSTYTDALQAAINPATGRVHTSYSLVGA-QTGRLS 735 Query: 322 GCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 QN+P R E +I R +A G L+ AD Sbjct: 736 SNDPNLQNIPVRTEIGRQI-------------------------RDAFVAEPGHVLLSAD 770 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+ A IA +AFA+GEDI+ T + F +V+++ R K + A+ Sbjct: 771 YSQIELRLAAHIADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAIL 826 Query: 441 Y 441 Y Sbjct: 827 Y 827 >gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] Length = 924 Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 5/86 (5%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S + L+ AD + IE R+ A ++G++ I AF NGEDI+ T F T + Sbjct: 682 IRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGEDIHTATAQVIFGT--E 739 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVF 448 ++S + R K E+ G G + F Sbjct: 740 EISSDMRR--KAKEVNFGVLYGIQPF 763 >gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] Length = 878 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 58/252 (23%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +KSI+ + +T+L I L +A SDG++ T+ ++TGR Sbjct: 574 IKSIMEYRTLTKLYSTYI--------------EGLKKACYSDGKVH-TIFNQALTQTGRL 618 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + L G I ++ + + G ++ AD Sbjct: 619 SSIEPNLQNIPIR-------------LEEGRLIR----------KAFVPSEEGWVILGAD 655 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA I+ + I+AF GEDI+ T F ++++ + R K + + Sbjct: 656 YSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGII 715 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ---DQYPEFAVKD- 496 Y G+ S+N+ T ++ ++ H+L +QY E VKD Sbjct: 716 Y--------------GMSAFGLSENLNITQ--KEAKKYIDHYLETYSGINQYMEDTVKDA 759 Query: 497 KLIGTACELVKK 508 K G A L + Sbjct: 760 KFHGYATTLFNR 771 >gi|158079357|ref|YP_001504170.1| putative DNA polymerase [Enterococcus phage phiEF24C] gi|157890201|dbj|BAF81329.1| putative DNA polymerase [Enterococcus phage phiEF24C] Length = 1023 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G ++ D + +E R+L IA + +AF NGED++ T + + P D V K+ R Sbjct: 723 GGGMLQLDYSALEMRILGLIAKDKAMTQAFINGEDMHEATASLVWKLPKDNVPKDMRQRA 782 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQ 461 K + + Y G F ++A G+ +++ Sbjct: 783 KSVNFGIAY--GESPF-SIAPKLGVTVEE 808 >gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] Length = 873 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 29/170 (17%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ I K + D + IE R+LA + + I+AF N +DI++ T AK F DK Sbjct: 647 IRNAFITD--KLFISLDYSQIELRLLAHFSKDPHLIEAFLNDKDIHLETAAKIFGE--DK 702 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN-VKSTSTFEDW------- 475 +KE R+I K + L Y G K + + ++F + ++ ST +D+ Sbjct: 703 -AKEYRSIAKSINFGLIYGMGPKKLSETINVSTKEAKEFIEKYFENFSTVKDFIEKTKVE 761 Query: 476 --EQAESHHLWMQDQYPEF--------------AVKDKLIGTACELVKKA 509 E+ L+ + ++ +F AV G+A +++KKA Sbjct: 762 TKEKGYVETLFKRRRFFDFNSANARTLAAYEREAVNTIFQGSAADIIKKA 811 >gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] Length = 945 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G L+ AD + IE R+ A +A +AFA GEDI+ T + F T Sbjct: 705 IRDAFVAEPGNVLLAADYSQIELRLAAHMADVPALKEAFAAGEDIHARTAMEMFGT---- 760 Query: 424 VSKEQRAIGKVMELALGY 441 V ++ R K + A+ Y Sbjct: 761 VDRDTRGRAKTINFAILY 778 >gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 26/129 (20%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P RSEE +R+ + S+ Sbjct: 627 TQTGRLSSVDPNLQNIPM--RSEE----------------------GRLIRTAFVPSHPN 662 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRAIG 432 ++ AD + IE RVLA + G+ KAF NGEDI+ T F D V +R Sbjct: 663 WQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTA 722 Query: 433 KVMELALGY 441 K + + Y Sbjct: 723 KAVNFGIVY 731 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 61/145 (42%), Gaps = 28/145 (19%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 +GR+ + G + TGR S QN+P +T Q L Sbjct: 633 EGRIHTSFVQTGTA-TGRLSSKNPNLQNIP---------ARTSQGLK------------- 669 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R +A GKKL+ D + IE R+LA + + + AF +DI++ T F Sbjct: 670 --IREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKDIHLQTAIALFG--- 724 Query: 422 DKVSKEQRAIGKVMELALGYQGGAK 446 ++ + +RA+ K + L Y G K Sbjct: 725 EEEAPSKRAVAKTVNFGLLYGMGQK 749 >gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 878 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 59/252 (23%), Positives = 101/252 (40%), Gaps = 58/252 (23%) Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 +KSI+ + +T+L I L +A SDG++ T+ ++TGR Sbjct: 574 IKSIMEYRTLTKLYSTYI--------------EGLKKACYSDGKVH-TIFNQALTQTGRL 618 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + L G I ++ + + G ++ AD Sbjct: 619 SSIEPNLQNIPIR-------------LEEGRLIR----------KAFVPSEEGWVILGAD 655 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA I+ + I+AF GEDI+ T F ++++ + R K + + Sbjct: 656 YSQIELRILAHISNTESLIEAFKEGEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGII 715 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ---DQYPEFAVKD- 496 Y G+ S+N+ T ++ ++ H+L +QY E VKD Sbjct: 716 Y--------------GMSAFGLSENLNITQ--KEAKKYIDHYLKTYSGINQYMEDTVKDA 759 Query: 497 KLIGTACELVKK 508 K G A L + Sbjct: 760 KFHGYATTLFNR 771 >gi|295837297|ref|ZP_06824230.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295826463|gb|EFG64876.1| DNA polymerase I [Streptomyces sp. SPB74] Length = 565 Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR ++A G +LVVAD A +E R+LA +AG+ + A +D+Y +AF D Sbjct: 328 VVRRAVVADPGWRLVVADAAQMEPRILAAVAGDAGLLDVAAKADDLYAAVSDRAFAGDRD 387 Query: 423 KV 424 + Sbjct: 388 RA 389 >gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 26/129 (20%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P RSEE +R+ + S+ Sbjct: 627 TQTGRLSSVDPNLQNIPM--RSEE----------------------GRLIRTAFVPSHPN 662 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE-QRAIG 432 ++ AD + IE RVLA + G+ KAF NGEDI+ T F D V +R Sbjct: 663 WQIFGADYSQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTA 722 Query: 433 KVMELALGY 441 K + + Y Sbjct: 723 KAVNFGIVY 731 >gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7] gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7] Length = 870 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 61/238 (25%), Positives = 97/238 (40%), Gaps = 49/238 (20%) Query: 278 ILNRLASSGSAI---LKLNTLSEAVSS-----------DGRLRGTLQFYGASRTGRWSGC 323 ILN+L I LK TLS+ S+ DG++ T+ ++TGR S Sbjct: 557 ILNKLKDIHPIIDKVLKYRTLSKLYSTYIIGLQDQVFIDGKIH-TIYNQALTQTGRLSST 615 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + P G +R + LV D + Sbjct: 616 DPNLQNIP---------------------VKTPEG---KLIRKAFVPEYDY-LVSFDYSQ 650 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA +AG IKAF +DI+ T ++ F P ++V R K + + Y Sbjct: 651 IELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFGIIY-- 708 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 G F +A G+ + + + +K FE++ + + L+M D +F K+ + T Sbjct: 709 GMSDF-GLAEQVGVSVGEAREFIK--RYFENYPEIK---LYM-DSNIDFCKKNGYVTT 759 >gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] Length = 881 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 25/117 (21%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P + L +G I + V S +++S Sbjct: 615 TQTGRLSSVDPNLQNIPVR-------------LEQGRLIRK--AFVPEEVNSVLLSS--- 656 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 D + IE RVLA I+G++ I AF +G DI+ +T + FN P D ++R Sbjct: 657 -----DYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRR 708 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 32/151 (21%) Query: 293 NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 + L ++ D GR+ + GA +TGR S QN+P R E +I Sbjct: 641 DALQAQINKDSGRVHTSYSLTGA-QTGRLSSTDPNLQNIPIRTEVGRQI----------- 688 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R +A G ++ AD + IE R+ A +A +AFA GEDI+ Sbjct: 689 --------------RHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAFAAGEDIHA 734 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F +V++E R K + A+ Y Sbjct: 735 ATAEQLFG----EVNRETRGRAKTINFAILY 761 >gi|32442291|gb|AAP82216.1| DNA polymerase [Podovirus SOG] Length = 401 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 41/199 (20%) Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 F TG +VD EGTLK I +H + + D +L + I ++ + +A+ DGR+ Sbjct: 193 FTPTGQPIVD--EGTLKKI-THIHEAKPIADFLLYQ-----KRIAQIQSWLDALEEDGRV 244 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 G++ + TGR S N P + + + P G+ +C R Sbjct: 245 HGSV-IPNGTITGRMS------HNHPN--------------VAQVPAVYSPFGV--EC-R 280 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +C G LV D +G+E R+LA ++ I NG DI+ T A Sbjct: 281 ACWTVEEGNVLVGVDASGLELRMLAHYMNDEEYINEVVNG-DIHTTNQKLA--------G 331 Query: 426 KEQRAIGKVMELALGYQGG 444 E R K AL Y G Sbjct: 332 LESRDTAKTFIYALVYGAG 350 >gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] Length = 950 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IAS + L+ AD + IE R+ A ++G+ I+AF N EDI+ T F+T + Sbjct: 708 IRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIEAFRNQEDIHAATAKAIFDT--E 765 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ + R K + + Y Sbjct: 766 DVTSDMRRKAKEVNFGVLY 784 >gi|284794813|gb|ADB93739.1| gp46 [Mycobacterium phage RedRock] Length = 595 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 12/106 (11%) Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 A L + VR C +A G + D E RVLA ++ + I+AF G D++ T Sbjct: 365 AQTLPASDSTVRRCFLAEEGDVMASIDYQTQELRVLAALSNDQTMIEAFKTGADLHQMTA 424 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 A T R +GK+ Y GGA KT+A +D Sbjct: 425 DAAQVT---------RKVGKMANFLTVYGGGA---KTLAEQAKVDF 458 >gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354] Length = 955 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G L+ AD + IE R+ A +A +AFA GEDI+ T + F + Sbjct: 710 IRQAFVADEGNVLLAADYSQIELRLAAHMADVAPLREAFAAGEDIHARTAQEMFGS---- 765 Query: 424 VSKEQRAIGKVMELALGY 441 V ++ RA K + A+ Y Sbjct: 766 VDRDTRARAKTINFAILY 783 >gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 40/178 (22%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P RS+E +R+ + S Sbjct: 627 TQTGRLSSVDPNLQNIPM--RSDE----------------------GRQIRTAFVPSQPD 662 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF----NTPIDKVSKEQR 429 ++ AD + IE RVLA + G+ +AF NGEDI+ T F P++ V QR Sbjct: 663 WQIFGADYSQIELRVLAHMTGDKNMQQAFLNGEDIHAETARAVFGLDSQAPVNAV---QR 719 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 K + + Y G F +A++ G+ Q Q + + F+++ + H WM++ Sbjct: 720 RTAKAVNFGIVY--GISDFG-LANNLGISRAQAKQFID--TYFKEFPKV---HEWMEN 769 >gi|163841491|ref|YP_001625896.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954967|gb|ABY24482.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 411 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 VR + A++G KL+VAD A +E RVLA +A +D K+ A D+Y A+ F Sbjct: 331 VRGAVHANHGYKLIVADAAQLEPRVLAALA-QDAKMAEAAQDHDLYAGIAAQGFG 384 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 32/151 (21%) Query: 293 NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 + L E V ++ GR+ + GA +TGR S QN+P R E +I Sbjct: 650 DALQEQVNATTGRVHTSYSLVGA-QTGRLSSTDPNLQNIPIRTEVGRQI----------- 697 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 R IA+ G L+ AD + IE R+ A +A +AFA G+DI+ Sbjct: 698 --------------RDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHA 743 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 T + F +V+++ R K + ++ Y Sbjct: 744 ATAIELFG----EVNRDTRGKAKTVNFSILY 770 >gi|327197776|ref|YP_004301474.1| gp141 [Brochothrix phage A9] gi|299810376|gb|ADJ53175.1| gp141 [Brochothrix phage A9] Length = 334 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-GEDIYVTTYAKAFNTPIDKVSKEQ 428 A N LV D + EAR+ +AG++ I AF + D++ T + F P+++V+K+ Sbjct: 31 ARNHDTLVFTDYSAQEARLAGVLAGDEQMINAFLDPSRDVHTETASLVFKVPVEEVTKDL 90 Query: 429 RAIGKVMELALGY 441 R K + L Y Sbjct: 91 RTRAKAVTFGLMY 103 >gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] Length = 905 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 32/176 (18%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422 +R +A L+ D + IE RVLA ++G++ +A+ N D++ T K F + + Sbjct: 665 IRQGFVAEKNSVLMGIDYSQIELRVLAQLSGDENLREAYQNSMDLHSLTARKIFELSDEE 724 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL------------------------D 458 +VS+E+R I K + ++ Y G F +A G+ + Sbjct: 725 EVSREERIIAKTINFSIIY--GKTAF-GLAKELGISQKEASEYIDRYFNQYPKVKGFEKE 781 Query: 459 LQQFSQNVKSTSTFEDWEQ----AESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + +F++ T TF + S + ++ Q AV + GTA E++KK Sbjct: 782 IVEFTEKHGYTETFFGRRRLIDGINSKNKNIKSQAERMAVNSVIQGTAAEIIKKVM 837 >gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] Length = 931 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 3/79 (3%) Query: 364 VRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S+ L+ AD + IE R+ A ++G+ + AF N EDI+ TT F T D Sbjct: 689 IRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTMLGAFQNREDIHSTTAKLIFET--D 746 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+K+ R K + + Y Sbjct: 747 EVTKDMRRKAKEVNFGVLY 765 >gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99] gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99] Length = 897 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 36/188 (19%) Query: 261 LKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 LK + H +I + + LN+L ++ + +L+L D ++ T G + TGR Sbjct: 587 LKILDKHPSIPLILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQTGTA-TGR 639 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P + P GL +R IAS+ + L+ Sbjct: 640 LSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKEYCLLG 675 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I K + Sbjct: 676 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSINFG 732 Query: 439 LGYQGGAK 446 L Y G+K Sbjct: 733 LVYGMGSK 740 >gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805] gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805] Length = 988 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + L+ AD + IE R+L ++GE+ +A+ +G+D++ T + D+ Sbjct: 733 IRKAFLPQEHWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLDK--DE 790 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ ++R +GK + + Y GA+ F Sbjct: 791 ITADERRLGKTINFGVIYGMGAQRF 815 >gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87] gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87] Length = 887 Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 26/148 (17%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 603 LQKVISKDQRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKI- 647 Query: 355 DPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R ++ +++ AD + IE RVLA I ++ +AF NG DI+ T Sbjct: 648 ----------RKAFKPTDKDSVILSADYSQIELRVLAHITQDESLKEAFINGNDIHTATA 697 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN ++V R K + + Y Sbjct: 698 MKVFNVEANEVDSLMRRQAKAVNFGIVY 725 >gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi] gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi] Length = 858 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + +R IA G K++ AD + IE R+LA +A +AFAN +DI+ T + F + Sbjct: 606 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANEQDIHDITARQVFG--V 663 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++ ++ R K + + Y Sbjct: 664 QEIDEQLRRKAKSINFGIIY 683 >gi|170782359|ref|YP_001710692.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] gi|169156928|emb|CAQ02096.1| DNA polymerase I [Clavibacter michiganensis subsp. sepedonicus] Length = 894 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +RS I G + L+ AD + IE R++A ++G+ I+AF GED++ + F Sbjct: 653 IRSAIRVGEGYETLLTADYSQIEMRIMAHLSGDAGLIEAFEVGEDLHRFVGSSIFGVEPA 712 Query: 423 KVSKEQRAIGKVMELALGY 441 VS R K M L Y Sbjct: 713 DVSPAMRTKVKAMSYGLAY 731 >gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] Length = 887 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 ++ + A G ++ +D + IE RVLA I G+ +AF NGEDI+ TT K F Sbjct: 648 QAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDIHATTAVKIF 700 >gi|212695718|ref|ZP_03303846.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] gi|212677391|gb|EEB36998.1| hypothetical protein ANHYDRO_00238 [Anaerococcus hydrogenalis DSM 7454] Length = 681 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 25/111 (22%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L +L E + DGR+R T + + TGR S QNLP R+EE G Sbjct: 594 LESLEECIDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLPI--RTEE-----------GR 639 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 I R A K L+ AD + IE RVLA +A + ++F Sbjct: 640 KI-----------RKAFKADKDKVLIDADYSQIELRVLAHLANDKKNARSF 679 >gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] Length = 817 Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%) Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 + +R IA G K++ AD + IE R+LA +A +AFAN +DI+ T + F + Sbjct: 565 NLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAFKEAFANEQDIHDITARQVFG--V 622 Query: 422 DKVSKEQRAIGKVMELALGY 441 ++ ++ R K + + Y Sbjct: 623 QEIDEQLRRKAKSINFGIIY 642 >gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803] gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803] Length = 891 Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust. Identities = 67/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D D + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTDRLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSCKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F N DI+ T F D+V+ R K + + Y Sbjct: 690 FQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] Length = 891 Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLCNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|325996723|gb|ADZ52128.1| DNA polymerase I [Helicobacter pylori 2018] Length = 889 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 353 IADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + P GL +R IAS+ + L+ D + IE R+LA + + ++AF G DI++ Sbjct: 644 VRSPKGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLE 700 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 T F + ++KE+R+I K + L Y G+K Sbjct: 701 TSKALFG---EDLAKEKRSIAKSINFGLVYGMGSK 732 >gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171] gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171] Length = 877 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 414 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 471 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 472 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 524 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 525 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 579 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 580 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 631 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 674 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 675 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|229190556|ref|ZP_04317553.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876] gi|228592901|gb|EEK50723.1| DNA-directed DNA polymerase [Bacillus cereus ATCC 10876] Length = 808 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 39/80 (48%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ + GK L D +G E R++AW +G++ I+ F G D++ T + + Sbjct: 543 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAE 602 Query: 424 VSKEQRAIGKVMELALGYQG 443 + K++R K + Y G Sbjct: 603 IVKKERTDAKAGNFGISYGG 622 >gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] Length = 880 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 42/150 (28%), Positives = 59/150 (39%), Gaps = 27/150 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + E+V D R+ T+ + TGR S QN+P R+EE Sbjct: 599 IKESVFEDNRVH-TIYNQALTLTGRLSSLEPNLQNIPI--RTEE---------------- 639 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I V AD + IE RVLA +A +AF +DI+ T Sbjct: 640 ------GRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAFEEDQDIHTVTAQ 693 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 K F+ +D V EQR K + + Y G Sbjct: 694 KVFH--VDTVDSEQRRRAKAVNFGIIYGIG 721 >gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B'] Length = 865 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 11/120 (9%) Query: 330 LPRQERSEEILTQTIQALNRGETIADP--------LGLASDCVRSCIIASNGKKLVVADL 381 L + + QT+ A R + A+P L L + R+ I +++ + AD Sbjct: 589 LDKNNKLHSTFNQTVTATGRISS-AEPNLQNIPIRLALGKEIRRAFIPSNDDYVFLDADY 647 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++ + +AF G DI+ +T ++ F +D V++ QR K + + Y Sbjct: 648 SQIELRVLASLSADANMQRAFLEGIDIHTSTASEVFG--VDTVTQAQRNAAKAVNFGVVY 705 >gi|307638123|gb|ADN80573.1| DNA polymerase I [Helicobacter pylori 908] Length = 889 Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 353 IADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + P GL +R IAS+ + L+ D + IE R+LA + + ++AF G DI++ Sbjct: 644 VRSPKGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLE 700 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 T F + ++KE+R+I K + L Y G+K Sbjct: 701 TSKALFG---EDLAKEKRSIAKSINFGLVYGMGSK 732 >gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1] gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1] Length = 922 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 26/130 (20%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P + ER +I R+ + G Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKI-------------------------RAAFKPTKGNI 693 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE +LA ++ ++ I+AF + +DI++ T +K F ++ R I K + Sbjct: 694 FISADYSQIELVILAHLSEDESLIEAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSI 753 Query: 436 ELALGYQGGA 445 + Y+ A Sbjct: 754 NFGIIYRMSA 763 >gi|325998317|gb|ADZ50525.1| DNA polymerase I [Helicobacter pylori 2017] Length = 889 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%) Query: 353 IADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + P GL +R IAS+ + L+ D + IE R+LA + + ++AF G DI++ Sbjct: 644 VRSPKGL---LIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLE 700 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 T F + ++KE+R+I K + L Y G+K Sbjct: 701 TSKALFG---EDLAKEKRSIAKSINFGLVYGMGSK 732 >gi|228968815|ref|ZP_04129777.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto str. T04001] gi|228790878|gb|EEM38517.1| DNA-directed DNA polymerase [Bacillus thuringiensis serovar sotto str. T04001] Length = 607 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 39/80 (48%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ + GK L D +G E R++AW +G++ I+ F G D++ T + + Sbjct: 342 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAE 401 Query: 424 VSKEQRAIGKVMELALGYQG 443 + K++R K + Y G Sbjct: 402 IVKKERTDAKAGNFGISYGG 421 >gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134] gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134] Length = 877 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 414 VAKMKETHAVKSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 471 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 472 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 524 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 525 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 579 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 580 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 631 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 674 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 675 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|254779982|ref|YP_003058089.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] gi|254001895|emb|CAX30145.1| DNA polymerase I (DNA nucleotidyltransferase (DNA-directed)) [Helicobacter pylori B38] Length = 889 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQ-TYALRMYLFLITGIDL 253 +G++ID +L++ E L+ I+ L D + S +Q + L L L Sbjct: 512 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLSEVLYEKLELPKNKSH 571 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L ++ + +L+L D ++ T Sbjct: 572 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 625 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 626 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 660 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F ++KE+R+I Sbjct: 661 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---GDLAKEKRSI 717 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 718 AKSINFGLVYGMGSK 732 >gi|208435338|ref|YP_002267004.1| DNA polymerase I [Helicobacter pylori G27] gi|208433267|gb|ACI28138.1| DNA polymerase I [Helicobacter pylori G27] Length = 905 Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQ-TYALRMYLFLITGIDL 253 +G++ID L++ E L+ I+ L D + S +Q + L L L Sbjct: 528 QGFKIDAPYFKHLEQEFKNELHVLEHQILDLIGVDFNLNSPKQLSEVLYEKLGLPKNKSH 587 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L ++ + +L+L D ++ T Sbjct: 588 STDEKNLLKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 641 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 642 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 676 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F ++KE+R+I Sbjct: 677 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGG---DLAKEKRSI 733 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 734 AKSINFGLVYGMGSK 748 >gi|257055385|ref|YP_003133217.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Saccharomonospora viridis DSM 43017] gi|256585257|gb|ACU96390.1| DNA polymerase I family protein with 3'-5'-exonuclease and polymerase domains [Saccharomonospora viridis DSM 43017] Length = 559 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 6/81 (7%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPID 422 +R C+ A G LVVAD A +E RVLA ++G D ++ + D+Y + F TPI+ Sbjct: 321 LRGCVRADPGWTLVVADAAQLEPRVLAALSG-DRRLAEVSADADLYTSLTHTLFGRTPIE 379 Query: 423 KVSKEQRAIGKVMELALGYQG 443 + RA K+ L+ Y G Sbjct: 380 ----DDRARAKIAMLSAMYGG 396 >gi|194432078|ref|ZP_03064367.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012] gi|194419607|gb|EDX35687.1| DNA-directed DNA polymerase [Shigella dysenteriae 1012] Length = 72 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL-R 62 L+ D+ET P+ G AYAE + L A+A +DEPV +WD T +P L + + Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 64 Query: 63 DETVMCVA 70 ET+M ++ Sbjct: 65 PETLMPIS 72 >gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144] Length = 876 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 56/147 (38%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISKDHRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S + +I S AD + IE RVLA I ++ AF N DI+ T Sbjct: 638 KAFKPTS---KDSVILS-------ADYSQIELRVLAHITQDESLKHAFINRHDIHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN D+V R K + + Y Sbjct: 688 KVFNVESDQVDSLMRRQAKAVNFGIVY 714 >gi|229020744|ref|ZP_04177467.1| DNA-directed DNA polymerase [Bacillus cereus AH1273] gi|229026983|ref|ZP_04183301.1| DNA-directed DNA polymerase [Bacillus cereus AH1272] gi|228734300|gb|EEL84976.1| DNA-directed DNA polymerase [Bacillus cereus AH1272] gi|228740545|gb|EEL90820.1| DNA-directed DNA polymerase [Bacillus cereus AH1273] Length = 808 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/80 (26%), Positives = 39/80 (48%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ + GK L D +G E R++AW +G++ I+ F G D++ T + + Sbjct: 543 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMIELFNTGGDMHRRTASVMTGKSEAE 602 Query: 424 VSKEQRAIGKVMELALGYQG 443 + K++R K + Y G Sbjct: 603 IVKKERTDAKAGNFGISYGG 622 >gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly] gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly] Length = 922 Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 26/130 (20%) Query: 317 TGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P + ER +I R+ + G Sbjct: 659 TGRISSTAPNLQNIPIKNERGRKI-------------------------RAAFKPTKGNI 693 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE +LA ++ ++ I+AF + +DI++ T +K F ++ R I K + Sbjct: 694 FISADYSQIELVILAHLSEDESLIEAFTHKKDIHIQTASKLFKVDEANITPSMRRIAKSI 753 Query: 436 ELALGYQGGA 445 + Y+ A Sbjct: 754 NFGIIYRMSA 763 >gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198] gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198] Length = 904 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%) Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 A +R IA GKKL+ D + IE R+LA + + + AF DI++ T F Sbjct: 668 AGKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLDAFRKDLDIHLRTAQMVFGE 727 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAK 446 +K +R I K + L Y G + Sbjct: 728 D----AKNKRHIAKTINFGLIYGMGTR 750 >gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579] Length = 891 Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264] gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264] Length = 877 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 414 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 471 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 472 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 524 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 525 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 579 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 580 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 631 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 674 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 675 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] Length = 875 Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 LA D +R+ +G L+ D + IE R+LA + + I+AF NG+DI+ T F Sbjct: 639 NLAKD-MRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALIEAFKNGDDIHARTAISIF 697 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA 445 + + + RAI K + L Y G+ Sbjct: 698 G----ESNTQNRAIAKSINFGLIYGMGS 721 >gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] Length = 891 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] Length = 886 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 28/138 (20%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + +DGR+ T ++TGR S QN+P + L +G Sbjct: 601 LQDYIMADGRIH-TRYLQDLTQTGRLSSVDPNLQNIPIR-------------LEQGR--- 643 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R S+ L+ +D + IE RVLA I+G++ I AF G DI+ +T Sbjct: 644 --------LIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 695 Query: 414 AKAFNT--PIDKVSKEQR 429 + F P D + ++R Sbjct: 696 MRVFGIEKPEDVTANDRR 713 >gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] Length = 886 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 28/138 (20%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + +DGR+ T ++TGR S QN+P + L +G Sbjct: 601 LQDYIMADGRIH-TRYLQDLTQTGRLSSVDPNLQNIPIR-------------LEQGR--- 643 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R S+ L+ +D + IE RVLA I+G++ I AF G DI+ +T Sbjct: 644 --------LIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 695 Query: 414 AKAFNT--PIDKVSKEQR 429 + F P D + ++R Sbjct: 696 MRVFGIEKPEDVTANDRR 713 >gi|317013238|gb|ADU83846.1| DNA polymerase I (polA) [Helicobacter pylori Lithuania75] Length = 893 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 107/255 (41%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV 254 +G++ID +L++ E L+ I++L D + S +Q + + Sbjct: 516 QGFKIDAPYFKRLEQEFKNELHVLERQILELIGVDFNLNSPKQLGEILYEKLKLPKNKSH 575 Query: 255 DMSEGTLKSIL-SHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 E L IL H +I + + LN+L ++ + +L+L D ++ T Sbjct: 576 STDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 629 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 630 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 664 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F + +KE+R+I Sbjct: 665 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDL---AKEKRSI 721 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 722 AKSINFGLVYGMGSK 736 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 +LV AD + IE R+LA + + + AF +GEDI+ A+ ++ V+ + R I K Sbjct: 727 RLVCADYSQIELRMLAHFSQDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKA 786 Query: 435 MELALGY 441 + + Y Sbjct: 787 VNFGVMY 793 >gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185] gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185] Length = 891 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVY 729 >gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15] gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15] Length = 891 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|207092962|ref|ZP_03240749.1| DNA polymerase I (polA) [Helicobacter pylori HPKX_438_AG0C1] Length = 474 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 36/188 (19%) Query: 261 LKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 LK + H +I + + LN+L ++ + +L+L D ++ T G + TGR Sbjct: 164 LKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQTGTA-TGR 216 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P + P GL +R IAS+ + L+ Sbjct: 217 LSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKEYCLLG 252 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F + +KE+R+I K + Sbjct: 253 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGGDL---AKEKRSIAKSINFG 309 Query: 439 LGYQGGAK 446 L Y G+K Sbjct: 310 LVYGMGSK 317 >gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 891 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVY 729 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 LA D VR C A G V D + IE R+LA + + ++AF N EDI+ T F Sbjct: 643 LAKD-VRECFEAREGYSFVGLDYSQIELRLLAHFSRDPALLEAFKNDEDIHARTAISIFG 701 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGA 445 + + RA+ K + L Y G+ Sbjct: 702 SS----DGQNRAVAKSINFGLIYGMGS 724 >gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 607 LQKVISKDNRIHTRFN-QTLAQTGRLSSVDPNLQNIPIR-------------LEEGRKIR 652 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S+ S I++ AD + IE RVLA I ++ +AF +G DI+ T Sbjct: 653 KAFKPTSE--DSVILS--------ADYSQIELRVLAHITQDESLKEAFIHGHDIHTATAM 702 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K FN + V R K + + Y Sbjct: 703 KVFNVEANDVDSLMRRQAKAVNFGIVY 729 >gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] Length = 885 Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust. Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 30/183 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + S+ R+ T G + TGR S QN+P +T + + Sbjct: 601 LPKLADSENRIHTTFHQNGTA-TGRLSSSNPNIQNIP---------VKTDEGIK------ 644 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R ++ G + D + IE RVLA ++ ++ I A+ +D++ T Sbjct: 645 ---------IRRGFVSEEGWSFISFDYSQIELRVLAELSEDETLILAYQKDKDLHDLTAR 695 Query: 415 KAF-NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 K F T + VS+E+R+I KV+ ++ Y G +K K L + ++ + Sbjct: 696 KLFFKTDEEPVSREERSIAKVINFSILYGKTPFGLSKELKIPMGDAKLYINKYFEEYPRV 755 Query: 470 STF 472 TF Sbjct: 756 RTF 758 >gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 899 Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 28/138 (20%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + +DGR+ T ++TGR S QN+P + L +G Sbjct: 614 LQDYIMADGRIH-TRYLQDLTQTGRLSSVDPNLQNIPIR-------------LEQGR--- 656 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R S+ L+ +D + IE RVLA I+G++ I AF G DI+ +T Sbjct: 657 --------LIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTA 708 Query: 414 AKAFNT--PIDKVSKEQR 429 + F P D + ++R Sbjct: 709 MRVFGIEKPEDVTANDRR 726 >gi|229915743|ref|YP_002884389.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] gi|229467172|gb|ACQ68944.1| DNA-directed DNA polymerase [Exiguobacterium sp. AT1b] Length = 853 Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 4/91 (4%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +RS GK L D +G E R++AW + ++ I+ F D++ T + P Sbjct: 576 IRSFFAPKPGKILFFIDFSGFELRLIAWKSNDEVMIELFNTNGDMHRRTASALTGKPESD 635 Query: 424 VSKEQRAIGKVMELALGYQGGA----KVFKT 450 ++K +R K + Y G K FKT Sbjct: 636 ITKIERTNAKAGNFGIAYGGTEYALQKTFKT 666 >gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20] gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains [Leuconostoc citreum KM20] Length = 893 Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 27/116 (23%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P R+EE G I R+ + + Sbjct: 627 TQTGRLSSVDPNLQNIPM--RTEE-----------GRQIR----------RAFVPSQPNW 663 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF----NTPIDKVSK 426 ++ AD + IE RVLA I G+ +AF NGEDI+ T F N P+D + + Sbjct: 664 QIFGADYSQIELRVLAHITGDQNMQRAFLNGEDIHAETARAVFGLDNNAPVDPLMR 719 >gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550] gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550] Length = 891 Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W] gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W] Length = 891 Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPKLEVVAEHVARKVHVLYDVKQTFVEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|195952917|ref|YP_002121207.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] gi|195932529|gb|ACG57229.1| DNA-directed DNA polymerase [Hydrogenobaculum sp. Y04AAS1] Length = 585 Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 74/193 (38%), Gaps = 43/193 (22%) Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS------DGRLRGTLQFYGASRTGRWSGCVFQP 327 AKD+I SS KL+ L E +S + R+ GA TGR S Sbjct: 284 AKDVI-----SSVLEFRKLHKLQEKLSEILEYNENNRIHPEFWQIGAV-TGRMSSSRPNV 337 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+PR+ +RS + A +G V+AD + IE R Sbjct: 338 QNIPRE------------------------------LRSILKAKDGYVFVIADFSQIELR 367 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV 447 + A ++ I GED++ T + ++ ++KE+R K L Y K Sbjct: 368 IAAEYVKDEVMIDIINKGEDLHKFTASLITGKSLEDITKEERQRAKAANFGLIYGISEKS 427 Query: 448 FKTMASHC-GLDL 459 A + G+D+ Sbjct: 428 LSLYARNSYGIDM 440 >gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7] Length = 833 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 37/254 (14%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQT-YALRMYLFLITGIDL 253 +G++ID +L++ E K L+ I+ L D + S +Q L L L Sbjct: 456 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDFNLNSPKQLGEVLYEKLNLPKNKSH 515 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I+ + + LN+L+++ + +L+L D ++ T Sbjct: 516 STDEKSLLKIMDKHPSISLILEYRELNKLSNTYTTPLLRLK------DKDDKIHTTFIQT 569 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + ++G I G S C++ Sbjct: 570 GTA-TGRLSSHSPNLQNIPVRS-------------SKGLLIRK--GFISSSKEYCLLG-- 611 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I Sbjct: 612 ------VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIA 662 Query: 433 KVMELALGYQGGAK 446 K + L Y G+K Sbjct: 663 KSINFGLVYGMGSK 676 >gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633] gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633] Length = 883 Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust. Identities = 80/324 (24%), Positives = 125/324 (38%), Gaps = 98/324 (30%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTP 420 VRS + S+ + KL+ +D + IE RVLA +A + I+AF N DI+ T + F P Sbjct: 642 VRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMRVFGIQNP 701 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 ++V+ R K + + Y G+ SQN+ Sbjct: 702 -EEVTSSMRRQAKAVNFGIVY--------------GISDYGLSQNLNIPRK--------- 737 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 A E + + + + QGV KD E +V E A Sbjct: 738 --------------------KAKEFIDR-YLEEFQGV----KDYME---TIVAE-----A 764 Query: 541 RRVANVPRLVMRR------HKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593 R+ V L RR H + +I + R + S ++G + L A +L RE Sbjct: 765 RQNDYVETLFHRRRYLPEIHSSNFNIRSFAERTAMNSPIQGTAADILKVAMIELDRE--- 821 Query: 594 GGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653 LTE QA ++L VHDE++ E P+ S+ +L + + Sbjct: 822 ---LTERNFQA------------------KLLLQVHDELIFEVPEEEVESLQSLVEEVME 860 Query: 654 NPSWAKGLPLKAEG------YEAK 671 N + + +PLKA+ YEAK Sbjct: 861 N-AVSLSVPLKADSNIGNNWYEAK 883 >gi|148361461|gb|ABQ59312.1| DNA polymerase I [Venenivibrio stagnispumantis] Length = 158 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 7/127 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A G ++ AD + IE R++A ++ +KAF +D++ T + ++ Sbjct: 4 LRHLFTAPEGYSIITADYSQIELRLVAEYTKDENMVKAFKENKDLHKLTASIITGKNYEE 63 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTSTFE------DWE 476 ++KE+R + K + L Y K A S+ G+++ N + FE W Sbjct: 64 ITKEERNLAKAINFGLIYGISPKSLMDYASSNYGINITLPEANKFHKNFFEFYKDIKKWH 123 Query: 477 QAESHHL 483 + +HL Sbjct: 124 EETKNHL 130 >gi|111019317|ref|YP_702289.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] gi|110818847|gb|ABG94131.1| probable DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length = 513 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +RS +IA G V+AD +E R+LA ++G D ++ A A +D+Y A+ F+ Sbjct: 289 LRSSVIADPGHTFVIADAGQLEPRILAAMSG-DARMVAAAGADDLYAPVAAETFD 342 >gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] Length = 888 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S+ ++ + D + IE RVLA ++G+ +AF +DI+ T AK F+ Sbjct: 648 IRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGDPHLQEAFKENKDIHTATAAKVFHKDEK 707 Query: 423 KVSKEQRAIGKVMELALGY 441 +SK++R K + + Y Sbjct: 708 DISKDERRQAKAVNFGIVY 726 >gi|461960|sp|P30314|DPOL_BPSP1 RecName: Full=DNA polymerase Length = 924 Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 39/75 (52%) Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 +G +V D + +E R+L + I + +G D++ + AF I++VSK+QR Sbjct: 627 DGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTA 686 Query: 432 GKVMELALGYQGGAK 446 K ++ + YQ A+ Sbjct: 687 SKKIQFGIVYQESAR 701 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G + AD + IE R+LA ++ E ++A+ EDI+ T F + Sbjct: 723 IRKAFLPESGWLMAAADYSQIELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVFEK--ED 780 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 V+ ++R I K + + Y G+ F Sbjct: 781 VNSDERRIAKTINFGVIYGMGSLKF 805 >gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911] gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911] Length = 877 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IAG++ I+AF +D++ T + F+ Sbjct: 637 IRQAFVPSEKGWVIFAADYSQIELRVLAHIAGDEKLIEAFREDQDVHTKTAMEVFHVSEG 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTSNMRRHAKAVNFGIVY 715 >gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] Length = 881 Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN P D ++R Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRR 708 >gi|216114|gb|AAA03732.1| DNA polymerase [Bacillus phage SPO1] Length = 924 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/75 (28%), Positives = 39/75 (52%) Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 +G +V D + +E R+L + I + +G D++ + AF I++VSK+QR Sbjct: 627 DGGVIVQFDYSQLELRILVCYYSRPYTIDLYRSGADLHKAVASDAFGVAIEEVSKDQRTA 686 Query: 432 GKVMELALGYQGGAK 446 K ++ + YQ A+ Sbjct: 687 SKKIQFGIVYQESAR 701 >gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] Length = 881 Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN P D ++R Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPNDRR 708 >gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3] gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3] Length = 890 Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 427 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQ-- 484 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 485 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 537 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 538 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 592 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 593 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 643 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 644 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 687 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 688 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728 >gi|298707037|emb|CBJ29839.1| DNA polymerase I (POL I) [Ectocarpus siliculosus] Length = 482 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 2/79 (2%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA--KAFNTPID 422 R ++AS G V AD + +E R++A ++G+ +K FA+G D++ T A K + Sbjct: 216 RDSLVASPGYAFVSADYSQVEMRLMAHLSGDPDLLKVFADGGDVFRTIAAALKGRGKKAE 275 Query: 423 KVSKEQRAIGKVMELALGY 441 +++E+R K++ + Y Sbjct: 276 DITEEERRQTKIVVYGVLY 294 >gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] Length = 881 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN P D ++R Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPNDRR 708 >gi|322380583|ref|ZP_08054735.1| DNA polymerase I [Helicobacter suis HS5] gi|321146905|gb|EFX41653.1| DNA polymerase I [Helicobacter suis HS5] Length = 856 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IAS G L+ D + IE R+LA + + +KAF EDI++ T F ++ Sbjct: 626 FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQ----AQA 681 Query: 428 QRAIGKVMELALGYQGGAK 446 +R I K + L Y GA+ Sbjct: 682 KRPIAKAINFGLIYGMGAR 700 >gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 928 Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I + + AD + IE R++A ++ + ++AF NG+DI+ + F P+ + Sbjct: 689 IRRVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAE 748 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ + R K+ + Y G VF Sbjct: 749 ITCDMRRKAKITNFGIIY--GISVF 771 >gi|322378735|ref|ZP_08053164.1| DNA polymerase I (PolA) [Helicobacter suis HS1] gi|321148765|gb|EFX43236.1| DNA polymerase I (PolA) [Helicobacter suis HS1] Length = 856 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 4/79 (5%) Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IAS G L+ D + IE R+LA + + +KAF EDI++ T F ++ Sbjct: 626 FIASAGCVLIGVDYSQIELRLLAHFSEDQALLKAFEQKEDIHLNTATALFGNQ----AQA 681 Query: 428 QRAIGKVMELALGYQGGAK 446 +R I K + L Y GA+ Sbjct: 682 KRPIAKAINFGLIYGMGAR 700 >gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18] gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18] Length = 890 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 427 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQ-- 484 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 485 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 537 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 538 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 592 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 593 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 643 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 644 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 687 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 688 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728 >gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] Length = 877 Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 25/119 (21%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DG++ T ++TGR S QN+P + L G I Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R + S L+ +D + IE RVLA I+ ++ I AF +G DI+ +T + F Sbjct: 638 ------RKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVF 690 >gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603] gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603] Length = 838 Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 139/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q+F E +++ + Sbjct: 375 VAKMKETHAVKSDEEVYGKGAKRAVPEQEVVAEHVARKVHVLYDVKQIFEEELEKNEQ-- 432 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G +D + + + E +A K+++++I +L Sbjct: 433 YELFTELELPLARVLADMEV-------KGVTVDTERLRNMGEELAGRLKEMEQEIYELAG 485 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L ++ H I + K L Sbjct: 486 TEFNINSPKQ---LGVILFENLNLPVLKKTKTGYSTSADVLDKLMDHHAI--IPKILHYR 540 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 541 QLGKLNSTYIE--GLLKVVHDDSSKIHTRFNQVLTQTGRLSSTEPNLQNIPIR------- 591 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ I + G + AD + IE RVLA IA ++ ++ Sbjct: 592 ------LEEGRKIR----------QAFIPSEEGWIMYAADYSQIELRVLAHIAKDEGLVE 635 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 636 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 676 >gi|226361457|ref|YP_002779235.1| DNA polymerase [Rhodococcus opacus B4] gi|226239942|dbj|BAH50290.1| putative DNA polymerase [Rhodococcus opacus B4] Length = 513 Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +RS +IA G V+AD +E R+LA ++G D ++ A A +D+Y A+ F+ Sbjct: 289 LRSSVIADPGHTFVIADAGQLEPRILAAMSG-DTRMVAAAGADDLYAPVAAETFD 342 >gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 883 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 31/163 (19%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P RSEE +R I S+ Sbjct: 619 TQTGRLSSVDPNLQNIPV--RSEE----------------------GRLIRQAFIPSHEN 654 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIG 432 ++ +D + IE RVLA I G+ +AF GEDI+ TT + F D V+ E R Sbjct: 655 WQIWSSDYSQIELRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQA 714 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 K + + Y G + +A++ G+ +Q Q ++ FE++ Sbjct: 715 KAVNFGIVY--GISDY-GLANNTGISRKQAHQFIQ--RYFEEY 752 >gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000] Length = 877 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 25/119 (21%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DG++ T ++TGR S QN+P + L G I Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R + S L+ +D + IE RVLA I+ ++ I AF +G DI+ +T + F Sbjct: 638 ------RKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVF 690 >gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363] Length = 877 Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 25/119 (21%) Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DG++ T ++TGR S QN+P + L G I Sbjct: 597 IADDGKIH-TRYVQDLTQTGRLSSVDPNLQNIPVR-------------LEEGRKI----- 637 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 R + S L+ +D + IE RVLA I+ ++ I AF +G DI+ +T + F Sbjct: 638 ------RKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVF 690 >gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] Length = 920 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C I AD + IE R++A ++ ++ ++AF G DI+ T AK ++ ++ Sbjct: 681 IRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMMEAFRKGHDIHRATAAKIWHEDMEN 740 Query: 424 VSKEQRAIGKVMELALGY 441 V+ QR K + Y Sbjct: 741 VTDAQRKKAKQANFGIIY 758 >gi|72388042|ref|XP_844445.1| mitochondrial DNA polymerase I protein A [Trypanosoma brucei TREU927] gi|62359390|gb|AAX79828.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma brucei] gi|70800978|gb|AAZ10886.1| mitochondrial DNA polymerase I protein A, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 958 Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 18/212 (8%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C+ A +G LV D +E RVLA ++G+ I DI+ + F Sbjct: 706 IRRCLGAPDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRK--TS 763 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-WEQAESHH 482 V+ E+R++ K + + Y G + +A G+ ++ Q ++ +S F+ + +++ Sbjct: 764 VTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVE---QALRVSSLFKSCFPTVDAYQ 817 Query: 483 LWMQDQYPEFAVKDKLIG---TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + DQ L G + ++ + + Q + + +G A V + G I+ Sbjct: 818 RRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIA 877 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 V R V++ H DV ++L ++ S Sbjct: 878 ------VEREVLQPHAPDVRLLLQVHDEIILS 903 >gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] Length = 883 Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 31/163 (19%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P RSEE +R I S+ Sbjct: 619 TQTGRLSSVDPNLQNIPV--RSEE----------------------GRLIRQAFIPSHEN 654 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIG 432 ++ +D + IE RVLA I G+ +AF GEDI+ TT + F D V+ E R Sbjct: 655 WQIWSSDYSQIELRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQA 714 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 K + + Y G + +A++ G+ +Q Q ++ FE++ Sbjct: 715 KAVNFGIVY--GISDY-GLANNTGISRKQAHQFIQ--RYFEEY 752 >gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29] gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29] Length = 890 Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 427 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQ-- 484 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 485 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 537 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 538 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 592 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 593 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 643 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 644 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 687 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 688 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728 >gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28] gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28] Length = 890 Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 138/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 427 VAKMKETHAVKSDEEVYGKGAKRAVPELEVVAEHVARKVHVLYDVKQTFLEELKKNEQ-- 484 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 485 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 537 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L +++H I + L Sbjct: 538 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYR 592 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 593 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 643 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 644 ------LEEGRKIR----------QAFVPSEEGWIIYAADYSQIELRVLAHIANDKGLVE 687 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 688 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 728 >gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] Length = 945 Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R I G LV AD + IE R+LA ++ E + A+ G D++ T F Sbjct: 689 IRRAFIPEAGWLLVAADYSQIELRILAHLSQEPALLAAYQEGADVHRLT--AQFLLEKTD 746 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 +S +R +GK++ + Y G + F Sbjct: 747 ISSSERRLGKMINFGVIYGMGPQRF 771 >gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 942 Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R+LA ++G++ I AF DI+ T A F P ++V+ R K + Sbjct: 715 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 774 Query: 436 ELALGY 441 + Y Sbjct: 775 NFGIVY 780 >gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] Length = 974 Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R+LA ++G++ I AF DI+ T A F P ++V+ R K + Sbjct: 747 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 806 Query: 436 ELALGY 441 + Y Sbjct: 807 NFGIVY 812 >gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] Length = 887 Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 24/133 (18%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + DG++ ++TGR S QN+P R EE G Sbjct: 599 LAGLPTYIKEDGKIHSRF-VQTLTQTGRLSSADPNLQNIPA--RIEE-----------GR 644 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 I ++ + A G +L AD + IE RVLA IA + I AF +GEDI+ Sbjct: 645 RIR----------QAFVPAHEGWQLFGADYSQIELRVLAHIAQDQHMIAAFKSGEDIHEA 694 Query: 412 TYAKAFNTPIDKV 424 T + F D V Sbjct: 695 TARRVFGLDPDTV 707 >gi|261327618|emb|CBH10594.1| mitochondrial DNA polymerase I protein A,putative [Trypanosoma brucei gambiense DAL972] Length = 958 Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust. Identities = 46/212 (21%), Positives = 91/212 (42%), Gaps = 18/212 (8%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C+ A +G LV D +E RVLA ++G+ I DI+ + F Sbjct: 706 IRRCLGAPDGYSLVSLDYEQVELRVLAHLSGDSALINVLTKSGDIHRSIAEIIFRK--TS 763 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-WEQAESHH 482 V+ E+R++ K + + Y G + +A G+ ++ Q ++ +S F+ + +++ Sbjct: 764 VTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVE---QALRVSSLFKSCFPTVDAYQ 817 Query: 483 LWMQDQYPEFAVKDKLIG---TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + DQ L G + ++ + + Q + + +G A V + G I+ Sbjct: 818 RRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIA 877 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 V R V++ H DV ++L ++ S Sbjct: 878 ------VEREVLQPHAPDVRLLLQVHDEIILS 903 >gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 886 Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420 +R + S+ G ++ +D + +E RVLA I G+ + F NGEDI+ +T + F+ P Sbjct: 643 LIRQAFVPSHEGWQIFSSDYSQVELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKP 702 Query: 421 IDKVSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 703 DQEIDRNMRRRAKAVNFGIVY 723 >gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] Length = 880 Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust. Identities = 41/153 (26%), Positives = 64/153 (41%), Gaps = 29/153 (18%) Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRG 350 L L + + +DG++ T ++TGR S QN+P R E +I Sbjct: 592 LAGLPKFIQADGKIH-TRFVQTLTQTGRLSSADPNLQNIPIRMEEGRKI----------- 639 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 R + S G +L AD + IE RVLA I+G+ +AF G+DI+ Sbjct: 640 --------------RQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIH 685 Query: 410 VTTYAKAFNTPIDK-VSKEQRAIGKVMELALGY 441 T + F D+ V+ + R K + + Y Sbjct: 686 AATARRVFGLAEDEAVNSDMRRQAKAVNFGIVY 718 >gi|66394986|ref|YP_240958.1| ORF037 [Staphylococcus phage G1] gi|62637008|gb|AAX92119.1| ORF037 [Staphylococcus phage G1] gi|182627951|gb|ACB89113.1| gp ORF120 [Staphylococcus phage A5W] Length = 286 Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust. Identities = 16/55 (29%), Positives = 32/55 (58%) Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++ + +++F NGEDI+ T + +N P+++V+KE+R K + L + Sbjct: 2 RIIGLFTKDPDMLQSFLNGEDIHKATASIVYNKPVEEVTKEERQATKAVNFGLAF 56 >gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42] gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42] Length = 879 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA I+ ++ I+AF N DI+ T F+ D Sbjct: 639 IRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSED 698 Query: 423 KVSKEQRAIGKVMELALGY 441 +V++ R K + + Y Sbjct: 699 EVTQAMRRQAKAVNFGIVY 717 >gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] Length = 876 Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust. Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 592 LQKVISKDNRIHTRFN-QTLAQTGRLSSVDPNLQNIPVR-------------LEEGRKIR 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ SN ++ AD + IE RVLA I ++ +AF N +D++ T Sbjct: 638 ----------KAFKPTSNDSVILSADYSQIELRVLAHITQDESMKEAFINEKDVHTATAM 687 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F+ ++V+ R K + + Y Sbjct: 688 KVFDVEANEVNALMRRQAKAVNFGIVY 714 >gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 895 Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + IE R+LA ++G++ I AF DI+ T A F P ++V+ R K + Sbjct: 668 IFAADYSQIELRILAHLSGDEALIDAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAV 727 Query: 436 ELALGY 441 + Y Sbjct: 728 NFGIVY 733 >gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12] gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12] Length = 934 Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust. Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R IA G + +D + IE R++A ++ + + AFA GEDI+ T A+ F + Sbjct: 696 IREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTPLE 755 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS +QR + KV+ L Y G F +A + GL+ Sbjct: 756 VSSDQRRMAKVINFGLIY--GMSAFG-LARNLGLE 787 >gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3] Length = 879 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA I+ ++ I+AF N DI+ T F+ D Sbjct: 639 IRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVSED 698 Query: 423 KVSKEQRAIGKVMELALGY 441 +V++ R K + + Y Sbjct: 699 EVTQAMRRQAKAVNFGIVY 717 >gi|229488378|ref|ZP_04382244.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121] gi|229323882|gb|EEN89637.1| DNA-directed DNA polymerase [Rhodococcus erythropolis SK121] Length = 520 Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +RS ++A G VVAD +E R+LA ++G D ++ A A +D+Y A+AF Sbjct: 293 TMRSSVVADPGHVFVVADAGQLEPRILAAMSG-DRRMMAAAGDDDLYALVGAEAFG 347 >gi|226308720|ref|YP_002768680.1| DNA polymerase [Rhodococcus erythropolis PR4] gi|226187837|dbj|BAH35941.1| putative DNA polymerase [Rhodococcus erythropolis PR4] Length = 516 Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +RS ++A G VVAD +E R+LA ++G D ++ A A +D+Y A+AF Sbjct: 293 TMRSSVVADPGHVFVVADAGQLEPRILAAMSG-DRRMMAAAGDDDLYALVGAEAFG 347 >gi|210135637|ref|YP_002302076.1| DNA polymerase I [Helicobacter pylori P12] gi|210133605|gb|ACJ08596.1| DNA polymerase I [Helicobacter pylori P12] Length = 903 Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 36/188 (19%) Query: 261 LKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 LK + H +I + + LN+L ++ + +L+L D ++ T G + TGR Sbjct: 593 LKILDKHPSIALILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQTGTA-TGR 645 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P + P GL +R IAS+ + L+ Sbjct: 646 LSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKEYCLLG 681 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE R+LA + + ++AF G DI++ T F ++KE+R+I K + Sbjct: 682 VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGG---DLAKEKRSIAKSINFG 738 Query: 439 LGYQGGAK 446 L Y G+K Sbjct: 739 LVYGMGSK 746 >gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5] gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5] Length = 881 Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust. Identities = 62/264 (23%), Positives = 105/264 (39%), Gaps = 52/264 (19%) Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI--IRSSRQTYALRMYLFLITGIDLVD 255 G +D +++ L E + +L+E I +L I S +Q L LF GI V Sbjct: 504 GIAVDREMLGNLHESFTRRLHELEEKIYELAGEAFNINSPKQLATL---LFEKMGIPPVK 560 Query: 256 MSE-------GTLKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLR 306 ++ L+++ I L + ++++L S+ +N LSE ++ GR+ Sbjct: 561 KTKTGYSTDVSVLEALAPQYEIANVLTQYRMVSKLLST-----YVNALSELINPWTGRIH 615 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P R E E VR Sbjct: 616 TSFN-QTVANTGRLSSSDPNLQNIPIRTEEGRE-------------------------VR 649 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 + + G V AD + IE R+ A ++G++ +K+FA +DI+ T F + Sbjct: 650 KAFVPAPGFCFVAADYSQIELRIAAHLSGDESMLKSFAEEKDIHAQTADAIFGSS----E 705 Query: 426 KEQRAIGKVMELALGYQGGAKVFK 449 R + K + + Y G FK Sbjct: 706 PNYRRMAKAVNFGILY--GISAFK 727 >gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273] gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272] gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272] gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273] Length = 891 Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust. Identities = 79/341 (23%), Positives = 137/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E K++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELDVVAEHVARKVHVLYDVKQTFIEELKKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L ++ H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVY 729 >gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 886 Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 29/150 (19%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L E + DGR+ T + TGR S QN+P T+T N G+ I Sbjct: 601 LLECIQPDGRIH-TRYLQTLTATGRLSSVDPNLQNIP---------TRT----NEGKQI- 645 Query: 355 DPLGLASDCVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R + S + + D + +E RVLA ++G++ +AF +G DI+ T Sbjct: 646 ----------RKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTA 695 Query: 414 AKAF--NTPIDKVSKEQRAIGKVMELALGY 441 K F ++P D+V+ R K + + Y Sbjct: 696 MKIFHLDSP-DEVTPLMRRHAKAVNFGIVY 724 >gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785] gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785] Length = 886 Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust. Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 29/150 (19%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L E + DGR+ T + TGR S QN+P T+T N G+ I Sbjct: 601 LLECIQPDGRIH-TRYLQTLTATGRLSSVDPNLQNIP---------TRT----NEGKQI- 645 Query: 355 DPLGLASDCVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R + S + + D + +E RVLA ++G++ +AF +G DI+ T Sbjct: 646 ----------RKAFVPSTKDGYIFSCDYSQVELRVLAHVSGDEHMQEAFKSGYDIHAHTA 695 Query: 414 AKAF--NTPIDKVSKEQRAIGKVMELALGY 441 K F ++P D+V+ R K + + Y Sbjct: 696 MKIFHLDSP-DEVTPLMRRHAKAVNFGIVY 724 >gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5] gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5] Length = 880 Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA I+ ++ I+AF N DI+ T F+ D Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKD 699 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718 >gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195] Length = 880 Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA I+ ++ I+AF N DI+ T F+ D Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKD 699 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718 >gi|308185239|ref|YP_003929372.1| DNA polymerase I [Helicobacter pylori SJM180] gi|308061159|gb|ADO03055.1| DNA polymerase I [Helicobacter pylori SJM180] Length = 897 Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust. Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 39/255 (15%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQT-YALRMYLFLITGIDL 253 +G++ID +L++ E L+ I+ L D + S +Q L L L Sbjct: 520 QGFKIDAPYFKRLEQEFKNELHVLERQILDLIGVDFNLNSPKQLGEVLYEKLELPKNKSH 579 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASS-GSAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L ++ + +L+L D ++ T Sbjct: 580 STDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLK------DKDDKIHTTFIQT 633 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + P GL +R IAS+ Sbjct: 634 GTA-TGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASS 668 Query: 373 GKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 + L+ D + IE R+LA + + ++AF G DI++ T F + ++K++R+I Sbjct: 669 KEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKKKRSI 725 Query: 432 GKVMELALGYQGGAK 446 K + L Y G+K Sbjct: 726 AKSINFGLVYGMGSK 740 >gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414] gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414] Length = 970 Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + +G + AD + IE R+LA ++ E ++A+ EDI+ T F Sbjct: 716 IRKAFLPESGYLMAAADYSQIELRILAHLSQEPILLQAYQQNEDIHTVTARLVFEK--SD 773 Query: 424 VSKEQRAIGKVMELALGYQGGAKVF 448 ++ ++R I K + + Y G+ F Sbjct: 774 ITSDERRIAKTINFGVIYGMGSLRF 798 >gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642] gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY] gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis] gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] Length = 880 Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA I+ ++ I+AF N DI+ T F+ D Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKD 699 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718 >gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92] gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92] Length = 879 Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 5/87 (5%) Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 LA D VR A G V D + IE R+LA + ++ +KAF N EDI+ T F Sbjct: 644 LAKD-VRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALLKAFENDEDIHARTAISIFG 702 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGA 445 + + RA+ K + L Y G+ Sbjct: 703 S----ADGQNRAVAKSINFGLIYGMGS 725 >gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis] Length = 880 Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA I+ ++ I+AF N DI+ T F+ D Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKTAMDVFHVAKD 699 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718 >gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] Length = 881 Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 L+ +D + IE RVLA I+G+ I+AF +G DI+ +T + FN P D ++R Sbjct: 653 LLSSDYSQIELRVLAHISGDKHLIEAFRHGADIHTSTAMRVFNIERPEDVTPNDRR 708 >gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10] Length = 887 Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust. Identities = 39/149 (26%), Positives = 62/149 (41%), Gaps = 27/149 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + DGR+ T + TGR S QN+P + T+ + + + + Sbjct: 602 LLDVIQPDGRVH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPS 653 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 DP G C D + +E RVLA ++G+ +AF G DI+ T Sbjct: 654 DPDGYIFSC----------------DYSQVELRVLAHVSGDVHMQEAFKTGYDIHSHTAM 697 Query: 415 KAF--NTPIDKVSKEQRAIGKVMELALGY 441 K F ++P DKV+ R K + + Y Sbjct: 698 KIFHLDSP-DKVTPLMRRHAKAVNFGIVY 725 >gi|167462369|ref|ZP_02327458.1| DNA-directed DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 375 Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 13/98 (13%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIA----GEDWKIKAFANGEDIYVTTYAKAFNT 419 VR+C I G V ADL IE R++A I G++ + F +G D+Y T + F Sbjct: 39 VRNCFIPRKGFTFVGADLGQIEPRIMAHIMHTKYGDNSMRQIFMDGVDLYTTGAMQTFGL 98 Query: 420 P----IDKV-----SKEQRAIGKVMELALGYQGGAKVF 448 +D+ + E R + K +LA+ Y K F Sbjct: 99 EEKYCLDEAYDPTGTFEPRKLMKTGQLAVSYDQSPKSF 136 >gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 29/117 (24%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P R+EE +R+ + S Sbjct: 627 TQTGRLSSVDPNLQNIPM--RTEE----------------------GRQIRTAFVPSEPN 662 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF----NTPIDKVSK 426 ++V AD + IE RVLA + G+ +AF NGEDI+ T F + P+D + + Sbjct: 663 WQIVGADYSQIELRVLAHMTGDKNMQRAFLNGEDIHAETARAVFGLKDDAPVDALMR 719 >gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] Length = 877 Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 593 LQKVISDDQRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 638 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 SD +I S AD + IE RVLA + ++ +AF +G+DI+ T Sbjct: 639 KAFKPTSD---DYVILS-------ADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAM 688 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V+ R K + + Y Sbjct: 689 KVFGVEKDQVNDLMRRQAKAVNFGIVY 715 >gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1] gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1] Length = 941 Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A GK ++ AD + IE R+ A +A AFA G+DI+ T + F + Sbjct: 701 IRDAFVAEPGKLILSADYSQIELRLAAHMADVPALKDAFARGDDIHALTAQEVFG----E 756 Query: 424 VSKEQRAIGKVMELALGY 441 V+++ RA K + ++ Y Sbjct: 757 VNRDTRARAKTINFSILY 774 >gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans] Length = 903 Score = 40.4 bits (93), Expect = 0.89, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G ++ AD + IE RVLA ++G++ +AF G DI+ T F D Sbjct: 663 IRKAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAMDVFGVSED 722 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 723 RVDARMRRQAKAVNFGIIY 741 >gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] Length = 877 Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 59/147 (40%), Gaps = 24/147 (16%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ ++TGR S QN+P + L G I Sbjct: 593 LQKVISDDQRIHTRFN-QTLAQTGRLSSIDPNLQNIPIR-------------LEEGRKIR 638 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 SD +I S AD + IE RVLA + ++ +AF +G+DI+ T Sbjct: 639 KAFKPTSD---DYVILS-------ADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAM 688 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGY 441 K F D+V+ R K + + Y Sbjct: 689 KVFGVEKDQVNDLMRRQAKAVNFGIVY 715 >gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] Length = 871 Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust. Identities = 20/79 (25%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + + ++++ D + I+ R LA ++G++ I+ F G DI+ T ++ F P+D Sbjct: 624 IRKAFVPGDENHILLSCDYSQIDLRSLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLD 683 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ + R K + + Y Sbjct: 684 QVTPDLRRKAKAVNFGIVY 702 >gi|326425081|ref|YP_004286304.1| DNA polymerase I [Tsukamurella phage TPA2] gi|323145733|gb|ADX31977.1| DNA polymerase I [Tsukamurella phage TPA2] Length = 625 Score = 40.4 bits (93), Expect = 0.90, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 14/129 (10%) Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 A R + PL S R+ + A G+++ D + IE +A +AG+ + FA G Sbjct: 364 ATGRMSISSPPLQQFSGPARAILTADEGQRMWSVDWSQIEPVTMALLAGDSEFLAPFAAG 423 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY-QGGAKVFKTMA----SHCGLDLQ 460 D+Y PI + + +R + KV+ L Y G AK+ +T+ S L Q Sbjct: 424 ADLY---------EPIMRAAGIERKVAKVLLLQTMYGSGAAKIAETIGHTPESAVQLRRQ 474 Query: 461 QFSQNVKST 469 F+ +S+ Sbjct: 475 MFAAMPESS 483 >gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273] gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273] Length = 945 Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 17/128 (13%) Query: 331 PRQERSEEILTQTIQALNRGET---------IADPLGLASDCVRSCIIASNGKK-LVVAD 380 PR R Q + A R + I PLG +R I +N L+ AD Sbjct: 664 PRTGRVHTSFNQHVTATGRLSSSNPNLQNIPIRTPLGRE---IRKAFIPTNPANWLLSAD 720 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+ A I+G+ I+AF NG DI+ T F+T + ++ + R K E+ G Sbjct: 721 YSQIELRIAAEISGDPKLIEAFRNGLDIHAETARVIFDT--EDITADMRR--KAKEVNFG 776 Query: 441 YQGGAKVF 448 G + F Sbjct: 777 VLYGIQPF 784 >gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13] Length = 877 Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S+ + AD + IE RVLA IA ++ I+AF DI+ T F+ D Sbjct: 637 IREAFIPSHEDWVIFAADYSQIELRVLAHIANDEKLIEAFKEDADIHTKTAMDVFHVSED 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715 >gi|307327074|ref|ZP_07606264.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113] gi|306887372|gb|EFN18368.1| DNA-directed DNA polymerase [Streptomyces violaceusniger Tu 4113] Length = 562 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%) Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 F+P+ LP S T N G + P VR ++A G +LVVAD + Sbjct: 291 FRPEYLPGGTVSGRWTT------NGGGALQIP-----KVVRRAVVADPGWRLVVADADQM 339 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 E RVLA I+ + ++ +G D+Y T +AF+ Sbjct: 340 EPRVLAAISRDPGLMEVAGSGRDLYATLSDRAFS 373 >gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As] Length = 922 Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 3/95 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A G + +D + IE R++A ++ + + AFA GEDI+ T A+ F + Sbjct: 684 IREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAAGEDIHRATAAEIFGVTSLE 743 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 VS +QR + KV+ L Y G F +A + GL+ Sbjct: 744 VSSDQRRMAKVINFGLIY--GMSAFG-LARNLGLE 775 >gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 883 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 31/163 (19%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P RSEE +R + S+ Sbjct: 619 TQTGRLSSVDPNLQNIPV--RSEE----------------------GRLIRQAFVPSHED 654 Query: 375 -KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIG 432 ++ +D + IE RVLA I G+ +AF GEDI+ TT + F D V+ E R Sbjct: 655 WQIWSSDYSQIELRVLASITGDKNMQEAFREGEDIHATTARRIFGLASNDDVTPELRRQA 714 Query: 433 KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 K + + Y G + +A++ G+ +Q Q ++ FE++ Sbjct: 715 KAVNFGIVY--GISDY-GLANNTGISRKQAHQFIQ--RYFEEY 752 >gi|192824042|ref|YP_001994504.1| gp46 [Mycobacterium phage KBG] gi|190610272|gb|ACE79794.1| gp46 [Mycobacterium phage KBG] Length = 608 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 23/148 (15%) Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 P P Q R+ + T A N L VR C +A +G+ +V D E Sbjct: 345 HPGINPLQARTARMSTNNPSAQN--------LPAGDWMVRRCFLADSGQLMVSVDYQAQE 396 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A + I+AF + D++ T S R +GK++ A + G Sbjct: 397 LRVLAALANDRTMIQAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGP 447 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFE 473 T+A+ G+ F + + + FE Sbjct: 448 ---STIAAQAGI---TFPEAKRVIAGFE 469 >gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23] gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23] Length = 888 Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420 +R + S+ G ++ +D + +E RVLA I G+ + F NGEDI+ +T + F+ P Sbjct: 645 LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAP 704 Query: 421 IDKVSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 705 DAEIDRNMRRRAKAVNFGIVY 725 >gi|219111043|ref|XP_002177273.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] gi|217411808|gb|EEC51736.1| pol1-like DNA polymerase [Phaeodactylum tricornutum CCAP 1055/1] Length = 774 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDC--VRSCIIASNGKKLVVADLAGIEA 386 N R S + T+T + +RG + + L D +R AS G L+VAD +E Sbjct: 468 NKSRVHCSLNLNTETGRLSSRGPNLQNQPALEKDTYQIRKAFEASPGNNLIVADYGQLEL 527 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+LA + G I+AF G D + T F+ KV Sbjct: 528 RLLASMTGCKSMIEAFEAGGDFHSRTAMDMFDYVKAKV 565 >gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] Length = 907 Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 6/91 (6%) Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 PLG +R +A GKK + D + +E R+LA + + + AF + +DI++ T Sbjct: 667 PLGAK---IRRGFVAGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMHDKDIHLQTAIV 723 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 F ++ + +R I K + L Y G K Sbjct: 724 LFG---EEEAAHKRNIAKTVNFGLLYGMGPK 751 >gi|294102246|ref|YP_003554104.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] gi|293617226|gb|ADE57380.1| DNA polymerase I [Aminobacterium colombiense DSM 12261] Length = 854 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 +G V AD + +E RVLA + E +AF DI+ T + FN V+ E R Sbjct: 626 DGNIFVAADYSQVELRVLAHLCDEKRLKEAFEARRDIHTETASWIFNVNPQMVTPELRRF 685 Query: 432 GKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 KV+ L Y G F +AS G+ Q+ Sbjct: 686 AKVVNFGLLY--GMSSF-GLASRLGIGQQE 712 >gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] Length = 888 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420 +R + S+ G ++ +D + +E RVLA I G+ + F NGEDI+ +T + F+ P Sbjct: 645 LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAP 704 Query: 421 IDKVSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 705 DAEIDRNMRRRAKAVNFGIVY 725 >gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I Length = 876 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D I+AF G DI+ T F+ + Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEE 695 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ R K + + Y Sbjct: 696 DVTANMRRQAKAVNFGIVY 714 >gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] Length = 888 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%) Query: 363 CVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420 +R + S+ G ++ +D + +E RVLA I G+ + F NGEDI+ +T + F+ P Sbjct: 645 LIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAP 704 Query: 421 IDKVSKEQRAIGKVMELALGY 441 ++ + R K + + Y Sbjct: 705 DAEIDRNMRRRAKAVNFGIVY 725 >gi|109948187|ref|YP_665415.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba] gi|109715408|emb|CAK00416.1| DNA polymerase I [Helicobacter acinonychis str. Sheeba] Length = 887 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 61/254 (24%), Positives = 107/254 (42%), Gaps = 37/254 (14%) Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQ-TYALRMYLFLITGIDL 253 +G++ID +L++ E K L+ I+ L D + S +Q + L L L Sbjct: 510 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDFNLNSPKQLSGVLYEKLNLPKNKSH 569 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSG-SAILKLNTLSEAVSSDGRLRGTLQFY 312 + LK + H +I + + LN+L+++ + +L+L D ++ T Sbjct: 570 STDEKNLLKIMDKHPSIPLILEYRELNKLSNTYITPLLRLK------DKDDKIHTTFIQT 623 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 G + TGR S QN+P + ++G I G S C++ Sbjct: 624 GTA-TGRLSSHSPNLQNIPVRS-------------SKGLLIRK--GFISSSKEYCLLG-- 665 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 D + IE R+LA + + ++AF G DI++ T F + +KE+R+I Sbjct: 666 ------VDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSRALFG---ENSAKEKRSIA 716 Query: 433 KVMELALGYQGGAK 446 K + L Y G+K Sbjct: 717 KSINFGLVYGMGSK 730 >gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] Length = 892 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 39/78 (50%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + G V AD + +E R+LA + + I+AF N EDI+ T ++ F + Sbjct: 653 IRKAFVPRPGWTFVSADYSQVELRILAHYSQDPILIEAFENDEDIHTRTASEVFQLFPEM 712 Query: 424 VSKEQRAIGKVMELALGY 441 ++++ R K + + Y Sbjct: 713 ITEDVRRQAKAINFGIVY 730 >gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311] gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311] Length = 879 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%) Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 IL + IT+L +L L + + DG++ T ++TGR S Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYMQDLTQTGRLSSV 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + L +G I ++ + ++ L+ +D + Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTKDAVLLSSDYSQ 658 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 IE RVLA I+G++ I AF G DI+ +T + F P D ++R Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706 >gi|47934802|gb|AAT39839.1| DNA polymerase [Uncultured T7-like podovirus] Length = 228 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 32/145 (22%) Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 F TG +VD E TL+++ +A+ L++ G I ++ + +AV DGR+ Sbjct: 106 FTETGQAVVD--EKTLETVTDIPEAQLIAEYLMV------GKRIAQVQSSLDAVEDDGRV 157 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 G + GA TGR +T + + + + P G +C R Sbjct: 158 HGQVNAIGAV-TGR--------------------MTHSSPNMAQTPAVGVPYGY--EC-R 193 Query: 366 SCIIASNGKKLVVADLAGIEARVLA 390 +C I +G KLV D +G+E R+LA Sbjct: 194 ACWIVPDGHKLVGVDASGLELRMLA 218 >gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 876 Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D I+AF G DI+ T F+ + Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFRRGLDIHTKTAMDIFHVSEE 695 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ R K + + Y Sbjct: 696 DVTANMRRQAKAVNFGIVY 714 >gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA ++ I+AF DI+ T + F+ + Sbjct: 637 IRQAFVPSEPGWAIFAADYSQIELRVLAHIANDEKLIEAFIEDMDIHTKTAMEVFHVNAN 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTSNMRRHAKAVNFGIVY 715 >gi|229127294|ref|ZP_04256290.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4] gi|228656127|gb|EEL11969.1| DNA-directed DNA polymerase [Bacillus cereus BDRD-Cer4] Length = 808 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ + GK L D +G E R++AW +G++ + F G D++ T + + Sbjct: 543 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAE 602 Query: 424 VSKEQRAIGKVMELALGYQG 443 + K++R K + Y G Sbjct: 603 IVKKERTDAKAGNFGISYGG 622 >gi|316973920|gb|EFV57463.1| DNA polymerase I domain protein [Trichinella spiralis] Length = 1661 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 P G + +R +AS G L+ AD + +E R+LA ++ + IK D++ AK Sbjct: 1400 PNGNNTLHIREIFVASEGCTLLSADFSQLELRILAHLSNDSKLIKILKEKIDVFTEIAAK 1459 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ---QFSQNVK 467 + V++ QR K + AL Y K++A+ G D + QF N K Sbjct: 1460 MNSIDRSAVNEIQRNRAKQICYALIY---GMCPKSLAAELGTDEEQAIQFYNNFK 1511 >gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676] gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676] Length = 891 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L +++H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMNHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 9/86 (10%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF---NTP 420 +R +A GKKL+ D + IE R+LA + ++AF +DI++ T F + P Sbjct: 667 IREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDKDIHMQTAIALFGEEDAP 726 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAK 446 + +R + K + L Y G K Sbjct: 727 L------KRNVAKTVNFGLLYGMGQK 746 >gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] Length = 878 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 64/282 (22%), Positives = 101/282 (35%), Gaps = 88/282 (31%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S ++ AD + IE RVLA IA ++ I AF +G DI+ T F+ + Sbjct: 638 IRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKE 697 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ R K + + Y G+ SQN+ T Sbjct: 698 EVTPNMRRQAKAVNFGIVY--------------GISDYGLSQNLNITRK----------- 732 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A E +K+ + GV Q KD +VQE A++ Sbjct: 733 ------------------EAAEFIKRYFEI-FPGVKQYMKD-------IVQE-----AKQ 761 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI- 601 V L+ RR YL TS+ R++ + N Sbjct: 762 KGYVTTLLHRRR------------------------YLPDITSRNFNLRSFAERTAMNTP 797 Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 +Q + DI+ + M + +K ++L VHDE++ E P Sbjct: 798 IQGSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAP 839 >gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842] gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842] Length = 877 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E +++ + Sbjct: 414 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELEKNEQ-- 471 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 472 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 524 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L ++ H I + L Sbjct: 525 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 579 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 580 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 631 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 674 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 675 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|30020006|ref|NP_831637.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|31415758|ref|NP_852498.1| DNA polymerase I [Bacillus phage phBC6A51] gi|29895551|gb|AAP08838.1| DNA polymerase I [Bacillus phage phBC6A51] Length = 802 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 38/80 (47%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ + GK L D +G E R++AW +G++ + F G D++ T + + Sbjct: 537 IRNFFVPKPGKILFFIDFSGFELRLMAWKSGDEVMTELFNTGGDMHRRTASVMTGKSEAE 596 Query: 424 VSKEQRAIGKVMELALGYQG 443 + K++R K + Y G Sbjct: 597 IVKKERTDAKAGNFGISYGG 616 >gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03] Length = 879 Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%) Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 IL + IT+L +L L + + DG++ T ++TGR S Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYMQDLTQTGRLSSV 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + L +G I ++ + ++ L+ +D + Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTKDAVLLSSDYSQ 658 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 IE RVLA I+G++ I AF G DI+ +T + F P D ++R Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706 >gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] Length = 878 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 64/282 (22%), Positives = 101/282 (35%), Gaps = 88/282 (31%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S ++ AD + IE RVLA IA ++ I AF +G DI+ T F+ + Sbjct: 638 IRQAFIPSEPDWVIFSADYSQIELRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKE 697 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 +V+ R K + + Y G+ SQN+ T Sbjct: 698 EVTPNMRRQAKAVNFGIVY--------------GISDYGLSQNLNITRK----------- 732 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A E +K+ + GV Q KD +VQE A++ Sbjct: 733 ------------------EAAEFIKRYFEI-FPGVKQYMKD-------IVQE-----AKQ 761 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI- 601 V L+ RR YL TS+ R++ + N Sbjct: 762 KGYVTTLLHRRR------------------------YLPDITSRNFNLRSFAERTAMNTP 797 Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 +Q + DI+ + M + +K ++L VHDE++ E P Sbjct: 798 IQGSAADIIKKAMIDLSKRLQKENMKARMLLQVHDELILEAP 839 >gi|12657895|ref|NP_075308.1| gp41 [Mycobacterium phage Bxb1] gi|12584036|gb|AAG59746.1| gp41 [Mycobacterium phage Bxb1] Length = 608 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%) Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 P P Q R+ + T A N L VR C +A G+ +V D E Sbjct: 345 HPGINPLQARTARMSTNNPSAQN--------LPAGDWMVRRCFLADPGQLMVSVDYQAQE 396 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A + I+AF + D++ T S R +GK++ A + G Sbjct: 397 LRVLAALANDRTMIQAFKDNADLHQITA---------DASGVDRKVGKMVNFAYVFGSGP 447 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFE 473 T+A+ G+ F + + + FE Sbjct: 448 ---STIAAQAGI---TFPEAKRVIAGFE 469 >gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W] gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II] Length = 881 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P ++ + +R + S+ G Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F ++P D+V+ + R Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709 Query: 432 GKVMELALGY 441 K + Y Sbjct: 710 AKATNFGIVY 719 >gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] Length = 879 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 24/123 (19%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + SDG++ T ++TGR S QN+P + L +G I Sbjct: 594 LQDYIMSDGKIH-TRYIQDLTQTGRLSSSDPNLQNIPVR-------------LEQGRLIR 639 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 ++ + +S L+ +D + IE RVLA I+G++ I AF DI+ +T Sbjct: 640 ----------KAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAM 689 Query: 415 KAF 417 + F Sbjct: 690 RVF 692 >gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334] Length = 881 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P ++ + +R + S+ G Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F ++P D+V+ + R Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709 Query: 432 GKVMELALGY 441 K + Y Sbjct: 710 AKATNFGIVY 719 >gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] Length = 881 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P ++ + +R + S+ G Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F ++P D+V+ + R Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709 Query: 432 GKVMELALGY 441 K + Y Sbjct: 710 AKATNFGIVY 719 >gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066] gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066] Length = 879 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%) Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 IL + IT+L +L L + + DG++ T ++TGR S Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYMQDLTQTGRLSSV 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + L +G I ++ + ++ L+ +D + Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTKDAVLLSSDYSQ 658 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 IE RVLA I+G++ I AF G DI+ +T + F P D ++R Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706 >gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942] gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942] Length = 880 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA I+ ++ I+AF N D++ T F+ D Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAMDVFHVAQD 699 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 700 EVTPAMRRQAKAVNFGIVY 718 >gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 891 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E +++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELEKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L ++ H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 881 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P ++ + +R + S+ G Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F ++P D+V+ + R Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709 Query: 432 GKVMELALGY 441 K + Y Sbjct: 710 AKATNFGIVY 719 >gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] Length = 881 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P ++ + +R + S+ G Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F ++P D+V+ + R Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709 Query: 432 GKVMELALGY 441 K + Y Sbjct: 710 AKATNFGIVY 719 >gi|94961605|gb|ABF48184.1| family A DNA polymerase [Trichococcus collinsii] Length = 241 Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + G KL +D + IE RVLA I+G++ +AF G+DI+ +T + F Sbjct: 81 IRQAFVPQQAGWKLFASDYSQIELRVLAHISGDEHLQEAFLEGQDIHTSTAMRVF 135 >gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200] gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200] Length = 891 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E +++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELEKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L ++ H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 881 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 29/130 (22%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 ++TGR S QN+P ++ + +R + S+ G Sbjct: 616 TQTGRLSSVDPNMQNIPARDEGK-------------------------IIRKAFVPSHEG 650 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTPIDKVSKEQRAI 431 ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F ++P D+V+ + R Sbjct: 651 WQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSP-DQVTPDMRRQ 709 Query: 432 GKVMELALGY 441 K + Y Sbjct: 710 AKATNFGIVY 719 >gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 891 Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust. Identities = 78/341 (22%), Positives = 137/341 (40%), Gaps = 60/341 (17%) Query: 122 LTKMEEGKALIAR---FCKGSIDSPPYDCTRANHV--------QAWQLFGEYCKRDVEAT 170 + KM+E A+ + + KG+ + P A HV Q F E +++ + Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELEKNEQ-- 485 Query: 171 RELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL-- 227 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILN 280 T+ I S +Q L + LF + ++ S L ++ H I + L Sbjct: 539 TEFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYR 593 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 +L S ++ L + V D T ++TGR S QN+P + Sbjct: 594 QLGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 L G I ++ + + G + AD + IE RVLA IA + ++ Sbjct: 645 ------LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVE 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 AF + DI+ T F D+V+ R K + + Y Sbjct: 689 AFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] Length = 880 Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA I+ + I+AF N DI+ T F+ D Sbjct: 640 IRQAFVPSEKDWLIFAADYSQIELRVLAHISKDQNLIEAFTNDMDIHTKTAMDVFHVAED 699 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 700 EVTSAMRRQAKAVNFGIVY 718 >gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] Length = 877 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150] gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150] Length = 879 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%) Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 IL + IT+L +L L + + DG++ T ++TGR S Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYVQDLTQTGRLSSV 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + L +G I ++ + ++ L+ +D + Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTEDAVLLSSDYSQ 658 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 IE RVLA I+G++ I AF G DI+ +T + F P D ++R Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706 >gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2] gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2] Length = 890 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G ++ AD + IE RVLA I+G++ +AF + DI+ T F D Sbjct: 650 IRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDVFGVSAD 709 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 710 QVDSNMRRSAKAVNFGIVY 728 >gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797] gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797] Length = 900 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I + +L+ AD + IE R+LA ++ + +AF G DI+ + F P D Sbjct: 653 IRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFREGADIHTAVASDIFRVPHD 712 Query: 423 KVSKEQRAIGKVMELALGY 441 +V + R K + + Y Sbjct: 713 QVDSDMRRTAKAVNFGVIY 731 >gi|309801320|ref|ZP_07695449.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] gi|308222209|gb|EFO78492.1| DNA-directed DNA polymerase [Bifidobacterium dentium JCVIHMP022] Length = 221 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 16/58 (27%), Positives = 35/58 (60%) Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 +E R++A ++G++ I+AF +G D + + + P+++++ +QR+ K M L Y Sbjct: 1 MELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAY 58 >gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488] gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum] gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488] Length = 877 Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102] gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102] Length = 877 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 676 FKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames] gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus anthracis str. A2012] gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W] gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820] gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684] gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248] gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066] gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055] gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America USA6153] gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B] gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94] gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames] gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W] gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820] gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684] gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248] Length = 877 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020] Length = 877 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI] gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI] Length = 877 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] Length = 932 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 38/77 (49%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 ++ I G +L+ D + IE RVLA +G+ +AF +G+DI+ A+ F V Sbjct: 694 KAFIPGEPGWELLCCDYSQIELRVLAHFSGDAALQEAFQSGKDIHTAVAAEVFEVDEANV 753 Query: 425 SKEQRAIGKVMELALGY 441 + R + K + + Y Sbjct: 754 DSDMRRVAKAVNFGVIY 770 >gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] Length = 879 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%) Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 IL + IT+L +L L + + DG++ T ++TGR S Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYVQDLTQTGRLSSV 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + L +G I ++ + ++ L+ +D + Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTEDAVLLSSDYSQ 658 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 IE RVLA I+G++ I AF G DI+ +T + F P D ++R Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706 >gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1] gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1] Length = 891 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|145490164|ref|XP_001431083.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124398185|emb|CAK63685.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASD--CVRSCIIASNGKKLVVADLAGIEARVL 389 R S I T+T + +R + + L D +R IA G KL+VAD +E RVL Sbjct: 558 RIHTSININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVL 617 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAF 417 A + I AF G D + T F Sbjct: 618 AHMTKCKAMIDAFLKGGDFHSRTVITMF 645 >gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 1015 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 335 RSEEILTQTIQALNRGETIADP-------LGLASDCVRSCII-ASNGKKLVVADLAGIEA 386 R QTI A R + ADP A +R+ I + L+ D + +E Sbjct: 739 RIHTTFEQTIAATGRLSS-ADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 797 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A + + I+AF +G D + + + P+++VS +QR+ K M L Y Sbjct: 798 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYGLAY 852 >gi|145510849|ref|XP_001441352.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124408602|emb|CAK73955.1| unnamed protein product [Paramecium tetraurelia] Length = 858 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 2/88 (2%) Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASD--CVRSCIIASNGKKLVVADLAGIEARVL 389 R S I T+T + +R + + L D +R IA G KL+VAD +E RVL Sbjct: 558 RIHTSININTETGRLSSRNPNLLNQPALEKDRYKIRKSFIAKKGNKLIVADYGQLELRVL 617 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAF 417 A + I AF G D + T F Sbjct: 618 AHMTKCKAMIDAFLKGGDFHSRTVITMF 645 >gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068] gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068] Length = 966 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G KL+ AD + IE RVLA +G+ +AFA+ DI+ ++ + V+ E R Sbjct: 728 GWKLMAADYSQIELRVLAHFSGDAALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSA 787 Query: 433 KVMELALGY 441 K + + Y Sbjct: 788 KAINFGVIY 796 >gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126] gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126] Length = 879 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 40/168 (23%) Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 IL + IT+L +L L + + DG++ T ++TGR S Sbjct: 577 ILEYRQITKLQSTYVLG--------------LQDYILEDGKIH-TRYVQDLTQTGRLSSV 621 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + L +G I ++ + ++ L+ +D + Sbjct: 622 DPNLQNIPVR-------------LEQGRLIR----------KAFVPSTEDAVLLSSDYSQ 658 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 IE RVLA I+G++ I AF G DI+ +T + F P D ++R Sbjct: 659 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706 >gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 887 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 23/145 (15%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDK 423 R+ + G K+ +D + +E RVLA + G+ + F +G+DI+ +T + F+ P +K Sbjct: 648 RAFKPSQPGWKIFSSDYSQVELRVLAHVTGDRNLQQDFIDGKDIHESTARRIFHLLPGEK 707 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 V+ R K + + Y G+ SQN+ T +QA H Sbjct: 708 VTPNMRRQAKAVNFGIVY--------------GISDYGLSQNIHVTR-----KQA---HE 745 Query: 484 WMQDQYPEFAVKDKLIGTACELVKK 508 ++Q + EF + I +L KK Sbjct: 746 FIQSYFKEFPGVQEYIENIVKLAKK 770 >gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] Length = 878 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 38/77 (49%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R+ + G L+ AD + IE R+LA ++ + I +F EDI+ T A+ F + V Sbjct: 637 RAFVPGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEEDIHRRTAAEVFGVLPEDV 696 Query: 425 SKEQRAIGKVMELALGY 441 + E R K + + Y Sbjct: 697 TPELRDRAKAVNFGIVY 713 >gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] Length = 885 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 29/150 (19%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + DGR+ Q + TGR S QN+P + L G+ I Sbjct: 600 LLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIPVR-------------LEEGKKI- 644 Query: 355 DPLGLASDCVRSCIIASNGKKLVVA-DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 R + SN + + D + +E RVLA ++G++ +AF G DI+ T Sbjct: 645 ----------RKAFVPSNSDGYIFSCDYSQVELRVLAHVSGDENMQEAFKTGYDIHAHTA 694 Query: 414 AKAF--NTPIDKVSKEQRAIGKVMELALGY 441 K F ++P ++V+ R K + + Y Sbjct: 695 MKIFHLDSP-NEVTPNMRRHAKAVNFGIVY 723 >gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98] Length = 877 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S G + AD + IE RVLA IA + I+AF + DI+ T F D Sbjct: 637 IRQAFIPSQEGWVMYAADYSQIELRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKD 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTANMRRQAKAVNFGIVY 715 >gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pyogenes M49 591] Length = 418 Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 190 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 247 Query: 433 KVMELALGY 441 K + + Y Sbjct: 248 KAVNFGIVY 256 >gi|298103520|ref|YP_003714762.1| gp12 [Streptomyces phage phiSASD1] gi|293338461|gb|ADE43479.1| gp12 [Streptomyces phage phiSASD1] Length = 618 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 10/138 (7%) Query: 314 ASRTGRWSGCVFQP--QNLPRQERSEEILTQTIQALNRGETIADP----LGLASDCVRSC 367 + R G+W +N+ Q R + Q++QA ++ P L + +R Sbjct: 336 SKRAGKWRSAYADNFLENVDAQGRIHPNV-QSMQARTFRMSVTQPAVQTLPSSDKMIRRA 394 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 ++A G+ +V D +E RVLA +A A A GED++ T F D + + Sbjct: 395 LLADPGEVMVSVDFQAVELRVLAALADVKRMKAAIAAGEDLHSFTARLVFG---DGFTDK 451 Query: 428 QRAIGKVMELALGYQGGA 445 R + K + Y GGA Sbjct: 452 DRKVSKGIAFGKVYGGGA 469 >gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42] gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42] Length = 891 Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] Length = 880 Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 891 Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 891 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131] gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131] Length = 880 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] Length = 880 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] Length = 880 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L] gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L] Length = 891 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 880 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201] gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201] gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 891 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|21929659|gb|AAM81962.1|AF445376_1 DNA polymerase I-like protein A [Trypanosoma brucei] Length = 958 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 45/212 (21%), Positives = 90/212 (42%), Gaps = 18/212 (8%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R C+ +G LV D +E RVLA ++G+ I DI+ + F Sbjct: 706 IRRCLGVPDGYSLVSLDYEQVELRVLAHLSGDSALISVLTKSGDIHRSIAEIIFRK--TS 763 Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-WEQAESHH 482 V+ E+R++ K + + Y G + +A G+ ++ Q ++ +S F+ + +++ Sbjct: 764 VTGEERSLAKKVVFGILYGAGP---RGLAQQMGVSVE---QALRVSSLFKSCFPTVDAYQ 817 Query: 483 LWMQDQYPEFAVKDKLIG---TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 + DQ L G + ++ + + Q + + +G A V + G I+ Sbjct: 818 RRIIDQCRSDGSVRTLSGRVRSIPDINDRVLTKRSHAERQAFNTVVQGSAADVMKLGMIA 877 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 V R V++ H DV ++L ++ S Sbjct: 878 ------VEREVLQPHAPDVRLLLQVHDEIILS 903 >gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2] gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2] Length = 884 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G ++ AD + IE RVLA I+ ++ +AF + DI+ T + F P + Sbjct: 644 IRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKEAFVHDMDIHTKTASDVFGVPAE 703 Query: 423 KVSKEQRAIGKVMELALGY 441 V + R K + + Y Sbjct: 704 AVDSDMRRSAKAVNFGIVY 722 >gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 891 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + ++A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|66391259|ref|YP_238608.1| ORF004 [Staphylococcus phage Twort] gi|62637189|gb|AAX92300.1| ORF004 [Staphylococcus phage Twort] Length = 1067 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 15/62 (24%), Positives = 34/62 (54%) Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE +++ + +++F GEDI+ +T + +N P++ ++ E+R K + + Sbjct: 775 DFSAIEMKIIGLYTKDPEMLESFLKGEDIHKSTASIVYNKPVEDITAEERQNTKKVNFGI 834 Query: 440 GY 441 Y Sbjct: 835 AY 836 >gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4] gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4] Length = 875 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S G K++ AD + IE RVLA IA ++ I AF D++ T F+ + Sbjct: 635 IRKAFIPSEEGWKILAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKTAMDVFHVSEE 694 Query: 423 KVSKEQRAIGKVMELALGY 441 V+ R K + + Y Sbjct: 695 DVTSMMRRSAKAVNFGIVY 713 >gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1] gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus pyogenes SSI-1] Length = 880 Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] Length = 880 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] Length = 880 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp Length = 579 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 339 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 398 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 399 EVTPNMRRQAKAVNFGIPY 417 >gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 880 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] Length = 880 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 652 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 709 Query: 433 KVMELALGY 441 K + + Y Sbjct: 710 KAVNFGIVY 718 >gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis] Length = 924 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 696 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAEDVTANDRRNA 753 Query: 433 KVMELALGY 441 K + + Y Sbjct: 754 KAVNFGIVY 762 >gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424] gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424] Length = 873 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 34/207 (16%) Query: 335 RSEEILTQT--IQALNRG-ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 R E+ LTQT + ++N + I + ++ I AS+ + ++ D + IE RVLA Sbjct: 602 RYEQTLTQTGRLSSVNPNLQNIPTRIEEGKKIRKAFIPASDDRVILSIDYSQIELRVLAH 661 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 +A + I AF + DI+ T ++ +D+V+ R K + + Y G F + Sbjct: 662 MAQDKGMIDAFTHDLDIHTKTASEVNGVSLDEVTPTMRREAKAVNFGIVY--GISDF-GL 718 Query: 452 ASHCGLDLQQFSQNV-KSTSTFE-------DWEQAESHHLWMQDQY------PEFAVKDK 497 +++ G+ ++ + + K TF D + H +++ Y PE K+K Sbjct: 719 SNNLGITRKRAKEFIDKYLETFSGVNKYMTDIVEFAKEHGYVETLYNRRRALPEINAKNK 778 Query: 498 LI--------------GTACELVKKAW 510 ++ GTA +++K A Sbjct: 779 IVASLNARLAMNTPIQGTAADIIKLAM 805 >gi|284032329|ref|YP_003382260.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] gi|283811622|gb|ADB33461.1| DNA-directed DNA polymerase [Kribbella flavida DSM 17836] Length = 551 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R ++A G +LVVAD + +E RVLA I+ + ++ N D+Y KAF+ Sbjct: 313 VIRRAVVADPGWRLVVADASQLEPRVLAAISRDPGLMEVAGNAADLYKAVSDKAFS 368 >gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] Length = 806 Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 5/69 (7%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK---VSKEQRAIG 432 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F IDK V+ R Sbjct: 578 LLSSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFG--IDKAADVTANDRRNA 635 Query: 433 KVMELALGY 441 K + + Y Sbjct: 636 KAVNFGIVY 644 >gi|311898817|dbj|BAJ31225.1| putative DNA polymerase [Kitasatospora setae KM-6054] Length = 562 Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R ++A G LVVAD A +E RVLA ++G D + A G D+Y A AF+ Sbjct: 324 LRRAVVADPGWLLVVADAAQLEPRVLAALSG-DAGLARTAAGGDLYAALAASAFHG---- 378 Query: 424 VSKEQRAIGKVMELALGYQGGA 445 +EQ +G ++ G GG Sbjct: 379 -DREQAKLG-LLGAMYGQTGGG 398 >gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 1025 Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 335 RSEEILTQTIQALNRGETIADP-------LGLASDCVRSCII-ASNGKKLVVADLAGIEA 386 R QTI A R + ADP A +R+ I + L+ D + +E Sbjct: 749 RIHTTFEQTIAATGRLSS-ADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A + + I+AF +G D + + + P+++V+ +QR+ K M L Y Sbjct: 808 RIMAHASHDKTLIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAY 862 >gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187] gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187] Length = 877 Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 473 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 525 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 526 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 580 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 581 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 630 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + + A Sbjct: 631 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 675 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 676 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 715 >gi|325188009|emb|CCA22551.1| hypothetical protein SELMODRAFT_88603 [Albugo laibachii Nc14] Length = 855 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A GKKL+VAD + +E R+LA I I+AF G D + T ++ Sbjct: 584 IRDAFVAPKGKKLIVADYSQLELRLLAHITQCKAMIEAFRAGGDFHSRTAVAMYDN 639 >gi|170044626|ref|XP_001849942.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167867696|gb|EDS31079.1| conserved hypothetical protein [Culex quinquefasciatus] Length = 503 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 10/140 (7%) Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 +C L+ + + Q + L+ G+ C E NVPRLV HK VH + Sbjct: 141 SCRLLDRTLNSVVQSCFFSKESLSSGYICRWLEN---------NVPRLVPPIHKYCVHAL 191 Query: 562 LPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN- 620 S R ++ ++K + + + ++ E +YG +L I++ S + G T N Sbjct: 192 STSHRTIIDKNMKNNSDTVVSISAINAGESSYGLELQTPILEKASPNFAANGATGTTSNP 251 Query: 621 GYDIVLTVHDEIVSETPDTP 640 G + + ++ + P P Sbjct: 252 GKPLTQAERERMIIQQPLLP 271 >gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232] gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232] Length = 880 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 31/151 (20%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + +DG++ T ++TGR S QN+P + L +G Sbjct: 595 LQDYILADGKIH-TRYVQDLTQTGRLSSVDPNLQNIPIR-------------LEQGR--- 637 Query: 355 DPLGLASDCVRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R S+ +++ +D + IE RVLA I+G++ I AF G DI+ +T Sbjct: 638 --------LIRKAFTPSHEDAVLLGSDYSQIELRVLAHISGDEHLIAAFNEGADIHTSTA 689 Query: 414 AKAFNTPIDK---VSKEQRAIGKVMELALGY 441 + F IDK V+ R K + + Y Sbjct: 690 MRVFG--IDKAADVTANDRRNAKAVNFGIVY 718 >gi|329939436|ref|ZP_08288772.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329301665|gb|EGG45559.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 558 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R ++A G LVVAD A +E RVLA I+ + ++ A +D+Y + +AF+ Sbjct: 315 VIRRAVVADPGHCLVVADAAQLEPRVLAAISRDPGLMEVAARADDLYQSVSERAFS 370 >gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] Length = 881 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQR 429 L+ +D + IE RVLA I+G++ I+AF +G DI+ +T + F P D ++R Sbjct: 653 LLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPNDRR 708 >gi|94961603|gb|ABF48183.1| family A DNA polymerase [Trichococcus patagoniensis] Length = 241 Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 ++ + G KL +D + IE RVLA I+G++ +AF G+DI+ +T F Sbjct: 83 QAFVPQQEGWKLFASDYSQIELRVLAHISGDEHLREAFLEGQDIHTSTAMHVF 135 >gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] Length = 931 Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S+ +++ AD + IE RVLA I G+ AF NGEDI+ T + F D Sbjct: 690 IRKAFVPSHSDWQILSADYSQIELRVLAHITGDKNLQAAFINGEDIHAATARRIFGIKDD 749 Query: 423 K-VSKEQRAIGKVMELALGY 441 + V R K + + Y Sbjct: 750 EPVEGNVRRQAKAVNFGIVY 769 >gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241] gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241] Length = 891 Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + + A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|192823947|ref|YP_001994593.1| gp46 [Mycobacterium phage Jasper] gi|190610542|gb|ACE80061.1| gp46 [Mycobacterium phage Jasper] Length = 609 Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 9/90 (10%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR C +A G+ + D E RVLA ++G+ ++AF D++ T A +D Sbjct: 374 MVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLRAFEEESDLHQVTADAA---GVD 430 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 R IGK+ + Y GGA T A Sbjct: 431 ------RKIGKMANFLVCYGGGAGKLATNA 454 >gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26] gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26] Length = 891 Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + + A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 877 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 637 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKD 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715 >gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 891 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + + A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196] gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196] Length = 891 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 53/308 (17%) Query: 147 CTRANHV--QAWQLFGEYCKRDVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDL 203 R HV Q F E K++ + ELF L +PL+ D+ + +G ++D Sbjct: 462 VARKVHVLYDVKQTFLEELKKNEQ--YELFTELELPLARVLADMEV-------KGVKVDT 512 Query: 204 DLVLKLQELIAQERKKLDEDIVKL--TDGIIRSSRQTYALRMYLFLITGIDLV------- 254 D + + E +A K+++++I KL T+ I S +Q L + LF + ++ Sbjct: 513 DRLRNMGEELAGRLKEMEQEIYKLAGTEFNINSPKQ---LGVILFENLNLPVIKKTKTGY 569 Query: 255 DMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 S L ++ H I + L +L S+ + L + V D T Sbjct: 570 STSADVLDKLMDRHEIIPNILHYRQLGKLNST-----YIEGLLKVVHEDSSKIHTRFNQV 624 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 ++TGR S QN+P + L G I ++ + + G Sbjct: 625 LTQTGRLSSTDPNLQNIPIR-------------LEEGRKIR----------QAFVPSEEG 661 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 + AD + IE RVLA IA + ++AF + DI+ T F D+V+ R K Sbjct: 662 WIMYAADYSQIELRVLAHIAKDPGLVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAK 721 Query: 434 VMELALGY 441 + + Y Sbjct: 722 AVNFGIVY 729 >gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293] gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293] Length = 891 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + + A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 877 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 637 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKD 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715 >gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342] gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342] Length = 891 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + + A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1] gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1] Length = 891 Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 112/280 (40%), Gaps = 47/280 (16%) Query: 172 ELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL--T 228 ELF L +PL+ D+ + +G ++D + + + E +A K+++++I KL T Sbjct: 487 ELFTELELPLARVLADMEV-------KGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSILSHSNITQLAKDLILNR 281 + I S +Q L + LF + ++ S L ++ H I + L + Sbjct: 540 EFNINSPKQ---LGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI--IPNILHYRQ 594 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S ++ L + V D T ++TGR S QN+P + Sbjct: 595 LGKLNSTYIE--GLLKVVHEDSSKIHTRFNQVLTQTGRLSSTDPNLQNIPIR-------- 644 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 L G I ++ + + G + AD + IE RVLA IA + + A Sbjct: 645 -----LEEGRKIR----------QAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDA 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 F + DI+ T F D+V+ R K + + Y Sbjct: 690 FQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVY 729 >gi|282721324|gb|ADA83773.1| gp47 [Mycobacterium phage SkiPole] Length = 609 Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421 VR C +A G+ + D E RVLA ++G+ ++AF D++ VT A + Sbjct: 374 MVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLRAFEEESDLHQVTADAAGVD--- 430 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 R IGK+ + Y GGA T A Sbjct: 431 -------RKIGKMANFLVCYGGGAGKLATNAG 455 >gi|192823857|ref|YP_001994775.1| gp44 [Mycobacterium phage DD5] gi|190610635|gb|ACE80153.1| gp44 [Mycobacterium phage DD5] Length = 608 Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421 VR C +A G+ +V D E RVLA +A + I+AF D++ VT A + Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTADAAGMD--- 430 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 R +GK+ Y GGA T A Sbjct: 431 -------RKVGKMANFLTVYGGGAGKLATNA 454 >gi|157786519|ref|YP_001491695.1| Putative DNA polymerase I [Mycobacterium phage Bethlehem] gi|40769458|gb|AAR89764.1| gp43 [Mycobacterium phage Bethlehem] Length = 608 Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 11/92 (11%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421 VR C +A G+ +V D E RVLA +A + I+AF D++ VT A + Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTADAAGMD--- 430 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 R +GK+ Y GGA T A Sbjct: 431 -------RKVGKMANFLTVYGGGAGKLATNAG 455 >gi|157786436|ref|YP_001491613.1| Putative DNA polymerase I [Mycobacterium phage U2] gi|40769356|gb|AAR89682.1| gp42 [Mycobacterium phage U2] Length = 608 Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421 VR C +A G+ +V D E RVLA +A + I+AF D++ VT A + Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTADAAGMD--- 430 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 R +GK+ Y GGA T A Sbjct: 431 -------RKVGKMANFLTVYGGGAGKLATNA 454 >gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51] gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 38/66 (57%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA + ++ ++F+ +D++ T ++ F P+ +V+K+ R K + Sbjct: 643 LLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAV 702 Query: 436 ELALGY 441 L Y Sbjct: 703 NFGLIY 708 >gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 38/66 (57%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R+LA + ++ ++F+ +D++ T ++ F P+ +V+K+ R K + Sbjct: 643 LLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRKAKAV 702 Query: 436 ELALGY 441 L Y Sbjct: 703 NFGLIY 708 >gi|203463403|ref|YP_002223985.1| gp44 [Mycobacterium phage Solon] gi|197312590|gb|ACH62944.1| gp44 [Mycobacterium phage Solon] Length = 609 Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 11/92 (11%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421 VR C +A G+ + D E RVLA ++G+ ++AF D++ VT A + Sbjct: 374 MVRRCFLADPGQIIASVDYRAQELRVLAALSGDQTMLRAFKEESDLHQVTADAAGVD--- 430 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 R IGK+ + Y GGA T A Sbjct: 431 -------RKIGKMANFLVCYGGGAGKLATNAG 455 >gi|192824130|ref|YP_001994685.1| gp44 [Mycobacterium phage Lockley] gi|190610360|gb|ACE79881.1| gp44 [Mycobacterium phage Lockley] Length = 608 Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 11/91 (12%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY-VTTYAKAFNTPI 421 VR C +A G+ +V D E RVLA +A + I+AF D++ VT A + Sbjct: 374 MVRRCFLADPGQLMVSVDYQAQELRVLAALANDRTMIRAFEEEADLHQVTADAAGMD--- 430 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 R +GK+ Y GGA T A Sbjct: 431 -------RKVGKMANFLTVYGGGAGKLATNA 454 >gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046] Length = 876 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN--TPIDKVSKEQRAIGK 433 L AD + IE RVLA + G++ ++AF G DI+ T FN P D+V+ R K Sbjct: 648 LFAADYSQIELRVLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENP-DEVTSLMRRTAK 706 Query: 434 VMELALGY 441 + + Y Sbjct: 707 AVNFGIVY 714 >gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 891 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKD 710 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729 >gi|50954578|ref|YP_061866.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951060|gb|AAT88761.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 570 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R ++A G KLVVAD A +E R+L +A +D ++ A G+D+Y Sbjct: 322 LRGAVVADPGWKLVVADAAQLEPRILTGLA-QDQRMAAAGRGQDLYT 367 >gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426] gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426] Length = 878 Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 638 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716 >gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 11 Base Pairs Of Duplex Dna After Addition Of Two Datp Residues gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna Length = 580 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418 >gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418 >gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)] Length = 876 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 636 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 695 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 696 EVTPNMRRQAKAVNFGIVY 714 >gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus] Length = 878 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 638 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716 >gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3] gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3] Length = 891 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQHDMDIHTKTAMDVFGVEKD 710 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729 >gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1] gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1] Length = 875 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S+ + AD + IE RVLA IA ++ I AF + DI+ T F+ D Sbjct: 635 IRQAFVPSSDDWVIFAADYSQIELRVLAHIANDENLIAAFHHDLDIHTKTAMDIFHVKED 694 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 695 EVTAHMRRQAKAVNFGIVY 713 >gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus] Length = 878 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 638 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTPNMRRQAKAVNFGIVY 716 >gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 10 Base Pairs Of Duplex Dna Following Addition Of A Single Dttp Residue gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 11 Base Pairs Of Duplex Dna Following Addition Of A Dttp And A Datp Residue. gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 15 Base Pairs Of Duplex Dna Following Addition Of Dttp, Datp, Dctp, And Dgtp Residues. gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 12 Base Pairs Of Duplex Dna Following Addition Of A Dttp, A Datp, And A Dctp Residue. gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Two Rounds Of Primer Extension, Following Incorporation Of Dctp And Dgtp. gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Three Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, And Dttp. gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Five Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, Dttp, And Datp. gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Cytosine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A Benzo[a]pyrene Adduct That Blocks Replication gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As Yet Unnamed) Dna Polymerase Fragment Length = 580 Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418 >gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair Position gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site (- 1 Basepair Position) gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion Site gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion Site (-1 Basepair Position) Length = 580 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418 >gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3] gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3] Length = 876 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 636 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 695 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 696 EVTPNMRRQAKAVNFGIVY 714 >gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax] Length = 877 Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 637 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTPNMRRQAKAVNFGIVY 715 >gi|324502441|gb|ADY41075.1| DNA polymerase I [Ascaris suum] Length = 1076 Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK-AFNTPID 422 VRS +A G LV AD + +E RVLA ++ ++ K F NG D + T + NT ID Sbjct: 835 VRSLFVAPPGFVLVSADYSQLELRVLAGLSKDEGLCKLFRNGGDFFQTVTDRWNANTSID 894 Query: 423 KVSKEQRAIGKVMELALGYQGGA 445 Q+ K + A+ Y GA Sbjct: 895 VPLDRQKV--KQLCYAIIYGMGA 915 >gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase Active Site gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active Site gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A Dna Polymerase gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine At The Polymerase Active Site Length = 580 Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418 >gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905] gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905] Length = 875 Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + SN L AD + IE RVLA ++ + ++AF G D++ T F+ D Sbjct: 635 IRQAFVPSNENWILFSADYSQIELRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSED 694 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 695 EVDSNMRRAAKAVNFGIVY 713 >gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] Length = 882 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 1/79 (1%) Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S +G ++ AD + IE R+LA I+ ++ I AF G DI+ T F + Sbjct: 642 IREAFIPSEDGWYMLAADYSQIELRILAHISQDENLIDAFQKGMDIHTRTAMDVFGVSEE 701 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 702 EVTSLMRRQAKAVNFGIVY 720 >gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17] gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17] Length = 877 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 637 IRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKD 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715 >gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52] gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52] Length = 876 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 636 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 695 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 696 EVTPNMRRQAKAVNFGIVY 714 >gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145] gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145] Length = 931 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-I 421 VR I + +++ AD + IE R++A I+ ++ + AF+ G DI+ T AK + + Sbjct: 690 VRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMDAFSKGLDIHTATAAKVYGVANL 749 Query: 422 DKVSKEQRAIGKVMELALGY 441 + V+ +QR K + + Y Sbjct: 750 EDVTSDQRRNAKAVNFGIIY 769 >gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] Length = 877 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 637 IRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKD 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715 >gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4] gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4] Length = 884 Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 644 IRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGKD 703 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 704 EVTSNMRRQAKAVNFGIVY 722 >gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus] Length = 878 Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA IA ++ I AF + DI+ T F+ D+V+ R K + Sbjct: 654 ADYSQIELRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFG 713 Query: 439 LGY 441 + Y Sbjct: 714 IVY 716 >gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp Length = 580 Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNFGIVY 418 >gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] Length = 878 Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 638 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEE 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTANMRRQAKAVNFGIVY 716 >gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 877 Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 638 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEE 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTANMRRQAKAVNFGIVY 716 >gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16] gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus] gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16] Length = 876 Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFQRDLDIHTKTAMDIFHVSEE 695 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 696 EVTANMRRQAKAVNFGIVY 714 >gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] Length = 1025 Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 335 RSEEILTQTIQALNRGETIADP-------LGLASDCVRSCII-ASNGKKLVVADLAGIEA 386 R QTI A R + ADP A +R+ I + L+ D + +E Sbjct: 749 RIHTTFEQTIAATGRLSS-ADPNLQNIPNRNAAGREIRAAFIPGEEFEYLMSCDYSQVEL 807 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 R++A + + I+AF +G D + + + P+++V+ +QR+ K M L Y Sbjct: 808 RIMAHASHDKTLIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAY 862 >gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44] gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44] Length = 884 Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 644 IRQAFIPSTEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQHDMDIHTKTAMDVFGVGED 703 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 704 EVTSNMRRQAKAVNFGIVY 722 >gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621] gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621] Length = 891 Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKD 710 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729 >gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] Length = 877 Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 637 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQHDMDIHTKTAMDVFGVGKD 696 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 697 EVTSNMRRQAKAVNFGIVY 715 >gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7] gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7] Length = 886 Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF--NTP 420 +R + S+ G K+ +D + IE RVL ++ + +AF G+DI+ +T + F ++P Sbjct: 645 IRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKEAFIEGQDIHSSTAMRVFGISSP 704 Query: 421 IDKVSKEQRAIGKVMELALGY 441 ++VS E R K + + Y Sbjct: 705 -EEVSSEMRRRAKAVNFGIVY 724 >gi|119960534|ref|YP_949044.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119947393|gb|ABM06304.1| putative DNA polymerase I [Arthrobacter aurescens TC1] Length = 563 Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ + A G KL+VAD + +E RVL +A +D K+ A +D+Y A+ F D+ Sbjct: 322 IRAAVHADPGHKLIVADASQLEPRVLVALA-QDTKMAEAARDKDLYAGIAAQGFGG--DR 378 Query: 424 VSKEQRAIGKVMELALGYQG 443 + +G V G G Sbjct: 379 AKAKIALLGAVYGATTGESG 398 >gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031] gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031] Length = 877 Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] Length = 877 Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] Length = 877 Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 889 Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 27/142 (19%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ T + TGR S QN+P R E ++I + + P G Sbjct: 611 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPARTEEGKQI--------RKAFVPSSPDGYI 661 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-T 419 C D + IE RVLA ++ + +AF G DI+ T K F+ + Sbjct: 662 YSC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLS 705 Query: 420 PIDKVSKEQRAIGKVMELALGY 441 +D+V+ QR K + + Y Sbjct: 706 SVDEVTSLQRRRAKAVNFGIVY 727 >gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 887 Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T + TGR S QN+P + T+ + + + + P G Sbjct: 609 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPSSPDGYIY 660 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420 C D + IE RVLA ++ + +AF G DI+ T K F+ + Sbjct: 661 SC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSS 704 Query: 421 IDKVSKEQRAIGKVMELALGY 441 +D+V+ QR K + + Y Sbjct: 705 VDEVTSLQRRRAKAVNFGIVY 725 >gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 887 Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T + TGR S QN+P + T+ + + + + P G Sbjct: 609 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPSSPDGYIY 660 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420 C D + IE RVLA ++ + +AF G DI+ T K F+ + Sbjct: 661 SC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSS 704 Query: 421 IDKVSKEQRAIGKVMELALGY 441 +D+V+ QR K + + Y Sbjct: 705 VDEVTSLQRRRAKAVNFGIVY 725 >gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii] Length = 876 Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLVV-ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S ++ AD + IE RVLA I+G+ I+AF DI+ T F+ + Sbjct: 636 IRQAFVPSEKDWVIFSADYSQIELRVLAHISGDQKLIEAFREDMDIHTKTAMDVFHVQKE 695 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 696 EVTSNMRRQAKAVNFGIVY 714 >gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301] Length = 877 Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545] Length = 877 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|302761166|ref|XP_002964005.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] gi|300167734|gb|EFJ34338.1| hypothetical protein SELMODRAFT_82310 [Selaginella moellendorffii] Length = 788 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA GK L+VAD +E R+LA ++G ++AF G D + T Sbjct: 522 IRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRT 570 >gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048] gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048] Length = 891 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA + ++AF + DI+ T F D Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFRHDMDIHTKTAMDVFGVGKD 710 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729 >gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104] Length = 877 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] Length = 877 Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|329114048|ref|ZP_08242812.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696587|gb|EGE48264.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 542 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 46/208 (22%), Positives = 83/208 (39%), Gaps = 30/208 (14%) Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE--DIYVTTYAKAFNTPID 422 RS I A G KL D E ++A ++G++ + +A G+ D++ T+ N Sbjct: 305 RSIISARTGAKLCYVDFDQFEVGIMAALSGDEELKRLYAAGDMYDLFANTHLGLVN---- 360 Query: 423 KVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 R K + L+ Y K A G++ Q+ + + +EDW+++ Sbjct: 361 -----NRKAAKQLFLSYAYGMSRKALIDAAYSLGVERQKAKEAFRLFQRYEDWKRS---- 411 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 +W + Q G ++ +R +G L K+ + VVQ S+ +R Sbjct: 412 IWAEFQGT---------GRVATVLGNHYRRIGKGQLS-GKEQRSAVSQVVQGTASLIFKR 461 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVY 570 L+ DV +VLP L++ Sbjct: 462 A-----LLAVASIDDVKVVLPMHDALLF 484 >gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585] gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585] Length = 877 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570] Length = 877 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39] gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39] Length = 877 Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|302769001|ref|XP_002967920.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] gi|300164658|gb|EFJ31267.1| hypothetical protein SELMODRAFT_88603 [Selaginella moellendorffii] Length = 788 Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA GK L+VAD +E R+LA ++G ++AF G D + T Sbjct: 522 IRKAFIAPPGKSLIVADYGQLELRILAHMSGCKSMLEAFEAGGDFHSRT 570 >gi|116671916|ref|YP_832849.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24] gi|116612025|gb|ABK04749.1| DNA-directed DNA polymerase [Arthrobacter sp. FB24] Length = 568 Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 3/80 (3%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R + A G KL+VAD + +E RVL +A +D K+ A +D+Y A+ F D+ Sbjct: 327 IRGAVHADPGHKLIVADASQLEPRVLVALA-QDSKMAEAARDKDLYAGIAAQGFGG--DR 383 Query: 424 VSKEQRAIGKVMELALGYQG 443 + +G + G G Sbjct: 384 AKAKVALLGAIYGATTGESG 403 >gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA] gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA] Length = 877 Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae] Length = 877 Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974] gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2] Length = 877 Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 649 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 708 Query: 435 MELALGY 441 + + Y Sbjct: 709 VNFGVVY 715 >gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 886 Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T + TGR S QN+P + T+ + + + + P G Sbjct: 608 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPSSPDGYIY 659 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420 C D + IE RVLA ++ + +AF G DI+ T K F+ + Sbjct: 660 SC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSS 703 Query: 421 IDKVSKEQRAIGKVMELALGY 441 +D+V+ QR K + + Y Sbjct: 704 VDEVTSLQRRRAKAVNFGIVY 724 >gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] Length = 870 Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 642 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 701 Query: 435 MELALGY 441 + + Y Sbjct: 702 VNFGVVY 708 >gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] Length = 870 Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F D V+ R K Sbjct: 642 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKA 701 Query: 435 MELALGY 441 + + Y Sbjct: 702 VNFGVVY 708 >gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 886 Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 25/141 (17%) Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T + TGR S QN+P + T+ + + + + P G Sbjct: 608 DGRIH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPSSPDGYIY 659 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TP 420 C D + IE RVLA ++ + +AF G DI+ T K F+ + Sbjct: 660 SC----------------DYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKIFHLSS 703 Query: 421 IDKVSKEQRAIGKVMELALGY 441 +D+V+ QR K + + Y Sbjct: 704 VDEVTSLQRRRAKAVNFGIVY 724 >gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB] Length = 878 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTATMRRQAKAVNFGIVY 716 >gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTATMRRQAKAVNFGIVY 716 >gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus] gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTATMRRQAKAVNFGIVY 716 >gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus] Length = 878 Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTATMRRQAKAVNFGIVY 716 >gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici] Length = 878 Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTATMRRQAKAVNFGIVY 716 >gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna (Open Form) Length = 580 Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNYGIVY 418 >gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 638 IRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHAKTAMDIFHVSEE 697 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 698 EVTATMRRQAKAVNFGIVY 716 >gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form). gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form) Length = 580 Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNYGIVY 418 >gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379] gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379] Length = 879 Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 23/127 (18%) Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P + + G+ I ++ + AS+ + Sbjct: 614 AQTGRLSSVNPNLQNIPTR-------------IEEGKKIR----------KAFVPASDDR 650 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 ++ D + IE RVLA IA + I AF + DI+ T + +D+V+ R K Sbjct: 651 VILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASDVNGVSLDEVTSSMRREAKA 710 Query: 435 MELALGY 441 + + Y Sbjct: 711 VNFGIVY 717 >gi|257870079|ref|ZP_05649732.1| histidine kinase [Enterococcus gallinarum EG2] gi|257804243|gb|EEV33065.1| histidine kinase [Enterococcus gallinarum EG2] Length = 613 Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 13/183 (7%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q GE ++ + + + R + + G+ +L L +T N G RI+ + QE + E Sbjct: 208 QPIGEMREQAIRIAKGDYSRKVAVH-GQDELGQLAETFNQLGERIE-----ETQEAMESE 261 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 R +LD + +TDG++ + R+ + + ++ ++ V E +SIL+ + Q+ ++ Sbjct: 262 RNRLDSVLSHMTDGVVATDRRGKVITINEMAMSLLN-VTSEEAVGQSILT---LLQIDEE 317 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR-TGRWSGCVFQPQNLPRQER 335 L +L S +L ++ V ++ LR + F R +G SG V ++ QE+ Sbjct: 318 YTLRKLLESPDEMLIERPNNDIVGTNLILR--IDFSMIRRESGFISGLVAVMHDVTEQEK 375 Query: 336 SEE 338 +E+ Sbjct: 376 NEQ 378 >gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation Length = 580 Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNYGIVY 418 >gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch Length = 580 Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D ++AF DI+ T F D Sbjct: 340 IRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMDIFQVSED 399 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 400 EVTPNMRRQAKAVNYGIVY 418 >gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005] Length = 876 Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 695 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 696 EVTATMRRQAKAVNFGIVY 714 >gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208] Length = 531 Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ D Sbjct: 291 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 350 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 351 EVDSLMRRQAKAVNFGIVY 369 >gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 887 Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + DGR+ T + TGR S QN+P + T+ + + + + Sbjct: 602 LLDVIQPDGRVH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPS 653 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +P G C D + +E RVLA ++G+ +AF G DI+ T Sbjct: 654 EPDGYIFSC----------------DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAM 697 Query: 415 KAFN--TPIDKVSKEQRAIGKVMELALGY 441 K F+ +P D+V+ R K + + Y Sbjct: 698 KIFHLESP-DEVTPLMRRHAKAVNFGIVY 725 >gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816] Length = 694 Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ D Sbjct: 454 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 513 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 514 EVDSLMRRQAKAVNFGIVY 532 >gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] Length = 887 Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust. Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%) Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + DGR+ T + TGR S QN+P + T+ + + + + Sbjct: 602 LLDVIQPDGRVH-TRYLQTLTATGRLSSVDPNLQNIPTR-------TEEGKQIRKAFVPS 653 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +P G C D + +E RVLA ++G+ +AF G DI+ T Sbjct: 654 EPDGYIFSC----------------DYSQVELRVLAHVSGDQNMQEAFKTGYDIHSHTAM 697 Query: 415 KAFN--TPIDKVSKEQRAIGKVMELALGY 441 K F+ +P D+V+ R K + + Y Sbjct: 698 KIFHLESP-DEVTPLMRRHAKAVNFGIVY 725 >gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] Length = 886 Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G ++ AD + IE RVLA I+ ++ +AF + DI+ T F +D Sbjct: 646 LRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMDVFGVGMD 705 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 706 EVDSNMRRSAKAVNFGIVY 724 >gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10] gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10] Length = 886 Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G ++ AD + IE RVLA I+ ++ +AF + DI+ T F +D Sbjct: 646 LRKVFVPSEPGWSILAADYSQIELRVLAHISDDERLKEAFVHDMDIHTKTAMDVFGVGMD 705 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 706 EVDSNMRRSAKAVNFGIVY 724 >gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8] Length = 876 Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S L+ AD + IE RVLA IA +D I+AF DI+ T F+ + Sbjct: 636 IRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAFRRDLDIHTKTAMDIFHVSEE 695 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 696 EVTATMRRQAKAVNFGVVY 714 >gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] Length = 875 Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust. Identities = 76/321 (23%), Positives = 130/321 (40%), Gaps = 45/321 (14%) Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 A + KG+ S P + A+H+ + ++ + A E ++L + D E L + Sbjct: 426 AVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELPLTFVLA 485 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT--DGIIRSSRQTYALRMYLFLITG 250 + +G +D + + ++ +A K L+E I L + I S +Q L + LF G Sbjct: 486 EMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEFNINSPKQ---LGVILFEKLG 542 Query: 251 IDLVDMSE---GTLKSILS-----HSNITQLAKDLILNRLASSG-SAILKLNTLSEAVSS 301 + V ++ T +L H+ I ++ L ++ S+ +LK+ T E Sbjct: 543 LPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKV-TDKETHKV 601 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 R TL ++TGR S QN+P + L G I Sbjct: 602 HTRFNQTL-----TQTGRLSSVDPNLQNIPIR-------------LEEGRKI-------- 635 Query: 362 DCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 636 ---RQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVE 692 Query: 421 IDKVSKEQRAIGKVMELALGY 441 D+V R K + + Y Sbjct: 693 QDEVDSLMRRQAKAVNFGIVY 713 >gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271] gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271] Length = 891 Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA + + AF DI+ T F D Sbjct: 651 IRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVDAFQRDMDIHTKTAMDVFGVEKD 710 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 711 EVTSNMRRQAKAVNFGIVY 729 >gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] Length = 879 Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust. Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 29/158 (18%) Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 I KLN+ L + ++ +G++ + ++TGR S QN+P + Sbjct: 584 ITKLNSTYAKGLVKDITREGKIHTRYE-QTLAQTGRLSSVNPNLQNIPTR---------- 632 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 + G+ I ++ + AS + ++ D + IE RVLA IA + I AF Sbjct: 633 ---IEEGKKIR----------KAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFK 679 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + DI+ T + +D+V+ R K + + Y Sbjct: 680 HDVDIHTKTASDVNGVSLDQVTSSMRREAKAVNFGIVY 717 >gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459] gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] Length = 875 Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ D Sbjct: 635 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 694 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 695 EVDSLMRRQAKAVNFGIVY 713 >gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] Length = 918 Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 35/78 (44%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A + V AD + IE R+L ++ ++ I AF +GEDI+ Sbjct: 680 IRKAFKAGKDRVFVSADYSQIELRILGHVSCDEGLINAFKSGEDIHEAVAVNVLGAQKGA 739 Query: 424 VSKEQRAIGKVMELALGY 441 VSK R+ K + + Y Sbjct: 740 VSKAVRSKAKAINFGVIY 757 >gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes str. 4b F2365] gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175] gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220] Length = 875 Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ D Sbjct: 635 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 694 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 695 EVDSLMRRQAKAVNFGIVY 713 >gi|229819538|ref|YP_002881064.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333] gi|229565451|gb|ACQ79302.1| DNA-directed DNA polymerase [Beutenbergia cavernae DSM 12333] Length = 585 Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%) Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +RS + A +G LV+AD A +E R+LA ++G+D + A A G D+Y Sbjct: 329 IRSAVRADDGWLLVIADAAQLEPRILAAMSGDDAMVAAGARG-DLYA 374 >gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23] gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23] Length = 875 Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ D Sbjct: 635 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 694 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 695 EVDSLMRRQAKAVNFGIVY 713 >gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580] Length = 879 Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA I+ + I+AF N D++ T F+ + Sbjct: 639 IRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEE 698 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 699 EVTPAMRRQAKAVNFGIVY 717 >gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2] gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2] Length = 879 Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA I+ + I+AF N D++ T F+ + Sbjct: 639 IRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIEAFTNDMDVHTKTAMDVFHVSEE 698 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 699 EVTPAMRRQAKAVNFGIVY 717 >gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99] Length = 885 Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ D Sbjct: 645 IRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQD 704 Query: 423 KVSKEQRAIGKVMELALGY 441 +V R K + + Y Sbjct: 705 EVDSLMRRQAKAVNFGIVY 723 >gi|300788813|ref|YP_003769104.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299798327|gb|ADJ48702.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 562 Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%) Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R+C+ A +G KLVVAD A +E RVL ++G D ++ A D+Y Sbjct: 312 VLRTCVRADSGWKLVVADAAQLEPRVLTALSG-DRRLADVAAATDLYA 358 >gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319] gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319] Length = 875 Score = 37.0 bits (84), Expect = 9.7, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 1/79 (1%) Query: 364 VRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + S G + AD + IE RVLA IA ++ I AF + DI+ T F+ + Sbjct: 635 IRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDIHTKTAMDVFHVERE 694 Query: 423 KVSKEQRAIGKVMELALGY 441 +V+ R K + + Y Sbjct: 695 EVTANMRRQAKAVNFGIVY 713 Searching..................................................done Results from round 2 >gi|254780127|ref|YP_003064540.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254039804|gb|ACT56600.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120698|gb|ADV02521.1| DNA polymerase A [Liberibacter phage SC1] gi|317120741|gb|ADV02563.1| DNA polymerase A [Liberibacter phage SC2] gi|317120802|gb|ADV02623.1| DNA polymerase A [Liberibacter phage SC2] gi|317120842|gb|ADV02663.1| DNA polymerase A [Liberibacter phage SC1] Length = 675 Score = 907 bits (2345), Expect = 0.0, Method: Composition-based stats. Identities = 675/675 (100%), Positives = 675/675 (100%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957611|dbj|BAH96662.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957616|dbj|BAH96666.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957626|dbj|BAH96674.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957641|dbj|BAH96686.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957661|dbj|BAH96702.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957666|dbj|BAH96706.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957671|dbj|BAH96710.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957676|dbj|BAH96714.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957686|dbj|BAH96722.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 907 bits (2343), Expect = 0.0, Method: Composition-based stats. Identities = 674/675 (99%), Positives = 674/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957621|dbj|BAH96670.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 906 bits (2341), Expect = 0.0, Method: Composition-based stats. Identities = 673/675 (99%), Positives = 673/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE VS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSETVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957561|dbj|BAH96622.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957566|dbj|BAH96626.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957571|dbj|BAH96630.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957576|dbj|BAH96634.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957581|dbj|BAH96638.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957586|dbj|BAH96642.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957591|dbj|BAH96646.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957601|dbj|BAH96654.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957631|dbj|BAH96678.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957636|dbj|BAH96682.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957646|dbj|BAH96690.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957651|dbj|BAH96694.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957656|dbj|BAH96698.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957681|dbj|BAH96718.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 905 bits (2339), Expect = 0.0, Method: Composition-based stats. Identities = 673/675 (99%), Positives = 673/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957596|dbj|BAH96650.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] gi|255957606|dbj|BAH96658.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 904 bits (2336), Expect = 0.0, Method: Composition-based stats. Identities = 672/675 (99%), Positives = 672/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD PYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDIPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEAKRYRK Sbjct: 661 LPLKAEGYEAKRYRK 675 >gi|255957556|dbj|BAH96618.1| DNA-directed DNA polymerase [Candidatus Liberibacter asiaticus] Length = 675 Score = 903 bits (2334), Expect = 0.0, Method: Composition-based stats. Identities = 672/675 (99%), Positives = 672/675 (99%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY Sbjct: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTKMEEGKALIARFC GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL Sbjct: 121 HLTKMEEGKALIARFCNGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY Sbjct: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYT 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS Sbjct: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA Sbjct: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP Sbjct: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES Sbjct: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA Sbjct: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN Sbjct: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG Sbjct: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 PLKAEGYEAKRYRK Sbjct: 661 FPLKAEGYEAKRYRK 675 >gi|315122935|ref|YP_004063424.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496337|gb|ADR52936.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 675 Score = 825 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 492/675 (72%), Positives = 567/675 (84%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T MPSDLL++ Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 LTKMEEGKALIARFCKGSI+ PYD RANHVQAWQLFGEYCKRDVEATREL+KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER++LDE+ +LT G+I S+R+T Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFERERLDEEFKELTAGVIGSARKTDL 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L YLFL TG+DL DM+E T+ + LS +I QL+K ++ NRL+SS SAILKLNTLS AVS Sbjct: 241 LNKYLFLYTGLDLPDMAESTVLTALSQPDIPQLSKAILNNRLSSSQSAILKLNTLSGAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 D RLRGTLQF+GASRTGRWSGCVFQPQNLPRQ + + + + I+ L+ G I DPL A Sbjct: 301 PDNRLRGTLQFFGASRTGRWSGCVFQPQNLPRQTLAVDEIERLIRGLDSGVPIKDPLRFA 360 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIAS GKKL+VADLAGIEARVLAW+AGE WK+ AFANGEDIY T Y+KAFN P Sbjct: 361 SDCVRSCIIASPGKKLIVADLAGIEARVLAWVAGEQWKLNAFANGEDIYKTAYSKAFNVP 420 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+K+QRAIGKVMELALGYQGGA+VF+ MAS GL+LQQFS+++K+T+T EDWEQA+ Sbjct: 421 LSDVTKDQRAIGKVMELALGYQGGARVFQKMASTLGLNLQQFSKSIKNTATSEDWEQAQR 480 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 LWMQ+ +PEFAV D IGTACELVK+AWRAKH+GV+QLWKD E F CV+++G SISA Sbjct: 481 RCLWMQETHPEFAVPDPFIGTACELVKEAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 540 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRV VP L+M++ ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN Sbjct: 541 RRVLGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 600 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDIL GM NATK GYDIVLTVHDEIV E PDTP FS LCSLMT+NP+WAKG Sbjct: 601 IVQAISRDILATGMINATKAGYDIVLTVHDEIVCEVPDTPEFSSDDLCSLMTRNPTWAKG 660 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEA RYRK Sbjct: 661 LPLKAEGYEAVRYRK 675 >gi|315121967|ref|YP_004062456.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495369|gb|ADR51968.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 673 Score = 813 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 499/675 (73%), Positives = 564/675 (83%), Gaps = 2/675 (0%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M KLFIDIETRSP+PLPKVGVWAYAE+A ITLCAYA +DE +KLWD T MPSDLL++ Sbjct: 1 MPKLFIDIETRSPKPLPKVGVWAYAEEAKITLCAYAHNDETIKLWDCTANPVMPSDLLKH 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L+D+TV+CVAHNSLFERILFKK+L I IP +RWICTS LAR NGLP+SLKNAC+AL F E Sbjct: 61 LKDDTVVCVAHNSLFERILFKKSLNITIPPRRWICTSTLARINGLPASLKNACMALKFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 LTKMEEGKALIARFCKGSI+ PYD RANHVQAWQLFGEYCKRDVEATREL+KRL PL Sbjct: 121 TLTKMEEGKALIARFCKGSIEESPYDAKRANHVQAWQLFGEYCKRDVEATRELYKRLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S+ ER LWLLDQ INDRGY IDL+LV KLQELIA ER+KLDE++ LT G+I SSR+T Sbjct: 181 SENERHLWLLDQEINDRGYAIDLNLVKKLQELIAFEREKLDEELKTLTFGVIGSSRKTDL 240 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L YLFL G+DL DM+E T+ + LS NITQ AKD++ NRL+SS SAILKLNTLS AVS Sbjct: 241 LNKYLFLYMGLDLPDMAESTIATALSQPNITQRAKDILNNRLSSSQSAILKLNTLSGAVS 300 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 D RLRGTLQFYGASRTGRWSGCVFQPQNLPR S E + + I++ N DPL A Sbjct: 301 PDLRLRGTLQFYGASRTGRWSGCVFQPQNLPRPNTSHETIEEAIESSN--FPSDDPLRFA 358 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 SDCVRSCIIAS GKKLVVADLAGIEARVLAWIAGE WK+ AFANGEDIY T Y+KAFN P Sbjct: 359 SDCVRSCIIASTGKKLVVADLAGIEARVLAWIAGEQWKLNAFANGEDIYKTAYSKAFNIP 418 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + V+K+QRAIGKVMELALGYQGGA+VF+TMAS+ GLDL+QFS+++K T+T +DWEQA+ Sbjct: 419 LSNVTKDQRAIGKVMELALGYQGGARVFQTMASNLGLDLKQFSKSIKQTATGDDWEQAQR 478 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 LWMQ+ YPEFAV D IGTACELVK AWRAKH+GV+QLWKD E F CV+++G SISA Sbjct: 479 RCLWMQETYPEFAVHDPFIGTACELVKTAWRAKHKGVVQLWKDCEEAFDCVIKDGRSISA 538 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 RRVA VP L+M++ ++V I LPS+R+LVY DVK D SYLNTAT+Q+MRERTYGGKLTEN Sbjct: 539 RRVAGVPPLLMKKQHQNVFITLPSNRKLVYRDVKSDRSYLNTATAQIMRERTYGGKLTEN 598 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKG 660 IVQAISRDIL GM NAT+ GYDIVLTVHDEIV ETPDTP FS LC LMT+NP WAKG Sbjct: 599 IVQAISRDILACGMINATRAGYDIVLTVHDEIVCETPDTPEFSSDELCFLMTQNPKWAKG 658 Query: 661 LPLKAEGYEAKRYRK 675 LPLKAEGYEA RYRK Sbjct: 659 LPLKAEGYEALRYRK 673 >gi|254781193|ref|YP_003065606.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|254040870|gb|ACT57666.1| putative DNA polymerase from bacteriophage origin [Candidatus Liberibacter asiaticus str. psy62] gi|317120755|gb|ADV02576.1| DNA polymerase A [Candidatus Liberibacter asiaticus] Length = 675 Score = 750 bits (1937), Expect = 0.0, Method: Composition-based stats. Identities = 401/677 (59%), Positives = 484/677 (71%), Gaps = 4/677 (0%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 M+ LFID ETRSP L K G+ YAE + L A+ +DD PV+LWD MP L + Sbjct: 1 MATLFIDFETRSPIDLTKCGICKYAEDVCVILFAFGFDDHPVELWDCVHDPVMPQVLKEA 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + V VAHNS FER + K +DIP RWICT VLAR+NGLPS+LK AL S Sbjct: 61 LENTDVTIVAHNSYFERTVLKACFNLDIPIHRWICTLVLARSNGLPSALKAVGEALKLSS 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 KMEEGK LIARFCKG YD + NH +AW+LFGEYCK DV TRE+FKRL PL Sbjct: 121 Q--KMEEGKELIARFCKGETHECLYDRNKPNHREAWRLFGEYCKGDVTVTREIFKRLEPL 178 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S E++LW LDQTINDRGY +D+ L L +++ ER KLD+++ LT G++ SSR Sbjct: 179 SSKEQELWYLDQTINDRGYCVDVALAHTLNQIVDVERTKLDQELESLTYGLVSSSRCLEK 238 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ +LFL TG+ L D++E T + +LS + +T A + NR+ +S SA+LKLNTL EA+ Sbjct: 239 LKTWLFLETGLHLEDLTETTCQRVLSSNKKLTPQAIQVFNNRMRASRSAVLKLNTLVEAM 298 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL-NRGETIADPLG 358 +SDGRLRGTLQF GASRTGRWSGCVF PQNLPR RS E L Q I L + DPL Sbjct: 299 NSDGRLRGTLQFLGASRTGRWSGCVFPPQNLPRPSRSHEELDQIITHLPTSITSDPDPLQ 358 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 + SDCVRSC+IAS GKKLVVADLAGIEARVLAW+AGE WK+KAF GED+YVTTYA++FN Sbjct: 359 IISDCVRSCVIASEGKKLVVADLAGIEARVLAWMAGEQWKLKAFETGEDLYVTTYARSFN 418 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 +V+K+QRAIGKVMELALGYQGGAK F+ MAS GL+L F+ VK+ S E+WE A Sbjct: 419 VAPAQVTKDQRAIGKVMELALGYQGGAKAFQKMASTTGLNLNTFAHLVKTNSAPEEWEDA 478 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 E+ WMQ+ +PE A++D IGTACE VKKAWR KH V +LW +L + F ++ G +I Sbjct: 479 ENFCRWMQENHPEHAIEDLFIGTACERVKKAWRQKHSRVSELWNELHQAFEQTIENGKAI 538 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 AR+ +VP + M++ K ++ ++LPS R LVY DV + SYLNT T QL RE TYGGKLT Sbjct: 539 IARKRRDVPLVYMKKDKNNLILMLPSGRSLVYRDVGNNRSYLNTTTRQLTREYTYGGKLT 598 Query: 599 ENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ENIVQA+SRDIL EGM NATK GYDIVLTVHDEIV ETPDT F+ L LMT NPSWA Sbjct: 599 ENIVQAVSRDILAEGMMNATKAGYDIVLTVHDEIVCETPDTDEFNASMLYHLMTSNPSWA 658 Query: 659 KGLPLKAEGYEAKRYRK 675 KGLPLKAEGYE+KRYRK Sbjct: 659 KGLPLKAEGYESKRYRK 675 >gi|167039879|ref|YP_001662864.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300915307|ref|ZP_07132621.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307724797|ref|YP_003904548.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] gi|166854119|gb|ABY92528.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X514] gi|300888583|gb|EFK83731.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X561] gi|307581858|gb|ADN55257.1| DNA-directed DNA polymerase [Thermoanaerobacter sp. X513] Length = 644 Score = 725 bits (1871), Expect = 0.0, Method: Composition-based stats. Identities = 215/698 (30%), Positives = 331/698 (47%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D PV++ D +P ++ Sbjct: 1 MRTLSIDIETFSSVDLAKSGVYRYAEAPDFEILLFGYSVDAGPVQVVDFACGEKIPKEIQ 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q + D V A N+ FERI K GI + W CT V + GLP SL+ A + Sbjct: 61 QAILDNNVTKWAFNAQFERICLSKYFGIHLAPDSWRCTMVWSAYLGLPLSLEGAAIVTG- 119 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 K+ +GK LI F CK ++ + H + W F Y RDVE + Sbjct: 120 -ADKKKLTKGKELIRYFSVPCKPTVTNGGRTRNLPEHAPEKWNSFKAYNLRDVEVELSIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++L P+ + E + ++LDQ INDRG ++DL+LV K + + R++L + +LTD + Sbjct: 179 EKLQKFPMPEEEWNNYILDQQINDRGIQLDLELVKKAIQCDEKVREELTSRLKELTD--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + ++ +L G++ + + ++K++L + + +++ R + S++ K Sbjct: 237 DNPNSVVQMKSWLSEK-GLETDSLDKASVKALLKEA--PEHLSEVLELRQLLAKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + AV +DGR RG LQFYGA+RTGR++G + Q QNLP+ S+ + + + Sbjct: 294 TAMENAVCTDGRARGLLQFYGANRTGRFAGRLIQVQNLPQNHLSDLEQARRLVRGGHFDA 353 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + G+ S+ +R+ + G K +VAD + IEARV+AW+AGE W+ + FA I Sbjct: 354 LEILYDSIPGVLSELIRTAFVPKKGYKFIVADFSAIEARVIAWLAGETWRNEVFATHGKI 413 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F P+++V+K R GK+ ELALGY G K M Sbjct: 414 YEASASQMFKVPLEEVTKGSPLRQKGKIAELALGYGGSVGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + + AWR + +++LW D+ Sbjct: 460 --------------------------ALDMGLTEEELKPLVYAWRNANPNIVRLWWDVDR 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581 V E R+ + I LPS R+L Y + + Sbjct: 494 AVKEAVTERCRTETHRI------RFEYRSGMLLIWLPSGRQLTYVKPRMGINSFGSEAVT 547 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 AT + R +YG K ENIVQAISRD+LC M+N ++G +IV+ VHDE+V E P Sbjct: 548 YEGVGATKKWERIESYGPKFVENIVQAISRDLLCHSMRNLDESGLNIVMHVHDEVVLEVP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V +C LM + P WA GL L+A+G+E Y+K Sbjct: 608 --LEICVQDVCVLMGQVPPWAHGLLLRADGFECDFYKK 643 >gi|313898058|ref|ZP_07831597.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312957086|gb|EFR38715.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 646 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 211/702 (30%), Positives = 320/702 (45%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S +PL K GV+ Y E I L AY+ D +PV++ D +P ++L Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDHQPVQVIDLACGEQIPKEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L DE V+ A N+ FERI + LG + + W C+ V A T GLP SL+ Sbjct: 61 LALEDEDVIKWAFNAAFERICLSRFLGYPTGEYLDPESWRCSMVWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K+ EGK LI FC+ + + W +F +Y RDVE Sbjct: 121 VLGLEKQ--KLTEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +RL P+ D + +DQ INDRG R+D++LV E+ + R KL E + ++T Sbjct: 179 MGIQQRLARFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTKLTETMKEIT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G++ + + + +L + ++ R + S+ Sbjct: 239 E--LENPNSVQQMKAWLSD-NGLETDTLGKKAVAELLKSA--PPKLSQVLTLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + + V +DGR RG QFYGA+RTGR+SG Q QNLP+ S+ +++ Sbjct: 294 VRKYQAMEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLSDLAEARSLVRSG 353 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 E + D S +R+ I G + +VAD + IEAR++AW AGE W+ FA Sbjct: 354 NFEAVELLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARIIAWFAGEKWRQDVFAK 413 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K ++ R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ L + AWR + +++ W Sbjct: 464 ------------------------------ALDMGLTEDELPPLVDAWRQSNPNIVKFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 ++ V+ + S + R + I LPS R+L Y K + Sbjct: 494 NVDHAVMEAVKFKHTTSEYGLTFSCR------SGMLFITLPSGRKLAYVKPKIGTNKFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +T + R +YG K ENIVQA +RDILC M+ T IV+ +HDE+V Sbjct: 548 QCITYEGIGSTKKWERLDSYGPKFVENIVQATARDILCYAMQ--TLRCCSIVMHIHDEVV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 606 IEA--DPSMSLDAICEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|225573258|ref|ZP_03782013.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] gi|225039390|gb|EEG49636.1| hypothetical protein RUMHYD_01449 [Blautia hydrogenotrophica DSM 10507] Length = 645 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 213/704 (30%), Positives = 328/704 (46%), Gaps = 92/704 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YA + L Y D V++ D +P +++ Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYTADGGDVRVVDLACGEQIPEEVI 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D +V A N++FER+ LG + + W CT V + T GLP SL++A AL Sbjct: 64 SALSDTSVTKWAFNAMFERVCLSNFLGEWLEPEGWHCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 + K+ EGK LI FC P T+AN + W+ F Y RDVE Sbjct: 124 EKQ--KLTEGKDLIRYFC------VPCRPTKANGGRTRNRPEHDPEKWERFKAYNLRDVE 175 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ KRL P+ D + + LDQ INDRG +D++LV + + A+ R++L + + + Sbjct: 176 TEMQIQKRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAMDARSREQLTDALQE 235 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + ++ +L G++ + + + ++ + + K ++ R + Sbjct: 236 LTG--LDNPNSVQQMKQWLAD-HGLETDTLGKKVVAELVRSA--PEPLKTVLSLRQQLAK 290 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 S++ K + AV +DGR G QFYGA+RTGR+SG + Q QNLP+ S+ + + Sbjct: 291 SSVKKYAAMENAVCADGRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMSDLAQARALMR 350 Query: 347 LNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 E I D S +R+ + +G+K +VAD + IEARV+AW AGE W++K F Sbjct: 351 GGNYEAISMLYEDIPDTLSQLIRTAFVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVF 410 Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 +G+DIY + ++ F+ P++K V+ R GK+ ELALGY G K+M Sbjct: 411 EDGDDIYSASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------- 462 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A++ L + + AWR + + Q Sbjct: 463 --------------------------------ALEMGLAEEELQPLVDAWRTSNPMITQF 490 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 W D+ V++ + + + + I LPS RRL Y + + Sbjct: 491 WWDVDRAVKECVKKRVPMESHGLH------FDYRSAMLFITLPSGRRLAYVKPRIGENQF 544 Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + + R +YG K ENIVQ +RDILC M+ T IV VHDE Sbjct: 545 GRESVTYMGVSGAKKWERLESYGPKFVENIVQGTARDILCYAMR--TLRNCAIVAHVHDE 602 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 I+ E S+ +C M + PSWAKGL L+A+GYE + Y+K Sbjct: 603 IIIEADR--RMSLSAVCEQMGRTPSWAKGLKLRADGYECEFYQK 644 >gi|313895585|ref|ZP_07829141.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975711|gb|EFR41170.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 645 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 213/698 (30%), Positives = 316/698 (45%), Gaps = 77/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + ID+ET S PL K GV+ YAE I L Y+ D V++ D +P ++L Sbjct: 1 MKSISIDVETFSSVPLAKAGVYKYAESEDFEILLFGYSVDGGEVQVVDLANGEEIPKEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DETV A N++FER+ + LGI + W C+ + A T GLP SLK+ L Sbjct: 61 AALTDETVTKWAFNAMFERVCLSRHLGIHLKPNAWRCSMIWAATLGLPLSLKDVGAVLWL 120 Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K+EEGK LI FC + A+ + W+LF EY KRDVE + Sbjct: 121 DRQ--KLEEGKDLIRYFCVPCKATRSNGGRTRNLPADAPEKWKLFTEYNKRDVETEMAIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 RL P+ + E + +++DQ INDRG +D V + + + E LTD + Sbjct: 179 ARLKKFPVPESEWENYVIDQEINDRGILVDTTFVTQAICCDERSKAVCLERAQNLTD--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+ + +++ + +L T ++++ R S +++ K Sbjct: 237 ENPNSPLQLMDWLHGK-GLSVESLAKSEVTKMLK--TATGDVREVLELRQQLSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +D R RG QFYGA+RTGR++G + Q QNLP+ ++ +T+ E Sbjct: 294 MAMEAVTGADHRARGLFQFYGANRTGRFAGRLIQLQNLPQNHLAQLKEVRTLVKDGDFEL 353 Query: 353 IADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S +R+ + + VVAD A IEARVLAW+AGE W + F DI Sbjct: 354 LDMLYDSTSDVLSQLIRTSFVPHPACRFVVADYAAIEARVLAWLAGEQWVLDVFREHGDI 413 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T ++ F+ ++K + + R GK L+ GY G M Sbjct: 414 YCETASRMFHCKVEKHGENADLRQKGKQAVLSCGYGGSVGALVAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 AV+ + + + WRA + ++Q W D+ Sbjct: 460 --------------------------AVESGMKEEELQPLVDLWRASNPHIVQFWWDVDR 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA--- 583 V+ + + V + I LPS R L Y+ + + Sbjct: 494 AVKTCVKRRVEVETHGIRCV------YKSGVLFIRLPSGRELAYAKPRIGENRFGGESVT 547 Query: 584 ------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 T + R T+GGKL ENI Q +RD+L MK G+DIV+ VHDEIV E P Sbjct: 548 YEGLGMTKKWERIETFGGKLVENITQGTARDLLVFAMKQLRNRGFDIVMHVHDEIVLEVP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV +CS+M +NP WAKGLPLKA+GYE + YRK Sbjct: 608 YGVS-SVEEICSIMAENPPWAKGLPLKADGYECEFYRK 644 >gi|153955279|ref|YP_001396044.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219855702|ref|YP_002472824.1| hypothetical protein CKR_2359 [Clostridium kluyveri NBRC 12016] gi|146348137|gb|EDK34673.1| Phage-related DNA polymerase [Clostridium kluyveri DSM 555] gi|219569426|dbj|BAH07410.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 644 Score = 716 bits (1847), Expect = 0.0, Method: Composition-based stats. Identities = 208/700 (29%), Positives = 319/700 (45%), Gaps = 82/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ + IDIET S L K GV+ YAE I L Y+ D V++ D +P++++ Sbjct: 1 MNSISIDIETFSSANLQKCGVYRYAESDDFEILLFGYSVDGGAVQVVDLACGEKIPNEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D +V A N++FER+ K L + + W C+ V + GLP SL+ L Sbjct: 61 NALMDNSVTKWAFNAMFERVCLSKWLNLTDYLDPTSWKCSMVWSAYMGLPLSLEGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K+ EGK LI FC + + + W+ F Y RDVEA Sbjct: 121 GLEKQ--KLTEGKDLIKYFCTPCSPTKSNGGRVRNLPKHDMDKWERFKAYNIRDVEAEMS 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +RL P+ + + LDQ INDRG ID+ V + ++ Q R+KL + +T+ Sbjct: 179 IQQRLSKFPIPENIWSEYHLDQKINDRGIAIDMAFVKQAVKMDEQSREKLMALMQDITN- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + ++ +L G++ + + + +L + ++ R + S+I Sbjct: 238 -LENPNSIQQMKEWLAD-NGLETDSLGKKAVAEMLK--TAPEPLGTVLELRQQLAKSSIK 293 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + AV +DGR RG QFYGA+RTGR+SG + Q QNLP+ + + + Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353 Query: 351 ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + + S+ +R+ + G K +VAD + IEARV+AW+AGE W+I F NG Sbjct: 354 DALTLIYDSIPEVLSELIRTAFVPQEGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGG 413 Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ FN P++K V+ R GK+ ELALGY G K+M Sbjct: 414 DIYCASASQMFNVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKSMG------------ 461 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ + + + AWR + + +LW D+ Sbjct: 462 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 493 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581 V++ + + + IVLPS RRL Y + + Sbjct: 494 DHAVKTCVKQKIPTETHGIKFI------YQSGMLFIVLPSGRRLSYVKPRMGENVFGGES 547 Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQAISRDILC M+ T IV VHDEI+ E Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIIIE 605 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ T+C M + P+WA GL L A+GYE + Y+K Sbjct: 606 ADM--RMSLSTICEQMARTPTWANGLLLSADGYECQFYQK 643 >gi|323484113|ref|ZP_08089483.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] gi|323402555|gb|EGA94883.1| hypothetical protein HMPREF9474_01234 [Clostridium symbiosum WAL-14163] Length = 646 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 209/695 (30%), Positives = 330/695 (47%), Gaps = 77/695 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L K GV+AYA+ + L AY++D ++ D + +P ++ + Sbjct: 5 LEIDIETYSDVDLIKCGVYAYADSPAFEVLLFAYSFDGGETQVIDLAQGEELPGEVSAAI 64 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D+ VM A N+ FER K G + + W C++V A LP SL+ L + Sbjct: 65 FDDDVMKTAFNANFERTCLSKHFGKQLSPESWHCSAVQAAMLALPRSLEEVGAVLGLEQQ 124 Query: 122 LTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 KM+EGK LI FC + + + W+LF YC RDV+ +E+ ++L Sbjct: 125 --KMKEGKDLIRYFCMPCKPTKANGGRTRNLPCHAPEKWELFKSYCIRDVDVEKEIRRKL 182 Query: 178 --IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 P+ + E +L+ LDQ INDRG +D +LV + + + + +LT + + Sbjct: 183 QHFPIPESEMELYRLDQKINDRGVLVDRELVRQAVSCDLLYKDVVTKRAYELTG--LENP 240 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 ++ +L G+++ +S+ T+ ++ S+ ++L+ RL + +++ K + Sbjct: 241 NSVAQIKSWL-GENGVEMESLSKKTVAGLIEESDGE--VQELLRLRLLMAKTSVKKYEAM 297 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI-- 353 +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + + + R E + Sbjct: 298 ERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHILDLEMARNLVKQGRFEDVEL 357 Query: 354 --ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 + S+ +R+ I G + VVAD + IEARVLAW++GE W+++ FA+ IY Sbjct: 358 LYDSTPNVLSELIRTAFIPKPGYRFVVADFSAIEARVLAWLSGERWRLEVFASHGKIYEA 417 Query: 412 TYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + + F+ PI++V+K R GK+ ELALGY G +M Sbjct: 418 SASAMFHVPIEEVTKGSPFRQKGKISELALGYGGAVGALTSMG----------------- 460 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A+ L+ + AWR+ + + Q W D+ Sbjct: 461 -----------------------ALDMGLVEEELAPLVSAWRSANPHITQFWWDVDAAAV 497 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT------- 582 V E A R+V + + LPS R+L Y + + Sbjct: 498 KAVTEKKKTRA------GRIVFEYKSGILFVELPSGRKLSYVKPRMALNKFGRNGLTYEG 551 Query: 583 --ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 + R TYG KL ENIVQ +RD+L E M + GY IV+ HDEI++E P+ Sbjct: 552 IAENKKWDRIETYGPKLVENIVQGTARDLLAEAMLRVEEMGYPIVMHCHDEIIAEVPEGT 611 Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV +C++M P WA GLPL+A+GYE Y+K Sbjct: 612 -GSVEEMCAVMAVQPEWADGLPLRADGYECAFYKK 645 >gi|297587100|ref|ZP_06945745.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] gi|297575081|gb|EFH93800.1| DNA-directed DNA polymerase [Finegoldia magna ATCC 53516] Length = 643 Score = 711 bits (1835), Expect = 0.0, Method: Composition-based stats. Identities = 221/698 (31%), Positives = 337/698 (48%), Gaps = 79/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M KL ID+ET S L K GV+ YAE I L AY+ +D VK+ D +P ++L Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSINDGEVKVIDLANGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DE V A N+ FER+ + LG + + W CT + + GLP SL+ L Sbjct: 61 SALSDENVEKWAFNANFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + KM EGKALI F CK + + ++H ++ W F EY +RDVE + Sbjct: 121 DKQ--KMNEGKALIRYFSTPCKPTKTNGMRIRNLSHHDLEKWSTFKEYNQRDVETEMAIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L P+S E + + +DQ INDRG ID LV + R++ + ++LT + Sbjct: 179 KKLSAFPMSHSEWENYWIDQNINDRGILIDEVLVDSAIKFDGILREENMDRAIELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +++ ++S L ++ K+++ R S S++ K Sbjct: 237 ENPNSPLQLKEWLNKK-GLEIDSLAKKDVESALKNT--EGDIKEVLELRQELSKSSVRKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + + D R RG +QFYGA+RTGR+SG + Q QNL R + L +++ ET Sbjct: 294 DAMKNVKGKDNRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYET 353 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + P + S +R+ IA G + +++D + IEARVLAW+AGE W + AF NGEDI Sbjct: 354 MEILYESPSDILSQLIRTAFIAKEGTRFIISDFSAIEARVLAWLAGEQWVLDAFENGEDI 413 Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T ++ F P++K V+ R GK+ LA GYQG K M Sbjct: 414 YCRTASRMFGVPVEKHGVNGHLRQKGKIATLACGYQGALGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 ++ L + + +WR + ++ LW D+ Sbjct: 460 --------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDS 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 VV+ R LV+ K + I LPS RRL Y K + + Sbjct: 494 VVKRVVK------TRTKEKYKSLVISYEKGILFIELPSKRRLAYPKAKIGTNRFGGESIV 547 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ + +YGGK ENIVQAI+RDIL E M K G++IV+ +HDE+V E Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE-- 605 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + S+ + +M+ PSWA GL L A+G+E++ Y+K Sbjct: 606 -SDSSSIEEINQIMSLVPSWAPGLILDADGFESEFYKK 642 >gi|317132759|ref|YP_004092073.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] gi|315470738|gb|ADU27342.1| DNA-directed DNA polymerase [Ethanoligenens harbinense YUAN-3] Length = 662 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 220/718 (30%), Positives = 323/718 (44%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ Y I L Y+ D PVK+ D +P D+L Sbjct: 1 MKTISIDIETFSDVDLGKCGVYRYCSSPAFEILLFGYSVDGGPVKVVDLACGEKIPEDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98 L D+TV+ A N+ FER+ + L + + W C+ V Sbjct: 61 DALTDDTVLKWAFNANFERVCLSRYLRDMGRGLDPFHDNHPLSLEHARFLNPEGWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQ 154 A T GLP SLK L ++ KM+EGKALI F + ++ Sbjct: 121 WAATMGLPLSLKGVGAVLQLADQ--KMDEGKALIKYFSVPCAPTKANGGRTRNLPSDDPG 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W F +Y +RDVE + ++L P+ D D + +DQ INDRG RID+DLV K ++ Sbjct: 179 KWATFKKYNQRDVEVEMMIQRKLRSFPVPDFVWDEYHIDQEINDRGVRIDMDLVEKAIDM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + R +L E + +T+ + + ++ +L G+++ + + + ++L Sbjct: 239 DTRSRSELTEKMQAITN--LENPNSVQQMKQWLSD-NGMEVDSLGKKAVTALLK--TAPP 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +++ R + S++ K T+ AV SD R RG FYGA+RTGRW+G + Q QNLP+ Sbjct: 294 ELTEVLELRQQLAKSSVKKYQTMQRAVCSDSRARGMFMFYGANRTGRWAGRLIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + E + D S +R+ I +G + VAD + IEARV Sbjct: 354 NHLPDLDAARALVKSGDYEAVKMIYEDVPDTLSQLIRTAFIPKDGCRFYVADFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446 +AW AGE WK AFANGEDIY +T + F+ P+ K V+ E RA GK+ ELA GY G Sbjct: 414 IAWYAGEKWKSDAFANGEDIYCSTARRMFHKPVVKHGVNGELRAKGKIAELACGYGGSTG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A++ L + Sbjct: 474 ALKAMG----------------------------------------ALEMGLSEDELPDI 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 +WR +Q +++ W D+ + V+ + + RL + I LPS R Sbjct: 494 VSSWRDANQQIVKFWWDVDKAVMAAVKN------HKTTRLGRLAFFWQAGMLFITLPSGR 547 Query: 567 RLVYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 L Y K + T + R +YG K ENIVQA SRDILC MK Sbjct: 548 NLAYVKPKVGMNRFGGECITYEGVGGTKKWERLESYGPKFVENIVQATSRDILCNSMKML 607 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 D+ + +HDE+V E P S+ TLC M + P+WA GL L+A+GY Y+K Sbjct: 608 --RHCDVCMHIHDELVIEA--DPRVSLDTLCEQMGRVPAWADGLVLRADGYVCDFYKK 661 >gi|57234138|ref|YP_181815.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224586|gb|AAW39643.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 662 Score = 710 bits (1832), Expect = 0.0, Method: Composition-based stats. Identities = 218/724 (30%), Positives = 324/724 (44%), Gaps = 112/724 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L YA D V++ D + +P +++ Sbjct: 1 MKNISIDIETFSDIDLNKCGVYKYAESPNFEILLFGYAVDGGKVQVIDLAQGEHIPQEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98 L D+ V A N+ FER+ + L + + W C+ V Sbjct: 61 DALTDDEVTKWAFNANFERVCLSRYLSDLGVSLDPFHDNHPLSTECARFLNPEGWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN------- 151 A T GLP SLK L + KM+EGKALI F S P T+AN Sbjct: 121 WAATMGLPLSLKGVGQVLKLEDQ--KMDEGKALIKYF------SVPCAPTKANGGRTRNM 172 Query: 152 ---HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLV 206 + W+ F Y KRDVE + +RL P+ D D + +DQ INDRG R+D+DLV Sbjct: 173 PFHDPEKWETFKAYNKRDVEVEMAIQQRLTNFPVPDFVWDEYRIDQEINDRGVRLDMDLV 232 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 K E+ + R +L + +T+ + + ++ +L G++ + + + ++ Sbjct: 233 AKAIEMDTRSRTELTTAMKDITE--LDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIK 289 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + ++ R + S++ K T+ AV DGR RG FYGA+RTGRW+G + Q Sbjct: 290 --TAPSELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFMFYGANRTGRWAGRLIQ 347 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLA 382 QNLP+ + + + + + D S +R+ I +G +L V+D + Sbjct: 348 LQNLPQNHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQLYVSDFS 407 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALG 440 IEARV+AW AGE W+ K FA+G DIY + ++ F+ P++K V+ R GK+ ELALG Sbjct: 408 AIEARVIAWYAGEMWRQKVFADGGDIYCASASQMFHVPVEKHGVNGHLRQKGKIAELALG 467 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y G K M A++ L Sbjct: 468 YGGSVGALKAMG----------------------------------------AIEMGLSE 487 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + AWR + +++ W D+ V+ + S+ + R + I Sbjct: 488 DELPPLVDAWRQTNPHIVKFWWDVDRAVMEAVKHKHTTSSYGLTFSCR------SGMLFI 541 Query: 561 VLPSSRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILC 611 LPS R L Y K + T + R +YG K ENIVQA SRDILC Sbjct: 542 TLPSGRNLAYVKPKVGTNKFGGECITYEGVGATKKWERLDSYGPKFVENIVQATSRDILC 601 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 MK T +IV+ +HDE+V E P+ S+ LC M + P WA+GL L+A+GY Sbjct: 602 YAMK--TLRNCEIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWARGLQLRADGYTTP 657 Query: 672 RYRK 675 Y+K Sbjct: 658 FYKK 661 >gi|167757895|ref|ZP_02430022.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] gi|167664549|gb|EDS08679.1| hypothetical protein CLOSCI_00226 [Clostridium scindens ATCC 35704] Length = 645 Score = 709 bits (1830), Expect = 0.0, Method: Composition-based stats. Identities = 206/698 (29%), Positives = 320/698 (45%), Gaps = 80/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YA + L YA D V + D +P + + Sbjct: 4 MRTLSIDIETYSDVDLSKCGVYKYASSPAFEVLLFGYAADGGDVHVVDLACGEQIPEEAI 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D +V N++ ER+ LG + + W CT V + T GLP SL++A AL Sbjct: 64 SALSDTSVTKWTFNAMLERVCLSNFLGEWLEPEGWYCTMVWSATLGLPLSLESAGAALGL 123 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K+ EGK LI F C+ + + R H + W+ F Y RDVE ++ Sbjct: 124 EKQ--KLTEGKDLIRYFCVPCRPTKANGGRTRNRPEHAPEKWERFKAYNLRDVETEMQIQ 181 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL P+ D + + LDQ INDRG +D++LV + + + R++L + +LT+ + Sbjct: 182 KRLSNFPVPDAIWEEYHLDQEINDRGIGVDMELVRQAIAIDTRSRERLTAAMRELTE--L 239 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + ++ +L G++ + + + ++ + ++++ R + S++ K Sbjct: 240 ENPNSAQQMKQWLAD-HGLETDTLGKKAVAELVK--TAPEPLREVLSLRQQLAKSSVKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + AV +D R G QFYGA+RTGR+SG + Q QNLP+ + + + E Sbjct: 297 TAMENAVCADSRAHGMFQFYGANRTGRFSGRLIQLQNLPQNHMGDLAEARALVRSGNYEA 356 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + D S +R+ + +G+K +VAD + IEARV+AW AGE W++K F +G DI Sbjct: 357 LSVLYEDIPDTLSQLIRTAYVPQDGRKFIVADFSAIEARVIAWFAGERWRLKVFEDGGDI 416 Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F+ P++K V+ R GK+ ELALGY G K+M Sbjct: 417 YCASASQMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG-------------- 462 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A++ L + + AWR + + Q W D+ Sbjct: 463 --------------------------ALEMGLAEEELQPLVDAWRGSNPMITQFWWDVDR 496 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT--- 582 +++ + + I LPS RRL Y + G+ + Sbjct: 497 AVKDCIRQRIPTETHGL------RFDYRSAMLFINLPSGRRLAYVKPRIGENQFGGESVT 550 Query: 583 -----ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 T + R +YG K ENIVQ +RDILC M+ T IV VHDEI+ E Sbjct: 551 YMGVSGTKKWERLESYGPKFVENIVQGTARDILCYAMQ--TLKNCSIVAHVHDEIIIEAD 608 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV +C M + P WAKGL L+A+GYE + Y+K Sbjct: 609 R--RMSVAAVCEQMGRTPPWAKGLKLRADGYECEFYQK 644 >gi|323693311|ref|ZP_08107529.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] gi|323502794|gb|EGB18638.1| DNA-dependent DNA polymerase, family A [Clostridium symbiosum WAL-14673] Length = 646 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 210/702 (29%), Positives = 322/702 (45%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S +PL K GV+ Y E I L AY+ D + V++ D +P ++L Sbjct: 1 MKTLSIDIETYSDEPLQKTGVYRYVESPNFEILLFAYSVDSQSVQVIDLACGEQIPKEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L +ETV+ A N+ FERI + LG + S+ W C+ + A T GLP SL+ Sbjct: 61 LALENETVIKWAFNANFERICLSRFLGYPTGEYLDSESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEAT 170 L + K+ EGK LI FC+ + + W +F +Y RDVE Sbjct: 121 VLGLEKQ--KLSEGKDLIKYFCQPCAPTKTNGQRTRNRPFHAPDKWAMFKKYNIRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +RL P+ D + +DQ INDRG R+D++LV E+ + R +L E + ++T Sbjct: 179 MGIQQRLAKFPVPAQVWDEYHMDQEINDRGVRLDMELVAAAIEMDTRSRTELTETMKEIT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G++ + + + +L + + ++ R + S+ Sbjct: 239 E--LENPNSVQQMKAWLSD-NGLETDTLGKKAVTELLKSA--SPKLSQVLTLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + + V +DGR RG QFYGA+RTGR+SG Q QNLP+ + +++ Sbjct: 294 VRKYQAIEKTVCADGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLAEARSLVRSG 353 Query: 349 RGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 E + D S +R+ I G + +VAD + IEARV+AW AGE W+ + FA Sbjct: 354 NFEAVKLLYEDVPDTLSQLIRTAFIPREGTQFLVADFSAIEARVIAWFAGEKWRQEVFAK 413 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K ++ R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ L + AWR + +++ W Sbjct: 464 ------------------------------ALDMGLTEEELPPLVDAWRQSNPNIVKFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 ++ V+ + S+ + R + I LPS R+L Y K + Sbjct: 494 NVDHAVMEAVKFKHTTSSYGLTFSCR------SGMLFITLPSGRKLAYVKPKLGTNKFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQA +RDILC MK T IV+ +HDE+V Sbjct: 548 QCITYEGIGGTKKWERLDSYGPKFVENIVQATARDILCYAMK--TLRCCSIVMHIHDEVV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 606 IEA--DPRMSLEAVCEQMGRTPPWAKGLLLRADGYATPFYKK 645 >gi|331083931|ref|ZP_08333040.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403356|gb|EGG82916.1| hypothetical protein HMPREF0992_01964 [Lachnospiraceae bacterium 6_1_63FAA] Length = 646 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 208/702 (29%), Positives = 311/702 (44%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D VK+ D +P ++ Sbjct: 1 MKNLEIDIETYSSANLSKSGVYRYVESPDFEIILFGYSIDGGEVKVVDLACGETIPKEVY 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACL 114 L D++V A N+ FERI K LG + W C+ V + GLP SL+ + Sbjct: 61 DALEDDSVTKWAFNAQFERICLSKFLGYKQGTYLEPDSWKCSMVWSAYMGLPLSLEGVGV 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K+ EGK LI FC ++ + + W+ F Y RDVEA Sbjct: 121 VLGLEKQ--KLTEGKELIKYFCTPCNPTKVNGGRMRNLPHHDTEKWERFKAYNIRDVEAE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ RL P+ D D + LDQ INDRG ++D+D V K E+ R+ L + LT Sbjct: 179 MQIQSRLQKFPVPDFVWDEYHLDQEINDRGIKVDMDFVEKCLEIDNVSRESLMTKMQVLT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L GI+ + + + +++ + +++ R + S+ Sbjct: 239 --SLTNPNSVVQMKGWLSD-NGIETETLGKKAVAALID--EVPDEMSEILALRQKLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + +V DGR+RG QFYGA+RTGR++G + Q QNLP+ + + + Sbjct: 294 VRKYQAMQNSVCEDGRVRGMFQFYGANRTGRFAGRLVQLQNLPQNHMEDLAEARGLVRSG 353 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +++ D S +R+ I + + +VAD + IEARV+AW AGE W+ FA Sbjct: 354 DYDSLDLLYDDIPDTLSQLIRTAFIPTVNESFIVADFSAIEARVIAWFAGESWRADVFAK 413 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K V+ R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L + AWR + +++ W Sbjct: 464 ------------------------------ALEMGLAEEELPELVSAWRCSNPNIVRFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ ++ S + V R + I LPS R L Y + Sbjct: 494 DVDSAVKKAIKSKTSTATHGVHFSCR------SGMLFITLPSGRVLSYVKPCMGENKFGG 547 Query: 583 A---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQA SRDIL MK T IV VHDEI+ Sbjct: 548 ESVTYEGVGSTKKWERLESYGPKFVENIVQATSRDILMYAMK--TLRCCSIVAHVHDEII 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P S+ +C M + P WA+GL L+A+GYE + Y+K Sbjct: 606 IEA--DPRMSLDAICEQMGRTPPWAEGLLLRADGYECQFYKK 645 >gi|300764694|ref|ZP_07074685.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] gi|300514580|gb|EFK41636.1| hypothetical protein LMHG_11074 [Listeria monocytogenes FSL N1-017] Length = 645 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 323/700 (46%), Gaps = 81/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ Y+E I L AY+ D PV++ D +P+++L Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L DETV+ A N+ FER+ + LG+D + + W CT V T GLP SL L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 + K+ EGK LI FC + + +H W F Y RDVE Sbjct: 121 GLDKQ--KLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ D + LDQ INDRG ID D V +L + L++ + +LT Sbjct: 179 IQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + +R +L G++ + + + +L L K +++ R + S++ Sbjct: 238 -LENPNSVLQMRGWLLD-HGLETESLGKKAVAELLEQPIDENL-KQVLVLRQQLAKSSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + SD R RG QFYGA+RTGR++G Q QNLP+ S+ +++ + Sbjct: 295 KYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLSEARSLVKQSNF 354 Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E + + + S+ +R+ + G K +V+D + IEARV+AW++GE W+ + F NG Sbjct: 355 EMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGG 414 Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ F P++K V+ R GK+ ELALGY G K M Sbjct: 415 DIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMD------------ 462 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ L + + +WR + + +LW + Sbjct: 463 ----------------------------ALEMGLTEDELQPLVNSWRDSNINITELWWAV 494 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA- 583 + V+E RR + + + I L S R+LVY K + Sbjct: 495 DKAVKTCVKE------RRSTSTHGIKFEYKSGFLFIQLLSGRKLVYVKPKIGENKFGGEA 548 Query: 584 --------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQAI+RDILC M+N K Y IV VHDE++ E Sbjct: 549 VTYEGVGATKKWERLESYGPKFVENIVQAIARDILCFAMENLRK--YRIVGHVHDEVIIE 606 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P V +C LM++ P WA+GL L A+GYE + Y+K Sbjct: 607 VPMESK--VEDICQLMSQTPKWAEGLLLNADGYECEFYQK 644 >gi|256617076|ref|ZP_05473922.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|257088361|ref|ZP_05582722.1| DNA polymerase I [Enterococcus faecalis D6] gi|256596603|gb|EEU15779.1| DNA polymerase I [Enterococcus faecalis ATCC 4200] gi|256996391|gb|EEU83693.1| DNA polymerase I [Enterococcus faecalis D6] Length = 645 Score = 708 bits (1827), Expect = 0.0, Method: Composition-based stats. Identities = 207/700 (29%), Positives = 324/700 (46%), Gaps = 81/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIE+ S + K G + Y+E I L AY+ D +PV++ D + +P D++ Sbjct: 1 MKHLSIDIESFSSADISKCGAYKYSESSDFEILLFAYSVDGQPVEVVDLAQGETIPEDVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L DETV+ A N+ FER+ + LG++ + + W CT V A T GLP SL L Sbjct: 61 KSLSDETVIKHAFNANFERVCLSRFLGLNGFLNPRGWHCTMVWAATLGLPLSLAGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K+ EGK L+ FC ++ + + W+ F Y RDVE Sbjct: 121 GLDKQ--KLSEGKDLVRYFCMPCNATKVNQGRTRNLPRHSLDKWRDFVAYNIRDVEVEVA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P++ + + LDQ INDRG ID+ L L + +++E + KLT Sbjct: 179 IQQKLSNFPVTQEIWEEYWLDQEINDRGIEIDMILADSAVNLDEVSKNEINEQLKKLTG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + +R +L G+++ + + +K ++ +N +L K+++L R + S++ Sbjct: 238 -LENPNSVLQMRSWLS-QHGLEVESLGKAAVKELIEQTNDDKL-KEVLLLRQQLAKSSVR 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + D R RG QFYGA+RTGR++G Q QNLP+ S+ + + Sbjct: 295 KYQAMQNYACLDNRARGLFQFYGANRTGRFAGRGIQLQNLPQNHMSDLAEARELVRNGEY 354 Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E + + + S+ +R+ I G K +V+D + IEARV+AW+AGE W+ + F NG Sbjct: 355 ELLALLYDNVPEVLSELIRTAFIPKPGMKFIVSDFSAIEARVIAWLAGEKWRKEVFRNGG 414 Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ F P++K V+ R GK+ ELALGY G M Sbjct: 415 DIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAMG------------ 462 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A+ L + + +WR + + +LW D+ Sbjct: 463 ----------------------------ALNMGLTEDELQPLVASWRETNPAITKLWWDI 494 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT-- 582 V G + + I L S RRL Y + + Sbjct: 495 DSAAKGCVSVGAKTETHGIT------FEYKSGFMFIQLLSGRRLAYVKPRIGQNRFGGAA 548 Query: 583 -------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQA++RDILC M+N Y IV VHDE++ E Sbjct: 549 VTYEGVGTTKKWERLESYGPKFVENIVQAMARDILCFAMQNL--KDYRIVGHVHDEVIIE 606 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P +V + S+M++ P+WAKGL L A+GYE Y+K Sbjct: 607 VPKE--VTVEEVNSIMSQTPNWAKGLLLNADGYECDFYQK 644 >gi|42779458|ref|NP_976705.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42735374|gb|AAS39313.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 644 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 203/700 (29%), Positives = 314/700 (44%), Gaps = 82/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ + IDIET S L K GV+ YAE I L Y+ D V++ D +P +++ Sbjct: 1 MNSISIDIETFSGANLQKSGVYRYAESDDFEILLFGYSVDGGEVQVVDLACGEEIPDEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D++V A N++FER+ K L + + W C+ + + GLP SL+ L Sbjct: 61 NALLDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMIWSAYMGLPLSLEGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K+ EGK LI FC + + + W+ F Y RDVEA Sbjct: 121 GLEKQ--KLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKAYNLRDVEAEMS 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +R + + + + LDQ INDRG ID+ V + + R+KL + +T+ Sbjct: 179 IQQRFSKFLVPENIWEEYHLDQEINDRGIAIDMTFVKQAVVMDEHSREKLMALMQDITN- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + ++ +L G++ + + + +L + ++ R + S++ Sbjct: 238 -LENPNSVQQMKDWLAD-NGLETDTLGKKAVAEMLK--TAPEPLGTVLELRQQLAKSSVK 293 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + AV +DGR RG QFYGA+RTGR+SG + Q QNLP+ + + + Sbjct: 294 KYTAMENAVCNDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 353 Query: 351 ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + + S+ +R+ I G K +VAD + IEARV+AW+AGE W+I F NG Sbjct: 354 DALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRIDVFQNGG 413 Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ FN P++K V+ R GK+ ELALGY G K+M Sbjct: 414 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG------------ 461 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ + + + AWR + + +LW D+ Sbjct: 462 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 493 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581 V++ + + + I LPS RRL Y + + Sbjct: 494 DRAVKTCVKQKTPTETHGIKFI------YQSGMLFIALPSGRRLAYVKPRMGENMFGGES 547 Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQAISRDILC M+ T IV VHDEI+ E Sbjct: 548 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIIIE 605 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ +C M K P+WA GL L A+GYE + Y+K Sbjct: 606 ADMGT--SLSAICEQMAKMPTWANGLLLSADGYECQFYQK 643 >gi|167630957|ref|YP_001681456.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] gi|167593697|gb|ABZ85445.1| DNA polymerase i, putative [Heliobacterium modesticaldum Ice1] Length = 646 Score = 706 bits (1821), Expect = 0.0, Method: Composition-based stats. Identities = 214/702 (30%), Positives = 318/702 (45%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D V++ D A+PS ++ Sbjct: 1 MRALNIDIETYSSVDLAKSGVYRYTESPDFAILLFGYSVDGGEVQVVDLMCSEAIPSKVV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+ V A N+ FERI K LG+ + W CT V + GLP SL+ Sbjct: 61 DALTDKDVTKWAFNAQFERICLSKWLGLPTGQYLDPMSWRCTMVWSAYMGLPLSLEGTGA 120 Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170 L + K+ EGK LI F CK ++ + H W F Y RDVE Sbjct: 121 VLGLEKQ--KLTEGKDLIRHFSVPCKPTVSNEGRTRNLPIHAPDKWAAFKAYNLRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++L P+ +G + LDQ INDRG +D+DLV + E+ + R KL I +LT Sbjct: 179 MAIQQKLAKFPVPEGVWGEYHLDQEINDRGVALDMDLVRQAIEMDNRSRSKLTGMIRELT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G++ + + + +L ++ ++ R + + S+ Sbjct: 239 E--LENPNSVVQMKQWLSD-HGLETDTLGKKAVVELLK--TASEPLGKVLELRQSLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + V +DGR RG QFYGA+RTGRW+G + Q QNLP+ + +++ Sbjct: 294 VKKYTAMENVVCTDGRARGMFQFYGANRTGRWAGRLIQLQNLPQNHMPDLEQARSLVRSG 353 Query: 349 RGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + + S+ +R+ + G K +VAD + IEARV+AW+AGE W+ + F + Sbjct: 354 NFAALEMLYDSVPEVLSELIRTAFVPKKGCKFIVADFSAIEARVIAWLAGEKWRQEVFES 413 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F+ P++K V+ R GK+ ELALGY G K M + ++ Sbjct: 414 GGDIYCASASQMFHVPVEKNGVNGHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 473 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 Q + AWR+ + +++LW Sbjct: 474 LQ----------------------------------------PLVSAWRSSNPKIVRLWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN- 581 D+ V+E R + I LPS RRL Y + + Sbjct: 494 DIDRAAMKAVRE------RTTTETHGIRFSYQSGMFFITLPSGRRLAYVKPRIGQNRFGS 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + R +YG KLTENIVQA SRDILC M+N IV+ VHDEIV Sbjct: 548 DCITYEGVGGAKKWERIESYGPKLTENIVQATSRDILCYAMRNL--RHCSIVMHVHDEIV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E S +C M + P WAKGL L+A+GYE Y+K Sbjct: 606 IEADR--RMSTEAVCKQMGQTPPWAKGLLLRADGYETDFYKK 645 >gi|291556513|emb|CBL33630.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Eubacterium siraeum V10Sc8a] Length = 660 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 208/716 (29%), Positives = 318/716 (44%), Gaps = 98/716 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D PV++ D +P +++ Sbjct: 1 MKTLSIDIETYSSVDLAKCGVYKYTEATDFDILLFGYSTDGGPVQVVDLACGETIPQEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100 L ++ V A N+ FERI + L G + W CT + + Sbjct: 61 AALTNDNVTKWAFNAQFERICLSRWLRDHGGFDNACYSIPEDTVGNYLDPASWKCTMIWS 120 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAW 156 GLP SL+ L + K+ EGK LI FC+ +S N W Sbjct: 121 AYMGLPLSLEGVGAVLGLGKQ--KLTEGKELIKYFCQPCAPTKANSGRTRNLPENAPDKW 178 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 F Y RDVE + ++L P+ D + + LDQ INDRG +D+DLV + ++ Sbjct: 179 ASFKRYNARDVEVEMSIQEKLAKFPVPDVVWEQYHLDQEINDRGVALDMDLVRQAIDMDT 238 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + R +L + KLT + + ++ +L G+++ + + + +L Sbjct: 239 RSRAELTAAMKKLT--ALDNPNSVQQMKQWLSD-NGLNVDSLGKKEVAEMLK--TAPAEL 293 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + ++L R + S++ K + +AV +DGR RG QFYGA+RTGRW+G + Q QNLP+ Sbjct: 294 QQVLLLRQQLAKSSVKKYQAMEKAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNH 353 Query: 335 RSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 + + + + + D S +R+ + G K +V+D + IEARVLA Sbjct: 354 LPDLAEARALVRCGDFDGVELLYEDVPDTLSQLIRTAFVPRPGYKFIVSDFSAIEARVLA 413 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448 W AGE W+ + F G DIY + ++ F P++K V+ R GK+ ELALGY G Sbjct: 414 WFAGETWRQEVFEKGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 473 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K M A++ L + + Sbjct: 474 KAMG----------------------------------------ALEMGLSEGELQPLVT 493 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 AWR +Q +++ W D+ V+ + + + + I LPS RRL Sbjct: 494 AWRNSNQNIVKFWWDIDRAAMNAVK------YHMDSEICGIKFSYKSGMLFITLPSGRRL 547 Query: 569 VYSDVKGD--------CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K +Y T + R TYG KL ENIVQA SRDILC M+ T Sbjct: 548 SYVKPKLGTNQFGGECITYEGIGGTKKWERLDTYGPKLVENIVQATSRDILCYAMR--TL 605 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + I + +HDE+V E + ++ ++C M + P+WA GL L+A+GYE Y+K Sbjct: 606 SHCFITMHIHDELVIEA--SLGVNLKSICEQMGRTPTWANGLKLRADGYETMFYKK 659 >gi|167761124|ref|ZP_02433251.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] gi|167661243|gb|EDS05373.1| hypothetical protein CLOSCI_03522 [Clostridium scindens ATCC 35704] Length = 662 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 211/718 (29%), Positives = 317/718 (44%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D VK+ D + +P +L+ Sbjct: 1 MQTLSIDIETYSSINLSKCGVYKYAEAPDFEILLFGYSVDGCDVKVIDLAQGEHLPQELI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKT---LGIDIPS-----------------KRWICTSV 98 L D++++ A N+ FER+ + LGI + + W C+ V Sbjct: 61 DALTDDSIIKWAFNANFERVCLSRYLRDLGISLDPFHDSHHLSQECSHFLNSESWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA-NHVQ 154 A T GLP SL+ L + K+ EGK LI F C + + R + + Sbjct: 121 WAATMGLPLSLEGVGSVLGLEKQ--KLTEGKELIKYFSVPCAPTKANGGRTRNRPFHDPE 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W F Y RDVE + RL P+ + + +DQ INDRG RID+DLV + E+ Sbjct: 179 KWDAFKRYNIRDVETEMGIKDRLSKFPVPEAVWYEYHIDQEINDRGVRIDMDLVTEAIEM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + R +L I K+TD + + ++ +L G++ + + + ++ Sbjct: 239 DTRSRTELTSAIKKMTD--LENPNSVQQMKQWLSN-NGLETDSLGKKVVAELIK--TAPP 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 ++++ R + S++ K T+ AV DGR RG FYGA+RTGRW+G + Q QNLP+ Sbjct: 294 ELQNVLELRQQLAKSSVRKYQTMERAVCDDGRARGMFAFYGANRTGRWAGRLIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + + + D S +R+ I + + V+D + IEARV Sbjct: 354 NHLEDLADARALVKSGDFDAVKLLYEDVPDTLSQLIRTAFIPKSDTQFYVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446 +AW AGE W+ K FA G DIY + ++ F+ P++K ++ R GK+ ELALGY G Sbjct: 414 IAWYAGETWRQKVFAEGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSIG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A++ L + Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 AWR + +++ W D+ V+ + + L + I LPS R Sbjct: 494 VDAWRQTNPNIVKFWWDVDRAVMEAVKH------KHTTSCYGLTFSCRSGMLFITLPSGR 547 Query: 567 RLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 L Y K + T + R +YG K ENIVQA SRDILC MK Sbjct: 548 NLAYVKPKIGTNKFGGECITYEGVGSTKKWERLDSYGPKFVENIVQATSRDILCYAMK-- 605 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T +IV+ +HDE+V E P S+ LC M + P WA+GL L+A+GY Y+K Sbjct: 606 TLRNCEIVMHIHDELVIEA--DPCMSLDVLCEQMGRTPPWARGLKLRADGYTCPFYKK 661 >gi|295114921|emb|CBL35768.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [butyrate-producing bacterium SM4/1] Length = 646 Score = 704 bits (1817), Expect = 0.0, Method: Composition-based stats. Identities = 210/702 (29%), Positives = 313/702 (44%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET S QPL K GV+ Y E I L AY+ D PV+ D +PS++L Sbjct: 1 MQTLSIDLETYSDQPLAKTGVYRYVESPDFEILLFAYSVDGAPVQQIDLACGEKIPSEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+ V A N+ FERI + LG + W C+ V A GLP SL+ A Sbjct: 61 CALEDDKVTKWAFNANFERICLSRFLGYPTGDYLEPDSWKCSMVWAAYMGLPLSLEGAGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K+ EGK LI FC+ + + W F +Y RDVE Sbjct: 121 VLGLEKQ--KLAEGKDLIKYFCQPCAPTKSNGQRTRNLPKHSPDKWLAFKKYNIRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + RL P+ D + + LDQ INDRG +D++LV + ++ + R +L + + +LT Sbjct: 179 MSIQARLLKYPVPDSVWEEYHLDQEINDRGVGLDMELVRQAIQMDGRSRSELTQAMKELT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + ++ +L G++ + + + +L Q + ++ R + S+ Sbjct: 239 --SLDNPNSVQQMKQWLAD-NGVETDTLGKKAVAELLK--TAPQQLQKVLTLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV +DGR RG QFYGA+RTGRW+G + Q QNLP+ + + + Sbjct: 294 VKKYQAMETAVCADGRARGMFQFYGANRTGRWAGRIIQMQNLPQNHLDDLTEARGLVRAG 353 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + + D S +R+ + +K +VAD + IEARV+AW+A E W+ FA Sbjct: 354 GFDALEMLYEDVPDTLSQLIRTAFVPQGNRKFIVADFSAIEARVIAWLADEKWRQDVFAE 413 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G+DIY + ++ F P++K V+ R GK+ ELALGY G K M Sbjct: 414 GKDIYCASASQMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L + AWR + ++Q W Sbjct: 464 ------------------------------ALEMGLSEDELPALVSAWRQANPKIVQFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLN 581 + V + + + + I LPS R L Y K G+ + Sbjct: 494 AVDRAVMDAVTRKTTTKTHGI------IFSARNGMLFITLPSGRSLSYVKPKIGENRFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQA SRDILC MK T IV+ +HDE+V Sbjct: 548 DCITYEGVGGTKKWERIDSYGPKFVENIVQATSRDILCYAMK--TLRCCSIVMHIHDEVV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E S+ +C M + P WA GL L+A+GYE Y+K Sbjct: 606 IEADR--RMSLQAVCDQMGRTPPWANGLQLRADGYETDFYKK 645 >gi|220930221|ref|YP_002507130.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000549|gb|ACL77150.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 647 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 203/700 (29%), Positives = 316/700 (45%), Gaps = 82/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 ++ L +D+ET S L K GV+ YAE I L Y+ D V++ D +P +++ Sbjct: 4 INSLSLDLETYSSVNLQKSGVYRYAESDDFEILLFGYSVDSGEVQVVDLAGGEEIPDEII 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGI--DIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D++V A N++FER+ K L + + W C+ V + GLP SL+ L Sbjct: 64 NALMDDSVTKWAFNAMFERVCLSKWLNLTEYLDPASWKCSMVWSAYMGLPLSLEGVGAVL 123 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + K+ EGK LI FC + + + W+ F Y RDVE+ Sbjct: 124 GLEKQ--KLTEGKDLIKYFCTPCSPTKSNGGRVRNLPEHDMDKWERFKVYNIRDVESEML 181 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +RL + + + LDQ INDRG ID+ V + E+ R+KL + +T+ Sbjct: 182 IQQRLSKFQVPENIWKEYHLDQVINDRGIAIDMTFVKQAVEMDEHSREKLIALMQDITN- 240 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + ++ +L G++ + + + +L + ++ R + S++ Sbjct: 241 -LENPNSVQQMKDWLAD-NGLETDSLGKKVVAEMLK--TAPEPLGTVLELRQQLAKSSVK 296 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + AV SDGR RG QFYGA+RTGR+SG + Q QNLP+ + + + Sbjct: 297 KYTAMENAVCSDGRARGMFQFYGANRTGRFSGRLIQLQNLPQNHMPDLEQARALVRSGNF 356 Query: 351 ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + + S+ +R+ I G K +VAD + IEARV+AW+AGE W++ F G Sbjct: 357 DALTLLYDSIPEVLSELIRTAFIPREGMKFIVADFSAIEARVIAWLAGEKWRLNVFQKGG 416 Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + ++ FN P++K V+ R GK+ ELALGY G K+M Sbjct: 417 DIYCASASQMFNVPVEKHGVNGHLRQKGKIAELALGYGGAVGALKSMG------------ 464 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A++ + + + AWR + + +LW D+ Sbjct: 465 ----------------------------ALEMGIEEEELQPLVTAWRQSNPNITKLWWDV 496 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN--- 581 V++ + + + + IVLPS RRL Y + + Sbjct: 497 DRAVKTCVKQKTPTATHGIKFI------YQSGMLFIVLPSGRRLAYVKPRMGENMFGSES 550 Query: 582 ------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 T + R +YG K ENIVQAISRDILC M+ T IV VHDEI+ E Sbjct: 551 VTYEGVGGTKKWERIESYGPKFVENIVQAISRDILCHAMQ--TLKNCSIVAHVHDEIIIE 608 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ +C M K P+WA GL L A+GYE + Y+K Sbjct: 609 ADMG--MSLSAICEQMAKTPTWANGLLLSADGYECQFYQK 646 >gi|212712317|ref|ZP_03320445.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] gi|212685063|gb|EEB44591.1| hypothetical protein PROVALCAL_03405 [Providencia alcalifaciens DSM 30120] Length = 685 Score = 704 bits (1816), Expect = 0.0, Method: Composition-based stats. Identities = 272/692 (39%), Positives = 376/692 (54%), Gaps = 25/692 (3%) Query: 1 MS-KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 M L++D+ET S +P+ K G +YAE I L A+A ++ V++WD T++S +P++L Q Sbjct: 1 MKNTLWLDLETFSEKPI-KYGTHSYAETVEIMLFAWALNNNLVQVWDVTDKSPIPTELKQ 59 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D + AHNS F+R + + GI I RW T V A +GLP +L C L Sbjct: 60 ALSDPNTIIYAHNSHFDRTMLNHS-GIKIDVSRWRDTMVQALAHGLPGALGALCEVLGVP 118 Query: 120 EHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL Sbjct: 119 LDKAKDKEGKALIQLFCKPRPKNSALRRATSKTHPEEWKRFVAYAGLDIEAMREVHKRLP 178 Query: 179 PLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + D E + W DQ INDRG +D+ L E + E+K+L + LTD ++++ Sbjct: 179 SWNYCDNELEHWHRDQRINDRGVYMDIQLATAAIEAVEIEQKRLAKLTQDLTDNEVQAAT 238 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL ++ G+DL DM + TL+ ++ +I ++L+ RL SS ++ K L Sbjct: 239 QRDALLQHISAAFGVDLPDMQKSTLERRINDPDIPLPLRELLAIRLQSSTTSTSKYKALM 298 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353 VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR + + + I+AL G Sbjct: 299 NGVSSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPTLDQNTIDKGIEALKAGCADLIY 358 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDI 408 D + L S +R CI+A GKKLVV+DL+ IE R+LAW+AGE WKI AF+ G D+ Sbjct: 359 DDIMQLTSSTLRGCIMAPEGKKLVVSDLSNIEGRMLAWLAGEAWKITAFSEFDKGIGADL 418 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y YA+AFN + V K R IGKVMEL LGY GG F T A LDL + ++ Sbjct: 419 YKLAYARAFNISPEDVDKHMRQIGKVMELGLGYGGGVAAFLTFALTYSLDLDELAEAALP 478 Query: 469 TSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + A S + + + + + + T C+ +K+ WR H + W +L + Sbjct: 479 NIPPKVKHDALSWYQKSVETKKTYGLSETVFIT-CDSLKRMWRNAHPETVSFWYELEDTV 537 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNT--A 583 + G R V RR K + IVLPS R + Y + G SY+ Sbjct: 538 RHAISSPGITFPCRKLKV-----RRDKAWLRIVLPSGRAVCYPSPRNDNGQISYMGVNPY 592 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFS 643 + + R +TYGGKL EN+ QA +RD+L M +GYDIVLTVHDE+++E PD P F+ Sbjct: 593 SRKWQRLKTYGGKLVENVTQAAARDVLAGNMPTIEDHGYDIVLTVHDEVLTEAPDNPAFN 652 Query: 644 VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L L+ NP WA LPL A G+EA YRK Sbjct: 653 HEHLSELLATNPEWALDLPLSAGGFEAYHYRK 684 >gi|284048474|ref|YP_003398813.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952695|gb|ADB47498.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 662 Score = 703 bits (1814), Expect = 0.0, Method: Composition-based stats. Identities = 204/718 (28%), Positives = 314/718 (43%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L YA D PV++ D + ++P ++L Sbjct: 1 MKTLSIDIETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGPVQVVDLAQGESIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL--------------------GIDIPSKRWICTSV 98 L D+TV A N+ FER+ + L + W C+ V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRHLTDLGRSLDPFHDQHPLSKKCARFLNPAGWKCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQ 154 + GLP SL+ LN KM+EG+ LI FC ++ + + Sbjct: 121 WSAYLGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCIPCKETKANGGRTRNLPQHALD 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W LF Y KRDVE + +RL P+ + + LDQ INDRG IDL+L + L Sbjct: 179 KWNLFKSYNKRDVEVEMAIQQRLQKYPVPKQVWEEYHLDQEINDRGIAIDLELAKQAVAL 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 A+ R+ L + + T + + + +L G+ + + ++ +L + Sbjct: 239 DAKSRESLMAALKERTG--LENPNSVIQMLDWL-EQHGLKTDSLGKKNVQELLK--TAQE 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++L R + S++ K + DGR RG QFYGA+RTGR++G Q QNLP+ Sbjct: 294 PLRSVLLLRQKLAKSSVKKYQAMEMTACKDGRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGETIADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + E + + S +R+ + G K VV+D + IEARV Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446 ++W+AGE WK + FA G+DIY +T ++ F P+ K ++ R GK+ ELA GY G Sbjct: 414 ISWLAGERWKSEDFAAGKDIYCSTASQMFGVPVVKHGINGNLRQKGKIAELACGYGGSVG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A+ + + Sbjct: 474 ALKAMG----------------------------------------ALDMGIPEEELGNL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 ++WR+ + ++ W + +++ + + + + I LPS R Sbjct: 494 VQSWRSANPHIVDFWWQVDGAVKTTIKQRIPVWVNNIRFFCQ------SGMLFIELPSGR 547 Query: 567 RLVYSDVK-GDCSYLN--------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RL Y + G+ + AT + + +YG K ENIVQ ISRDILC M+ Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWEQLESYGPKFVENIVQGISRDILCYAMQ-- 605 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T IV VHDE++ E P SV +C M + P WA+GL L+A+GY + Y+K Sbjct: 606 TLRCCAIVGHVHDELIIECPKDT--SVDAICEEMGRTPPWAEGLVLRADGYACEFYQK 661 >gi|323159211|gb|EFZ45201.1| DNA-directed DNA polymerase [Escherichia coli E128010] Length = 687 Score = 703 bits (1813), Expect = 0.0, Method: Composition-based stats. Identities = 260/689 (37%), Positives = 374/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL ENI QA +RDIL M GY IVLTVHDE+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|57233569|ref|YP_180826.1| family A DNA-dependent DNA polymerase [Dehalococcoides ethenogenes 195] gi|57224017|gb|AAW39074.1| DNA-dependent DNA polymerase, family A [Dehalococcoides ethenogenes 195] Length = 646 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 215/702 (30%), Positives = 323/702 (46%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y E I L Y+ D V++ D T +PSD++ Sbjct: 1 MKSLSIDIETYSSANLAKSGVYRYVESPDFEILLFGYSVDGGEVQVVDLTSGEKLPSDVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L DETV+ A N+ FERI + LG+ I W C+ V A T GLP SL+ Sbjct: 61 TALTDETVIKWAFNANFERICLSRFLGLPTGKYINPASWKCSMVWAATMGLPLSLEGVGS 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----VQAWQLFGEYCKRDVEAT 170 L + K+ EGK LI F + + NH W F +Y RD+E Sbjct: 121 VLKLDKQ--KLTEGKDLIKYFSQPCAPTKSNGQRTRNHLYHAPDKWSAFKKYNIRDIETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++L P+ D D + LDQ INDRG +D+ LV + + + R +L + LT Sbjct: 179 MSIQEKLTRFPVQDSIWDEYHLDQEINDRGVALDMTLVQEAIAMDGRSRSELTTAMKHLT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G++ + + + +L + + D++ R + S+ Sbjct: 239 E--LDNPNSVQQMKQWLAD-NGMETDTLGKKIVAELLKTAPL--DLADVLSLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV +DGR RG QF+GA+RTGRW+G + Q QNLP+ + + + Sbjct: 294 VRKYQAMENAVCTDGRARGMFQFFGANRTGRWAGRLIQMQNLPQNHLEDLAEARALVRFG 353 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + + D S +R+ + G +L+V+D + IEARV+AW+AGE+W+ FA Sbjct: 354 DFDALEMLYEDVPDTLSQLIRTAFVPKAGARLIVSDFSAIEARVIAWMAGEEWRQDVFAK 413 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K ++ R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ L + AWR + +++ W Sbjct: 464 ------------------------------ALDMGLEEDELPQLVDAWRQANPCIVKFWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLN 581 D+ + V+ +R + + + I LPS RRL Y + G+ + Sbjct: 494 DVDKAAMEAVR------YKRTNSTHGITFSCQSGMLFITLPSGRRLAYVKPRIGENKFGG 547 Query: 582 T--------ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 AT + R +YG K ENIVQA +RDILC M+ T IV+ VHDEIV Sbjct: 548 QCITYEGVGATKKWERLDSYGPKFVENIVQATARDILCNAMQ--TLQHCSIVMHVHDEIV 605 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P S+ +C M + PSWAKGL L+A+GYE Y+K Sbjct: 606 IEA--DPRMSLKAVCEQMGRTPSWAKGLLLRADGYETDFYKK 645 >gi|291283829|ref|YP_003500647.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] gi|290763702|gb|ADD57663.1| DNA polymerase I - 3''''-5'''' exonuclease and polymerase domains [Escherichia coli O55:H7 str. CB9615] Length = 687 Score = 702 bits (1812), Expect = 0.0, Method: Composition-based stats. Identities = 262/689 (38%), Positives = 372/689 (53%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKNKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPHLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCAGLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + F + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYNESVKHKSTFGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPIIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|218555134|ref|YP_002388047.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] gi|218361902|emb|CAQ99502.1| putative DNA polymerase from bacteriophage origin [Escherichia coli IAI1] Length = 687 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 260/689 (37%), Positives = 374/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGVGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL ENI QA +RDIL M GY IVLTVHDE+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|191173996|ref|ZP_03035513.1| DNA polymerase [Escherichia coli F11] gi|190905687|gb|EDV65309.1| DNA polymerase [Escherichia coli F11] gi|324014350|gb|EGB83569.1| hypothetical protein HMPREF9533_01582 [Escherichia coli MS 60-1] Length = 687 Score = 701 bits (1810), Expect = 0.0, Method: Composition-based stats. Identities = 262/689 (38%), Positives = 373/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +DEPV +WD T +P L + + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDEPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + F + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYNESVKRKSTFGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|293401134|ref|ZP_06645278.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305260|gb|EFE46505.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 646 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 207/703 (29%), Positives = 317/703 (45%), Gaps = 86/703 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LPK GV+ Y E I L AY+ D +PV++ D +P +++ Sbjct: 1 MKTLSIDIETYSDVQLPKTGVYRYCESDNFEILLFAYSIDSQPVQVVDLACGETIPEEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+TV+ A N+ FERI + LG + + W C+ + A T GLP SL+ Sbjct: 61 AALEDDTVIKWAFNAAFERICLSRFLGYPTGTYLSPESWRCSMIWAATMGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARFCKGS---IDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170 L + K+ EGK LI FC+ + R H W+ F Y RDVE Sbjct: 121 VLGLEKQ--KLTEGKDLIKYFCQPCAATKANGGRTRNRPFHAPDKWEAFKRYNIRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +L P+ + + + +DQ INDRG R+D++LV + + + R++L I +T Sbjct: 179 MGIQHKLRKFPVPNEVWEEYHIDQEINDRGVRLDMELVSQAIAMDTRSREELTAAIKDMT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L GI+ + + + +L + D++ R + S+ Sbjct: 239 E--LENPNSVQQMKQWLSD-NGIETDSLDKKAVAELLK--DAPDNLADVLTLRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + + V SDGR RG QFYGA+RTGR+SG Q QNLP+ + +++ Sbjct: 294 VRKYQAMEKTVCSDGRARGMFQFYGANRTGRFSGRNIQLQNLPQNHLPDLSEARSLVRSG 353 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + + D S +R+ I VAD + IEARV+AW AGE W+ + F Sbjct: 354 DFDGVELLYEDVPDTLSQLIRTAFIPRENALFYVADFSAIEARVIAWFAGESWRQQVFEK 413 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQ 461 G DIY + ++ F P++K ++ R GK+ ELALGY G K M + GL+ ++ Sbjct: 414 GGDIYCASASQMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALKAMGALDMGLNEEE 473 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 V + W QA +++ W Sbjct: 474 LPALVDA------WRQANPR-----------------------------------IVEFW 492 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 + V+ + + + + + I LPS R+L Y K + Sbjct: 493 WAVDRAVMEAVKYKHTTTDYGLTFSCK------SGMLFITLPSGRKLAYVKPKIGTNKFG 546 Query: 582 ---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 T + R +YG K ENIVQA +RDILC MK T IV+ +HDE+ Sbjct: 547 GSCITYEGVGGTKKWERLDSYGPKFVENIVQATARDILCYAMK--TLRCCSIVMHIHDEL 604 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V E P S+ +C M + P WAKGL L+A+GY Y+K Sbjct: 605 VIEA--DPKVSLDAICEQMGRTPPWAKGLLLRADGYTTPFYKK 645 >gi|317501098|ref|ZP_07959304.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] gi|316897485|gb|EFV19550.1| DNA-dependent DNA polymerase, family A [Lachnospiraceae bacterium 8_1_57FAA] Length = 662 Score = 701 bits (1809), Expect = 0.0, Method: Composition-based stats. Identities = 206/718 (28%), Positives = 311/718 (43%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ YAE I L Y+ D V + D + +P ++ Sbjct: 1 MQTLSIDIETYSDVNLSKCGVYKYAESPDFEILLFGYSADGSEVTVIDLAQGEHLPQKII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98 L D+TV+ A N+ FER+ + L + + W C+ V Sbjct: 61 DALTDDTVIKWAFNANFERVCLSRYLRDLGVSLDPFHDNHPLSTECARFLNPESWRCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH----VQ 154 A T GLP SL+ L + K+ EGK LI F + NH Sbjct: 121 WAATMGLPLSLEGVGAVLGLEKQ--KLTEGKDLIKYFSVPCAPTKANGGRTRNHPFHAPD 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W+ F +Y RDVE + RL P+ + D + +DQ INDRG R+D+DLV + E+ Sbjct: 179 KWEAFKKYNIRDVETEIGIKDRLAKFPVPEAVWDEYHIDQEINDRGVRLDMDLVKEAIEM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + R +L + +T + + ++ +L G++ + + + ++ Sbjct: 239 DTRSRSELTAAMKDMT--ALDNPNSVQQMKQWLSD-NGLETDSLGKKVVAELIK--TAPP 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++ R + S++ K T+ AV DGR RG FYG +RTGRW+G + Q QNLP+ Sbjct: 294 ELQTVLELRQQLAKSSVKKYQTMERAVCDDGRARGMFAFYGVNRTGRWAGRLIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + + + D S +R+ I +G + V+D + IEARV Sbjct: 354 NHLPDLADARALVKSGNFDAVKLLYEDVPDTLSQLIRTAFIPKDGTQFYVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446 +AW AGE W+ K F G DIY + ++ F+ P++K ++ R GK+ ELALGY G Sbjct: 414 IAWYAGETWRQKVFETGGDIYCASASQMFHVPVEKHGINGHLRQKGKIAELALGYGGSVG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A++ L + Sbjct: 474 ALKAMG----------------------------------------AIEMGLSEDELPPL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 AWR + +++ W D+ V+ + S+ + R + I LPS R Sbjct: 494 VDAWRQTNPNIVKFWWDVDRSVMEAVKYKHTTSSYGLTFSCR------SGMLFITLPSGR 547 Query: 567 RLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 L Y K + T + + +YG K ENIVQA SRDILC MK Sbjct: 548 NLAYVKPKIGTNKFGGECVTYEGIGSTKKWEQLDSYGPKFVENIVQATSRDILCYAMK-- 605 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T IV+ +HDE+V E P+ S+ LC M + P WAKGL L+A+GY Y+K Sbjct: 606 TLRCCSIVMHIHDELVIEA--DPHMSLDVLCEQMGRTPPWAKGLKLRADGYVTPFYKK 661 >gi|134299054|ref|YP_001112550.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] gi|134051754|gb|ABO49725.1| DNA-directed DNA polymerase [Desulfotomaculum reducens MI-1] Length = 650 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 219/700 (31%), Positives = 317/700 (45%), Gaps = 76/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L IDIET S L K GV+AYAE I L YA+DDEPV+L D +P ++L Sbjct: 1 MTILGIDIETYSRVDLTKSGVYAYAEAEDFEILLFGYAFDDEPVQLIDLASGEQLPDNVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D ++ A N+ FER K +P ++W CT V A T GLP L + L Sbjct: 61 NALTDPEIIKTAFNANFERTCIAKHFNRPMPPEQWRCTHVHALTLGLPGHLGDVAKVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K GKALI F CK + + H W F YCK+DV R++ Sbjct: 121 KQQ--KDTAGKALIRYFSMPCKPTKVNGQRTRNLPEHDPDRWAKFKSYCKQDVAVERDIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K L P+ + E LW LDQ IND G +D LV Q + KL KLT + Sbjct: 179 KTLERFPVIEAEHKLWCLDQRINDGGVLVDSQLVTNAIACDTQYQDKLMAKAAKLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + L+ +L G+++ +++ ++ +L + + K ++ R + +++ K Sbjct: 237 DNPKSVSQLKQWLLKTDGLEVESLNKESVPELLKQTE-SSTVKQMLELRQEMAKTSVKKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A DGR+RG LQFYGA+RTGRW+G + Q QNLPR + + + E Sbjct: 296 LAMERAKGKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPRNSIKDLDQARQLLKAGDYEM 355 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ + G + +VAD + IEARV+AW+A E W++ F I Sbjct: 356 LELLFESVPTVLSQLIRTAFVPKEGHRFIVADFSAIEARVIAWLADEKWRMDVFRTHGKI 415 Query: 409 YVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F+ PI++++K R GKV ELALGYQGG M Sbjct: 416 YEASASAMFHVPIEEITKGNPLRQKGKVSELALGYQGGPGALIAMG-------------- 461 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+K+ L + K WR +++ W D Sbjct: 462 --------------------------ALKEGLTEEELPGLVKLWRQSSPNIVKFWYDTEA 495 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577 V+E ++ + + I LPS RRL Y + Sbjct: 496 AAIKAVKEKTTVELHHGIH-----FIYESGILFIRLPSGRRLAYIKPRIQNNPRLDKPAL 550 Query: 578 SYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +Y T Q R TYGGKL ENIVQA++RD L E + GY V+ VHDE V E Sbjct: 551 TYEGQEQGTKQWGRLYTYGGKLVENIVQAVARDCLAEALLRLDVAGYKTVMHVHDESVME 610 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P S+ C +M + WA GLP++A+G+E+ Y+K Sbjct: 611 MPHG-VGSLEDACRIMEQPIPWAPGLPMRADGFESNYYKK 649 >gi|315654969|ref|ZP_07907874.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] gi|315490930|gb|EFU80550.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 51333] Length = 640 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 218/694 (31%), Positives = 313/694 (45%), Gaps = 74/694 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET SP L K GV+ Y I L +YA D V+ D +P +L Sbjct: 1 MRTLSIDIETYSPVILAKAGVYKYCNHPDFKILLFSYAIDSCTVRTVDLASGEQLPDAVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V A+N+ FER LG + W C+ V A T GLP SLK+ LN Sbjct: 61 DALADSAVTKWAYNASFERTCLSAYLGRLLDPAGWRCSMVWAATLGLPLSLKDVGKVLNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177 KM+EGK LI FC +S ++ W+LF Y RDVE + ++L Sbjct: 121 DAQ--KMDEGKDLIKHFCVPDDNS--QRRLPSSDPAGWKLFKMYNARDVEVETAIRQKLA 176 Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 P+ D + + +DQ INDRG RID L + + R + KLT + + Sbjct: 177 DFPVPDYLWEQYEVDQRINDRGIRIDTTLAANAIAIDEEHRAQALARAHKLTG--LDNPA 234 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L+ +L G + M++ ++ L+ N T ++ + R S S++ K + Sbjct: 235 SPLQLQEWL-NQHGCPIESMAKESVDDALA--NATGQVREALELRQELSRSSVAKYRKMI 291 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + +D R G LQFYGA+RTGRW+G + Q QNLPR + + + GET+ Sbjct: 292 DVTCTDQRAHGLLQFYGANRTGRWAGRLVQVQNLPRNYLPDLTQARGLVRDGNGETLEML 351 Query: 357 L----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 S +R+ I S + +VAD + IEARVLAW+AGE+ + AF NGED+Y T Sbjct: 352 YSSVPDTLSQLIRTAFIPSGAHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCAT 411 Query: 413 YAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F P++K V+ E R GK+ LA GY G K M Sbjct: 412 ASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------------------ 453 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 A+K L + + AWR + ++QLW + Sbjct: 454 ----------------------ALKMGLSEDELQPIVDAWRQANPNIVQLWHKVDNAATR 491 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT------ 584 + G ++ R L + + I LPS RRL Y + + Sbjct: 492 AISTGRPLTLR------NLGFEKKSGILFITLPSGRRLAYVKPGIGVNRFGGTSITYWGQ 545 Query: 585 ---SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + + TYGGKL ENIVQA +RD+L E + G+ IV+ +HDE+V + P Sbjct: 546 GVARKWQKLETYGGKLVENIVQATARDLLAEAITRIENAGHQIVMHIHDEVVIDEPINSG 605 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V +C+LM + P WA+GLP+ A GYE Y+K Sbjct: 606 TTVADICALMNELPQWAEGLPIDAAGYECGFYQK 639 >gi|300853539|ref|YP_003778523.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300433654|gb|ADK13421.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 649 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 215/702 (30%), Positives = 328/702 (46%), Gaps = 81/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L Y+ D VK+ D +P +++ Sbjct: 1 MKFISIDIETFSSVNLQKSGVYRYAESEDFDILLFGYSVDGGEVKVIDLARGEKIPIEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGI----DIPSKRWICTSVLARTNGLPSSLKNACL 114 L D++V+ A N+ FERI K LG+ + K W CT + A T GLP SL+ Sbjct: 61 NALTDDSVIKWAFNAQFERICLSKWLGMKAGTYLSPKSWQCTMIWAATLGLPLSLEGVGA 120 Query: 115 ALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEAT 170 L F + K+ +GK LI F C + + +H ++ W++F Y KRDVE Sbjct: 121 VLGFKKQ--KLSQGKNLIKYFCIPCSPTKSNGGRTRNLPHHDIEKWKMFTFYNKRDVETE 178 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +L P+S E + LDQ IND G +D+D V + + + + + +LT Sbjct: 179 MAIQNKLSKFPVSKTEWQNYHLDQIINDGGINLDMDFVRQAISCDEKFKAENIKKAKELT 238 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L+ +L L G+ +S+ + +L S+ + + R + S+ Sbjct: 239 G--LENPNSPAQLKDWL-LKQGMKTDSLSKAVVSELLQDSDGE--IHEALSIRQQLAKSS 293 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K ++ V SD R RG +QFYGA+RTGR+SG + Q QNLP+ + +++ Sbjct: 294 VKKYTSMENVVCSDSRARGLIQFYGANRTGRYSGRLIQVQNLPQNHLPDLKQARSLVKSG 353 Query: 349 RGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + + S+ +R+ I G + +VAD + IEARV+AW+AGE W+I FA Sbjct: 354 NFTALDLLYDSIPSVLSELIRTAFIPRYGSRFIVADFSAIEARVIAWLAGERWRIDVFAG 413 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ FN P+ K ++ R GK+ ELALGY G K M Sbjct: 414 GGDIYCASASQMFNVPVKKNGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 463 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L+ + + AWR + + LW Sbjct: 464 ------------------------------AIQMGLVEDELKPIVDAWRNSNPNITSLWW 493 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLN 581 + VV+ ++ + + + + I LPS RRL Y G+ + Sbjct: 494 RIDRAVKTVVK------TKQPIEIYGIGIFYQSGILFIKLPSGRRLAYVKPLIGENRFGG 547 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQAISRDIL E M + + IV+ VHDE+V Sbjct: 548 ESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILAEAMLKLATHEFQIVMHVHDEVV 607 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E P SV +C +M++ P+WAKGL L A+GYE + Y+K Sbjct: 608 IEAP-NKVSSVEEICRIMSETPAWAKGLILNADGYECEFYKK 648 >gi|331648300|ref|ZP_08349389.1| putative DNA polymerase (P45) [Escherichia coli M605] gi|331042849|gb|EGI14990.1| putative DNA polymerase (P45) [Escherichia coli M605] Length = 687 Score = 700 bits (1806), Expect = 0.0, Method: Composition-based stats. Identities = 260/689 (37%), Positives = 373/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCDIPI-NNGTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVCKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKK+VV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKMVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYGESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|194429286|ref|ZP_03061813.1| DNA polymerase [Escherichia coli B171] gi|194412694|gb|EDX28989.1| DNA polymerase [Escherichia coli B171] Length = 687 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 259/689 (37%), Positives = 374/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y KG+ +Y+ N+ + + Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL ENI QA +RDIL M GY IVLTVH+E+++E PDT F+ Sbjct: 598 WQRLKTYGGKLVENITQAAARDILAGNMPLIEDAGYSIVLTVHNEVITEAPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ +P WA +PL A G+EA Y+K Sbjct: 658 LSALLSTDPEWAPDIPLNAGGFEAYHYKK 686 >gi|313618507|gb|EFR90506.1| DNA polymerase [Listeria innocua FSL S4-378] Length = 684 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 219/702 (31%), Positives = 324/702 (46%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y A+ + L YA D + VK+ D + +P ++L Sbjct: 39 MKNLEIDIETYSSTNLQKSGVYRYVEADDFEVILFGYAVDGDEVKVIDLMDGEKIPKEIL 98 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L DET+ A N+ FER+ + LG + W C+ V + GL SL+ Sbjct: 99 DALTDETITKWAFNAQFERVCLSRYLGYPTGTYLNPSSWKCSMVWSAYMGLALSLEGVGA 158 Query: 115 ALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + K+ EGK LI FC I+ + + WQ F Y KRDVEA Sbjct: 159 VLGLEKQ--KLTEGKDLIRYFCLPCTPTKINGGRTRNLSTDEIDKWQQFKAYNKRDVEAE 216 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ +RL P+ + D + LDQ INDRG ++D+D V + + +KL + ++T Sbjct: 217 IQIQQRLIKFPVPEDIWDEYHLDQEINDRGIKVDMDFVKQAIAMDDISHEKLLTVMQQIT 276 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G+++ + + + L ++ +++ R + S+ Sbjct: 277 N--LDNPNSVQQMKSWLCE-NGLEMETLGKKAVAEKLKETDGE--LNEVLSLRQQLAKSS 331 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV SD R RG QFYGA+RTGR++G + Q QNLP+ + + I Sbjct: 332 VKKYTAMENAVCSDSRARGMFQFYGANRTGRFAGRLVQLQNLPQNHMPDLKEARNIVRNG 391 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 ET+ D S +R+ + G K +VAD + IEARVL+W+AGE W+ K FA+ Sbjct: 392 DVETLEMLYEDIPDTLSQLIRTAFVPRVGHKFIVADFSAIEARVLSWLAGETWRTKVFAS 451 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K V+ R GK+ ELALGY G K M Sbjct: 452 GGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG---------- 501 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L + + AWR + + Q W Sbjct: 502 ------------------------------ALEMGLEEEELKPLVNAWRMSNPNITQFWW 531 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLN 581 D+ V+E S + + IVLPS RRL Y + G+ + Sbjct: 532 DVDRAAKQCVKENKSQETHSIE------FHCFSGMLFIVLPSGRRLAYVKPRIGENQFGG 585 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQAISRDIL MK+ Y IV VHDE++ Sbjct: 586 ESVTYEGVGGTKKWERLESYGPKFVENIVQAISRDILMHAMKSL--RHYRIVAHVHDEVI 643 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ET P SV +C M++ P WAKGL L A+GYE Y+K Sbjct: 644 IET--NPQISVTEVCKQMSQVPPWAKGLLLDADGYECDFYQK 683 >gi|331654014|ref|ZP_08355015.1| putative DNA polymerase (P45) [Escherichia coli M718] gi|331048863|gb|EGI20939.1| putative DNA polymerase (P45) [Escherichia coli M718] Length = 687 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 258/689 (37%), Positives = 373/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELECTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y +G+ +Y+ N+ + + Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|116630096|ref|YP_815268.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|238854131|ref|ZP_04644478.1| DNA polymerase [Lactobacillus gasseri 202-4] gi|116095678|gb|ABJ60830.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Lactobacillus gasseri ATCC 33323] gi|238833207|gb|EEQ25497.1| DNA polymerase [Lactobacillus gasseri 202-4] Length = 644 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 206/704 (29%), Positives = 321/704 (45%), Gaps = 90/704 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDLGPVKVVDLTQGEKIPQPIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + +G + W C+ V + T GLP SL + L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLSDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K+ GK L+ FC P T++N WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKSNQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E+ ++L P+S E + + +DQ INDRG RID LV + + + K Sbjct: 173 VEMEITQKLERFPVSQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQENFHDQYLQVSQK 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + L+ +L G+++ +S+ ++ +L + T ++ R S Sbjct: 233 LTG--LANPNSPLQLKDWLNQR-GMNIDSLSKASVAQLLQTT--TGKVHQVLSLRQLLSK 287 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 S++ K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 288 SSVKKYQAMQKAMCRDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347 Query: 347 LNRGETIADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 ++ + S +R+ I S G VAD + +EARV+AW++GE+W+ KAF Sbjct: 348 QGNTTALSMLYDSVPDVLSQLIRTAFIPSQGHHFYVADFSAVEARVIAWLSGEEWRQKAF 407 Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 AN EDIY + ++ F P+ K V+ E R GK+ ELALGY G K M Sbjct: 408 ANNEDIYCASASQMFGVPVVKHGVNGELRQKGKIAELALGYGGSIGALKAMG-------- 459 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A L + + WR ++Q Sbjct: 460 --------------------------------ATNLGLTEEELHSLVQMWRNASPHIVQF 487 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 W D+ + ++ + + + + + L S R+L YS K + Sbjct: 488 WWDIDKAAKECIKSHLPQATHGIKFI------YRSGCMFLRLRSGRKLCYSKPKIGINRF 541 Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + + + R TYG KL ENIVQA SRD+L E M+ G +V+ +HDE Sbjct: 542 GSESITFMGINAVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEDAGNPVVMHIHDE 601 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V + P +S+ + +MT+ P WA GL L A G+ + Y+K Sbjct: 602 AVIDAP--ANYSLEKMVKIMTEVPRWADGLILNAAGFVSDFYKK 643 >gi|302876795|ref|YP_003845428.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307687477|ref|ZP_07629923.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302579652|gb|ADL53664.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 663 Score = 697 bits (1799), Expect = 0.0, Method: Composition-based stats. Identities = 206/714 (28%), Positives = 318/714 (44%), Gaps = 98/714 (13%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 L IDIET S L K GV+ Y+E + + L AY+ D V + D ++P ++LQ Sbjct: 6 TLSIDIETYSSIDLAKCGVYKYSESSDSEVLLFAYSVDGGSVIVIDVANGESIPDEILQA 65 Query: 61 LRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLART 102 L D++V+ A N+ FER+ L G + W C+ + + Sbjct: 66 LVDDSVIKWAFNAAFERVFLSIWLKRNYPELFCSYSIPEDSVGNYLDPSAWRCSMIWSAY 125 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS----IDSPPYDCTRANHVQAWQL 158 GLP SL+ L E K++EGK LI FCK ++ + W+L Sbjct: 126 MGLPLSLEGVGAVLGLEEQ--KLKEGKDLIRYFCKPCAATKVNGGRTRNLPEHAPDKWEL 183 Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 F Y KRDVE + K+L P+ + + + LDQ INDRG +D+D+V + A Sbjct: 184 FKAYNKRDVEVEMNIQKKLSHYPVPEFVWEEYHLDQEINDRGIALDMDVVENAIRIDAIS 243 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L + LTD + + ++ +L G+D + + + +L + D Sbjct: 244 KATLMATMQDLTD--LENPNSVAQMKGWLAAK-GVDTDSLDKKAVIELLK--TVPTDVAD 298 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ R + S++ K + AV DGR RG QFYGA+R+GRW+G + Q QNLP+ Sbjct: 299 VLTLRQQLAKSSVKKYQAMQNAVCDDGRARGMFQFYGANRSGRWAGRIIQLQNLPQNHME 358 Query: 337 EEILTQTIQALNRGE----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + + + I E + G+ S+ +R+ I G K VAD + IEARV+A + Sbjct: 359 DLDVARDIVKSGDYEILNMFYDNVPGVLSELIRTAFIPREGYKFAVADFSAIEARVIAHL 418 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKT 450 A E W++K FA+ DIY + + F P++K + R GK+ ELALGY G + Sbjct: 419 AKERWRMKVFADNGDIYCASASAMFGVPVEKHGQNAHLRQKGKIAELALGYGGSVGALTS 478 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M A+ L + + AW Sbjct: 479 MG----------------------------------------ALDMGLAEEELQPLVDAW 498 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 RA + ++Q W D+ ++E + + + + IVLPS RRL Y Sbjct: 499 RAANPNIVQFWWDVDNAVKRAIKERTATKTHGIRFI------YKSAMLFIVLPSGRRLAY 552 Query: 571 SDVKGDCSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + + + R +YG K ENIVQAISRDILC ++ T + Sbjct: 553 VKPRIGENKFGGESVTYEGVGTNKKWERIESYGPKFVENIVQAISRDILCYALR--TLSH 610 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E S+ +C M + P W +GL L+A+GYE + Y+K Sbjct: 611 CFIVGHVHDEVIIECRQDA--SLEAICEQMGRVPEWIEGLLLRADGYETQFYKK 662 >gi|260845239|ref|YP_003223017.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] gi|257760386|dbj|BAI31883.1| putative DNA polymerase [Escherichia coli O103:H2 str. 12009] Length = 687 Score = 696 bits (1797), Expect = 0.0, Method: Composition-based stats. Identities = 257/689 (37%), Positives = 373/689 (54%), Gaps = 24/689 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP +L C L + Sbjct: 64 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGALGELCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D++L + + QE+K+L + ++TDG ++++ Q Sbjct: 184 YQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRLAKRTQEMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRLQASTTSTSKYKALMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 304 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YAKAF+ D V K R IGKVMEL LGY GG F T A GLDL + Sbjct: 424 AYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFALVYGLDLDGLANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A+S + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRRAHPATCDFWYELECTVRTA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQ 586 + + ++ L +RR + I LPS R + Y +G+ +Y+ N+ + + Sbjct: 543 I-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPSPVIEQGNITYMGVNSYSRK 597 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE+++E+PDT F+ Sbjct: 598 WQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLTVHDEVITESPDTEDFNDKA 657 Query: 647 LCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +L++ NP WA +PL A G+EA YRK Sbjct: 658 LSALLSTNPEWAPDIPLNAGGFEAYHYRK 686 >gi|304439199|ref|ZP_07399117.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372331|gb|EFM25919.1| DNA-directed DNA polymerase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 643 Score = 696 bits (1797), Expect = 0.0, Method: Composition-based stats. Identities = 215/698 (30%), Positives = 332/698 (47%), Gaps = 79/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M K+ ID+ET S L K GV+ YAE I L AY+ DD VK+ D +P ++L Sbjct: 1 MKKISIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGEVKVIDLASGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L DE++ A N+ FER+ + L + + W CT + + GLP SL+ L Sbjct: 61 SALSDESIEKWAFNANFERVCLSRFLEERLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + KM EGKALI F CK + + +H + W +F EY +RDVE E+ Sbjct: 121 DKQ--KMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLGKWYIFKEYNQRDVETEMEIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L P+ E + + +DQ INDRG ID LV + R++ + ++LT + Sbjct: 179 KKLSVFPMPQSEWENYWVDQNINDRGILIDEILVDSAIKFDEILREENMDRAIELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +++ ++S + N K+++ R S S++ K Sbjct: 237 ENPNSPLQLKEWLNKK-GLEIDSLAKKDVESAIK--NAEGDIKEVLELRQELSKSSVRKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + + + R RG +QFYGA+RTGR+SG + Q QNL R + L +++ ET Sbjct: 294 DAMKNVKGKENRARGLIQFYGANRTGRYSGRLIQVQNLRRNNLKDLDLARSLVKNRDYET 353 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + P + S +R+ I G + +++D + IEARVLAWIA E W + AF NGEDI Sbjct: 354 MEFLYESPSDILSQLIRTAFIPKEGTRFIISDFSAIEARVLAWIAEEQWVLDAFENGEDI 413 Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T ++ F P++K ++ R GK+ LA GYQG K M Sbjct: 414 YCRTASRMFGVPVEKHGINGHLRQKGKIATLACGYQGALGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 ++ L + + +WR + ++ LW D+ Sbjct: 460 --------------------------GIEMGLSEDELQSIVDSWREANPNIVSLWWDIDS 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 VV+ R LV+ K + I LPS RRL Y K + + Sbjct: 494 VVKRVVK------TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESVV 547 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 ++ + +YGGK ENIVQAI+RDIL E M K G++IV+ +HDE+V E Sbjct: 548 YEGIVVGNKWDKIESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE-- 605 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + S+ + +M+ P WA GL L A+G+E++ Y+K Sbjct: 606 -SDSSSIEEVNQIMSIVPGWASGLILDADGFESEFYKK 642 >gi|256847832|ref|ZP_05553277.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256715521|gb|EEU30497.1| DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 644 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 201/704 (28%), Positives = 308/704 (43%), Gaps = 90/704 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + GV+ YA+ + L YA D PVK+ D T+ ++P ++ Sbjct: 1 MKQLSIDIETYSNTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + + + W C+ V + T GLP SL++ L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K+ GK L+ FC P T+AN WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E+ ++L P+ E + + +DQ INDRG RID LV + + + K Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKK 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + L+ +L GI +S+ ++ +L + T ++ R S Sbjct: 233 LTG--LANPNSPLQLKDWLH-QQGIKTDSLSKASVAQLLQTTTGT--VHQVLALRQLLSK 287 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 S+I K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 288 SSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347 Query: 347 LNR----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + S +R+ I S VAD + +EARV+AW++ E W+ ++F Sbjct: 348 QGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESF 407 Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M Sbjct: 408 AKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG-------- 459 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A L + + WR ++Q Sbjct: 460 --------------------------------ATNLGLTDDELPPLVQMWRNASPHIVQF 487 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 W D+ + ++ + + + + L S R L Y K + Sbjct: 488 WWDVDKAAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRF 541 Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + + + R TYG KL ENIVQA SRD+L M+ G +V+ +HDE Sbjct: 542 GSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDE 601 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V + P S+ T+ +MT+ P WA GL L A G+ Y+K Sbjct: 602 AVIDAPTDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|220930425|ref|YP_002507334.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] gi|220000753|gb|ACL77354.1| DNA-directed DNA polymerase [Clostridium cellulolyticum H10] Length = 652 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 213/701 (30%), Positives = 331/701 (47%), Gaps = 76/701 (10%) Query: 1 MSK-LFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 M K L IDIET S L K GV+ Y E I L AYA+DDEP+ + D + +P + Sbjct: 1 MKKILSIDIETYSSVDLIKCGVYRYVEAPDFEILLFAYAYDDEPITVIDLADFEELPEQV 60 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L D V+ A+N+ FER K +P ++W CTSV A T GLP +L L Sbjct: 61 TKDLTDPDVIKAAYNANFERTCIAKFYNKPMPPEQWRCTSVHALTLGLPGNLDGVAKVLG 120 Query: 118 FSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATREL 173 K GK LI F CK + + +H W+ F +YCK+DV R + Sbjct: 121 LDAQ--KDTAGKNLIKYFSVPCKPTKVNGGRTRNFPHHAPDKWKQFKDYCKQDVVVERAI 178 Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 K++ P+ + E LW LDQ IND G R+D LV + + Q +LD + +LT Sbjct: 179 RKKIEKYPVPEHEWKLWTLDQKINDAGVRLDPVLVQQALKCDLQYATRLDAEAKELTG-- 236 Query: 232 IRSSRQTYALRMYLFLITGIDLVD-MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + T L ++L G+ + + + + + +L + + ++ R S ++ Sbjct: 237 LDNPNSTTQLTVWL-KKQGLTVDNGLGKDYIPGLLDQAKGDETVTRMLELRKEMSKTSTK 295 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SD R RG LQF GA+RT RW+G + Q QNLP+ + + + + + + Sbjct: 296 KYEAMERAMCSDDRARGLLQFCGANRTWRWAGRLIQVQNLPQNKIPDLGVARELLHSGKF 355 Query: 351 ETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E I P + S +R+ I S+G + +V+D + IEARV+AW+AGE W++K F + Sbjct: 356 EAIELLFNSPPFVLSQLIRTAFIPSDGCRFIVSDFSAIEARVIAWLAGESWRMKVFKSHG 415 Query: 407 DIYVTTYAKAFNTPIDKVSKEQ--RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY + + F+ PI++++K R GK+ ELALGY G + M Sbjct: 416 KIYEASASHMFHVPIEEITKGNPLRQKGKIAELALGYGGSIGALEAMG------------ 463 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A+K L + AWR + +++LW D+ Sbjct: 464 ----------------------------ALKMGLDADELPDLVTAWRNSNPKIVKLWWDV 495 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KGD 576 + V+E + + + + I LPS R+L Y + Sbjct: 496 DKAAMTAVREHMPVRIQ-----YGITFSYKDGFLFIKLPSGRKLAYVKPKIKDGKFGRPA 550 Query: 577 CSY--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 +Y ++ R TYG KL ENIVQA++RD L M GYDI + VHDE++ Sbjct: 551 LTYEGMDQIKKTWERIDTYGPKLVENIVQAVARDCLAVNMLRLDDAGYDIRMHVHDEVIL 610 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P+T ++ + +M++ WA GLPL+A+GYE + Y+K Sbjct: 611 DVPNTDTDALAQVNEIMSQPIDWAPGLPLRADGYETEFYKK 651 >gi|150391701|ref|YP_001321750.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] gi|149951563|gb|ABR50091.1| DNA-directed DNA polymerase [Alkaliphilus metalliredigens QYMF] Length = 649 Score = 694 bits (1791), Expect = 0.0, Method: Composition-based stats. Identities = 209/702 (29%), Positives = 316/702 (45%), Gaps = 84/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L DIET S L K GV+ Y A+ I L AY+ D VK+ D +P +L Sbjct: 4 IKTLHCDIETYSSVNLAKCGVYRYVQADDFEILLFAYSTDGSEVKIIDLARGEKIPPLIL 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----IPSKRWICTSVLARTNGLPSSLKNACL 114 L D+ V+ AHN+ FERI F + LG I + W CT A GLP SL Sbjct: 64 SALEDDKVIKYAHNASFERICFSRFLGYPVGKYISPESWRCTMTWAAYMGLPLSLVGVGA 123 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + KM EGK LI FC + ++ + W+ F Y RDVEA Sbjct: 124 VLGLGKQ--KMTEGKDLIRFFCGPCSPTKTNGNRTRNLPSDDPEKWERFKSYNIRDVEAE 181 Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+ ++L P+ D D + L + IND G ++D+D V + + KL + + ++T Sbjct: 182 MEIEQKLIKFPVPDFIWDEYHLSERINDSGIKVDMDFVKQAIAMNEISHTKLMDQMQEIT 241 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + ++ +L G++ + + + +L + + +++ R + S+ Sbjct: 242 E--LDNPNSVQQMKDWLSD-NGLETDTLGKKAVAELLK--DAPEHLAEVLKLRQQLAKSS 296 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + AV SDGR+RG F GA+RTGR+S + Q QNLP+ + ++I Sbjct: 297 VKKYTAMENAVCSDGRIRGMFTFLGANRTGRFSSKIVQLQNLPQNHMMDLKEARSIVKNG 356 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 E + D S +R+ + G K +VAD + IEARVL+W+AGE W+ + FAN Sbjct: 357 DSEALELLYEDIPDTLSQLIRTAFVPKEGNKFIVADFSAIEARVLSWLAGEQWRNEVFAN 416 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F P++K V+ R GK+ ELALGY G K M + ++ Sbjct: 417 GGDIYCASASQMFRVPVEKHGVNAHLRQKGKIAELALGYGGSVGALKAMGALEMGLEEEE 476 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + + AWRA + +++ W Sbjct: 477 LK----------------------------------------PLVNAWRASNPNIVKFWW 496 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ ++E ++ V + + IVLPS R+L Y + Sbjct: 497 DVDREVKKCIKE------KKSQEVQNIKFHYMSGMLFIVLPSGRKLAYVKPNIGENIFGG 550 Query: 583 A---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R +YG K ENIVQAISRDIL MK T + IV VHDE++ Sbjct: 551 ESVTYEGVGATKKWERIESYGPKFVENIVQAISRDILMYAMK--TLSTCSIVAHVHDEVI 608 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E S+ +C M + P WAKGL L A+GYE Y+K Sbjct: 609 IEA--DQSLSLDMVCKQMGRVPPWAKGLLLDADGYECDFYKK 648 >gi|300909419|ref|ZP_07126880.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893284|gb|EFK86643.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 198/698 (28%), Positives = 310/698 (44%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + G + YA+ + L YA D PVK+ D T+ +PS ++ Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPP-YDCTR---ANHVQAWQLFGEYCKRDVEATRELF 174 K+ GK L+ FC + + TR + WQ F +Y +RDVE E+ Sbjct: 121 PRQ--KITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P+ E + + +DQ INDRG RID LV + + + + +LT + Sbjct: 179 QKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G++ +++ ++ +L + T ++ R S S++ K Sbjct: 237 ANPNSPLQLKNWLH-QQGVETDSLAKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR--- 349 + +A+ DG + G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTA 353 Query: 350 -GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G VAD + +EARV+AW++GE+W+ AFA EDI Sbjct: 354 LAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI 413 Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F P+ K ++ E R GK+ ELALGY G K M Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A K L + + WR ++Q W D+ + Sbjct: 460 --------------------------ATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 ++ + + + + L S R L Y K + + + Sbjct: 494 AAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRFGSESIT 547 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R TYG KL ENIVQA SRD+L M+ G +V+ +HDE V + P Sbjct: 548 FMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ T+ +MT+ P WA GL L A G+ Y+K Sbjct: 608 TDR--SLDTIVKIMTEVPDWADGLILNAAGFVGGFYKK 643 >gi|227498331|ref|ZP_03928481.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226903793|gb|EEH89711.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 662 Score = 693 bits (1789), Expect = 0.0, Method: Composition-based stats. Identities = 205/718 (28%), Positives = 303/718 (42%), Gaps = 100/718 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + IDIET S L K GV+ YAE I L YA D V++ D +P D+L Sbjct: 1 MKTISIDIETFSDVNLAKCGVYKYAESPAFEILLFGYAIDGGKVQVVDLARGERIPDDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98 L DE+V A N+ FER+ + L + W C+ + Sbjct: 61 DALTDESVTKWAFNASFERVCLSRYLRDLRISLDPFHDHHPLSRDCARFLNPAGWKCSMI 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQ 154 + GLP SL+ A L KM+EGK LI FC ++ + Sbjct: 121 WSAYMGLPLSLEGAGAVLKLDSQ--KMKEGKDLIRYFCVPCKETKLNGGRTRNLPRHAPD 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W LF Y KRDVE + +RL P+ + D + LDQ INDRG ID L + Sbjct: 179 KWTLFKSYNKRDVEVEMVIQERLKKYPVPEPIWDEYHLDQEINDRGIAIDRTLAENAIVI 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 A+ R L + T + + + +L G+ + + ++ +L + Sbjct: 239 DARSRDSLMAVLKGKTG--LENPNSVIQMIGWL-EQHGMKTDSLGKKQVQELLK--TAEE 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++L R + S++ K + D R RG QFYGA+RTGR++G Q QNLP+ Sbjct: 294 PLRSVLLLRQKLAKSSVKKYQAMEMTACEDSRARGMFQFYGANRTGRFAGRHIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + E + + S +R+ + G K VV+D + IEARV Sbjct: 354 NHLPDLAEARELVRQGNYEALELLYDSIPDVLSQLIRTAFVPRKGMKFVVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAK 446 L+W+AGE W++ FA DIY + + F P++K V+ R GK+ ELALGY G Sbjct: 414 LSWLAGETWRLDVFARNGDIYCASASSMFGVPVEKHGVNGHLRQKGKIAELALGYGGSTG 473 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 K M A+ L + Sbjct: 474 ALKAMG----------------------------------------ALDMGLTENELYPL 493 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 ++WR+ + ++ W + ++E + A + + I LPS R Sbjct: 494 VQSWRSANPHIVDFWWQVDATVKTAIKEQIPMRA------GCIRFLCQSGMLFIQLPSGR 547 Query: 567 RLVYSDVK-GDCSYLN--------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 RL Y + G+ + AT + R +YG K ENIVQ ISRDILC M+ Sbjct: 548 RLSYVKPRIGENRFGGESVTYEGIGATKKWERLESYGPKFVENIVQGISRDILCYAMQ-- 605 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T IV VHDE++ E SV +C M + P WA+GL L+A+GYE + Y+K Sbjct: 606 TLRCCAIVGHVHDELIIECSRDA--SVDAICEQMGRTPPWAEGLLLRADGYECEFYQK 661 >gi|300856814|ref|YP_003781798.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] gi|300436929|gb|ADK16696.1| phage related DNA polymerase [Clostridium ljungdahlii DSM 13528] Length = 650 Score = 692 bits (1786), Expect = 0.0, Method: Composition-based stats. Identities = 209/699 (29%), Positives = 324/699 (46%), Gaps = 74/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET + KVG + Y E I L AYA++DEPV++ D + +P + Sbjct: 1 MDTLAIDVETYCELDIKKVGAYKYCEHPSFQILLFAYAFNDEPVEVIDFAQGEELPQKVK 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L + ++ A N+ FE KK L I ++ W CT V + GLP SL L F Sbjct: 61 TALLNPGILKTAFNANFEINALKKYLINGIDAEDWQCTMVQSLILGLPGSLDMVGKVLRF 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 E KM+EGKALI FCK + + + W++F +Y K+DVE R + Sbjct: 121 EEDKQKMKEGKALIQYFCKPCKPTKSNGGRTRNLPEHAPEKWEIFKKYNKQDVEVERAIR 180 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P ++ E+ LW LDQ INDRG D++L+ K E K+L ++ +LT + Sbjct: 181 NKLNRYPTTENEQRLWELDQCINDRGVGADIELIEKAIECNNSYNKRLTKEATELTG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ ++ G ++ +++ ++ +++ S ++ K ++ R + ++I K Sbjct: 239 SNPNSPTQLKRWIGERVGHEVKSLTKDSIPTLIKESKDEKV-KKILELRQLMAKTSIKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + + + + Sbjct: 298 ETMQRARCEDGRMRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDDARNFIRTGQFDK 357 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I G + +VAD + IEARV+AW AGE W++ F N DI Sbjct: 358 VEFLYDSIPDTLSQLIRTAFIPKEGNRFIVADFSAIEARVIAWYAGEQWRLDVFNNNGDI 417 Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + +K F P++K ++ R GK+ ELALGY G +M + + V Sbjct: 418 YCASASKMFKVPVEKHGINGHLRQKGKIAELALGYGGSVGALMSMDKKKNIPEDELPGLV 477 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 K DW A H + + W D+ + Sbjct: 478 K------DWRDASPH-----------------------------------ITKFWWDVDK 496 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--------CS 578 ++E ++ + L + I LPS R+L Y K + + Sbjct: 497 AAKKAIRERTTVVLQF-----GLKFIYDPGVLFIQLPSGRKLAYIRPKIEPGPYDKPIIT 551 Query: 579 YLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 Y + Q TYG K+ ENIVQA +RD L M+ G+ IV+ VHDE++ + Sbjct: 552 YEGLQQTSKQWTTLETYGPKIVENIVQATARDCLGITMQRVEDKGFHIVMHVHDELICDV 611 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P +V +C + + WA GLPLKA+GYE Y K Sbjct: 612 PKGK-GTVEEICDIFGEPIEWAPGLPLKADGYECNYYMK 649 >gi|153938384|ref|YP_001391676.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934280|gb|ABS39778.1| DNA-directed DNA polymerase I [Clostridium botulinum F str. Langeland] Length = 658 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 221/703 (31%), Positives = 330/703 (46%), Gaps = 78/703 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L ID+ET S + G + Y E I L AYA++DEPV++ D +PS++ Sbjct: 5 IDTLSIDVETYSSMDIKTSGAYKYCESPDFEILLFAYAFNDEPVQIVDLANGEKLPSNVF 64 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D ++ A N+ FER K P ++W CT V A T GLPSSL AL F Sbjct: 65 YALTDPNIIKTAFNANFERNSIKNQYPALCPPEQWECTMVKALTLGLPSSLDMVGKALKF 124 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174 E KM+EGKALI FCK + + ++ W+ F EYCKRDVE RE+ Sbjct: 125 EEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVEREIR 184 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L E+ LW LDQ INDRG DL L+ + E ++L + ++LT + Sbjct: 185 NLLNRYETKVEEQKLWQLDQHINDRGIGTDLILIKQAIECDTNYTERLTKAAIELTG--L 242 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSGSAI 289 + ++ ++ G ++ +++ ++ ++ + N +++ K L L R + ++I Sbjct: 243 ENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEATSLNKSEVIKMLEL-RQLMAKTSI 301 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K +T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + + + Sbjct: 302 KKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREGK 361 Query: 350 GETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 + + S +R+ I G + +V+D + IEARV+AW AGE W++ F+ Sbjct: 362 FQEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFSTH 421 Query: 406 EDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + ++ F I+ + K E R GK+ ELALGY G +M + ++ Sbjct: 422 GKIYEASASQMFKVAIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEELP 481 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 VKS W A + + + W D Sbjct: 482 GLVKS------WRNA-----------------------------------NPNITKFWWD 500 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------- 576 + + V++E +++ + L + I LPS R+L Y K + Sbjct: 501 VDKAAKKVIRERTTVNLQ-----YGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFSG 555 Query: 577 --CSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 +Y + Q R TYG KL ENIVQA SRD L E M K GYDIV+ VHDE+ Sbjct: 556 DKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVDKAGYDIVMHVHDEV 615 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V + P +V + LM + WA GLPLKA+GYE Y+K Sbjct: 616 VLDIPKDRA-TVKEINELMGQPIEWAPGLPLKADGYECNYYQK 657 >gi|197303496|ref|ZP_03168535.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] gi|197297494|gb|EDY32055.1| hypothetical protein RUMLAC_02218 [Ruminococcus lactaris ATCC 29176] Length = 661 Score = 691 bits (1782), Expect = 0.0, Method: Composition-based stats. Identities = 192/716 (26%), Positives = 305/716 (42%), Gaps = 98/716 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L ID+ET S + K G + YAE I L + D+ PV ++D +P+++L Sbjct: 2 MKELSIDLETYSDIDISKCGAYKYAESNNFEILLFGVSVDNGPVVVYDLASGDEIPAEIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID------------------IPSKRWICTSVLA 100 L DE ++ A N+ FER+ L + W CT + + Sbjct: 62 AALSDENIIKWAFNASFERVCLSNWLRKHHPEYFKTYNTQGDPVQNFLDPASWKCTMIWS 121 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAW 156 GLP SL+ L + KM+EGK LI FC K + + H W Sbjct: 122 AYMGLPLSLEGVGAVLKLQDQ--KMKEGKDLIKYFCSPCKPTKVNGGRTRNLPEHAPDKW 179 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + F Y +RDVE + +RL P+ D + +DQ IND G +D+D+V Sbjct: 180 ETFKTYNRRDVEVELAIKQRLSKFPVPDSVWHEYHIDQEINDSGIMLDMDVVENAIAFDE 239 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + L + +T+ + + ++ +L G++ + + + ++ ++ Sbjct: 240 RSKSALITAMKNITN--LDNPNSVVQMKQWLSD-NGVETESLGKKEVAGLIKETD--GDI 294 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + RL + S++ K + AV DGR G QFYGA+R+GRW+G + Q QNLP+ Sbjct: 295 SKALKLRLQLAKSSVKKYQAMQNAVCKDGRAHGMFQFYGANRSGRWAGRLIQLQNLPQNH 354 Query: 335 RSEEILTQTIQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ + + +T+ D S +R+ IA G K +V+D + IEARVLA Sbjct: 355 MSDLTEARELVRTGDYDTLDMLYDDIPDTLSQLIRTAFIARPGYKFIVSDYSAIEARVLA 414 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448 +AGE W+ K FA G+DIY + ++ F P+ K ++ R GK+ ELALGY G Sbjct: 415 HLAGETWRSKVFAEGKDIYCASASQMFGVPVKKHGINSHLRQKGKIAELALGYGGSVGAL 474 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K+M A++ L + + Sbjct: 475 KSMG----------------------------------------ALEMGLTEEELQPLVD 494 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 +WR+ + + W ++ ++ + + I PS R L Sbjct: 495 SWRSSNPMITAFWWNVDNAIKTAIKMHIPTEVNGIHFC------YKSGMLLIKRPSGRVL 548 Query: 569 VYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K + T + R +YG K ENIVQA+SRDILC MK T Sbjct: 549 SYVKPKIGENRFGGESVTYEGIGSTKKWERIESYGPKFVENIVQAVSRDILCNAMK--TL 606 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV VHDE++ E + + +C M ++ W G+ L+A+GYE Y+K Sbjct: 607 RHCFIVGHVHDELIIEC--SSGVDLNEICKQMGRSLDWMPGILLRADGYETNFYKK 660 >gi|167746061|ref|ZP_02418188.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] gi|167654576|gb|EDR98705.1| hypothetical protein ANACAC_00756 [Anaerostipes caccae DSM 14662] Length = 663 Score = 690 bits (1781), Expect = 0.0, Method: Composition-based stats. Identities = 192/716 (26%), Positives = 317/716 (44%), Gaps = 98/716 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + + IDIET S L K GV+ Y ++ I L Y+ D V + D + +P +++ Sbjct: 4 IKTISIDIETYSDVDLQKCGVYKYVQSDSFEILLFGYSVDGGEVSVVDLKQGEKIPMEII 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100 L DE + A N+ FER+ + L G + W C+ V + Sbjct: 64 MALTDENITKWAFNANFERVCLSEYLRRFYPKKFVSYSIPEDSVGNYLDPSSWKCSMVWS 123 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAW 156 GLP L A L E K+ EGK LI FC + + + W Sbjct: 124 AYMGLPLLLAGAGAVLGLEEQ--KLTEGKELIRYFCVPCKPTKVNGGRTRNLPQHDMIKW 181 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 ++F +Y KRDVE + +L P+ + + + LDQ INDRG +D+D+V Sbjct: 182 EMFKKYNKRDVEVEMSIQDKLRHFPVPNFVWEEYHLDQEINDRGITLDMDVVTNAIAFDE 241 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + L + + ++T + + ++ +L G+++ + + + ++L + + Sbjct: 242 KSKAVLADKMQEMTG--LENPNSVQQMKQWLS-CNGLEMDSLGKKEVAAVL--NTAPEPL 296 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 K ++ R + S++ K ++ AV SDGR RG FYGA+R+GRW+G + Q QNLP+ Sbjct: 297 KTVLTLRQQLAKSSVKKYQAMANAVCSDGRARGMFMFYGANRSGRWAGRLIQLQNLPQNH 356 Query: 335 RSEEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ +++ E + D S +R+ + G + +V+D + IEARVL+ Sbjct: 357 MSDLEEARSLVKQGNYEAMNMLYDDVPDTLSQLIRTAFVPRKGMEFIVSDFSAIEARVLS 416 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVF 448 +AGE W+ FA+G DIY + ++ F P++K V+ R GK+ ELALGY G Sbjct: 417 HLAGEKWRTDVFASGGDIYCASASQMFKVPVEKHGVNGHLRQKGKIAELALGYGGSVGAL 476 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 K+M A+ L + + Sbjct: 477 KSMG----------------------------------------ALDMGLEEDELKPLVD 496 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 WR + +++LW D+ V++ R +++ + + I LPS R L Sbjct: 497 MWREANPNIVKLWWDVDRAVKKAVKQ------REPSSIGSITFSYKSGMLFIGLPSGRCL 550 Query: 569 VYSDVKGDCSYLN---------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 Y K + T + R +YG K ENIVQAISRDIL ++ T Sbjct: 551 SYVKPKMGINQFGSESVTYEGVGGTKKWERIESYGPKFVENIVQAISRDILMYAIR--TL 608 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + I VHDE++ E + S+ +C M + P W +G+ L+A+GYE + Y+K Sbjct: 609 SHCFICGHVHDELIIECSKS--VSLDVICEQMGRTPPWIEGILLRADGYETEFYKK 662 >gi|300909464|ref|ZP_07126925.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] gi|300893329|gb|EFK86688.1| DNA-directed DNA polymerase [Lactobacillus reuteri SD2112] Length = 644 Score = 690 bits (1780), Expect = 0.0, Method: Composition-based stats. Identities = 201/704 (28%), Positives = 310/704 (44%), Gaps = 90/704 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K+ GK L+ FC P T+AN WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E+ ++L P+ E + + +DQ INDRG RID LV + + + + Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + L+ +L GI +S+ ++ +L + T ++ R S Sbjct: 233 LTG--LANPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSK 287 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 S++ K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 288 SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347 Query: 347 LNR----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + S +R+ I S VAD + +EARV+AW++ E W+ ++F Sbjct: 348 QGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESF 407 Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M Sbjct: 408 AKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG-------- 459 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A K L + + WR ++Q Sbjct: 460 --------------------------------ATKLGLTDDELPPLVQMWRNASPHIVQF 487 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 W D+ + ++ + + + + L S R L Y K + Sbjct: 488 WWDVDKAAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRF 541 Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + + + R TYG KL ENIVQA SRD+L E M+ G +V+ +HDE Sbjct: 542 GSESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDE 601 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V + P S+ T+ LMTK P WA GL L A G+ + Y+K Sbjct: 602 AVIDAPFNR--SLDTMVQLMTKVPDWANGLILNAAGFVSDFYKK 643 >gi|325687766|gb|EGD29787.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK72] Length = 643 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 216/698 (30%), Positives = 334/698 (47%), Gaps = 79/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + I L AY D+ ++ D + +P ++L Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+ ++ A N+ FER+ K LG + +K W CT+VLA + GLP SL+ LN Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 E KM+EG LI F CK + + + +H + W+LF YCKRDVE + + Sbjct: 121 EEQ--KMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 RL PL + E+ + LDQ INDRG +D LV + ++++ + +L+ + Sbjct: 179 VRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+ + + + + L ++ L +++ RL S +++ K Sbjct: 237 ENPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADGEVL--EMLKLRLLMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + L +T+ + ET Sbjct: 294 QAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQFET 353 Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + G+ S+ +R+ + G + +VAD A IEARVLAW++GE W+++ F G DI Sbjct: 354 LDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDI 413 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F P++K + R GK+ ELALGY G M Sbjct: 414 YCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + + WR+ + ++ W ++ + Sbjct: 460 --------------------------ALDMGLEEEELQPLVNQWRSANPHIVAFWWEIDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581 V + R + LV+ + I LPS R+L Y + + Sbjct: 494 VAKQVYE------TREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + + R TYG KL ENIVQ I+RD+L GM + G IVL VHDE V E Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEVR 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV +C L+ P WA+GLPL+A+GY + Y+K Sbjct: 608 EE---SVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|227530261|ref|ZP_03960310.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349815|gb|EEJ40106.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 644 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 199/704 (28%), Positives = 308/704 (43%), Gaps = 90/704 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ ++P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSKDFELLLFGYAIDFGPVKVIDLTQGESIPPQVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D T++ A N+ FER+ + + + W C+ V + T GLP SL++ L Sbjct: 61 KALDDPTIIKSAFNAQFERVCLSRFVSHRLKPAGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K+ GK L+ FC P T+AN WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E+ ++L P+ E + + +DQ INDRG RID LV + + + + Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + L+ +L I +S+ ++ +L + T ++ R S Sbjct: 233 LTG--LANPNSPLQLKDWL-QQQDIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSK 287 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 S+I K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 288 SSIKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347 Query: 347 LNR----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + S +R+ I S VAD + +EARV+AW++ E W+ ++F Sbjct: 348 QGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESF 407 Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M Sbjct: 408 AKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG-------- 459 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A L + + WR ++Q Sbjct: 460 --------------------------------ATNLGLTDDELPPLVQMWRNASPHIVQF 487 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 W D+ + ++ + + + + L S R L Y K + Sbjct: 488 WWDVDKAAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPQPKIGINRF 541 Query: 581 NTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 + + + R TYG KL ENIVQA SRD+L E M+ +V+ +HDE Sbjct: 542 GSESITFMGNNTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDE 601 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V + P S+ T+ LMT+ P WA GL L A G+ + Y+K Sbjct: 602 AVIDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 643 >gi|327461124|gb|EGF07457.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK1057] Length = 643 Score = 688 bits (1775), Expect = 0.0, Method: Composition-based stats. Identities = 216/698 (30%), Positives = 334/698 (47%), Gaps = 79/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + I L AY D+ ++ D + +P ++L Sbjct: 1 MKTLSIDIETYSDVDLTKCGVYRYVDSLAFEILLFAYKEDENETQVVDLVQGEQIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+ ++ A N+ FER+ K LG + +K W CT+VLA + GLP SL+ LN Sbjct: 61 LALLDDAIIKTAFNANFERVCLSKFLGEHLSAKSWSCTAVLAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 E KM+EG LI F CK + + + +H + W+LF YCKRDVE + + Sbjct: 121 EEQ--KMKEGSRLIRYFCLPCKATKANGMRERNFPHHAPEDWELFKSYCKRDVEVEQAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 RL PL + E+ + LDQ INDRG +D LV + ++++ + +L+ + Sbjct: 179 VRLRNYPLLESEQFFYQLDQEINDRGIEVDQQLVEQAILCDLSYKEQVTKRAYELSG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+ + + + + L ++ L +++ RL S +++ K Sbjct: 237 ENPNSVSQLKGWL-EEQGVFMDSLGKKEVAKHLKEADGEVL--EMLKLRLLMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ + + L +T+ + ET Sbjct: 294 QAIERCVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLSLARTLVKEGQVET 353 Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + G+ S+ +R+ + G + +VAD A IEARVLAW++GE W+++ F G DI Sbjct: 354 LDTLYENVPGVLSELIRTAFVPKAGHQFIVADFAAIEARVLAWLSGESWRLEVFEQGGDI 413 Query: 409 YVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F P++K + R GK+ ELALGY G M Sbjct: 414 YCASASSMFGVPVEKHGANSHLRQKGKIAELALGYGGSVGALTAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + + WR+ + ++ W ++ + Sbjct: 460 --------------------------ALDMGLEEEELQPLVNQWRSANPHIVAFWWEIDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581 V + R + LV+ + I LPS R+L Y + + Sbjct: 494 VAKQVYE------TREPKKIKNLVISYQSGMLFITLPSGRKLAYVKPRMGMNAFGKPGLT 547 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + + R TYG KL ENIVQ I+RD+L GM + G IVL VHDE V E Sbjct: 548 YEGIGESKKWTRLETYGPKLVENIVQGIARDLLAYGMIQLKQKGLAIVLHVHDEAVVEVR 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV +C L+ P WA+GLPL+A+GY + Y+K Sbjct: 608 EE---SVAKVCQLLATKPDWAEGLPLRADGYACEFYKK 642 >gi|205375254|ref|ZP_03228044.1| DNA-directed DNA polymerase [Bacillus coahuilensis m4-4] Length = 649 Score = 688 bits (1774), Expect = 0.0, Method: Composition-based stats. Identities = 229/700 (32%), Positives = 336/700 (48%), Gaps = 77/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY+E I L AYA DDE V++ D +P+++L Sbjct: 1 MKTLIIDIETYSKVDLVKCGVYAYSESADFEILLFAYAVDDEEVEIVDLASGEKIPANIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + D TV+ A+N+ FER K I +P ++W CTSV A GLP L L Sbjct: 61 KAMIDPTVIKTAYNANFERTCLAKHFQIPMPPEQWRCTSVHALMLGLPGYLDGVAKCLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 KM+EGKALI F CK + + H W F +YCK+DVE RE+ Sbjct: 121 --QGQKMKEGKALIRYFSIPCKPTKVNGGRTRNLPKHDPARWDTFKDYCKQDVEVEREIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L PL E++LW LDQ IND G ID +LV + + +L E+ V+LT + Sbjct: 179 KKLEVFPLPTMEQELWELDQKINDEGVVIDTNLVNHAIKADKAFQDELIEEAVRLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L L G+++ +++ +++++S ++ K L+ R A S +++ K Sbjct: 237 ENPNSPAQLKGWL-LKQGLEVDSLAKKNVEALMSEVENPEV-KRLLELRRAMSKTSVKKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +V SD R+RG LQFYGASRTGRW+G + Q NLPR + + + + + E Sbjct: 295 EAMERSVGSDQRVRGLLQFYGASRTGRWAGRLVQIHNLPRNSLKDLQVARELLESGKYEA 354 Query: 353 IADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S +R+ I S G + VVAD + IEARV+AW+AGE W++ F + I Sbjct: 355 LEVLFESVSDVLSQLIRTAFIPSKGHRFVVADFSAIEARVIAWLAGERWRMDVFQSHGKI 414 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F PI+ + K R GK+ ELALGY G M Sbjct: 415 YEASAAQMFKVPIETIDKGSPLRQKGKIAELALGYGGSKGALMQMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A++ L + AWR + +++LW + Sbjct: 461 --------------------------ALEMGLTEDELPELVSAWREANPKIVKLWWGIEA 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577 V+E + + L K + I LPS R L Y K Sbjct: 495 AAIKAVKEKAVVKMQ-----HGLTFHYTKGILFITLPSGRSLAYVRPKIGIDERFGKEQL 549 Query: 578 SYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +Y T + Q R TYGGKLTENI+QAI+RD L M + GY I VHDE++ + Sbjct: 550 TYEGTEQGSKQWGRIPTYGGKLTENIIQAIARDCLAVSMLRLDEAGYRINFHVHDEVILD 609 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P S+ + ++M ++ WA GLPL A+ +E Y+K Sbjct: 610 VPI-ATGSMEEVENIMGQSIDWAPGLPLGADSFETFYYKK 648 >gi|315656936|ref|ZP_07909823.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492891|gb|EFU82495.1| prophage LambdaSa04 DNA-directed DNA polymerase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 655 Score = 687 bits (1772), Expect = 0.0, Method: Composition-based stats. Identities = 217/707 (30%), Positives = 319/707 (45%), Gaps = 85/707 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIET SP L K GV+ Y E + L +Y+ D PV++ D +MP ++L Sbjct: 1 MRTLFCDIETFSPVQLAKAGVYPYCEHPDFDLLLFSYSVDGGPVEIVDLANGQSMPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 L D V+ AHN+ FER+ L + ++W CT V + GLP SL Sbjct: 61 AALVDPDVVKWAHNAAFERVCLSAWLHRHHSELLGDGFLDPRQWRCTMVWSAYLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP----YDCTRANHVQAWQLFGEYCKR 165 L + K G+ LI +FC + S + + W F +Y +R Sbjct: 121 DAIAAVLKL--DVQKDSAGRKLIKQFCTPATPSVLNGGKHRNPPSADPTGWAHFIDYNRR 178 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 179 DVEVEQAIHDRLACFPMPESEWDTYALDQRINDAGILLDHTLVDNAVAVDEHHRNASLAR 238 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 KLT + + L+ +L G +L +++ + S L + K+++ R Sbjct: 239 AQKLTG--LDNPNSPIQLKQWLATR-GCELESLAKAEVDSALDTATGA--VKEVLELRGD 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + S++ K + SDGR RG +QFYGA RTGR++G + Q QNLPR + +T Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353 Query: 344 IQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + + S +R+ I S G + +VAD + IEARV+AW+AGE + Sbjct: 354 LVRTGNLDALELLYESVPDTLSQLIRTAFIPSTGHRFIVADFSAIEARVIAWLAGETSTL 413 Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AF G+D+Y T ++ F P++K V+ E R GK+ LA GY G K M Sbjct: 414 EAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKIAVLACGYGGSVGALKAMG----- 468 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+ L + + AWR + + Sbjct: 469 -----------------------------------ALNMGLAEHELKPIVDAWRQANPHI 493 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + LW D+ E + S+R+ + L I LPS RRL Y + Sbjct: 494 VGLWADVEEAAIAAI------SSRQPIRLRNLRFSVESGIFFIELPSGRRLAYVQPRLGE 547 Query: 578 SYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + + + + TYGGKL ENIVQAI+RD+L GM K G+ IV+ V Sbjct: 548 NRWGGTSVTYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVTGMHAVAKAGHQIVMHV 607 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDEIV + P+ F+V C+LM+ P+WA+GLPL A+GYE YRK Sbjct: 608 HDEIVIDEPENSGFTVTDACALMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|260579057|ref|ZP_05846956.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] gi|258602808|gb|EEW16086.1| prophage LambdaSa04, DNA polymerase [Corynebacterium jeikeium ATCC 43734] Length = 653 Score = 686 bits (1770), Expect = 0.0, Method: Composition-based stats. Identities = 222/708 (31%), Positives = 317/708 (44%), Gaps = 89/708 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LFIDIET SP L GV+ YA+ + L Y+ D PV++ D +P +L Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108 L D V+ A N+ FERI L + +W CT V + GLP S Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCK 164 L L+ + K GK LI +FC S A+ W+ F Y + Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNR 178 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + RL PL E D + LDQ +ND G R+D LV Q R Sbjct: 179 RDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLA 238 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +LT + + L+ +L G L +++ + + L T ++++L R Sbjct: 239 RAQELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALD--TATGQVREVLLLRG 293 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + DGR RG LQFYGA RTGR++G + Q QNLPR + + Sbjct: 294 ELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEAR 353 Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 ++ E + S +R+ I ++G + VVAD + IEARV+AW+AGE Sbjct: 354 SLVRTGDFEAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGETTT 413 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG K M Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A++ L + + + AWRA + Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPS 493 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 V+QLW D+ +IS R+ +V L + I LPS RRL Y K Sbjct: 494 VVQLWADINAAAIE------TISTRQPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547 Query: 577 CSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + + + TYGGKLTENIVQA++RD+L M + G+ IV+ Sbjct: 548 ENRFGGTSITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTYAMHQVAEAGHRIVMH 607 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV E T +V +C LM+ P WA GLPL+A+GY Y K Sbjct: 608 VHDEIVVE---TATATVDEICKLMSTAPDWAAGLPLEADGYACDFYMK 652 >gi|300933386|ref|ZP_07148642.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 686 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 222/708 (31%), Positives = 322/708 (45%), Gaps = 89/708 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LF+D+ET SP L K GV+ YAE + L Y+ D PVK+ D +P++++ Sbjct: 1 MHELFVDLETFSPVNLTKSGVYPYAEHPDFDVLLFGYSIDGNPVKVVDVASSEQLPAEVV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108 + L D V A N+ FER+ L + +W CT V + GLP S Sbjct: 61 EALVDPGVTKWAFNAAFERVCLSAWLARHHPDLIAGRNFLDPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCK 164 L+ L+ + K GK LI RFC + S A+ W+ F Y + Sbjct: 121 LEQVATVLDLP--VRKDSAGKKLITRFCTPARPSVLNQGEMRNLPASDPDGWEQFISYNR 178 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + RL P+ + E + LDQ IND G R+D LV + Q R Sbjct: 179 RDVEVELAIHDRLAGFPMPEAEWATYALDQNINDTGIRLDRVLVDHAVQCDRQHRATTLA 238 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +LT + + L+ +L G L +++ + + L + ++++ R Sbjct: 239 RAQELTG--LENPNSPIQLKDWL-TAHGTPLQSLTKDEVAAALDTATGE--VREVLQLRG 293 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K T+ DGR RG LQFYGA RTGR++G + Q QNLPR + + Sbjct: 294 ELAKSSVKKYETMQHVAGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLCEAR 353 Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + E + S +R+ + ++G + VVAD + IEARV+AW+AGE Sbjct: 354 DLVRTGEFEAVELLYDSVPDTLSQLIRTAFVPADGHRFVVADFSAIEARVIAWLAGEATT 413 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG K M Sbjct: 414 LQAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A++ L + + + AWRA + Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPN 493 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 V+QLW D+ + S R+ V L + + LPS RRL Y K G Sbjct: 494 VVQLWADINAAAIEAI------STRQPTGVGALTFTVESGIMFVRLPSGRRLAYVKPKLG 547 Query: 576 DCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + TA + + TYGGKLTENIVQA++RD+L GM + GY IV+ Sbjct: 548 ENRFGGTAITHEGIATGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGYRIVMH 607 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV E T +V +C LM P WA GLPL A+GY Y K Sbjct: 608 VHDEIVVE---TATATVDEICELMATAPDWAAGLPLAADGYACDFYMK 652 >gi|300933484|ref|ZP_07148740.1| DNA-directed DNA polymerase [Corynebacterium resistens DSM 45100] Length = 653 Score = 685 bits (1767), Expect = 0.0, Method: Composition-based stats. Identities = 224/708 (31%), Positives = 317/708 (44%), Gaps = 89/708 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +LFIDIET SP L GV+ YA+ + L Y+ D PV++ D +P +L Sbjct: 1 MRELFIDIETFSPVNLANSGVYPYADHDGFELLLFGYSIDGGPVEVVDLANGHQLPEKVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID----------IPSKRWICTSVLARTNGLPSS 108 L D V+ A N+ FERI L + +W CT V + GLP S Sbjct: 61 SALVDPLVVKWAFNATFERICLSSWLARQYPELMAGRRFLNPAQWRCTMVWSAYLGLPMS 120 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCK 164 L L+ + K GK LI +FC S A+ W+ F Y + Sbjct: 121 LDQVATVLHLP--VRKDSAGKKLIRQFCTPGTPSVFNLGGMRNPPASDPDGWEQFISYNR 178 Query: 165 RDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 RDVE + RL PL E D + LDQ +ND G R+D LV Q R Sbjct: 179 RDVEVELAIHDRLADFPLPASEWDTYALDQNVNDTGIRLDRVLVDHAVACDRQHRATTLA 238 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +LT + + L+ +L G L +++ + + L T ++++L R Sbjct: 239 RAQELTG--LENPNSPIQLKDWL-AAHGAPLQSLTKDEVAAALD--TATGQVREVLLLRG 293 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + S++ K + DGR RG LQFYGA RTGR++G + Q QNLPR + + Sbjct: 294 ELAKSSVKKYEAMQHVTGRDGRGRGFLQFYGAGRTGRFAGRLVQVQNLPRNYLPDLAEAR 353 Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 ++ + + S +R+ I ++G + VVAD + IEARV+AW+AGE Sbjct: 354 SLVRTGNYDAVELLYDSVPDTLSQLIRTAFIPADGHRFVVADFSAIEARVIAWLAGEATT 413 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 ++AF +G+D+Y T ++ F P+DK + E R GK+ LA GYQGG K M Sbjct: 414 LEAFRDGKDLYCETASRMFGVPVDKHGANAELRQKGKIAVLACGYQGGVGALKAMG---- 469 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A++ L + + + AWRA + Sbjct: 470 ------------------------------------ALRMGLAESELQPLVDAWRAANPN 493 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-G 575 V+QLW D+ + S R +V L + I LPS RRL Y K G Sbjct: 494 VVQLWADINAAAIEAI------STRLPTSVGALTFTVESGIMFIRLPSGRRLAYVKPKLG 547 Query: 576 DCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + TA + + TYGGKLTENIVQA++RD+L GM + G+ IV+ Sbjct: 548 ENRFGGTAITHEGITTGRKWGQLETYGGKLTENIVQAVARDLLTFGMHQVDRAGHRIVMH 607 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV E T +V +C LM P WA GLPL A+GY Y K Sbjct: 608 VHDEIVVE---TATATVDEICKLMAITPDWAAGLPLAADGYACDFYMK 652 >gi|313896425|ref|ZP_07829976.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974849|gb|EFR40313.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 650 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 206/714 (28%), Positives = 319/714 (44%), Gaps = 104/714 (14%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ETRS + K GV+ YAE I L Y+ D V++ D +P ++L Sbjct: 1 MESLSIDLETRSSVDIGKSGVYRYAEAEDFAILLFGYSVDGGAVQVIDIANGEQIPQEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--------------------IDIPSKRWICTSV 98 L DE+V+ A N+ FER+ + L + W CT V Sbjct: 61 DALTDESVIKWAFNANFERVCLSRYLSDLGIALDPFHDNHPLSTECARFLSPHSWRCTMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + GLP SL L E KM EGKALI F ++ T A W L Sbjct: 121 WSAYMGLPLSLAGVGRVLGLEEQ--KMNEGKALIRYFSTPPF----HEPTGA----KWDL 170 Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 F Y +RDVE + KRL P+ + ++LDQ INDRG R+D+ LV ++ + Sbjct: 171 FKSYNRRDVEVEMAIQKRLSKYPVPQSVWEEYVLDQEINDRGIRLDMPLVENAVQIDVRT 230 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 ++KL + + LT + + ++ +L G++ + + ++ ++L+ N+ K+ Sbjct: 231 KEKLTDRLKTLT--SLENPNSVTQMKAWL-KEQGVETESLDKKSVTALLA--NVPDPLKE 285 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ R + S++ K + V SDGR RG QFYGA+RTGR+SG Q QNLP+ + Sbjct: 286 VLELRQQLAKSSVKKYQAMQNTVCSDGRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLA 345 Query: 337 EEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + +++ + + S +R+ I+ G+K +VAD + IEARVL+W+ Sbjct: 346 DLEYARSLVRQGSFAALELLYESVPDVLSQLIRTAFISKEGRKFIVADFSAIEARVLSWL 405 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKT 450 A E W++ FAN DIY T + F+ + K + R GK+ EL+ GY G K Sbjct: 406 AKERWRMDVFANDGDIYCATAGRMFHCNVVKHGENGHLRQYGKLAELSSGYGGSVGALKA 465 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 A++ + + AW Sbjct: 466 FG----------------------------------------ALESGMKEEELNPLVDAW 485 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 RA + ++ W + ++E R + + I LP RRL Y Sbjct: 486 RAANPNIVDFWWAVDRATKDCIKE------RSTKVTHGIRFIYQGSMMFIELPCGRRLAY 539 Query: 571 SDVK-GDCSYLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + G+ + + + + R +YG KL EN+ QAISRDILC M+ T Sbjct: 540 VKPRIGENQFGGESVTYMGLNLSKKWARIESYGPKLVENVTQAISRDILCYAMQ--TLRT 597 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DIV VHDE++ E + S+ +C M + P WA GLPL+A+G+E + Y+K Sbjct: 598 MDIVAHVHDELIIECDE--RVSLSAICEQMARTPPWADGLPLRADGFECQFYQK 649 >gi|328913309|gb|AEB64905.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens LL3] Length = 648 Score = 684 bits (1764), Expect = 0.0, Method: Composition-based stats. Identities = 225/699 (32%), Positives = 332/699 (47%), Gaps = 76/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E I L AYA+D+EP+K+ D + A+P +++ Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEAPDFEILLFAYAFDEEPIKVIDLAQGEALPHEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K +P +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 SE K +EGKALI F CK + + H W+ F YC +DVE R + Sbjct: 121 SEQ--KDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKAYCGQDVEVERSIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 R+ L E++LW LDQ INDRG RID DLV Q + L + +LT + Sbjct: 179 NRISKFELLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ +L G+ + +++ ++ ++ ++ + + L L R + +++ K Sbjct: 237 PNPNSTAQLKTWLEDK-GLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAKTSVKKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++ +T+ E Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEA 354 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 I G + S VR+ I S G + V+D + IEARV+AW+AGE W++ F I Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI 414 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F P++ ++K R GKV ELALGYQGG M Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + KAWR ++ ++Q W D+ Sbjct: 461 --------------------------ALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEA 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577 V+E + + L + + LPS RRL Y+ K + Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549 Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 +Y + + R TYGGKL ENIVQA++RD L + GY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDEAVLDV 609 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P + + ++M + WAKGLPL A+G+ Y+K Sbjct: 610 PRGKN-ELDKVEAIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|298253796|ref|ZP_06977385.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297532132|gb|EFH71105.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 674 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 213/720 (29%), Positives = 323/720 (44%), Gaps = 108/720 (15%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L +D+ET S L K GV+ YAE I L Y+ D V++ D + +P +L Sbjct: 17 LENLSVDLETFSSVNLGKCGVYKYAESEDFEILLFGYSVDGSEVQVVDLAQGETIPEVVL 76 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL----------------GIDIPSKRWICTSVLART 102 L DETV A N+ FERI + L G+ + W CT + + T Sbjct: 77 SALTDETVTKWAFNAQFERICLSRYLRDKGINVNPGQTGKSEGLFLNPSSWHCTMIWSAT 136 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------H 152 GLP SL+N + L + K+ EGK LI FC P + T+ N Sbjct: 137 LGLPMSLENVGIVLGLDKQ--KLTEGKNLIKYFC------LPCNPTKVNGGRTRNKYFHD 188 Query: 153 VQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 + W+ F Y KRDVE + ++L P+ D + LDQ INDRG ID V Sbjct: 189 KEKWEQFKSYNKRDVEVEMSIQEKLSRFPVPDFLWQEFYLDQEINDRGIGIDSLFVESAI 248 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 +L + + L ++ ++T + + +R +L G+++ + + + L + Sbjct: 249 KLDLEVKTHLMSELKRVTG--LENPNSVLQMRSWL-KKHGLEMESLGKKEVAKELK--TV 303 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + +++ R + S++ K + A D R RG +FYGA+RTGR++G + Q QNL Sbjct: 304 GKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFYGANRTGRFAGRLVQLQNL 363 Query: 331 PRQERSEEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 P+ + +++ E + D S +R+ I G K +VAD + IEA Sbjct: 364 PQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAFIPRTGLKFIVADFSAIEA 423 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGG 444 RVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++K V+ R GK+ ELALGY G Sbjct: 424 RVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNGHLRQKGKIAELALGYGGS 483 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 K M A+ L + Sbjct: 484 VGALKAMG----------------------------------------ALDMGLTEDELQ 503 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + AWR+ + V LW D+ V E S+ +V + I LPS Sbjct: 504 PLVDAWRSSNPMVTTLWWDVDRAVKQCVHEHVSVRTH------NIVFTYKSGFLIIKLPS 557 Query: 565 SRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 R L Y + + + T + R +YG K ENI QAI+RDIL M+ Sbjct: 558 KRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKFVENITQAIARDILIYAMQ 617 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 T Y IV VHDE + ET + SV ++C LM + P WA+GL L+A+GYE + Y+K Sbjct: 618 --TLKEYRIVAHVHDEAIIETDKS--VSVQSVCELMGRTPPWAEGLLLRADGYECEFYKK 673 >gi|331085755|ref|ZP_08334838.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330406678|gb|EGG86183.1| hypothetical protein HMPREF0987_01141 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 646 Score = 683 bits (1762), Expect = 0.0, Method: Composition-based stats. Identities = 204/697 (29%), Positives = 322/697 (46%), Gaps = 77/697 (11%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIET S L GV+ Y+ I L AY+ DDE D P + ++ Sbjct: 3 RTLAIDIETYSDVDLISCGVYKYSSSPHFEILLIAYSVDDEETVCIDVANGEEPPKEFIE 62 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D+TV A N+ FER F + W CT+V A LP SL+ L Sbjct: 63 MLFDDTVTKTAFNANFERTCFSNYYHHSFRPEAWRCTAVQATMLALPLSLEGVGAVLGLD 122 Query: 120 EHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + KM EGK LI FC + + + W+ F YC RDV+ +++ + Sbjct: 123 KQ--KMTEGKELIKYFCSPCKATKSNGGRTRNLPKDAPEKWRWFKTYCIRDVDVEKQIRQ 180 Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 RL P+ E++++ LDQ INDRG +D +LV ++ +LT + Sbjct: 181 RLAKFPIPKREQEIYCLDQRINDRGIMVDRNLVNHAVACDLLYKETATARAYELTG--LE 238 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L+++L G+++ +++ T+K + + ++++ RLA+S +++ K Sbjct: 239 NPNSVSQLKLWLKEK-GLEVDSLAKDTVKDLSMKA--EGDVQEVLKLRLATSKTSVKKYE 295 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + +V ++ R+ G LQFYGA+RTGRW+G + Q NLP+ + L + + + R E + Sbjct: 296 AIDRSVCAENRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHLPDLELARALVSEGRYEEV 355 Query: 354 ----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 + S+ +R+ +A G + +++D + IEARVLAW+AGE+W+++ F IY Sbjct: 356 ELFYESTPNVLSELIRTAFVAKPGCRFIISDYSAIEARVLAWLAGEEWRLQVFETHGKIY 415 Query: 410 VTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 + + F+ I++++K R GK+ ELALGY G +M Sbjct: 416 EASASAMFHVAIEEITKTSPLRQKGKISELALGYGGAVGALTSMG--------------- 460 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 A+K L + WR+ + + W + E Sbjct: 461 -------------------------ALKMGLTEEELPGLVSTWRSANPHITAFWWAVDEA 495 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN------ 581 V++ ++ + V R+ + + LPS R+L Y + + Sbjct: 496 AVTAVRD------KKPSKVGRVSFEYKSGILFVTLPSGRKLSYVKPRMMLNKFGREGLTY 549 Query: 582 ---TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + + MR TYG KL ENIVQA SRDIL E M K G+DIV VHDE+V E PD Sbjct: 550 EGIGESKKWMRLETYGPKLVENIVQAASRDILAEAMLRLEKEGFDIVCHVHDEVVLEVPD 609 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV + +M NP W +GLPLKA G+E+ Y+K Sbjct: 610 GKS-SVEEVNEIMAVNPVWTEGLPLKAAGFESPFYKK 645 >gi|118852|sp|P06225|DPOL_BPSP2 RecName: Full=DNA polymerase gi|216151|gb|AAA32600.1| DNA polymerase (gene L; ttg start codon) [Bacillus phage SPO2] gi|579197|emb|CAA25691.1| unnamed protein product [Bacillus phage SPO2] Length = 648 Score = 682 bits (1760), Expect = 0.0, Method: Composition-based stats. Identities = 220/699 (31%), Positives = 329/699 (47%), Gaps = 76/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E I L AYA+DD+PVK+ D + +P ++L Sbjct: 1 MKTLSIDIETFSSVDLLKAGVYAYTEAPDFEILLFAYAFDDDPVKIIDLAQGDTLPHEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K + + +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNLMLLPAQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 S K + GKALI F CK + + + + W+ F YC +DVE R + Sbjct: 121 SAQ--KDKAGKALIRYFSVPCKPTKANGQRVRNLPEHDPEKWEKFKVYCIQDVEVERAIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 R+ + E LW LDQ INDRG RID+DLV Q + L + KLT + Sbjct: 179 NRISKFEPLESEHKLWALDQEINDRGVRIDVDLVKHAIACDEQYQAGLIAEAKKLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ +L G+ + +++ ++ ++ ++N + ++ R + +++ K Sbjct: 237 PNPNSTAQLKKWLEEK-GLTISSLAKDKIEELIENTN-DETVHRVLRLRQEMAKTSVKKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP+ + + + + E Sbjct: 295 LAMEKALCPDNRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIEDLDTARNLLKGGHYEA 354 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 I G + S VR+ I S G + V+D + IEARV+AW+AGE+W+++ F I Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEEWRLEVFNTHGKI 414 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F P++ ++K R GKV ELALGYQGG M Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + KAWR ++ +++ W D+ Sbjct: 461 --------------------------ALNMGLAEGELPELVKAWRTANKKIVKFWYDVEA 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577 V+E + + L + + LPS RRL Y+ K + Sbjct: 495 AAIKAVKERKPVKLQ-----HGLTFLYESGILFVQLPSGRRLAYAKPKLELDERFGKEAL 549 Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 +Y + + R TYGGKL ENIVQA +RD L + GY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQATARDCLAITLMRLDNAGYKTVMHVHDEAVLDV 609 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P + + ++M + SWAKGLPL A+G+ Y+K Sbjct: 610 PRGKN-ELDKVEAIMGEPISWAKGLPLTADGFVTDYYKK 647 >gi|308174986|ref|YP_003921691.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] gi|307607850|emb|CBI44221.1| DNA-dependent DNA polymerase, family A [Bacillus amyloliquefaciens DSM 7] Length = 648 Score = 682 bits (1759), Expect = 0.0, Method: Composition-based stats. Identities = 226/699 (32%), Positives = 331/699 (47%), Gaps = 76/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY E I L AYA+D+EP+K+ D + A+P ++L Sbjct: 1 MKTLSIDIETFSSVDLLKCGVYAYTEASDFEILLFAYAFDEEPIKVIDLAQGEALPHEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L V+ A+N+ FER K +P +W CT+V A T GLP +L AL Sbjct: 61 VALTSSKVIKTAYNANFERTCIAKHFNTMLPPTQWRCTAVHATTLGLPGNLDGVAKALKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 SE K +EGKALI F CK + + H W+ F YC +DVE R + Sbjct: 121 SEQ--KDKEGKALIRYFSVPCKPTKANGQRVRNLPEHAPDKWEKFKTYCGQDVEVERSIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 R+ E++LW LDQ INDRG RID DLV Q + L + +LT + Sbjct: 179 NRISKFEPLKAEQELWALDQDINDRGVRIDADLVKHAIACDEQYQAGLMVEAKELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ +L G+ + +++ ++ ++ ++ + + L L R + +++ K Sbjct: 237 PNPNSTAQLKKWLEDK-GLSVSSLAKDKIEELIEKTDDASVHRVLRL-RQEMAKTSVKKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +A+ D R+RG LQFYGASRTGRW+G + Q QNLP+ + ++ +T+ E Sbjct: 295 LAMEKALCPDSRVRGLLQFYGASRTGRWAGRLVQVQNLPQNKIADLDTARTLLKGGHYEA 354 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 I G + S VR+ I S G + V+D + IEARV+AW+AGE W++ F I Sbjct: 355 IELLYGQVPFVLSQLVRTAFIPSEGNEFYVSDFSAIEARVIAWLAGEGWRLDVFNTHGKI 414 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A+ F P++ ++K R GKV ELALGYQGG M Sbjct: 415 YEASAAQMFKVPVESITKGSPLRQKGKVAELALGYQGGKGALIQMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + KAWR ++ ++Q W D+ Sbjct: 461 --------------------------ALTMGLDEDELPGLVKAWRTANKKIVQFWYDVEA 494 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC--------- 577 V+E + + L + + LPS RRL Y+ K + Sbjct: 495 AAVKAVKERKPVKIQ-----HGLTFLCESGILFVQLPSGRRLAYAKPKLEIDDRFGKEAL 549 Query: 578 SYLNT-ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 +Y + + R TYGGKL ENIVQA++RD L + GY V+ VHDE V + Sbjct: 550 TYEGKLESGKWGRLNTYGGKLVENIVQAVARDCLAVTLIRLDDAGYKTVMHVHDETVLDV 609 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P + + S+M + WAKGLPL A+G+ Y+K Sbjct: 610 PRGKN-ELDKVESIMGEPIPWAKGLPLTADGFITDYYKK 647 >gi|153814242|ref|ZP_01966910.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] gi|145848638|gb|EDK25556.1| hypothetical protein RUMTOR_00451 [Ruminococcus torques ATCC 27756] Length = 644 Score = 681 bits (1757), Expect = 0.0, Method: Composition-based stats. Identities = 204/698 (29%), Positives = 335/698 (47%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP K+ D MP +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTKIIDIASGQTMPEEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D++V+ A N+ FER + G+ + + W CT+V A LP SL+ ALN Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174 KM EGK LI FC + ++ + W+LF YC RDV+ +++ Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P+ D E++L+ +DQ INDRG +D +L+ ++ + +++ + Sbjct: 179 NKLAKFPIPDREQELYCMDQRINDRGIMVDRELISNAVACDLLYKEAASKRAYEISG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI++ +++ ++ ++ + +++ RL+ S +++ K Sbjct: 237 ENPNSVSQLKDWLNEK-GIEVDSLAKAAVEELVEKTEGE--VSEMMKLRLSMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L ++I R + Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDL 353 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F I Sbjct: 354 VELLYDSTPEVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T +K F+ PI++++K RA GKV LA Y G +M + Sbjct: 414 YEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGAL------------ 461 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 F +++L G + ++WR + ++ W ++ Sbjct: 462 ------------------------NFVEEEELKG-----LVQSWRTANPHIVNYWYEIDG 492 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 V+E R++ V R+ + + I LPS R L Y + + + + Sbjct: 493 AVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVS 546 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R +YG K ENIVQA +RD+L E M K G+DIV +HDE+V E P Sbjct: 547 YEGVGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVP 606 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 607 EGTS-SVEEVNEIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|254975142|ref|ZP_05271614.1| DNA polymerase [Clostridium difficile QCD-66c26] gi|255314269|ref|ZP_05355852.1| DNA polymerase [Clostridium difficile QCD-76w55] gi|255516949|ref|ZP_05384625.1| DNA polymerase [Clostridium difficile QCD-97b34] gi|255650051|ref|ZP_05396953.1| DNA polymerase [Clostridium difficile QCD-37x79] gi|260686788|ref|YP_003217921.1| dna-directed dna polymerase i [Clostridium difficile R20291] gi|306519586|ref|ZP_07405933.1| dna-directed dna polymerase i [Clostridium difficile QCD-32g58] gi|260212804|emb|CBE03971.1| dna-directed dna polymerase i [Clostridium difficile R20291] Length = 652 Score = 681 bits (1756), Expect = 0.0, Method: Composition-based stats. Identities = 227/700 (32%), Positives = 335/700 (47%), Gaps = 74/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +E KM+EGKALI FCK + + ++ W F EYCK+DV RE+ Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 175 KRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L ER+ LW LDQ IND G ++D +L+ E + +KL ++ +K+T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G ++ +++ ++ IL + + + L L +L S ++I K Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKL-MSKTSIKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + + Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 I + S +R+ I S G + +V+D + IEARV+AW AGE W++ F + I Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWFAGEKWRLDVFNSHGKI 417 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F PI+ + K R GK+ ELALGY G +M + ++ Q Sbjct: 418 YEASASHMFKVPIESIKKGDPLRQKGKISELALGYGGSIGALTSMGAIKMGLDEEELQ-- 475 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 +T+ + + W D+ + A+KD+ I +K Sbjct: 476 PLVTTWRNANPNITKFWWDVDKAAKKAIKDRTIVKLQHGIK------------------- 516 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577 + + I LPS RRL Y K + Sbjct: 517 ------------------------FIYNPGVLFIELPSGRRLSYLRPKIEPHTTFSGDKI 552 Query: 578 SYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +Y + Q R TYG KL ENIVQA +RD L E M N T GY IV+ VHDE+V + Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|154504839|ref|ZP_02041577.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] gi|153794722|gb|EDN77142.1| hypothetical protein RUMGNA_02349 [Ruminococcus gnavus ATCC 29149] Length = 644 Score = 680 bits (1755), Expect = 0.0, Method: Composition-based stats. Identities = 202/698 (28%), Positives = 335/698 (47%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP ++ D +P +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTQIIDLASGEKIPDEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 +YL D++V+ A+N+ FER + G+ + + W CT V A LP SL+ ALN Sbjct: 61 EYLTDDSVIKTAYNAAFERNCINRFFGLSLKPEGWRCTLVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174 KM EGK LI FC + ++ + W+LF YC RDV+ +++ Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCTRDVDVEKQIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P+ D E+ L+ +DQ INDRG +D +L+ ++ + + +++ + Sbjct: 179 NKLAKFPIPDREQKLYCMDQRINDRGIMVDQELIGHAVACDLLYKETVTKKAYEISG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI++ +++ ++ ++ ++ +++ RLA S +++ K Sbjct: 237 ENPNSVSQLKDWLNEK-GIEVDSLAKAAVEELVENT--QGDVAEMMKLRLAMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L +++ R + Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSLVKEGRYDL 353 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F I Sbjct: 354 VELLYDSTPDVLSELIRTAFVARPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T +K F+ PI +++K RA GKV LA Y G +M + Sbjct: 414 YEQTASKMFHIPIGEITKGSPYRARGKVASLACQYGGAEGALISMGAL------------ 461 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 F +++L G + ++WR + ++ W ++ Sbjct: 462 ------------------------NFVEEEELKG-----LVQSWRTANPHIVNYWYEIDG 492 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 V+E R++ V + + + I LPS R L Y + + + + Sbjct: 493 AVKAAVKE------RKMTKVGMVTVYYQSGMLKITLPSGRVLSYVRPRMTVNRFGSESVS 546 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R +YG K ENIVQA +RD+L E M K G+DIV +HDE+V E P Sbjct: 547 YEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLRLEKKGFDIVCHIHDEVVLEVP 606 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 607 EGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|325690425|gb|EGD32428.1| prophage LambdaSa04 DNA-directed DNA polymerase [Streptococcus sanguinis SK115] Length = 645 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 218/698 (31%), Positives = 334/698 (47%), Gaps = 77/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+ Y + I L AY D+E ++ D + +P +L Sbjct: 1 MRTLSIDIETYSDVDLTKCGVYRYVDSPQFEILLFAYKIDEENTQIVDLAQGEELPKGIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 LRD+ V+ A N+ FER+ K L + ++ W CT+V A + GLP SL+ LN Sbjct: 61 SALRDDAVVKTAFNANFERVCLSKYLKQKLSARSWSCTAVQAASLGLPLSLEGVGRVLNI 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 E KM+EG+ LI F C+ +I + + +H ++ W+LF YCKRDVE + + Sbjct: 121 EEQ--KMKEGQRLIRYFCLPCRPTIANGMRERNWPHHALEDWELFKRYCKRDVEVEQAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL PL + E+ L+ LDQ INDRG +D +LV + ++++ + +L+ + Sbjct: 179 KRLSNYPLLESEQLLYQLDQAINDRGIAVDQELVSQAILGDLSYKEQVTQRAYELSG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+ + + + + L + L +++ RL S +++ K Sbjct: 237 DNPNSVSQLKGWL-ENQGVFMDSLGKKDVAKQLKEVDGEIL--EMLKLRLLMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + V SD R+ G LQFYGA+RTGRW+G + Q QNLP+ + + L +T+ + + Sbjct: 294 QAMERCVCSDDRVHGLLQFYGANRTGRWAGRLVQVQNLPQNKLKDLDLARTLVKDGQLKA 353 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + + S+ +R+ + +G + +VAD A IEARVLAW++GE W+++ F G DI Sbjct: 354 LDLLYDNVPNVLSELIRTAFVPKSGHQFIVADFAAIEARVLAWLSGETWRLEVFEQGGDI 413 Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + A F P++K V+ R GK+ ELALGY G K M Sbjct: 414 YCASAASMFGVPVEKHGVNGHLRQKGKIAELALGYGGSVGALKAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + + WR + ++ W + + Sbjct: 460 --------------------------ALDMGLDEEELQPLVNQWRMANPHIVAFWWVIDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581 V + R V L++ I LPS R+L Y + + + Sbjct: 494 ASKEVYE------TREPQKVGNLLLYYQAGMFFIALPSGRKLAYVKPRMELNAFGKPGLT 547 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R TYG KL ENIVQ I+RD+L GM K DIVL VHDE V E Sbjct: 548 YEGIGENKKWSRIDTYGPKLVENIVQGIARDLLAHGMMQLQKQELDIVLHVHDEAVVEVK 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV +C L P WA+GLPL+A+GY + Y+K Sbjct: 608 EGEA-SVEEVCQLFATLPDWAEGLPLRADGYACQFYQK 644 >gi|304436359|ref|ZP_07396335.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370628|gb|EFM24277.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 641 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 199/705 (28%), Positives = 317/705 (44%), Gaps = 95/705 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ETRS + + GV+ Y AE I L Y+ D V++ D +P ++L Sbjct: 1 MKSLSVDLETRSSVDIGQSGVYRYTEAEDFAILLFGYSVDGGAVQVIDLVRGERIPQEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG-----------IDIPSKRWICTSVLARTNGLPS 107 L D++V+ A N+ FER+ + L + + W CT V + GLP Sbjct: 61 DALADDSVIKWAFNANFERVCLSRYLSDLGMLHTTERAHFLSPRSWRCTMVWSAYMGLPL 120 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 SL L E KM EGKALI F P + W+LF Y +RDV Sbjct: 121 SLAVVARVLGLEEQ--KMTEGKALIRYFSTPPFHEP--------TGEKWELFKSYNRRDV 170 Query: 168 EATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E + +RL P+ + ++LDQ INDRG +D+ V ++ A ++K+ + + Sbjct: 171 EVEMAIQQRLFKYPVPQSVWEEYVLDQEINDRGICLDMPFVENAVKIDAHTKEKMTDRLK 230 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 LT + + ++ +L G++ + + T+ ++L+ N++ L K+++ R + Sbjct: 231 TLTG--LENPNSVAQMKAWL-KEQGVETESLDKKTVAALLT--NVSALLKEVLELRQQLA 285 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 S++ K + V +D R RG QFYGA+RTGR+SG Q QNLP+ + +++ Sbjct: 286 KSSVKKYQAMQNTVCADNRARGMFQFYGANRTGRFSGRHIQLQNLPQNHLANLEYARSLV 345 Query: 346 ALNRGETIADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + + S +R+ I G+K +VAD + IEARVL+W+A E W++ Sbjct: 346 RQGNFAALELLYESVSDVLSQLIRTAFIPKEGRKFIVADFSAIEARVLSWLAKERWRMDV 405 Query: 402 FANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 FAN DIY T + F+ + K + R GK ELA GY G K Sbjct: 406 FANDGDIYCATAGRMFHCNVVKHGENGHLRQKGKQAELACGYGGSVGALKAFG------- 458 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A++ + + + AWR + ++ Sbjct: 459 ---------------------------------ALESGMKEDELKPLVDAWRTANPNIVD 485 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCS 578 W + ++E R + + + I LPS RRL Y + G+ Sbjct: 486 FWWAVDRAAKDCIKE------RSITGTHGIKFIYQSGMMFIELPSGRRLAYVKPRIGENQ 539 Query: 579 YLNTA--------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + + + + R +YG KL ENI QAISRD+LC M+ T DIV VHD Sbjct: 540 FGGESITYMGLDLSKKWARIESYGPKLVENITQAISRDLLCYAMQ--TLRSMDIVAHVHD 597 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E++ E + S+ + C M + P WA+GL L+A+G+E + Y+K Sbjct: 598 ELIIECDE--RVSLSSACEQMARTPLWAEGLLLRADGFECQFYQK 640 >gi|320530602|ref|ZP_08031654.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320137129|gb|EFW29059.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 653 Score = 679 bits (1752), Expect = 0.0, Method: Composition-based stats. Identities = 223/699 (31%), Positives = 330/699 (47%), Gaps = 76/699 (10%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID+ET S + VG + YAE A I L AYAWDD PV++ D T + +P+D+L L D Sbjct: 3 LSIDLETYSALDIKTVGGYRYAENAEILLFAYAWDDTPVQIVDLTAEETIPADVLSALTD 62 Query: 64 ETVMCVAHNSLFERILFKKTLGID------IPSKRWICTSVLARTNGLPSSLKNACLALN 117 +M A N+ FER + L + + W CT V A T GLP SL L Sbjct: 63 NDIMKCAFNAQFERTVLSHYLHKEGEPFAFLDPAGWSCTMVHALTLGLPGSLAEVSKTLK 122 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSP----PYDCTRANHVQAWQLFGEYCKRDVEATREL 173 E KM G LI FCK + + + W F YC RDVEA RE+ Sbjct: 123 LGEEKEKMSVGTQLITYFCKPCKPTKSNGGRTRNLPNDAPEKWATFKAYCVRDVEAEREV 182 Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +RL P+ + ER LW LDQ INDRG RID L + R ++ + L+ Sbjct: 183 RRRLSGYPVPETERALWALDQRINDRGVRIDEILAQNAIAFDSAFRAEVTAEASALSG-- 240 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + L+ +++ G + +++ T+ ++ + ++ K ++ ++ S +++ K Sbjct: 241 LENPNSGEQLKHWIYEQEGARPLSLTKETIPELIETAK-SETVKTMLQLKMLLSKTSVKK 299 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + +A SDGR G LQFYGA+RTGRW+G + Q QNLPR +E + + + Sbjct: 300 YEAMVQAQCSDGRAHGLLQFYGANRTGRWAGRLVQVQNLPRNTMAELDDARALLRCGDTD 359 Query: 352 T----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +P + S +R+ I + G + VAD + IEARV+AW+AGE W++ FA+G D Sbjct: 360 ALEMLFDNPPDVLSQLIRTAFIPAVGMRFTVADFSAIEARVIAWLAGEKWRMDVFADGGD 419 Query: 408 IYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 IY + +K F+ P++K V+ R GKV ELALGY GG K M + Sbjct: 420 IYCASASKMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVSALKRMGAD----------- 468 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 K L E +K++WR +++LW D Sbjct: 469 -----------------------------KLGLTDAELEEIKQSWRKASPRIVRLWSDFE 499 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD--------- 576 V+E ++S + + + + I LPS R L Y + + Sbjct: 500 SAALEAVRERSTVSLQ-----HGIKLECRSGILFIRLPSGRSLAYVKPRIEYEESFDREG 554 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 +Y ++RTYGG+L EN +QAI+RD L M GY IV+ +HDE+V ET Sbjct: 555 LTYYGRDVGGWGKQRTYGGRLVENAIQAIARDCLAVAMTRLEAAGYPIVMHIHDEVVVET 614 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P + +C +M+K WA GL L A+GY Y+K Sbjct: 615 PR-SVDCLADVCEIMSKPVDWAPGLVLTADGYTTNYYKK 652 >gi|255092532|ref|ZP_05322010.1| DNA polymerase [Clostridium difficile CIP 107932] gi|260683192|ref|YP_003214477.1| dna-directed dna polymerase i [Clostridium difficile CD196] gi|260209355|emb|CBA62784.1| dna-directed dna polymerase i [Clostridium difficile CD196] Length = 652 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 226/700 (32%), Positives = 338/700 (48%), Gaps = 74/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +E KM+EGKALI FCK + + ++ W F EYCK+DV RE+ Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 175 KRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L ER+ LW LDQ IND G ++D +L+ E + +KL ++ +K+T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G ++ +++ ++ IL + + + L L +L S ++I K Sbjct: 239 NNPNSPAQLKKWLSDKVGFEITSLTKESIPEILKQVDDENVVRILELRKL-MSKTSIKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + + Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 I + S +R+ I S G + +V+D + IEARV+AW+AGE W++ F + I Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKI 417 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F PI+ + K E R GK+ EL+ GY G +M + ++ Q + Sbjct: 418 YEASASQMFKIPIENIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEELQPI 477 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + W D+ + A+KD+ I +K Sbjct: 478 --VTAWRNANPNITKFWWDVDKAAKKAIKDRTIVEIQHGIK------------------- 516 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577 + + I LPSSRRL Y K + Sbjct: 517 ------------------------FIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKI 552 Query: 578 SYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +Y + Q R TYG KL ENIVQA +RD L E M N T GY IV+ VHDE+V + Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|303239094|ref|ZP_07325624.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] gi|302593432|gb|EFL63150.1| DNA-directed DNA polymerase [Acetivibrio cellulolyticus CD2] Length = 649 Score = 679 bits (1751), Expect = 0.0, Method: Composition-based stats. Identities = 223/702 (31%), Positives = 333/702 (47%), Gaps = 81/702 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L GV+ Y A I L YAWDD+PV+L D +P ++ Sbjct: 1 MRTLAIDIETFSSVDLTSCGVYTYTAAPDFQILLFGYAWDDDPVELIDLACGERLPDAIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + V+ A N+ FERI K L + + W CT++ A GLP L AL Sbjct: 61 NAIESPEVIKTAFNAGFERICLSKHLNKHLKADSWRCTAIQAAMLGLPLHLDGVGTALKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K GK LI F CK + + +H + WQ F +YC RDVE RE+ Sbjct: 121 --KVQKDRAGKDLIRYFSIPCKSTKSNGGRTRNLPHHAPEKWQKFKDYCVRDVEVEREVR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ P+ + E LWLLDQ IND G +D+ LV + + Q +L+ + LT + Sbjct: 179 RKIERYPIPEKELKLWLLDQKINDTGVLVDMALVNQAVKCDTQYSSRLEVEAKTLTK--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +S+ ++++L+ ++ + L+ R + S+I K Sbjct: 237 DNPNSVAQLKEWL-KEQGLEVESLSKQAVQNLLTDADGE--IERLLTLRQEMAKSSIAKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +V D R+RG QFYGA+RTGRW+G +FQ QNLP+ + + + + R + Sbjct: 294 AAVQRSVCPDSRVRGLFQFYGANRTGRWAGRIFQIQNLPQNHMKDLEIARMLVKQGRFKE 353 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S+ +R+ +I G + +VAD + IEARVLAW+A E W + F I Sbjct: 354 LELLYESVPIVLSELIRTVLIPEQGCRFIVADFSAIEARVLAWLANEAWVLDTFKGHGKI 413 Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y T ++ F P++K++K E RA GKV LA GYQGG K M + Sbjct: 414 YEQTASRMFGVPVEKIAKGNPEYELRAKGKVAVLACGYQGGVNALKAMGAD--------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 K L T + + +AWR+ +Q +++ W D Sbjct: 465 -------------------------------KMGLSDTELDDIVRAWRSANQRIVRFWYD 493 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------- 576 + + V+E R V L + + I LPS RRL Y K + Sbjct: 494 VEKAAVLAVRE------REPQRVGILRFKVENGILFITLPSGRRLAYIRPKIEKDLRFDK 547 Query: 577 --CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 +Y Q R++TYGG+L ENIVQ +RD L E M GY IV VHDEI+ Sbjct: 548 DGLTYEGLGINKQWWRQKTYGGRLVENIVQGAARDCLAEAMLRVDAKGYKIVGHVHDEII 607 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +E S+ LC +M + WA GLPL+A+G+E Y+K Sbjct: 608 TEMRKGQ-GSLEELCGIMGQEIPWALGLPLRADGFETMFYKK 648 >gi|302873662|ref|YP_003842295.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|307686614|ref|ZP_07629060.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] gi|302576519|gb|ADL50531.1| DNA-directed DNA polymerase [Clostridium cellulovorans 743B] Length = 645 Score = 678 bits (1750), Expect = 0.0, Method: Composition-based stats. Identities = 219/698 (31%), Positives = 342/698 (48%), Gaps = 77/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S L K GV+AY I L AYA+D + VK+ D +P++++ Sbjct: 1 MQTLSIDIETFSDVDLIKSGVYAYTASPNFEILLFAYAFDSDEVKIIDFASGEELPAEII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L +E ++ A N+ FERI + L + + W CT+V A T G P SL L Sbjct: 61 EALLNENIIKSAFNAQFERICLSRHLNKKLTANAWQCTAVQAATLGFPLSLDGVAQVLGL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 +E KM+EGK LI F CK + + H + W F +YC RDVE R + Sbjct: 121 TEQ--KMKEGKELIRYFSIPCKPTRVNEGRTRNLPQHSSEKWNDFKKYCIRDVEVERAIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L P+S+ E+ ++LD INDRG +DLDLV + E ++ + +LT + Sbjct: 179 KKLSRYPISENEQRNYILDHEINDRGVFVDLDLVARAMECDRLHKEDTFTEAQRLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +S+ + + ++ + L+ RL + ++I K Sbjct: 237 DNPNSVAQLKQWLIE-NGVEVDSLSKKAVSDLAKEADGE--VERLLNLRLQLAKTSIKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + AV D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + +T Sbjct: 294 EAIERAVCPDKRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLKDLTLARNLVKSGDFDT 353 Query: 353 ----IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S+ +R+ I + + +VAD + IEARV+AW+AGE W++ FA I Sbjct: 354 LALLFESVPHVLSELIRTAFIPKSNHRFIVADFSAIEARVIAWLAGEKWRMDVFATHGKI 413 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F PI++++K R GK+ ELALGY G M Sbjct: 414 YEASASQMFKVPIEEITKTSALRQKGKISELALGYGGSVGALTAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + AWR + + +LW D+ + Sbjct: 460 --------------------------ALDMGVAEDELQGLVTAWRQANPNITKLWWDIDK 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN----- 581 V++ ++ V ++ ++ + I LPS RRL Y + + + Sbjct: 494 AAIKAVKKKTTVM------VGKIKLQYESGIMFITLPSGRRLSYIKPRIEPNKFERDAVT 547 Query: 582 ----TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 AT + R TYG KL ENIVQAI+RD+L E M +NGY+IV+ +HDEIV E P Sbjct: 548 YEGIGATKKWERIETYGPKLVENIVQAIARDLLAEAMLRVAENGYEIVMHIHDEIVIEAP 607 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + S+ +C +M P+WA+ LPL+A+G+E + YRK Sbjct: 608 LN-FGSLKDVCEVMAIAPTWAESLPLRADGFECEYYRK 644 >gi|218133416|ref|ZP_03462220.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] gi|217990791|gb|EEC56797.1| hypothetical protein BACPEC_01281 [Bacteroides pectinophilus ATCC 43243] Length = 644 Score = 677 bits (1747), Expect = 0.0, Method: Composition-based stats. Identities = 203/698 (29%), Positives = 335/698 (47%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP GV YA EQ I L AY+ +DEP ++ D MP +++ Sbjct: 1 MDTLAIDIETYSDVSLPDCGVHRYAASEQFEILLFAYSLNDEPTRIIDLASGQTMPDEIM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D++V+ A N+ FER + G+ + + W CT+V A LP SL+ ALN Sbjct: 61 ECLMDDSVVKTAFNAAFERNCINRFFGLSLKPEGWRCTAVQASMLSLPLSLEGVGEALNL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174 KM EGK LI FC + ++ + W+LF YC RDV+ +++ Sbjct: 121 --DKKKMSEGKDLIRYFCMPCKPTKANGGRTRNLPSDAPEKWELFKTYCIRDVDVEKQIR 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L P+ D E++L+ +DQ INDRG +D +L+ ++ + +++ + Sbjct: 179 NKLAKFPIPDREQELYCMDQRINDRGIMVDRELISHAVTCDLLYKEAASKRAYEISG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L GI++ +++ ++ ++ + +++ RL+ S +++ K Sbjct: 237 ENPNSVSQLKEWLNEK-GIEVDSLAKAAVEELVEKTEGE--ISEMMKLRLSMSKTSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + +V DGR+ G LQFYGA+RTGRW+G + Q NLP+ + L ++I R + Sbjct: 294 EAMERSVCPDGRVHGLLQFYGANRTGRWAGRLVQIHNLPQNHMEDLELARSIVKEGRYDL 353 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S+ +R+ +A G + +V+D + IEARV+ ++AGE W ++ F I Sbjct: 354 VELLYDSTPDVLSELIRTAFVAKPGCRFIVSDFSAIEARVMGYLAGEGWVMEEFRGAGKI 413 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y T +K F+ PI++++K RA GKV LA Y G +M + Sbjct: 414 YEQTASKMFHIPIEEITKGSPYRARGKVASLACQYGGAEGALVSMGAL------------ 461 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 F +++L G + ++WR + ++ W ++ Sbjct: 462 ------------------------NFVEEEELKG-----LVQSWRTANPHIVNYWYEIDG 492 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT-- 584 V+E R++ V R+ + + I LPS R L Y + + + + Sbjct: 493 AVKAAVKE------RKMTTVGRVTVYYQSGMLKIALPSGRVLSYVRPRMTVNRFGSESVS 546 Query: 585 -------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + R +YG K ENIVQA +RD+L E M K G+DIV +HDE+V E P Sbjct: 547 YEGIGTNRKWTRIESYGAKFCENIVQATARDVLAEAMLCLEKKGFDIVCHIHDEVVLEVP 606 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV + +M P W +GLPLKA G+E+ Y+K Sbjct: 607 EGTS-SVEEVNGIMAVCPDWCEGLPLKAAGFESPFYKK 643 >gi|153581904|emb|CAM34262.1| phage polymerase [Streptococcus pyogenes] gi|262113717|emb|CAR95384.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 651 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE + L A + D+ PV ++D + +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDF-NKEKLPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FERI L + W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L + KM EG LI FC K + + +H W F +Y +R Sbjct: 122 EGVGTVLKLKD--KKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPDKWSAFIDYNRR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +RL P+ D D + DQ INDRG ID+D V ++ + + K+ E+ Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGLGIDVDFVKAAIKIDRESKAKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + + +L G+ + + +K +L + + ++ R Sbjct: 240 LKALTG--LENPNSVLQMIGWLRE-HGVTTDSLDKKAVKGLLK--TVDETTAQVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARE 354 Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E I D S +R+ + S GKK +V D + IEARVL+ +AGE W+ K Sbjct: 355 LFGTGDLEATELIYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + E R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------ALDMGLTEEELQPLVNSWRLANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576 W D+ V+E S + + + I LPS R+L Y + Sbjct: 495 LYWWDVDNAVKTAVKELIPTSTHGIQ------FEVKRGILFITLPSGRKLAYIKPRIGDN 548 Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y T T++ R +YG K ENIVQAISRDIL MK + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--KNFKIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECPIEQK--LDEVASLMGIAPDWLSDINLRADGYECFFYQK 650 >gi|330862112|emb|CBX72276.1| putative DNA polymerase [Yersinia enterocolitica W22703] Length = 699 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 262/703 (37%), Positives = 370/703 (52%), Gaps = 36/703 (5%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 KL+ D ET P+ K G AYAE + + YA +D+PV WD T + MP DL YL Sbjct: 3 KKLWFDSETFCETPI-KNGTHAYAEHVEVMIITYALNDDPVSEWDITSGAKMPEDLKAYL 61 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIP--SKRWICTSVLARTNGLPSSLKNACLALNFS 119 +D ++ A NS F+R + + + I +RW T V A +GLP L C L + Sbjct: 62 QDPSIEIYAQNSHFDRTMMRHDMPSVIAGGIERWRDTMVKALAHGLPGGLGVLCEILGIT 121 Query: 120 EHLTKMEEGKALIARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + K +EGKALI FCK +S + T H + W+ F +Y D+EA R + K+L Sbjct: 122 QDKAKDKEGKALIQLFCKPRAKNSTIHRATSKTHPEEWKRFLKYAGNDIEAMRAIDKKLP 181 Query: 179 PLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW DQ INDRG ++D L + E+K L + LTD ++++ Sbjct: 182 VWNYQGKELALWHFDQLINDRGVQMDTVLAEAAVTAVVDEQKLLAKRTQNLTDNEVQAAT 241 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q AL ++ G+DL DM + TL+ ++ + + ++L+ RL +S ++ K TL Sbjct: 242 QRDALLRHIVESFGVDLPDMQKSTLERRIADPELPSVLRELLAIRLQASTTSTSKYKTLL 301 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353 + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + I+AL G Sbjct: 302 KGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLDQETIDTGIEALKAGCADLLF 361 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF----------- 402 + + L S +R CI+A GKKLVV+DL+ IE RVLAW+AGE+WK++AF Sbjct: 362 DNVMELISSALRGCIVAPKGKKLVVSDLSNIEGRVLAWLAGEEWKLEAFRDYDTIIGYDE 421 Query: 403 -----ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 G D+Y YA+AFN D V+K QR IGKVMEL LG+ GG F T A GL Sbjct: 422 GGEALREGPDLYKLAYARAFNISPDDVTKLQRQIGKVMELGLGFGGGVAAFLTFALVYGL 481 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 DL + + +A+S + Q F + +++ AC+ +K+ WR H Sbjct: 482 DLDELANAALPNVPTSIQREAQSWYQASVKQKRTFGLSEQVF-IACDSLKRMWRNAHPET 540 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD- 576 + W ++ + R + RR + I LPS R + Y ++ + Sbjct: 541 VSFWSEIENTVRRAIINPKQTFVCRKLKI-----RRDGSWLRIQLPSGRSVCYPGIRIEG 595 Query: 577 --CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 SY+ NT + + R +TYGGKL EN QA +RD++ M GY+I LTVHDE+ Sbjct: 596 DKISYMGVNTYSRKWQRLKTYGGKLAENATQAAARDVMANNMPLIEARGYEITLTVHDEV 655 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++E PDT F+ L L+ NP WA LPL A G+EA YRK Sbjct: 656 LTEAPDTDAFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 698 >gi|255306559|ref|ZP_05350730.1| DNA polymerase [Clostridium difficile ATCC 43255] Length = 652 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 225/700 (32%), Positives = 337/700 (48%), Gaps = 74/700 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + KVGV+ Y + I L AYA+D+E VK+ D +P +++ Sbjct: 1 MRTLSIDIETYSDLDIKKVGVYRYVDSANFEILLFAYAFDNEEVKVIDLVNDEELPKEVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A N+ FER K L I++ W CT + A T GLP SL + AL F Sbjct: 61 EALNDNKVIKSAFNANFERTAISKFLNINLKPNEWSCTMIKALTLGLPGSLDSVSKALKF 120 Query: 119 SEHLTKMEEGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +E KM+EGKALI FCK + + ++ W F EYCK+DV RE+ Sbjct: 121 NEDKQKMKEGKALIQYFCKPCKATKVNKGRTRNLPIHDMEKWNKFKEYCKQDVVVEREIR 180 Query: 175 KRLIPLSDGERD--LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L ER+ LW LDQ IND G ++D +L+ E + +KL ++ +K+T + Sbjct: 181 NKLSKYKTTEREIKLWYLDQRINDTGIKVDTELIENAIECDKRYTEKLTKEAIKITG--L 238 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L ++ +++ ++ IL + + + L L +L S ++I K Sbjct: 239 NNPNSPAQLKKWLSDKVSFEITSLTKESIPEILKQVDDENVVRTLELRKL-MSKTSIKKY 297 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A +D R+RG LQFYGA+RTGRW+G + Q QNLP+ + L + + + Sbjct: 298 EAMKLAKGNDNRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHIEDLDLARNLLKEGDFDL 357 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 I + S +R+ I S G + +V+D + IEARV+AW+AGE W++ F + I Sbjct: 358 IELLYDSVPDVLSQLIRTAFIPSEGHRFIVSDFSAIEARVIAWLAGEKWRLDVFNSHGKI 417 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F PI+ + K E R GK+ EL+ GY G +M + ++ Q + Sbjct: 418 YEASASQMFKVPIESIKKGSELRQKGKLAELSNGYGGSVGALISMGAIKMGLKEEELQPI 477 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + + W D+ + A+KD+ I +K Sbjct: 478 --VTAWRNANPNITKFWWDVDKAAKKAIKDRTIVEIQHGIK------------------- 516 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------C 577 + + I LPSSRRL Y K + Sbjct: 517 ------------------------FIYNPGVLFIELPSSRRLSYLRPKIEPHTTFSGDKI 552 Query: 578 SYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 +Y + Q R TYG KL ENIVQA +RD L E M N T GY IV+ VHDE+V + Sbjct: 553 TYEGMEQTSKQWKRIDTYGPKLVENIVQATARDCLREAMFNVTDAGYSIVMHVHDELVID 612 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ + S+M K SWAKGLPLKA+GYE Y+K Sbjct: 613 VDK-KGGSLEEVNSIMGKEISWAKGLPLKADGYECDYYKK 651 >gi|226949733|ref|YP_002804824.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] gi|226841086|gb|ACO83752.1| DNA polymerase [Clostridium botulinum A2 str. Kyoto] Length = 655 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 226/704 (32%), Positives = 333/704 (47%), Gaps = 79/704 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L ID+ET S + G + Y E I L AYA++DEPV++ D T+ A+P ++ Sbjct: 1 MTTLAIDVETYSSIDIKTSGAYKYCEAPDFEILLFAYAFNDEPVQIVDFTQHEALPQRVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 L D V+ A N+ FER K + + P +W CT + A T GLPSSL AL Sbjct: 61 DALYDPDVIKTAFNANFERSAIKFGVSSLPCPPGQWECTMIKALTLGLPSSLDMVGKALK 120 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYD----CTRANHVQAWQLFGEYCKRDVEATREL 173 E KM+EGKALI FCK + D + ++ W+ F EYCKRDVE RE+ Sbjct: 121 LEEDKQKMKEGKALIQYFCKPCKPTKTNDKRTRNLPKHDMEKWETFKEYCKRDVEVEREI 180 Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L E+ LW LDQ INDRG DL L+ + E ++L + +KLT Sbjct: 181 RNLLNRYETKAEEQKLWQLDQHINDRGIDTDLILIKQAIECDTNYTERLTKAAIKLTG-- 238 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS---NITQLAKDLILNRLASSGSA 288 + + ++ ++ G ++ +++ ++ ++ + N +++ K L L R + ++ Sbjct: 239 LENPNSPTQIKKWIGERLGREVKSLTKTSIPGLIEEAKDLNKSEVIKMLEL-RQLMAKTS 297 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 I K +T+ A DGR+RG LQFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 298 IKKYDTMQNARCKDGRVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLDNARNFVREG 357 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + E + S +R+ I G + +V+D + IEARV+AW AGE W++ F+ Sbjct: 358 KFEEVEFLFDSVPDTLSQLIRTAFIPREGNRFIVSDFSAIEARVIAWFAGEQWRLDVFST 417 Query: 405 GEDIYVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 IY + ++ F PI+ + K E R GK+ ELALGY G +M + ++ Sbjct: 418 HGKIYEASASQMFKVPIESIKKGSELRQKGKIAELALGYGGSVGALSSMDRKKSIPEEEL 477 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 VKS W A + + K W Sbjct: 478 PGLVKS------WRNANPN------------------------ITKFW-----------W 496 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------ 576 D+ + ++E +++ + L + I LPS R+L Y K + Sbjct: 497 DVDKAAKKAIRERTTVNLQ-----YGLKFIYDPGVLFIQLPSGRKLSYIRPKIEPHETFS 551 Query: 577 ---CSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 +Y + Q R TYG KL ENIVQA SRD L E M K GYDIV+ VHDE Sbjct: 552 GDKITYEGMEQTSKQWKRIDTYGPKLVENIVQATSRDCLREAMFRVNKEGYDIVMHVHDE 611 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V + P +V + LM + WA GLPLKA+GYE Y K Sbjct: 612 VVLDIPKDRA-TVKEINELMGQPIKWAPGLPLKADGYECNYYMK 654 >gi|319757792|gb|ADV69734.1| phage polymerase [Streptococcus suis JS14] Length = 651 Score = 674 bits (1740), Expect = 0.0, Method: Composition-based stats. Identities = 202/706 (28%), Positives = 311/706 (44%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE I L A + ++ PV ++D ++ +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFEILLFAVSVNNGPVTVYDLSK-EKLPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FER+ L + W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERVCLSNWLKKYHPDLLLDRFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L + KM EG LI FC K + + +H W F +Y +R Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCVPCKPTKINGGRTRNLPHHAPDQWATFIDYNRR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +RL P+ D D +L DQ INDRG ID+D V ++ + + ++ E+ Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYLQDQIINDRGIGIDVDFVKAAIKIDTESKAQIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + + +L G+ + + +K +L + ++ R Sbjct: 240 LKALT--SLENPNSVLQMIGWLRE-HGVTTDSLDKKAVKELLK--TVDDKTSKVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLEEARK 354 Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E + D S +R+ + S GKK +V D + IEARVL+ +AGE W+ K Sbjct: 355 LFKTGDLEATELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGEKWRSK 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + R GK+ ELA GY G K M Sbjct: 415 VFELGKDIYCMSASQMFGVPVEKHGQNSKLRQKGKIAELACGYGGSVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------ALDMGLSEEELQPLVNSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576 LW D+ V+E S + + I LPS R+L Y + Sbjct: 495 LLWWDVDNAVKTAVKEQIPTSTHGIQ------FEVRSGILFITLPSGRKLAYIKPRIGEN 548 Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y T T++ R +YG K ENIVQAISRDIL +K + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAYSLKQL--KEFKIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECPMEQK--IDKIASLMGIAPDWMSDINLRADGYECLFYQK 650 >gi|253581725|ref|ZP_04858949.1| DNA polymerase [Fusobacterium varium ATCC 27725] gi|251836074|gb|EES64611.1| DNA polymerase [Fusobacterium varium ATCC 27725] Length = 657 Score = 673 bits (1736), Expect = 0.0, Method: Composition-based stats. Identities = 204/702 (29%), Positives = 315/702 (44%), Gaps = 73/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G++ YA + I L AY+ D VK+ D + +P ++ Sbjct: 1 MKHLSIDIETYSSVDIKKAGMYKYALSDDFQILLFAYSIDFGEVKIIDLAKGEILPEVII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D+ ++ A+N+ FE + G ++W T G + L A+ Sbjct: 61 EALNDKNIIKHAYNAPFEWWCLNQA-GYKTSIEQWRDTMFHGLYCGYTAGLGATGAAIGL 119 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K GKALI FC K + + +H + W+LF YC +DV E++ Sbjct: 120 PQDKKKDTTGKALIKLFCVPCKPTKKNGGRLRNLPHHEPEKWELFKNYCIQDVVTETEIY 179 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL P+ E++LW+LDQ IN G +ID +LV + +L E+ +++T + Sbjct: 180 KRLSNFPVPQEEQELWVLDQKINAYGVKIDTELVKGALSINDIVTAELTEEAIQVTG--L 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L TG D+ ++ +GT+ ++ + + ++ R + ++I K Sbjct: 238 DNPNSAAQLGKWLKEKTGQDIENLQKGTVSELIGSLEDKEAVR-VLEIRQELAKTSIKKY 296 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + EA+ DGR+RG LQFYGA+RTGRW+G + Q QNLPR + I + Sbjct: 297 VAMEEAICPDGRIRGLLQFYGANRTGRWAGRLVQVQNLPRNYLETLDYAREIVKSQDADF 356 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + G S +R+ + S G K VVAD + IEARV+AW+AGE W+ + FA I Sbjct: 357 LKLVYGNVSDTLSQLIRTAFVPSEGHKFVVADFSAIEARVIAWLAGEQWRQEVFATHGKI 416 Query: 409 YVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y + ++ F PI+ + K R GKV ELALGY G + M Sbjct: 417 YEASASQMFGVPIELIKKGNPEYALRQKGKVAELALGYGGSSGALIAMG----------- 465 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ L V + WR ++ + LW Sbjct: 466 -----------------------------ALDMGLEEKELPDVVRRWRNANKRITDLWYG 496 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL--- 580 + +++ G + + + + + + + I LPS R+L Y + Sbjct: 497 IENAVIKLMETGETQGLKGIIFSREIDLIYDQDFLTIKLPSGRKLYYPKPHLKENRFGSN 556 Query: 581 -------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 N T + + TYGGKL ENIVQAISRD L +K G V+ +HDE V Sbjct: 557 ALHYFGVNQTTKKWEVQETYGGKLVENIVQAISRDCLAVTLKRLETEGLQTVMHIHDEAV 616 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P + +C LM + WA GL LKA G+E+ Y K Sbjct: 617 IDA--DPNVDLNKVCELMGQPIEWAPGLLLKAAGFESGYYMK 656 >gi|304389855|ref|ZP_07371814.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327031|gb|EFL94270.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 655 Score = 670 bits (1729), Expect = 0.0, Method: Composition-based stats. Identities = 218/707 (30%), Positives = 320/707 (45%), Gaps = 85/707 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIE+ SP L K GV+ YAE + L Y+ D PVK+ D +MP ++L Sbjct: 1 MRTLFCDIESFSPAQLAKTGVYLYAEHPDFDLLLFGYSIDGGPVKVVDLAGGQSMPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 L D +V+ AHN+ FER+ L + ++W CT + + GLP SL Sbjct: 61 AALVDSSVVKWAHNAAFERVCLSAWLRAHHSELLGEGFLDPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKR 165 L + K GK LI +FC + S R N A W F +Y +R Sbjct: 121 DAVAAVLKL--DVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 179 DVEVELAIHDRLAFFPMPEAEWDTYALDQCINDAGILLDHTLVDNAVAVDEHHRNASLAR 238 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 KLT + + L+ +L G +L +++ + + L T + K+++ R Sbjct: 239 AQKLTG--LDNLNSPIQLKQWLVTR-GCELESLAKAEVDAALD--TATGVVKEVLELRGD 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + S++ K + +DGR RG +QFYGA RTGR++G + Q QNLPR + ++ Sbjct: 294 LAKSSVKKYQAMHNVAGADGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQARS 353 Query: 344 IQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + + + S +R+ I S G + +VAD + IEARV+AW+AGE + Sbjct: 354 LVQTGNLDALELLYESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTL 413 Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 AF G+D+Y T ++ F+ P++K ++ E R GK+ LA GY G K M Sbjct: 414 AAFREGKDLYCETASRMFDVPVEKHGINGELRQKGKIAVLACGYGGSVGALKAMG----- 468 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A L + + AWR + + Sbjct: 469 -----------------------------------AFTMGLAEHELKPIVDAWRQANPHI 493 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 +QLW D+ + + S+R+ + L + I LPS RRL Y + Sbjct: 494 VQLWADVEQAAIAAI------SSRQPIRLRNLRFSVESGILFIELPSGRRLAYVQPRLGE 547 Query: 578 SYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + + + + TYGGKL ENIVQAI+RD+L GM K G+ IV+ V Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLVENIVQAIARDLLVVGMHAVAKAGHRIVMHV 607 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDEIV + P F+V C LM+ P+WA+GLPL A+GYE YRK Sbjct: 608 HDEIVIDEPTNLDFAVADACKLMSTLPAWAEGLPLDADGYECNYYRK 654 >gi|260161774|emb|CAZ39318.1| phage polymerase [Streptococcus suis] gi|313575356|emb|CBR26885.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 651 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 201/706 (28%), Positives = 313/706 (44%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE + L A + D+ PV ++D + +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLFAVSVDNGPVTVYDF-NKEKLPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 + L D+ V+ A N+ FERI L + W C+ + + GLP SL Sbjct: 62 EALVDDRVIKWAFNASFERICLSNWLKKHHPELLLDGFLSPNSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L + KM EG LI FC K + + +H W F +Y +R Sbjct: 122 EGVGTVLKLKD--KKMREGADLIRYFCVPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +RL P+ D D + DQ INDRG ID+D V ++ ++ + K+ E+ Sbjct: 180 DVEVELAIKERLKNFPVPDFVWDEYHQDQIINDRGIGIDIDFVKAAIKIDSESKAKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + + +L G+ + + +K +L ++ + ++ R Sbjct: 240 LKALT--RLENPNSVLQMIGWLRE-HGVTTDSLDKKVVKELLKTAD--ETTAQVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QF+GA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLEEARE 354 Query: 344 IQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E + D S +R+ + S GKK +V D + IEARVL+ +AGE W+ K Sbjct: 355 LFGTGDLEATEFLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + E R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCISASQMFGVPVEKYGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + +WR + ++ Sbjct: 469 ----------------------------------ALDMGLKDKELRPLVDSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576 W D+ +++ + +K + I LPS R+L Y K Sbjct: 495 LFWWDVDRAVKTAIKQHIQTETHGIQ------FEVNKGMLSITLPSGRKLAYVKPKIGEN 548 Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y T T++ R +YG K ENIVQAISRDIL MK + ++IV VH Sbjct: 549 QFGGESITYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFAMKQLQE--FNIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E S+ + LM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECGIDQ--SLDEIAYLMGIAPEWMTDIKLRADGYECSFYQK 650 >gi|297583086|ref|YP_003698866.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297141543|gb|ADH98300.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 644 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 200/698 (28%), Positives = 315/698 (45%), Gaps = 78/698 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIE+ S L K GV+ YAE I L AY+ D PV + D + +P + Sbjct: 1 MKTLNIDIESYSRTDLAKSGVYRYAEAPDFDILLFAYSVDAGPVHVVDLAQGETIPDVVR 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D+ V+ A N+ FER + L I W C+ V + GLP SL+ A + Sbjct: 61 QALTDDGVIKWAFNAQFERTCLSRYLNTPIHPTSWRCSMVWSAYLGLPLSLEGAAIVTG- 119 Query: 119 SEHLTKMEEGKALIARFCKGSID---SPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 K++EGK LI FCK + + +H + W F Y +RDVE + + Sbjct: 120 -ADKKKLQEGKDLIRYFCKPCKPTQVNGGRERNFPHHDPEKWVAFKRYNQRDVETEQAIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P+ + E ++LDQ INDRG +D V R+ L + LT + Sbjct: 179 DKISRYPVPEQEWGHYVLDQIINDRGILLDPVFVEAAIACDTATREALMNRLRTLTK--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + ++ +L G++ + + + +L + +++ R + S++ K Sbjct: 237 ENPNSVMQMKDWLAE-QGVETGALDKAAVHELLKSA--QGDVAEVLTIRQKLAKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + + D R RG +QFYGA+R+GR++G + Q QNLP+ + + + + E Sbjct: 294 TAMKQVAGKDDRARGLIQFYGANRSGRYAGRLIQVQNLPQNHVPDLKEARDLVRASNLEA 353 Query: 353 I----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + L S+ +R+ I + +VAD + IEARV+AW+AGE W+ + FA I Sbjct: 354 LDMLYPSVPDLLSELIRTAFIPKEHHQFIVADFSAIEARVIAWLAGEAWRNEVFATHGKI 413 Query: 409 YVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ FN P++++ K R GK+ ELALGY G + M Sbjct: 414 YEASASQMFNVPLEEIDKGSPLRQKGKISELALGYGGSVGALRAMG-------------- 459 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + +AWR + ++Q W + + Sbjct: 460 --------------------------ALDMGVEEEELKPLVQAWRQANPKIVQFWWAVDQ 493 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---------KGDC 577 V++ + S ++ + + LPS R L Y +G C Sbjct: 494 AAQKAVKQRTTTSTHGIS------FTYQSGLLLVGLPSGRHLSYVKPTIVLNDFGREGLC 547 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 AT + R TYG KL ENIVQA+SRD+L M+ + GY IV+ VHDE+V E Sbjct: 548 FEGIGATKKWERIDTYGPKLVENIVQAVSRDLLAHAMQRIEQEGYAIVMHVHDEVVVEA- 606 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + +V +C+LMT P W+ GL LKAEGY Y+K Sbjct: 607 -KQHVTVSDICALMTDQPDWSSGLNLKAEGYACMFYQK 643 >gi|76786923|ref|YP_329353.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] gi|76561980|gb|ABA44564.1| prophage LambdaSa04, DNA polymerase [Streptococcus agalactiae A909] Length = 651 Score = 667 bits (1721), Expect = 0.0, Method: Composition-based stats. Identities = 198/706 (28%), Positives = 312/706 (44%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L ID+ET L K GV++YAE I L A + D+ PV ++D T+ +P +L Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLPDQIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 Q L +++++ A N+ FERI L + W C+ V + GLP SL Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSMVWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L E K++EG +I FC K + + +H W F Y KR Sbjct: 122 EGVGTVLKLKEQ--KLKEGGDVIRYFCLPCKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179 Query: 166 DVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +L P+ D + + DQ INDRG ID+D V + + + K+ E+ Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDRGIGIDVDFVKAAITIDEESKSKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + +LT + + + +L G+ + + +K +L + ++ R Sbjct: 240 LKELTG--LENPNSVLQMIGWLRE-HGVTTNSLDKKAVKELLK--VVDAKTTKVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 354 Query: 344 IQALNRGETIADPLGL---ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E G S +R+ + S+GKK +V D + IEARVL+ +AGE W+ Sbjct: 355 LFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSM 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + + R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------AIDMGLDEQELQPLVDSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576 W D+ + ++ + + K + I LPS R+L Y K Sbjct: 495 LFWWDVDKAVKTAIKYQKQTETHGIQ------FKVRKGMLFITLPSGRKLAYVKPKMGEN 548 Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y T T++ R +YG K ENI+QAISRDIL MK + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DEI+ E + ++ + +LM K P W + L+A+GYE Y+K Sbjct: 607 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|304406771|ref|ZP_07388426.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] gi|304344304|gb|EFM10143.1| DNA-directed DNA polymerase [Paenibacillus curdlanolyticus YK9] Length = 653 Score = 667 bits (1720), Expect = 0.0, Method: Composition-based stats. Identities = 209/699 (29%), Positives = 317/699 (45%), Gaps = 71/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA+ I + AY+WD PV++ D + +P +++ Sbjct: 1 MRTLNIDIETYSSIDIKKAGAYKYAQSPDFQILMFAYSWDGGPVQIVDLAQGEYLPQEIV 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L D V+ A+N+ FE + I ++W CT V G + L AL Sbjct: 61 EALADPAVVKHAYNAAFEWYCLNRFFYSPI--EQWRCTQVHGLYCGYTAGLGAVGEALGI 118 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K+ G +LI F CK + + T +H + W+LF EYC DV A E+ Sbjct: 119 PQDKRKLGTGGSLIRTFCIPCKPTRTNGMRTRTLPHHEPEKWKLFKEYCVGDVVAEMEIQ 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ D E LW LDQ IN RG DL +V + Q +L + + LT + Sbjct: 179 RRLSAFPVPDQEWQLWHLDQRINARGLFCDLQMVEGALAVDEQVTSELRAEAISLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + L +L TG ++ ++ +GT+ ++ + A+ ++ R S ++ K Sbjct: 237 DNPKSVQQLSKWLAEETGEEVENLQKGTVSKLIDKLD-EGKARRVLEIRQELSKTSTKKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A SD R+RG LQFYGA+RTGRW+G + Q QNLPR S + + + E Sbjct: 296 AAMQTAAGSDQRVRGLLQFYGANRTGRWAGRLVQIQNLPRNYLSTLEYARQLVVERKVEM 355 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + G S +R+ + GK+L VAD + IEARV+AW+AGE W++ FA I Sbjct: 356 LKFVYGNVPDTLSQLIRTAFVVPAGKQLGVADFSAIEARVIAWLAGEQWRLDVFATHGKI 415 Query: 409 YVTTYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + ++ F PI+++ K + R GKV ELALGYQGG M Sbjct: 416 YEASASQMFGVPIEQIGKGSDLRQKGKVAELALGYQGGKGALIAMG-------------- 461 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + WR ++ ++ LW + Sbjct: 462 --------------------------ALDQGLTEAELPEIVTRWRNANRRIVDLWYSMEA 495 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KGDCS 578 V++ G + R + + I LPS R+L Y+ K Sbjct: 496 AAIEVMETGQPVGVRGLIFARESHHATKQDFFTITLPSGRKLFYAKPFLRENDFGKPALH 555 Query: 579 Y--LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 Y ++ + + TYGGKL EN VQAI+RD L + GY IVL VHDE+ +E Sbjct: 556 YWGMDQTSKKWTVLNTYGGKLVENCVQAIARDCLAVTLMRLDHVGYPIVLHVHDEVGAEL 615 Query: 637 PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + + +M + WA GLPLK +G+ Y K Sbjct: 616 --SSADELDRMLEIMAQPIQWAPGLPLKGDGFVTNFYMK 652 >gi|170023450|ref|YP_001719955.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] gi|169749984|gb|ACA67502.1| DNA-directed DNA polymerase [Yersinia pseudotuberculosis YPIII] Length = 693 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 258/695 (37%), Positives = 371/695 (53%), Gaps = 30/695 (4%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L++D+ET S P+ G AYA A I L A+A DD PV + + TE +P L LRD Sbjct: 5 LWLDLETYSETPIRN-GTHAYAANAEIMLIAWAIDDGPVSVHEFTEPKNLPVPLCTALRD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSK-------RWICTSVLARTNGLPSSLKNACLAL 116 + AHNS F+R + + L RW T V A +GLP SL + C L Sbjct: 64 GETLVYAHNSQFDRTVLRTHLKSYKWPNVAARDVTRWRDTMVKALAHGLPGSLSDLCDIL 123 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ K + GKALI FCK + T+ H + W+ F +Y D+EA RE+ K Sbjct: 124 GVAQDKAKDKAGKALIQLFCKPRAKNSAIRRATKQTHPEEWKRFIDYAGLDIEAMREIDK 183 Query: 176 RLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L + E LW DQ INDRG ++D L + E+K+L LTD ++ Sbjct: 184 KLPVWNYQSNELALWHFDQRINDRGVQMDTVLAEAAVSAVEIEQKRLAVRTQDLTDNEVQ 243 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 ++ Q L ++ G+ L DM T++ +S ++ ++L+ RL +S ++ K Sbjct: 244 AATQRDVLLKHIVEAFGVTLPDMQASTIQRRVSDPDLPIELRELLAIRLQASTTSTSKYK 303 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET- 352 TL + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + I+AL G Sbjct: 304 TLLKGVSKDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPVLGQETIDTGIEALKAGCAD 363 Query: 353 --IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----G 405 + + L S +R CI+A GKKLVV+DL+ IE R L W++GE+WK++AF + G Sbjct: 364 LLFDNVMELISSALRGCIVAPEGKKLVVSDLSNIEGRALVWLSGEEWKLQAFRDYDAGTG 423 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 D+Y+ YA+AFN D V K QR IGKVMEL LG+ GG F T A GLDL ++ Sbjct: 424 HDLYMLAYARAFNISPDNVDKIQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDGLAKA 483 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 +A+S + Q + + +++ AC+ +K+ WR H + W ++ Sbjct: 484 ALPNVPASIQREAQSWYKASVKQKRTYGLSEQVF-IACDSLKRMWRNAHPKTVSFWYEIE 542 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL-- 580 + + R+ +L +RR + I LPS R + Y ++ G SY+ Sbjct: 543 DTVRRAIAAP-----RQTFTCRKLKIRRDGSWLRIQLPSGRAVCYPGIRIDEGKISYMGI 597 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 N+ + + R +TYGGKLTEN+ QA +RD++ M +GY+I LTVHDE+++E PDT Sbjct: 598 NSYSRKWQRLKTYGGKLTENVTQAAARDVMANNMPLIETSGYEITLTVHDEVLTEAPDTE 657 Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 F+ L L+ NP WA LPL A G+EA YRK Sbjct: 658 QFTSDKLSELLATNPEWALDLPLSAGGFEAYHYRK 692 >gi|227497454|ref|ZP_03927686.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226833079|gb|EEH65462.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 649 Score = 664 bits (1713), Expect = 0.0, Method: Composition-based stats. Identities = 211/704 (29%), Positives = 314/704 (44%), Gaps = 85/704 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET SP L GV+ YAE I L Y+ D P K+ D +P +L Sbjct: 1 MRSLSLDLETFSPTNLATAGVYRYAEDEAFRILLFGYSIDGAPAKVIDLARGEPIPPGIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109 Q L D TV A N+ FER+ L P + W CT V A + GLP SL Sbjct: 61 QALTDPTVTKSAFNASFERVCMSAYLRRHHPDLLAEGFLGPRGWRCTMVWAASLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 A AL + K G+ LI RF D ++ WQ + Y +RDV+ Sbjct: 121 DGAAKALRLP--IEKDPAGQKLIRRFSIPGKDGI--RVLPSDDPVGWQQYISYNRRDVDV 176 Query: 170 TRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 +L RL P+ + E + + LDQ IND G RID L E+ ++ R +L Sbjct: 177 EVQLASRLARNPMLEAEWETYWLDQRINDTGVRIDTQLAAHAVEVDSRHRDTCLARAQQL 236 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L+ +L G +L +++ +++ L +T +++ R S S Sbjct: 237 TG--LENPNSPIQLKDWL-AAHGCELESLTKTEVEAALE--TVTGDVAEVLRLRQDLSRS 291 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K + SD R RG +Q+ GA RTGR++G + Q QNLPR + +++ Sbjct: 292 SVKKYQAMLTVAGSDDRARGLIQYMGAGRTGRFAGRLIQVQNLPRNHMPDLASARSLLNA 351 Query: 348 NRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 + + S +R+ I S + +VAD + IEARVLAW+AGE+ ++AF Sbjct: 352 GNSDALELLYSPLPDTLSQLIRTAFIPSKDHRFIVADFSAIEARVLAWLAGEEGTLQAFR 411 Query: 404 NGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 G+D+Y T ++ F P++K + E R GK+ LA GY G K M Sbjct: 412 EGKDLYCQTASRMFGVPVEKHGANSELRQKGKIAVLACGYGGSVGALKAMG--------- 462 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ L + + + AWR + V+Q W Sbjct: 463 -------------------------------ALRMGLDESELKPLVDAWRDANPMVVQFW 491 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 D+ + ++ R V R+ + + I LPS R L Y + + Sbjct: 492 HDIEQAAIT------TVETRTPTQVGRIHLSYRSGCLFIALPSRRELCYPRPRLGENRFG 545 Query: 582 ----------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 T + TYGGKLTEN+VQA +RD+L M + G+ IV+ +HDE Sbjct: 546 MTSILFDGVDGTTRKWGPIETYGGKLTENLVQATARDLLTHAMHHVDAAGHRIVMHIHDE 605 Query: 632 IVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV + P T SV + +LMT+ P+WA GLPL A+GYE Y K Sbjct: 606 IVVDEP-TDGASVEDIVTLMTRLPTWADGLPLDADGYECGFYMK 648 >gi|227496457|ref|ZP_03926741.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] gi|226834039|gb|EEH66422.1| DNA-directed DNA polymerase [Actinomyces urogenitalis DSM 15434] Length = 651 Score = 663 bits (1711), Expect = 0.0, Method: Composition-based stats. Identities = 228/697 (32%), Positives = 324/697 (46%), Gaps = 77/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S LP VGV+ YA E I L AYA D V++ D +P D+L Sbjct: 9 MRTLSIDIETFSKASLPSVGVYRYAADESFEILLFAYAVDGGEVQIVDLARGEQIPGDVL 68 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V+ A N+ FER+ LG + + W C+ V A G+P L AL+ Sbjct: 69 DALEDPGVVKSAFNAAFERVCLSAHLGHRLDPEGWRCSMVWASFAGVPLDLAGVAKALHL 128 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 KM EGK LI F K + + + H W+ F YCKRDVE + Sbjct: 129 ETE--KMGEGKNLIRYFSLPAKPTKANGGRERNLPEHAPDDWETFKAYCKRDVEVELAIT 186 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL +P+ E D + DQ INDRG RID DL + R E + +LT + Sbjct: 187 KRLHAMPMPAREWDNYWDDQRINDRGVRIDADLATAAVDADNTGRASALERMRELT--RV 244 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L G+ + +++ + + L + + +++ R + S++ K Sbjct: 245 DNPASVTQLLAWL-RSQGLQIDSLAKADVAAALEGA-LEGDVAEVLALRQEMAKSSVKKY 302 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + DGR G LQF GA RTGRW+G + Q QNLPRQ S+ + + Sbjct: 303 ERMLACRCPDGRAHGLLQFMGAGRTGRWAGRLVQVQNLPRQSISDLEAAADLVRTGHADM 362 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + G + S+ +R+ +A G + +VAD + IEAR +AW+AGE W + F G DI Sbjct: 363 LETLWGSAPQVLSELIRAAFVAEPGSRFLVADYSAIEARTIAWLAGEQWVLDLFEAGGDI 422 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQFSQNVK 467 Y T + F ++K S R KV LA GYQGG KTM GL + + Sbjct: 423 YCETGTRMFRQVVEKHSP-LRQRAKVAVLACGYQGGVGALKTMGGEKLGLSEDEMAD--- 478 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + AWRA + + QLW D+ Sbjct: 479 --------------------------------------IVAAWRAANPKIAQLWWDINAA 500 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT--- 584 V+++GG+ + V R+ + K + I LPS R LVY + + + Sbjct: 501 AIAVIKDGGARA------VGRIRLAHDKGALIITLPSGRPLVYPSPRIGENRFGGESITH 554 Query: 585 ------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + R TYGGKLTENIVQA +RDIL + ++GY +V+ +HDE+V+E P+ Sbjct: 555 MGVGVNRKWGRIETYGGKLTENIVQATARDILAHAIARLERSGYPVVMHIHDEVVTEVPE 614 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV LC+LM++ P WA GLPL AEG+E+ YRK Sbjct: 615 G-RGSVEELCALMSQAPPWADGLPLAAEGFESTYYRK 650 >gi|298346386|ref|YP_003719073.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] gi|298236447|gb|ADI67579.1| DNA-directed DNA polymerase [Mobiluncus curtisii ATCC 43063] Length = 658 Score = 663 bits (1710), Expect = 0.0, Method: Composition-based stats. Identities = 205/693 (29%), Positives = 314/693 (45%), Gaps = 74/693 (10%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L +D+ET S L + GV+ Y + I LC+Y+ DD V D +P +++ Sbjct: 20 KSLALDLETFSAVNLSQCGVYRYCDDPSFRILLCSYSVDDSDVVTVDLASGEQLPPEVVA 79 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D +V+ A+N+ FER LG + W CT V A T GLP SLK+ L + Sbjct: 80 ALDDPSVIKWAYNAAFERTCLSAHLGHRLDPTGWRCTMVWAATLGLPLSLKDVGTVLGLA 139 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI- 178 K+ EGK LI F + + ++ AW LF +Y RDVE + ++L Sbjct: 140 HQ--KLAEGKDLIKYFSLPTKTGIRHQP--SDDSAAWALFKQYNARDVEVETTIRRKLSH 195 Query: 179 -PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 P+ D + +DQ INDRG ID L + RK+ +LT + + Sbjct: 196 HPVPDEVWGQYEVDQRINDRGIHIDTRLATNAMACDKKYRKRTLARAQELTG--LDNPAS 253 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L+ +L G + M++ + S L + + ++ + R S S++ K +++ Sbjct: 254 PLQLQSWLAE-QGCKISSMAKEDVDSALDTATGS--VREALELRQDLSKSSVAKYRKMAD 310 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---- 353 A +DGR G LQFYGASRTGRW+G + Q QNLPR + +++ + + Sbjct: 311 ATCADGRAHGLLQFYGASRTGRWAGRLVQVQNLPRNYLPDLAQARSLVHYGDFDVLEMLY 370 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R+ I S + +VAD + IEARVLAW+AGE+ + AF NGED+Y T Sbjct: 371 PSVPDTLSQLIRTAFIPSENHRFIVADYSAIEARVLAWLAGEETTLAAFTNGEDLYCATA 430 Query: 414 AKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 + F P++K + E R GK+ LA GY G K M Sbjct: 431 SAMFGVPVEKHGANAELRQKGKIAVLACGYNGSVGALKAMG------------------- 471 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 A+K L + + + AWRA + ++ +W D+ + Sbjct: 472 ---------------------ALKMGLTASELQPIVDAWRAANPNIVAMWHDVDQTAIQA 510 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT------- 584 + + R + L K + I LPS RRL Y + + Sbjct: 511 I------TTRSTVTLGNLSFTGTKGMLFITLPSGRRLAYVKPGLGVNRFGGTSITYWGQG 564 Query: 585 --SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 + + TYGGKL ENIVQA +RD+L E + G+++V+ +HDE+V + Sbjct: 565 INRKWQQLETYGGKLVENIVQATARDLLAEAITRIENAGHEVVMHIHDEVVVDESKDSGT 624 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V +C+LM + P+WA GLP+ A GY+ Y K Sbjct: 625 TVADICTLMNQLPTWALGLPIDAAGYKCDFYMK 657 >gi|322382461|ref|ZP_08056356.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] gi|321153574|gb|EFX45963.1| hypothetical protein PL1_2400 [Paenibacillus larvae subsp. larvae B-3650] Length = 662 Score = 662 bits (1709), Expect = 0.0, Method: Composition-based stats. Identities = 200/705 (28%), Positives = 317/705 (44%), Gaps = 82/705 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L ID+ET S L GV+ Y E + L AYA+DD+PV++ D T +P ++ Sbjct: 9 MKILQIDLETYSSVDLKDCGVYRYVESPDFEVLLFAYAYDDDPVQVIDLTAFEDLPDQVV 68 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D V+ A N+ FER KK GI +W CT+V A GLP L+ L Sbjct: 69 HDLTDPNVLKTAFNAAFERTCIKKHFGIKCNPSQWRCTAVWALALGLPGYLEGVAEVLKL 128 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRA--NHVQAWQLFGEYCKRDVEATREL 173 K GK LI F CK + + + ++ W+ + Y +DV RE+ Sbjct: 129 EAQ--KDTRGKNLIKYFSVPCKPTKANGGRTRNHPPHHDMEKWEQYKAYNIQDVVVEREV 186 Query: 174 FKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++L P+ E DLW LDQ INDRG ++D L + + Q + L ++ +T Sbjct: 187 RRKLERFPVPQHEWDLWALDQRINDRGIQLDPTLFNQAIDCADQYKTGLLQEAKDITQ-- 244 Query: 232 IRSSRQTYALRMYLFLITGIDLVD-MSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L+ +L G++ D + + + ++L + + ++ R +++ Sbjct: 245 LENPNSLTKLKEWLAE-QGLETPDGLGKEHMPTLLVQAPDEDT-RRVLQIRQELGKTSVD 302 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N ++ ++ +DGR RG LQF GA+RTGRW+G + Q QNLP+ + + + + + Sbjct: 303 KYNAMARSICADGRARGILQFCGANRTGRWAGRIIQVQNLPQNKLNALWMAREVLKSGDF 362 Query: 351 ETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + G + S +R+ I S G + +V+D + IEAR++AW+A E W + F + Sbjct: 363 DLLEMLYGALPSVLSQLIRTVFIPSPGCRFIVSDFSAIEARIIAWLADEHWVLNVFQDHG 422 Query: 407 DIYVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY ++ F P++ + K E RA GKV LA GYQGG M Sbjct: 423 KIYEAAASQMFKVPMETIVKGHPNYELRAKGKVATLACGYQGGPPALIKMG--------- 473 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A+K + + K WR + +++LW Sbjct: 474 -------------------------------ALKSGIPEEELPGIVKRWRKANPRIVKLW 502 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY-- 579 E V+E ++ + R + LPS R L Y + + Sbjct: 503 YAAEEAALTAVREKRTVPL-----AHGVKYRYKSGTLFADLPSGRSLAYVNPRIKPDPNF 557 Query: 580 ---------LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 ++ + M RTYGG+L EN+VQAI+RD L E + Y V+ VHD Sbjct: 558 GKDGLVFDGMDQIKKKWMSHRTYGGRLVENLVQAIARDCLAESLMRLDAAEYRTVMHVHD 617 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V + P SV + +M++ WA GLPL A G+E + Y+K Sbjct: 618 EVVLDVPIGT-GSVDHVTGIMSQPIDWAPGLPLSAAGFECEFYQK 661 >gi|307569599|emb|CAR82778.1| phage-related DNA polymerase family protein [Listeria monocytogenes L99] Length = 644 Score = 662 bits (1707), Expect = 0.0, Method: Composition-based stats. Identities = 212/695 (30%), Positives = 324/695 (46%), Gaps = 76/695 (10%) Query: 2 SKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIET S + + G +AY +E I L AYA+DDEPVK+ D T +P +L+ Sbjct: 4 KVLRIDIETYSGRDIKNCGAYAYTESEDFEILLFAYAYDDEPVKVIDLTIDE-IPDTVLE 62 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L + V+ AHN+ FER K +P ++W CT V GLP+SL AL + Sbjct: 63 DLNNRRVLKTAHNANFERTCLAKYYNRKMPPEQWQCTMVHGTLLGLPASLDMMSKALRLA 122 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ----AWQLFGEYCKRDVEATRELFK 175 + K EGKALI FC + N+ + W F EYC++DV R + K Sbjct: 123 QE--KDNEGKALIRYFCMPCKPTKANGGRTRNYPEHASEKWAKFIEYCRQDVVVERSIAK 180 Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ P + E+ W LDQ I D+G RID+DLV + + L + LT + Sbjct: 181 KIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAIACQERYQASLSKKAKGLTG--LE 238 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L+ +L G + +++ ++ +L+ ++ + ++++L R S ++I K Sbjct: 239 NPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLADEDLDEDVREMLLLRQEMSKTSIKKYE 297 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-- 351 + A DGR+RG LQF GA+RTGRW+G + Q QNLPR + + + + L G+ Sbjct: 298 KMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNLPRNYIKD--IAEVRKDLKAGDYE 355 Query: 352 ----TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 ++ + S +R+ IA +G + D + IEARV+AW+AGE W++ F + Sbjct: 356 AFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAIEARVIAWLAGEQWRLDVFNSHGK 415 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 IY + ++ F+ PI++V K R GKV ELALGY GG M Sbjct: 416 IYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGGVNALIAMG--------------- 460 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 A++ L + + AWR + LW+ + + Sbjct: 461 -------------------------ALEMGLKENELQGIVDAWRKASPAITSLWRGVEKH 495 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-------GDCSYL 580 + S R+ L + I LPS R L Y K Y Sbjct: 496 AKLAI------STRKSQKYKGLTFYYEAGILFIKLPSGRNLAYFRAKLVPGKYGPQICYE 549 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 ++ TYGGKL ENIVQAI+RD L ++ G D V+ VHDE ++E ++ Sbjct: 550 GVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRIEDTGIDTVMHVHDEAITEVQESE 609 Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV L +++ + SWA GLPL+ +G+ + Y K Sbjct: 610 S-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 643 >gi|227875067|ref|ZP_03993212.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304390310|ref|ZP_07372263.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817354|ref|ZP_07451099.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] gi|227844345|gb|EEJ54509.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|304326066|gb|EFL93311.1| DNA-directed DNA polymerase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649795|gb|EFM47075.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35239] Length = 655 Score = 661 bits (1706), Expect = 0.0, Method: Composition-based stats. Identities = 215/707 (30%), Positives = 317/707 (44%), Gaps = 85/707 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M LF DIE+ S L K GV+ YAE + L Y+ D P+++ D ++P ++L Sbjct: 1 MRTLFCDIESFSLAQLAKTGVYPYAEHPDFELLLFGYSIDGGPIEVVDLANGQSIPDEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIP---------SKRWICTSVLARTNGLPSSL 109 L D +V+ AHN+ FER+ L P ++W CT + + GLP SL Sbjct: 61 AALVDPSVVKWAHNAAFERVCLSAWLRTHHPELLADGFLGPRQWRCTMIWSAYLGLPMSL 120 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKR 165 L + K GK LI +FC + S R N A W F +Y +R Sbjct: 121 DAVATVLKL--DVQKDTVGKKLIKQFCTPATPSVLNGGKRRNPPSADPTGWARFIDYNRR 178 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + RL P+ + E D + LDQ IND G +D LV + R Sbjct: 179 DVEVELAIHDRLACFPMPESEWDTYTLDQRINDAGILLDHTLVDNAVGVDEHHRNATLAR 238 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 LT + + L+ +L G L +++ + + L + T K+++ R Sbjct: 239 AQTLTG--LENPNSPIQLKQWLASR-GCVLDSLAKAEVDAALDTATGT--VKEVLGLRGD 293 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + S++ K + SDGR RG +QFYGA RTGR++G + Q QNLPR + +T Sbjct: 294 LAKSSVKKYQAMQNVAGSDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQART 353 Query: 344 IQALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 + E + S +R+ I S G + +VAD + IEARV+AW+AGE + Sbjct: 354 LVRTGNLEALELLHESVPDTLSQLIRTAFIPSPGHRFIVADFSAIEARVIAWLAGETTTL 413 Query: 400 KAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 +AF G+D+Y T ++ F P++K V+ E R GK+ LA G+ G + M Sbjct: 414 QAFREGKDLYCETASRMFGVPVEKHGVNGELRQKGKLAVLACGFGGSTGALERMG----- 468 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+ L + + AWRA + + Sbjct: 469 -----------------------------------ALTMGLAEHELKPIVDAWRAANPHI 493 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + LW +I++R+ + L + I LPS RRL Y + Sbjct: 494 VALW------AGVEEAAIAAIASRQSIRLRNLRFSVEAGILFIELPSGRRLAYVKPRLGE 547 Query: 578 SYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 + + + + TYGGKLTENIVQAI+RD+L GM K G+ IV+ V Sbjct: 548 NRWGGTSITYTGTTTARRWGQLETYGGKLTENIVQAIARDLLVTGMHAVAKAGHQIVMHV 607 Query: 629 HDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDEIV + P+ F+ C LM+ P+WA+GLPL A+GYE YRK Sbjct: 608 HDEIVIDEPENSGFTATGACELMSTLPAWAEGLPLDADGYECAYYRK 654 >gi|50914501|ref|YP_060473.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|40218547|gb|AAR83201.1| phage polymerase [Streptococcus pyogenes] gi|50261592|gb|AAT72360.1| DNA polymerase [Streptococcus pyogenes] gi|50903575|gb|AAT87290.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 651 Score = 661 bits (1705), Expect = 0.0, Method: Composition-based stats. Identities = 199/706 (28%), Positives = 310/706 (43%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L IDIET L K GV+ YAE + L A + D+ PV ++D + +P D+L Sbjct: 3 IKELSIDIETYCEIDLRKSGVYRYAEDDSFELLLIAVSVDNGPVTVYDF-NKEKLPQDIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 + L ++ V+ A N+ FERI L + W C+ + + GLP SL Sbjct: 62 EALVEDRVIKWAFNASFERICLSNWLKKHHPEFLSDGFLSPVSWRCSMIWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L + KM EG LI FC K + + +H W F +Y +R Sbjct: 122 EGVGTVLKLKDQ--KMREGADLIRYFCLPCKPTKVNGGRIRNFPHHAPNKWSTFIDYNRR 179 Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +R+ P+ + + DQ INDRG ID+D V ++ + + K+ + Sbjct: 180 DVEVELAIKERVKNFPVPSFVWNEYHQDQIINDRGIGIDVDFVKAALKIDGESKAKIQAE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + LT + + +L G+ + + +K +L + + ++ R Sbjct: 240 LKTLTG--LEKPNSVLQMISWLRE-HGVATDSLDKKAVKELLK--TVDETTAQVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QF+GA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMMNCVCKDGRARGMFQFFGANRTGRWAGRLVQLQNLPQNHLPDLKEARE 354 Query: 344 IQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E+ + D S +R+ + S GKK +V D + IEARVL+ +AGE W+ K Sbjct: 355 LFRTGDLESTELLYDTQDTLSQLIRTAFVPSKGKKFIVCDFSAIEARVLSHLAGERWRSK 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + E R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGQNSELRQKGKIAELACGYGGSVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------ALDMGLSEEELQPLVNSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576 W D+ V+E S + + + I LPS R+L Y + Sbjct: 495 LYWWDVDNAVKTAVKELLPTSTQNIQ------FEVKSGILFITLPSGRKLAYIKPRIGEN 548 Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y T T++ R +YG K ENIVQAISRDIL MK N + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIVQAISRDILAFSMKQL--NDFKIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + SLM P W + L+A+GYE Y+K Sbjct: 607 DEVIIECPIEQK--LDEVASLMGIAPYWLSDINLRADGYECFFYQK 650 >gi|297585291|ref|YP_003701071.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] gi|297143748|gb|ADI00506.1| DNA-directed DNA polymerase [Bacillus selenitireducens MLS10] Length = 655 Score = 661 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 218/697 (31%), Positives = 331/697 (47%), Gaps = 77/697 (11%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S L + GV+AYAE I L AYA+DDE V + D + +P+ +L+ L Sbjct: 10 LSIDIETFSNVDLKESGVYAYAEGEGFTILLLAYAFDDEEVIVVDLVQDEPIPTTVLKAL 69 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D ++M A+N+ FER L +P+++W C+SV A T GLP L LN + Sbjct: 70 IDPSIMKTAYNANFERTCLAAYLNQPMPTEQWHCSSVHALTLGLPGHLDGVANVLNLGDQ 129 Query: 122 LTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFKRL 177 K GKALI F CK + + H ++ W + YC++DVE R L KRL Sbjct: 130 --KDNAGKALIRYFSVPCKPTASNGHRTRNLPEHDLEKWHAYKAYCRQDVEVERALRKRL 187 Query: 178 I--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 P+ + E+ LW LDQ +ND G RID DLV + +L A+E+ L E+ ++T + + Sbjct: 188 ASNPIPEKEQRLWELDQRMNDEGVRIDTDLVRQAIQLDAKEQALLLEEAKQITG--LENP 245 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 LR +L GI+ +++ + +L +++ + +++ R S +++ K + Sbjct: 246 NSVAQLRDWLTSR-GIETSGLAKKQVSDLL-QTDLPGDVRRVLILRQMMSKTSVKKYEAM 303 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++ DG +RG LQFYGA+RTGRW+G + Q NLP+ + + + E I Sbjct: 304 DRSICKDGHIRGLLQFYGANRTGRWAGRIVQAHNLPKHRIGDLDEARQLVKTGNYELITT 363 Query: 356 PLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 G L S R+ I G + VV+D + IEARV+AW+AGE W++K F IY Sbjct: 364 LYGSLADLLSQLTRTAFIPKKGYRFVVSDFSAIEARVIAWLAGERWRMKVFEGHGKIYEA 423 Query: 412 TYAKAFNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + ++ F PI++++K R GK+ ELALGY G M Sbjct: 424 SASQMFGVPIEEITKASPLRQKGKIAELALGYGGAKGALTQMG----------------- 466 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 A++ L + KAWR + ++ LW DL + Sbjct: 467 -----------------------ALEMGLSEDELPALVKAWRKANPNIVNLWYDLEKSAF 503 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---------KGDCSYL 580 V+ ++A+ + + LPS R L Y + + +Y Sbjct: 504 EAVKWQKVVTAK-----SGIQFYGGSGLLRARLPSGRSLSYVRPQIGIDERFGREEITYE 558 Query: 581 N--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + Q R TYGGK+ EN+VQAI+RD L E M GY I VHDE+V E P+ Sbjct: 559 GVMQGSKQWGRISTYGGKIAENMVQAIARDCLAEAMLRLDAAGYQIRFHVHDEVVIEVPN 618 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + +M++ WA GLP+ A+ +E Y+K Sbjct: 619 EQDAKAD-IERIMSEPIDWAPGLPMNADSFETGYYKK 654 >gi|77412069|ref|ZP_00788395.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] gi|77161874|gb|EAO72859.1| DNA polymerase, putative [Streptococcus agalactiae CJB111] Length = 651 Score = 661 bits (1704), Expect = 0.0, Method: Composition-based stats. Identities = 197/706 (27%), Positives = 311/706 (44%), Gaps = 89/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + +L ID+ET L K GV++YAE I L A + D+ PV ++D T+ +P +L Sbjct: 3 IKELSIDLETYCEVDLRKSGVYSYAEDDSFEILLLAVSVDNGPVTVYDLTK-ENLPDQIL 61 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID---------IPSKRWICTSVLARTNGLPSSL 109 Q L +++++ A N+ FERI L + W C+ V + GLP SL Sbjct: 62 QALVNDSIIKWAFNASFERICLSNWLKKHHPKLLSEGFLSPNSWRCSIVWSAYLGLPLSL 121 Query: 110 KNACLALNFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKR 165 + L E K++EG +I FC K + + +H W F Y KR Sbjct: 122 EGVGTVLKLKEQ--KLKEGGDVIRYFCLPYKPTKINGGRKRNFPHHAPDKWAAFINYNKR 179 Query: 166 DVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 DVE + +L P+ D + + DQ IND G ID+D V + + + K+ E+ Sbjct: 180 DVEVELAIKNKLRNHPVPDFLWEEYHQDQNINDSGIGIDVDFVKAAITIDEESKSKIQEE 239 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + +LT + + + +L G+ + + +K +L + ++ R Sbjct: 240 LKELTG--LENPNSVLQMIGWLRE-HGVTTNSLDKKAVKELLK--VVDAKTTKVLKLRQQ 294 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 ++ S++ K + V DGR RG QFYGA+RTGRW+G + Q QNLP+ + + Sbjct: 295 AAKSSVSKYQAMVNCVCLDGRARGMFQFYGANRTGRWAGRLVQLQNLPQNHLPDLKEARD 354 Query: 344 IQALNRGETIADPLGL---ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + E G S +R+ + S+GKK +V D + IEARVL+ +AGE W+ Sbjct: 355 LFKTGDLEATDLLYGTQDTLSQLIRTAFVPSDGKKFIVCDFSAIEARVLSHLAGEKWRSM 414 Query: 401 AFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F G+DIY + ++ F P++K + + R GK+ ELA GY G K M Sbjct: 415 VFEQGKDIYCMSASQMFGVPVEKHGRNADLRQKGKIAELACGYGGAVGALKAMG------ 468 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ L + + +WR + ++ Sbjct: 469 ----------------------------------AIDMGLDEQELQPLVDSWRQANPNIV 494 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-- 576 W D+ + ++ + + K + I LPS R+L Y K Sbjct: 495 LFWWDVDKAVKTAIKYQKQTETHGIQ------FKVRKGMLFITLPSGRKLAYVKPKMGEN 548 Query: 577 ------CSYLNTATSQ-LMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +Y T T++ R +YG K ENI+QAISRDIL MK + IV VH Sbjct: 549 QFGGESVTYEGTGTAKRWERLESYGPKFVENIIQAISRDILAYSMKQL--KDFRIVGHVH 606 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DEI+ E + ++ + +LM K P W + L+A+GYE Y+K Sbjct: 607 DEIIIECDQSQ--NLEQIATLMGKAPYWMPDINLRADGYECLFYQK 650 >gi|255525749|ref|ZP_05392680.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296188034|ref|ZP_06856426.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|255510572|gb|EET86881.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] gi|296047160|gb|EFG86602.1| DNA-directed DNA polymerase [Clostridium carboxidivorans P7] Length = 646 Score = 659 bits (1701), Expect = 0.0, Method: Composition-based stats. Identities = 215/696 (30%), Positives = 321/696 (46%), Gaps = 76/696 (10%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L IDIET S + K GV+AY AE I L AYA++D+ + + D +P +++ L Sbjct: 2 LSIDIETYSSVDITKSGVYAYTEAEDFEILLFAYAYEDKEINIIDLAFGEKLPQGIIEDL 61 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + ++ A N+ FER K L +P ++W C++V A G SL+ A +LN Sbjct: 62 TNPKLIKTAFNANFERTCLAKYLNKPMPPEQWRCSAVHALALGFGGSLEGAAKSLNL--Q 119 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 KM+EGKALI F ++++ W++F YCK+DVE R + K+L P Sbjct: 120 QQKMKEGKALIRYFSMPCKRGERSRNLPQHNIEKWKVFKTYCKQDVEVERAVRKKLEKYP 179 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IND G +ID LV E + K E+ LT + + Sbjct: 180 VTKKEWELWALDQKINDSGVKIDKVLVHSAIECDKTCQSKKTEEAAALTG--LENPNSQV 237 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 L+ +L G+ +S+ ++ +L ++ K ++ R S +++ K + AV Sbjct: 238 QLKGWL-ETKGVKAESLSKEKVRELLKEVEDEKV-KRVLKLRQELSKTSVKKYEAIKRAV 295 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET----IAD 355 D R+RG L+FYGA+RTGRWSG + Q QNLPR + + E Sbjct: 296 CKDERVRGLLKFYGANRTGRWSGKLVQTQNLPRNTMDNLEAARMLLKSGNYEMLEVLFYS 355 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 + S +R+ I + + +V+D + IEARV+AW+AGE W I F +Y ++ Sbjct: 356 VPEVLSQLIRTAFIPAFNSRFIVSDFSAIEARVIAWLAGEKWVIDTFKGSGKVYEMAASR 415 Query: 416 AFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F PI+K+ K R GKV LA GYQG M Sbjct: 416 MFGVPIEKIVKGNMEYSLRQKGKVATLACGYQGSTGALIAMG------------------ 457 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 AVK L + AWR + +++LW+ + + Sbjct: 458 ----------------------AVKMGLKEEELSGIVAAWRKSNSNIVKLWRKIEDAAIK 495 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---------CSYLN 581 V+E + + L + + I LPS R L Y + + +Y Sbjct: 496 AVREKKVVKMQ-----YGLEFFGSEEFLFIKLPSGRSLSYVRPRIEKDFRFNKLKLTYEG 550 Query: 582 --TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 T R TYGGKLTENIVQAI+RD L M + GY IV VHDE++ + P+ Sbjct: 551 IEQGTKAWGRLNTYGGKLTENIVQAIARDCLAYAMLRLDRAGYKIVFHVHDEVILDVPNG 610 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + S+ + +M K WAKGLPLKA+G+E Y+K Sbjct: 611 -FGSLKEVNEIMGKPIEWAKGLPLKADGFETDYYKK 645 >gi|15837285|ref|NP_297973.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9105565|gb|AAF83493.1|AE003912_5 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 268/724 (37%), Positives = 363/724 (50%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAE A + L AYA + PV++WD T + +P DL L D Sbjct: 11 LWGDLETYSPVPMA-HGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG ID DLV + + ++ L + LT G ++++ Q A Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T+ + + + ++L+ R +S ++ K L S Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALLHCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E++ I A+ G D + Sbjct: 309 PDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKAGCVDLVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN------------- 404 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 369 ALTSSALRSCLIAPKNKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGTWHT 428 Query: 405 ---------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F VSKEQR IGKV EL Sbjct: 429 GAAITHGALRGAPIALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ + + + E + P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAAQ-AALPPLLLQQATELLEWTKANHRPTFDLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETAHT-----CCGITVQYRRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDEI++E D P F+ L +LM P WA+GLPL AEG++ Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDTY 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|15839115|ref|NP_299803.1| phage-related DNA polymerase [Xylella fastidiosa 9a5c] gi|9107731|gb|AAF85323.1|AE004059_13 phage-related DNA polymerase [Xylella fastidiosa 9a5c] Length = 726 Score = 657 bits (1696), Expect = 0.0, Method: Composition-based stats. Identities = 268/724 (37%), Positives = 361/724 (49%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAE A + L AYA + PV++WD T + +P DL L D Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEHAELLLFAYALGEGPVQVWDCTATATLPDDLSAALHD 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 70 PGVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEHA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 129 KDKDGKRLVALFCKPRPAHCTLRRATRDTHPTDWAQFVEYAQRDVAAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG ID DLV + + ++ L + LT G ++++ Q A Sbjct: 189 AGAELALWFLDQTINDRGVLIDTDLVQAAIRAVERAKQTLAQRTEALTGGAVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T+ + + + ++L+ R +S ++ K L S Sbjct: 249 LLQHLNTAHGVALPDMQQHTVARCVDDPALPETVRELLSIRRQASSTSTAKYQALLHCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E++ I A+ D + Sbjct: 309 PDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEVIAVGIDAMKADCVDLVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN------------- 404 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFREFDTCQGVDGCWHT 428 Query: 405 ---------------------------GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F VSKEQR IGKV EL Sbjct: 429 GAAITHGALRAAPLALQRNADHAPIRRGDDIYKRAYAHSFGIAPQAVSKEQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ + E E + P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAALYHIDLEAMAAQ-AVFPPLLLQEATELLEWTKANHRPTFDLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHT-----CCGITVQYRRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDEI++E D P F+ L +LM P WA+GLPL AEG++ Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPWAEGLPLAAEGFDTY 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|268610653|ref|ZP_06144380.1| hypothetical protein RflaF_14297 [Ruminococcus flavefaciens FD-1] Length = 658 Score = 656 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 219/714 (30%), Positives = 330/714 (46%), Gaps = 96/714 (13%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + ID+ETRS + + K GV+AYA+ ITL + + DD V+L+D +P D+L Sbjct: 1 MKTIEIDLETRSDRDITKCGVYAYADSPYFAITLMSVSIDDGAVQLYDLANGDRVPEDIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100 L DE+V+ A N FER+ + L G + W CT + Sbjct: 61 TALVDESVVKRAFNVNFERVCLSRYLREEYPQIFRSYSIDADTVGDYLSPVGWQCTMIHC 120 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG--SIDSPPYDCTRANHVQAWQL 158 RT GL S+L +A AL + KM EGKALI FC ++D P + A+ + W+ Sbjct: 121 RTLGLSSTLASAGAALKLEQQ--KMPEGKALIKYFCVPYDTVDGIPQFHSPADAPEKWET 178 Query: 159 FGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 F Y K+DVEA + +RL P+ D + + LDQ INDRG R+D++LV L AQ Sbjct: 179 FKAYNKQDVEAELAIDRRLSRFPVPDFIWEQFYLDQEINDRGIRVDMELVEAALTLDAQA 238 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L ++ +LT I + Y L +L G + + +K +L + K Sbjct: 239 KATLSSEMRRLTG--IENPNSVYQLLEWL-GEQGYKSDCLDKAAVKELLK--TVKDPVKS 293 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ RL S S++ K + A SD R RG FYGASRTGRW+G + Q QNLP+ Sbjct: 294 VLELRLMLSKSSVKKYQAMQTAACSDSRARGMFSFYGASRTGRWAGRIIQLQNLPQNHIP 353 Query: 337 EEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + + + + D S +R+ + G K ++AD + IEARV+AW+ Sbjct: 354 DLTEARNTVKYGYYDEVEMFYGDVPDTLSQLIRTAFVPRPGYKFIIADFSAIEARVIAWL 413 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKT 450 AGE W++ AFANG DIY + +K F P+ K V+ E R GKV ELA GY G K Sbjct: 414 AGEKWRMDAFANGADIYCASASKMFGVPVVKHGVNGELRQKGKVAELACGYGGSVGAMKA 473 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 M + + + DW A Sbjct: 474 MGGDALNLSDSELKQIVT-----DWRDASP------------------------------ 498 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 +++ W + + +++ + + + + I LPS R+L Y Sbjct: 499 -----NIVKFWWTVDDAVKKAIKQKITTETHGLQ------FSYQSKMLFITLPSGRKLCY 547 Query: 571 SDVKGD--------CSYLN-TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + + +Y+ A+ + R +YG K ENIVQA++RD+L M+ T Sbjct: 548 AHPQIGENQFGGESVTYMGVGASKKWERIESYGPKFVENIVQAVARDLLMFSMQ--TMRC 605 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 IV +HDE++ E S+ +C M + P+WA+GL L+A+GYE + YRK Sbjct: 606 CFIVGHIHDEMIIEADR--RMSLDEVCRQMERTPAWAEGLLLRADGYECEFYRK 657 >gi|41179402|ref|NP_958711.1| Bbp42 [Bordetella phage BPP-1] gi|45569535|ref|NP_996604.1| DNA polymerase [Bordetella phage BMP-1] gi|45580786|ref|NP_996652.1| DNA polymerase [Bordetella phage BIP-1] gi|40950141|gb|AAR97707.1| Bbp42 [Bordetella phage BPP-1] Length = 688 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 277/694 (39%), Positives = 369/694 (53%), Gaps = 26/694 (3%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MS LF+D+ET P+ G AYAE+A + L AYA D+ PV +WD MP DL Sbjct: 1 MSTLFLDLETYCEVPIQN-GTHAYAEKAEVLLFAYALDNGPVYVWDAASGEKMPDDLRWA 59 Query: 61 LRDETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L DE V AHNS F+R + + + + RW T V A + LP +L + C L Sbjct: 60 LIDENVALCAHNSHFDRTVLRHAMPDYPLALPRWRDTMVKALAHSLPGALGDLCDILKVP 119 Query: 120 EHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K + GK LI FCK S TR H W F EY D+EA R + ++L Sbjct: 120 TDKAKDKAGKQLIMLFCKPRPATSKLRRATRETHPAEWAKFVEYAGLDIEAMRVIDQKLP 179 Query: 179 PLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E LW LDQTINDRG +D DL + + +K L +T G ++++ Sbjct: 180 AWNYQGTELALWHLDQTINDRGVMVDTDLAHAAIRAVERTQKVLAARTSDITLGAVQAAT 239 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 Q A+ ++ G+DL DM + TL+ ++ ++ ++L+ RL +S ++ K TL+ Sbjct: 240 QRDAMLRHVLAAYGLDLPDMQQSTLERRIADPDLPAELRELLGIRLQASTTSTSKYKTLA 299 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---I 353 + VSSDGRLRGTLQF GASRTGRW+G +FQPQNLPR ++ + + I AL Sbjct: 300 KGVSSDGRLRGTLQFNGASRTGRWAGRLFQPQNLPRPVLKQDAIERGIAALKADCADLLF 359 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDI 408 A+ + L S +R CI+A GKKLVVADL+ IE R++AW+AGEDWK+ AF G D+ Sbjct: 360 ANVMELTSSAIRGCIVAPEGKKLVVADLSNIEGRMIAWLAGEDWKLAAFREFDDGAGPDL 419 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 Y YAKAF D V K+QR IGKVMEL LGY+GG F T A+ G+DL + Sbjct: 420 YKLAYAKAFAVSPDSVDKDQRQIGKVMELMLGYEGGVGAFLTGAATYGIDLDAMADAAWP 479 Query: 469 TSTFEDWEQAESHHLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + + +AE W +Q +F +K K C+ +K+ WR H V WK+L E Sbjct: 480 SIPADIIAEAEQFLAWRTEQRLGDFGLKPKTF-VVCDALKRLWRRAHPAVSSFWKELEEA 538 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYL--N 581 V G+ R RR + I LPS R L Y + G SY+ N Sbjct: 539 ARLAVLRPGTTYDCRTLKA-----RRDGAWLRIRLPSGRFLCYPSPQLDDAGKLSYMGVN 593 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 + + R +TYGGKL EN+ QA SRD+L M GY IVL+VHDE ++E D Sbjct: 594 QYSRKWSRLKTYGGKLAENVTQAASRDVLAANMPAIEAAGYQIVLSVHDENITEADDRDE 653 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 FS L LM NP WA GLPL A G+EA RYRK Sbjct: 654 FSAAHLAGLMATNPPWAAGLPLAAAGFEAYRYRK 687 >gi|293400006|ref|ZP_06644152.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306406|gb|EFE47649.1| prophage DNA polymerase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 651 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 213/696 (30%), Positives = 337/696 (48%), Gaps = 76/696 (10%) Query: 9 ETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66 ET S L GV+ Y +E I L AYA DDEPVK+ D +PS++L + + + Sbjct: 2 ETYSSVDLISCGVYKYVESEDFEILLFAYAVDDEPVKVVDLACGEKIPSEVLDLIDEPAI 61 Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 + AHN++FER+ + LG + + +W C+ + A GLP+SLK+ L SE KM Sbjct: 62 IKYAHNAVFERLCLSRYLGTQLDTDQWHCSMIHAMMLGLPASLKDVGAVLGLSEDKQKMR 121 Query: 127 EGKALIARFCKGSI----DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IPL 180 GK LI+ FCK + T A+ + WQLF +YC RDVE RE+ +L P+ Sbjct: 122 IGKTLISYFCKPCKPTRVNGQRSRNTPADAPEKWQLFKDYCHRDVETEREISNKLDKFPI 181 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E +LW DQ +ND G RID+++V + + ++L + ++T+GI ++ Sbjct: 182 PASEHELWCWDQKMNDHGARIDMEMVHTVLVFGHRYDEELINECERITNGI--GPKKIAQ 239 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L+ ++ + + + + +L S+I+ + ++ R S ++I K + +V Sbjct: 240 LKEWICRKEDRSIESLDKDAVIELLKDSSISPETRRVLQIRQESGKTSITKYAAIQRSVC 299 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG-- 358 +D RL G LQFYGA+RTGRW+G +FQPQNLPR ++ L + + E++ G Sbjct: 300 NDQRLHGFLQFYGANRTGRWAGRIFQPQNLPRNAFNDIELARKLVKEKDFESLDMLYGSY 359 Query: 359 --LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 + S +R+ +I NG +AD + IEAR+ AW E+W+ + FA IY + A+ Sbjct: 360 NQVFSTLIRTAVIPPNGHMFAIADYSAIEARLTAWFCNEEWRQEVFATTGKIYEASAAQM 419 Query: 417 FNTPIDKVSK--EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 F+ PI+ V+K + R GKV ELALGY GG + M + Q+ Sbjct: 420 FHVPIESVTKGSDLRKKGKVAELALGYGGGVSALERMGGADMGLSEDEMQD--------- 470 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 + WR + ++W + + V+E Sbjct: 471 -------------------------------IVNKWRLASPNIKKMWYRVQDAAYTAVRE 499 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-------DCSYLNTA---- 583 +RV+ V + + LPS RRL Y K + +Y Sbjct: 500 R-----KRVSVVHGVRYFYSSGILFAELPSGRRLAYVRPKLKKGRYGDELTYEGYGSDQD 554 Query: 584 ---TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP-DT 639 T + R++T+GGKL EN++QAI+RD L + M GY I++ +HDE+V E P +T Sbjct: 555 GKQTKKWCRQKTWGGKLFENLIQAIARDCLAKAMLKLDDVGYKIIMHIHDEVVVEVPSET 614 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + +M + WA GL L A+G+ ++ YRK Sbjct: 615 AESCLIDIERIMGEPIPWAPGLILTADGFISEYYRK 650 >gi|257088833|ref|ZP_05583194.1| DNA polymerase [Enterococcus faecalis CH188] gi|256997645|gb|EEU84165.1| DNA polymerase [Enterococcus faecalis CH188] gi|315160597|gb|EFU04614.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315579443|gb|EFU91634.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] Length = 653 Score = 654 bits (1686), Expect = 0.0, Method: Composition-based stats. Identities = 220/706 (31%), Positives = 325/706 (46%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 N + K G LI F CK + + H + WQ F EYC +DV Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ +LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG- 236 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L+ +L G + + + L+ N+ + +++ RL+ S S+ Sbjct: 237 -LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + + Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354 Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E I D +R+ ++A G + +V+D + IEARV+AW A +DW ++ F Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414 Query: 407 DIYVTTYAKAFNTPIDKVS---------KEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IY T A+ F+ + +V+ K+ R GKV LALGYQGG K M Sbjct: 415 KIYEATAAQMFH--LGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG----- 467 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+++ + + + WR ++ + Sbjct: 468 -----------------------------------ALENGIEEHELQDIVDRWRTANKRI 492 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD- 576 W + + +Q GG R L + + I LPS R+L Y+ + Sbjct: 493 KNFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLEQ 547 Query: 577 ------CSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 Y ++TYGGKL ENIVQA +RD+L E M K GY IV VH Sbjct: 548 GDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 608 DEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|281416455|ref|YP_003347375.1| DNA polymerase [Enterococcus phage phiFL4A] gi|270209631|gb|ACZ64170.1| DNA polymerase [Enterococcus phage phiFL4A] Length = 653 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 219/706 (31%), Positives = 325/706 (46%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 N + K G LI F CK + + H + WQ F EYC +DV Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ +LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKELTG- 236 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L+ +L G + + + L+ N+ + +++ RL+ S S+ Sbjct: 237 -LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + + Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354 Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E I D +R+ ++A G + +V+D + IEARV+AW A +DW ++ F Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414 Query: 407 DIYVTTYAKAFNTPIDKVS---------KEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IY T A+ F+ + +V+ K+ R GKV LALGYQGG K M Sbjct: 415 KIYEATAAQMFH--LGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG----- 467 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+++ + + + WR ++ + Sbjct: 468 -----------------------------------ALENGIEEHELQDIVDRWRTANKRI 492 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574 W + + +Q GG R L + + I LPS R+L Y+ Sbjct: 493 KNFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKE 547 Query: 575 ----GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 Y ++TYGGKL ENIVQA +RD+L E M+ + GY IV VH Sbjct: 548 GDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 608 DEAVAEVPEGEK-SIEEMNEIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|71276267|ref|ZP_00652545.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900322|ref|ZP_00682457.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71162875|gb|EAO12599.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729897|gb|EAO31993.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 269/724 (37%), Positives = 367/724 (50%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPAHCTLRRATRDTHPTEWAQFVEYARRDVAAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q A Sbjct: 189 TGAELALWFLDQTINDRGVMVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T++ L + + ++L+ R +S ++ K L S Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G D + Sbjct: 309 GDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHS 428 Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F V+KEQR IGKV EL Sbjct: 429 GEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ ++ + E E+ +Q P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANQRPTFGLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + WK L ++ + + M+ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWKALQFAATDAIRHPETAHT-----CCGITMQYSRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG++ Sbjct: 662 ACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTH 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|227520155|ref|ZP_03950204.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] gi|227072400|gb|EEI10363.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0104] Length = 653 Score = 650 bits (1677), Expect = 0.0, Method: Composition-based stats. Identities = 219/706 (31%), Positives = 322/706 (45%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKHLGVPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 N + K G LI F CK + + H + WQ F EYC +DV Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG- 236 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L+ +L G + + + L+ N+ + +++ RL+ S S+ Sbjct: 237 -LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + + Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354 Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E I + +R+ ++A G + +V+D + IEARV+AW A +DW + F Sbjct: 355 EGIELMYENVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLDVFRTHG 414 Query: 407 DIYVTTYAKAFNTPIDKVS---------KEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IY T A+ F+ + +V+ K+ R GKV LALGYQGG K M Sbjct: 415 KIYEATAAQMFH--LGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG----- 467 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+++ + + + WR ++ + Sbjct: 468 -----------------------------------ALENGIEEHELQDIVDRWRTANKRI 492 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574 W + + +Q GG R L + + I LPS R+L Y+ Sbjct: 493 KNFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKE 547 Query: 575 ----GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 Y ++TYGGKL ENIVQA +RD+L E M K GY IV VH Sbjct: 548 GDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMVRLEKAGYPIVFHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 608 DEAVAEVPEGEK-SIEEMNKIMSIVPDWAEGLPLNAEGFETKYYMK 652 >gi|29374964|ref|NP_814117.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|29342422|gb|AAO80188.1| DNA polymerase, putative [Enterococcus faecalis V583] gi|315574067|gb|EFU86258.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315582012|gb|EFU94203.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] Length = 653 Score = 650 bits (1676), Expect = 0.0, Method: Composition-based stats. Identities = 219/706 (31%), Positives = 324/706 (45%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + L KVGV+ YA+ I L AY+ D +PV+ D T S +P +++ Sbjct: 1 MKTLNIDIETYSDEDLTKVGVYKYADSPNFEILLFAYSVDGQPVECEDLT-ISEIPDEIV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V+ +A N+ FER+ K LG + +W CT V A GLP+SL L Sbjct: 60 AALTDKNVLKIAFNAQFERVCLSKYLGIPYYLDPAQWHCTMVHANELGLPASLGQCAKYL 119 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 N + K G LI F CK + + H + WQ F EYC +DV Sbjct: 120 NIEQQ--KDTRGTQLINFFSKPCKPTKKNGMRTRNLPEHAPEKWQTFIEYCIQDVNVEMA 177 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ + E L+ LDQ INDRG ID +L +++A + ++ LT Sbjct: 178 IANKLNRFPVPESEWKLYTLDQRINDRGAEIDHELATAAIDIMADLSEAGLNEMKALTG- 236 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L+ +L G + + + L+ N+ + +++ RL+ S S+ Sbjct: 237 -LENPNSLAQLKKWL-EEQGTPFEKLGKEVVLKALALGNLPENVAEVLKLRLSLSNSSTK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SD R+ G LQFYGA+RTGRW+G + Q QNLPR SE + + Sbjct: 295 KYLMMDNARCSDNRIHGILQFYGANRTGRWAGRLLQVQNLPRNYLSEIDFARQLVKAKDV 354 Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E I D +R+ ++A G + +V+D + IEARV+AW A +DW ++ F Sbjct: 355 EGIELMYEDVPDTLKQLIRTGLVAKEGHRFIVSDFSAIEARVIAWYAKQDWVLEVFRTHG 414 Query: 407 DIYVTTYAKAFNTPIDKVS---------KEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 IY T A+ F+ + +V+ K+ R GKV LALGYQGG K M Sbjct: 415 KIYEATAAQMFH--LGEVTDYDWKSHEGKDMRQRGKVATLALGYQGGPGALKAMG----- 467 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+++ + + + WR ++ + Sbjct: 468 -----------------------------------ALENGIEEHELQDIVDRWRTANKRI 492 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK--- 574 W + + +Q GG R L + + I LPS R+L Y+ Sbjct: 493 KNFWHETQKAVIDCLQNGGIKKGPR-----GLKFYKKAGFLFIQLPSGRKLAYAKAHLKE 547 Query: 575 ----GDCSYLNTATS-QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 Y ++TYGGKL ENIVQA +RD+L E M+ + GY IV VH Sbjct: 548 GDYGPAIFYEGQGDKVAFTEQQTYGGKLVENIVQATARDVLAEAMQRLEREGYPIVFHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE V+E P+ S+ + +M+ P WA+GLPL AEG+E K Y K Sbjct: 608 DEAVAEVPEGEK-SIEEMNKIMSVVPDWAEGLPLNAEGFETKYYMK 652 >gi|266623807|ref|ZP_06116742.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] gi|288864379|gb|EFC96677.1| prophage LambdaSa04, DNA polymerase [Clostridium hathewayi DSM 13479] Length = 656 Score = 649 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 199/702 (28%), Positives = 304/702 (43%), Gaps = 74/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIETRS + K G + YA+ I L AY W+++PVK+ D +P L+ Sbjct: 1 MHHLSIDIETRSSIDIGKAGAYKYAQSPDFEILLFAYQWNNDPVKVIDLKNGEELPCWLM 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D V+ A+N+ FE G + P ++W CT G + L A+ Sbjct: 61 QALADPNVIKHAYNAAFEWYCL-NCAGYETPIEQWRCTMAHGLYCGYTAGLDATGKAIGL 119 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELF 174 + K+ GKALI FC K + + + W+LF EYC +DV RE+ Sbjct: 120 PQDKQKLTTGKALIRYFCVPCKPTKTNGSRTWNQPWHDTDKWELFKEYCLQDVVTEREIL 179 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 KRL P+ + E LW +D +N G R+D DL+ + ++L ++ + LT + Sbjct: 180 KRLDLFPMPEEEEHLWQMDVLMNAYGVRVDTDLIEGALYIDQISTQRLTDEAISLTG--L 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 ++ L +L G + ++ + T+ +L N + ++ R ++I K Sbjct: 238 QNPNSAAQLLQWLRD-NGTEADNLQKATVAELLGGIN-PNKVRRMLEIRQQLGKTSIKKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + A R+RG Q+YGA+RTGRW+G + Q QNLPR + + + Sbjct: 296 VAMDTARGEGDRVRGLTQYYGANRTGRWAGRLVQMQNLPRNYLKTLDYARNLVKAKNYDG 355 Query: 353 IA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + + S +R+ I S G K VVAD + IEARV+AW+AGE W + FA I Sbjct: 356 VRILYGNVPDTLSQLIRTAFIPSAGHKFVVADFSAIEARVIAWLAGEQWVNEVFATHGKI 415 Query: 409 YVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y T ++ F P+++++K R GKV LALGYQGG M Sbjct: 416 YEATASQMFGVPVERIAKGNPEYSLRQKGKVATLALGYQGGTSALIAMG----------- 464 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A++ L + + WR + + LW Sbjct: 465 -----------------------------ALQMGLTEEELPDIVQRWRQANPRIKGLWYA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KG 575 + V++ + + + + + LPS R+L Y K Sbjct: 496 IENAALAVMETAQPQGINGLIFALEGDIIYGQSFLTVRLPSGRKLFYPKPFLKENRFEKM 555 Query: 576 DCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 Y T + TYGGK+ ENIVQAI+RD L ++ G +V VHDE++ Sbjct: 556 AVHYYTVGQQTRKWEVTSTYGGKMVENIVQAIARDCLAVTLERIASKGLQVVFHVHDEVI 615 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P +V +C LM + WA GL LK G+E+ Y K Sbjct: 616 IDAPMET--TVEEICDLMAEPIPWAPGLVLKGAGFESSYYMK 655 >gi|258455585|ref|ZP_05703542.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] gi|257862273|gb|EEV85044.1| DNA-directed DNA polymerase [Staphylococcus aureus A5937] Length = 653 Score = 649 bits (1673), Expect = 0.0, Method: Composition-based stats. Identities = 207/706 (29%), Positives = 314/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|283469578|emb|CAQ48789.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] gi|283470753|emb|CAQ49964.1| DNA polymerase [Staphylococcus aureus subsp. aureus ST398] Length = 653 Score = 648 bits (1672), Expect = 0.0, Method: Composition-based stats. Identities = 207/706 (29%), Positives = 313/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D P+ D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L S T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKES--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|282919245|ref|ZP_06326980.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] gi|282317055|gb|EFB47429.1| DNA polymerase bacteriophage-type [Staphylococcus aureus subsp. aureus C427] Length = 653 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 207/706 (29%), Positives = 313/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLK--VATGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258646421|ref|ZP_05733890.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] gi|260403824|gb|EEW97371.1| prophage LambdaSa04, DNA polymerase [Dialister invisus DSM 15470] Length = 656 Score = 648 bits (1671), Expect = 0.0, Method: Composition-based stats. Identities = 200/702 (28%), Positives = 304/702 (43%), Gaps = 74/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G++ Y E + L AYA+D V + D + +P ++ Sbjct: 1 MKHLSIDIETFSDVDIKKSGLFKYCESPVFELLLFAYAYDFGDVHVVDLAQGEKIPDSVI 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L + V+ A+N+ FE + G ++W CT + G P+ L AL Sbjct: 61 SDLNNPEVIKHAYNASFEITGLNRY-GYATSPEQWRCTMLHGLYLGYPAGLAFLGAALGI 119 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATRELF 174 E K+ GKALI FC + + + W LF EY +DV E + Sbjct: 120 PEDKRKLSTGKALIRYFCVPCKPTKRNGGRTRNLPKHDIDKWHLFKEYNAQDVVTEMEDY 179 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ +D W++D +N RG ++D+DLV + Q + +L E +++T + Sbjct: 180 RRLSAYPVPGWVQDDWVIDYELNRRGIQLDMDLVRGALAIDDQHKTELVEKAIQITG--L 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L ++ + + L +++ T+ L +++ R A + S+I K Sbjct: 238 TNPNSRNQLLTWINDNSDLKLEKLTKETVAESLQ--IAEDQVAEVLHIRRALAKSSISKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 ++ AV +DGR+RG LQFYGA+RTGRW+G + Q QNLP + I+ + G Sbjct: 296 ESMKNAVCADGRIRGVLQFYGANRTGRWAGRLVQVQNLP--HDVPVAMDTAIRLVKNGNA 353 Query: 353 IADPLGLA------SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 L S +R+ +A G L V+D + IEARVL+W+A E W+ FA G Sbjct: 354 RGVKLMYGHISTSLSHLIRAAFVAPEGSLLCVSDFSAIEARVLSWLADEKWRQDVFAKGG 413 Query: 407 DIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 DIY + + F P++K ++ R GKV ELALGYQGG TM Sbjct: 414 DIYCASASSMFGVPVEKHGINGHLRQKGKVAELALGYQGGPPALITMG------------ 461 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A+K L + WR + + W D+ Sbjct: 462 ----------------------------ALKQGLTEDELPDIVHRWRGANPRICGFWYDV 493 Query: 525 TEGFACVVQEGGSISARRVANVPRLVMRRHKRD-VHIVLPSSRRLVYSDV--------KG 575 V+ + + + R + D + I LPS R+L Y K Sbjct: 494 DGAALSVMSDARPVGLPHGILISRECNLLYGYDYLTIRLPSGRKLYYPQPYINENQFGKP 553 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 Y A + TYGGKL ENI QAI+RD L + K GY ++ +HDE+V E Sbjct: 554 ALHYRVQAGIKWSHTSTYGGKLVENITQAIARDCLALAINRLVKAGYKPLMHIHDEVVLE 613 Query: 636 TPDTP--YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 P + + +M WA GL L A+G+ + Y K Sbjct: 614 VPKDKIHEDEIDRINQIMCAPIPWAPGLLLNADGFISPYYTK 655 >gi|170730324|ref|YP_001775757.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965117|gb|ACA12127.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 726 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 266/724 (36%), Positives = 363/724 (50%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAELLLFAYAIGNGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GIDIP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GIDIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTDWAQFVEYARRDVAAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 S E LW LDQTINDRG +D DL + + + L LT G ++++ Q A Sbjct: 189 SGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKCTLAHRTEALTGGAVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T++ L + + ++L+ R +S ++ K L S Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G D + Sbjct: 309 RDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHS 428 Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F V+KEQR IGKV EL Sbjct: 429 GEAITHGALRGAPITLQRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ ++ + E E+ +Q P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANQRPTFGLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQFAATDAIGHPETAHT-----CCGITVQYSRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDE+++E D F+ L +LM P WA+GLPL AEG++ Sbjct: 662 ACMPAIEAAGYAIVLTVHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTH 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|262049890|ref|ZP_06022752.1| putative DNA polymerase [Staphylococcus aureus D30] gi|259162039|gb|EEW46619.1| putative DNA polymerase [Staphylococcus aureus D30] Length = 653 Score = 647 bits (1670), Expect = 0.0, Method: Composition-based stats. Identities = 207/706 (29%), Positives = 313/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKADNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLK--VATGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVIEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|71901326|ref|ZP_00683422.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728910|gb|EAO31045.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 645 bits (1664), Expect = 0.0, Method: Composition-based stats. Identities = 266/724 (36%), Positives = 365/724 (50%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA L AYA D PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQRLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F +Y +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q A Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T++ L + + ++L+ R +S ++ K L S Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G D + Sbjct: 309 GDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K++AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHS 428 Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 GEDIY YA +F V+K+QR IGKV EL Sbjct: 429 GEAITHGALRGAPITLQWNAEHEPIRKGEDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ ++ + E E+ + P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANHRPTFGLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|284024530|ref|ZP_06378928.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 132] Length = 653 Score = 645 bits (1663), Expect = 0.0, Method: Composition-based stats. Identities = 206/706 (29%), Positives = 312/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K GV+ Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDTEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKYFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLK--VATGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|66395454|ref|YP_239831.1| ORF004 [Staphylococcus phage 2638A] gi|62635881|gb|AAX90992.1| ORF004 [Staphylococcus phage 2638A] Length = 653 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 206/706 (29%), Positives = 306/706 (43%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D PV D T+ P Sbjct: 1 MKYMNIDIETYSSNDISKCGAYKYVEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER+ + ++P + W CT V GLP+SL Sbjct: 61 YETFKIALFDPEVRKYAFNANFERVCLAQHFNKEMPPEEWTCTMVNVTRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 LN K + GK LI F CK + + H + WQ F +YC RDVE Sbjct: 121 EVLNL--QNQKDKAGKNLIRYFSVPCKPTKVNGGRTRNLPQHDPKKWQQFIDYCVRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W LDQ INDRG ++ L+L EL + +L + K+ Sbjct: 179 EMSIATKIKDFPVTKEEQKYWSLDQHINDRGIKLSKSLMLGANELDKISKAELLKQATKI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L ++ T AK ++ RL S + Sbjct: 239 TG--LENPNSPSQLLKWLNEEQGLDIPNLQKKTVQEYLKYA--TGKAKQMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + D R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCGDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELNIARDFI 353 Query: 348 NRGETIAD-------PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLDIHPQDLLSQLVRTTFTAEEGYALAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + A+ F P+D + K R GKV ELALGYQGG K M Sbjct: 414 VFNTHGKIYEASAAQMFGVPVDSIKKGDPLRQKGKVSELALGYQGGPGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A+ + + + + +WR + ++ Sbjct: 468 ----------------------------------ALDMGIDESELQGLVDSWRKANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 WK + V+ R+ L K + I LPS R L Y + + Sbjct: 494 AFWKGCQDAAIETVR------TRQTHLTHGLRFYMKKGFLMIELPSGRSLAYPKARVGEN 547 Query: 579 YLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 + + + +TYGGKL ENIVQA +RD+L M G+ IV VH Sbjct: 548 SWGSPVVEFMGLDLNRKWTKLKTYGGKLVENIVQATARDLLAISMYRIEHAGFSIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E PD + + ++M+K WA+GL L ++G+ + Y K Sbjct: 608 DEVIVEIPDGSGG-LKAIENIMSKPVKWAEGLKLNSDGFTSPFYMK 652 >gi|71899884|ref|ZP_00682032.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730324|gb|EAO32407.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 644 bits (1661), Expect = 0.0, Method: Composition-based stats. Identities = 264/724 (36%), Positives = 365/724 (50%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHSLPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F +Y +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q A Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T++ L + + ++L+ R +S ++ K L S Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G + QP NLPR S+ ++ I A+ G D + Sbjct: 309 GDGRLRGTLQFNGASRTGRWAGRLLQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHS 428 Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F V+K+QR IGKV EL Sbjct: 429 GEAITHGALRGAPITLQWNAEHEPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ ++ + + E+ +Q P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQQAMEALQWTKANQRPTFGLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 662 ACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|160937655|ref|ZP_02085015.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] gi|158439300|gb|EDP17052.1| hypothetical protein CLOBOL_02545 [Clostridium bolteae ATCC BAA-613] Length = 661 Score = 644 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 214/709 (30%), Positives = 335/709 (47%), Gaps = 86/709 (12%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPS----D 56 + +DIET S + + GV+AYA I L Y +D + VK+ D T+ A P D Sbjct: 2 TMNVDIETYSSIDIREAGVYAYASAPDFEILLIGYRYDGQDVKVIDLTDPLADPERDFPD 61 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L V+ A+N+ FER LG +P ++W CT+V A T GLP +L AL Sbjct: 62 FWEGLYSPDVIKTAYNANFERTCLASWLGRPMPPEQWRCTAVHAATLGLPGTLGGVGEAL 121 Query: 117 NFSEHLTKMEEGKALIARFCKGSID---SPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 E K + GK+LI FCK + H WQLF EY ++DV A Sbjct: 122 GLPEDKQKDKIGKSLIQYFCKPCKPTKTNGMRSRNLPEHAPDKWQLFIEYNRQDVVAEAT 181 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L P++ E++LW LDQ IND G R+D+DL K+ + +++L ++ KLT Sbjct: 182 IREKLQIYPVARQEQELWNLDQHINDHGVRLDMDLADKIIQYDGIYQERLKQEARKLTG- 240 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI--------LSHSNITQLAKDLILNRL 282 + + L+M+ F+ G+D+ +++ ++ I +H + L ++ R Sbjct: 241 -LNNPNSLPQLKMWFFMTYGLDVPSITKDSIPVIEAQLKELKTTHDVLPGL--RMLQIRK 297 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 +++ K + AV DG LRG LQFYGA+RTGRW+G + Q NLP+ + + L + Sbjct: 298 ELGKTSVKKYQAMRHAVCPDGYLRGILQFYGANRTGRWAGRIVQVHNLPQNKIPDLDLAR 357 Query: 343 TIQALNRGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + +T+ + S +R+ I S G + VV+D + IEARV+AW+A E W+ Sbjct: 358 DLVKQEDFDTLELLFEGIPFVFSQLIRTAFIPSEGYRFVVSDFSAIEARVIAWLADEKWR 417 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCG 456 + F IY + A+ F+ PI+ + K R GKV ELALGY GG K M Sbjct: 418 LNVFRTHGKIYEASAAQMFHVPIENIKKGSRLRQQGKVAELALGYGGGFGAMKAMDKAGT 477 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + ++ WR Sbjct: 478 IPDDEI-----------------------------------------PMIIANWRKASPN 496 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + +LW++ ++E +I + L R + I LPS R+L Y D + + Sbjct: 497 ICKLWRNAEAAARAAIEERRTIKLK-----HGLSFSYINRILFIGLPSGRKLAYYDTRIE 551 Query: 577 --------CSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 +Y T + R +T+GGKL ENIVQA +RD L M+ + GY IV+ Sbjct: 552 DDEKGKSVITYAGVDQETKKWGRLKTWGGKLVENIVQATARDCLAVTMERVSGAGYQIVM 611 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEI+ + P+T ++ + ++M + WA+ LPL+ +GYE Y+K Sbjct: 612 HVHDEIIVDVPETDIDALEKITAIMAQPVPWAQELPLRGDGYETPFYKK 660 >gi|157311150|ref|YP_001469195.1| polymerase [Streptococcus phage P9] gi|119104299|gb|ABL61044.1| polymerase [Streptococcus phage P9] Length = 640 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 217/697 (31%), Positives = 320/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ +T Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKAITG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LANPNSRAQLLPWL-KEHGYSANGLTKADVEQELKTAEGE--LKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + +D VR+ ++A +G V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + +L R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545 Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GY +V VHDE + E Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|139473888|ref|YP_001128604.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209559298|ref|YP_002285770.1| DNA polymerase [Streptococcus phage NZ131.2] gi|134272135|emb|CAM30380.1| putative phage DNA polymerase [Streptococcus pyogenes str. Manfredo] gi|209540499|gb|ACI61075.1| DNA polymerase [Streptococcus phage NZ131.2] Length = 640 Score = 643 bits (1658), Expect = 0.0, Method: Composition-based stats. Identities = 217/697 (31%), Positives = 320/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G + +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRAQLLPWL-KEHGYSVNGLTKADVEQELKTAEGE--LKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + +D VR+ ++A + V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + +L R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545 Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GY +V VHDE + E Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|21283154|ref|NP_646242.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300911890|ref|ZP_07129333.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|21204594|dbj|BAB95290.1| DNA polymerase [Staphylococcus aureus subsp. aureus MW2] gi|300886136|gb|EFK81338.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH70] gi|315197712|gb|EFU28046.1| DNA polymerase [Staphylococcus aureus subsp. aureus CGS01] Length = 653 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 204/706 (28%), Positives = 311/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + + K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|225871341|ref|YP_002747288.1| phage DNA polymerase [Streptococcus equi subsp. equi 4047] gi|225700745|emb|CAW95387.1| putative phage DNA polymerase [Streptococcus equi subsp. equi 4047] Length = 640 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 217/697 (31%), Positives = 319/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 + K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLVQE--KDTSGKNLIRYFSLPCKPSKANGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G + +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRAQLLPWL-KEHGYSVNGLTKADVEQELKTAEGE--LKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + +D VR+ ++A + V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDCCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + +L R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545 Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GY +V VHDE + E Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYGVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|21910979|ref|NP_665247.1| DNA polymerase A domain-containing protein [Streptococcus pyogenes MGAS315] gi|28876473|ref|NP_795675.1| putative DNA polymerase A domain [Streptococcus pyogenes phage 315.6] gi|28895334|ref|NP_801684.1| DNA polymerase [Streptococcus pyogenes SSI-1] gi|50913380|ref|YP_059352.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] gi|21905187|gb|AAM80050.1| putative DNA polymerase A domain - phage-associated [Streptococcus pyogenes MGAS315] gi|28810580|dbj|BAC63517.1| putative DNA polymerase [Streptococcus pyogenes SSI-1] gi|50902454|gb|AAT86169.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 640 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 216/697 (30%), Positives = 319/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG + +W CT VLA+ GLPSSL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPCQWQCTMVLAQELGLPSSLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK S + H + WQ+F +YC +DV Sbjct: 119 KLAQE--KDTSGKNLIRYFSLPCKPSKTNGGRTRNLPEHAPEKWQMFIDYCIQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRTQLLPWL-KEHGYSASGLTKADVEKELKTAEGE--LKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERARCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + +D VR+ ++A +G V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ + + +L R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPV------RLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIVY 545 Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + G+ +V VHDE + E Sbjct: 546 EGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLTIEEVNDLMAQAPEWAEGLPLNSEGYITKYYMK 639 >gi|257428253|ref|ZP_05604651.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|258419942|ref|ZP_05682901.1| DNA polymerase [Staphylococcus aureus A9719] gi|282905878|ref|ZP_06313733.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282928293|ref|ZP_06335897.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] gi|257275094|gb|EEV06581.1| DNA polymerase [Staphylococcus aureus subsp. aureus 65-1322] gi|257844067|gb|EEV68457.1| DNA polymerase [Staphylococcus aureus A9719] gi|282331170|gb|EFB60684.1| DNA polymerase [Staphylococcus aureus subsp. aureus Btn1260] gi|282591964|gb|EFB96997.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9765] Length = 653 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|262053228|ref|ZP_06025380.1| putative DNA polymerase [Staphylococcus aureus 930918-3] gi|259158878|gb|EEW43970.1| putative DNA polymerase [Staphylococcus aureus 930918-3] Length = 653 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYIKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|329730633|gb|EGG67018.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 653 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 312/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|258448861|ref|ZP_05696971.1| DNA polymerase [Staphylococcus aureus A6224] gi|257857898|gb|EEV80789.1| DNA polymerase [Staphylococcus aureus A6224] Length = 653 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 204/706 (28%), Positives = 311/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT + + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMINSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|237738628|ref|ZP_04569109.1| DNA polymerase [Fusobacterium sp. 2_1_31] gi|229424111|gb|EEO39158.1| DNA polymerase [Fusobacterium sp. 2_1_31] Length = 656 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 211/702 (30%), Positives = 322/702 (45%), Gaps = 74/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA + I L AY+ D + VK+ D + A+P ++L Sbjct: 1 MRTLNIDIETFSSVDIGKSGAYKYAMSDDFQILLFAYSVDGQDVKIIDLAQGEAIPGEVL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+DET + A+N++FE GI+ P ++W CT V G + L A+ Sbjct: 61 DLLKDETCIKYAYNAVFEWWCLNMA-GIETPLEQWHCTMVHGLYCGYTAGLAAIGNAMGL 119 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K+ G ALI FC + + +H + W+LF EYC +DV E+ Sbjct: 120 PQDKKKLTTGSALIRYFCIPCNPTKSNGNRTRNLPHHAPEKWELFKEYCIQDVVTEMEIG 179 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ + E LW+LD +N G R+D +LV + A R L E+ +T + Sbjct: 180 RRLSAFPVPEREWKLWVLDTFMNAYGVRVDSELVNGALYIDALSRANLLEEARDITK--L 237 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L +L G ++ ++ + T+ ++ + + AK ++ R S +++ K Sbjct: 238 DNPNSTSQLLNWL-EEAGEEVENLQKATVGKMIDTLDDGK-AKRVLEIRQELSKTSVKKY 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 + EA+ D R+RG LQFYGA+RTGR++G + Q QNLPR + + + GE Sbjct: 296 KAMDEAMCKDERVRGLLQFYGANRTGRYAGRLVQVQNLPRNYIETLDVARDVIKKGDGEL 355 Query: 353 IADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + G S +R+ I S G VV+D + IEARV+AW+AGE+W+++ F I Sbjct: 356 LEMLYGNIPDTLSQLIRTAFIPSEGNHFVVSDFSAIEARVIAWLAGEEWRMEVFKTHGKI 415 Query: 409 YVTTYAKAFNTPIDKVSK-----EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 Y + ++ F PI+ ++K RA GKV ELALGYQG M + + Sbjct: 416 YEASASQMFGVPINTIAKGEENYHLRAKGKVAELALGYQGSVGALTAMGAADMGLTDEEM 475 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 ++ + WR + +++LW Sbjct: 476 KD----------------------------------------IVDRWRKSSKRIVELWYA 495 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KG 575 L V++ G + V + I LPS R+L Y + Sbjct: 496 LENAAVEVLETGEPQIVKCVKLAKEYDFIYGQDFFTIELPSGRKLFYPKPFLKENQFGQM 555 Query: 576 DCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 Y+ N T + TYGGKLTENIVQAI+RD L E + G+ IV VHDEI+ Sbjct: 556 QMHYMGINQTTKKWEVIPTYGGKLTENIVQAIARDCLAETLLRVKAKGWPIVFHVHDEII 615 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P + + + MT+ SWAKGL L A G+ Y K Sbjct: 616 LDVPKS--VELEEVIKTMTEEISWAKGLILNAAGFTGSYYMK 655 >gi|148267473|ref|YP_001246416.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|150393526|ref|YP_001316201.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] gi|147740542|gb|ABQ48840.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH9] gi|149945978|gb|ABR51914.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JH1] Length = 653 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|282926447|ref|ZP_06334079.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] gi|282591776|gb|EFB96847.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A10102] Length = 653 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 204/706 (28%), Positives = 311/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WA+GL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVEWAEGLNLNSDGFTSPFYMK 652 >gi|66395659|ref|YP_240050.1| ORF003 [Staphylococcus phage 47] gi|282911107|ref|ZP_06318909.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|297207805|ref|ZP_06924239.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|62636083|gb|AAX91194.1| ORF003 [Staphylococcus phage 47] gi|282324802|gb|EFB55112.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|296887521|gb|EFH26420.1| bacteriophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|312438063|gb|ADQ77134.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH60] gi|329724432|gb|EGG60942.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 653 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|49485814|ref|YP_043035.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] gi|49244257|emb|CAG42684.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MSSA476] Length = 653 Score = 642 bits (1655), Expect = 0.0, Method: Composition-based stats. Identities = 204/706 (28%), Positives = 312/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKAEQGLDIPNLQKKTVQDYLKRA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + +D R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCNDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPKDSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|66395591|ref|YP_239981.1| ORF003 [Staphylococcus phage 3A] gi|62635937|gb|AAX91048.1| ORF003 [Staphylococcus phage 3A] Length = 650 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 206/703 (29%), Positives = 311/703 (44%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIET S + K GV+ Y AE I + AY+ D P+ D T+ P Sbjct: 1 MNIDIETYSSNDISKCGVYKYTEAEDFEILIIAYSIDGGPISAIDMTKVDNEPFHADYET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 179 IANKIKDFPVTVIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLK--VATGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353 Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + +WR + ++ W Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYL 580 K E ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + +TYGGKL ENIVQA +RD+L + G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEV 607 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|297590990|ref|ZP_06949628.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] gi|297575876|gb|EFH94592.1| prophage LambdaSa04 DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MN8] Length = 653 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 312/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE+ I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLNNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|273810426|ref|YP_003344897.1| DNA polymerase A [Xylella phage Xfas53] gi|257097801|gb|ACV41107.1| DNA polymerase A [Xylella phage Xfas53] Length = 726 Score = 641 bits (1654), Expect = 0.0, Method: Composition-based stats. Identities = 267/724 (36%), Positives = 362/724 (50%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGGGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q A Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T++ L + + ++L+ R +S ++ K L S Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G D + Sbjct: 309 RDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWHS 428 Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F V+K+QR IGKV EL Sbjct: 429 GEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ + + E E + P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAAQ-AALPPLLLQEATELLEWTKANHRPTFGLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|257432437|ref|ZP_05608800.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] gi|257283316|gb|EEV13448.1| DNA polymerase [Staphylococcus aureus subsp. aureus E1410] Length = 653 Score = 641 bits (1653), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 311/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|71898927|ref|ZP_00681094.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731339|gb|EAO33403.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 726 Score = 641 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 267/724 (36%), Positives = 364/724 (50%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F +Y +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVAAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q A Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T++ L + + ++L+ R +S ++ K L S Sbjct: 249 LLHHLSTEHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G D + Sbjct: 309 GDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHS 428 Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F V+K+QR IGKV EL Sbjct: 429 GEAITHGALRGAPITLQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ + + E E + P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAAQ-AALPPLLLQEATELLEWTKANHRPTFGLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 662 ACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|49483719|ref|YP_040943.1| DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] gi|49241848|emb|CAG40540.1| putative DNA polymerase [Staphylococcus aureus subsp. aureus MRSA252] Length = 653 Score = 640 bits (1651), Expect = 0.0, Method: Composition-based stats. Identities = 205/706 (29%), Positives = 312/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE+ I + AY+ D + D T+ P Sbjct: 1 MRFMNIDIETYSSNDISKCGAYKYTEAEEFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 FETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKNDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|28199026|ref|NP_779340.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28199602|ref|NP_779916.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681748|ref|YP_001829908.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182682343|ref|YP_001830503.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057124|gb|AAO28989.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057717|gb|AAO29565.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182631858|gb|ACB92634.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|182632453|gb|ACB93229.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578624|gb|ADN62593.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] gi|307580177|gb|ADN64146.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 726 Score = 640 bits (1650), Expect = 0.0, Method: Composition-based stats. Identities = 267/724 (36%), Positives = 363/724 (50%), Gaps = 61/724 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA + PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGEGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GISIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F EY +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVEYARRDVTAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q A Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T++ L + + ++L+ R +S ++ K L S Sbjct: 249 LLHHLSTAHGVALPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+E +T I A+ G D + Sbjct: 309 RDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQEAITVGIDAMKAGCVDLVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLHAFGEFDTCQGVDGTWHS 428 Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F V+K+QR IGKV EL Sbjct: 429 GEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ + + E E + P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAAQ-AALPPLLLQEATELLEWTKANHRPTFGLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTRITTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 M GY IVLTVHDEI++E D F+ L +LM P WA+GLPL AEG+E Sbjct: 662 ACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFETH 721 Query: 672 RYRK 675 RYRK Sbjct: 722 RYRK 725 >gi|94989082|ref|YP_597183.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] gi|94542590|gb|ABF32639.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS9429] Length = 640 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 217/697 (31%), Positives = 320/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG + +W CT VLA+ GLP+SL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK + + H WQ+F YC +DV Sbjct: 119 KLAQE--KDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D ++ DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRAQLLPWL-KEHGYSANGLTKADVEQELKKAEGE--LKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + +D VR+ ++A +G V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + V WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGVVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + ++ R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKIRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545 Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GYD+V VHDE + E Sbjct: 546 EGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + LM++ P WA+GLPL +EGY K Y K Sbjct: 603 GSGLIIEEVNDLMSQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|315128370|gb|EFT84381.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus CGS03] Length = 653 Score = 639 bits (1649), Expect = 0.0, Method: Composition-based stats. Identities = 204/706 (28%), Positives = 312/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDDEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ + G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKERWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|71911263|ref|YP_282813.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94992973|ref|YP_601072.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] gi|71854045|gb|AAZ52068.1| phage-encoded DNA polymerase [Streptococcus pyogenes MGAS5005] gi|94546481|gb|ABF36528.1| phage-related DNA polymerase [Streptococcus pyogenes MGAS2096] Length = 640 Score = 639 bits (1647), Expect = 0.0, Method: Composition-based stats. Identities = 216/697 (30%), Positives = 319/697 (45%), Gaps = 80/697 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K GV+ YA E I L AY+ D V+ D T QS +P D+ Sbjct: 1 MRHLNIDIETYSSNDI-KNGVYKYADAEDFEILLFAYSIDGGEVECLDLTRQS-LPEDIK 58 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D+ V A N+ FER+ + LG + +W CT VLA+ GLP+SL+ L L Sbjct: 59 DMLFDDKVRKHAFNAQFERVCLSRYLGLPYYLDPAQWQCTMVLAQELGLPASLEKCALYL 118 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K GK LI F CK + + H WQ+F YC +DV Sbjct: 119 KLAQE--KDAAGKNLIKYFSVPCKPTKANGGRTRNLPEHDPGKWQMFINYCMQDVVVEMA 176 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++L +P+ D E D ++ DQ INDRG +D +LV + + L ++ LT Sbjct: 177 IAEKLESVPVHDREWDYYVCDQRINDRGVALDKELVASALYCKDVKMESLSGELKALTG- 235 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G +++ ++ L + K ++ +L ++ S++ Sbjct: 236 -LDNPNSRAQLLPWL-KEHGYSANGLTKADVEQELKKAEGE--LKRVLELKLQTAMSSLK 291 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 292 KYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDAREYVKKRDI 351 Query: 351 ETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + + +D VR+ ++A +G V+D + IEARV+AW AGE W++ F+ Sbjct: 352 DAVEILYDSLNDTLKQLVRTALVAKDGYTFYVSDFSAIEARVIAWFAGEQWRLDVFSTHG 411 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 412 KIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG-------------- 457 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + + + WR ++ ++Q WKD+ Sbjct: 458 --------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWKDVQR 491 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD-------CSY 579 ++ I + ++ R K + I LPS R L Y+ K + Y Sbjct: 492 AAIKAIKSRAPI------KLGKIRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGDKIIY 545 Query: 580 LNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPD 638 + TYGGKL ENIVQA +RDIL E + GYD+V VHDE + E Sbjct: 546 EGQGDRAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGYDVVFHVHDEAIIE--- 602 Query: 639 TPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + + LM + P WA+GLPL +EGY K Y K Sbjct: 603 GSGLIIEEVNDLMAQAPEWAEGLPLNSEGYVTKYYMK 639 >gi|258445211|ref|ZP_05693406.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] gi|257855972|gb|EEV78892.1| DNA-directed DNA polymerase [Staphylococcus aureus A6300] Length = 653 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 203/706 (28%), Positives = 312/706 (44%), Gaps = 85/706 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMTIAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ + G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTSEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +R++L + +G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARELLAISIARLEASGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 652 >gi|215401125|ref|YP_002332380.1| putative DNA polymerase [Staphylococcus phage phiSauS-IPLA35] gi|215260476|gb|ACJ64606.1| gp17 [Staphylococcus phage phiSauS-IPLA35] Length = 650 Score = 638 bits (1645), Expect = e-180, Method: Composition-based stats. Identities = 204/703 (29%), Positives = 311/703 (44%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MNIDIETYSNNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPDVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 179 IANKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKDQ 353 Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 THGKIYEASASQMFNVPVESITKGDSLRQKGKVSELALGYQGGAGALKAMG--------- 464 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + +WR + ++ W Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580 K E ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 IVEIPKDSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|87161801|ref|YP_494120.1| phage related DNA polymerase family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509702|ref|YP_001575361.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848501|ref|ZP_06789247.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|87127775|gb|ABD22289.1| phage related DNA polymerase, family A [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368511|gb|ABX29482.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294824527|gb|EFG40950.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A9754] gi|302333141|gb|ADL23334.1| bacterophage DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus JKD6159] gi|320140648|gb|EFW32502.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320142780|gb|EFW34583.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] Length = 650 Score = 638 bits (1645), Expect = e-180, Method: Composition-based stats. Identities = 203/703 (28%), Positives = 310/703 (44%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T Sbjct: 179 IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353 Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + +WR + ++ W Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580 K E ++ +R+ + + K + I LPS R L Y G+ S+ Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGVRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|295407651|ref|ZP_06817440.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297246752|ref|ZP_06930567.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] gi|294967465|gb|EFG43505.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8819] gi|297176378|gb|EFH35651.1| DNA polymerase bacteriophage-type [Staphylococcus aureus A8796] Length = 650 Score = 637 bits (1644), Expect = e-180, Method: Composition-based stats. Identities = 204/703 (29%), Positives = 310/703 (44%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T Sbjct: 179 IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353 Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + +WR + ++ W Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580 K E ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|168179450|ref|ZP_02614114.1| DNA polymerase [Clostridium botulinum NCTC 2916] gi|182669649|gb|EDT81625.1| DNA polymerase [Clostridium botulinum NCTC 2916] Length = 653 Score = 637 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 219/702 (31%), Positives = 324/702 (46%), Gaps = 77/702 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPS--D 56 M L ID+ET + VG + Y E I L AYA+DDEPVK+ D +P + Sbjct: 1 MRTLAIDVETYCELDIKSVGAYKYCEHPSFEIMLLAYAYDDEPVKIIDIMNGEKIPEVLE 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 Y V+ A N+ FER K G+ W CT V A T GLPSSL A Sbjct: 61 FDIYEHYSKVLKTAFNANFERNAIKAHFKGLKCHPGDWECTMVKALTLGLPSSLDMVGKA 120 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATR 171 L F E KM+EGKALI FCK + + ++ W+ F EYCKRDVE R Sbjct: 121 LKFEEDKQKMKEGKALIQYFCKPCKPTKTNGKRTRNLPEHDMEKWETFKEYCKRDVEVER 180 Query: 172 ELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+ L + E++LW LDQ INDRG R+DL LV + +++L E+ + LT Sbjct: 181 EIRNLLNRYKTTIKEKELWQLDQHINDRGVRVDLVLVENAIKCDESYQERLKEEAINLTG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L+ ++ G ++ +++ ++ ++ S + K ++ R + ++I Sbjct: 241 --LNNPNSPTQLKKWISERVGHEVTSLTKDSIPILIEESK-DKNVKKILELRQLMAKTSI 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K T+ A D R+RG LQFYGA+RTGRW+G + Q QNLP+ + + + Sbjct: 298 KKYQTMLNARCDDERVRGLLQFYGANRTGRWAGRLVQVQNLPQNHLPDLEEARNLLRNGD 357 Query: 350 GETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 ETI S +R+ I ++G + +VAD + IEARV+A++A E W++ F G Sbjct: 358 FETIEFLFDSIPDTLSQLIRTAFIPTDGNRFIVADFSAIEARVIAYLANEQWRLDVFKEG 417 Query: 406 EDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 DIY + +K F P++K ++ RA GK+ ELALGY G + + + Sbjct: 418 GDIYCASASKMFKVPVEKHGINGHLRAKGKIAELALGYGGAGGAIRAFDKTGSIPDEDLP 477 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + V DW +A H + + W + Sbjct: 478 KLVS------DWRKASPH------------------------ITQFW-----------WN 496 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN-- 581 + + + E +++ + + I LPS R+L Y K + Sbjct: 497 VDKAAKKAITEKTTVALH-----HGIKFIYDPGVLFIQLPSGRKLSYLRPKIEEGKFGSD 551 Query: 582 --------TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + Q R TYG KL ENIVQA +RD L E M K G+ +V+ VHDE+V Sbjct: 552 VITYEGMEQTSKQWKRIETYGPKLVENIVQAFARDCLAETMARVEKKGFKVVMHVHDELV 611 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + SV +CS+ ++ WA GLPLKA+GYE Y K Sbjct: 612 LDVSKE-IGSVEEICSIFAESIEWAPGLPLKADGYECNYYMK 652 >gi|332160957|ref|YP_004297534.1| putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665187|gb|ADZ41831.1| Putative DNA polymerase from bacteriophage origin [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 669 Score = 637 bits (1642), Expect = e-180, Method: Composition-based stats. Identities = 250/674 (37%), Positives = 355/674 (52%), Gaps = 35/674 (5%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP- 89 + YA +D+PV WD T + MP DL YL+D ++ A NS F+R + + + I Sbjct: 1 MIITYALNDDPVSEWDITSGAKMPEDLKAYLQDPSIEIYAQNSHFDRTMMRHDMPSVIAG 60 Query: 90 -SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS-IDSPPYDC 147 +RW T V A +GLP L C L ++ K +EGKALI FCK +S + Sbjct: 61 GIERWRDTMVKALAHGLPGGLGVLCEILGITQDKAKDKEGKALIQLFCKPRAKNSTIHRA 120 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDL 205 T H + W+ F +Y D+EA R + K+L + E LW DQ INDRG ++D L Sbjct: 121 TSKTHPEEWKRFLKYAGNDIEAMRAIDKKLPVWNYQGKELALWHFDQLINDRGVQMDTVL 180 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + E+K L + LTD ++++ Q AL ++ G+DL DM + TL+ + Sbjct: 181 AEAAVTAVVDEQKLLAKRTQNLTDNEVQAATQRDALLRHIVESFGVDLPDMQKSTLERRI 240 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + + ++L+ RL +S ++ K TL + VS DGRLRGTLQF GASRTGRW+G +F Sbjct: 241 ADPELPSVLRELLAIRLQASTTSTSKYKTLLKGVSKDGRLRGTLQFCGASRTGRWAGRLF 300 Query: 326 QPQNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLA 382 QPQNLPR +E + I+AL G + + L S +R CI+A GKKLVV+DL+ Sbjct: 301 QPQNLPRPVLDQETIDTGIEALKAGCADLLFDNVMELISSALRGCIVAPKGKKLVVSDLS 360 Query: 383 GIEARVLAWIAGEDWKIKAF----------------ANGEDIYVTTYAKAFNTPIDKVSK 426 IE RVLAW+AGE+WK++AF G D+Y YA+AFN D V+K Sbjct: 361 NIEGRVLAWLAGEEWKLEAFRDYDTIIGYDEGGEALREGPDLYKLAYARAFNISPDDVTK 420 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 QR IGKVMEL LG+ GG F T A GLDL + + +A+S + Sbjct: 421 LQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNVPTSIQREAQSWYQASV 480 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 Q F + +++ AC+ +K+ WR H + W ++ + R + Sbjct: 481 KQKRTFGLSEQVF-IACDSLKRMWRNAHPETVSFWSEIENTVRRAIINPKQTFVCRKLKI 539 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGD---CSYL--NTATSQLMRERTYGGKLTENI 601 RR + I LPS R + Y ++ + SY+ NT + + R +TYGGKL EN Sbjct: 540 -----RRDGSWLRIQLPSGRSVCYPGIRIEGDKISYMGVNTYSRKWQRLKTYGGKLAENA 594 Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL 661 QA +RD++ M GY+I LTVHDE+++E PDT F+ L L+ NP WA L Sbjct: 595 TQAAARDVMANNMPLIEARGYEITLTVHDEVLTEAPDTDAFTSDKLSELLATNPEWALDL 654 Query: 662 PLKAEGYEAKRYRK 675 PL A G+EA YRK Sbjct: 655 PLSAGGFEAYHYRK 668 >gi|156603970|ref|YP_001429916.1| hypothetical protein SPTP3102_gp21 [Staphylococcus phage tp310-2] gi|154818056|gb|ABS87483.1| hypothetical protein [Staphylococcus phage tp310-2] Length = 650 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 205/703 (29%), Positives = 310/703 (44%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 RLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 179 IANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353 Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + +WR + ++ W Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYL 580 K E ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + +TYGGKL ENIVQA +RD+L + GY IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGYKIVGHVHDEV 607 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVEWAKGLNLNSDGFTSPFYMK 649 >gi|29028629|ref|NP_803318.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|88195276|ref|YP_500079.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|258428683|ref|ZP_05688217.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] gi|18920553|gb|AAL82293.1| DNA polymerase A domain [Staphylococcus phage phi 12] gi|87202834|gb|ABD30644.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|257849738|gb|EEV73702.1| phage encoded DNA polymerase I [Staphylococcus aureus A9299] Length = 650 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 204/703 (29%), Positives = 310/703 (44%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADYET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 RLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 179 IANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353 Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + +WR + ++ W Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYL 580 K E ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGENSWG 547 Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + +TYGGKL ENIVQA +RD+L + G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVHDEV 607 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|323440323|gb|EGA98037.1| phage related DNA polymerase family A [Staphylococcus aureus O11] Length = 650 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 203/703 (28%), Positives = 310/703 (44%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPVHADYET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H + WQ F +YC RDVE Sbjct: 121 RLQSQ--KDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMT 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P+++ E+ W+ DQ INDRG ++ L+L L Q +++L + +T Sbjct: 179 IANKIKDFPVTEIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHITG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353 Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + +WR + ++ W Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580 K E ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + +TYGGKL ENIVQA +RD+L + + + IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASVFKIVGHVHDEV 607 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 649 >gi|209363571|ref|YP_002267989.1| DNA polymerase [Staphylococcus phage phi2958PVL] gi|208973072|dbj|BAG74388.1| DNA polymerase [Staphylococcus phage phi2958PVL] Length = 650 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 204/703 (29%), Positives = 310/703 (44%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHADFET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 RL--QNQKDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEVEMT 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L +T Sbjct: 179 IAHKIKDFPVTAIEQAYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLNQAKHITG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLAWLKDDQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLIKEQ 353 Query: 351 ETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 P L S VR+ A G +L V+D + IEARV+AW A E W++ F Sbjct: 354 RFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLDVFN 413 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 THGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------- 464 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A++ + + + +WR + ++ W Sbjct: 465 -------------------------------ALEMGIEENELQGLVDSWRNANPNIVNFW 493 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYL 580 K E ++ +R+ + L K + I LPS R L Y G+ S+ Sbjct: 494 KACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWG 547 Query: 581 NTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE+ Sbjct: 548 SQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEV 607 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 608 IVEIPRGSNG-LKEIETIMNKPADWAKGLNLNSDGFTSPFYMK 649 >gi|227872576|ref|ZP_03990912.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841577|gb|EEJ51871.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 643 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 214/700 (30%), Positives = 316/700 (45%), Gaps = 83/700 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET S + K G + YA EQ I L AY++D E V++ D +P +L Sbjct: 1 MRHLSIDIETFSDIDIQKAGAYRYAQSEQFRIMLFAYSFDGEEVQVVDLENGEEIPHFIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+D V+ A+N+ FE GI P +W CT V A LP+ L N AL Sbjct: 61 TALQDMEVIKHAYNAAFEWYCL-NCAGIKTPLDQWQCTMVHAMYLSLPAGLANTGEALGI 119 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL- 177 +E K GK LI FC PY W+ F EY ++DV + E+ RL Sbjct: 120 AEDKKKSAVGKQLIRYFCV-----KPYKP----DAVKWKAFKEYNRQDVVSEMEIENRLS 170 Query: 178 -IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 P+ + E + W D +N G ++D +LV ++ Q ++L + V+LT + + Sbjct: 171 GFPVPELEWERWRQDIAMNAYGVKVDTELVNGAIKIQEQCEEELLNEAVRLTQ--LENPN 228 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L ++ G L + + T++S L ++ + ++ R +++ K ++ Sbjct: 229 SPTQLLNWV-NAQGYPLENTQKATIESALKE-DLPLKVRRVLEIRQQLGKTSVKKYEAMT 286 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---- 352 + R+RG QFYGAS+TGR+SG + Q QNLPR E L +T + + R + Sbjct: 287 NTIGEGDRVRGISQFYGASKTGRFSGRLVQMQNLPRNYL--EPLAETRECVKRQDYETLK 344 Query: 353 --IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 S +R+ I S G + VVAD + IEARV+AW+A E W + FA IY Sbjct: 345 LLFDSIPDTLSQLIRTAFIPSTGNQFVVADFSAIEARVIAWLAKETWVQEVFATHGKIYE 404 Query: 411 TTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 T ++ F+ PI+K++K R GKV LALGYQGG +M Sbjct: 405 ATASQMFHVPIEKIAKGNPEYALRQKGKVATLALGYQGGTNALISMG------------- 451 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 A+K L + WRA +Q ++ LW + Sbjct: 452 ---------------------------ALKMGLSEEELPEIVTRWRAANQRIVALWSAVG 484 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-------KGDCS 578 V++G + + ++ R + I LPS R+L Y G+ Sbjct: 485 SYALRTVRDGRARQVNGLIFRMEQDLKHGLRFLTIELPSKRKLFYCKPYIGLNQFGGESL 544 Query: 579 YL---NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 Y N T + T+GGKL ENIVQ I+RD LCE + T GY IV VHDE++ + Sbjct: 545 YFYTQNQTTKKWEESSTFGGKLVENIVQGIARDCLCETLDRITSKGYRIVFHVHDEVIVD 604 Query: 636 TPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +V LC +M + WAKGL LK G+ + Y+K Sbjct: 605 AGMD--LTVEELCGIMAEPIPWAKGLILKGAGFSGQFYQK 642 >gi|238018841|ref|ZP_04599267.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] gi|237864607|gb|EEP65897.1| hypothetical protein VEIDISOL_00701 [Veillonella dispar ATCC 17748] Length = 644 Score = 630 bits (1624), Expect = e-178, Method: Composition-based stats. Identities = 218/696 (31%), Positives = 324/696 (46%), Gaps = 77/696 (11%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +L ID+ET S P+ K G Y + I L AY++DDEPV++ D T+ +P ++ Sbjct: 2 ELSIDVETYSDCPI-KYGAQRYVDDTTFEILLFAYSFDDEPVEVIDMTKD-PLPERVVDA 59 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L ++ + A N+ FE + KK D W CTSVLA LP+SL N AL E Sbjct: 60 LYNKEITKTAFNAAFEMLCLKKYFP-DADYTNWECTSVLALYCSLPASLDNVSKALRLGE 118 Query: 121 HLTKMEEGKALIARFC---KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K GK LI F K + +P + + W + EY ++DV R + KRL Sbjct: 119 --AKDARGKRLIQFFSVPRKPTKTNPKTRNMPEDAPEKWAEYIEYNRQDVVVERAIRKRL 176 Query: 178 IPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + L E + WLLDQ IN RG ++D++LV + ++ E LT + + Sbjct: 177 LSLKPPAIEHEYWLLDQDINWRGVKVDMELVDAALACNDEIVEEATESSKILTG--LENP 234 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 T L+ +L G DL M + + ++L+ +I + ++ NR S+I K + Sbjct: 235 NSTMQLKEWLTARLGYDLETMRKDDVSNLLAQ-DIPSDVRKVLQNRQVLGNSSIKKYLAM 293 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA- 354 AV SDGR+ G LQFYGA R+GRW+G V Q QNLPR + + + E + Sbjct: 294 KNAVCSDGRIHGMLQFYGAMRSGRWAGRVVQLQNLPRNYLEDLDTARDVLKSRDVEMLDL 353 Query: 355 ---DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +P + +R+ ++A +G + +VAD + IEARV+AW+A E W+ FA G DIY Sbjct: 354 LYGNPGDVIKQLIRTALVAEDGHRFIVADFSAIEARVIAWLAHEKWRQDVFAQGGDIYCA 413 Query: 412 TYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + + F+ P++K V+ R GKV ELALGY GG K M S + ++ Sbjct: 414 SASSMFHVPVEKHGVNGHLRQKGKVAELALGYGGGVGAMKAMDSKGEIPEKEL------- 466 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 + +AWR + + WKD Sbjct: 467 ----------------------------------PGIIEAWRQASPRITKFWKDADSAAK 492 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT----- 584 VV+ G + + + + K + I LPS RRL Y+ + + + + Sbjct: 493 QVVRTGEPVRIIQ----GNIKFFKSKGFLFIELPSGRRLAYARPRLGLNQFGSESIEYDG 548 Query: 585 -----SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDT 639 + R TYGGKL ENIVQA++RD L M +K GY IV +HDE+V E P Sbjct: 549 MDQVKNTWGRVETYGGKLVENIVQAVARDCLAASMLRLSKAGYKIVAHIHDEVVIEAPIG 608 Query: 640 PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 S+ + +M + W +GL L A G+E Y K Sbjct: 609 -VGSLEEVIDIMCEPEPWNEGLILNAAGFENPYYMK 643 >gi|225405823|ref|ZP_03761012.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] gi|225042637|gb|EEG52883.1| hypothetical protein CLOSTASPAR_05044 [Clostridium asparagiforme DSM 15981] Length = 668 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 197/709 (27%), Positives = 299/709 (42%), Gaps = 80/709 (11%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIETRS + K G + YA+ I L AY WDD PV++ D T + P ++ + Sbjct: 4 HHLSIDIETRSSVDISKAGAYRYAQSPDFEILLFAYQWDDGPVEVIDLTADESFPPEIWE 63 Query: 60 -YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 LRD V+ A+N+ FE + G P +W CT G + L A+ Sbjct: 64 EALRDPDVIKHAYNAAFEWYCLNRA-GYATPLDQWRCTMAHGLYCGYTAGLDATGKAIGL 122 Query: 119 SEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K+ GKALI FC K + + + H W LF EYC++DV E+ Sbjct: 123 PQDKQKLAVGKALIRYFCVPCKPTKSNGGRTWNQPRHDPDKWTLFKEYCRQDVVTEHEIL 182 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ + E LW LD +N G R+D L+ + +KL + V+LT + Sbjct: 183 RRLNFFPMPEDEERLWQLDVAMNAYGVRVDTKLIAGALYVDEVSTEKLTAEAVELTG--L 240 Query: 233 RSSRQTYALRMYLFLITGIDLVD------MSEGTLKSILSHSN-ITQLAKDLILNRLASS 285 + L ++ D + + T++ L + + + ++ R Sbjct: 241 DNPNSGAQLVPWINAHNKEHPDDPDLLADLRKETVEEALKDRDNLPEDVARMLEIRQQLG 300 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 +++ K + A R+RG Q+YGA+RTGRW+G + Q QNLPR + + Sbjct: 301 KTSVKKYVAMDVARGEGDRVRGLTQYYGANRTGRWAGRLVQLQNLPRNYLKTLDYARELV 360 Query: 346 ALNRGETIA----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 + + + S +R+ I S G K VVAD + IEAR +AW+AGE W + Sbjct: 361 KAKNYDGLRILYGNVPDTLSQLIRTAFIPSEGHKFVVADFSAIEARAIAWLAGEQWVNEV 420 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCG 456 FA IY T A+ F P+++++K R GKV LALGYQG M Sbjct: 421 FATHGKIYEATAAQMFGVPVERITKGNPEYSLRQKGKVATLALGYQGSTAALIAMG---- 476 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A+K L + WR ++ Sbjct: 477 ------------------------------------ALKMGLTEDELPDIVTRWRNANKR 500 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 + LW + V+Q + + + + + LPS R+L Y Sbjct: 501 ICGLWYAVENTALRVMQTAQPQGLNGLIFALEGDLIYGQSFLTVRLPSGRKLYYPKPFLQ 560 Query: 577 CSYL----------NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 + T + + TYGGK+TENIVQAI+RD L ++ + G V Sbjct: 561 ENRFGKQAIHYYAVGQQTRKWEIDSTYGGKMTENIVQAIARDCLAVTLRRIAQKGLQTVF 620 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ + P +V +C LM + WA GL LK G+E+ Y K Sbjct: 621 HVHDEVIIDAPMET--TVDEICDLMAEPIPWAPGLILKGAGFESSYYMK 667 >gi|288799805|ref|ZP_06405264.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] gi|288333053|gb|EFC71532.1| hypothetical protein HMPREF0669_00204 [Prevotella sp. oral taxon 299 str. F0039] Length = 726 Score = 626 bits (1614), Expect = e-177, Method: Composition-based stats. Identities = 206/698 (29%), Positives = 320/698 (45%), Gaps = 75/698 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + L IDIET S + GV Y + I L AY+ D V+L D + +P+ +L Sbjct: 80 IKILSIDIETYSDNEITN-GVHNYVDTPNFEILLFAYSCDGGSVQLVDLAQGEEIPAKIL 138 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D ++ A N+ FER+ K LG+ + +W CT + A GLP+SL++ L Sbjct: 139 DALTDSNIIKTAFNASFERVCIGKHLGLTLDPSQWHCTQIRALMLGLPASLQSCGEVLKL 198 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 K+ EG LI F CK + + H W F YC RDVE + + Sbjct: 199 KH--KKLREGAELIKYFSIPCKPTKSNGGRTRNLPEHAPDKWAQFKRYCIRDVEVEKAIQ 256 Query: 175 KR-----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ++ L P++ ER L++ DQT+ND+G ID +L + + + +L ++ ++T+ Sbjct: 257 RKVCNNTLNPVTPFERALYIFDQTMNDKGVCIDSELANNAIRMNDEAQDELFAEMQEITN 316 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L+ +L G + +++ K + + + ++ K ++ R SS +++ Sbjct: 317 --LENPNSPVQLKQWLSSKLGRPIQSLAKEDAKELATGA--SEDVKRVLYLRSMSSKTSV 372 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K ++ A SD +L LQFYGA +TGRW+G + Q NLPR + L + + N Sbjct: 373 KKYEAMTLAKCSDNKLHDLLQFYGA-KTGRWAGRIVQVHNLPRNSSKDLALARELVKKND 431 Query: 350 GETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 E + G + S +R+ IA L V D + IEARV+AW+AGE+W++K F Sbjct: 432 FELLELTFGNVCDILSQLIRTAFIAKENYTLCVCDFSAIEARVIAWLAGEEWRLKVFRGS 491 Query: 406 EDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 IY + A+ F ++ + R GK+ ELALGY+GGA K M + Sbjct: 492 GRIYEASAARMFGVDEKTITHDSPLRQKGKIAELALGYEGGANALKIMGADKMGLSD--- 548 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 PE A + WR +++LW+D Sbjct: 549 --------------------------PEIA-----------QIVSGWRNSSPNIVKLWRD 571 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYL 580 + + I ++ L+ R+ + I LPS R L Y K Y+ Sbjct: 572 VERAAKEAILSDRIIKLKQ----GGLIFRKTSNILQIKLPSGRLLSYPLAKIVDNKICYM 627 Query: 581 --NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP- 637 N T Q + TYGGKL ENIVQAI+RD L E + K GY+I VHDEI++E P Sbjct: 628 SQNQTTRQWVDTETYGGKLVENIVQAIARDCLGETILRVDKKGYNICFHVHDEIIAEVPT 687 Query: 638 DTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 D ++ + ++ ++A LPLK EGY Y K Sbjct: 688 DESAKALQDIKNIFATPITFAPDLPLKGEGYITPYYLK 725 >gi|312897720|ref|ZP_07757136.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310621104|gb|EFQ04648.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 654 Score = 624 bits (1610), Expect = e-176, Method: Composition-based stats. Identities = 200/699 (28%), Positives = 303/699 (43%), Gaps = 70/699 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L IDIET SP + GV+ Y+E I L +YA+ V + D +P D++ Sbjct: 1 MRHLNIDIETYSPNDIS-FGVYKYSESEEFEILLFSYAYAFGEVHVVDLASGETIPDDVV 59 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L+ + V+ A+N+ FE + G ++W CT + G P L AL Sbjct: 60 LDLKRDEVIKHAYNAQFEITCLNRA-GYQTFVEQWRCTMIHGAYLGYPMGLAKLGKALGL 118 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 ++ K + G ALI F CK + + H W + Y K+DV E + Sbjct: 119 TQDKMKDKAGAALIRYFSVPCKPTKKNGGRTRNLPKHDPDKWAAYIAYNKQDVVTEMECY 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +RL P+ + W +D +N G ID LV + + +K L E+ +LT + Sbjct: 179 RRLSAFPVPEEVEKQWQVDIRMNATGVGIDRQLVDGALTIDEENKKALLEEAYELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L +L T ++L +++ ++ + ++ ++ LAK ++ R + S++ K Sbjct: 237 SNPNSRNQLLDWLNSNTNLELEKLTKDSVAAAMTDAD--DLAKKVLTIRKKLAKSSVSKY 294 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA----LN 348 ++ A DGRLRGTLQFYGA+RTGRW+G + Q QNLPR + +++ + Sbjct: 295 EMMASATGQDGRLRGTLQFYGANRTGRWAGRLLQVQNLPRNYITNLDTARSLVKASNRVG 354 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G D S +R+ IIA G L VAD + IEARV+AW++GE W+ K FA G DI Sbjct: 355 LGLLFGDVSDTLSQLIRTAIIAKEGYTLCVADFSAIEARVIAWLSGETWRQKVFAEGGDI 414 Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 Y + + F P+ K V+ R GKV ELALGYQGG K M Sbjct: 415 YCASASSMFGVPVVKHGVNGHLRQKGKVAELALGYQGGVNALKAMG-------------- 460 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ L + WR +++ W + + Sbjct: 461 --------------------------ALDMGLTEEELPNIVGLWRQASPNIVKFWYTVEK 494 Query: 527 GFACVVQEGGSISA-RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV--------KGDC 577 V G ++ + + R + I LPS R+L Y D K Sbjct: 495 AAVYTVTTGNPMTLDHGITFRLEVDPFYGYRYMTIELPSGRKLFYPDPHIKLNNFDKEAV 554 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETP 637 + + + E TYGGKL ENI QA++RD L + + NG ++ +HDE V E P Sbjct: 555 HFKTQLNNAWVTESTYGGKLVENITQAVARDCLALTLMRLSGNGLPAIMHIHDEAVIEVP 614 Query: 638 DTPYFSVGTLCSL-MTKNPSWAKGLPLKAEGYEAKRYRK 675 + WA+GL L A G+ Y K Sbjct: 615 KDEADEYLDIVEKTFALPIPWAEGLALTAAGFTNDYYMK 653 >gi|268610175|ref|ZP_06143902.1| family A DNA-dependent DNA polymerase [Ruminococcus flavefaciens FD-1] Length = 654 Score = 622 bits (1603), Expect = e-176, Method: Composition-based stats. Identities = 215/710 (30%), Positives = 329/710 (46%), Gaps = 92/710 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S + + + GV+ YAE + L +Y+ D PV D +P ++L Sbjct: 1 MKQLTIDIETASDEDISECGVYRYAESEYFDLLLVSYSIDGGPVATVDIDSGDTLPDEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL--------------GIDIPSKRWICTSVLARTNG 104 L D++V+ A N FER+ L G I + W C + +R G Sbjct: 61 SALTDKSVIKKAFNVNFERVCLSVYLRRNYPEIAGFEDAVGNYIAPESWHCDMIHSRYLG 120 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC--TRANHVQAWQLFGEY 162 + SSL + L K++EGK LI FC D +++ + W+ F EY Sbjct: 121 MMSSLDDMGKLLR--LKEKKLDEGKDLIKYFCTLHQDKQGNLLFYDKSDAPKKWKEFIEY 178 Query: 163 CKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +RDVE ++ + L +P+ D + + +DQ INDRG +D K EL + +K+L Sbjct: 179 NRRDVEVELKIQRLLSEMPVPDFIWEEFYIDQRINDRGILVDTKFAEKAVELDSNVKKEL 238 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + +LT + + ++ +L + GI+ + + ++ +L+ + K++++ Sbjct: 239 FPKLKELT--RLDNPNSPAQMKDWL-MRQGIEADSLDKKSMPLLLASA--PDDVKEVLML 293 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S S++ K +T+ A DGR RG FYGA+RTGR++G + Q QNLP+ Sbjct: 294 YQQLSKSSVSKYHTMLGASCKDGRARGMFNFYGANRTGRFAGRIIQLQNLPQNHLDNLAE 353 Query: 341 TQTIQALNRG----ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 T+ + E D + S +R+ I GKK VVAD + IEARV++W+AGE Sbjct: 354 TKWLIKSGDLDAVKERFEDIPDVLSQLIRTAFIPPEGKKFVVADFSAIEARVISWLAGET 413 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 W+++AFANGEDIY AK F P++K V+ R GK+ ELA GY G K M Sbjct: 414 WRMEAFANGEDIYCACAAKMFGVPVEKNGVNGHLRQKGKIAELACGYGGSIGAIKAMGGT 473 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 E + D + + + + WR Sbjct: 474 ------------------------------------ELNLTDDELYS----LVEDWRKTS 493 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 +++LW D+ V+ + S++ RL + I LPS RRL Y K Sbjct: 494 PNIVKLWSDVQSVAVKVITDQSSMT------FGRLKFSYEIGILFIELPSGRRLAYVRPK 547 Query: 575 GD--------CSYLNTAT-SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIV 625 + +Y + +R TYG KL ENI Q I+RD+L M A DIV Sbjct: 548 VEKDDNGKTIITYEGVGDNKKWLRLETYGAKLVENITQGIARDLLLHSM--AAMKDMDIV 605 Query: 626 LTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ E P +V +C LM + P WA+GL L+A+GYE + Y K Sbjct: 606 GHVHDEVIVEC--DPDTTVVQVCHLMEQTPDWAEGLLLRADGYECEFYMK 653 >gi|282534222|gb|ADA82330.1| putative DNA polymerase [Escherichia phage K1H] Length = 726 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 255/729 (34%), Positives = 352/729 (48%), Gaps = 57/729 (7%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDEPV++WD T S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171 C L S K + GKALI RF K + + T H W LF +Y D+ A R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+F +L S+ E + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + LR L + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL + Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357 Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY T K F D + KE+ R IGK EL LGY GG F A + GLDL ++ Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMTK 477 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQY----PEFA--------VKDKLIGTACELVKKAWRA 512 + T W + W + Q P + DK + C+ +K+ WR Sbjct: 478 TMDGTFPDHIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWRE 537 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKR------DVHIVLPS 564 H + W+D+ + ++ G + R R V + + + LPS Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597 Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 R + Y +V+ N T Q + TY GKL EN QA+ Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL AE Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717 Query: 667 GYEAKRYRK 675 G E KRY K Sbjct: 718 GAEMKRYAK 726 >gi|282533171|gb|ADA82280.1| putative DNA polymerase [Escherichia phage K1G] Length = 726 Score = 620 bits (1598), Expect = e-175, Method: Composition-based stats. Identities = 255/729 (34%), Positives = 352/729 (48%), Gaps = 57/729 (7%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDEPV++WD T S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEPVQVWDCTNGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171 C L S K + GKALI RF K + + T H W LF +Y D+ A R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+F +L S+ E + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + LR L + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL + Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357 Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY T K F D + KE+ R IGK EL LGY GG F A + GLDL ++ Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAK 477 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQY----PEFA--------VKDKLIGTACELVKKAWRA 512 + T W + W + Q P + DK + C+ +K+ WR Sbjct: 478 TMDGTFPDYIWAATARGYEWARIQEAKRPPRPGENDDRPSYILDKKVWRTCDAIKRMWRE 537 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKR------DVHIVLPS 564 H + W+D+ + ++ G + R R V + + + LPS Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597 Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 R + Y +V+ N T Q + TY GKL EN QA+ Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL AE Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717 Query: 667 GYEAKRYRK 675 G E KRY K Sbjct: 718 GAEMKRYAK 726 >gi|282535272|gb|ADA82478.1| putative DNA polymerase [Escherichia phage K1ind3] gi|282547373|gb|ADA82429.1| putative DNA polymerase [Escherichia phage K1ind2] Length = 726 Score = 614 bits (1584), Expect = e-173, Method: Composition-based stats. Identities = 254/729 (34%), Positives = 352/729 (48%), Gaps = 57/729 (7%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 MS LF+D ET S L KVG +AYAE + +C YA+DDE V++WD T+ S MP DL Sbjct: 1 MSYLFLDFETFSEADLKKVGSYAYAEHPTTEVLICTYAFDDEHVQVWDCTDGSDMPGDLH 60 Query: 59 QYLR-----DETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + LR + + V HN S+F+R++ K G DIP I T + A + LP SL Sbjct: 61 RALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFDIPVSNTIDTMIWAFRHALPGSLDAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171 C L S K + GKALI RF K + + T H W LF +Y D+ A R Sbjct: 121 CEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRRYTAETHPDEWALFIKYAVSDITAMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+F +L S+ E + LDQ INDRG+++D+ L E + + + +L E+ + Sbjct: 181 EVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVALAEAAIEAVEKHKAQLQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + LR L + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDLLADDDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K N L SSD R RG +Q+ GA RT R++G FQPQNL R ++ L + I AL + Sbjct: 298 TKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKGFQPQNLARGYYHDDELDKGISALLK 357 Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGHKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 IY T K F D + KE+ R IGK EL LGY GG F A + GLDL ++ Sbjct: 418 IYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGLGYAGGVGAFVQFAKNLGLDLVDMAK 477 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQY----PEFA--------VKDKLIGTACELVKKAWRA 512 + T W + W + Q P + DK + C+ +K+ WR Sbjct: 478 TMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWRTCDAIKRMWRE 537 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGS--ISARRVANVPRLVMRRHKR------DVHIVLPS 564 H + W+D+ + ++ G + R R V + + + LPS Sbjct: 538 SHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVKFSRNVETDNNGNKVAGWWLRMTLPS 597 Query: 565 SRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 R + Y +V+ N T Q + TY GKL EN QA+ Sbjct: 598 GRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGENQLTRQWGFQYTYSGKLVENCTQALC 657 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RD+L + N NGY IVL VHDEI+ ETPD P ++V L LM + P WA+G PL AE Sbjct: 658 RDLLANALLNVEANGYPIVLHVHDEIICETPDLPEYNVAELERLMCELPEWAEGFPLVAE 717 Query: 667 GYEAKRYRK 675 G E KRY K Sbjct: 718 GAEMKRYAK 726 >gi|71901491|ref|ZP_00683578.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728747|gb|EAO30891.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 712 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 253/711 (35%), Positives = 353/711 (49%), Gaps = 61/711 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET SP P+ GV AYAEQA + L AYA D PV++WD T + MP +L L + Sbjct: 11 LWGDLETYSPVPIA-HGVHAYAEQAQLLLFAYALGDGPVQVWDCTATATMPEELSAALHN 69 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V+ HNS F+R + + GI+IP +RW + A + LP +L C L Sbjct: 70 PAVLLYFHNSHFDRTVLRHC-GINIPLERWRDSMAQALAHALPGALGTLCELLRVPVEQA 128 Query: 124 KMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--L 180 K ++GK L+A FCK TR H W F +Y +RDV A R++ KRL Sbjct: 129 KAKDGKRLVALFCKPRPTHCTLRRATRDTHPTEWAQFVDYARRDVTAMRDVVKRLPSHNY 188 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E LW LDQTINDRG +D DL + + ++ L E LT G+++++ Q A Sbjct: 189 TGAELALWFLDQTINDRGVLVDTDLAQAAIGAVERAKQALAERTSDLTAGVVQAATQRDA 248 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 L +L G+ L DM + T++ L + + ++L+ R +S ++ K L S Sbjct: 249 LLHHLSTEHGVVLPDMQQHTVERCLDDPLLPETVRELLSIRRQASTTSTAKYQALLNCTS 308 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE---TIADPL 357 DGRLRGTLQF GASRTGRW+G +FQP NLPR S+ ++ I A+ G D + Sbjct: 309 RDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVM 368 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF--------------- 402 L S +RSC+IA KKLVVADL+ IE RVLAW+AGE K++AF Sbjct: 369 ALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAWLAGETPKLQAFGDFDTCQGVDGTWHS 428 Query: 403 -------------------------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 G+DIY YA +F V+KEQR IGKV EL Sbjct: 429 GEAITHGALRGAPIALQWNAEHAPIRKGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQEL 488 Query: 438 ALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 ALGY GG F A+ +DL+ ++ + + E+ + P F + D+ Sbjct: 489 ALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPPLLLQQAVEALQWTKANHRPTFGLSDR 547 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 AC++ K+AWR H + W+ L + + + ++ + Sbjct: 548 -AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPETAHT-----CCGITVQYSRAW 601 Query: 558 VHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILC 611 + + LPS R L Y+ + G SY+ T T + R TYGGKL ENI QA+SRD+L Sbjct: 602 LRMRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLA 661 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLP 662 M GY IVLTVHDEI++E D F+ L +LM P +G P Sbjct: 662 ACMPAIEAAGYAIVLTVHDEIITEADDNAAFNAAHLAALMATPPPGHRGCP 712 >gi|318064432|gb|ADV36447.1| DNA polymerase I [Edwardsiella phage eiAU] gi|318064540|gb|ADV36499.1| DNA polymerase I [Edwardsiella phage eiDWF] gi|318064644|gb|ADV36551.1| DNA polymerase I [Edwardsiella phage eiMSLS] Length = 735 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 264/734 (35%), Positives = 360/734 (49%), Gaps = 65/734 (8%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTE----------QS 51 LF+D ET S L KVG +AYAE I L +YA+DD P K+WD T + Sbjct: 5 LFLDFETFSEADLKKVGAYAYAEHDSTEILLASYAFDDGPAKVWDATCASGESDIDLDNN 64 Query: 52 AMPSDLLQYLRDET---VMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 + P DLL+ LR V V HN +F+R++ ++ LG+DIP + T V A + LP Sbjct: 65 SAPDDLLRGLRRAKRGRVKLVMHNGLMFDRLIIRECLGLDIPPEHIHDTMVQAFRHALPG 124 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRD 166 SL C LN L K + GKALI RFCK + + R H W+ F Y + D Sbjct: 125 SLDKLCEVLNVDADLAKDKAGKALIKRFCKPTPKNYKIRRYDRNTHPDEWKQFKHYARND 184 Query: 167 VEATRELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + A RE++ ++ D E ++ LDQ INDRG+ +D DL +A R +L E Sbjct: 185 ITAMREIYYKMPSWGEIDKENEILALDQRINDRGFYVDTDLAKAATAAVAAARAELQEAA 244 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 G + + LR L + + + TL +L +++ A+ +I RL + Sbjct: 245 QATYGGGLTGADFLPLLRD---LAPAHHIPNAQKSTLGDLLDDADLPDEARQVIEMRLGA 301 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + +A K L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E+ L + I Sbjct: 302 ASTASTKYAPLLNGMSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYFKEKPLARGI 361 Query: 345 QALNRG--ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +AL RG E D + LA+ VR CII + GKKLVVAD + +E R LAW+AGED + F Sbjct: 362 EALKRGTAEYAFDVMKLAASTVRGCIIPAPGKKLVVADYSNVEGRGLAWLAGEDSALDTF 421 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY T K F D V +R IGK EL LGY GG F T + + GLDL++ Sbjct: 422 RAGLDIYKVTAGKMFGISPDDVDGYRRQIGKACELGLGYGGGVAAFLTFSKNLGLDLEEM 481 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQ------------YPEFAVKDKLIGTACELVKKAW 510 + + T W A + +M+ Q V K C+ +K+ W Sbjct: 482 AVTMAGTFPDYHWRAALRAYEFMKLQEVKRKPLPGKKDDRTTVVLSKKAWLTCDCIKRMW 541 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISA---------RRVANVPRLVMRRHK--RDVH 559 R H +Q W DL E + G+ +R + R + R K + Sbjct: 542 RESHPRTVQFWYDLEEACLMAIDNPGASYWAGAKVRQDGKRAIRIERTLTRSGKPGNWLK 601 Query: 560 IVLPSSRRLVYS------------------DVKGDCSYLNTATSQLMRERTYGGKLTENI 601 I LPS R L Y + N T Q + TYGGKL EN+ Sbjct: 602 IELPSGRILSYPGIGVSMEKTNEDDPGEKARPRIKYRGENQLTRQWGWQHTYGGKLAENV 661 Query: 602 VQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL 661 QA+ RDIL M GY+I+L+VHDE+++ETPDT ++V L LM P+WAKG Sbjct: 662 TQALCRDILAWCMLPVDNAGYEIILSVHDELITETPDTAEYNVAELERLMCDLPAWAKGF 721 Query: 662 PLKAEGYEAKRYRK 675 PLKAEG+E RY+K Sbjct: 722 PLKAEGWEGYRYKK 735 >gi|296277208|ref|ZP_06859715.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] Length = 631 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 196/685 (28%), Positives = 298/685 (43%), Gaps = 85/685 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + + L +L G+D+ ++ + T++ L + T AK ++ RL S + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEA--TGKAKKMLEIRLQMSKT 294 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ L + Sbjct: 295 SVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDTELEIARDLI 353 Query: 348 NRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 P L S VR+ A G +L V+D + IEARV+AW A E W++ Sbjct: 354 KEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAWYAKEQWRLD 413 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 F IY + ++ FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 414 VFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG------ 467 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 A++ + + + +WR + ++ Sbjct: 468 ----------------------------------ALEMGIEENELQGLVDSWRNANPNIV 493 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDC 577 WK E ++ +R+ + L K + I LPS R L Y G+ Sbjct: 494 NFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKALVGEN 547 Query: 578 SYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 S+ + + + +TYGGKL ENIVQA +RD+L + G+ IV VH Sbjct: 548 SWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEALGFKIVGHVH 607 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKN 654 DE++ E P + + ++M K Sbjct: 608 DEVIVEIPRGSNG-LKEIETIMNKP 631 >gi|306826828|ref|ZP_07460129.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] gi|304430991|gb|EFM33999.1| DNA-directed DNA polymerase [Streptococcus pyogenes ATCC 10782] Length = 643 Score = 602 bits (1552), Expect = e-170, Method: Composition-based stats. Identities = 201/701 (28%), Positives = 308/701 (43%), Gaps = 85/701 (12%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + +D+ET S + K GV+ YA E I +Y+ + V L D T++ P L Sbjct: 1 MR-IDLDLETYSSNDI-KNGVYKYADAEDFDILFMSYSINFGDVVLVDLTKEE-FPEFLK 57 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGI------DIPSKRWICTSVLARTNGLPSSLKNA 112 ++ + A N++FERI K W V A+ GLP+SL+ Sbjct: 58 NHILNADATFWAWNTVFERICLSMYFQKKGWSKGYFDPKNWKDIMVHAQELGLPASLERC 117 Query: 113 CLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVE 168 L E K GKALI F CK + + H + W+ +GEY +DV Sbjct: 118 ASYLGLEEQ--KDTRGKALIRYFSIPCKPTKANGGRTRNLPEHDPEKWEEYGEYNVQDVV 175 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + ++L +P+ D E D + DQ INDRG +D +LV + + L ++ Sbjct: 176 TQMAIAEKLESVPVHDREWDHYACDQRINDRGVALDKELVASALYCKDVKMESLSGELKA 235 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 +T + + L +L G +++ ++ L + K ++ +L ++ Sbjct: 236 ITG--LANPNSRAQLLPWL-KEHGYSANGLTKADVEQELKTAEGE--LKRVLELKLQTAM 290 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 S++ K + A+ SDGR+ G LQFYGASRTGRW+G V Q QNL R + + Sbjct: 291 SSLKKYEAMERAMCSDGRVHGLLQFYGASRTGRWAGRVVQVQNLARNYIKDLDDARGYVK 350 Query: 347 LNRGETIADPLGLASD----CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + + +D VR+ ++A +G V+D + IEARV+AW AGE W++ F Sbjct: 351 KRDIDAVEILYDSLNDTLKQLVRTALVAKDGCTFYVSDFSAIEARVIAWFAGEQWRLDVF 410 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 + IY + ++ F PI+++ KE R GK+ ELALGYQGG K M Sbjct: 411 STHGKIYEASASQMFGIPIEEIDKELRQKGKISELALGYQGGPGALKQMG---------- 460 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ + + + WR ++ ++Q WK Sbjct: 461 ------------------------------ALNMGVKEEELQGLVDDWRRANKKIVQFWK 490 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------ 576 D+ ++ I + +L R K + I LPS R L Y+ K + Sbjct: 491 DVQRAAIKAIKSRAPI------KLGKLRFRYRKGFLFITLPSGRNLAYARAKVEPGDYGD 544 Query: 577 -CSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVS 634 Y + TYGGKL ENIVQA +RDIL E + G+ +V VHDE + Sbjct: 545 KIIYEGQGDKAYFTAQETYGGKLVENIVQATARDILAEALLRIEAAGHGVVFHVHDEAII 604 Query: 635 ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E ++ + LM + P WA+GLPL +EGY K Y K Sbjct: 605 E---GSGLTIEEVNDLMAQAPDWAEGLPLNSEGYVTKYYMK 642 >gi|225220079|ref|YP_002720046.1| DNA polymerase I [Enterobacteria phage SSL-2009a] gi|224986020|gb|ACN74584.1| DNA polymerase I [Enterobacteria phage SSL-2009a] Length = 763 Score = 589 bits (1519), Expect = e-166, Method: Composition-based stats. Identities = 253/763 (33%), Positives = 355/763 (46%), Gaps = 91/763 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +LF+D ET S L KVG +AYAE I +C YA D+ V+ WD TE MP +L Sbjct: 4 FERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPTMPRELR 63 Query: 59 QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + LR + + +A+ LF+R++ ++ GID+P + T ++A + LP SL C Sbjct: 64 KALRRVSRKKAKIVMANGLLFDRLVIREKWGIDLPVCQIEDTMIMAFRHALPGSLDMQCQ 123 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATREL 173 L K + GKALI RFCK + + TR H + W F Y D+ A RE+ Sbjct: 124 VLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREV 183 Query: 174 FKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + R+ + E ++ L+DQ INDRG+ +D+DL + + +++L E+ + G Sbjct: 184 YWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLARAAIKAVQAHKEELKEEAWERFGGK 243 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + ALR L + + + TL +L + K LI RL +S +A K Sbjct: 244 LTGNDFLPALRD---LAPAFTIHNAQKSTLNDLLEDPDFPDEGKVLIEMRLGASSTASTK 300 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI------------ 339 N L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E S++ Sbjct: 301 YNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESD 360 Query: 340 ---------LTQTIQALNRGET--IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 LT I +L RG D L + VR CII + GKK VVAD + +E R Sbjct: 361 VAFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRG 420 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---KEQRAIGKVMELALGYQGGA 445 LAWIAGE + F G DIY T K F + + K+ R IGK EL LGY GG Sbjct: 421 LAWIAGEKTALMVFKAGRDIYCETAGKMFGLDPEYIKANRKDLRQIGKACELGLGYGGGV 480 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ----DQYPEFAVKD----- 496 F A + GLDL ++ +K T W A+ + + + + P+ KD Sbjct: 481 AAFLQFAKNLGLDLYAMAEVMKGTFPDHIWAAAKRGYEYARINEAKRPPKPGKKDERPTY 540 Query: 497 ---KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR------------ 541 K + C+ +K+ WR H + W +L + C ++ G Sbjct: 541 ILPKNVWLTCDAIKRMWRESHPKTVAFWAELEDAVLCAIRNPGKAYWAGANVRPDGKKAL 600 Query: 542 ---RVANVPRLVMRRHKR-------DVHIVLPSSRRLVYSDV------------------ 573 R + + I LPS R + Y + Sbjct: 601 KIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTEIDEDTGKKRTS 660 Query: 574 -KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 + N T Q + TYGGKLTENIVQA+ RDIL M GY+IVL+VHDE+ Sbjct: 661 TRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAGYEIVLSVHDEL 720 Query: 633 VSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++E PDT ++ LC+LM P WAKG PL AEG RYRK Sbjct: 721 ITEVPDTDDYTTEELCALMCDLPVWAKGFPLAAEGDIMYRYRK 763 >gi|9633592|ref|NP_051006.1| P45 [Acyrthosiphon pisum bacteriophage APSE-1] gi|9910664|sp|Q9T1Q3|DPOL_BPAPS RecName: Full=Probable DNA polymerase; AltName: Full=P45 gi|6118040|gb|AAF03988.1|AF157835_45 P45 [Endosymbiont phage APSE-1] Length = 993 Score = 582 bits (1501), Expect = e-164, Method: Composition-based stats. Identities = 230/610 (37%), Positives = 329/610 (53%), Gaps = 24/610 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL YL D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYLDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVHETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A + + + + +K+ T C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNT--ATSQ 586 +Q G R +L +RR K + I LPS R L Y + G +Y+ T + + Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKSWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597 Query: 587 LMRERTYGGK 596 R +TYGGK Sbjct: 598 WERLKTYGGK 607 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI QA +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 975 AWDLPLSANGFETYRYRK 992 >gi|212499741|ref|YP_002308549.1| DNA polymerase [Bacteriophage APSE-2] gi|238898732|ref|YP_002924413.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|211731710|gb|ACJ10198.1| DNA polymerase [Bacteriophage APSE-2] gi|229466491|gb|ACQ68265.1| APSE-2 prophage; DNA polymerase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 993 Score = 580 bits (1494), Expect = e-163, Method: Composition-based stats. Identities = 229/610 (37%), Positives = 329/610 (53%), Gaps = 24/610 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL Y D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A S + + + + +K+ C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREATSWYQKSVETDKTYGLSEKIF-VNCDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNT--ATSQ 586 +Q G R +L +RR K + I LPS R L Y + G +Y+ T + + Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARIENGQITYMGTNPYSRK 597 Query: 587 LMRERTYGGK 596 R +TYGGK Sbjct: 598 WERLKTYGGK 607 Score = 123 bits (309), Expect = 8e-26, Method: Composition-based stats. Identities = 44/78 (56%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI QA +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 915 CENICQAAARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 974 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 975 AWDLPLSANGFETYRYRK 992 >gi|160898852|ref|YP_001564434.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] gi|160364436|gb|ABX36049.1| DNA-directed DNA polymerase [Delftia acidovorans SPH-1] Length = 704 Score = 576 bits (1485), Expect = e-162, Method: Composition-based stats. Identities = 237/702 (33%), Positives = 347/702 (49%), Gaps = 33/702 (4%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L++D ET S + L +VG YAE A L AYA D P ++WD T + M +L + D Sbjct: 5 LWLDRETWSERDLKEVGTARYAEVAEDLLFAYAIGDGPARVWDCTAEE-MHDELYHAMDD 63 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLARTNGLPSSLKNACLALNFSE 120 AHN+ F+R + +P +RW C+ +A ++ LP L + C L Sbjct: 64 ADSEAWAHNAFFDRTIHNGPAQAHLPRIADERWRCSMAMALSHALPGGLADLCRVLKVPA 123 Query: 121 HLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + K+ +GK L+ F + D+ TR H W+ F +Y D+ A RE +R+ Sbjct: 124 DMAKLADGKKLVRLFTQPQPDNRKVRRATRLTHPAEWERFKQYAANDITAMRECVRRMPA 183 Query: 180 LSDGERDL--WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + + W LDQ IN RG+++D L +E+ ++ +L+ G Q Sbjct: 184 WNWDASAIAEWHLDQRINQRGFQVDQALTRAGARAAVEEKARIATRFAQLSGGQFT-PGQ 242 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 R+YL G +L + GT + +L + +++I +AS+ ++ K L Sbjct: 243 REKFRVYLGQRLGYELDNTQAGTFQVMLRDPGLPADVREMIELAIASNKTSTAKYAALDP 302 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER-SEEILTQTIQALNRG---ETI 353 AVS DGR RG LQF GASRT RW+G +FQPQNLP + S E++ I+ L G Sbjct: 303 AVSPDGRFRGGLQFAGASRTRRWAGRLFQPQNLPSRGLPSAEVIEDYIEHLKMGTHALFF 362 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDI 408 + + L + +R C++A+ GKKLVVADL+ IE RVLAWIA E+WK+KAF G D+ Sbjct: 363 DNLMLLGAAALRGCVVAAPGKKLVVADLSNIEGRVLAWIAREEWKLKAFREYDAGTGPDL 422 Query: 409 YVTTY-AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 Y T + P + K + A GKV +LA GYQGG ++T A GL + F ++ Sbjct: 423 YNITAVSIIGGDPWNVEKKNRNAFGKVPDLASGYQGGVAGYQTFARSYGLKMADFWDTIQ 482 Query: 468 STSTFEDWEQA-ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + +A E+ W Q + D++ A E K AWRA+H + W L Sbjct: 483 QMVPAQHVAKAWENLASWGHPQLESLEI-DEIEWVASETCKLAWRARHPATSKFWYALGG 541 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK------------ 574 ++ GS+ R V R ++ + + LPS R L Y + Sbjct: 542 AAKDAIRNPGSVFTAGPFIKLRTVSHRGQKWLVVRLPSGRFLTYFEPHIVGQGRDETIAY 601 Query: 575 -GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 G+ S T Q +R T+GGK+T N Q I+RDIL M A GY VL+VHDE + Sbjct: 602 WGEASEEGKTTRQWVRVFTHGGKMTGNCCQTIARDILAPSMAVAENRGYLPVLSVHDEAL 661 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +E PDT F+ L ++ NP+WA LPL A G+EA RY+K Sbjct: 662 TEVPDTDDFTAAGLVEILATNPAWAPDLPLAAAGFEAYRYKK 703 >gi|255994008|ref|ZP_05427143.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] gi|255993676|gb|EEU03765.1| prophage LambdaSa04, DNA polymerase [Eubacterium saphenum ATCC 49989] Length = 666 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 213/711 (29%), Positives = 315/711 (44%), Gaps = 86/711 (12%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSD--- 56 KL+IDIET S + G++ YAE + L AYA DD V+L D T+ + Sbjct: 4 HKLYIDIETFSSVDIRTAGLYKYAESGDFEVLLLAYAIDDGDVELIDLTDGGEITQQKLV 63 Query: 57 -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 + + L + + AHN+ FE K+ L I I RW CT V G P+SL+ A Sbjct: 64 GVRRLLESQNYIKCAHNAHFEMECLKRALHIIIRPSRWECTMVKGMYRGYPASLEKMGEA 123 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEATR 171 L+ E K+ GKALI FCK + + + W+LF EYCKRDVE R Sbjct: 124 LDMPEDKAKLRTGKALINYFCKPCKPTKTNGGRTRNLPKHASEKWELFREYCKRDVEVAR 183 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+ K L + G W+ D +N RG +D LV + + + + I ++T Sbjct: 184 EIDKMLPDVPQGVHTEWMRDYLVNWRGIAVDEALVEAAIAIDGEVKSAHLDTIKRITG-- 241 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + R + +L ++ ++ ++K++L S++T A+ ++ ++ K Sbjct: 242 VDNPRSRAQVLDWLNDTLDEEITSLNAASVKALLE-SDLTDDARAVLTAWQGLGKTSTKK 300 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 TL A D R+RG LQFYGASRTGRW+G + QP NLPR + + + Sbjct: 301 YETLRAAAQKDNRVRGLLQFYGASRTGRWAGRLVQPHNLPRGDVYNLNQAGELVKAGHKK 360 Query: 352 TI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 I S +R+C + G K V+ D + IEARVLAW+AGE W ++ F Sbjct: 361 DIELLHGSVPNTLSGLIRTCFVPREGCKFVICDYSAIEARVLAWLAGEHWVLEEFKGDGK 420 Query: 408 IYVTTYAKAFNTPIDKVSKEQ-----RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 IY T A+ +N + K R GK+ LALGYQG + M Sbjct: 421 IYEATAARMYNIDKSTIIKGHSNYAYRQKGKIATLALGYQGAVGALRQMG---------- 470 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A +D+ + +AWR + + +LW+ Sbjct: 471 ------------------------------ASEDEFTDDELRGLVRAWRVANPCIAELWR 500 Query: 523 --------DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV- 573 +++ F IS + N + ++ I LPS R L Y + Sbjct: 501 YTEMMAKSTVSDEFYSGTNPMIPISFKSTLNAVNGI------NLAIGLPSGRELYYHNPV 554 Query: 574 --KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625 G Y + + +E+TYGGKL ENIVQAI+RD+L + + TK IV Sbjct: 555 IVDGAIYYTDYTHAGKTKEQTYGGKLVENIVQAIARDVLADAINRITKTLVVGGINAHIV 614 Query: 626 LTVHDEIVSETPDTPYFSVGTLCS-LMTKNPSWAKGLPLKAEGYEAKRYRK 675 L VHDE+V E V L + + PSWA+GLPLK E + + Y+K Sbjct: 615 LHVHDEVVVEAEAGCAEKVQELLEGVFSTPPSWAEGLPLKGESFISDYYKK 665 >gi|282547321|gb|ADA82378.1| putative DNA polymerase [Escherichia phage K1ind1] Length = 698 Score = 567 bits (1461), Expect = e-159, Method: Composition-based stats. Identities = 239/694 (34%), Positives = 331/694 (47%), Gaps = 55/694 (7%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLR-----DETVMCVAHN-SLFERILFKKTLGID 87 AYA+DDEPV++WD T S MP DL + LR + + V HN S+F+R++ K G D Sbjct: 8 AYAFDDEPVQVWDCTNGSDMPGDLHRALRRLVKPNSRIKMVWHNGSMFDRLIMKHCWGFD 67 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 IP I T + A + LP SL C L S K + GKALI RF K + + Sbjct: 68 IPVSNTIDTMIWAFRHALPGSLDALCEVLGVSADNAKDKRGKALIQRFSKPTPKNYKIRR 127 Query: 148 -TRANHVQAWQLFGEYCKRDVEATRELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLD 204 T H W LF +Y D+ A RE+F +L S+ E + LDQ INDRG+++D+ Sbjct: 128 YTAETHPDEWALFIKYAVSDITAMREVFHKLPRWGNSEFEDRVLELDQLINDRGFKVDVA 187 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 L E + + + +L E+ + G + LR L + + + TL + Sbjct: 188 LAEAAIEAVEKHKAQLQEEAQRKYGGSLTGKDFLPILRE---LAPAHRIHNAQKSTLNDL 244 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L+ ++ A +I RL ++ +A K N L SSD R RG +Q+ GA RT R++G Sbjct: 245 LADDDLPDDASAIIEMRLGAASTASTKYNPLLLGRSSDDRRRGCIQYGGAKRTLRFAGKG 304 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIA--DPLGLASDCVRSCIIASNGKKLVVADLA 382 FQPQNL R ++ L + I AL +G D L + VRSCII G K VVAD + Sbjct: 305 FQPQNLARGYYHDDELDKGISALLKGRAHRRFDVAKLTASTVRSCIIPETGHKFVVADYS 364 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ---RAIGKVMELAL 439 +E R LAW+AGE+ + F G DIY T K F D + KE+ R IGK EL L Sbjct: 365 NVEGRGLAWLAGEETALDTFRAGLDIYCVTAGKMFGMEPDYIKKERKDLRQIGKACELGL 424 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY----PEFA-- 493 GY GG F A + GLDL ++ + T W + W + Q P Sbjct: 425 GYAGGVGAFVQFAKNLGLDLVDMAKTMDGTFPDHIWAATARGYEWARIQEAKRPPRPGEK 484 Query: 494 ------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS--ISARRVAN 545 + DK + C+ +K+ WR H + W+D+ + ++ G + R Sbjct: 485 DDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDIEDAAMAAIRNPGKEFTAGPRGVK 544 Query: 546 VPRLVMRRHKR------DVHIVLPSSRRLVYS------------------DVKGDCSYLN 581 R V + + + LPS R + Y +V+ N Sbjct: 545 FSRNVETDNNGNKVAGWWLRMTLPSGRVMSYPGVGLSVSKETDEDGKVSTNVRIKYQGEN 604 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 T Q + TY GKL EN QA+ RD+L + N NGY IVL VHDEI+ ETPD P Sbjct: 605 QLTRQWGFQYTYSGKLVENCTQALCRDLLANALLNVEANGYPIVLHVHDEIICETPDLPE 664 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++V L LM + P WA+G PL AEG E KRY K Sbjct: 665 YNVAELERLMCELPEWAEGFPLVAEGAEMKRYAK 698 >gi|309702940|emb|CBJ02271.1| putative phage DNA polymerase [Escherichia coli ETEC H10407] Length = 598 Score = 567 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 223/588 (37%), Positives = 322/588 (54%), Gaps = 22/588 (3%) Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEY 162 G +L C L + K +EGKALI FCK +S T H + W+ F Y Sbjct: 16 GSGGALGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAY 75 Query: 163 CKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 D+EA RE++KRL + E LW DQ INDRG +D++L + + QE+K+L Sbjct: 76 AGLDIEAMREVYKRLPKWNYQGTELALWHRDQQINDRGVCMDVELARAAIDAVDQEQKRL 135 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + ++TDG ++++ Q AL ++ G++L DM TL+ ++ ++ K+L+ Sbjct: 136 AKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAI 195 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 RL +S ++ K L + VS DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + Sbjct: 196 RLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQI 255 Query: 341 TQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 + I+AL G + + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+W Sbjct: 256 DEGIEALKAGCADLLFDNIMELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEW 315 Query: 398 KIKAFAN-----GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 K+ AF G D+Y YAKAF+ D V K R IGKVMEL LGY GG F T A Sbjct: 316 KLNAFREYDAGTGPDLYKLAYAKAFDIAPDDVDKHMRQIGKVMELGLGYGGGVSAFITFA 375 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 GLDL + + +A+S + + + + +++ AC+ +K+ WR Sbjct: 376 LVYGLDLDGLANAALPNIPRDVIREAKSWYDESVKRKSTYGLSERVF-IACDSLKRLWRR 434 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 H W +L + + ++ L +RR + I LPS R + Y Sbjct: 435 AHPATCDFWYELECTVRTAI-----ATPQKTLYCGYLKIRRDGAWLRIQLPSGRAVCYPS 489 Query: 573 V---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 +G+ +Y+ N+ + + R +TYGGKL EN+ QA +RD+L M GY IVLT Sbjct: 490 PVIEQGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIEDAGYSIVLT 549 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE+++E+PDT F+ L +L++ NP WA +PL A G+EA YRK Sbjct: 550 VHDEVITESPDTEDFNDKALSALLSTNPEWAPDIPLNAGGFEAYHYRK 597 >gi|48697222|ref|YP_024952.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] gi|47779028|gb|AAT38391.1| putative DNA polymerase protein [Burkholderia phage BcepC6B] Length = 681 Score = 563 bits (1452), Expect = e-158, Method: Composition-based stats. Identities = 224/686 (32%), Positives = 338/686 (49%), Gaps = 47/686 (6%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG---ID 87 + +A DD PV WD T + MP +L + + + +F+R++ K Sbjct: 1 MIWTWAIDDGPVGTWDVTTGAPMPVELDEAIDAADEYWWQNGGMFDRVVLKHAAPEIYAR 60 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYD 146 +P +W T V A +GLP L C N K +EG LI FCK +S Sbjct: 61 MPEHKWRDTMVQAYAHGLPGKLALLCEIFNIPTDQAKDKEGAQLIQLFCKPRPANSGLRR 120 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLI----PLSDGERDLWLLDQTINDRGYRID 202 TR H + W F Y D+ A R + K + P + E LW DQ IN RG ++D Sbjct: 121 ATRETHPEQWAKFLTYAGADITAERAVHKAMPRWNYPNNVTELALWHQDQRINMRGMQMD 180 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 ++L I + +K+L V+LTDG + + Q L +L +DL DM + TL+ Sbjct: 181 VELAEAAVRAIDRAQKELAARTVELTDGEVAKATQRDKLLAHLLAEYEVDLPDMKKSTLE 240 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 ++ ++ ++L+ RL ++ ++ K TL VS+DGRLRG +QF GA RTGR + Sbjct: 241 RRINDPDLPDALRELLAIRLEATMTSSSKYKTLLRGVSADGRLRGLMQFCGAQRTGRVAH 300 Query: 323 CVFQPQNLPRQ----------------ERSEEILTQTIQALNRGET---IADPLGLASDC 363 +FQP N+PR +E I AL G + +GL ++ Sbjct: 301 RLFQPGNMPRPDVGLMVGELGVAKFSDGDAERYTELGIGALKTGCADLVFENVIGLTANV 360 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFN 418 VR I+A +GK+L V+DL+ IE R AW+AGE WK++AF + G D+Y YA+AF Sbjct: 361 VRGTIVAPDGKRLYVSDLSNIEGRDAAWLAGEKWKLQAFRDFDAGIGADLYKLAYARAFG 420 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS---TSTFEDW 475 ++ V K R +GKVMELAL Y+GG F T +DL V + T E Sbjct: 421 VAVEAVDKYMRQLGKVMELALAYEGGVGAFVTFTMTYKMDLDSIRAAVFAALDTVDPEIV 480 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A W + + + AC+++K+ WR H W +L + + Sbjct: 481 REARGMWEWAVKKRRTLGLPQDVF-IACDILKRLWRRAHPQTSSYWPELRDAAILAISSP 539 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYL--NTATSQLMR 589 G + + R+++RR + + LPS R+L Y + G+ SY+ N T + R Sbjct: 540 G-----KTVHARRVILRRDGEWLRVQLPSKRQLCYLAPRVSDDGEISYMGVNQYTRKWQR 594 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +TYGGK+ EN+ QA++RD+L GYDIVL++HDE+++E PD +S L S Sbjct: 595 TKTYGGKIFENLCQAVARDVLFYNAPAVEAAGYDIVLSIHDELITEAPDADDYSADELSS 654 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 L+ P+WA+G+PL A G+ A RY+K Sbjct: 655 LIATAPAWAEGMPLAAAGFSAYRYKK 680 >gi|75906029|gb|ABA29378.1| DNA polymerase [Bacteriophage APSE-2] Length = 579 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 221/582 (37%), Positives = 316/582 (54%), Gaps = 19/582 (3%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ PVK+WD T+ MP+DL Y D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHAPVKVWDVTQDKTMPADLKAYFDD 63 Query: 64 ETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K+ L ID+P R T V A +GLP +L C N + Sbjct: 64 SEILTVWHNGGMFDTVILKRVLNIDLPLSRVHDTLVQALAHGLPGALGLLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 K +EGKALI+ CK +S T H + WQ F +Y D+ A RE+++ L Sbjct: 124 AKDKEGKALISLLCKPRPKNSKIQRATALTHAEEWQRFKDYAGSDILAMREIYQHLPNWN 183 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q Sbjct: 184 MNVDETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++V Sbjct: 244 ALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADP 356 S+DGRLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D Sbjct: 304 SADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y Sbjct: 364 MQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 424 AYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 +A S + ++ + + +K+ T C+ +K+ WR H + W D+ + Sbjct: 484 PGVKREATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQA 542 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 +Q G R +L +RR K + I LPS R L Y Sbjct: 543 IQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSA 579 >gi|297242717|ref|ZP_06926655.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888928|gb|EFH27662.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 560 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 182/618 (29%), Positives = 277/618 (44%), Gaps = 90/618 (14%) Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+ + W CT + + T GLP SL++ L + K+ EGK LI FC P Sbjct: 5 GLFLNPCSWHCTMIWSATLGLPMSLESVGAVLGLDKQ--KLTEGKNLIKYFC------LP 56 Query: 145 YDCTRAN----------HVQAWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQ 192 + T+ N + W+LF Y KRDVE + ++L P+ D + LDQ Sbjct: 57 CNPTKVNGGRTRNKYFHDKEKWELFKSYNKRDVEVEMSIQEKLSLFPVPDFLWQEFYLDQ 116 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 TINDRG ID V +L + + L ++ +T + + +R +L G++ Sbjct: 117 TINDRGIEIDSLFVESAIKLDQEVKTHLMSELKHVTG--LENPNSVLQMRSWL-KEHGLE 173 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 + + + + L + + +++ R + S++ K + A D R RG +FY Sbjct: 174 MESLGKKEVAKELK--TVGKELAEVLRLRQQLAKSSVKKYTAMKNAACMDYRERGMFRFY 231 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA----DPLGLASDCVRSCI 368 GA+RTGR++G + Q QNLP+ + +++ E + D S +R+ Sbjct: 232 GANRTGRFAGRLVQLQNLPQNHLPDLAEARSLVKQGNVEALEMLYEDIPDTLSQLIRTAF 291 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSK 426 I G K +VAD + IEARVLAW+AGE W+++ FA G+DIY ++ ++ F+ P++K V+ Sbjct: 292 IPRTGFKFIVADFSAIEARVLAWLAGEKWRMRVFAEGKDIYCSSASQMFSVPVEKHGVNG 351 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 R GK+ ELALGY G K M Sbjct: 352 HLRQKGKIAELALGYGGSVGALKAMG---------------------------------- 377 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 A+ L + + AWR + V LW D+ V E S+ Sbjct: 378 ------ALDMGLTEEELQPLVDAWRKSNPMVTTLWWDVDRAVKQCVHEHISVRTH----- 426 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKL 597 +V + I LPS R L Y + + + T + R +YG K Sbjct: 427 -NIVFTYKSGFLIIKLPSKRCLYYVKPRVEENKYGGESVTYEGVGSTKKWERLESYGPKF 485 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI QAI+RDIL M+ T Y IV VHDE + ET SV ++C LM + P W Sbjct: 486 VENITQAIARDILLYAMQ--TLKEYRIVAHVHDEAIIETDKN--VSVQSVCELMGRTPPW 541 Query: 658 AKGLPLKAEGYEAKRYRK 675 A+GL L+A+GYE + Y+K Sbjct: 542 AEGLVLRADGYECEFYKK 559 >gi|290466795|gb|ADD25725.1| putative DNA polymerase [Lactococcus phage 1358] Length = 653 Score = 540 bits (1392), Expect = e-151, Method: Composition-based stats. Identities = 209/700 (29%), Positives = 315/700 (45%), Gaps = 76/700 (10%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIET S L GV+ YA I L +Y + DEPV D + +PS +L+ Sbjct: 3 KPLHIDIETFSDVDLAGCGVYRYAASPAFYIQLFSYRFGDEPVTRLDLQQGDVIPSKVLR 62 Query: 60 YLRDETVMCVAHNSLFERILFKKTL-GIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 LRD + VAHN+ FER+ L G + W CT V GLP SL AL Sbjct: 63 ALRDPKRIKVAHNAQFERVCIGYELDGRPLDPTNWRCTMVWGSCLGLPQSLDGMGKALGL 122 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + K +EGK LI F CK + + H + W+ +G+Y + DVE + Sbjct: 123 --DVQKDKEGKRLIQYFSKPCKPTKANGGRTQNLPEHAPEDWEHYGKYNEIDVEVETGIS 180 Query: 175 KRL---IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L L E + DQ IND G +D+ V + +L + +K+ + +LT Sbjct: 181 DKLAAIYELPADEWRGYENDQRINDAGVPVDVPFVRQAIKLKDKLKKRSSMKLRRLTG-- 238 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL---ILNRLASSGSA 288 + S + L+ + G + + + + L+ + Q ++ I + G+A Sbjct: 239 VESVTKVQQLKAWA-AAQGYPVESLDKQHCEDYLNDPELHQDFPEVYRMIELYQEAGGAA 297 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + + + DG ++G L+F GA T RW+G Q QNLPR + L Q + Sbjct: 298 VAKYDKIMAQLMPDGTIKGQLRFCGAGATARWAGKGVQVQNLPRVYLKADKLEAARQIVA 357 Query: 349 RGETIA-----DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +G+T+ +P+ + + VR+ + + V+D + IEARV+AW AGE W +KAF Sbjct: 358 KGKTVGLKKFGNPIDVITQLVRTSLKPPTDYEFGVSDYSAIEARVVAWFAGESWVLKAFE 417 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFS 463 +GEDIYV T +K ++ ++ ++ R GK LALGYQGGA M Sbjct: 418 DGEDIYVATASKMYHVTGEE-AEAMRQKGKQATLALGYQGGANALIVMG----------- 465 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A++ + + + WR + ++ LW Sbjct: 466 -----------------------------ALRAGIPEEELPELVQLWRKANPNIVNLWHT 496 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRD--VHIVLPSSRRLVYSDVK---GDCS 578 + + + GG+ R V +LV+ + + + LPS R+L Y D K S Sbjct: 497 VDKAARMAINNGGA--KRYVLADGKLVISYKGDEHVLQVQLPSGRKLNYFDCKIRDNKIS 554 Query: 579 YLNTATSQLMR--ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSET 636 YL R TYGGKLTEN+VQA SRD+L + G V VHDE ++ Sbjct: 555 YLKGVRGDGSRFYADTYGGKLTENLVQATSRDLLLAALMRIEAAGIQTVFHVHDETINIV 614 Query: 637 PDTPYFSVGTLCSLMTKN-PSWAKGLPLKAEGYEAKRYRK 675 P+ + + +LMT P WA GLPL +EG K YRK Sbjct: 615 PEGTK--IEEINNLMTSPAPEWADGLPLDSEGDVIKYYRK 652 >gi|295096879|emb|CBK85969.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 591 Score = 530 bits (1366), Expect = e-148, Method: Composition-based stats. Identities = 205/564 (36%), Positives = 296/564 (52%), Gaps = 15/564 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A DEPV +WD T +P L + + D Sbjct: 5 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPGRLQKAIAD 63 Query: 64 ETVMCVAHNSLFERILFKKTLG-IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + + RW T V A +GLP +L C L + Sbjct: 64 PDTLLYFHNSHFDRTVLRHAIPRLAPDVTRWRDTMVQALAHGLPGALGALCEVLGVPQDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE+ KRL + Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVHKRLPKWN 183 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + +TDG ++++ Q Sbjct: 184 YKGTELALWHRDQQINDRGVCMDVQLAQAAIEAVDQEQKRLAKRTQVMTDGEVQAATQRD 243 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ RL +S ++ K +L + V Sbjct: 244 ALIKHIVESYGVELPDMQRSTLERRMADPDLPSAVKELLAIRLQASTTSTSKYKSLMKGV 303 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 SSDGRLRGTLQF GASRTGRW+G +FQPQNLPR ++ + + I+AL G + Sbjct: 304 SSDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLEQDQIDEGIEALKAGCADLLFDNI 363 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CI+A GKKLVV+DL+ IE R LAW+AGE WK+ AF G D+Y Sbjct: 364 MELTSSALRGCIMAPEGKKLVVSDLSNIEGRKLAWLAGEQWKLHAFREYDEGTGPDLYKL 423 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA+AFN D V K QR IGKVMEL LG+ GG F T A GLDL + + Sbjct: 424 AYARAFNISPDDVDKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLDELANAALPNIP 483 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 + +A++ + + + + +++ AC+ +K+ WR H W +L Sbjct: 484 RDVIREAKNWYDESVKRKATYGLSERVF-IACDSLKRLWRRAHPATCDFWYELERTVRAA 542 Query: 532 VQEGGSISARRVANV-PRLVMRRH 554 + + R++ PR M H Sbjct: 543 IATPTKDAVLRLSESPPRWCMAAH 566 >gi|269975277|gb|ACZ55501.1| DNA polymerase I [Staphylococcus phage SA1] Length = 645 Score = 530 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 192/684 (28%), Positives = 302/684 (44%), Gaps = 84/684 (12%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 A++ + V+ D +P +L + L D V A N+ FER++ ++ LGI P K W Sbjct: 3 AWSINGGAVQHVDLHRGKKLPGELREALEDPDVEKWAFNAQFERVMTRRVLGIKTPYKAW 62 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS--IDSPPYDC-TRA 150 CT LA G L + E K EGK LI F K P++ A Sbjct: 63 RCTMALAYMLGFAGDLLAVGTQIGLPEDKLKDPEGKRLIDLFSKPQRVTKKNPFEWRNEA 122 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLI--PLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + W F +Y RDVE + RL+ P+ D E D++ LDQ IND G ID + Sbjct: 123 TDPEDWWHFCKYNIRDVETELAIKARLMRYPVLDAEWDMYALDQFINDTGVMIDREFAYS 182 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L + ++ E++ +T + + L +L G D+ T+ ++ + Sbjct: 183 ALALAEARKPQIIEEMADITG--LNNPNSPAQLTPWLKER-GYPFSDLRSDTVNKVIREA 239 Query: 269 N---ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + + A ++ RL S+ +++ K T+ +A DGR R +LQF GASRT RW+G Sbjct: 240 DENGVDPEAIRVLQMRLNSAKNSLSKYQTMIDAAGEDGRFRFSLQFAGASRTNRWAGRRI 299 Query: 326 QPQNLPRQERSEEILT-----------QTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 Q QNLPR + E +T + + AL + +P+ C+RS I + G Sbjct: 300 QTQNLPRTPKLIEDVTDLSIVNKMIHQRDLDALTLY--VGEPMDALVGCIRSAFIPTPGH 357 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 K +VADL+ IE+ V+ W+ W + A D+Y + A + P ++ +K R+ K Sbjct: 358 KFIVADLSSIESVVIGWLTDCKWFMNTLAAKHDLYRSFAAHWLHLPYEE-TKPHRSKAKP 416 Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 L GY+ G GL W AE+ + M + E +V Sbjct: 417 ATLGAGYRLGGGHMDENGKKTGL-----------------WGYAENMGVHMTQKEAEESV 459 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 +A+R +++ W DL V++ R+ L++ Sbjct: 460 -------------QAFRDLCPEIVRAWYDLENAVFKVIR------TRQAVVWGCLIIEYT 500 Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYL-----------------------NTATSQLMRER 591 K + I LPS R++ Y + + + ++ + Sbjct: 501 KPFLTIRLPSGRKMYYFRPRLVERQMTVQKGPKKGEKYTKTNFQYEGKVEGSGTKWGKIY 560 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 ++GGKL ENIVQA++RD+L EG+K A + G+ IV+ +HDEIV+E P+ +V L S M Sbjct: 561 SHGGKLVENIVQALARDVLAEGLKKAHRMGFRIVMHIHDEIVTEVPEDSPLTVDDLISCM 620 Query: 652 TKNPSWAKGLPLKAEGYEAKRYRK 675 WA+GLPL A G+E YRK Sbjct: 621 AAELPWAEGLPLGAAGWEGYFYRK 644 >gi|331007743|ref|ZP_08330869.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] gi|330418451|gb|EGG92991.1| phage-like DNA polymerase [gamma proteobacterium IMCC1989] Length = 601 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 208/664 (31%), Positives = 303/664 (45%), Gaps = 84/664 (12%) Query: 33 CAYAWDDEPVKLW----DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-GID 87 AYA DE LW D E PS+ A NS FE ++ + Sbjct: 1 MAYAIGDEDPILWLPGDDLPEFVTNPSEF---------TIYAWNSFFEWCIWHHVQEWSN 51 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 P W T+ LA +P +L AL + K + GK LI R K P Sbjct: 52 APIFLWTDTAALAAVLAMPRALGACAKALGLPQDQQKDKRGKYLIQRLSK------PNRG 105 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 R + F EYC++DV R + RL PLS ER +W LDQTIN RG ID V Sbjct: 106 KRIQDADLLEEFYEYCRQDVVVERAVLARLRPLSTQERKVWELDQTINIRGVFIDNQSVE 165 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 +I Q +KL++++ +LT + + Q + Y+ G L+ + L+++L Sbjct: 166 NALLIIDQVTEKLNQEVAQLTASHLTNVSQRQRVMNYISDELGYSLIKFDKAYLETVLED 225 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 + +A+ LI R ++ K L + V+ D R G L ++GA+ TGRWSG FQP Sbjct: 226 ETLPPIARRLIEIRQQLGKTSTAKYAALKKIVTEDNRAHGLLMYHGAT-TGRWSGKHFQP 284 Query: 328 QNLPRQERSEEILTQTIQALNRGET------IADPLGLASDCVRSCIIASNGKKLVVADL 381 QNLPR + I+ ++ DP+ S +R I A GK+L+V D Sbjct: 285 QNLPRPSFKDT--DNCIRLFKHADSELLELIYDDPMEALSSSLRGMICAPEGKRLIVVDY 342 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IEARVL W+AG++ + G +IY T ++ + P +KV++EQR IGKV LALGY Sbjct: 343 SQIEARVLPWLAGQEDALTKIRQGVEIYKITASQIYGVPPEKVNEEQRFIGKVATLALGY 402 Query: 442 QGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 QGGAK F+ MA G+++ Sbjct: 403 QGGAKAFQGMAEVYGVEIDT---------------------------------------D 423 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 + +K WR ++ +++ W + + V G + + + R + Sbjct: 424 LADEIKVDWRVANRKIVKFWWGVEKAALNAVTHPG-----KTFEIRAIKFRFTDNYLFCR 478 Query: 562 LPSSRRLVYSDVKGDCSYL----------NTATSQLMRERTYGGKLTENIVQAISRDILC 611 LPS R L Y K N+ T + R+ TYGGKL ENI QA++RD++ Sbjct: 479 LPSGRLLAYYQPKTSIGKFDKEQVTFMGTNSLTRKWERQNTYGGKLVENITQAVARDLMA 538 Query: 612 EGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAK 671 E M GY++VL+VHDE+++E D + SV LM + P WAKGLP+ +EG+E Sbjct: 539 EAMLRVENAGYEVVLSVHDELIAEANDD-FGSVEEFEQLMCELPVWAKGLPVTSEGFECL 597 Query: 672 RYRK 675 RYRK Sbjct: 598 RYRK 601 >gi|313813472|gb|EFS51186.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] gi|315106933|gb|EFT78909.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] Length = 538 Score = 528 bits (1359), Expect = e-147, Method: Composition-based stats. Identities = 174/589 (29%), Positives = 268/589 (45%), Gaps = 74/589 (12%) Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY----DCTRANHVQAWQLFGEYC 163 SL AL+ + K GK LI +FC + S ++ +W F +Y Sbjct: 2 SLDAVGAALDL--DVQKDTAGKRLIKQFCTPATPSVLNGGGTRNLPSSDPTSWAQFIDYN 59 Query: 164 KRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +RDVE + RL P+ + E D + LDQ IND G +D L L Q R Sbjct: 60 QRDVEVELAIHDRLSSFPIPEAEWDAYALDQRINDTGILLDHTLADAAVALDDQHRAATL 119 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +LT + + L+ +L G ++ +++ +++ L + T K+++ R Sbjct: 120 ARARELTG--LENPNSPIQLKEWL-TTHGCEMSSLAKADVEAALESA--TGKVKEVLELR 174 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S++ K + +DGR RG +QFYGA RTGR++G + Q QNLPR + Sbjct: 175 GDLAKSSVKKYQAMHNVTGTDGRARGLIQFYGAGRTGRFAGRLVQVQNLPRNYLPDLDQA 234 Query: 342 QTIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +T+ + + S +R+ I S G + +VAD + IEARV+AW+AGE Sbjct: 235 RTLTRQRNLDALELLYDSVPDTLSQLIRTAFIPSAGCRFIVADYSAIEARVIAWLAGETS 294 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + AF +G+D+Y T ++ F P++K ++ E R GK+ LA GY G K M Sbjct: 295 TLAAFRDGKDLYCETASRMFGVPVEKHGINAELRQKGKIATLACGYNGSVGALKAMG--- 351 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 A++ L + + AWRA + Sbjct: 352 -------------------------------------ALRMGLAEHELKPIVDAWRAANP 374 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK- 574 +++LW D+ + + + R+ + L + I LPS RRL Y + Sbjct: 375 NIVRLWADVEQAALDAI------TTRQAVRLRNLRFTAESGILFITLPSGRRLAYVKPQL 428 Query: 575 GDCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 G+ + T+ + R TYGGKL ENIVQA++RD+L M + G+ IV+ Sbjct: 429 GENRWGGTSITYSGVTTGRKWGRLETYGGKLVENIVQAVARDLLVHAMTLVAQAGHKIVM 488 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDEIV + P+ F++ C LMT P WA GLPL A+GYE YRK Sbjct: 489 HVHDEIVIDEPEDSGFTIADACQLMTTPPDWAAGLPLDADGYECDYYRK 537 >gi|217965857|ref|YP_002351535.1| DNA polymerase [Listeria monocytogenes HCC23] gi|217335127|gb|ACK40921.1| DNA polymerase [Listeria monocytogenes HCC23] Length = 545 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 173/598 (28%), Positives = 270/598 (45%), Gaps = 73/598 (12%) Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ-- 154 V GLP+SL AL ++ K EGKALI FC + N+ + Sbjct: 1 MVHGTLLGLPASLDMMSKALRLAQE--KDNEGKALIRYFCMPCKPTKANGGRTRNYPEHA 58 Query: 155 --AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 W F EYC++DV R + K++ P + E+ W LDQ I D+G RID+DLV Sbjct: 59 SEKWAKFIEYCRQDVVVERSIAKKIAKFPFPEDEQRNWELDQRIADKGVRIDVDLVKHAI 118 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + + L + LT + + L+ +L G + +++ ++ +L+ ++ Sbjct: 119 ACQERYQASLSKKAKGLTG--LENPNSVQQLKDWLAD-MGYPVSSLNKDSVSELLADEDL 175 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + ++++L R S ++I K + A DGR+RG LQF GA+RTGRW+G + Q QNL Sbjct: 176 DEDVREMLLLRQEMSKTSIKKYEKMQHARCHDGRVRGLLQFNGANRTGRWAGRLVQVQNL 235 Query: 331 PRQERSEEILTQTIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 PR + + + + L G+ ++ + S +R+ IA +G + D + I Sbjct: 236 PRNYIKD--IAEVRKDLKAGDYEAFEMMYSNVPDVLSQLIRTAFIAEDGYTFDITDFSAI 293 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 EARV+AW+AGE W++ F + IY + ++ F+ PI++V K R GKV ELALGY GG Sbjct: 294 EARVIAWLAGEQWRLDVFNSHGKIYEASASQMFHIPIEEVDKNLRQKGKVSELALGYNGG 353 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 M A++ L + Sbjct: 354 VNALIAMG----------------------------------------ALEMGLKENELQ 373 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 + AWR + LW+ + + + S R+ L + I LPS Sbjct: 374 GIVDAWRKASPAITSLWRGVEKHAKLAI------STRKSQKYKGLTFYYEAGILFIKLPS 427 Query: 565 SRRLVYSDVK-------GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R L Y K Y ++ TYGGKL ENIVQAI+RD L ++ Sbjct: 428 GRNLAYFRAKLVPGKYGPQICYEGVTDKGWRKQYTYGGKLVENIVQAIARDCLAISLRRI 487 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G D V+ VHDE ++E ++ SV L +++ + SWA GLPL+ +G+ + Y K Sbjct: 488 EDTGIDTVMHVHDEAITEVQESES-SVDKLNAILAEPISWAPGLPLQGDGFSSDFYMK 544 >gi|284048438|ref|YP_003398777.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] gi|283952659|gb|ADB47462.1| DNA-directed DNA polymerase [Acidaminococcus fermentans DSM 20731] Length = 971 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 145/477 (30%), Positives = 222/477 (46%), Gaps = 41/477 (8%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ YAE I L YA D V++ D + +P ++L Sbjct: 1 MKTLSLDLETYSDVNLAKCGVYKYAESPAFEILLFGYAVDGGAVQVIDLAQGETIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL--------------------GIDIPSKRWICTSV 98 L D+TV A N+ FER+ + L + W C+ V Sbjct: 61 DALTDDTVTKWAFNANFERVCLSRYLTDLGRSVDPFQDQHPLSQECARFLSPAGWKCSMV 120 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS----PPYDCTRANHVQ 154 + GLP SL+ LN KM+EG+ LI FC ++ + + Sbjct: 121 WSAYMGLPLSLEGVGAVLNLDNQ--KMKEGRELIRYFCVPCKETRTNGGRTRNLPQHALD 178 Query: 155 AWQLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W F Y KRDVE + +RL P+ + + + LDQ INDRG IDL+L + + Sbjct: 179 KWNQFKSYNKRDVEVEMAIQQRLQKYPVPEQVWEEYHLDQEINDRGIAIDLELAKQAVAM 238 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 A+ R+ L + + T + + + +L G+ + + +K +L + Sbjct: 239 DAKSRESLMAALKEKTG--LENPNSVLQMLGWL-EDHGLKTDSLGKKQVKELLK--TAQE 293 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + ++ R + S++ K + AV DGR RG QFYGA+RTGR +G Q QNLP+ Sbjct: 294 PLRSVLQLRQKLAKSSVKKYQAMENAVCEDGRARGMFQFYGANRTGRVAGRHIQLQNLPQ 353 Query: 333 QERSEEILTQTIQALNRGETIADPL----GLASDCVRSCIIASNGKKLVVADLAGIEARV 388 + + + E + + S +R+ + G K VV+D + IEARV Sbjct: 354 NHLPDLSEARELVRQGNYEALDLLYDSIPDVLSQLIRTAFVPRAGMKFVVSDFSAIEARV 413 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQG 443 ++W+AGE WK AFA G+DIY +T ++ F P+ K V+ E R GK+ ELA +G Sbjct: 414 ISWMAGEKWKSAAFAAGKDIYCSTASQMFGVPVVKHGVNGELRQKGKIAELACIAEG 470 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 85/192 (44%), Gaps = 19/192 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A+ + + ++WR+ + ++ W + +++ + + V + Sbjct: 789 ALDMGIPEEELGSLVQSWRSANPHIVDFWWQVDGAVKTAIKQRIPVWVNNIRFVCQ---- 844 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA---------TSQLMRERTYGGKLTENIVQ 603 + I LPS R+L Y + + T + R +YG K ENIVQ Sbjct: 845 --SGMLFIELPSGRQLSYVKPRIGENKFGGESVTYEGIGATKKWERLESYGPKFVENIVQ 902 Query: 604 AISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPL 663 +RDILC M+ T IV VHDE++ E SV +C M++ P WA+GL L Sbjct: 903 GTARDILCYAMQ--TLRCCAIVGHVHDELIIECSKE--VSVDAICEQMSRTPPWAEGLVL 958 Query: 664 KAEGYEAKRYRK 675 +A+GYE Y+K Sbjct: 959 RADGYECAFYQK 970 >gi|211731861|gb|ACJ10159.1| DNA polymerase [Bacteriophage APSE-3] Length = 502 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 202/505 (40%), Positives = 281/505 (55%), Gaps = 19/505 (3%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNT--ATSQLMRE 590 G R +L +RR K + I LPS R L Y + G +Y+ T + + R Sbjct: 362 GIAFKCR-----KLSVRRDKGWLRICLPSGRSLCYPSARTENGQITYMGTNPYSRKWERL 416 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 +TYGGK+ ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L Sbjct: 417 KTYGGKIIENICQSTARDVLAYNMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKL 476 Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ N WA LPL A G+E RYRK Sbjct: 477 LSFNSDWAWDLPLSANGFETYRYRK 501 >gi|227544664|ref|ZP_03974713.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185389|gb|EEI65460.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 143/456 (31%), Positives = 227/456 (49%), Gaps = 21/456 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M +L IDIET S L + G + YA+ + L YA D PVK+ D T+ +PS ++ Sbjct: 1 MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q L D ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 QALDDPAIIKSAFNAQFERVCLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPP-YDCTR---ANHVQAWQLFGEYCKRDVEATRELF 174 K+ GK L+ FC + + TR + WQ F +Y +RDVE E+ Sbjct: 121 PRQ--KITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVEVEMEIT 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ P+ E + + +DQ INDRG RID LV + + + + +LT + Sbjct: 179 QKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G++ +++ ++ +L + T ++ R S S++ K Sbjct: 237 ANPNSPLQLKNWLH-QQGVETDSLAKASVAQLLQTTTGT--VHQVLALRQLLSKSSVKKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR--- 349 + +A+ DG + G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 294 QAMQKAMCKDGCVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARALVKQGNTTA 353 Query: 350 -GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + S +R+ I S G VAD + +EARV+AW++GE+W+ AFA EDI Sbjct: 354 LAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGEEWRQAAFAKNEDI 413 Query: 409 YVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQ 442 Y + ++ F P+ K ++ E R GK+ ELALGY Sbjct: 414 YCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449 >gi|227544275|ref|ZP_03974324.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|227185735|gb|EEI65806.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] Length = 449 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 143/462 (30%), Positives = 225/462 (48%), Gaps = 33/462 (7%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L YA D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EVLDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCKRDVE 168 K+ GK L+ FC P T+AN WQ F +Y +RDVE Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQRDVE 172 Query: 169 ATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E+ ++L P+ E + + +DQ INDRG RID LV + + + + Sbjct: 173 VEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKE 232 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 LT + + L+ +L GI +S+ ++ +L + T ++ R S Sbjct: 233 LTG--LANPNSPLQLKDWL-QQQGIKTNSLSKASVAQLLQTTTGT--VHQVLALRQLLSK 287 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 S++ K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 288 SSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARELVK 347 Query: 347 LNR----GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 + S +R+ I S VAD + +EARV+AW++ E W+ ++F Sbjct: 348 QGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEKWRQESF 407 Query: 403 ANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQ 442 A EDIY + ++ F P+ K ++ E R GK+ ELALGY Sbjct: 408 AKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG 449 >gi|34610177|ref|NP_919002.1| DNA polymerase I [Burkholderia phage BcepNazgul] gi|34304552|gb|AAQ63369.1| DNA polymerase I [Burkholderia phage BcepNazgul] Length = 693 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 190/729 (26%), Positives = 306/729 (41%), Gaps = 96/729 (13%) Query: 3 KLFIDIETRSPQPLPKVGVWAYA--EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ++ +D E+RS + LP G+ Y+ E I + +++++ V+ W+ + P+++ + Sbjct: 4 EIRLDYESRSEEDLPTCGLDIYSAHESTEILMASWSFNGGRVQQWEIRDG-KFPAEVREA 62 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D V+ A N+ FER++ ++ L I+ P K W CT A +L+ L + Sbjct: 63 LEDPNVIKRAWNAQFERVMTRRVLKINTPYKNWRCTMARAYMLSFAGNLEMVGGQLGLPQ 122 Query: 121 HLTKMEEGKALIARFCKGS--IDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFKRL 177 K+ GK LI F K P+ W F Y ++DV A + + L Sbjct: 123 DKVKLATGKKLINLFSKPQRITKKNPHKWLDWQTNPFEWDDFLIYNQQDVIAEAAIDEWL 182 Query: 178 IPLS--DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 P D E +L+ LDQ INDRG +DLD + + + +L + +T + + Sbjct: 183 APYPTLDEEWELYELDQLINDRGVPVDLDFCNSATAMADRRKLELVRQMRAITG--LENP 240 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA----KDLILNRLASSGSAILK 291 L+ ++ G D+ + T+K +L+ + +++ R+ S+ +++ K Sbjct: 241 NSPQQLKPWV-KARGYRFDDLGKDTVKKVLAEHKDEPVLTGRCDEVLKMRMQSARTSVGK 299 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE----------ILT 341 V RLR LQF GA RT RW+G Q NL R ++ E +T Sbjct: 300 YKKFVSLVGPGRRLRFPLQFGGAQRTQRWAGRGVQVHNLGRTPKALEPDGDNDWALCTVT 359 Query: 342 QTIQA---LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 I+A G + +P+ + CVRS I A G + V DL+ IE V+AW+A Sbjct: 360 NAIRAGDYDLLGLMMKEPMDGLAGCVRSAIYAPEGYEFVTCDLSSIETVVIAWLADCQPL 419 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 + F G Y + + +V+ + R + K L GY+ G GL Sbjct: 420 LNVFREGRCAYREFATRLYGVEYPEVTSQMRTMSKPAVLGAGYRLGGGDLSHEGKRTGL- 478 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 W AE+ + M Q A + VK +R + V Sbjct: 479 ----------------WGYAENMGIDMSRQ------------EAHDSVK-MYREAYPEVP 509 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC- 577 QLWKDL ++ R V+ + +LPS RR+ Y + + Sbjct: 510 QLWKDLEAAIIRTIKTKAVTRVRYVS------FEIVGEFLVAILPSGRRMYYHRPRIEKK 563 Query: 578 ----------------------------SYL--NTATSQLMRERTYGGKLTENIVQAISR 607 SY+ N + +R+ ++GGK+TEN+VQAI+R Sbjct: 564 KFQKKNWKTGELLWNEDGSPQTYEKIGFSYMGFNQDIKKWLRQDSHGGKMTENLVQAIAR 623 Query: 608 DILCEGMKNATKNGYDIVLTVHDEIVS-ETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 +IL G+ NA K G +IVL VHDEIV+ + L MT W + +P+ A Sbjct: 624 EILKYGLFNAHKKGLNIVLHVHDEIVTLRKIGDASKGLHVLKECMTAKRKWYEEMPVGAA 683 Query: 667 GYEAKRYRK 675 G+ A YRK Sbjct: 684 GWSAAFYRK 692 >gi|295114046|emb|CBL32683.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Enterococcus sp. 7L76] Length = 545 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 141/501 (28%), Positives = 235/501 (46%), Gaps = 34/501 (6%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M L +D+ET S L K GV+ Y+E I L AY+ D PV++ D +P+++L Sbjct: 1 MKHLSLDLETYSSVDLSKCGVYKYSESPDFEILLFAYSVDGGPVEVVDLKMDETIPAEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGID--IPSKRWICTSVLARTNGLPSSLKNACLAL 116 L DETV+ A N+ FER+ + LG+D + + W CT V T GLP SL L Sbjct: 61 TSLSDETVIKHAFNASFERVCLSRFLGLDGFLNPRGWQCTMVWGATLGLPLSLVGVGAVL 120 Query: 117 NFSEHLTKMEEGKALIARFC---KGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 ++ K+ EGK LI FC + + +H W F Y RDVE Sbjct: 121 GLNKQ--KLTEGKDLIRYFCVPCNPTKVNGGRTRNLPHHAPTKWSAFKTYNSRDVEVEIA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L P+ D + LDQ INDRG ID D V +L + L++ + +LT Sbjct: 179 IQGKLSNFPVLDSVWKEYWLDQEINDRGIEIDKDFVEAAVQLDELSKAGLNQQLQELTG- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + +R +L G++ + + + +L L K +++ R + S++ Sbjct: 238 -LENPNSVLQMRGWLLD-HGLETESLGKKAVDELLEQPIDENL-KQVLVLRQQLAKSSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 K + SD R RG QFYGA+RTGR++G QNLP+ S+ +++ + Sbjct: 295 KYQAMQNFACSDNRSRGLFQFYGANRTGRFAGRGIHLQNLPQNHMSDLSEARSLVKQSNF 354 Query: 351 ETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 E + + + S+ +R+ + G K +V+D + IEARV+AW++GE W+ + F NG Sbjct: 355 EMLNILYGNVPNVLSELLRTAFVPREGMKFIVSDFSAIEARVIAWLSGEKWRQEVFKNGG 414 Query: 407 DIYVTTYAKAFNTPIDKV-------------SKEQRAIGKVMELALGYQGGAKVFKTMAS 453 DIY + ++ F P++K SK + +++ +A+G G + Sbjct: 415 DIYCASASQMFGVPVEKHGVNGLTGRLEELDSKLKELESEIISMAIG-GQGYDELASQIF 473 Query: 454 HCGLDLQQFSQNVKSTSTFED 474 + ++ + + + + Sbjct: 474 SLRDERDAVAKQIAANTNLQQ 494 >gi|332088061|gb|EGI93186.1| DNA-directed DNA polymerase [Shigella boydii 5216-82] Length = 975 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 178/449 (39%), Positives = 254/449 (56%), Gaps = 13/449 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ R +S ++ K L + V Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMKGV 304 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 364 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVT 411 + L S +R CIIA GKKLVV+DL+ IE R+LAW+AGE+WK+ AF G D+Y Sbjct: 365 MELTSSALRGCIIAPTGKKLVVSDLSNIEGRMLAWLAGEEWKLNAFREYDAGTGPDLYKL 424 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALG 440 YAKA+ +++V+K+QR IGKV+ELA Sbjct: 425 AYAKAYGIEVERVTKDQRQIGKVLELACI 453 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 78/246 (31%), Positives = 120/246 (48%), Gaps = 11/246 (4%) Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAV 494 + GY GG F T A LDL + + + +A+S + + + + Sbjct: 735 IVHNCGYGGGVSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGL 794 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 +++ AC+ +K+ WR H W +L + + ++ L +RR Sbjct: 795 SERVF-IACDSLKRLWRRAHPATCDFWYELERTVRTAI-----ATPQKTLYCGYLKIRRD 848 Query: 555 KRDVHIVLPSSRRLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDI 609 + I LPS R + Y KG+ +Y+ N+ + + R +TYGGKL EN+ QA +RD+ Sbjct: 849 GAWLRIQLPSGRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDV 908 Query: 610 LCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYE 669 L M GY IVLTVHDEI+SE PD+P +S + L+ P WA +PL A G+E Sbjct: 909 LAGNMPLIEDAGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFE 968 Query: 670 AKRYRK 675 + RYRK Sbjct: 969 SYRYRK 974 >gi|259502603|ref|ZP_05745505.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169418|gb|EEW53913.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 470 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 143/522 (27%), Positives = 225/522 (43%), Gaps = 70/522 (13%) Query: 171 RELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+ ++L P+ E + + +DQ INDRG RID LV + + + +LT Sbjct: 1 MEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELT 60 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L+ +L G +S+ ++ +L + T ++ R S S+ Sbjct: 61 G--LANPNSPLQLKDWL-QQQGAKTDSLSKASVAQLLQTT--TGKVHQILALRQLLSKSS 115 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + K + +A+ DGR+ G LQFYGA+RTGRW+G + Q QNLPR + + + Sbjct: 116 VKKYQAMQKAMCQDGRVHGLLQFYGANRTGRWAGRLVQVQNLPRNSMPDLEEARKLVKQG 175 Query: 349 RGETIADPLG----LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +A + S +R+ I S VAD + +EARV+AW++ E+W+ +AFA Sbjct: 176 NVTALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNEEWRQEAFAK 235 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 EDIY + ++ F P+ K ++ E R GK+ ELALGY G K M Sbjct: 236 NEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYGGSIGALKAMG---------- 285 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A K L + + WR ++Q W Sbjct: 286 ------------------------------ATKLVLTDDELPPLVQMWRNASPHIVQFWW 315 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ + ++ + + + + L S R L Y K + + Sbjct: 316 DVDKAAKECIKTHLPQTTH------GMKFIYRSGCMFLRLRSGRYLCYPKPKIGTNRFGS 369 Query: 583 AT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 + + R TYG KL ENIVQA SRD+L E M+ +V+ +HDE V Sbjct: 370 ESITFMGINTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATENTVVMHIHDEAV 429 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + P S+ T+ LMT+ P WA GL L A G+ + Y+K Sbjct: 430 IDAPSNR--SLDTMVQLMTEVPDWANGLILNAAGFVSDFYKK 469 >gi|71274493|ref|ZP_00650781.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71164225|gb|EAO13939.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] Length = 567 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 210/571 (36%), Positives = 285/571 (49%), Gaps = 58/571 (10%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL + Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + L LT G ++++ Q AL +L G+ L DM + T++ L + + Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242 Query: 391 WIAGEDWKIKAFA----------------------------------------NGEDIYV 410 W+AGE K+ AF G+DIY Sbjct: 243 WLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 YA +F V+K+QR IGKV ELALGY GG F A+ +DL+ ++ + Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALP 361 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 E E+ +Q P F + D+ AC++ K+AWR H + WK L Sbjct: 362 PLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATD 420 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--T 584 ++ + + M+ + + + LPS R L Y+ + G SY+ T T Sbjct: 421 AIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMT 475 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F+ Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNA 535 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +LM P WA+GLPL AEG++ RYRK Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|71898326|ref|ZP_00680499.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71731849|gb|EAO33907.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 567 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 209/571 (36%), Positives = 285/571 (49%), Gaps = 58/571 (10%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL + Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + L LT G ++++ Q AL +L G+ L DM + T++ L + + Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242 Query: 391 WIAGEDWKIKAFA----------------------------------------NGEDIYV 410 W+AGE K+ AF G+DIY Sbjct: 243 WLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 YA +F V+K+QR IGKV ELALGY GG F A+ +DL+ ++ + Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALP 361 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 E E+ +Q P F + D+ AC++ K+AWR H + WK L Sbjct: 362 PLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATD 420 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--T 584 ++ + + M+ + + + LPS R L Y+ + G SY+ T T Sbjct: 421 AIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMT 475 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYGGKL ENI QA+SRD+L M GY IVLTVHDE+++E D F+ Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNA 535 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +LM P WA+GLPL AEG++ RYRK Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|170730595|ref|YP_001776028.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167965388|gb|ACA12398.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 567 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 208/571 (36%), Positives = 284/571 (49%), Gaps = 58/571 (10%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F EY +RDV A R++ KRL S E LW LDQTINDRG +D DL + Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYSGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + + L LT G ++++ Q AL +L G+ L DM + T++ L + + Sbjct: 63 ERAKCTLAHRTEALTGGAVQAATQRDALLHHLSTEHGVALPDMQQHTVERCLDDPLLPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242 Query: 391 WIAGEDWKIKAF----------------------------------------ANGEDIYV 410 W+AGE K+ AF G+DIY Sbjct: 243 WLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYK 302 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 YA +F V+KEQR IGKV ELALGY GG F A+ +DL+ ++ + Sbjct: 303 RAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALP 361 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 E E+ +Q P F + D+ AC++ K+AWR H + W+ L Sbjct: 362 PLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAATD 420 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--AT 584 + + + ++ + + + LPS R L Y+ + G SY+ T T Sbjct: 421 AIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPIT 475 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYGGKL ENI QA+SRD+L M GY IVLTVHDE+++E D F+ Sbjct: 476 RKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLTVHDEMITEADDNAAFNA 535 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +LM P WA+GLPL AEG++ RYRK Sbjct: 536 AHLAALMATPPPWAQGLPLAAEGFQTHRYRK 566 >gi|331090256|ref|ZP_08339143.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401875|gb|EGG81450.1| hypothetical protein HMPREF1025_02726 [Lachnospiraceae bacterium 3_1_46FAA] Length = 419 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 126/405 (31%), Positives = 208/405 (51%), Gaps = 19/405 (4%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L IDIET S L K GV+AYA+ I L AY++DDE K+ D + + ++ Sbjct: 7 KTLAIDIETFSDVDLIKCGVYAYADSPAFEILLFAYSFDDEETKIIDLAQGEQLTEEIKN 66 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D ++ A N+ FER K +G+ + + W+CT+V + LP SL+ L S Sbjct: 67 ALSDVGIIKTAFNANFERTCLSKYMGVRLSPESWVCTAVQSAMLALPLSLEGVGAVLGLS 126 Query: 120 EHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175 E K++EGK LI F CK + + H + W+ F YC RDV+ + + + Sbjct: 127 EQ--KLKEGKDLIRYFCVPCKPTKTNGGRSRNLPFHAPEKWKQFKTYCIRDVDVEKGIRQ 184 Query: 176 RL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L P+ + E + LDQ INDRG +D +LV + + + ++T + Sbjct: 185 KLHKFPIPESEMAFYRLDQEINDRGVLVDRELVEQSITCDLLHKDIVTNRAYEVTG--LE 242 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L+ +L G+++ +S+G + ++ ++ L + + RL + +++ K Sbjct: 243 NPNSVSQLKGWLSER-GVEIDSLSKGAVAELIEDADGEVL--EALKLRLLMAKTSVKKYE 299 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE-- 351 + +V SDGR+ G LQFYGA+RTGRW+G + Q QNLP+ S+ L +++ + E Sbjct: 300 AIERSVCSDGRVHGLLQFYGANRTGRWAGRLVQVQNLPQNHISDLELARSLVRRGQFEEL 359 Query: 352 --TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + S+ +R+ I G + +VAD + IEARVLAW++G Sbjct: 360 ELFYESTPNVLSELIRTAFIPKEGCRFIVADFSAIEARVLAWLSG 404 >gi|149882966|ref|YP_001294903.1| DNA polymerase I [Burkholderia phage BcepNY3] gi|148763617|gb|ABR10600.1| DNA polymerase I [Burkholderia phage BcepNY3] Length = 656 Score = 415 bits (1067), Expect = e-113, Method: Composition-based stats. Identities = 177/708 (25%), Positives = 286/708 (40%), Gaps = 90/708 (12%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY 60 LF+D ET S L + G+ Y + + + D E +P + ++ Sbjct: 4 RLLFLDFETSSHTDLTEHGLGRYLADQSTRAYCFTFRLPGMSTADLWEVGQRVPEVITRH 63 Query: 61 LRDETVMCVAHNSLFERI----LFKKTLGIDIPSK----RWICTSVLARTNGLPSSLKNA 112 +R + VAHN+ F+ + ++ G + + C++ AR NGLP SL A Sbjct: 64 VRAGH-LFVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 122 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 C AL K EG A++ K +P D T A+H + + +Y D +A Sbjct: 123 CEALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVG 174 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG + Sbjct: 175 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGV 234 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + ++ Y G D+ D TLK I + N+ + LI RL +S + Sbjct: 235 LAVSEVEKIKTYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCV-----FQPQNLPRQERSEEILTQTI 344 L V GRL+ + ++GA T R +G +P+ + E IL + Sbjct: 294 AILRAHVG--GRLQHSTIYHGALSGRSTARGAGGAQTLNTARPRPGKKTADCEAILDACL 351 Query: 345 QALNRGET---IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + + + L +D R A G LV ADL+GIEAR WIAG+ ++ Sbjct: 352 RHDRAYLSSPEVGPILAALADAQRQLFRATQPGHVLVGADLSGIEARFSPWIAGDLELLE 411 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL- 459 AF G D Y A F + V+K+QR IGKV LAL Y GGA F +MA++ G+ L Sbjct: 412 AFEKGVDPYKLAAAAIFQVTYEAVTKDQRQIGKVAMLALTYGGGAGAFVSMAANYGVHLP 471 Query: 460 -QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 +Q + V + FE W + + M P + + C V Sbjct: 472 PEQVDEIVLNWRAARPAFERWWSLCEYSVLMALDQPNREITMPIGRDFCSHV-------- 523 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 R + + LPS R + Y + + Sbjct: 524 -----------------------------------TFVHDGRALRMQLPSGRAISYHNAR 548 Query: 575 GDCSYL-NTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLTV 628 N + + Y L+ N+ Q ++RD+ + + + IV V Sbjct: 549 LHLEPGANVPIAIYDKPEGYIETLDRKILSNNMTQGLARDLFWSVLLDVDRV-EQIVHHV 607 Query: 629 HDEIVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +DE + E + L M + +W GLPL AEG+ R+RK Sbjct: 608 YDEALLEVREEVAELRCDQLVERMCRGEAWCPGLPLGAEGWFGLRWRK 655 >gi|41057712|ref|NP_958166.1| gp61 [Burkholderia phage Bcep43] gi|40737699|gb|AAR89352.1| gp61 [Burkholderia phage Bcep43] Length = 656 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 176/704 (25%), Positives = 287/704 (40%), Gaps = 86/704 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 LF+D E S L + G+ Y + + + + D E + +P ++ +L Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMATADLWEYGNVVPKQIVMHLT 65 Query: 63 DETVMCVAHNSLFERIL----FKKTLGIDIPSK----RWICTSVLARTNGLPSSLKNACL 114 + VAHN+ F+ + ++ G + + C++ AR NGLP SL AC Sbjct: 66 SGG-LFVAHNAPFDFWIWNLILRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 124 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL K EG A++ K +P D T +H + + +Y D +A ++ Sbjct: 125 ALGLPVQ--KDTEG----AKWMKEIAANP--DWTPTDHPEHFSRTYKYALIDTDAMVGVW 176 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG I + Sbjct: 177 ESTVPLPPREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 236 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + ++ Y G D+ D TLK I + N+ + LI RL +S + Sbjct: 237 VTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 295 Query: 295 LSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNR 349 L V GRL+ ++GA T R +G Q N PR + + A R Sbjct: 296 LRAHVG--GRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDACLR 352 Query: 350 GET-------IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 G+ + L +D R A G LV ADL+GIEAR+ W+A + K++A Sbjct: 353 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKLEA 412 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G D Y ++ D V+K+QR +GK +LALG+ G F +MA++ G+ L Sbjct: 413 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGADGAFASMAANYGVHL-- 470 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 P V + + WRA + W Sbjct: 471 ----------------------------PPEQVSE---------IVYNWRAGRPA-FERW 492 Query: 522 KDLTE--GFACVVQEGGSISAR-RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 L E + Q G I N ++ + R + + LPS R + Y + + Sbjct: 493 WSLCEYSALMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLE 552 Query: 579 YL-NTATSQLMRERTYGGKL-----TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEI 632 N + + Y L + N Q +SRD+ + + + +IV ++DE Sbjct: 553 PGANVPIAIYDKPEGYVETLDRKILSNNQTQGLSRDLFWSVLLDVDRV-EEIVHHIYDEA 611 Query: 633 VSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + E + L M + +W GLPL AEG+ R+RK Sbjct: 612 LLEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 655 >gi|331028082|ref|YP_004421796.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] gi|301341545|gb|ADK73429.1| DNA polymerase A domain protein [Roseobacter phage RDJL Phi 1] Length = 838 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 201/807 (24%), Positives = 320/807 (39%), Gaps = 146/807 (18%) Query: 6 IDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDE-PVKLWDRTE------QSAMPSD 56 ID ETRSP + K G + Y+ AY E VKLW +S P+D Sbjct: 41 IDFETRSPTDIKKRGGFLYSLDPATEAMCLAYHLPGETEVKLWHMAHPEFFIGESPAPTD 100 Query: 57 LLQYLRDETVMCVAHNSLFER-----ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 L ++ + AHN+ FER I+ + I +W C++ A LP SL+ Sbjct: 101 LFAFILAGG-LVEAHNAFFERCIWTNIMIPRYGWPVIKPDQWRCSAAKASAMSLPRSLEE 159 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKG------SIDSPPYDCTRANHVQAWQLFG----- 160 A A++ + K EG+ L+ + CK ++ +D A++ G Sbjct: 160 AVAAMDLG--IDKDMEGRKLMLKMCKPRKLRKAEMEKWMHDTGHKGRTPAYKSAGYPIVY 217 Query: 161 -----------EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 +YCK+DV A L L LS+ E + W +DQ +N RG R DL + + Sbjct: 218 HETEEDLHRLWDYCKQDVFAEHALSLSLPELSEQELETWKMDQWLNWRGARFDLTMAKQA 277 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 + ++ RK+L+ + LT I S+ + A++ +L +DL D + TLK L + Sbjct: 278 LSMASEWRKRLNSILEALTG--ITSATKRAAVKEWLVEEEDLDLPDTAADTLKHYLENEE 335 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 ++ A+ ++ + ++ K N + + A D R R + ++GA TGRW+G Q Sbjct: 336 LSARARRVLEIVRDVNKTSTRKYNAMIDKAWEGDERARDLMMYHGAG-TGRWAGKGIQVH 394 Query: 329 NLPRQERSEEILTQTIQALNRGE------TIADPLGLASDCVRSCIIASNGKKLVVADLA 382 N P ++ + + + + G+ D + S +R I+A G++L+VAD A Sbjct: 395 NFPARDLVVKDFDEAAELILDGDLDWCHALYGDVMAFLSHALRGAILAEEGRELMVADYA 454 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN------------TPIDKVSKEQRA 430 IEAR + W A + + F G+DIY + P + R Sbjct: 455 AIEARCVLWEADDQQGLGVFRRGDDIYCDMATGIYGFEVQKKIAKDWTHPDYTLHSGCRQ 514 Query: 431 IGKVMELALGYQGGAKVFKTMASHCGLDLQQF-------------------SQNVKSTST 471 GK L LGY G F G+ + Q T Sbjct: 515 FGKQAILGLGYGMGYMTFLLTCRKYGITFSRAEVLRIMGPEKLDKTEEWVRKQLCLDTPP 574 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA------------WRAKHQGVLQ 519 + + + + Q + +LI + K +RA++ V Sbjct: 575 SKMTPEEAKRYSARKRQAARS--RRRLIEAREDPAKIVHELALMKHTVDIYRARYPQVKA 632 Query: 520 LWKDLTEGFACVVQEGGSIS-----ARRVANVPRLVMR---------------------- 552 +W D V+ + +PR V Sbjct: 633 MWSDQEACAIQAVKSLPTPEELTQLHDNGIELPREVFTASDPVECGKVKWYMSEARTVVD 692 Query: 553 --------RHKRDVHIVLPSSRRLVYSDV------------KGDCSYL--NTATSQLMRE 590 + + +H LPS RR+ Y D K Y+ + T + +R Sbjct: 693 ALAGTIHVKQGKWLHCELPSGRRMSYCDPQIKLTKTSWGETKPALRYMSVDGVTRKWVRT 752 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLC 648 TYGGK+ ENI QA++RDI+ E M N+ K G YD +++VHDE+V E + + Sbjct: 753 ATYGGKIVENITQAVARDIMAEAMLNSVKEGCPYDPIMSVHDELVCEVDEDK-GDLEEFE 811 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +LM+ P WA G P+ AE KRYRK Sbjct: 812 TLMSDLPIWAAGCPIVAEAERFKRYRK 838 >gi|134288571|ref|YP_001110810.1| DNA polymerase [Salmonella phage SETP3] gi|125631936|gb|ABN47339.1| DNA polymerase [Salmonella phage SETP3] gi|126015336|gb|ABN70699.1| DNA polymerase [Salmonella phage SETP5] gi|126015338|gb|ABN70700.1| DNA polymerase [Salmonella phage SETP12] Length = 1032 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 158/451 (35%), Positives = 235/451 (52%), Gaps = 19/451 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYL-----RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N +F+R++ K G ++ + I T ++A + LP SL + Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRLVIKHCWGFELLVENIIDTMIVAFRHALPGSLASL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171 C LN + K + GKALI RF K + + T A H + W F Y K D+ + R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTAATHPKEWAEFIAYAKSDITSMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E++K++ S+ E + LDQ INDRG+++D+ L E + + +++L E+ + Sbjct: 181 EVYKKMPKWGNSEFEDRVLWLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + L+ L + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLADEDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K L SSD R RG LQ+ GA RT RW+G FQPQNL R ++ L + I AL + Sbjct: 298 TKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALLK 357 Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G+K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVM 435 IY T K F D + KE+ R IGK Sbjct: 418 IYCVTAGKMFGMDPDDIKKERKDLRQIGKAC 448 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 93/286 (32%), Positives = 123/286 (43%), Gaps = 45/286 (15%) Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA- 493 EL LGY+GG F T A + GLDL + ++ + T W + W + Q + Sbjct: 747 CELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPP 806 Query: 494 -----------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA-- 540 + DK + C+ +K+ WR H + W+DL +G V+ G Sbjct: 807 HPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAG 866 Query: 541 -------RRVANVPRLVMRRHKR------DVHIVLPSSRRLVYS---------------- 571 R + R V + + LPS R L Y Sbjct: 867 AHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRI 926 Query: 572 --DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +V+ N T Q T+GGK ENIVQA+ RD+L M N GY IVL+VH Sbjct: 927 NTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVH 986 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V ETPDTP ++V L LM P WA G PL AEG E KRY K Sbjct: 987 DELVCETPDTPDYTVAELEKLMCALPGWADGFPLVAEGAELKRYAK 1032 >gi|37626195|gb|AAQ96570.1| putative DNA polymerase [Vibrio phage VP16C] Length = 686 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 170/709 (23%), Positives = 291/709 (41%), Gaps = 119/709 (16%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-----GIDIPSKRWICTSVLARTNG 104 P+DL+ ++ + + A N FE ++ L + ++ C AR Sbjct: 13 GGPKPTDLIDHIANGGPI-AAWNITFEFWIWNMVLAKSEGWPWLQLEQCYCDMAKARRFS 71 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKG---SIDSPPYDCTRANHVQAWQLFGE 161 LP SL A AL +E K ++GK LI + C+ + P T Q + Sbjct: 72 LPGSLDTAAKALRTAE---KDKKGKQLIGKLCRPVSATKARPEPRWTLYTAPQDYADLYR 128 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 YC +DV++ + + ++ ER+ WL DQ IN RG +D++ + +++ Q ++ Sbjct: 129 YCDQDVKSEDHVSALVPDMTPAERETWLADQRINARGVLVDVESLDNALDIVGQTTRRFT 188 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ +T+G + S + L +L + G + ++ T+ L ++ A+ ++ R Sbjct: 189 MELAAITNGAVGSVSEVAKLTDFLATV-GCRMHNLKSETVAETLERDDLNPTARRILEIR 247 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 A +G+ + KL +L +SSDGRLR F+GA TGRWS Q QNL + + Sbjct: 248 EALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQLQNLTSKGPKSKTCN 306 Query: 342 QTIQALNRGETI-----------------------------------------------A 354 + + + + Sbjct: 307 GCGRIVGKSCRVEVMGAAGLCPECGANDWTDNKDWTVDAVRWALKDLKHRNLDLIIDIWG 366 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 DP+ L S C+R IA+ GKK V D + IEA VLA +A +W+I+ F IY + + Sbjct: 367 DPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRIEVFRTHGKIYEMSAS 426 Query: 415 KAFNTPIDKV----------SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 K P +++ ++++GKV ELA GY G +K + Sbjct: 427 KISGVPFEEMMAYKEKNKHDHPLRKSLGKVAELASGYGGWIGAWKAFGAE---------- 476 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 FED + + L +D PE + + W +++ K + Sbjct: 477 -----EHFEDDDAMKKAILGWRDASPE--------------IVEFWGGQYRRDPYTRKWV 517 Query: 525 TEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-------- 575 E + +I + + V + ++ LPS R L Y K Sbjct: 518 REYYGLEGAVIMAILNPGKCYAVGDITYAVFDDVLYCRLPSGRFLQYHQPKLIESDSWKG 577 Query: 576 ---DCSYLNTATS------QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVL 626 +++ T+ +R TYGG+L EN+ QA + D+ MK NGY +V+ Sbjct: 578 PEYQVTFMGYNTNSQKGPVGWVRMDTYGGRLAENVTQAAAADVQAYAMKQCENNGYPVVM 637 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 HDE+++E P + SV + +LMT W + P++A G+E RY+K Sbjct: 638 HTHDELIAEVP-GDFGSVEEMAALMTGREPWREWWPIRAAGWEDDRYQK 685 >gi|38638673|ref|NP_944374.1| gp66 [Burkholderia phage Bcep1] gi|34486055|gb|AAQ73412.1| gp66 [Burkholderia phage Bcep1] Length = 655 Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats. Identities = 179/709 (25%), Positives = 287/709 (40%), Gaps = 93/709 (13%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY 60 LF+D ET S L + G+ Y + + + + D E +P ++ + Sbjct: 4 RLLFLDFETSSHTDLTEHGLGRYLDDPSTRAYCFTFRLPGMSTADLWEVGQPVPKQIIGH 63 Query: 61 LRDETVMCVAHNSLFERI----LFKKTLGIDIPSK----RWICTSVLARTNGLPSSLKNA 112 L VAHN+ F+ + ++ G + + C++ AR NGLP SL A Sbjct: 64 LNGSP--FVAHNAPFDFWIWNTVLRRQRGYHDLPELQIGQVRCSAARARYNGLPGSLAGA 121 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 C AL K EG A++ K +P D T A+H + + +Y D +A Sbjct: 122 CEALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFTRTYKYALIDTDAMVG 173 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ +PL E+ + +D IN RG +D++ +++L A +LD ++ LTDG I Sbjct: 174 VWENTVPLPAREQAYFEMDMRINARGIGVDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGI 233 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + + ++ Y G D+ D TLK I + N+ + LI RL +S + Sbjct: 234 LAVTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSA 292 Query: 293 NTLSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQAL 347 L V GRL+ ++GA T R +G Q N PR + + A Sbjct: 293 AILRAHVG--GRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDAC 349 Query: 348 NRGET-------IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 RG+ + L +D R A G LV ADL+GIEAR+ W+A + K+ Sbjct: 350 LRGDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARMAPWLANDVPKL 409 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF G D Y ++ D V+K+QR +GKV +LALG+ GG F +MA++ G+ L Sbjct: 410 EAFEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKVADLALGFGGGDGAFASMAANYGVHL 469 Query: 460 --QQFSQNV----KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 +Q S+ V FE W + + M P V + C + Sbjct: 470 PPEQVSEIVYNWRAGRPAFERWWSLCEYSVLMALDQPGREVVMPVGRDFCSQI------- 522 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 R R + + LPS R + Y + Sbjct: 523 ------------------------------------TFVRDARALRMHLPSGRAISYHNA 546 Query: 574 KGDCSYL-NTATSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + N + + Y L+ N Q ++RD+ + + + +IV Sbjct: 547 RLHLEPGANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHH 605 Query: 628 VHDEIVSET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 V+DE + E + L M + +W GLPL AEG+ R+RK Sbjct: 606 VYDEALLEVLAELAALRQKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|62327350|ref|YP_224063.1| hypothetical protein BPKS7gp41 [Salmonella phage SS3e] gi|57472384|gb|AAW51246.1| hypothetical protein [Salmonella phage SS3e] Length = 461 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 157/451 (34%), Positives = 232/451 (51%), Gaps = 19/451 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYL-----RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N +F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171 C LN + K + GKALI RF K + + T H + W F Y K D+ + R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E++K++ S+ E + LDQ INDRG+++D+ L E + + +++L E+ + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQRKYG 240 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + L+ L + + + TL +L+ ++ A+ +I RL ++ +A Sbjct: 241 GSLTGKDFLPILQE---LAPAHRIHNAQKSTLNDLLADEDLPDDARTIIEMRLGAASTAS 297 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 K L SSD R RG LQ+ GA RT RW+G FQPQNL R ++ L + I AL + Sbjct: 298 TKYAPLLLGRSSDDRRRGCLQYGGAKRTLRWAGKGFQPQNLARGYYHDDELDRGIAALLK 357 Query: 350 GETIA--DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G D L + VRSCII G+K VVAD + +E R LAW+AGE+ + F G D Sbjct: 358 GRAHRRFDVAKLTASTVRSCIIPEAGRKFVVADYSNVEGRGLAWLAGEETALDTFRAGLD 417 Query: 408 IYVTTYAKAFNTPIDKVSKEQ---RAIGKVM 435 IY T K F D + KE+ R IGK Sbjct: 418 IYCVTAGKMFGMDPDDIKKERKDLRQIGKAC 448 >gi|23752370|ref|NP_705685.1| gp62 [Burkholderia phage Bcep781] gi|23507237|gb|AAN38060.1| gp62 [Burkholderia phage Bcep781] Length = 655 Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats. Identities = 174/703 (24%), Positives = 283/703 (40%), Gaps = 85/703 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLR 62 LF+D E S L + G+ Y + + + + D E +P ++ +L Sbjct: 6 LFLDFEASSKTDLTEAGLGRYLDDPTTRAYCFTFRLPGMSTADLWEVGQPVPKQIVGHLN 65 Query: 63 DETVMCVAHNSLFERI----LFKKTLGIDIPSK----RWICTSVLARTNGLPSSLKNACL 114 VAHN+ F+ + ++ G + + C++ AR NGLP SL AC Sbjct: 66 GSP--FVAHNAPFDFWIWNLVLRRQHGYHDLPEIQIGQVRCSAARARYNGLPGSLAGACE 123 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL K EG A++ K +P D T A+H + + +Y D +A ++ Sbjct: 124 ALGLPVQ--KDTEG----AKWMKEIAANP--DWTPADHPEHFARTYKYALIDTDAMVGVW 175 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + +PL + + +D IN RG D++ +++L A +LD ++ LTDG I + Sbjct: 176 ENTVPLPPRMQAEFEMDMRINHRGIGTDVEAAQAMEDLKAFAEAQLDYEMAYLTDGGILA 235 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 + ++ Y G D+ D TLK I + N+ + LI RL +S + Sbjct: 236 VTEVAKIKEYA-ATLGEDMDDAGRETLKKIAARDNLPDSLRQLIELRLDASRAPKKSAAI 294 Query: 295 LSEAVSSDGRLRGTLQFYGA---SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALNR 349 L V GRL+ ++GA T R +G Q N PR + + A R Sbjct: 295 LRAHVG--GRLQHHTIYHGALSGRSTARGAG-GAQTLNTARPRPGKKTADCEAILDACLR 351 Query: 350 GET-------IADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 G+ + L +D R A G LV ADL+GIEARV W+A + K++A Sbjct: 352 GDRAYLSSPEVGPILAALADAQRQLFRATKPGHVLVGADLSGIEARVAPWLANDVPKLEA 411 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G D Y ++ D V+K+QR +GK +LALG+ GG F +MA++ G+ L Sbjct: 412 FEKGIDGYKLAAMDIYSIEYDAVTKDQRQVGKAADLALGFGGGDGAFASMAANYGVHL-- 469 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 P V + + WRA + W Sbjct: 470 ----------------------------PPEQVSE---------IVYNWRAGRPAFERWW 492 Query: 522 KDLTEGFACVVQEGG--SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + + G + N ++ + R + + LPS R + Y + + Sbjct: 493 SLCEYSVLMALDQPGREIVMPVGRNNCSQITFVKDARALRMHLPSGRAISYHNARLHLEP 552 Query: 580 L-NTATSQLMRERTYGGKL-----TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 N + + Y L + N Q ++RD+ + + + +IV V+DE + Sbjct: 553 GANVPIAIYDKPEGYVETLDRKILSNNQTQGLARDLFWSVLLDVDRV-EEIVHHVYDEAL 611 Query: 634 SET-PDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E + L M + +W GLPL AEG+ R+RK Sbjct: 612 LEVLAELAALREKQLVERMCRGEAWCPGLPLGAEGWHGLRWRK 654 >gi|84662708|ref|YP_453672.1| putative DNA polymerase I [Xanthomonas phage OP2] gi|84570757|dbj|BAE72819.1| putative DNA polymerase I [Xanthomonas oryzae phage OP2] Length = 658 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 161/705 (22%), Positives = 283/705 (40%), Gaps = 87/705 (12%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---DDEPVKLWDRTEQSAMPSDLLQY 60 LF+D E S L G+ Y + + LW+ +P +L + Sbjct: 8 LFLDFEVASKTDLKAHGLARYLACPTTKPYCFTFVLPGMRQADLWEL--GQPIPRQILAH 65 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSK--------RWICTSVLARTNGLPSSLKNA 112 + VAHN+ F+ +++ L + + + C++ AR NGLP L A Sbjct: 66 IAAGK-TFVAHNAAFDALIWNDVLPRWVKADLPQLNLRGQVQCSAARARYNGLPGGLGRA 124 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 AL L K EG A + + T A H + + +Y D + Sbjct: 125 AEALGLP--LQKDREGAAAMKELMHNP------EWTPATHPELFARTYKYALLDTDVMVA 176 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L++ P+ E+ W LD IN RG+ +D++ + E+ + +D ++ T G I Sbjct: 177 LWEATQPMPPKEQLYWQLDLEINMRGFGVDVEAAEGMAEMAQLAQAMIDFEVETATQGKI 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 ++ ++ + G +L + ++K++L+ ++ ++ +D++ RL +S + Sbjct: 237 LTTSVIKQIQSFAAG-LGAELDEAGRESVKALLTRDDVPEVLRDVLTLRLDASRAPKKHD 295 Query: 293 NTLSEAVSSDGRLRGTLQFYGA--SRTGRWSGCVFQPQNL--PRQERSEEILTQTIQALN 348 L V+ GR+ + ++GA R+ Q N+ PR R + + A Sbjct: 296 AILRAHVN--GRMCHSTVYHGALSGRSTAMGCGDVQLLNVARPRPGRKVKDTITYLDAAR 353 Query: 349 RGET-------IADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 R + + PL +D R A+ G LVVADL+GIEAR W+A ++ + Sbjct: 354 RRDYDYLSRPEVGPPLAALADAQRHLFCATNPGCILVVADLSGIEARKGPWLANDEGMLV 413 Query: 401 AFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 + G D Y A F+ P D V+ +QR IGK+ LAL + GG MA GL+L Sbjct: 414 EYEQGIDGYKVEAATIFDLPDTDAVTSDQRQIGKITRLALQFGGGDGALDNMAKAYGLEL 473 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ K++ + +R H + Sbjct: 474 SE-------------------------------DLRRKIVWS--------YRESHPALST 494 Query: 520 LWKDLTEGFACVV-QEGGSISARRVANVP-RLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 W L + Q G ++ + R + + LPS R + Y + + Sbjct: 495 WWASLEYAALIALDQPGRAVVVPIGRGLCTSATFVRDTTALRMELPSGRAISYHNARLVL 554 Query: 578 SYLNTA-TSQLMRERTYGGK-----LTENIVQAISRDILCEGMKNATKNGYDIVLTVHDE 631 +A + + L+ N+ Q ++RD+ E M + IV V+DE Sbjct: 555 EPGASAPIAVYDKPNGVVETLDRKILSNNMTQGLARDLFWEAMLSVAPV-EQIVHHVYDE 613 Query: 632 IVSETPDT-PYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 ++ E P+ + L + ++K P WA GLPL AEG+ + +RK Sbjct: 614 VILEVPEERAELRLKQLEARLSKAPLWAPGLPLGAEGFVSPYWRK 658 >gi|320182116|gb|EFW57020.1| DNA polymerase, phage-associated [Shigella boydii ATCC 9905] Length = 533 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 158/539 (29%), Positives = 246/539 (45%), Gaps = 43/539 (7%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEVLGVPQDK 124 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++ RL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWN 184 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 185 YQGTELALWHRDQQINDRGVCMDMQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+++ RL +S ++ K L + V Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKEMLAIRLQASTTSTSKYKALMKGV 304 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+A N L + Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEAPNAAAKTLKCLQI 364 Query: 360 ASDCVRSCIIAS----NGKKLVVADLAGIEARVLAWIAGEDW------KIKAFANGEDIY 409 AS V + S + KL D EA + W +KAF G + Sbjct: 365 ASGAVYTDDAGSWSELHDTKLQALDSILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL- 423 Query: 410 VTTYAKAFNTPIDKVSKEQR--AIGKVMEL-------ALGYQGGAKVFKTMASHCGLDLQ 460 D+ + R GK+ L G + + DL+ Sbjct: 424 ------------DQDPQTLRDWNSGKIPVLFAHPASAGHGLNMQDGGYILVFFSHWWDLE 471 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYP-----EFAVKDKL-IGTACELVKKAWRAK 513 Q+ Q ++ + + +++ E ++ + T +++ A + + Sbjct: 472 QYQQIIERIGPTRQIQAGHNRPVFIHHIIAADTMDEMVMEQRNSKRTVQDILLDAMKKR 530 >gi|323173135|gb|EFZ58766.1| DNA-directed DNA polymerase [Escherichia coli LT-68] Length = 385 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 141/378 (37%), Positives = 203/378 (53%), Gaps = 8/378 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A +D PV +WD T +P L + + Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAINDGPVNVWDITAGGGIPHGLYEAIAA 64 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A +GLP SL C L + Sbjct: 65 PETLLYFHNSHFDRTVLRYAMPRLAPPVERWRDTMVQALAHGLPGSLGELCEILGVPQDK 124 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGKALI FCK +S T H + W+ F Y D+EA RE++KRL + Sbjct: 125 AKDKEGKALIQLFCKPRPKNSKLRRATSKTHPEEWRRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG +D+ L E + QE+K+L + ++TDG ++++ Q Sbjct: 185 YQGTELALWHRDQQINDRGVCMDIQLARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRD 244 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 AL ++ G++L DM TL+ ++ ++ K+L+ R +S ++ K L + V Sbjct: 245 ALIKHIVESYGVELPDMQRSTLERRIADPDLPSAVKELLAIRQQASTTSTSKYKALMKGV 304 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADP 356 S DGRLRGTLQF GASRTGRW+G +FQPQNLPR +E + + I+AL G + Sbjct: 305 SHDGRLRGTLQFCGASRTGRWAGRLFQPQNLPRPSLKQEQIDEGIEALKAGCADLLFDNI 364 Query: 357 LGLASDCVRSCIIASNGK 374 + L S +R CIIA GK Sbjct: 365 MELTSSALRGCIIAPTGK 382 >gi|273810592|ref|YP_003344973.1| gp38 [Sodalis phage SO-1] gi|258619877|gb|ACV84130.1| gp38 [Sodalis phage SO-1] Length = 1062 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 162/470 (34%), Positives = 230/470 (48%), Gaps = 38/470 (8%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +LF+D ET S L KVG +AYAE I +C YA D+ V+ WD TE MP +L Sbjct: 4 FERLFLDTETFSGVDLKKVGAYAYAEHPTTEIMICTYAIDEGRVQTWDCTESPKMPRELR 63 Query: 59 QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + LR + + +A+ LF+R++ ++ GID+P + T ++A + LP SL C Sbjct: 64 KALRQVSRKKAKIVMANGLLFDRLVIREKWGIDLPVSQIEDTMIMAFRHALPGSLDMQCQ 123 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATREL 173 L K + GKALI RFCK + + TR H + W F Y D+ A RE+ Sbjct: 124 VLGVDAEHAKDKAGKALIKRFCKPTPKTYKIRRYTRETHPEEWAKFLRYAALDIIAMREV 183 Query: 174 FKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + R+ + E ++ L+DQ INDRG+ +D+DL + + +++L E+ + G Sbjct: 184 YWRIPDWGNTPKEDEILLIDQLINDRGFYVDVDLANAAIKAVQAHKEELKEEAWERFGGK 243 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + LR + + + TL +L + K LI RL +S +A K Sbjct: 244 LTGNDFLPILRDI---APAFTIHNAQKSTLNDLLEDPDFPDEGKALIEMRLGASSTASTK 300 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI------------ 339 N L +S+DGR RG LQ+ GA RT RW+G FQPQNL R E S++ Sbjct: 301 YNPLVNGLSADGRRRGCLQYGGAKRTLRWAGKGFQPQNLARGEYSDDHEGKIKRREGESD 360 Query: 340 ---------LTQTIQALNRGET--IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 LT I +L RG D L + VR CII + GKK VVAD + +E R Sbjct: 361 VSFWVRSHMLTNGINSLLRGTAHWAYDISKLTASTVRGCIIPAKGKKFVVADYSNVEGRG 420 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS---KEQRAIGKVM 435 LAW+AGE + F G DIY T K F D + K+ R IGK Sbjct: 421 LAWVAGEKTALMVFKAGRDIYCETAGKMFGLDPDYIKANRKDLRQIGKAC 470 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 90/294 (30%), Positives = 125/294 (42%), Gaps = 53/294 (18%) Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ----DQYP 490 EL LGY GG F A + GLDL + +K T W A+ + + + + P Sbjct: 769 CELGLGYGGGVAAFLQFAKNLGLDLYTMADVMKGTFPDHIWAAAKRGYEYARINEAKRPP 828 Query: 491 EFAVKD--------KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA-- 540 + KD K + C+ +K+ WR H + W +L + C ++ G Sbjct: 829 KPGKKDERPTYILPKNVWLTCDAIKRMWREAHPKTVAFWAELEDAVLCAIRNPGKAYWAG 888 Query: 541 -------RRVANVPRLVMRRH-------------KRDVHIVLPSSRRLVYSDV------- 573 R+ + R + + I LPS R + Y + Sbjct: 889 ANVRPDGRKALKIVRTKAKHDPTFDEERDDPNAAGWWLKIELPSGRIMSYPGIALSVTTE 948 Query: 574 ------------KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG 621 + N T Q + TYGGKLTENIVQA+ RDIL M G Sbjct: 949 IDEDTGKKRTSTRIKYQGENQTTRQWGFQYTYGGKLTENIVQALCRDILAWSMPGVEAAG 1008 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 Y+IVL+VHDE+++E PDT ++ LC+LM P WAKG PL AEG RYRK Sbjct: 1009 YEIVLSVHDELITEVPDTDDYTTEELCALMCDLPIWAKGFPLAAEGDCMYRYRK 1062 >gi|325478660|gb|EGC81771.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 952 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 108/328 (32%), Positives = 169/328 (51%), Gaps = 15/328 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M KL ID+ET S L K GV+ YAE I L AY+ DD VK+ D + +P ++L Sbjct: 1 MKKLSIDLETYSSVDLGKSGVYKYAESEDFEILLFAYSIDDGGVKVIDLSNGEIIPEEIL 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D+++ A N+ FER+ + LG + + W CT + + GLP SL+ L Sbjct: 61 SALSDKSIEKWAFNASFERVCLSRFLGKRLKPQGWYCTMIWSAYLGLPLSLEKVGEVLKL 120 Query: 119 SEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELF 174 + KM EGKALI F CK + + +H ++ W F EY +RDVE E+ Sbjct: 121 DKQ--KMNEGKALIRYFSIPCKPTKTNGMRTRNLPHHDLEKWSTFKEYNQRDVETEMEIK 178 Query: 175 KRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 K+L P+ E + + +DQ INDRG ID LV + R++ + ++LT + Sbjct: 179 KKLSAFPMPQSEWENYWVDQNINDRGILIDEVLVDSAIKFDEILREENMDRAIELTG--L 236 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L+ +L G+++ +++ ++S L N K+++ R S S++ K Sbjct: 237 ENPNSPMQLKEWLNEK-GLEIDSLAKKDVESALK--NAEGDIKEVLELRQELSKSSVRKY 293 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRW 320 + + +D R+RG LQFYGA+RTGR+ Sbjct: 294 DAMKNVKGNDKRVRGLLQFYGANRTGRY 321 Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats. Identities = 119/385 (30%), Positives = 176/385 (45%), Gaps = 69/385 (17%) Query: 311 FYGASRTGRW-----SGCVFQPQNLPRQERSEEILTQTIQALNRGETI----ADPLGLAS 361 F+ R GR SG + Q QNL R + L +++ E++ P + S Sbjct: 616 FFLVRRNGRVWVTGNSGRLIQVQNLRRNNLQDLDLARSLVRNKEYESLEMLYDSPSDVLS 675 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R+ I G + +V+D + IEARVLAW+AGEDW + AF NGEDIY +T ++ F P+ Sbjct: 676 QLIRTAFIPKEGCRFIVSDFSAIEARVLAWLAGEDWVLNAFKNGEDIYCSTASQMFGVPV 735 Query: 422 DK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 K V+ + R GKV LA GY G K M Sbjct: 736 VKHGVNGDLRQKGKVATLACGYGGSVGALKAMG--------------------------- 768 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 A++ L + + +WR + ++ LW D+ VV+ Sbjct: 769 -------------AIEMGLSEDELQSIVDSWREANPNIVSLWWDIDSVVKRVVK------ 809 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT---------SQLMRE 590 R LV+ K + I LPS RRL Y K + + ++ + Sbjct: 810 TRSKEEYKNLVISYEKGILFIELPSKRRLAYPKAKIGMNRFGGESIVYEGIVVGNKWDKI 869 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 +YGGK ENIVQAI+RDIL E M K G++IV+ +HDE+V E + S+ + + Sbjct: 870 ESYGGKFVENIVQAIARDILAEAMMRLEKKGFNIVMHIHDEVVIE---SDSSSIEEINEI 926 Query: 651 MTKNPSWAKGLPLKAEGYEAKRYRK 675 M+ PSWA GL L A+G+E++ Y+K Sbjct: 927 MSLVPSWAPGLILDADGFESEFYKK 951 >gi|325662096|ref|ZP_08150714.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471545|gb|EGC74765.1| hypothetical protein HMPREF0490_01452 [Lachnospiraceae bacterium 4_1_37FAA] Length = 356 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 114/402 (28%), Positives = 172/402 (42%), Gaps = 65/402 (16%) Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 K + A +D R RG QFYGA+RTGRW+G + Q QNLP+ + + + + Sbjct: 4 KQKYQAMQNAACTDHRTRGMFQFYGANRTGRWAGRLIQLQNLPQNHMDDLDAARELVRIG 63 Query: 349 RGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +++ D S +R+ IA G K VAD + IEARV+A +AGE W+ F N Sbjct: 64 DYDSLSMLYDDIPDTLSQLIRTAFIAKPGYKFYVADFSAIEARVIAHLAGESWRADVFKN 123 Query: 405 GEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 G DIY + ++ F+ ++K ++ R GK+ ELALGY G K M Sbjct: 124 GGDIYCASASQMFHVTVEKHGINGHLRQKGKIAELALGYGGSVGALKAMG---------- 173 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A++ L + + AWR + ++ LW Sbjct: 174 ------------------------------ALEMGLTEDELQPLVDAWRQSNPNIVALWW 203 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D ++ S ++ + + I LPS R+L Y + + Sbjct: 204 DFDTAIKNAIKMHCSTASHGIK------FTWRSGMLLITLPSGRKLTYVKPRIGENKFGG 257 Query: 583 A---------TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIV 633 T + R YG K EN+VQAISRD+L MK T + I VHDE++ Sbjct: 258 ESVTYEGIGATKKWERLEIYGPKFVENVVQAISRDLLMNAMK--TLSHCFICGHVHDELI 315 Query: 634 SETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E + S+ LC M + P W + L+A+GY + Y+K Sbjct: 316 IECSE--KVSLEVLCQQMARTPDWMPDILLRADGYVTEFYKK 355 >gi|262043420|ref|ZP_06016545.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039246|gb|EEW40392.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 362 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 131/350 (37%), Positives = 195/350 (55%), Gaps = 5/350 (1%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L+ D+ET P+ G AYAE + L A+A DEPV +WD T +PS L + + D Sbjct: 6 LWGDLETYCEIPITN-GTHAYAEGVEVMLFAWAIGDEPVSVWDLTAGEPIPSRLRKAIAD 64 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + HNS F+R + + + P +RW T V A + LP +L C L + Sbjct: 65 PDTLLYFHNSHFDRTVLRHAMPELAPPVERWRDTMVQALAHSLPGALAALCEVLGVPQDK 124 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K +EGK+LI FCK +S T H WQ F Y D+EA RE++KRL + Sbjct: 125 AKDKEGKSLIQLFCKPRPKNSKLRRATSKTHPIEWQRFVAYAGLDIEAMREVYKRLPKWN 184 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E LW DQ INDRG+ +D+DLV + + +K+L E V++T+G ++++ Q Sbjct: 185 YQGTELALWHRDQQINDRGFCVDMDLVHGAIRAVDRAQKRLAEQTVEITNGEVQAATQRD 244 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 A+ ++ G++L DM + T++ ++ ++ K+L+ RL +S ++ K TL ++V Sbjct: 245 AMIKHIVESYGVELPDMQKSTIERRIADPDLPPAVKELLHIRLQASATSTSKYKTLLKSV 304 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 SSDGRLRGTLQF GASRTGRW+G +FQPQNL R+ S E + I+ + Sbjct: 305 SSDGRLRGTLQFCGASRTGRWAGRLFQPQNLSRESLSREEIEFGIECMKA 354 >gi|154794286|gb|ABS86178.1| DNA polymerase [Glycaspis brimblecombei secondary endosymbiont phage 1] Length = 415 Score = 358 bits (918), Expect = 2e-96, Method: Composition-based stats. Identities = 154/418 (36%), Positives = 223/418 (53%), Gaps = 16/418 (3%) Query: 166 DVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 D+ ATRE+++ L ++ E LW LDQ IN RG +D++L + E+K+L Sbjct: 3 DILATREIYQHLPRWNMNVDETTLWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTV 62 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L+ RL Sbjct: 63 TQQLTDNAVQNATQRDALLQHITSAFGITLPDMQASTLQRRINDPDIPPALRELLSIRLQ 122 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S ++ K L +++S+DGRLRGT QF GASRTGRW+G +FQP NLPR + Sbjct: 123 SCRTSTSKYKALLKSISADGRLRGTKQFCGASRTGRWAGRIFQPDNLPRPTLDPNTIDNG 182 Query: 344 IQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 I+AL G D + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ Sbjct: 183 IEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVN 242 Query: 401 AFAN-----GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 AF+ G+D+Y YA+AFN + V+K QR IGKVMEL LGY GG F T A Sbjct: 243 AFSEFDNGKGDDLYKLAYARAFNLLPENVTKAQRQIGKVMELGLGYGGGVAAFLTFALAY 302 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 LDL + + +A S + + + + K+ T C+ +K+ WR H Sbjct: 303 SLDLAELANAALPNIPLNVKREAISWYQKSVETDKTYGLSKKVFVT-CDSIKRMWRNAHT 361 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + W D+ + +Q G R +L +RR K + I LPS R L Y Sbjct: 362 QTVSFWYDIEDAVKQAIQSPGVAFKCR-----KLSVRRDKSWLRICLPSGRSLCYPSA 414 >gi|253316034|ref|ZP_04839247.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 368 Score = 356 bits (913), Expect = 8e-96, Method: Composition-based stats. Identities = 122/415 (29%), Positives = 182/415 (43%), Gaps = 66/415 (15%) Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 RL S +++ K N + + + SD R+RG QFYGA TGRW+G Q QNL + S+ Sbjct: 1 EIRLQMSKTSVKKYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQLQNLTKHYISDT 59 Query: 339 ILTQTIQALNRGETIA-------DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 L + P L S VR+ A G +L V+D + IEARV+AW Sbjct: 60 ELEIARDLIKEQRFDDLDLLLNVHPQDLLSQLVRTTFTAEEGNELAVSDFSAIEARVIAW 119 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFK 449 A E W++ F IY + ++ FN P++ ++K R GKV ELALGYQGGA K Sbjct: 120 YAKEQWRLDVFNTHGKIYEASASQMFNVPVESITKGDPLRQKGKVSELALGYQGGAGALK 179 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 M A++ + + + + Sbjct: 180 AMG----------------------------------------ALEMGIEENELQGLVDS 199 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR + ++ WK E ++ +R+ + L K + I LPS R L Sbjct: 200 WRNANPNIVNFWKACQEAAI------NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALA 253 Query: 570 YSDV-KGDCSYLNTAT--------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 Y G+ S+ + + + +TYGGKL ENIVQA +RD+L + Sbjct: 254 YPKALVGENSWGSQVVEFMGLDLNRKWSKLKTYGGKLVENIVQATARDLLAISIARLEAL 313 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 G+ IV VHDE++ E P + + ++M K WAKGL L ++G+ + Y K Sbjct: 314 GFKIVGHVHDEVIVEIPRGSNG-LKEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 367 >gi|269976595|ref|ZP_06183580.1| DNA polymerase [Mobiluncus mulieris 28-1] gi|269935396|gb|EEZ91945.1| DNA polymerase [Mobiluncus mulieris 28-1] Length = 352 Score = 356 bits (913), Expect = 9e-96, Method: Composition-based stats. Identities = 118/400 (29%), Positives = 178/400 (44%), Gaps = 63/400 (15%) Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 M++ ++ L + + K+ + R S S++ K + + +D R G LQFYGA+ Sbjct: 1 MAKESVDDALVSA--SGEVKEALELRQELSRSSVAKYRKMIDVTCTDQRAHGLLQFYGAN 58 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL----GLASDCVRSCIIAS 371 RTGRW+G + Q QNLPR + +++ GET+ S +R+ I S Sbjct: 59 RTGRWAGRLVQVQNLPRNYLPDLAQARSLVRDGNGETLEMLYSSVPDTLSQLIRTAFIPS 118 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK--VSKEQR 429 G + +VAD + IEARVLAW+AGE+ + AF NGED+Y T + F P++K V+ E R Sbjct: 119 KGHRFIVADYSAIEARVLAWLAGEETTLAAFKNGEDLYCATASAMFGVPVEKHGVNSELR 178 Query: 430 AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY 489 GK+ LA GY G K M Sbjct: 179 QKGKIAVLACGYNGSVGALKAMG------------------------------------- 201 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A+K L + + AWRA + ++QLW D+ + G ++ + L Sbjct: 202 ---ALKMGLSEDELQPIVDAWRAANPNIVQLWHDVDNAATRAISTGRPVT------LGNL 252 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTAT---------SQLMRERTYGGKLTEN 600 + + I LPS RRL Y + + + + TYGGKL EN Sbjct: 253 GFEKKSGMLFINLPSGRRLAYVKPGIGMNRFGGTSITYWGQGVARKWQKLETYGGKLVEN 312 Query: 601 IVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 IVQA +RD+L E + G+ IV+ +HDE+V + P Sbjct: 313 IVQATARDLLVEAITRIENAGHRIVMHIHDEVVIDEPINS 352 >gi|211731855|gb|ACJ10154.1| DNA polymerase [Bacteriophage APSE-4] Length = 773 Score = 346 bits (887), Expect = 7e-93, Method: Composition-based stats. Identities = 147/393 (37%), Positives = 211/393 (53%), Gaps = 19/393 (4%) Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L+ Sbjct: 3 RLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPALRELL 62 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 RL S ++ K L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR Sbjct: 63 SVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPN 122 Query: 339 ILTQTIQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 + I+AL G D + L S +R CIIA GKKLV++DL+ IE R+LAW+AGE Sbjct: 123 TIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGE 182 Query: 396 DWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 +WK+ AF+ G+D+Y YA+AFN + V+KEQR IGKVMEL LGY GG F T Sbjct: 183 NWKVNAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLT 242 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 A GLDL + ++ +A + + + + +K+ T C+ +K+ W Sbjct: 243 FALAYGLDLDELAEAALPNIPLGVKREAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMW 301 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 R H + W D+ + +Q G R +L +RR K + I LPS R L Y Sbjct: 302 RNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLCY 356 Query: 571 SDVK---GDCSYLNT--ATSQLMRERTYGGKLT 598 + G +Y+ T + + R +TYGGKL Sbjct: 357 PSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389 Score = 121 bits (304), Expect = 3e-25, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSDW 754 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 755 AWDLPLSANGFETYRYRK 772 >gi|211731846|gb|ACJ10149.1| DNA polymerase [Bacteriophage APSE-5] Length = 773 Score = 345 bits (885), Expect = 1e-92, Method: Composition-based stats. Identities = 148/394 (37%), Positives = 213/394 (54%), Gaps = 19/394 (4%) Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 K+L +LTD ++++ Q AL ++ GI L DM TL+ ++ +I ++L Sbjct: 2 KRLSTVTQQLTDNAVQNATQRDALLQHIASAFGITLPDMQASTLQRRINDPDIPPDLREL 61 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + RL S ++ K L ++VS+DGRLRGT QF GASRTGRW+G VFQP NLPR Sbjct: 62 LSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDP 121 Query: 338 EILTQTIQALNRGETI---ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + I+AL G D + L S +R CIIA GKKLV++DL+ IE R+LAW+AG Sbjct: 122 NTIDNGIEALKAGCAELICDDIMQLTSSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAG 181 Query: 395 EDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 E+WK+KAF+ G+D+Y YA+AFN + V+K+QR IGKVMEL LGY GG F Sbjct: 182 ENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFL 241 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 T A GLDL + ++ +A S + + + + +K+ C+ +K+ Sbjct: 242 TFALAYGLDLDELAEAALPHIPPGVKREATSWYQKSVETDKTYGLSEKIF-VNCDSLKRM 300 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 WR H + W D+ + +Q G R +L +RR K + I LPS R L Sbjct: 301 WRNAHPQTVSFWYDIEDAVKQAIQSPGIAFKCR-----KLSVRRDKGWLRICLPSGRSLC 355 Query: 570 YSDVK---GDCSYLNT--ATSQLMRERTYGGKLT 598 Y + G +Y+ T + + R +TYGGKL Sbjct: 356 YPSARIENGQITYMGTNPYSRKWERLKTYGGKLC 389 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 43/78 (55%), Positives = 51/78 (65%) Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI Q+ +RD+L M K GY+IVLTVHDEI+SE PDTP FS L L++ N W Sbjct: 695 CENICQSAARDVLAYSMPPIEKAGYEIVLTVHDEIISEAPDTPQFSAEGLSKLLSFNSHW 754 Query: 658 AKGLPLKAEGYEAKRYRK 675 A LPL A G+E RYRK Sbjct: 755 AWDLPLSANGFETYRYRK 772 >gi|323443494|gb|EGB01110.1| hypothetical protein SAO46_0719 [Staphylococcus aureus O46] Length = 330 Score = 344 bits (881), Expect = 4e-92, Method: Composition-based stats. Identities = 105/337 (31%), Positives = 157/337 (46%), Gaps = 20/337 (5%) Query: 4 LFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP-----SD 56 + IDIE S + K G + Y AE I + AY+ D PV D T+ P Sbjct: 1 MNIDIEIYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGPVSAIDMTKVDNEPYHADYET 60 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D V A N+ FER K +P + WICT V + GLP+SL L Sbjct: 61 FKIALFDPAVKKCAFNANFERTCLAKHFNKSMPPEEWICTMVNSMRIGLPASLDKVGEVL 120 Query: 117 NFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRE 172 K + GK LI F CK + + H + WQ F +YC RDVE Sbjct: 121 RL--QNQKDKAGKNLIRYFSMPCKPTKVNGGRTRNLPEHDPEKWQQFIDYCIRDVEVEMA 178 Query: 173 LFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q + +L + ++TD Sbjct: 179 IANKIKDFPVTTIEQKYWVFDQHINDRGIKLSKSLMLGANVLDKQSKGELLKQAKQITD- 237 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L +L G+D+ ++ + T++ L + T AK ++ RL S +++ Sbjct: 238 -LENPNSPTQLLTWLNKEQGLDIPNLQKKTVQDYLKEA--TGKAKKMLEIRLQMSKTSVK 294 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 K N + + + SD R+RG QFYGA TGRW+G Q Sbjct: 295 KYNKMHDMMCSDERVRGLFQFYGAG-TGRWAGRGVQL 330 >gi|159146203|gb|ABW90565.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 338 bits (866), Expect = 2e-90, Method: Composition-based stats. Identities = 141/367 (38%), Positives = 204/367 (55%), Gaps = 9/367 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A S + ++ + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REATSWYQKSVEKDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 GSISARR 542 G R Sbjct: 362 GIAFKCR 368 >gi|159146211|gb|ABW90569.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 200/367 (54%), Gaps = 9/367 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPLGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 GSISARR 542 G R Sbjct: 362 GIAFKCR 368 >gi|159146205|gb|ABW90566.1| DNA polymerase [Bacteriophage APSE-2] gi|159146207|gb|ABW90567.1| DNA polymerase [Bacteriophage APSE-2] gi|159146209|gb|ABW90568.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 337 bits (864), Expect = 3e-90, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 200/367 (54%), Gaps = 9/367 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+ +L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQNRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+KEQR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKEQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNILPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDALKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 GSISARR 542 G R Sbjct: 362 GIAFKCR 368 >gi|159146215|gb|ABW90571.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 337 bits (864), Expect = 4e-90, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 201/367 (54%), Gaps = 9/367 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPALRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A + + + + +K+ T C+ +K+ WR H + W D+ + +Q Sbjct: 303 REAMRWYQKSVETDKTYGLSEKIFVT-CDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 GSISARR 542 G R Sbjct: 362 GIAFKCR 368 >gi|159146201|gb|ABW90564.1| DNA polymerase [Bacteriophage APSE-2] gi|159146213|gb|ABW90570.1| DNA polymerase [Bacteriophage APSE-2] gi|159146218|gb|ABW90572.1| DNA polymerase [Bacteriophage APSE-2] Length = 370 Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats. Identities = 140/367 (38%), Positives = 202/367 (55%), Gaps = 9/367 (2%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E +LW LDQ IN RG +D++L + E+K+L +LTD ++++ Q AL Sbjct: 3 ETELWQLDQKINRRGMCMDVELAKSALTAVENEQKRLSTVTQQLTDNAVQNATQRDALLQ 62 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 ++ GI L DM TL+ ++ +I ++L+ RL S ++ K L ++VS+DG Sbjct: 63 HIASAFGITLPDMQASTLQRRINDPDIPPDLRELLSVRLQSCTTSTSKYKALLKSVSADG 122 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLA 360 RLRGT QF GASRTGRW+G VFQP NLPR + I+AL G D + L Sbjct: 123 RLRGTKQFCGASRTGRWAGRVFQPDNLPRPTLDPNTIDNGIEALKAGCAELICDDIMQLT 182 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAK 415 S +R CIIA GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y YA+ Sbjct: 183 SSALRGCIIAPPGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYAR 242 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 AFN + V+K+QR IGKVMEL LGY GG F T A GLDL + ++ Sbjct: 243 AFNLLPEDVTKDQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPHIPPGVK 302 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 +A S + + + + +K+ C+ +K+ WR H + W D+ + +Q Sbjct: 303 REATSWYQKSVETDKTYGLSEKIF-VNCDSLKRMWRNAHPQTVSFWYDIEDAVKQAIQSP 361 Query: 536 GSISARR 542 G R Sbjct: 362 GIAFKCR 368 >gi|83311820|ref|YP_422084.1| hypothetical protein amb2721 [Magnetospirillum magneticum AMB-1] gi|82946661|dbj|BAE51525.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 524 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 128/480 (26%), Positives = 213/480 (44%), Gaps = 82/480 (17%) Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + + L +L G++ +++ ++ +L+ +I A+ + R ++ ++ K Sbjct: 91 VTKATKAADLTTWLRD-QGVETEGVAKAAVRQMLAG-DIEGAARQAVEIRAEAAKASTAK 148 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L + + DGR RG YGA TGRW+G + Q QNLPR + L + + Sbjct: 149 LTAMVKCACDDGRARGLHLVYGAG-TGRWAGRLIQLQNLPRGVIKKADLAIPLIIDGDID 207 Query: 352 TI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN--- 404 + PL + S +R C+I + G + +D + IE R+ AW+A E+WKI+AF + Sbjct: 208 LVSMLFGPPLDVISSNLRGCLIPAEGCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDA 267 Query: 405 --GEDIYVTTYAKA-------FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 G D+Y+ K + P+++ S E+ GKV ELALG+ GG F++MA+ Sbjct: 268 GTGRDLYLIGAEKILTLLKVLYAHPLNENSPERTPYGKVPELALGFGGGVGAFQSMAAIY 327 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 G K+ + +K AWR H Sbjct: 328 G---------------------------------------MKVTDEEADQIKVAWREAHP 348 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG 575 V+ LW+++ + + G + + R+ + +VLPS R L Y+ + Sbjct: 349 RVVALWRNMEDAAFNAISNPGRVVS---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRI 405 Query: 576 D------------------CSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMK 615 + +++ N+ T + R TYGG L EN +QAI+RD+L + Sbjct: 406 EKRRPAWNIGQDEIKLKDTITFMAVNSITRKWERCTTYGGSLAENAIQAIARDLLANALL 465 Query: 616 NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY +V+ VHDE ++E SV S+M P+WA GLP+ A G+ RYRK Sbjct: 466 KLEAAGYPVVIHVHDEALAEVRKG-VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 524 >gi|262043421|ref|ZP_06016546.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039247|gb|EEW40393.1| conserved hypothetical protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 328 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 127/333 (38%), Positives = 179/333 (53%), Gaps = 16/333 (4%) Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GED 407 +A + LAS +R CI+A GKKLVV+DL+ IE R+LAW+AGE WK+ AF G D Sbjct: 1 MASVMQLASSALRGCIMAPAGKKLVVSDLSNIEGRMLAWLAGEQWKLDAFRQYDEGTGPD 60 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVK 467 +Y YA+AFN + V+K QR IGKVMEL LG+ GG F T A GLDL++ + Sbjct: 61 LYKLAYARAFNISHEDVTKYQRQIGKVMELGLGFGGGVAAFLTFALVYGLDLEELATAAL 120 Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + +A+ + + + + +++ AC+ +K+ WR H W L Sbjct: 121 PNIPRDVQREAKGWYDESVKRKATYGLSERVF-IACDSLKRLWRRAHPETCDFWYQLERT 179 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYL--NT 582 + + L +RR + I LPS R L Y KG+ +Y+ N+ Sbjct: 180 VRTAIATPA-----KTLYCGYLKVRRDGAWLRIQLPSGRALCYPSPTIEKGNITYMGINS 234 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYF 642 + + R +TYGGKL EN+ QA +RD+L M GY IVLTVHDE++ E PDT + Sbjct: 235 YSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIENAGYSIVLTVHDEVICEAPDTDDY 294 Query: 643 SVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + L SL++ NP WA +PL A G+EA YRK Sbjct: 295 TDAALSSLLSTNPEWAPDIPLNAGGFEAYHYRK 327 >gi|71275469|ref|ZP_00651755.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71900967|ref|ZP_00683080.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71163769|gb|EAO13485.1| DNA-directed DNA polymerase [Xylella fastidiosa Dixon] gi|71729272|gb|EAO31390.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 422 Score = 323 bits (829), Expect = 5e-86, Method: Composition-based stats. Identities = 147/408 (36%), Positives = 199/408 (48%), Gaps = 56/408 (13%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNG 373 TGRW+G +FQP NLPR S+ ++ I A+ G D + L S +RSC+IA Sbjct: 21 TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTH 80 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFA------------------------------ 403 KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 81 KKLVVADLSNIEGRVLAWLAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITL 140 Query: 404 ----------NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+DIY YA +F V+K+QR IGKV ELALGY GG F A+ Sbjct: 141 QRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAA 200 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 +DL+ ++ + E E+ +Q P F + D+ AC++ K+AWR Sbjct: 201 MYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNA 258 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 H + WK L ++ + + M+ + + + LPS R L Y+ Sbjct: 259 HPAIAAFWKALQFAATDAIRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAP 313 Query: 574 K----GDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + G SY+ T T + R TYGGKL ENI QA+SRD+L M GY IVLT Sbjct: 314 RVDEHGALSYMGTHPMTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLT 373 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE+++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 374 VHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|170729635|ref|YP_001775068.1| phage-related DNA polymerase [Xylella fastidiosa M12] gi|167964428|gb|ACA11438.1| phage-related DNA polymerase [Xylella fastidiosa M12] Length = 422 Score = 323 bits (827), Expect = 7e-86, Method: Composition-based stats. Identities = 146/408 (35%), Positives = 198/408 (48%), Gaps = 56/408 (13%) Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNG 373 TGRW+G +FQP NLPR S+ ++ I A+ G D + L S +RSC+IA Sbjct: 21 TGRWAGRLFQPHNLPRPTLSQPVIAVGIDAMKAGCVDVVFDDVMALTSSALRSCLIAPTH 80 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAF------------------------------- 402 KKLVVADL+ IE RVLAW+AGE K+ AF Sbjct: 81 KKLVVADLSNIEGRVLAWLAGETPKLHAFGDFDTCQGVDGTWHSGEAITHGALRGAPITL 140 Query: 403 ---------ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 G+DIY YA +F V+KEQR IGKV ELALGY GG F A+ Sbjct: 141 QRNAEHEPIRQGDDIYKRAYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAA 200 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 +DL+ ++ + E E+ +Q P F + D+ AC++ K+AWR Sbjct: 201 MYHIDLEAMAEQ-AALPPLLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNA 258 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 H + W+ L + + + ++ + + + LPS R L Y+ Sbjct: 259 HPAIAAFWQALQFAATDAIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAP 313 Query: 574 K----GDCSYLNT--ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + G SY+ T T + R TYGGKL ENI QA+SRD+L M GY IVLT Sbjct: 314 RVDEHGALSYMGTHPITRKWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYAIVLT 373 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE+++E D F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 374 VHDEMITEADDNAAFNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 421 >gi|84685270|ref|ZP_01013168.1| DNA polymerase I [Maritimibacter alkaliphilus HTCC2654] gi|84666427|gb|EAQ12899.1| DNA polymerase I [Rhodobacterales bacterium HTCC2654] Length = 932 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 106/564 (18%), Positives = 198/564 (35%), Gaps = 83/564 (14%) Query: 28 AVITLCAYAWDDEPVKLWD--RTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFK 81 A + D D E D+L L+ D ++ + N+ ++ +F Sbjct: 375 ACYIPVGHKVGDGEGLFADDKLAEGQLSLDDVLAALKPVLEDPAILKIFQNAKYDTKIFS 434 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCK 137 + G+++ A +GL + + T + GK+ I F K Sbjct: 435 RH-GLNVAPIDDTMLMSYAMFSGLHNHGMDTLSEHYLGHTPISIKTLLGTGKSAIT-FDK 492 Query: 138 GSI-DSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 I D+ Y A+ ++ WQLF R E +++ L ER L + + Sbjct: 493 VKIEDAVKYAAEDADVTLRLWQLFKPRLHR--EKVTTVYETL------ERPLVPVLAQME 544 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ++D D + ++ AQ+ L+ +I +L + L LF G++ Sbjct: 545 MHGVQVDRDTLSRMSNAFAQKMAGLEAEIHELAGQSF-NVGSPKQLGEILFDKLGLEGGK 603 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTL 309 + T + LA L + KL + L + D GR+ + Sbjct: 604 KGK-TGAYATGADVLEDLAAQHDLPARVLDWRQLSKLKSTYTDALQTHIDPDTGRVHTSY 662 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 GAS TGR + QN+P + +R + Sbjct: 663 LQTGAS-TGRLASTDPNLQNIPIRT------------------------EEGRRIREAFV 697 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A GK LV D + IE R+LA +AG + +AF +GEDI+ T ++ F+ P+D+++ + R Sbjct: 698 APEGKVLVSLDYSQIELRILAHVAGIESMKQAFRDGEDIHAATASEMFDVPLDEMTPDVR 757 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 K + + Y G A+ + + ++ + + D A + Sbjct: 758 RQAKAINFGVIYGISGFGLARNLRIARGEAQGFIDRYFEKYPGIKEYMDDTVAFAKEHGH 817 Query: 486 QDQ--------------------YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLW 521 A+ + G+A +++++A + +++ Sbjct: 818 VATLFGRKIHTPEINAKGPHAGFARRAAINAPIQGSAADIIRRAMIRMPDAISGLPVKML 877 Query: 522 KDLTEGFACVVQEGGSISARRVAN 545 + + V+EGG A V Sbjct: 878 LQVHDELIFEVEEGGVDKAVSVIR 901 >gi|254466222|ref|ZP_05079633.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] gi|206687130|gb|EDZ47612.1| DNA polymerase I superfamily [Rhodobacterales bacterium Y4I] Length = 936 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 105/593 (17%), Positives = 202/593 (34%), Gaps = 88/593 (14%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56 +D ET L + + A +A A+ + + + + MP + Sbjct: 353 AVDTETTGLDEMVVDLVGISLCVEAGEACYIPLAHKAGGDDLFGGEGLSEGQMPLEEAVA 412 Query: 57 -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L D V+ + N ++ + + G+D+ A GL + Sbjct: 413 MLKDVLEDPAVLKIGQNMKYDAKILHRY-GVDVAPIDDTMLMSYALHAGLHGHGMDTLSE 471 Query: 116 LNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEAT 170 + GK+ + D+ PY A+ ++ WQ F ++ T Sbjct: 472 RYLDHTPIPIKPLLGSGKSAVTFDRVPIEDAVPYAAEDADITLRLWQTFKPQLHQERVTT 531 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +++ L ER L + + G ++D D + ++ AQ+ L+ +I +L Sbjct: 532 --VYETL------ERPLVPVLAEMERNGIKVDRDTLSRMSNAFAQKMAGLEAEIHELAGE 583 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF G++ + K + LA + L R + Sbjct: 584 TF-NVGSPAQLGEILFDKMGLEGGKRGKNG-KYSTGADILEDLATEHDLPRRVLDWRQLS 641 Query: 291 KL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ D GR+ + GAS TGR + QN+P + Sbjct: 642 KLKSTYTDALQDHINKDTGRVHTSYAQTGAS-TGRMASTDPNLQNIPVRS---------- 690 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R +A G L+ D + IE R+LA +AG + +AFA Sbjct: 691 --------------EEGRRIREAFVAEEGNVLLSLDYSQIELRILAHMAGIETLQQAFAE 736 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G+DI+ T ++ F P+++++ E R K + + Y G A+ + + Sbjct: 737 GQDIHALTASEMFGVPLEEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRKDAQGFID 796 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIG 500 ++ + + D + A+ + G Sbjct: 797 RYFERFPGIRKYMDSTVEFAKEHGYVQTLFGRKIHTAEINAKGPKAGFAKRAAINAPIQG 856 Query: 501 TACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVAN 545 TA +++++A + + LQ+ +L E +AR V Sbjct: 857 TAADVIRRAMIRMPEAIAHLPARMLLQVHDELLFEVPEAAVEDTIAAAREVME 909 Score = 38.2 bits (87), Expect = 4.1, Method: Composition-based stats. Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 6/118 (5%) Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 A+ + ++ + + ++ Y + + + + Sbjct: 791 AQGFIDRYFERFPGIRKYMDSTVEFAKEHGYVQTLFGRKIHTAEINAKGPKAGFAKRAAI 850 Query: 600 NI-VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 N +Q + D++ M ++L VHDE++ E P+ ++ +M Sbjct: 851 NAPIQGTAADVIRRAMIRMPEAIAHLPARMLLQVHDELLFEVPEAAVEDTIAAAREVM 908 >gi|163733043|ref|ZP_02140487.1| DNA polymerase I [Roseobacter litoralis Och 149] gi|161393578|gb|EDQ17903.1| DNA polymerase I [Roseobacter litoralis Och 149] Length = 933 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 100/514 (19%), Positives = 184/514 (35%), Gaps = 75/514 (14%) Query: 46 DRTEQ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D E L L DE+++ + N ++ +F + +GI + A Sbjct: 396 DLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKIFAQ-VGITVAPIDDTMLMSYAM 454 Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 GL +A + GK+ I D+ PY A+ ++ W Sbjct: 455 HGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLNDAVPYAAEDADVTLRLW 514 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q F R + TR +++ L ER + + + G ++D D + ++ +Q+ Sbjct: 515 QQFKPALHR-AQVTR-VYETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQK 566 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L+++I L + L LF G+ + T + LA + Sbjct: 567 MAALEDEIYTLVGRKF-NVGSPKQLGEILFDEMGLQGGKKGK-TGAYATGADVLEDLATE 624 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L R + KL + L + ++ D GR+ + GAS TGR + QN+ Sbjct: 625 HELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 683 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A GK LV D + IE R+LA Sbjct: 684 PIRS------------------------EEGRRIREAFVAEEGKTLVALDYSQIELRILA 719 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 IA AF +G+DI+ T ++ F+ P+D+++ E R K + + Y G A+ Sbjct: 720 HIADIPALKAAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLAR 779 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488 + S + ++ + T+ D +A + + Sbjct: 780 NLRIPRSEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGYVETLFGRRIHTPNIGAKGPQA 839 Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A+ + GTA +++++A ++ L Sbjct: 840 GFAARAAINAPIQGTAADVIRRAMIRMPAAIVDL 873 >gi|260428784|ref|ZP_05782761.1| DNA polymerase I [Citreicella sp. SE45] gi|260419407|gb|EEX12660.1| DNA polymerase I [Citreicella sp. SE45] Length = 935 Score = 316 bits (809), Expect = 8e-84, Method: Composition-based stats. Identities = 98/536 (18%), Positives = 187/536 (34%), Gaps = 80/536 (14%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D + MP L L D VM + N ++ +F + GI I A Sbjct: 397 DELAEGQMPMQDALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GIGITPIDDTMLMSYA 455 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 GL + S + + GK+ I D+ Y A+ ++ Sbjct: 456 MHGGLHGHGMDTLSERYLSHTPIPIKSLLGSGKSQITFDRVPVEDAVKYAAEDADITLRL 515 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W +F +D +++ L ER L + + G ++D D + ++ +Q Sbjct: 516 WTIFKPQLHQDRVT--RVYEGL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFSQ 567 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + +L+ +I +L + L LF G++ + T + LA Sbjct: 568 KMAQLEAEIHELAGESF-NVGSPKQLGEILFDKMGLEGGKKGK-TGAYATGADVLEDLAT 625 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 + L + KL + L E ++ GR+ + GA+ TGR + QN Sbjct: 626 EHELPARVLDWRQLSKLKSTYTDALQEHINKETGRVHTSYVIAGAN-TGRLASTDPNLQN 684 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A GK +V D + IE R+L Sbjct: 685 IPVRS------------------------EEGRRIREAFVAPEGKTIVSLDYSQIELRIL 720 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A +AG D +AF G+DI+ T ++ FN P+++++ E R K + + Y G A Sbjct: 721 AHMAGIDALKEAFREGQDIHAMTASEMFNVPMEEMTPEIRRQAKAINFGVIYGISGFGLA 780 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + + ++ + T+ D A + + Sbjct: 781 RNLRIPRGEAQAFIDRYFERFPGIKTYMDETVAFAKEHKRVETLFGRIIHTPEISASGPR 840 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++++A + ++ + + V++G Sbjct: 841 AGFAKRAAINAPIQGTAADIIRRAMVRMPGAIAEIPAKMLLQVHDELIFEVEQGAE 896 >gi|83311029|ref|YP_421293.1| hypothetical protein amb1930 [Magnetospirillum magneticum AMB-1] gi|82945870|dbj|BAE50734.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 516 Score = 316 bits (809), Expect = 9e-84, Method: Composition-based stats. Identities = 125/455 (27%), Positives = 204/455 (44%), Gaps = 81/455 (17%) Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 ++ ++ +L+ +I A+ + R ++ ++ KL + + DGR RG YGA Sbjct: 107 TKAAVRQMLAG-DIEGAARQAVEIRAEAAKASTAKLTAMVKCACDDGRARGLHLVYGAG- 164 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI----ADPLGLASDCVRSCIIASN 372 TGRW+G + Q QNLPR + L + + + PL + S +R C+I + Sbjct: 165 TGRWAGRLIQLQNLPRGSVKKADLAIPLIIDGDIDLVSMLFGPPLDVISSNLRGCLIPAE 224 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKA-------FNTP 420 G + +D + IE R+ AW+A E+WKI+AF + G D+Y+ K + P Sbjct: 225 GCDFIQSDFSNIEGRITAWLANEEWKIQAFRDFDAGTGRDLYLIGAEKILTLLKVPYAHP 284 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 +++ S+E+ GKV ELALG+ GG F++MA+ G Sbjct: 285 LNENSQERTPYGKVPELALGFGGGVGAFQSMAAIYG------------------------ 320 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 K+ + +K AWR H V+ LW+++ + + G + + Sbjct: 321 ---------------MKVTDEEADQIKVAWREAHPRVVALWRNMEDAAFNAISNPGRVVS 365 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD------------------CSYL-- 580 R+ + +VLPS R L Y+ + + +++ Sbjct: 366 ---TAGGRIKYVVKGGFLWMVLPSGRPLAYAHPRIEKRRPAWNIGQDEIKLKDTITFMSV 422 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTP 640 N+ T + R TYGG L EN +QAI+RD+L + GY +V+ VHDE ++E Sbjct: 423 NSITRKWERCTTYGGSLAENAIQAIARDLLANALLKLEAAGYPVVIHVHDEALAEIRKG- 481 Query: 641 YFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 SV S+M P+WA GLP+ A G+ RYRK Sbjct: 482 VGSVDEFKSIMCDTPAWAAGLPVAAAGWRGSRYRK 516 >gi|86137039|ref|ZP_01055617.1| DNA polymerase I [Roseobacter sp. MED193] gi|85826363|gb|EAQ46560.1| DNA polymerase I [Roseobacter sp. MED193] Length = 935 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 97/539 (17%), Positives = 179/539 (33%), Gaps = 81/539 (15%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 L L D V+ + N ++ + + GID+ A G + Sbjct: 407 EQALEMLKPMLEDPAVLKIGQNMKYDAKILHRY-GIDVAPIDDTMLMSYALHAGEHNHGM 465 Query: 111 NACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFG-EYCK 164 + + GK+ I D+ PY A+ ++ WQ F E + Sbjct: 466 DILSERYLDHKPIPIKPLLGTGKSAITFDRVPIADAVPYAAEDADITLRLWQHFKPELHQ 525 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 R V E ER L + + G ++D D + ++ AQ+ L+++I Sbjct: 526 RQVTVVYETL---------ERPLVPVLAEMERNGIKVDRDTLSRMSNAFAQKMAALEDEI 576 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L + L LF + + T + LA + L L Sbjct: 577 HALAGQPF-NVGSPKQLGEILFDKLELPGGKKGK-TGAYATGADILEDLATEHALPALVL 634 Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + ++ D GR+ + GA+ TGR + QN+P + Sbjct: 635 DWRQLSKLKSTYTDALQDHINPDTGRVHTSYIQTGAN-TGRMASSDPNLQNIPVRS---- 689 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + G L+ D + IE R+LA +AG D Sbjct: 690 --------------------EEGRRIREAFVPEQGNVLLSLDYSQIELRILAHVAGIDAL 729 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 AFA G+DI+ T ++ F+ P+++++ + R K + + Y G A+ + + Sbjct: 730 KAAFAAGQDIHAMTASEMFDVPMEEMTADIRRQAKAINFGVIYGISGFGLARNLRIPRAE 789 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAV 494 + ++ + + D + A+ Sbjct: 790 AQGFIDRYFERFPGIRAYMDRTVEFAKEHGYVQTLFGRKIHTPEIAAKGPRAGFAKRAAI 849 Query: 495 KDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA +++++A + LQ+ +L E +ARRV Sbjct: 850 NAPIQGTAADVIRRAMVKMPPAIAHLPARMLLQVHDELLFEVPEAAVEETIETARRVME 908 >gi|325662094|ref|ZP_08150713.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471757|gb|EGC74976.1| hypothetical protein HMPREF0490_01451 [Lachnospiraceae bacterium 4_1_37FAA] Length = 341 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 149/345 (43%), Gaps = 35/345 (10%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ++ ID+ET S + K GV+ YAE I L A + D V ++D +P ++L Sbjct: 4 IKEMSIDLETYSDVDIKKSGVYKYAESENFEILLFAVSIDGGDVIVYDLACGDVLPDEIL 63 Query: 59 QYLRDETVMCVAHNSLFERILFKKTL------------------GIDIPSKRWICTSVLA 100 + + V+ A N+ FERI + G + W CT + + Sbjct: 64 DAIVSDDVIKWAFNASFERICLSYWMKRNYPDRFCSYSIPEDTVGNYLDPASWRCTMIWS 123 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAW 156 GLP SL+ L + KM+EGK LI F CK + + H + W Sbjct: 124 AYMGLPLSLEGVGAVLGLKDQ--KMKEGKDLIRYFCVPCKPTKSNGGRTRNFPMHAPEKW 181 Query: 157 QLFGEYCKRDVEATRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 +F Y KRDVE + ++L P+ D + +LLDQ INDRG +DL +V Sbjct: 182 TVFKSYNKRDVEVEIGIKEKLHKFPVPDFVWEEYLLDQEINDRGILVDLQMVENAIAFDE 241 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + + ++++ LTD I + ++ +L GI++ + + + ++ + + Sbjct: 242 RSKATITDEMLGLTD--IDNPNSVSQMKSWLSD-QGIEVESLGKKVVAEMIK--DAPEDL 296 Query: 275 KDLILNRLASSGSAILKLN--TLSEAVSSDGRLRGTLQFYGASRT 317 ++ R + S++ ++ L +S+ T+ + T Sbjct: 297 AQVLSLRQQLAKSSVNRVGEIPLRREISTSHTTVRTVPYTAVQST 341 >gi|163742064|ref|ZP_02149453.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] gi|161384785|gb|EDQ09165.1| DNA polymerase I [Phaeobacter gallaeciensis 2.10] Length = 937 Score = 313 bits (801), Expect = 7e-83, Method: Composition-based stats. Identities = 98/549 (17%), Positives = 189/549 (34%), Gaps = 83/549 (15%) Query: 46 DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D + D L L+ D +++ + N ++ +F + GID+ A Sbjct: 400 DLADGQMPLQDALNLLKPVLEDNSILKIGQNMKYDAKIFAR-RGIDVAPIDDTMLMSYAM 458 Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 G + + + GK+ I D+ Y A+ ++ W Sbjct: 459 HAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYAAEDADITLRLW 518 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QLF + T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 519 QLFKPQLHQSGVTT--VYETL------ERPLVPVLARMEREGIKVDRDTLSRMSNAFAQK 570 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L+ +I +L + L LF G++ + T + LA + Sbjct: 571 MAGLEAEIHELAGQNF-NVGSPKQLGEILFDKLGMEGGKKGK-TGAYATGADILEDLATE 628 Query: 277 LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L L + KL + L + ++ GR+ + GA+ TGR + QN+ Sbjct: 629 HALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPNLQNI 687 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R + G L+ D + IE R+LA Sbjct: 688 PIRS------------------------EEGRRIREAFVPEEGNVLLALDYSQIELRILA 723 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 +AG D +AFA G+DI+ T ++ FN P+++++ + R K + + Y G A+ Sbjct: 724 HVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLAR 783 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488 + + + ++ + + D A + Sbjct: 784 NLRIPRAEAQGFIDRYFERFPGIRRYMDETVAFAKEHGHVQTLFGRKIHTPEISAKGPRA 843 Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSI 538 A+ + GTA +++++A + LQ+ +L E Sbjct: 844 GFAKRAAINAPIQGTAADVIRRAMIRMPAAIAHLPARMLLQVHDELLFEVPEAAVEDTIE 903 Query: 539 SARRVANVP 547 +AR+V Sbjct: 904 TARQVMETA 912 >gi|114764066|ref|ZP_01443305.1| DNA polymerase I [Pelagibaca bermudensis HTCC2601] gi|114543424|gb|EAU46439.1| DNA polymerase I [Roseovarius sp. HTCC2601] Length = 935 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 108/548 (19%), Positives = 194/548 (35%), Gaps = 85/548 (15%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D E MP L L D VM + N ++ +F + G+ I A Sbjct: 398 DLAEG-QMPMQAALDLLKPLLEDPAVMKIGQNMKYDAKIFARY-GVRIAPIDDTMLMSYA 455 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEE---GKALIARFCKGSI-DSPPYDCTRAN-HVQA 155 GL +A S ++E + F + I D+ Y A+ ++ Sbjct: 456 MNAGLHGHGMDALSERYLSHTPIPIKELLGSGKKMKTFDQVPIEDAVKYAAEDADITLRL 515 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W L R+ TR +++ + ER L + + G ++D D + ++ +Q Sbjct: 516 WTLLKPQLHRN-HVTR-VYETM------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFSQ 567 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + L+ +I +L + L LF G++ + T + LA Sbjct: 568 KMAALEAEIHELAGESF-NVGSPKQLGEILFDKMGLEGGKKGK-TGAYATGADVLEDLAT 625 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + L + KL + L E ++ D GR+ + GA+ TGR S QN Sbjct: 626 EHELPARVLDWRQLSKLKSTYTDALQEHINKDTGRVHTSYVISGAN-TGRLSSTDPNLQN 684 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A GK +V D + IE R+L Sbjct: 685 IPVRS------------------------EEGRRIREAFVAPEGKTIVALDYSQIELRIL 720 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A +A D +AF +G+DI+ T ++ FN P+D+++ E R K + + Y G A Sbjct: 721 AHMAEIDALKQAFRDGQDIHAMTASEMFNVPMDEMTSEIRRQAKAINFGVIYGISGFGLA 780 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + S + ++ + T+ D A + + Sbjct: 781 RNLRIPRSEAQGFIDRYFERFPGIRTYMDDTVAFAKEHKRVETLFGRVIHTPEIAAKGPR 840 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++++A + LQ+ +L +E Sbjct: 841 AGFAKRAAINAPIQGTAADIIRRAMIRMPDAIEKLPATMLLQVHDELIFEVEQGAEEALI 900 Query: 538 ISARRVAN 545 +AR V Sbjct: 901 SAARTVME 908 >gi|110677750|ref|YP_680757.1| DNA polymerase I [Roseobacter denitrificans OCh 114] gi|109453866|gb|ABG30071.1| DNA polymerase I [Roseobacter denitrificans OCh 114] Length = 933 Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats. Identities = 96/514 (18%), Positives = 183/514 (35%), Gaps = 75/514 (14%) Query: 46 DRTEQ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D E L L DE+++ + N ++ +F + +GI + A Sbjct: 396 DLAEGQMPLETALEMLKPVLEDESILKIGQNMKYDAKVFAQ-VGITVAPIDDTMLMSYAM 454 Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 GL +A + GK+ I ++ PY A+ ++ W Sbjct: 455 HGGLHGHGMDALSERYLGHTPLPIKPLLGSGKSAITFDKVPLSEAVPYAAEDADVTLRLW 514 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q F R + T ++++ L ER + + + G ++D D + ++ +Q+ Sbjct: 515 QQFKPALHR-AQVT-KVYETL------ERPMVAVLADMERAGIKVDRDTLSRMSNAFSQK 566 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L++++ L + L LF G+ + T + LA + Sbjct: 567 MAALEDEVYTLVGRKF-NVGSPKQLGEILFDEMGLQGGKKGK-TGAYATGADVLEDLATE 624 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L R + KL + L + ++ D GR+ + GAS TGR + QN+ Sbjct: 625 HELPRRILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNI 683 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A GK LV D + IE R+LA Sbjct: 684 PIRS------------------------EEGRRIREAFVAEEGKTLVALDYSQIELRILA 719 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 IA AF +G+DI+ T ++ F+ P+D+++ E R K + + Y G A+ Sbjct: 720 HIADIPALKTAFDDGQDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLAR 779 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488 + S + ++ + + D +A + + Sbjct: 780 NLRIPRSEAQGFIDRYFERFPGIRAYMDDTKAFAKEHGYVETLFGRRIHTPNIGAKGPQA 839 Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A+ + GTA +++++A + +L Sbjct: 840 GFAARAAINAPIQGTAADVIRRAMIRMPAAIAEL 873 >gi|259417724|ref|ZP_05741643.1| DNA polymerase I [Silicibacter sp. TrichCH4B] gi|259346630|gb|EEW58444.1| DNA polymerase I [Silicibacter sp. TrichCH4B] Length = 935 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 97/550 (17%), Positives = 188/550 (34%), Gaps = 82/550 (14%) Query: 46 DRTEQ----SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D E L L D+ ++ + N ++ +F + GIDI A Sbjct: 398 DLAEGQMPLETALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDITPIDDTMLLSYAL 456 Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 G+ + + + GK+ I D+ PY A+ ++ W Sbjct: 457 HGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVPIDDATPYAAEDADITLRLW 516 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q F + T +++ L ER L + + G ++D D + ++ +Q+ Sbjct: 517 QQFKPQLHQKQVTT--VYETL------ERPLVPVLAQMEQNGIKVDRDTLSRMSNAFSQK 568 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L+ +I +L + L LF + + T + LA + Sbjct: 569 MAALEAEIHELAGESF-NVGSPKQLGEILFDKLSLPGGKKGK-TGAYATGADILEDLATE 626 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L + KL + L E + GR+ + GA+ TGR + QN+ Sbjct: 627 HELPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDPNLQNI 685 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G L+ D + IE R+LA Sbjct: 686 PVRS------------------------EEGRRIREAFVAEEGNVLLSLDYSQIELRILA 721 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 +AG D +AFA+G DI+ T ++ F+ P+++++ E R K + + Y G A+ Sbjct: 722 HVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPEIRRKAKAINFGVIYGISGFGLAR 781 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQY---------------- 489 + + ++ + + D + H ++Q + Sbjct: 782 NLRIPRGEAQGFIDRYFERFPGIRQYMDDTVNFAKDHGYVQTLFGRKIHTPEIAAKGPRA 841 Query: 490 ---PEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARR 542 A+ + GTA +++++A + ++ + + V E Sbjct: 842 SFAKRAAINAPIQGTAADVIRRAMVRMPDAIAHLPARMLLQVHDELLFEVPED---HVDE 898 Query: 543 VANVPRLVMR 552 +V R +M Sbjct: 899 TISVAREIME 908 Score = 38.9 bits (89), Expect = 2.6, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + D++ M ++L VHDE++ E P+ ++ +M Sbjct: 853 IQGTAADVIRRAMVRMPDAIAHLPARMLLQVHDELLFEVPEDHVDETISVAREIM 907 >gi|163739304|ref|ZP_02146715.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] gi|161387374|gb|EDQ11732.1| DNA polymerase I [Phaeobacter gallaeciensis BS107] Length = 937 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 97/549 (17%), Positives = 188/549 (34%), Gaps = 83/549 (15%) Query: 46 DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D + D L L+ D +++ + N ++ +F + GID+ A Sbjct: 400 DLADGQMPLQDALDLLKPVLEDNSILKIGQNMKYDAKIFAR-RGIDVAPIDDTMLMSYAM 458 Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 G + + + GK+ I D+ Y A+ ++ W Sbjct: 459 HAGQHGHGMDTLSERYLNHTPIPIKPLLGTGKSAITFDRVPIDDAVAYAAEDADITLRLW 518 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QLF + T +++ L ER L + + G ++D D + ++ AQ+ Sbjct: 519 QLFKPQLHQSGVTT--VYETL------ERPLVPVLARMEREGIKVDRDTLSRMSNAFAQK 570 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L+ +I +L + L LF G++ + T + LA + Sbjct: 571 MAGLEAEIHELAGQNF-NVGSPKQLGEILFDKLGMEGGKKGK-TGAYATGADILEDLATE 628 Query: 277 LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L L + KL + L + ++ GR+ + GA+ TGR + QN+ Sbjct: 629 HALPGLVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYVQTGAN-TGRLASTDPNLQNI 687 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R + G L+ D + IE R+LA Sbjct: 688 PIRS------------------------EEGRRIREAFVPEEGNVLLALDYSQIELRILA 723 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 +AG D +AFA G+DI+ T ++ FN P+++++ + R K + + Y G A+ Sbjct: 724 HVAGIDTLKQAFAEGQDIHALTASEMFNVPLEEMTSDIRRQAKAINFGVIYGISGFGLAR 783 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488 + + + ++ + + D A + Sbjct: 784 NLRIPRAEAQGFIDRYFERFPGIRRYMDETVAFAKEHGHVQTLFGRKIHTPEISAKGPRA 843 Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSI 538 A+ + GTA +++++A + LQ+ +L E Sbjct: 844 GFAKRAAINAPIQGTAADVIRRAMIRMPAAIAHLPARMLLQVHDELLFEVPEAAVEDTIE 903 Query: 539 SARRVANVP 547 +A +V Sbjct: 904 TASQVMETA 912 >gi|83855330|ref|ZP_00948860.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] gi|83843173|gb|EAP82340.1| DNA polymerase I [Sulfitobacter sp. NAS-14.1] Length = 932 Score = 310 bits (793), Expect = 6e-82, Method: Composition-based stats. Identities = 105/548 (19%), Positives = 196/548 (35%), Gaps = 85/548 (15%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D E +P++ L L D +++ + N ++ +F + LGI++ A Sbjct: 395 DLAEG-QIPTEEALRLLTPMLEDPSILKIGQNMKYDSKIFAQ-LGINVAPIDDTMLLSYA 452 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 GL + S + GK+ I D+ Y A+ ++ Sbjct: 453 MHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADAVKYAAEDADITLRL 512 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQLF R V T ++++ L ER L + + G ++D D + ++ AQ Sbjct: 513 WQLFKPQLHR-VGVT-KVYETL------ERPLVPVLAAMERSGVKVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + L++DI +L + L LF G++ + T + LA Sbjct: 565 KMAGLEDDIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGK-TGAYATGADVLEDLAT 622 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + L + KL + L + ++ D GR+ + GAS TGR + QN Sbjct: 623 EHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQN 681 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A GK LV D + IE R+L Sbjct: 682 IPIRS------------------------EEGRRIREAFVAEPGKALVALDYSQIELRIL 717 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A IA +AF +G DI+ T ++ F P+D+++ + R K + + Y G A Sbjct: 718 AHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLA 777 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + + + ++ + T+ + +A + Sbjct: 778 RNLRIPRAEAQGFIDRYFERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEISAKGPR 837 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++++A + LQ+ +L ++ Sbjct: 838 AGFAQRAAINAPIQGTAADVIRRAMIRMPDAIKDLPATMLLQVHDELLFEVEKGAEDDLI 897 Query: 538 ISARRVAN 545 +AR V Sbjct: 898 AAARHVME 905 >gi|37626129|gb|AAQ96505.1| putative DNA polymerase [Vibrio phage VP16T] Length = 714 Score = 310 bits (793), Expect = 7e-82, Method: Composition-based stats. Identities = 148/701 (21%), Positives = 255/701 (36%), Gaps = 156/701 (22%) Query: 5 FIDIETRSP---------------------QPLPKVGVWAYAEQA--VITLCAYAWDDE- 40 D ET S + VG YAE I Y D Sbjct: 36 SFDFETYSEAGFVINPETGKVHTAAKTGNKNGIALVGTPVYAEHPSTEILCLYYDLKDGK 95 Query: 41 ------PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-----GIDIP 89 P P+DL++++ + + A N FE ++ L + Sbjct: 96 GRRAYIP--------GGPKPTDLIEHIANGGPI-AAWNITFEFWIWNMVLAKREGWPWLQ 146 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG---SIDSPPYD 146 ++ C AR LP SL A AL K ++GK LI + C+ + P Sbjct: 147 LEQCYCDMAKARRFSLPGSLDAAAQALK---TSPKDKKGKQLINKLCRPVSATKARPLPR 203 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 T Q + YC +DV++ + ++ ER+ WL DQ IN RG ++D++ + Sbjct: 204 WTLYTAPQDYSDLYAYCDQDVKSEDHVSALTPDMTPSERETWLADQRINARGVQVDVESL 263 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +++ Q ++ ++ +T+G + S + + +L G + +++ ++ L Sbjct: 264 DNALDIVDQTTRRFTMELAAITNGAVGSVSEVAKMTDFLAG-LGCRMHNLTADSVSEALE 322 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 ++ A+ ++ R A +G+ + KL +L +SSDGRLR F+GA TGRWS Q Sbjct: 323 RDDLNPTARRVLEIREALAGANVKKLFSLKAQISSDGRLRNQYNFFGAG-TGRWSAGGVQ 381 Query: 327 PQNLPRQERSEEILTQTIQALNRGETI--------------------------------- 353 QNL + + + + + TI Sbjct: 382 LQNLTSKGPKSKTCNGCGRIVGKACTIEVMGATGLCPECGGNEWTDNKDWTVDAVRWALK 441 Query: 354 --------------ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 DP+ L S C+R IA+ GKK V D + IEA VLA +A +W++ Sbjct: 442 DLTHRNLDLIIAIWGDPITLLSGCLRGLFIAAPGKKFVCCDFSAIEAVVLAALARCEWRL 501 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV----------SKEQRAIGKVMELALGYQGGAKVFK 449 + F IY + +K P +++ ++++GKV ELA GY G +K Sbjct: 502 EVFRTHGKIYEMSASKISGVPFEEMMAYKEQNKHDHPLRKSLGKVAELASGYGGWLGAWK 561 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + F D ++ + L +D PE + + Sbjct: 562 AFGAEAH---------------FADDDEMKKAILGWRDASPE--------------IVEF 592 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 W +++ K E F +I + + V + H ++ LPS R L Sbjct: 593 WGGQYRRDPFTRKWTKEYFGLEGAAIMAILNPGKCYAVHDITYAVHDDVLYCRLPSGRFL 652 Query: 569 VYSDVKG-----------DCSYLNTATS------QLMRERT 592 Y + +++ T+ +R T Sbjct: 653 QYHQPRLVESDSWKGPEYQITFMGYNTNSQKGPVGWVRMDT 693 >gi|149912695|ref|ZP_01901229.1| DNA polymerase I [Roseobacter sp. AzwK-3b] gi|149813101|gb|EDM72927.1| DNA polymerase I [Roseobacter sp. AzwK-3b] Length = 938 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 94/520 (18%), Positives = 184/520 (35%), Gaps = 75/520 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D+ ++ + N ++ +F + GI + A G+ + Sbjct: 416 LKPMLEDDAILKIGQNMKYDAKIFARH-GIRVAPFDDTMLMSYALNAGIHGHGMDTLSER 474 Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171 S ++E GK+ + D+ Y A+ ++ W +F R E Sbjct: 475 YLSHQPIPIKELLGTGKSAVTFDRVPVADAVKYAAEDADITLRLWHVFKPQLHR--EKVT 532 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +++ L ER L + + G ++D + + ++ AQ+ +L+E+I +L Sbjct: 533 TVYETL------ERPLSPVLAQMERNGIKVDRETLSRMSGKFAQKMAQLEEEIHELAGRK 586 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF G+D + T + LA + L A+ K Sbjct: 587 F-NVGSPKQLGEILFDEMGLDGGKRGK-TGAYATGADVLEDLATEHDLPARVLDWRALSK 644 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + + D GR+ + GA+ TGR + QN+P + Sbjct: 645 LKSTYTDALQDHIDPDTGRVHTSYVQTGAT-TGRLASTDPNLQNIPVRS----------- 692 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G LV D + IE R+LA IA D +AF +G Sbjct: 693 -------------EEGRRIREAFVAEPGNVLVSLDYSQIELRILAHIADIDALRQAFRDG 739 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 +DI+ T ++ F+ P+D+++ E R K + + Y G A+ + + + Sbjct: 740 QDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEAQGFIDR 799 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGT 501 + + T+ D + A+ + GT Sbjct: 800 YFERFPGIKTYMDKTVDFAKEHGFVQTLFNRKIHTPEISAKGPRAGFARRAAINAPIQGT 859 Query: 502 ACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGS 537 A +++++A + ++ + + V+ G + Sbjct: 860 AADIIRRAMIRMPAAIEGMPAKMLLQVHDELIFEVEAGAA 899 >gi|84501404|ref|ZP_00999609.1| DNA polymerase I [Oceanicola batsensis HTCC2597] gi|84390695|gb|EAQ03183.1| DNA polymerase I [Oceanicola batsensis HTCC2597] Length = 935 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 101/523 (19%), Positives = 178/523 (34%), Gaps = 93/523 (17%) Query: 46 DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D E ++ L+ L+ DE ++ + N ++ + K+ GID+ A Sbjct: 398 DLAEGQMAEAEALEMLKPVLEDEAILKIGQNMKYDAKILKRC-GIDVAPCDDTMLISYAL 456 Query: 102 TNGLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 GL +A S ++E GKA+I F K ID TR Sbjct: 457 NAGLHQHGMDALADRYLSHTCIPIKELLGTGKAMIT-FDKVPID----KATR-------- 503 Query: 158 LFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 Y D + T L++ L P ER L + + G ++D D + Sbjct: 504 ----YAAEDADVTLRLWQVLKPQLHAKKVTTVYETLERPLAPVLAKMEMHGIKVDRDTLS 559 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ AQ+ L+ +I +L + L LF G++ + T Sbjct: 560 RMSSAFAQKMGALEAEIHELAGERF-NVGSPKQLGEILFDKMGMEGGKKGK-TGAYATGA 617 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + LA L + KL ++L + GR+ + Q GA+ TGR + Sbjct: 618 DVLEDLATLHELPARVLDWRQLSKLKSTYTDSLQTHIHPETGRVHTSYQQTGAN-TGRLA 676 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R IA GK L+ D Sbjct: 677 STDPNLQNIPVRS------------------------EEGRRIREAFIAEEGKVLLSLDY 712 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA IA +AF G+DI+ T ++ F P+++++ E R K + + Y Sbjct: 713 SQIELRILAHIADIPALKQAFDEGQDIHAATASEMFGVPMEEMTPEIRRQAKAINFGVIY 772 Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------- 488 G A+ + + + ++ + + Sbjct: 773 GISGFGLARNLRIPRAEAQGFIDRYFERFPGIKDYMAETTEFGKKNGYVQTLFGRRIHTP 832 Query: 489 -----------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A+ + GTA +++++A +L L Sbjct: 833 EIDAKGPRAGFARRAAINAPIQGTAADIIRRAMIRMPDAILGL 875 >gi|254487826|ref|ZP_05101031.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] gi|214044695|gb|EEB85333.1| DNA polymerase I superfamily protein [Roseobacter sp. GAI101] Length = 931 Score = 308 bits (790), Expect = 1e-81, Method: Composition-based stats. Identities = 99/536 (18%), Positives = 191/536 (35%), Gaps = 81/536 (15%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D E +P++ L L D ++M + N ++ +F + LGI + Sbjct: 394 DLAEG-QIPTEEALRMLTPMLEDPSIMKIGQNMKYDSKIFAQ-LGITVAPIDDTMLLSYV 451 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 GL +A + GK+ + + PY A+ ++ Sbjct: 452 MHAGLHGHGMDALSERYLGHTPIPIKPLLGSGKSAVTFDKVPLAQAVPYAAEDADITLRL 511 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQLF R ++ T ++++ L ER L + + G ++D D + ++ AQ Sbjct: 512 WQLFKPQLHR-IQVT-KVYETL------ERPLVPVLAAMERSGIKVDRDTLSRMSNAFAQ 563 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + L+++I +L + L LF G++ + T + LA Sbjct: 564 KMAGLEDEIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGK-TGAYATGADVLEDLAT 621 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + L + KL + L + ++ D GR+ + GAS TGR + QN Sbjct: 622 EHDLPGRILDWRQLSKLKSTYTDALQDHINKDTGRVHTSYSIAGAS-TGRLASTDPNLQN 680 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A GK LV D + IE R+L Sbjct: 681 IPIRS------------------------EEGRRIREAFVAEEGKVLVALDYSQIELRIL 716 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A IA +AF +G DI+ T ++ F P+D+++ + R K + + Y G A Sbjct: 717 AHIADIPELKQAFKDGIDIHALTASEMFGVPLDEMTPDIRRQAKAINFGVIYGISGFGLA 776 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + + + ++ + T+ D +A + Sbjct: 777 RNLRIPRAEAQGFIDRYFERFPGIRTYMDNTKAFAKEHGFVQTLFGRKINTPEIGAKGPR 836 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL----WKDLTEGFACVVQEGGS 537 A+ + GTA +++++A + + + + V++G Sbjct: 837 AGFAQRAAINAPIQGTAADVIRRAMIRMPAAIKDIPATMLLQVHDELLFEVEKGAE 892 >gi|126738358|ref|ZP_01754079.1| DNA polymerase I [Roseobacter sp. SK209-2-6] gi|126720855|gb|EBA17560.1| DNA polymerase I [Roseobacter sp. SK209-2-6] Length = 936 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 93/546 (17%), Positives = 180/546 (32%), Gaps = 83/546 (15%) Query: 47 RTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 E MP D L L D ++ + N ++ + + G D+ A Sbjct: 400 LAEG-QMPLDQALEMLKPVLEDPAILKIGQNMKYDAKILHRY-GADVAPIDDTMLMSYAL 457 Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 GL + + GK+ I ++ PY A+ ++ W Sbjct: 458 HAGLHGHGMDTLSERYLDHKPIPIKPLLGSGKSAITFDRVPIANAVPYAAEDADITLRLW 517 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QLF + E +++ L ER L + + G ++D +++ ++ AQ+ Sbjct: 518 QLFKPQLHQ--EQVTTVYETL------ERPLVPVLAQMERHGIKVDREVLSRMSNAFAQK 569 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L+ +I ++ + L LF + + T + LA + Sbjct: 570 MAGLESEIHEMAGADF-NVGSPKQLGEILFDKLELPGGKKGK-TGAYATGADILEDLATE 627 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L + KL + L + ++++ R T + TGR + QN+P Sbjct: 628 HALPGLVLDWRQLSKLKSTYTDALQDHINAETRRVHTSYAQTGASTGRMASTDPNLQNIP 687 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R +A G L+ D + IE R+LA Sbjct: 688 VRT------------------------EEGRRIREAFVAGEGNVLLSLDYSQIELRILAH 723 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 +AG D +AFA G+DI+ T ++ F+ P+ +++ + R K + + Y G A+ Sbjct: 724 MAGIDALKQAFAEGQDIHAMTASEMFDVPMAEMTPDIRRQAKAINFGVIYGISGFGLARN 783 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------- 488 + + ++ Q + D + Sbjct: 784 LRIPRKEAQDFIDRYFQRFPGIRRYMDSTVEFAKEHGFVQTLFGRKIHTAEINAKGPRAG 843 Query: 489 -YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSIS 539 A+ + GTA +++++A + LQ+ +L E Sbjct: 844 FAKRAAINAPIQGTAADVIRRAMIRMPGAIAHLPARMLLQVHDELLFEVPEAAVEETIAV 903 Query: 540 ARRVAN 545 A+ V Sbjct: 904 AKEVME 909 >gi|83941853|ref|ZP_00954315.1| DNA polymerase I [Sulfitobacter sp. EE-36] gi|83847673|gb|EAP85548.1| DNA polymerase I [Sulfitobacter sp. EE-36] Length = 932 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 104/548 (18%), Positives = 197/548 (35%), Gaps = 85/548 (15%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D E +P++ L L D +++ + N ++ +F + LGI++ A Sbjct: 395 DLAEG-QIPTEEALRLLTPMLEDHSILKIGQNMKYDSKIFAQ-LGINVAPIDDTMLLSYA 452 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 GL + S + GK+ I D+ Y A+ ++ Sbjct: 453 MHAGLHGHGMDTLSERYLSHTPIPIKPLLGTGKSAITFDKVPLADAVKYAAEDADITLRL 512 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 WQLF R V T ++++ L ER L + + G ++D D + ++ AQ Sbjct: 513 WQLFKPQLHR-VGVT-KVYETL------ERPLVSVLAAMERSGVKVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + L+++I +L + L LF G++ + T + LA Sbjct: 565 KMAGLEDEIYELAGRKF-NVGSPKQLGEILFDEMGLEGGKKGK-TGAYATGADVLEDLAT 622 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + L + KL + L + ++ D GR+ + GAS TGR + QN Sbjct: 623 EHDLPARVLDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQN 681 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A GK LV D + IE R+L Sbjct: 682 IPIRS------------------------EEGRRIREAFVAEPGKALVALDYSQIELRIL 717 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A IA +AF +G DI+ T ++ F P+D+++ + R K + + Y G A Sbjct: 718 AHIANIPELKQAFQDGIDIHALTASEMFGVPLDEMTSDVRRQAKAINFGVIYGISGFGLA 777 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + + + ++ + T+ + +A + Sbjct: 778 RNLRIPRAEAQGFIDRYFERFPGIRTYMNDTKAFAKEHGFVQTLFGRKIHTPEINAKGPR 837 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++++A + LQ+ +L ++ Sbjct: 838 AGFAQRAAINAPIQGTAADVIRRAMIRMPHAIKDLPATMLLQVHDELLFEVEKGAEDDLI 897 Query: 538 ISARRVAN 545 +AR+V Sbjct: 898 AAARQVME 905 >gi|159045449|ref|YP_001534243.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] gi|157913209|gb|ABV94642.1| DNA polymerase I [Dinoroseobacter shibae DFL 12] Length = 932 Score = 307 bits (787), Expect = 4e-81, Method: Composition-based stats. Identities = 110/608 (18%), Positives = 194/608 (31%), Gaps = 115/608 (18%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56 +D ET L V + +A A+ D D A ++ Sbjct: 346 AVDTETTGLNEMRADLVGVSLCVDPGRAAYLPLAHK-DGGGAD--DLFGGEAKLAEGQLD 402 Query: 57 -------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 L L D V+ + N ++ + + GI + A GL Sbjct: 403 FETALGMLKPVLEDPAVLKIGQNMKYDAKILARN-GITVAPIDDTMLLSYALHAGLHGHG 461 Query: 110 KNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A T + GK+ I F I + +Y Sbjct: 462 MDALSERYLDHTPIPIKTLLGTGKSAIT-FDFVPI----------------EEATKYAAE 504 Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 D E T L++RL P ER + + + RG ++D D + ++ AQ Sbjct: 505 DAEITLRLWQRLKPRLHLAQVTRVYEWMERPMVPVLAEMEMRGIKVDRDTLSRMSNAFAQ 564 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + L+ +I +L + L LF G + + K + LA Sbjct: 565 KMAGLEAEIHELAGESF-NVGSPAQLGEILFEKMGFEGGKTGKSG-KYSTPADVLEDLAT 622 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 + L R + KL + L + ++ GR+ + GA+ TGR + QN Sbjct: 623 EHDLPRRVLDWRQLSKLKSTYTDALQDHINPETGRVHTSYSIAGAN-TGRLASTDPNLQN 681 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A G LV D + IE R+L Sbjct: 682 IPVRS------------------------EEGRRIREAFVAEPGHVLVSLDYSQIELRIL 717 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A IAG D AF +G DI+ T ++ F+ P+D+++ E R K + + Y G A Sbjct: 718 AHIAGIDALKTAFRDGLDIHAMTASEMFDVPLDEMTPEVRRQAKAINFGVIYGISGFGLA 777 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + + + + + + D A + Sbjct: 778 RNLRIPRAEAQAFIDTYFERFPGIRAYMDDTVAFAKEHKYVQTLFGRKIHTPEIGAKGPQ 837 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++++A + LQ+ +L + Sbjct: 838 AGFAKRAAINAPIQGTAADIIRRAMVRMPAAIADLPARMLLQVHDELIFEVEEDAVDRVI 897 Query: 538 ISARRVAN 545 + R+V Sbjct: 898 PAVRQVME 905 >gi|37524397|ref|NP_927741.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783821|emb|CAE12681.1| DNA polymerase I [Photorhabdus luminescens subsp. laumondii TTO1] Length = 929 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 99/594 (16%), Positives = 199/594 (33%), Gaps = 96/594 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V A A + + P +L ++ + + L L Sbjct: 354 DTETDSLDTLTANLVGVSFAISAGDAAYLPLGHDYLGAPEQL----DREVVLAALKPLLE 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D ++ + N F+R + + GI++ + T + + + + + HL Sbjct: 410 DSNLLKIGQNIKFDRGVLARY-GIELQGIAY-DTMLESYVLNSVAGMGRHDMDSLAERHL 467 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 IA K + + Y D + T L + + P + Sbjct: 468 NHKTTTFEEIAGKGKNQLTFNQVAV---------EQAAMYAAEDADVTLLLHQAMWPQLE 518 Query: 183 G-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E L ++ + G ID +++ + + I +L+++ +L + Sbjct: 519 KAPTLEKVFLNTEMPLVMVLSRMERTGVLIDANILAEHSKEITARLDELEKEAHELAGEV 578 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + +V + S + + +LA L ++ + K Sbjct: 579 FNLA-SPKQLQTILFEKLQLPVVKKTPNGAPST-NEEVLEELADTHALPKVILEHRGLAK 636 Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + L + V + T + TGR S QN+P + + Sbjct: 637 LKSTYTDKLPQMVHPLTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRNK----------- 685 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G +++ AD + IE R++A ++ + +KAFA G+ Sbjct: 686 -------------EGRRIRQAFVAPEGYRIMAADYSQIELRIMAHLSQDQGLLKAFAEGK 732 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462 DI+ T A+ F P+++V+ EQR K + L Y A + + + Sbjct: 733 DIHRATAAEVFGLPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRYMDLY 792 Query: 463 SQNVKSTSTFEDWEQ---------------------AESHHLWMQDQYPEFAVKDKLIGT 501 + + + + +S + + A+ + GT Sbjct: 793 FERYPGVLAYMERTRKQAEEQGYVETLDGRRLYLSDIKSRNAMRRKAAEREAINAPMQGT 852 Query: 502 ACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++KKA A K + ++Q+ +L E R + Sbjct: 853 AADIIKKAMIAVDDWIVSEEPKVRMIMQVHDELVFEVHESELEYAEQKIRELME 906 Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 Q + DI+ + M + +++ VHDE+V E ++ ++ + LM Sbjct: 850 QGTAADIIKKAMIAVDDWIVSEEPKVRMIMQVHDELVFEVHESELEYAEQKIRELM 905 >gi|99082604|ref|YP_614758.1| DNA polymerase I [Ruegeria sp. TM1040] gi|99038884|gb|ABF65496.1| DNA polymerase I [Ruegeria sp. TM1040] Length = 935 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 94/550 (17%), Positives = 187/550 (34%), Gaps = 82/550 (14%) Query: 46 DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D E D L+ L+ D+ ++ + N ++ +F + GID+ A Sbjct: 398 DLAEGQMPLKDALEMLKPVLEDDAILKIGQNMKYDAKIFARN-GIDVTPIDDTMLLSYAL 456 Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAW 156 G+ + + + GK+ I D+ PY A+ ++ W Sbjct: 457 HGGMHGHGMDTLSERYLDHQPIPIKSLLGSGKSAITFDRVSIEDATPYAAEDADITLRLW 516 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q F + T +++ L ER L + + G ++D D + ++ +Q+ Sbjct: 517 QQFKPQLHQKQVTT--VYETL------ERPLVPVLAQMEQHGIKVDRDTLSRMSNAFSQK 568 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L+ +I +L + L LF + + T + LA + Sbjct: 569 MAALEAEIHELAGETF-NVGSPKQLGEILFDKMSLPGGKKGK-TGAYATGADILEDLATE 626 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L + KL + L E + GR+ + GA+ TGR + QN+ Sbjct: 627 HTLPARVLDWRQLSKLKSTYTDALQEHIHPETGRVHTSYLQTGAN-TGRLASSDPNLQNI 685 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G L+ D + IE R+LA Sbjct: 686 PVRS------------------------EEGRRIREAFVADEGNVLLSLDYSQIELRILA 721 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 +AG D +AFA+G DI+ T ++ F+ P+++++ + R K + + Y G A+ Sbjct: 722 HVAGIDALKQAFADGHDIHAMTASEVFDVPLEEMTPDIRRKAKAINFGVIYGISGFGLAR 781 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------ 488 + + ++ + + D + Sbjct: 782 NLRIPRGEAQGFIDRYFERFPGIRQYMDDTVNFAKEHGYVQTLFGRKIHTPEIAAKGPRA 841 Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARR 542 A+ + GTA +++++A + + ++ + + V E Sbjct: 842 SFAKRAAINAPIQGTAADVIRRAMVRMPEAIAHLPARMLLQVHDELLFEVPED---HVEE 898 Query: 543 VANVPRLVMR 552 +V R +M Sbjct: 899 TISVAREIME 908 Score = 38.9 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + D++ M ++L VHDE++ E P+ ++ +M Sbjct: 853 IQGTAADVIRRAMVRMPEAIAHLPARMLLQVHDELLFEVPEDHVEETISVAREIM 907 >gi|90420752|ref|ZP_01228658.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] gi|90335043|gb|EAS48804.1| DNA polymerase I [Aurantimonas manganoxydans SI85-9A1] Length = 976 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 99/568 (17%), Positives = 186/568 (32%), Gaps = 94/568 (16%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL-----WDRTEQSAMP 54 L D E S L V A +A A+ L + +P Sbjct: 382 LAFDTEASSLSAMKCDLVGVSFATRAGRAAYVPLAHVSPSGEADLLSDKAVEDEIGPQLP 441 Query: 55 SD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 D L L D+ V+ + N ++ ++ ++ GI + T +++ +SL Sbjct: 442 IDEALAILKPVLEDDAVLKIGQNVKYDYLVMRRH-GITMAPFD--DTMLISYALDASASL 498 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L + KG+ + Y D + Sbjct: 499 AGHGMDELSERFLGHKPMSYKELCGSGKGARPIAACAIDKVTA---------YAAEDADV 549 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L++ L P ER L + + +RG ++D ++ +L AQ++ Sbjct: 550 TLRLWQVLKPRLVAEGLATVYERLERPLVAVLARMEERGIKVDRQILSRLSGRFAQKQAG 609 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278 L+ +I ++ + L LF G+ ++ + + LA + Sbjct: 610 LEAEIAEIAGETF-NPGSPKQLGEVLFGKLGLPGGKKTKSG-QWSTDVRVLEDLAAEGHP 667 Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L R + KL +TL + + GR+ + ++ TGR S QN+P + Sbjct: 668 LPRRIVDWRQLTKLKGTYTDTLPGHMDAQGRIHTSYSM-ASTTTGRLSSSEPNLQNIPVR 726 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R+ +A G LV AD + IE R+LA IA Sbjct: 727 T------------------------EEGRAIRTAFVAPAGHSLVSADYSQIELRILAHIA 762 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 +AF G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 763 DIPQLKEAFREGLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLS 822 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 G ++++ + + D + S + ++ Sbjct: 823 IPRDEAGTYIKRYFERFPGIRDYMDSTKAFAKEHGHVETLFGRRVHYPDIRSPNASVRAF 882 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQG 516 A+ + GTA +++++A Sbjct: 883 NERAAINAPIQGTAADIIRRAMIRMEPA 910 >gi|197116765|ref|YP_002137192.1| DNA polymerase I [Geobacter bemidjiensis Bem] gi|197086125|gb|ACH37396.1| DNA polymerase I [Geobacter bemidjiensis Bem] Length = 892 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 120/595 (20%), Positives = 214/595 (35%), Gaps = 104/595 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQ-----AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 ID+ET S P + V YA A + + P +L ++ + L Sbjct: 317 AIDLETTSLNP-REARVVGYAVSCRPHEARYIPVGHRYLGAPEQLP----EALVLEILGP 371 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALN 117 L+D + N ++ + + G ++ + C ++LA P+ S LAL Sbjct: 372 LLKDPARRKIGQNLKYDYQVLRMA-GFEM--EGIWCDTMLAAYLVNPARNSQGLDALALE 428 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + +H A +A K ++ D RA G Y D +AT L + L Sbjct: 429 YLDHRMI---SYAEVAGSGKCELNFSEVDLDRA---------GPYSCEDADATYLLHEIL 476 Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 +P L D E L + + G ++D+DL+ +L ++ +L+ I + Sbjct: 477 LPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSAGFGKQLIELEAQIHEH 536 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + L LF G+ + ++G + + +LA++ + RL Sbjct: 537 CGGPF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLLLQYR 595 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 +I KL + L + V GR+ + + TGR S QN+P + Sbjct: 596 SISKLKSTYTDALPKLVDPATGRVHTSYN-QAVTSTGRLSSSDPNLQNIPIR-------- 646 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 G +R IA G ++ AD + IE RVLA ++G+ +A Sbjct: 647 ----------------GEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDRVLCEA 690 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA GEDI+ T ++ F + V+ E R KV+ + Y G AK Sbjct: 691 FAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTPKQAKA 750 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + + + +F D + S + ++ AV Sbjct: 751 FIDSYFERHSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQRNAVNY 810 Query: 497 KLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + G+A +++K A R + ++Q+ +L ++ R Sbjct: 811 PIQGSAADIIKAAMLRVIRRMQQERVASRLIMQVHDELVFEVPEAERDLMEELVR 865 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + +++ VHDE+V E P+ + L Sbjct: 812 IQGSAADIIKAAMLRVIRRMQQERVASRLIMQVHDELVFEVPEAERDLMEELVR 865 >gi|253698996|ref|YP_003020185.1| DNA polymerase I [Geobacter sp. M21] gi|251773846|gb|ACT16427.1| DNA polymerase I [Geobacter sp. M21] Length = 892 Score = 305 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 120/583 (20%), Positives = 211/583 (36%), Gaps = 114/583 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQ-----AVITLCAYAWDDEPVKLWDRTEQSAMPSDLL- 58 ID+ET S P + V YA A + + P +P L+ Sbjct: 317 AIDLETTSLNP-REARVVGYAASCRPHEAWYIPVGHRYLGAP---------EQLPESLVL 366 Query: 59 ----QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNA 112 L+D + N ++ + + G ++ + C ++LA P+ S Sbjct: 367 EILGPLLKDPARRKIGQNLKYDYQVL-RIAGFEL--EGIWCDTMLAAYLVNPARNSQGLD 423 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 LAL + +H A +AR K ++ D RA G Y D +AT Sbjct: 424 ALALEYLDHRMI---SYAEVARSGKCELNFSEVDLDRA---------GPYSCEDADATYL 471 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L + L+P L D E L + + G ++D+DL+ +L ++ +L+ Sbjct: 472 LHEILLPKVREQGMEELLFDLEMPLMRILADMELHGVKLDVDLMKELSTGFGKQLIELEA 531 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 I + G + L LF G+ + ++G + + +LA++ + RL Sbjct: 532 QIHEHCGGPF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARL 590 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +I KL + L + V+ GR+ + + TGR S QN+P + Sbjct: 591 LLQYRSISKLKSTYTDALPKLVAPATGRVHTSYN-QAVTSTGRLSSSDPNLQNIPIR--- 646 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 G +R IA G ++ AD + IE RVLA ++G+ Sbjct: 647 ---------------------GEEGRGIRRAFIAEPGSLMLSADYSQIELRVLAHLSGDR 685 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 +AFA GEDI+ T ++ F + V+ E R KV+ + Y G AK Sbjct: 686 VLCEAFAAGEDIHRRTASEVFGMFPELVTSEMRRQAKVINFGVIYGQGAFSLAKELGVTP 745 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 + + + +F D + S + ++ Sbjct: 746 KQAKAFIDSYFERHSGARSFLDSCIREAEVCGFVTTIMGRRLCIPEIASKNGNVRAFAQR 805 Query: 492 FAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 AV + G+A +++K A R + ++Q+ +L Sbjct: 806 NAVNYPIQGSAADIIKAAMLRVNRRMQEERVASRLIMQVHDEL 848 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + +++ VHDE++ E P+ + L Sbjct: 812 IQGSAADIIKAAMLRVNRRMQEERVASRLIMQVHDELIFEVPEGERDLMEELVR 865 >gi|261210183|ref|ZP_05924480.1| DNA polymerase I [Vibrio sp. RC341] gi|260840723|gb|EEX67272.1| DNA polymerase I [Vibrio sp. RC341] Length = 938 Score = 304 bits (778), Expect = 3e-80, Method: Composition-based stats. Identities = 115/587 (19%), Positives = 211/587 (35%), Gaps = 109/587 (18%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + VGV +A AE +A A+ + D P +L +++ + + L L Sbjct: 364 DTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQL----DRAWVIAQLKPLLE 419 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 DE V N ++ + + G+++ R T + + N + LAL F +H Sbjct: 420 DENKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477 Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +GK + F + + Q +Y D + T L +R Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520 Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + PL + E L + I G ID L+ + IA +L++ Sbjct: 521 ISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKAY 580 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L S L+ LF + ++ + S + + +LA D L ++ Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 639 YRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A +G K++ D + IE R++A ++G+ + Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AF G+DI+ T A+ PI++VS EQR K + L Y AK Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793 Query: 456 GLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFAV 494 + ++ + ED + +++ + A+ Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAEQGYVETIFGRRLHLPEITSRNGMRRKAAERAAI 853 Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534 + GTA +++KKA + + G ++L + + V+E Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVFEVEE 900 >gi|157163334|ref|YP_001460652.1| DNA polymerase I [Escherichia coli HS] gi|157069014|gb|ABV08269.1| DNA polymerase I [Escherichia coli HS] Length = 928 Score = 303 bits (776), Expect = 6e-80, Method: Composition-based stats. Identities = 108/590 (18%), Positives = 198/590 (33%), Gaps = 116/590 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++ + KL + L ++ R T + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTRRVHTSYHQAVTATGRLSSTDPNLQNIP---- 680 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA +V AD + IE R++A ++ + Sbjct: 681 --------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRD 720 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 721 KGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIP 780 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------- 493 + + + + + +A++ L++ D Sbjct: 781 RKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAE 840 Query: 494 ---VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 841 RAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.5 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|238797621|ref|ZP_04641117.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] gi|238718485|gb|EEQ10305.1| DNA polymerase I [Yersinia mollaretii ATCC 43969] Length = 932 Score = 303 bits (775), Expect = 7e-80, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 199/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GI+ Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLATLKPLLEDDKALKVGQNLKFDQSMLARY-GIE 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LRGIAF-DTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L++ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F P++KV+ Sbjct: 694 QAFIAPQGYRIMAADYSQIELRIMAHLSQDEGLLTAFAAGKDIHRATAAEVFGLPLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 SEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 DQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909 >gi|293417324|ref|ZP_06659948.1| DNA polymerase I [Escherichia coli B185] gi|291430844|gb|EFF03840.1| DNA polymerase I [Escherichia coli B185] Length = 928 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 109/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIESGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++D G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIALD----------------EAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|229525005|ref|ZP_04414410.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] gi|229338586|gb|EEO03603.1| DNA polymerase I [Vibrio cholerae bv. albensis VL426] Length = 906 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 197/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 357 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 469 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDSKLEQVYREIEMPLVPVL 514 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L++ +L + L+ LF + Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGKPF-NVSSPKQLQTILFEQMKL 573 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 632 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868 >gi|229520098|ref|ZP_04409526.1| DNA polymerase I [Vibrio cholerae TM 11079-80] gi|229342886|gb|EEO07876.1| DNA polymerase I [Vibrio cholerae TM 11079-80] Length = 906 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 357 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 469 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDSKLEQVYREIEMPLVPVL 514 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA ++L++ +L S L+ LF + Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLEQLEQKAYELAGQPFNLS-SPKQLQTILFEQMKL 573 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRV 632 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868 >gi|82546208|ref|YP_410155.1| DNA polymerase I [Shigella boydii Sb227] gi|81247619|gb|ABB68327.1| DNA polymerase I [Shigella boydii Sb227] Length = 928 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 107/587 (18%), Positives = 198/587 (33%), Gaps = 110/587 (18%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + +H T E I + N + + G Y D + T +L Sbjct: 463 ERWLKHKTITFE-----------EIAGKGKNPLTFNQIAL-EEAGRYAAEDADVTLQLHL 510 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ P + E L + I G +ID ++ E + +L++ Sbjct: 511 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 570 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ S T L+ LF GI + + G S S + +LA D L ++ Sbjct: 571 HEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVIL 628 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 629 EYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------- 680 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +V AD + IE R++A ++ + Sbjct: 681 -----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 723 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 724 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 783 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA---------- 493 + + + + + +A++ L++ D Sbjct: 784 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 843 Query: 494 VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 844 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|221640521|ref|YP_002526783.1| DNA polymerase I [Rhodobacter sphaeroides KD131] gi|221161302|gb|ACM02282.1| DNA polymerase I [Rhodobacter sphaeroides KD131] Length = 937 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 100/585 (17%), Positives = 189/585 (32%), Gaps = 87/585 (14%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAM 53 + ID ET S L + + A A + + + D+ Sbjct: 351 HVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMPLGLA 410 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 S L L DE+++ + N ++ + + GI + A G + Sbjct: 411 LSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHGMDEL 469 Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDV 167 T + GK+ I F + ++ V + W+LF R Sbjct: 470 CDTYLGHKPIAIKTLLGSGKSQIT-FDRVPVEQAVCYAAEDADVTFRLWKLFKPQLHRAR 528 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T +++ L ER L + + G ++D D + ++ AQ+ L+ +I L Sbjct: 529 VTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHAL 580 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281 G + L LF G+ + + LA + +L+ Sbjct: 581 AGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNG-AWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S + L E + GR+ + GA+ TGR + QN+P + Sbjct: 639 RQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS------ 691 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A GK LV D + IE R+LA IA + Sbjct: 692 ------------------EEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQ 733 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T ++ FN P++ + R K + + Y G A+ + + Sbjct: 734 AFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQ 793 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKD 496 + ++ + + D A + + A+ Sbjct: 794 GFIDRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINAKGPGAGFARRAAINA 853 Query: 497 KLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 + GTA +++++A + + + + + V+E + Sbjct: 854 PIQGTAADVIRRAMIRMPKAIRGMPATMLLQVHDELLFEVEEEAA 898 >gi|308051440|ref|YP_003915006.1| DNA polymerase I [Ferrimonas balearica DSM 9799] gi|307633630|gb|ADN77932.1| DNA polymerase I [Ferrimonas balearica DSM 9799] Length = 922 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 111/600 (18%), Positives = 200/600 (33%), Gaps = 110/600 (18%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID ET S L + A + A+ ++ PV+L ++ + + L Sbjct: 347 AIDTETTSIDYMAAELVGLSFAVEAGKGAYLPVAHDYEGAPVQL----DRDTVLAKLKPL 402 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFS 119 L D V N ++ + K GI + + T + + N +AL + Sbjct: 403 LEDTAPRKVGQNLKYDMSVLAKY-GIALNGIAF-DTMLESYCFNSTAGRHNMDDMALKYL 460 Query: 120 EHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H T + GK + F + + + Y D + T L + Sbjct: 461 GHKTIHFEDIAGKGAKQKTFNQIPL----------------EEAAPYAAEDADITLRLHQ 504 Query: 176 RLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P ER L + + G ID D + + IA L++ Sbjct: 505 HLWPRLQELAGPTRVFEQLERPLVPIMSAMERHGVLIDTDQLHQQSSEIATTLDSLEQQA 564 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ + + T L+ F G ++ + S + +LA D L ++ Sbjct: 565 HEIAGEVF-NLGSTKQLQAIFFDKLGYPVLKKTPKGAPSTAEE-VLQELALDYPLPKIIL 622 Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ KL + L + V GR+ + + TGR S QN+P + Sbjct: 623 EHRSLAKLKNTYTDKLPQLVKPSGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRT----- 676 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G KL+ D + IE R++A ++ + + Sbjct: 677 -------------------AEGRRIRQAFIAPEGYKLLAIDYSQIELRIMAHLSQDKGLL 717 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AFA G+DI+ T A+ F D V+ EQR K + L Y AK + Sbjct: 718 EAFAAGKDIHKATAAEVFGVDFDSVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIGRAEA 777 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + ++ + D +A++H + Q A+ Sbjct: 778 QEYIDRYFHRYPGVLEYMDRTRAQAHDKEYVETLMGRRLHLPEINARNKMRQQAAERTAI 837 Query: 495 KDKLIGTACELVKKAW-----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +++KKA + ++Q+ +L V E + + Sbjct: 838 NAPMQGTAADIIKKAMLLVADYLSQQAEDEIHLIMQVHDELVFEVREGVAEQHKDALCEL 897 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 12/74 (16%) Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLMTKN 654 Q + DI+ + M + +++ VHDE+V E + LC LM++ Sbjct: 842 QGTAADIIKKAMLLVADYLSQQAEDEIHLIMQVHDELVFEVREGVAEQHKDALCELMSQA 901 Query: 655 PSWAK-GLPLKAEG 667 A+ +PL AEG Sbjct: 902 ---AELDVPLLAEG 912 >gi|153830617|ref|ZP_01983284.1| DNA polymerase I [Vibrio cholerae 623-39] gi|148873889|gb|EDL72024.1| DNA polymerase I [Vibrio cholerae 623-39] Length = 934 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 199/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 385 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L+++ +L S L+ LF + Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S ++ + A+ + GTA +++KKA + Sbjct: 816 QLGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896 >gi|320185486|gb|EFW60254.1| DNA polymerase I [Shigella flexneri CDC 796-83] Length = 928 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 107/587 (18%), Positives = 198/587 (33%), Gaps = 110/587 (18%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + +H T E I + N + + G Y D + T +L Sbjct: 463 ERWLKHKTITFE-----------EIAGKGKNPLTFNQIAL-EEAGRYAAEDADVTLQLHL 510 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ P + E L + I G +ID ++ E + +L++ Sbjct: 511 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 570 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ S T L+ LF GI + + G S S + +LA D L ++ Sbjct: 571 HEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVIL 628 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 629 EYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------- 680 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +V AD + IE R++A ++ + Sbjct: 681 -----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 723 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 724 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 783 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA---------- 493 + + + + + +A++ L++ D Sbjct: 784 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 843 Query: 494 VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 844 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|77464609|ref|YP_354113.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] gi|77389027|gb|ABA80212.1| DNA polymerase I [Rhodobacter sphaeroides 2.4.1] Length = 937 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 100/585 (17%), Positives = 189/585 (32%), Gaps = 87/585 (14%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAM 53 + ID ET S L + + A A + + + D+ Sbjct: 351 HVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMPLGLA 410 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 S L L DE+++ + N ++ + + GI + A G + Sbjct: 411 LSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHGMDEL 469 Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDV 167 T + GK+ I F + ++ V + W+LF R Sbjct: 470 CDTYLGHKPIAIKTLLGSGKSQIT-FDRVPVEQAVCYAAEDADVTFRLWKLFKPQLHRAR 528 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T +++ L ER L + + G ++D D + ++ AQ+ L+ +I L Sbjct: 529 VTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHAL 580 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281 G + L LF G+ + + LA + +L+ Sbjct: 581 AGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNG-AWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S + L E + GR+ + GA+ TGR + QN+P + Sbjct: 639 RQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS------ 691 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A GK LV D + IE R+LA IA + Sbjct: 692 ------------------EEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQ 733 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T ++ FN P++ + R K + + Y G A+ + + Sbjct: 734 AFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQ 793 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKD 496 + ++ + + D A + + A+ Sbjct: 794 GFIDRYFERFPGIRGYMDETIAFAKANGHVETLFGRRINTPEINAKGPGAGFARRAAINA 853 Query: 497 KLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 + GTA +++++A + + + + + V+E + Sbjct: 854 PIQGTAADVIRRAMIRMPKAIRGMPATMLLQVHDELLFEVEEEAA 898 >gi|323499675|ref|ZP_08104643.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] gi|323315276|gb|EGA68319.1| DNA polymerase I [Vibrio sinaloensis DSM 21326] Length = 929 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 110/568 (19%), Positives = 200/568 (35%), Gaps = 101/568 (17%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + GV AY A+ + D P +L ++ + L L D+ V N ++ Sbjct: 375 TEEGVAAY------VPVAHDYLDAPAQL----DRDWVLEQLKPILEDDAQAKVGQNLKYD 424 Query: 77 RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + GI++ + T + + N + LAL F +H E Sbjct: 425 ASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ------- 475 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184 I N ++ Y D + T L RL+ + E Sbjct: 476 ----IAGKGKKQLTFNQIEL-DEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIE 530 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + I G ID + + IAQ +L++ ++ + + L+ Sbjct: 531 VPLVPVLSRIERTGVLIDDMKLSAQSQEIAQRLDELEQKAYEIAEQEF-NMNSPKQLQAI 589 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299 LF G+ ++ + S + + +LA D L +L + KL + L + + Sbjct: 590 LFEKMGLPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMI 648 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 649 NPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 683 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R IA +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ Sbjct: 684 DEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMG 743 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473 T ID+VS EQR K + L Y AK + ++ + E Sbjct: 744 TTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYMNKYFERYPGVMQYME 803 Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510 D A + +++ + A+ + GTA +++KKA Sbjct: 804 DTRSAAADQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 863 Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQE 534 +A+ QG ++L + + V+E Sbjct: 864 DEWIQAEGQGRVKLLMQVHDELVFEVEE 891 >gi|307314016|ref|ZP_07593630.1| DNA polymerase I [Escherichia coli W] gi|306906333|gb|EFN36849.1| DNA polymerase I [Escherichia coli W] gi|315063149|gb|ADT77476.1| DNA polymerase I [Escherichia coli W] gi|323380787|gb|ADX53055.1| DNA polymerase I [Escherichia coli KO11] Length = 928 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQITL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|229515857|ref|ZP_04405315.1| DNA polymerase I [Vibrio cholerae TMA 21] gi|229347120|gb|EEO12081.1| DNA polymerase I [Vibrio cholerae TMA 21] Length = 906 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 197/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE+ V N ++ + + G++ Sbjct: 357 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 Q +Y D + T L +R+ PL + E L + Sbjct: 469 --------------QEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 514 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L++ +L S L+ LF + Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLS-SPKQLQTILFEQMKL 573 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 632 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868 >gi|238785638|ref|ZP_04629616.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] gi|238713473|gb|EEQ05507.1| DNA polymerase I [Yersinia bercovieri ATCC 43970] Length = 932 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 99/576 (17%), Positives = 199/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE + V N F++ + + GI+ Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLATLKPLLEDEKALKVGQNLKFDQSMLARY-GIE 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LRGIAF-DTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EEAGPYASEDADVTLQLHLVLWPKLQESEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L++ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F P++KV+ Sbjct: 694 QAFIAPKGYRIMAADYSQIELRIMAHLSQDEGLLAAFAAGKDIHRATAAEVFGLPLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 DQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 874 SEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909 >gi|258626622|ref|ZP_05721452.1| DNA polymerase I [Vibrio mimicus VM603] gi|258581126|gb|EEW06045.1| DNA polymerase I [Vibrio mimicus VM603] Length = 938 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 112/583 (19%), Positives = 207/583 (35%), Gaps = 109/583 (18%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + VGV +A AE +A A+ + D P +L ++ + + L L Sbjct: 364 DTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQL----DREWVITQLKPLLE 419 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 DE+ V N ++ + + G+++ R T + + N + LAL F +H Sbjct: 420 DESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477 Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +GK + F + + Q +Y D + T L +R Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520 Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + PL + E L + I G ID L+ + IA +L++ Sbjct: 521 ISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKAY 580 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L S L+ LF + ++ + S + + +LA D L ++ Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 639 YRGLAKLKSTYTDKLPKMINPNTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A +G K++ D + IE R++A ++G+ + Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AF G+DI+ T A+ PI++VS EQR K + L Y AK Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + ++ + + + + S + + A+ Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAI 853 Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530 + GTA +++KKA + + G ++L + + Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVF 896 >gi|147675220|ref|YP_001218310.1| DNA polymerase I [Vibrio cholerae O395] gi|262167045|ref|ZP_06034762.1| DNA polymerase I [Vibrio cholerae RC27] gi|146317103|gb|ABQ21642.1| DNA polymerase I [Vibrio cholerae O395] gi|227011890|gb|ACP08100.1| DNA polymerase I [Vibrio cholerae O395] gi|262024563|gb|EEY43247.1| DNA polymerase I [Vibrio cholerae RC27] Length = 934 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 385 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L+++ +L S L+ LF + Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896 >gi|254851493|ref|ZP_05240843.1| DNA polymerase I [Vibrio cholerae MO10] gi|254847198|gb|EET25612.1| DNA polymerase I [Vibrio cholerae MO10] Length = 934 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 385 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L+++ +L S L+ LF + Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896 >gi|15640140|ref|NP_229767.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|153822326|ref|ZP_01974993.1| DNA polymerase I [Vibrio cholerae B33] gi|227080344|ref|YP_002808895.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255743936|ref|ZP_05417891.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|298501121|ref|ZP_07010921.1| DNA polymerase I [Vibrio cholerae MAK 757] gi|9654507|gb|AAF93286.1| DNA polymerase I [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126520152|gb|EAZ77375.1| DNA polymerase I [Vibrio cholerae B33] gi|227008232|gb|ACP04444.1| DNA polymerase I [Vibrio cholerae M66-2] gi|255738419|gb|EET93809.1| DNA polymerase I [Vibrio cholera CIRS 101] gi|297540155|gb|EFH76216.1| DNA polymerase I [Vibrio cholerae MAK 757] Length = 934 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 385 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L+++ +L S L+ LF + Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896 >gi|306813871|ref|ZP_07448047.1| DNA polymerase I [Escherichia coli NC101] gi|305852869|gb|EFM53316.1| DNA polymerase I [Escherichia coli NC101] Length = 928 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQNILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|332084081|gb|EGI89286.1| DNA polymerase I [Shigella boydii 5216-82] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|260870580|ref|YP_003236982.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300906177|ref|ZP_07123891.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|301303329|ref|ZP_07209453.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|301328175|ref|ZP_07221307.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|257766936|dbj|BAI38431.1| DNA polymerase I [Escherichia coli O111:H- str. 11128] gi|300402027|gb|EFJ85565.1| DNA-directed DNA polymerase [Escherichia coli MS 84-1] gi|300841283|gb|EFK69043.1| DNA-directed DNA polymerase [Escherichia coli MS 124-1] gi|300845357|gb|EFK73117.1| DNA-directed DNA polymerase [Escherichia coli MS 78-1] gi|315254225|gb|EFU34193.1| DNA-directed DNA polymerase [Escherichia coli MS 85-1] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|218701437|ref|YP_002409066.1| DNA polymerase I [Escherichia coli IAI39] gi|218371423|emb|CAR19256.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI39] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|260432091|ref|ZP_05786062.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] gi|260415919|gb|EEX09178.1| DNA polymerase I [Silicibacter lacuscaerulensis ITI-1157] Length = 933 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 104/552 (18%), Positives = 191/552 (34%), Gaps = 85/552 (15%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D + MP D L L D +++ + N ++ +F + G+D+ A Sbjct: 395 DALAEGQMPLDEALKLLKPVLEDPSILKIGQNMKYDAKIFARY-GVDVAPIDDTMLMSYA 453 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQ 154 G + + GK+ I F K ID Y A+ ++ Sbjct: 454 MHAGEHGHGMDTLSERYLGHTPIPIKPLLGSGKSAIT-FDKVPIDEATAYAAEDADITLR 512 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 W+LF R V+ T +++ L ER L + + G ++D D++ ++ A Sbjct: 513 LWKLFKPQLHR-VQVTT-VYETL------ERPLVPVLAQMEMHGIKVDRDVLSRMSNAFA 564 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 Q+ L+ +I +L + L LF T K + LA Sbjct: 565 QKMAALEAEIHELAGETF-NVGSPAQLGEILFEKM-GLEGGKKGKTGKYSTGADVLEDLA 622 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328 + L R + KL + L ++ D GR+ + GA+ TGR + Q Sbjct: 623 TEHELPRKVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYAITGAN-TGRLASTDPNLQ 681 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + +R +A G LV D + IE R+ Sbjct: 682 NIPVRT------------------------EEGRRIREAFVAEPGNVLVSLDYSQIELRI 717 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 LA IA +AFA+G DI+ T ++ F+ P+D+++ E R K + + Y G Sbjct: 718 LAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRKAKAINFGVIYGISGFGL 777 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------- 488 A+ + + + ++ + + D A + Sbjct: 778 ARNLRIPRAEAQGFIDRYFERFPGIRRYMDDTIAFAKEHGYVQTLFGRKIHTPEINAKGP 837 Query: 489 ----YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISA 540 A+ + GTA +++++A + + ++ + + V E Sbjct: 838 HAGFARRAAINAPIQGTAADVIRRAMVRMPEAIDGLPAKMLLQVHDELLFEVAEDA---V 894 Query: 541 RRVANVPRLVMR 552 + + R VM Sbjct: 895 DQTIEIARDVME 906 Score = 38.9 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 +Q + D++ M ++L VHDE++ E + + +M P Sbjct: 851 IQGTAADVIRRAMVRMPEAIDGLPAKMLLQVHDELLFEVAEDAVDQTIEIARDVMENAPD 910 >gi|218550897|ref|YP_002384688.1| DNA polymerase I [Escherichia fergusonii ATCC 35469] gi|218358438|emb|CAQ91085.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia fergusonii ATCC 35469] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|83951243|ref|ZP_00959976.1| DNA polymerase I [Roseovarius nubinhibens ISM] gi|83839142|gb|EAP78438.1| DNA polymerase I [Roseovarius nubinhibens ISM] Length = 933 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 104/550 (18%), Positives = 197/550 (35%), Gaps = 88/550 (16%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D + +P D L L D V+ + N ++ +F LG+ I A Sbjct: 395 DALAEGQLPRDAVLSALRPVLEDAAVLKIGQNMKYDAKIFA-GLGLTIAPIDDTMLMSYA 453 Query: 101 RTNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSIDS-PPYDCTRAN-HV 153 +G+ + L+ + H T + GK+ + F K ID Y A+ + Sbjct: 454 LNSGIHNH-GMDALSERYLAHNPIPIKTLLGTGKSAVT-FDKVPIDEAVKYAAEDADITL 511 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + W +F + T +++ L ER L + + G +D D++ ++ Sbjct: 512 RLWHMFKPQLHQKQVTT--VYETL------ERPLVPVLARMERHGILVDRDVLSRMSNAF 563 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 AQ+ L+ +I +L + L LF ++ + T + L Sbjct: 564 AQKMGGLEAEIHELAGRSF-NVGSPKQLGEILFDEMALEGGKKGK-TGAYATGADVLEDL 621 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 A + L + KL + L + + GR+ + GAS TGR + Sbjct: 622 ATEHELPARVLDWRQLSKLKSTYTDALQDHIDPNTGRVHTSYVQTGAS-TGRLASTDPNL 680 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R +A GK+LV D + IE R Sbjct: 681 QNIPVRS------------------------EEGRRIREAFVADAGKRLVSLDYSQIELR 716 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443 +LA +AG D +AF +G DI+ T ++ F P+D+++ + R K + + Y G Sbjct: 717 ILAHVAGIDALKQAFRDGLDIHAMTASEMFGVPLDEMTSDVRRRAKAINFGVIYGISGFG 776 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQY------------- 489 A+ + + + ++ + + D + H ++Q + Sbjct: 777 LARNLRIPRAEAQGFIDRYFERFPGIRAYMDETVEFAKAHGYVQTLFGRRIHTPEIAAKG 836 Query: 490 ------PEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEG 535 A+ + GTA +++++A + + LQ+ +L + Sbjct: 837 PRAGFAKRAAINAPIQGTAADIIRRAMIRMPEAIADLPCKMLLQVHDELLFEAEEDAVDA 896 Query: 536 GSISARRVAN 545 +AR V Sbjct: 897 VITAAREVME 906 >gi|324115642|gb|EGC09580.1| DNA polymerase I [Escherichia coli E1167] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 201/591 (34%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + ++GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIELGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.5 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|331649706|ref|ZP_08350786.1| DNA polymerase I (POL I) [Escherichia coli M605] gi|330908181|gb|EGH36700.1| DNA polymerase 1 [Escherichia coli AA86] gi|331041339|gb|EGI13489.1| DNA polymerase I (POL I) [Escherichia coli M605] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|301023768|ref|ZP_07187505.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] gi|300396890|gb|EFJ80428.1| DNA-directed DNA polymerase [Escherichia coli MS 69-1] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|227885402|ref|ZP_04003207.1| DNA polymerase I [Escherichia coli 83972] gi|300937085|ref|ZP_07151949.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|300976637|ref|ZP_07173526.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|301046666|ref|ZP_07193796.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|227837660|gb|EEJ48126.1| DNA polymerase I [Escherichia coli 83972] gi|300301386|gb|EFJ57771.1| DNA-directed DNA polymerase [Escherichia coli MS 185-1] gi|300410020|gb|EFJ93558.1| DNA-directed DNA polymerase [Escherichia coli MS 45-1] gi|300457842|gb|EFK21335.1| DNA-directed DNA polymerase [Escherichia coli MS 21-1] gi|307556005|gb|ADN48780.1| DNA polymerase I [Escherichia coli ABU 83972] gi|315292801|gb|EFU52153.1| DNA-directed DNA polymerase [Escherichia coli MS 153-1] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|323974266|gb|EGB69395.1| DNA polymerase I [Escherichia coli TW10509] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|323954361|gb|EGB50146.1| DNA polymerase I [Escherichia coli H263] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|110644203|ref|YP_671933.1| DNA polymerase I [Escherichia coli 536] gi|191173870|ref|ZP_03035390.1| DNA polymerase I [Escherichia coli F11] gi|300985836|ref|ZP_07177621.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|110345795|gb|ABG72032.1| DNA polymerase I [Escherichia coli 536] gi|190905828|gb|EDV65447.1| DNA polymerase I [Escherichia coli F11] gi|300306506|gb|EFJ61026.1| DNA-directed DNA polymerase [Escherichia coli MS 200-1] gi|324006871|gb|EGB76090.1| DNA-directed DNA polymerase [Escherichia coli MS 57-2] gi|324012590|gb|EGB81809.1| DNA-directed DNA polymerase [Escherichia coli MS 60-1] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|331665510|ref|ZP_08366408.1| DNA polymerase I (POL I) [Escherichia coli TA143] gi|331057195|gb|EGI29185.1| DNA polymerase I (POL I) [Escherichia coli TA143] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLQYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 >gi|110807452|ref|YP_690972.1| DNA polymerase I [Shigella flexneri 5 str. 8401] gi|110617000|gb|ABF05667.1| DNA polymerase I [Shigella flexneri 5 str. 8401] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SHERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|30064847|ref|NP_839018.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|30043107|gb|AAP18829.1| DNA polymerase I [Shigella flexneri 2a str. 2457T] gi|281603252|gb|ADA76236.1| DNA polymerase I, 3--> 5 polymerase, 5--> 3 and 3--> 5 exonuclease [Shigella flexneri 2002017] Length = 928 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SHERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|260846368|ref|YP_003224146.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] gi|257761515|dbj|BAI33012.1| DNA polymerase I [Escherichia coli O103:H2 str. 12009] Length = 928 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|281180926|dbj|BAI57256.1| DNA polymerase I [Escherichia coli SE15] Length = 928 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|16131704|ref|NP_418300.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|74314369|ref|YP_312788.1| DNA polymerase I [Shigella sonnei Ss046] gi|89110164|ref|AP_003944.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K-12 substr. W3110] gi|157158243|ref|YP_001465344.1| DNA polymerase I [Escherichia coli E24377A] gi|170022122|ref|YP_001727076.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|170083336|ref|YP_001732656.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187733745|ref|YP_001882560.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188493758|ref|ZP_03001028.1| DNA polymerase I [Escherichia coli 53638] gi|191169441|ref|ZP_03031178.1| DNA polymerase I [Escherichia coli B7A] gi|193063893|ref|ZP_03044979.1| DNA polymerase I [Escherichia coli E22] gi|193068096|ref|ZP_03049061.1| DNA polymerase I [Escherichia coli E110019] gi|194430447|ref|ZP_03062929.1| DNA polymerase I [Escherichia coli B171] gi|194440160|ref|ZP_03072207.1| DNA polymerase I [Escherichia coli 101-1] gi|209921336|ref|YP_002295420.1| DNA polymerase I [Escherichia coli SE11] gi|218556422|ref|YP_002389336.1| DNA polymerase I [Escherichia coli IAI1] gi|218697577|ref|YP_002405244.1| DNA polymerase I [Escherichia coli 55989] gi|238902931|ref|YP_002928727.1| DNA polymerase I [Escherichia coli BW2952] gi|253775502|ref|YP_003038333.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254163815|ref|YP_003046923.1| DNA polymerase I [Escherichia coli B str. REL606] gi|256021501|ref|ZP_05435366.1| DNA polymerase I [Shigella sp. D9] gi|256026104|ref|ZP_05439969.1| DNA polymerase I [Escherichia sp. 4_1_40B] gi|293470175|ref|ZP_06664586.1| DNA polymerase I [Escherichia coli B088] gi|300819242|ref|ZP_07099442.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|300823683|ref|ZP_07103809.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300919043|ref|ZP_07135589.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300948178|ref|ZP_07162305.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300958283|ref|ZP_07170427.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|301027901|ref|ZP_07191194.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|301648434|ref|ZP_07248167.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|307140557|ref|ZP_07499913.1| DNA polymerase I [Escherichia coli H736] gi|309797831|ref|ZP_07692214.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|331644592|ref|ZP_08345711.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331655544|ref|ZP_08356536.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331670705|ref|ZP_08371541.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331675321|ref|ZP_08376071.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331679970|ref|ZP_08380632.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|118825|sp|P00582|DPO1_ECOLI RecName: Full=DNA polymerase I; Short=POL I gi|42461|emb|CAA23607.1| unnamed protein product [Escherichia coli] gi|147312|gb|AAA24402.1| DNA polymerase I [Escherichia coli] gi|304969|gb|AAB02998.1| DNA polymerase I [Escherichia coli str. K-12 substr. MG1655] gi|1790294|gb|AAC76861.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Escherichia coli str. K-12 substr. MG1655] gi|73857846|gb|AAZ90553.1| DNA polymerase I [Shigella sonnei Ss046] gi|85676195|dbj|BAE77445.1| fused DNA polymerase I 5'->3' exonuclease, 3'->5' polymerase and 3'->5' exonuclease [Escherichia coli str. K12 substr. W3110] gi|157080273|gb|ABV19981.1| DNA polymerase I [Escherichia coli E24377A] gi|169757050|gb|ACA79749.1| DNA polymerase I [Escherichia coli ATCC 8739] gi|169891171|gb|ACB04878.1| DNA polymerase I [Escherichia coli str. K-12 substr. DH10B] gi|187430737|gb|ACD10011.1| DNA polymerase I [Shigella boydii CDC 3083-94] gi|188488957|gb|EDU64060.1| DNA polymerase I [Escherichia coli 53638] gi|190900509|gb|EDV60321.1| DNA polymerase I [Escherichia coli B7A] gi|192929358|gb|EDV82966.1| DNA polymerase I [Escherichia coli E22] gi|192958716|gb|EDV89154.1| DNA polymerase I [Escherichia coli E110019] gi|194411506|gb|EDX27846.1| DNA polymerase I [Escherichia coli B171] gi|194420903|gb|EDX36943.1| DNA polymerase I [Escherichia coli 101-1] gi|209914595|dbj|BAG79669.1| DNA polymerase I [Escherichia coli SE11] gi|218354309|emb|CAV01020.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli 55989] gi|218363191|emb|CAR00833.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli IAI1] gi|238860827|gb|ACR62825.1| DNA polymerase I [Escherichia coli BW2952] gi|242379401|emb|CAQ34215.1| DNA polymerase I, 5'--> 3' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Escherichia coli BL21(DE3)] gi|253326546|gb|ACT31148.1| DNA polymerase I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975716|gb|ACT41387.1| DNA polymerase I [Escherichia coli B str. REL606] gi|253979872|gb|ACT45542.1| DNA polymerase I [Escherichia coli BL21(DE3)] gi|260451301|gb|ACX41723.1| DNA polymerase I [Escherichia coli DH1] gi|291321385|gb|EFE60824.1| DNA polymerase I [Escherichia coli B088] gi|299879003|gb|EFI87214.1| DNA-directed DNA polymerase [Escherichia coli MS 196-1] gi|300315036|gb|EFJ64820.1| DNA-directed DNA polymerase [Escherichia coli MS 175-1] gi|300413850|gb|EFJ97160.1| DNA-directed DNA polymerase [Escherichia coli MS 115-1] gi|300452272|gb|EFK15892.1| DNA-directed DNA polymerase [Escherichia coli MS 116-1] gi|300523745|gb|EFK44814.1| DNA-directed DNA polymerase [Escherichia coli MS 119-7] gi|300528128|gb|EFK49190.1| DNA-directed DNA polymerase [Escherichia coli MS 107-1] gi|301073504|gb|EFK88310.1| DNA-directed DNA polymerase [Escherichia coli MS 146-1] gi|308118587|gb|EFO55849.1| DNA-directed DNA polymerase [Escherichia coli MS 145-7] gi|315138432|dbj|BAJ45591.1| DNA polymerase I [Escherichia coli DH1] gi|320174864|gb|EFW49985.1| DNA polymerase I [Shigella dysenteriae CDC 74-1112] gi|323161077|gb|EFZ46995.1| DNA polymerase I [Escherichia coli E128010] gi|323174273|gb|EFZ59900.1| DNA polymerase I [Escherichia coli LT-68] gi|323189713|gb|EFZ74992.1| DNA polymerase I [Escherichia coli RN587/1] gi|323939084|gb|EGB35300.1| DNA polymerase I [Escherichia coli E482] gi|323959369|gb|EGB55030.1| DNA polymerase I [Escherichia coli H489] gi|323969730|gb|EGB65013.1| DNA polymerase I [Escherichia coli TA007] gi|324019768|gb|EGB88987.1| DNA-directed DNA polymerase [Escherichia coli MS 117-3] gi|331036054|gb|EGI08290.1| DNA polymerase I (POL I) [Escherichia coli H736] gi|331046645|gb|EGI18730.1| DNA polymerase I (POL I) [Escherichia coli M718] gi|331061960|gb|EGI33883.1| DNA polymerase I (POL I) [Escherichia coli TA271] gi|331067381|gb|EGI38786.1| DNA polymerase I (POL I) [Escherichia coli TA280] gi|331072296|gb|EGI43629.1| DNA polymerase I (POL I) [Escherichia coli H591] gi|332105090|gb|EGJ08436.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Shigella sp. D9] Length = 928 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|324111949|gb|EGC05929.1| DNA polymerase I [Escherichia fergusonii B253] Length = 928 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLM 904 >gi|323964211|gb|EGB59694.1| DNA polymerase I [Escherichia coli M863] Length = 928 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLM 904 >gi|318603742|emb|CBY25240.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica Y11] Length = 932 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 197/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L++ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++KV+ Sbjct: 694 QAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 NEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909 >gi|91213409|ref|YP_543395.1| DNA polymerase I [Escherichia coli UTI89] gi|117626137|ref|YP_859460.1| DNA polymerase I [Escherichia coli APEC O1] gi|218560939|ref|YP_002393852.1| DNA polymerase I [Escherichia coli S88] gi|237702893|ref|ZP_04533374.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|91074983|gb|ABE09864.1| DNA polymerase I [Escherichia coli UTI89] gi|115515261|gb|ABJ03336.1| DNA polymerase I [Escherichia coli APEC O1] gi|218367708|emb|CAR05497.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli S88] gi|226902830|gb|EEH89089.1| DNA polymerase I [Escherichia sp. 3_2_53FAA] gi|294492133|gb|ADE90889.1| DNA polymerase I [Escherichia coli IHE3034] gi|307628940|gb|ADN73244.1| DNA polymerase I [Escherichia coli UM146] gi|315289553|gb|EFU48946.1| DNA-directed DNA polymerase [Escherichia coli MS 110-3] gi|323949358|gb|EGB45247.1| DNA polymerase I [Escherichia coli H252] Length = 928 Score = 301 bits (771), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|123440424|ref|YP_001004418.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122087385|emb|CAL10166.1| DNA polymerase I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 932 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 197/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L++ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++KV+ Sbjct: 694 QAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 NEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909 >gi|291285274|ref|YP_003502092.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] gi|290765147|gb|ADD59108.1| DNA polymerase I [Escherichia coli O55:H7 str. CB9615] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/590 (18%), Positives = 199/590 (33%), Gaps = 118/590 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQSYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQ 533 + + GTA +++K+ AW Q +++ + + V Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889 Score = 40.5 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLM 904 >gi|156936143|ref|YP_001440059.1| DNA polymerase I [Cronobacter sakazakii ATCC BAA-894] gi|156534397|gb|ABU79223.1| hypothetical protein ESA_04040 [Cronobacter sakazakii ATCC BAA-894] Length = 927 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 111/614 (18%), Positives = 212/614 (34%), Gaps = 119/614 (19%) Query: 5 FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 +D ET S L + G+ AY A+ + D P +L + + Sbjct: 352 AVDTETDSLDNLTANLVGISFATEPGLAAY------IPVAHDYLDAPDQL----SRDRVL 401 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNAC 113 L L DE+++ V N F+R + + GI++ + T + + + Sbjct: 402 ELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGIAF-DTMLESYILDSVSGRHDMDS 459 Query: 114 LALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ + +H T E GK F + + + G Y D + Sbjct: 460 LSSRWLKHTTITFEQIAGKGKNQLTFNQIDL----------------EQAGRYAAEDADV 503 Query: 170 TRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ + IA + Sbjct: 504 TLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLT 563 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L++ ++ S T L+ LF GI + + G S S + +LA D Sbjct: 564 ELEQKAHEIAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYP 621 Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L ++ + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 622 LPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP- 679 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA +V AD + IE R++A + Sbjct: 680 -----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 716 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448 + + + AFA G+DI+ T A+ F P++ VS EQR K + L Y A + Sbjct: 717 SRDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQL 776 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------------- 489 + + + + + + ++ + Sbjct: 777 NIPRKESQKYMDLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRA 836 Query: 490 --PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVV-QEGGSISA 540 A+ + GTA +++K+A W K Q +++ + + V ++ + Sbjct: 837 GAERAAINAPMQGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVFEVHKDDVEAVS 896 Query: 541 RRVANVPRLVMRRH 554 +++ + M+ Sbjct: 897 QKIHELMENSMQLD 910 Score = 40.5 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M + +++ VHDE+V E +V + LM Sbjct: 848 QGTAADIIKRAMIAVDGWLQKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELM 903 >gi|15804448|ref|NP_290488.1| DNA polymerase I [Escherichia coli O157:H7 EDL933] gi|15834040|ref|NP_312813.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|168755528|ref|ZP_02780535.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|168768145|ref|ZP_02793152.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|168780763|ref|ZP_02805770.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|208808881|ref|ZP_03251218.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208812650|ref|ZP_03253979.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208818813|ref|ZP_03259133.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209400301|ref|YP_002273378.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|217325868|ref|ZP_03441952.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|254039074|ref|ZP_04873124.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254795854|ref|YP_003080691.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|261223490|ref|ZP_05937771.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK2000] gi|261257253|ref|ZP_05949786.1| DNA polymerase I [Escherichia coli O157:H7 str. FRIK966] gi|12518742|gb|AAG59052.1|AE005617_1 DNA polymerase I [Escherichia coli O157:H7 str. EDL933] gi|13364262|dbj|BAB38209.1| DNA polymerase I [Escherichia coli O157:H7 str. Sakai] gi|189001592|gb|EDU70578.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4076] gi|189357227|gb|EDU75646.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4401] gi|189362585|gb|EDU81004.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4486] gi|208728682|gb|EDZ78283.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4206] gi|208733927|gb|EDZ82614.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4045] gi|208738936|gb|EDZ86618.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4042] gi|209161701|gb|ACI39134.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4115] gi|209752838|gb|ACI74726.1| essential GTPase for cell cycle [Escherichia coli] gi|209752840|gb|ACI74727.1| essential GTPase for cell cycle [Escherichia coli] gi|209752842|gb|ACI74728.1| essential GTPase for cell cycle [Escherichia coli] gi|209752844|gb|ACI74729.1| essential GTPase for cell cycle [Escherichia coli] gi|209752846|gb|ACI74730.1| essential GTPase for cell cycle [Escherichia coli] gi|217322089|gb|EEC30513.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14588] gi|226838510|gb|EEH70539.1| DNA polymerase I [Escherichia sp. 1_1_43] gi|254595254|gb|ACT74615.1| DNA polymerase I [Escherichia coli O157:H7 str. TW14359] gi|309704289|emb|CBJ03638.1| DNA polymerase I [Escherichia coli ETEC H10407] gi|320191047|gb|EFW65697.1| DNA polymerase I [Escherichia coli O157:H7 str. EC1212] gi|320644589|gb|EFX13643.1| DNA polymerase I [Escherichia coli O157:H- str. 493-89] gi|320655220|gb|EFX23166.1| DNA polymerase I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320660846|gb|EFX28292.1| DNA polymerase I [Escherichia coli O55:H7 str. USDA 5905] gi|320666006|gb|EFX33025.1| DNA polymerase I [Escherichia coli O157:H7 str. LSU-61] gi|323934350|gb|EGB30763.1| DNA polymerase I [Escherichia coli E1520] gi|326338135|gb|EGD61965.1| DNA polymerase I [Escherichia coli O157:H7 str. 1044] gi|326342571|gb|EGD66344.1| DNA polymerase I [Escherichia coli O157:H7 str. 1125] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/590 (18%), Positives = 199/590 (33%), Gaps = 118/590 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQ 533 + + GTA +++K+ AW Q +++ + + V Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889 Score = 40.5 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLM 904 >gi|325499168|gb|EGC97027.1| DNA polymerase I [Escherichia fergusonii ECD227] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKNKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLM 904 >gi|331660412|ref|ZP_08361346.1| DNA polymerase I (POL I) [Escherichia coli TA206] gi|315300272|gb|EFU59508.1| DNA-directed DNA polymerase [Escherichia coli MS 16-3] gi|331052361|gb|EGI24398.1| DNA polymerase I (POL I) [Escherichia coli TA206] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|320649913|gb|EFX18421.1| DNA polymerase I [Escherichia coli O157:H- str. H 2687] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/590 (18%), Positives = 199/590 (33%), Gaps = 118/590 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQ 533 + + GTA +++K+ AW Q +++ + + V Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 889 Score = 40.5 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLM 904 >gi|229508387|ref|ZP_04397891.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229508932|ref|ZP_04398422.1| DNA polymerase I [Vibrio cholerae B33] gi|229517046|ref|ZP_04406492.1| DNA polymerase I [Vibrio cholerae RC9] gi|229606661|ref|YP_002877309.1| DNA polymerase I [Vibrio cholerae MJ-1236] gi|229346109|gb|EEO11081.1| DNA polymerase I [Vibrio cholerae RC9] gi|229354049|gb|EEO18982.1| DNA polymerase I [Vibrio cholerae B33] gi|229354660|gb|EEO19582.1| DNA polymerase I [Vibrio cholerae BX 330286] gi|229369316|gb|ACQ59739.1| DNA polymerase I [Vibrio cholerae MJ-1236] Length = 906 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 357 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 469 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 514 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L+++ +L S L+ LF + Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 573 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 632 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868 >gi|215489197|ref|YP_002331628.1| DNA polymerase I [Escherichia coli O127:H6 str. E2348/69] gi|312969394|ref|ZP_07783596.1| DNA polymerase I [Escherichia coli 2362-75] gi|215267269|emb|CAS11718.1| fused DNA polymerase I 5'->3' exonuclease/3'->5'polymerase/3'->5' exonuclease [Escherichia coli O127:H6 str. E2348/69] gi|312285941|gb|EFR13859.1| DNA polymerase I [Escherichia coli 2362-75] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLGYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|218692150|ref|YP_002400362.1| DNA polymerase I [Escherichia coli ED1a] gi|218429714|emb|CAV18034.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli ED1a] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.5 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|126463449|ref|YP_001044563.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] gi|126105113|gb|ABN77791.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17029] Length = 937 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 99/585 (16%), Positives = 189/585 (32%), Gaps = 87/585 (14%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPV-----KLWDRTEQSAM 53 + ID ET S L + + A A + + + D+ Sbjct: 351 HVAIDTETTSLDEMRAELVGISLCVEAGAACYIPLGHRAGGGDLFGASELVADQMPLGLA 410 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 S L L DE+++ + N ++ + + GI + A G + Sbjct: 411 LSMLKPVLEDESILKIGQNMKYDAKILARH-GIRVAPIDDTMLMSYAMHAGRHGHGMDEL 469 Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDV 167 T + GK+ I F + ++ V + W+LF R Sbjct: 470 CDTYLGHKPIAIKTLLGSGKSQIT-FDRVPVEQAVCYAAEDADVTFRLWKLFKPQLHRAR 528 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 T +++ L ER L + + G ++D D + ++ AQ+ L+ +I L Sbjct: 529 VTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAGLEAEIHAL 580 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281 G + L LF G+ + + LA + +L+ Sbjct: 581 AGGPF-NVGSPKQLGEILFEKMGLPGGQKGKNG-AWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S + L E + GR+ + GA+ TGR + QN+P + Sbjct: 639 RQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS------ 691 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A GK LV D + IE R+LA IA + Sbjct: 692 ------------------EEGRRIREAFVAPPGKLLVSLDYSQIELRILAHIADIPALKQ 733 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T ++ FN P++ + R K + + Y G A+ + + Sbjct: 734 AFREGHDIHAMTASEMFNVPLEGMDPMIRRQAKAINFGVIYGISGFGLARNLRIPRADAQ 793 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKD 496 + ++ + + D + + + A+ Sbjct: 794 GFIDRYFERFPGIRGYMDETISFAKANGHVETLFGRRINTPEINAKGPGAGFARRAAINA 853 Query: 497 KLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 + GTA +++++A + + + + + V+E + Sbjct: 854 PIQGTAADVIRRAMIRMPKAIRGMPATMLLQVHDELLFEVEEEAA 898 >gi|222035576|emb|CAP78321.1| DNA polymerase I [Escherichia coli LF82] gi|312948433|gb|ADR29260.1| DNA polymerase I [Escherichia coli O83:H1 str. NRG 857C] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.5 bits (93), Expect = 0.84, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|327483012|gb|AEA77419.1| DNA polymerase I [Vibrio cholerae LMA3894-4] Length = 934 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE+ V N ++ + + G++ Sbjct: 385 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 542 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L+++ +L S L+ LF + Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 601 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 660 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896 >gi|238750767|ref|ZP_04612265.1| DNA polymerase I [Yersinia rohdei ATCC 43380] gi|238710911|gb|EEQ03131.1| DNA polymerase I [Yersinia rohdei ATCC 43380] Length = 932 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 102/576 (17%), Positives = 194/576 (33%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + L L DE + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPAQL----DRQWVLDTLKPLLEDEKALKVGQNLKFDQSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P D E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQDIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + +A +L++ +L + L++ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELAIRLDELEKQAHELAGEPFNLA-SPKQLQVILYEKQQL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVIIEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ Sbjct: 694 QAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEGVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------ 475 EQR K + L Y A+ + + + + + Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 476 ---------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 S + + A+ + GTA +++K+A A Sbjct: 814 DQGYVTTLDGRRLYLPDINSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 874 SAPLVRVIMQVHDELVFEVHETVLESAEQKIRELME 909 >gi|194433216|ref|ZP_03065497.1| DNA polymerase I [Shigella dysenteriae 1012] gi|194418500|gb|EDX34588.1| DNA polymerase I [Shigella dysenteriae 1012] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 109/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + KL Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAKL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|323493194|ref|ZP_08098324.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] gi|323312541|gb|EGA65675.1| DNA polymerase I [Vibrio brasiliensis LMG 20546] Length = 931 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 112/572 (19%), Positives = 195/572 (34%), Gaps = 103/572 (18%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 GV AY A+ + D P +L ++ + L L D+T V N ++ + Sbjct: 380 GVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDTQAKVGQNLKYDASV 429 Query: 80 FKKTLGIDIPSKRW-ICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137 + DI K T + + N + LAL F +H E Sbjct: 430 LARY---DIELKGIKHDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ--------- 477 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERD 186 I N ++ Y D + T L RL+ D E Sbjct: 478 --IAGKGKKQLTFNQIEL-DEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQDIEVP 534 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + I G ID + + IAQ +L++ ++ + + L+ LF Sbjct: 535 LVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELEQKAYEIAEQEF-NMNSPKQLQALLF 593 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS- 300 G+ ++ + S + + +LA D L +L + KL + L + ++ Sbjct: 594 EKMGLPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINS 652 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 GR+ + + TGR S QN+P + Sbjct: 653 ETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEE 687 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ T Sbjct: 688 GRRIRQAFVAPHGYKIMAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGTT 747 Query: 421 IDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDW 475 ID+VS EQR K + L Y AK + ++ + ED Sbjct: 748 IDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYMNKYFERYPGVMQYMEDT 807 Query: 476 EQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ 515 A + +++ + A+ + GTA +++KKA Q Sbjct: 808 RSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQ 867 Query: 516 -------GVLQLWKDLTEGFACVVQEGGSISA 540 G ++L + + VQE Sbjct: 868 WIQAEGDGRVKLLMQVHDELVFEVQESALTEI 899 >gi|260599983|ref|YP_003212554.1| DNA polymerase I [Cronobacter turicensis z3032] gi|260219160|emb|CBA34515.1| DNA polymerase I [Cronobacter turicensis z3032] Length = 966 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 111/614 (18%), Positives = 212/614 (34%), Gaps = 119/614 (19%) Query: 5 FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 +D ET S L + G+ AY A+ + D P +L + + Sbjct: 391 AVDTETDSLDNLTANLVGISFATEPGLAAY------IPVAHDYLDAPDQLP----RDRVL 440 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNAC 113 L L DE+++ V N F+R + + GI++ + T + + + Sbjct: 441 ELLKPLLEDESLVKVGQNLKFDRGILQNY-GIELRGIVF-DTMLESYILDSVSGRHDMDS 498 Query: 114 LALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ + +H T E GK F + + + G Y D + Sbjct: 499 LSSRWLKHTTITFEQIAGKGKNQLTFNQIDL----------------EQAGRYAAEDADV 542 Query: 170 TRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L ++ P E L + I G +ID ++ + IA + Sbjct: 543 TLQLHLKMWPKLQQHKGPLNIFEHIEMPLVPVLSRIERNGVKIDPAVLHAHSQEIALKLA 602 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L++ ++ S T L+ LF GI + + G S S + +LA D Sbjct: 603 ELEQKAHEIAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYP 660 Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L ++ + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 661 LPKVILQYRGLAKLKSTYTDKLPQMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP- 718 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R IA +V AD + IE R++A + Sbjct: 719 -----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHL 755 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVF 448 + + + AFA G+DI+ T A+ F P++ VS EQR K + L Y A + Sbjct: 756 SRDKGLLSAFAEGKDIHRATAAEVFGLPLESVSNEQRRSAKAINFGLIYGMSAFGLSRQL 815 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------------- 489 + + + + + + ++ + Sbjct: 816 NIPRKESQKYMDLYFERYPGVLEYMERTRKQAKEQGYVETLDGRRLYLPDINASNAARRA 875 Query: 490 --PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVV-QEGGSISA 540 A+ + GTA +++K+A W K Q +++ + + V ++ + Sbjct: 876 GAERAAINAPMQGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVFEVHKDDVEAVS 935 Query: 541 RRVANVPRLVMRRH 554 +++ + M+ Sbjct: 936 QKIHELMENSMQLD 949 Score = 40.5 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M + +++ VHDE+V E +V + LM Sbjct: 887 QGTAADIIKRAMIAVDGWLEKEQPRVKMIMQVHDELVFEVHKDDVEAVSQKIHELM 942 >gi|153820094|ref|ZP_01972761.1| DNA polymerase I [Vibrio cholerae NCTC 8457] gi|126509364|gb|EAZ71958.1| DNA polymerase I [Vibrio cholerae NCTC 8457] Length = 851 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 106/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 302 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 356 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 357 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 413 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 414 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 459 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L+++ +L S L+ LF + Sbjct: 460 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 518 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 519 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 577 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 578 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 612 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 613 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 672 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 673 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 732 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 733 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 792 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 793 GDGRVKLLMQVHDELVFEVKE 813 >gi|293413298|ref|ZP_06655959.1| DNA polymerase I [Escherichia coli B354] gi|291468046|gb|EFF10544.1| DNA polymerase I [Escherichia coli B354] Length = 928 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.5 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|261250089|ref|ZP_05942666.1| DNA polymerase I [Vibrio orientalis CIP 102891] gi|260939593|gb|EEX95578.1| DNA polymerase I [Vibrio orientalis CIP 102891] Length = 931 Score = 300 bits (769), Expect = 3e-79, Method: Composition-based stats. Identities = 108/574 (18%), Positives = 198/574 (34%), Gaps = 101/574 (17%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + GV AY A+ + D P +L E+ + L L D+ V N ++ Sbjct: 377 TEEGVAAY------VPVAHDYLDAPAQL----ERDWVLEQLKPILEDDAQAKVGQNLKYD 426 Query: 77 RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + GI++ + T + + N + LAL F +H E Sbjct: 427 ASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ------- 477 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184 I N ++ Y D + T L RL+ + E Sbjct: 478 ----IAGKGKKQLTFNQIEL-DEASPYAAEDADVTLRLHNRLMENIDQDEKLKAIYQEIE 532 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + I G ID + + IAQ +L++ ++ + + L+ Sbjct: 533 VPLVPVLSRIERTGVLIDDMKLGAQSQEIAQRLDELEQQAYEIAEQEF-NMNSPKQLQAL 591 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299 LF G+ ++ + S + + +LA D L +L + KL + L + + Sbjct: 592 LFEKMGLPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMI 650 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 651 NPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 685 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R IA +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ Sbjct: 686 EEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIMG 745 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 T ID+VS EQR K + L Y AK + ++ + + + Sbjct: 746 TTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYMNKYFERYPGVMQYME 805 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW--- 510 + +S + + A+ + GTA +++KKA Sbjct: 806 DTRSTASEQGYVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 865 Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + + G ++L + + VQE Sbjct: 866 DEWIQTEGDGRVKLLMQVHDELVFEVQESALTEI 899 >gi|320639201|gb|EFX08828.1| DNA polymerase I [Escherichia coli O157:H7 str. G5101] Length = 916 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 108/590 (18%), Positives = 199/590 (33%), Gaps = 118/590 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 343 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 392 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 393 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 450 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 451 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 494 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 495 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 554 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 555 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 612 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 613 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 668 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 669 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 707 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 708 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 767 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 768 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 827 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQ 533 + + GTA +++K+ AW Q +++ + + V Sbjct: 828 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVH 877 Score = 40.5 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 837 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHRDDVDAVAKQIHQLM 892 >gi|300931708|ref|ZP_07147013.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] gi|300460499|gb|EFK23992.1| DNA-directed DNA polymerase [Escherichia coli MS 187-1] Length = 928 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 107/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + +++ T D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAT----------------EDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|270158547|ref|ZP_06187204.1| DNA polymerase I [Legionella longbeachae D-4968] gi|289166622|ref|YP_003456760.1| DNA polymerase I [Legionella longbeachae NSW150] gi|269990572|gb|EEZ96826.1| DNA polymerase I [Legionella longbeachae D-4968] gi|288859795|emb|CBJ13776.1| DNA polymerase I [Legionella longbeachae NSW150] Length = 894 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 107/604 (17%), Positives = 206/604 (34%), Gaps = 119/604 (19%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP----SDLLQYL 61 ID ET S + A I + A ++ T P ++L L Sbjct: 323 IDTETTSLDVMM----------AEIVGISLAIEEGKAAYIPLTHDDGSPQLLREEVLTAL 372 Query: 62 ----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLAL 116 + T+ + N ++ + + GI + + T + + LAL Sbjct: 373 NPILENPTIKKIGQNLKYDYSVLRNH-GITLKGI-YYDTMLESYVLNSGSGRHDMDSLAL 430 Query: 117 NFSEHLTKMEE---GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H T E GK RF + ++ G Y D + T + Sbjct: 431 KYLGHKTISYEEIAGKGAKQLRFDQIPVEKA----------------GAYAAEDADITLQ 474 Query: 173 LFKRLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L +L PL + E L + + G ID + + E + + + L+E+ Sbjct: 475 LHHKLYPLIPESVHHVFGNIEMPLVTVLADMERMGVLIDSATLKQHGERLKERIRTLEEE 534 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L+ LF + ++ + T + + + + +LA D L + Sbjct: 535 ALHLAGKPF-NLNSPKQLQEILFDSHKLPIIAKTP-TGQPSTAEAVLQELAYDYRLAAVI 592 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L + ++ R+ + + TGR S QN+P + Sbjct: 593 LEYRSLTKLVSTYIDALPKKINPKTNRVHTSYN-QAVTATGRLSSSEPNLQNIPIRS--- 648 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ IA ++ AD + IE R++A ++ ++ Sbjct: 649 ---------------------EEGRLIRTAFIAPEDNIILAADYSQIELRIMAHLSQDEN 687 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFANG D++ T ++ F P+++++ EQR K + L Y AK Sbjct: 688 LLKAFANGWDVHAATASEIFQIPLEEINNEQRRRAKAINFGLIYGMSSFGLAKQIGVERQ 747 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEF 492 + + Q + + + ++HH L Q Sbjct: 748 DAQYYIDTYFQRYPKVLEYMNRTRQQAHHQGYVETLFGRRLYLPEINARNLMRQKAAERT 807 Query: 493 AVKDKLIGTACELVKKA------WRAKHQG-----VLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K A W+ H+ ++Q+ +L E R Sbjct: 808 AINAPMQGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHDELVFEVNKNAIESSKEMIR 867 Query: 542 RVAN 545 + Sbjct: 868 ELME 871 Score = 42.0 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 8/57 (14%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 Q + DI+ M K +++ VHDE+V E S + LM Sbjct: 814 QGTAADIIKNAMICIAKWQNSHEKPPARMIMQVHDELVFEVNKNAIESSKEMIRELM 870 >gi|78484390|ref|YP_390315.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] gi|78362676|gb|ABB40641.1| DNA polymerase I [Thiomicrospira crunogena XCL-2] Length = 939 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 117/623 (18%), Positives = 226/623 (36%), Gaps = 116/623 (18%) Query: 5 FIDIETRS--PQPLPKVGV-WAYAEQ--------AVITLCAYAWDDEPVKLWDRTEQSAM 53 ID ET S VGV +AYAE+ A + +D P +L + Sbjct: 356 AIDTETTSLNAMEAKIVGVSFAYAEKKDQAWQNFAAYVPLTHDYDGAPEQLPI----QEV 411 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNA 112 + L L + + V N ++ +FK GI++ + T + + N + + Sbjct: 412 LAKLKPLLENPAIKKVGQNFKYDWHIFKNA-GIEVQGMAY-DTMLESYCFNSVATRHNMD 469 Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL + H T K G + F + +++ Y D + Sbjct: 470 DLALTYLNHSTIHFKDIAGTGKKQKTFNQIELETA----------------SPYAAEDAD 513 Query: 169 ATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L + L+P + E L + + G ID ++ + Q+ Sbjct: 514 ITLQLHQTLLPKLQAEPTLYKVFEEIEMPLMPVLAKMERNGVLIDRQMLADQSYELGQKL 573 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD- 276 +L++ + + + L+ LF + +V + S + + QLA+D Sbjct: 574 TELEQKAHLIAGTPF-NLNSSKQLQEVLFERLELPIVKKTPKGQPST-AEPVLVQLAEDG 631 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + L ++ KL ++L + ++ GR+ + Q + TGR S QN+ Sbjct: 632 HEMPNLILEYRSLAKLKSTYTDSLPKQINQQTGRVHTSYQ-QAVASTGRLSSTEPNLQNI 690 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R IA G +L+ +D + IE R++A Sbjct: 691 PIRS------------------------AEGRRIRQAFIAQPGYRLMASDYSQIELRIMA 726 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 ++G+ +KAFA G+DI+ T A+ FN P+++V+ EQR K + L Y AK Sbjct: 727 HLSGDASLLKAFAEGKDIHQATAAEIFNMPLEEVTSEQRRSAKAVNFGLIYGMSAFGLAK 786 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485 + + + + + + + + Sbjct: 787 QLNISRGLAQEYINLYFARYPGVANYMESTKENAKQTGYVETLMGRRLYLPDINAKNGQL 846 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + A+ + GTA +++K A +Q W D T C ++ + V Sbjct: 847 RQYAERTAINAPMQGTAADIIKTAMVK-----MQQWLDQT---PCDIKMLMQVHDELVFE 898 Query: 546 VPRLVMRRHKRDVHIVLPSSRRL 568 V M + ++++ ++ ++ +L Sbjct: 899 VAEADMDQARKEIKTIMEAALKL 921 Score = 44.3 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 8/85 (9%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKN----ATKNGYDI--VLT 627 G YL ++ + R Y + N +Q + DI+ M + DI ++ Sbjct: 831 GRRLYLPDINAKNGQLRQYAERTAINAPMQGTAADIIKTAMVKMQQWLDQTPCDIKMLMQ 890 Query: 628 VHDEIVSETPDTPYFSV-GTLCSLM 651 VHDE+V E + + ++M Sbjct: 891 VHDELVFEVAEADMDQARKEIKTIM 915 >gi|229527149|ref|ZP_04416543.1| DNA polymerase I [Vibrio cholerae 12129(1)] gi|229335380|gb|EEO00863.1| DNA polymerase I [Vibrio cholerae 12129(1)] Length = 906 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 198/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE+ V N ++ + + G++ Sbjct: 357 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 411 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 412 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 468 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 469 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVL 514 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L+++ +L S L+ LF + Sbjct: 515 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKL 573 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 574 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRV 632 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 633 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 667 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 668 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 727 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 728 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 787 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 788 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 847 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 848 GDGRVKLLMQVHDELVFEVKE 868 >gi|126734956|ref|ZP_01750702.1| DNA polymerase I [Roseobacter sp. CCS2] gi|126715511|gb|EBA12376.1| DNA polymerase I [Roseobacter sp. CCS2] Length = 938 Score = 300 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 93/523 (17%), Positives = 184/523 (35%), Gaps = 78/523 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L+D V+ + N ++ +F + L ID+ A G + + Sbjct: 411 LKPVLQDPAVIKIGQNMKYDAKIFAR-LDIDVAPIDDTMLMSYAMNAGKHNHGMDTLSER 469 Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171 + GK+ I D+ Y A+ ++ WQ F + T Sbjct: 470 YLGHTPIPIKPLLGSGKSAITFDRVPVDDAVKYAAEDADITLRLWQQFKPQLHMNRVTT- 528 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +++ + ER L + + G ++D D + ++ AQ+ L+++I ++ Sbjct: 529 -VYETM------ERPLVPVLAQMERHGIKVDRDTLSRMSNAFAQKMAGLEDEIQEMAGRP 581 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+++ D + T + LA + R Sbjct: 582 F-NVGSPKQLGEILFDEMGLEMPDGKKPSTGKTGAYSTGADVLEDLATLHDMPRRILDWR 640 Query: 288 AILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L E ++ GR+ + GA+ TGR + QN+P + Sbjct: 641 QLSKLKSTYTDALQEHINAETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS------- 692 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A +GK +V D + IE R+LA IAG D +A Sbjct: 693 -----------------EEGRRIREAFVAEDGKVIVSLDYSQIELRILAHIAGIDALKQA 735 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +G DI+ T ++ F+ P+D+++ + R K + + Y G A+ + Sbjct: 736 FLDGIDIHAMTASEMFDVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRGEAQG 795 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDK 497 + ++ + + D A + A+ Sbjct: 796 FIDRYFERFPGIRKYMDDTVAFAKENSYVQTLFGRKINTPEINAKGPHAGFAKRAAINAP 855 Query: 498 LIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGG 536 + GTA +++++A + ++ + + V+EG Sbjct: 856 IQGTAADVIRRAMIRMPDAIAGLPAKMLLQVHDELIFEVEEGA 898 >gi|170683498|ref|YP_001746191.1| DNA polymerase I [Escherichia coli SMS-3-5] gi|170521216|gb|ACB19394.1| DNA polymerase I [Escherichia coli SMS-3-5] Length = 928 Score = 300 bits (768), Expect = 4e-79, Method: Composition-based stats. Identities = 107/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L +E + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLENEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|311281673|ref|YP_003943904.1| DNA polymerase I [Enterobacter cloacae SCF1] gi|308750868|gb|ADO50620.1| DNA polymerase I [Enterobacter cloacae SCF1] Length = 928 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 107/568 (18%), Positives = 192/568 (33%), Gaps = 108/568 (19%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 GV AY A+ + P ++ + L L DE + V N ++R + Sbjct: 378 GVAAY------VPVAHDYIGAPEQI----SRERALELLKPLLEDEKALKVGQNLKYDRGI 427 Query: 80 FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134 GI++ W T + + T + L+ + +H T E GK Sbjct: 428 LANY-GIELRGIAW-DTMLESYTLDSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLT 485 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------G 183 F + + + G Y D + T +L ++ P Sbjct: 486 FNQIDL----------------EQAGRYAAEDADVTLQLHLKMWPKLQKREGPLNVFRNI 529 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + I G +ID ++ K E I +L++ + S T L+ Sbjct: 530 EMPLVPVLSRIERNGVKIDPQVLQKHSEEITLRLAELEQKAHDIAGEPFNLS-STKQLQT 588 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298 LF GI + + G S S + +LA D L ++ + KL + L Sbjct: 589 ILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM 647 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 ++ GR+ + + TGR S QN+P Sbjct: 648 INPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VR 682 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R IA +V AD + IE R++A ++ + +KAFA G+DI+ T A+ F Sbjct: 683 NEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLKAFAEGKDIHRATAAEVF 742 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P++ VS EQR K + L Y A + + + + + Sbjct: 743 GLPLESVSAEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQKYMDLYFERYPGVLEYM 802 Query: 474 DWEQAESHHLWMQDQYP---------------------EFAVKDKLIGTACELVKK---- 508 + +A++ + A+ + GTA +++K+ Sbjct: 803 ERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAAAERAAINAPMQGTAADIIKRAMIA 862 Query: 509 --AWRAKHQGVLQLWKDLTEGFACVVQE 534 AW + Q +++ + + V + Sbjct: 863 VDAWLQEEQPRVRMIMQVHDELVFEVHK 890 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQEEQPRVRMIMQVHDELVFEVHKDALDAVSKKIHELM 904 >gi|320198938|gb|EFW73536.1| DNA polymerase I [Escherichia coli EC4100B] Length = 928 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDANVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|262404847|ref|ZP_06081401.1| DNA polymerase I [Vibrio sp. RC586] gi|262348931|gb|EEY98070.1| DNA polymerase I [Vibrio sp. RC586] Length = 938 Score = 300 bits (768), Expect = 5e-79, Method: Composition-based stats. Identities = 106/583 (18%), Positives = 200/583 (34%), Gaps = 109/583 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAV----ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V A A+ + D P +L ++ + + L L Sbjct: 364 DTETDSLDYMVANLVGVSCAVAEGEAAYIPVAHDYLDAPQQL----DREWVIAQLKPLLE 419 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 DE+ V N ++ + + G+++ R T + + N + LAL F +H Sbjct: 420 DESKAKVGQNLKYDASVIARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477 Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +GK + F + + Q +Y D + T L +R Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520 Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + PL + E L + I G I+ L+ + IA +L++ Sbjct: 521 ISPLIEQDSKLEQVYREIEMPLVPVLSRIERTGVMINDMLLSAQSQEIALRLDELEKKAY 580 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L S L+ LF + ++ + S + + +LA D L ++ Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 639 YRGLAKLKSTYTDKLPKMINPNTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A +G K++ D + IE R++A ++G+ + Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AF G+DI+ T A+ PI++VS EQR K + L Y AK Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + ++ + + + + S + + A+ Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGMRRKAAERAAI 853 Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530 + GTA +++KKA + + G ++L + + Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVF 896 >gi|262172869|ref|ZP_06040547.1| DNA polymerase I [Vibrio mimicus MB-451] gi|261893945|gb|EEY39931.1| DNA polymerase I [Vibrio mimicus MB-451] Length = 938 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 113/583 (19%), Positives = 209/583 (35%), Gaps = 109/583 (18%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + VGV +A AE +A A+ + D P +L +++ + + L L Sbjct: 364 DTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQL----DRAWVIAQLKPLLE 419 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 DE+ V N ++ + + G+++ R T + + N + LAL F +H Sbjct: 420 DESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477 Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +GK + F + + Q +Y D + T L +R Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520 Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + PL + E L + I G ID L+ + IA +L++ Sbjct: 521 ISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKAY 580 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L S L+ LF + ++ + S + + +LA D L ++ Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 639 YRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A +G K++ D + IE R++A ++G+ + Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AF G+DI+ T A+ PI++VS EQR K + L Y AK Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793 Query: 456 GLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFAV 494 + ++ + ED + +++ + A+ Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNGIRRKAAERAAI 853 Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530 + GTA +++KKA + + G ++L + + Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVF 896 >gi|153214860|ref|ZP_01949668.1| DNA polymerase I [Vibrio cholerae 1587] gi|153826297|ref|ZP_01978964.1| DNA polymerase I [Vibrio cholerae MZO-2] gi|124115103|gb|EAY33923.1| DNA polymerase I [Vibrio cholerae 1587] gi|149739965|gb|EDM54144.1| DNA polymerase I [Vibrio cholerae MZO-2] Length = 886 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 105/557 (18%), Positives = 198/557 (35%), Gaps = 95/557 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 337 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 391 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + R T + + N + LAL F +H E A + + + + Sbjct: 392 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGK-NQLTFNQI--- 446 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTIN 195 A + +Y D + T L +R+ PL + E L + I Sbjct: 447 --------ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIE 498 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ID L+ + IA +L+++ +L S L+ LF + ++ Sbjct: 499 RTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKLPVLQ 557 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309 + S + + +LA D L ++ + KL + L + ++ GR+ + Sbjct: 558 KTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 616 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R + Sbjct: 617 -HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFV 651 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS EQR Sbjct: 652 APHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQR 711 Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + L Y AK + ++ + + + Sbjct: 712 RRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGY 771 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQGV 517 + S + + A+ + GTA +++KKA + G Sbjct: 772 VETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGR 831 Query: 518 LQLWKDLTEGFACVVQE 534 ++L + + V+E Sbjct: 832 VKLLMQVHDELVFEVKE 848 >gi|262151175|ref|ZP_06028314.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] gi|262031069|gb|EEY49694.1| DNA polymerase I [Vibrio cholerae INDRE 91/1] Length = 890 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 105/557 (18%), Positives = 198/557 (35%), Gaps = 95/557 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E+ + + L L DE+ V N ++ + + G++ Sbjct: 341 AAYLPVAHDYLDAPQQL----ERDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 395 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + R T + + N + LAL F +H E A + + + + Sbjct: 396 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGK-NQLTFNQI--- 450 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTIN 195 A + +Y D + T L +R+ PL + E L + I Sbjct: 451 --------ALEEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEMPLVPVLSRIE 502 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ID L+ + IA +L+++ +L S L+ LF + ++ Sbjct: 503 RTGVMIDDMLLSAQSQEIALRLDQLEQNAYELAGQPFNLS-SPKQLQTILFEQMKLPVLQ 561 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309 + S + + +LA D L ++ + KL + L + ++ GR+ + Sbjct: 562 KTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY 620 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R + Sbjct: 621 -HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIRQAFV 655 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS EQR Sbjct: 656 APHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQR 715 Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + L Y AK + ++ + + + Sbjct: 716 RRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGY 775 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQGV 517 + S + + A+ + GTA +++KKA + G Sbjct: 776 VETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGR 835 Query: 518 LQLWKDLTEGFACVVQE 534 ++L + + V+E Sbjct: 836 VKLLMQVHDELVFEVKE 852 >gi|253987782|ref|YP_003039138.1| DNA polymerase I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638660|emb|CAR67279.1| dna polymerase I polA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779232|emb|CAQ82392.1| dna polymerase I polA [Photorhabdus asymbiotica] Length = 929 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 102/596 (17%), Positives = 202/596 (33%), Gaps = 100/596 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L + A A + + P +L ++ A+ + L L Sbjct: 354 DTETDSLDTLTANLVGMSFAITAGDAAYLPLGHDYLGAPEQL----DRDAVLAALKPLLE 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D ++ + N F+ + + GI++ + T + + + + + HL Sbjct: 410 DSNLLKIGQNIKFDCGVLVRY-GIELQGIAY-DTMLESYVLNSVAGMGRHDMDSLAERHL 467 Query: 123 TKMEEGKALIARFCKG--SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 IA K + + P + Y D + T +L + + P Sbjct: 468 NYKTTTFEEIAGKGKNQLTFNQVPV-----------EQAAMYAAEDADVTLQLHQVIWPQ 516 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L ++ + G I+ D++ + + IA +L+++ +L Sbjct: 517 LEKVPALEKVFLETEMPLIMVLSRMERAGVLINSDILAEHSKEIAVRLDELEKEAHELAG 576 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L+ LF + +V + G S + + +L L ++ + Sbjct: 577 EVFNLA-SPKQLQTILFEKLNLPVVKKTPGGAPST-NEEVLEELVDHHELPKVILEHRGL 634 Query: 290 LKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + V + T + TGR S QN+P Sbjct: 635 AKLKSTYTDKLPQMVHPLTKRVHTSYHQAVTATGRLSSRDPNLQNIP------------- 681 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IAS G +++ AD + IE R++A ++ + +KAFA Sbjct: 682 -----------VRNEEGRRIRQAFIASEGYRIMAADYSQIELRIMAHLSQDQGLLKAFAE 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460 G+DI+ T A+ F+ P+++V+ EQR K + L Y A + + Sbjct: 731 GQDIHRATAAEVFDVPLEQVTSEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRYMD 790 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 + + + + +S + + A+ + Sbjct: 791 LYFERYPGVLAYMERTREQAEEQGYVETLAGRRLYLPDIKSRNGTRRKAAEREAINAPMQ 850 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 GTA +++KKA A K + ++Q+ +L E R + Sbjct: 851 GTAADIIKKAMIAVDDWIISEAPKVRMIMQVHDELVFEVHESELENTEQKIRELME 906 >gi|300925951|ref|ZP_07141783.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] gi|300417979|gb|EFK01290.1| DNA-directed DNA polymerase [Escherichia coli MS 182-1] Length = 928 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 107/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + G A +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 38.9 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGPAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|254226589|ref|ZP_04920170.1| DNA polymerase I [Vibrio cholerae V51] gi|125620861|gb|EAZ49214.1| DNA polymerase I [Vibrio cholerae V51] Length = 930 Score = 300 bits (767), Expect = 6e-79, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 197/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE+ V N ++ + + G++ Sbjct: 381 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 435 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 436 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 492 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 493 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVL 538 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L++ +L S L+ LF + Sbjct: 539 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLS-SPKQLQTILFEQMKL 597 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 598 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRV 656 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 657 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 691 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 692 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 751 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 752 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 811 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 812 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 871 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 872 GDGRVKLLMQVHDELVFEVKE 892 >gi|258623132|ref|ZP_05718144.1| DNA polymerase I [Vibrio mimicus VM573] gi|258584615|gb|EEW09352.1| DNA polymerase I [Vibrio mimicus VM573] Length = 938 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 112/583 (19%), Positives = 207/583 (35%), Gaps = 109/583 (18%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + VGV +A AE +A A+ + D P +L ++ + + L L Sbjct: 364 DTETDSLDYMVANLVGVSFAVAEGEAAYIPVAHDYLDAPQQL----DRDWVIAQLKPLLE 419 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 DE+ V N ++ + + G+++ R T + + N + LAL F +H Sbjct: 420 DESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQH 477 Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +GK + F + + Q +Y D + T L +R Sbjct: 478 SCISFEQIAGKGKNQLT-FNQIDL----------------QEAAQYAAEDADVTLRLHQR 520 Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + PL + E L + I G ID L+ + IA +L++ Sbjct: 521 ISPLIEQDSKLAQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDELEKKAY 580 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L S L+ LF + ++ + S + + +LA D L ++ Sbjct: 581 ELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIE 638 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 639 YRGLAKLKSTYTDKLPKMINPNTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 689 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A +G K++ D + IE R++A ++G+ + Sbjct: 690 ----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALL 733 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AF G+DI+ T A+ PI++VS EQR K + L Y AK Sbjct: 734 DAFREGKDIHAATAAEIIGVPIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEA 793 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + ++ + + + + S + + A+ Sbjct: 794 QEYMDKYFERYPGVMQYMEDTRSRAAELGYVETIFGRRLHLPEITSRNAMRRKAAERAAI 853 Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530 + GTA +++KKA + + G ++L + + Sbjct: 854 NAPMQGTAADIIKKAMLLVDEWIQREGDGRVKLLMQVHDELVF 896 >gi|297581848|ref|ZP_06943769.1| DNA polymerase I [Vibrio cholerae RC385] gi|297533942|gb|EFH72782.1| DNA polymerase I [Vibrio cholerae RC385] Length = 934 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 105/561 (18%), Positives = 197/561 (35%), Gaps = 103/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE+ V N ++ + + G++ Sbjct: 385 AAYLPVAHDYLDAPQQL----DRDWVIAQLKPLLEDESKAKVGQNLKYDASVMARY-GVE 439 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + R T + + N + LAL F +H E GK F + ++ Sbjct: 440 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIAL-- 496 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + +Y D + T L +R+ PL + E L + Sbjct: 497 --------------EEAAQYAAEDADVTLRLHQRIHPLIEQDAKLEQVYREIEIPLVPVL 542 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID L+ + IA +L++ +L S L+ LF + Sbjct: 543 SRIERTGVMIDDMLLSAQSQEIALRLDQLEQKAYELAGQPFNLS-SPKQLQTILFEQMKL 601 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L ++ + KL + L + ++ GR+ Sbjct: 602 PVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGRV 660 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 661 HTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRIR 695 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ PID+VS Sbjct: 696 QAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVS 755 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK + ++ + + + Sbjct: 756 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAA 815 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + S + + A+ + GTA +++KKA + Sbjct: 816 QLGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIERE 875 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 G ++L + + V+E Sbjct: 876 GDGRVKLLMQVHDELVFEVKE 896 >gi|238794563|ref|ZP_04638171.1| DNA polymerase I [Yersinia intermedia ATCC 29909] gi|238726143|gb|EEQ17689.1| DNA polymerase I [Yersinia intermedia ATCC 29909] Length = 932 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 99/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GI+ Sbjct: 383 AAYLPLAHDYLDSPAQL----DRDWVLATLKPLLEDDKALKVGQNLKFDQSMLARY-GIE 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L+ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F TP++KV+ Sbjct: 694 QAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGTPLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLSIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 DQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909 >gi|269103720|ref|ZP_06156417.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] gi|268163618|gb|EEZ42114.1| DNA polymerase I [Photobacterium damselae subsp. damselae CIP 102761] Length = 923 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 109/569 (19%), Positives = 195/569 (34%), Gaps = 95/569 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D + N ++ + + GI+ Sbjct: 374 AAYVPVAHDYLDAPEQL----DRDWVLAQLKPLLEDPNQAKIGQNLKYDASVIARY-GIE 428 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + ++ T + + N + LAL + EH E IA KG + D Sbjct: 429 MQGIKY-DTMLESYVYNSVVGRHDMDSLALRYLEHKNISFE---EIAGKGKGQLTFNQID 484 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTIN 195 + G Y D + T L L P SD E L + + Sbjct: 485 ---------LEQAGPYAAEDADITLRLHNALYPKVSADEKLLHVFSDIEMPLVPVLSRME 535 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ID + + IAQ +L++ ++ D S L+ LF G+ ++ Sbjct: 536 RTGVLIDSMKLSAQSQEIAQRLDELEKRAFEIADQEFNLS-SPKQLQAILFEKMGLPVLK 594 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309 + S + + +LA D L +L + KL + L + V+ GR+ + Sbjct: 595 KTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSY 653 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R I Sbjct: 654 -HQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIRQAFI 688 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ P+D+VS EQR Sbjct: 689 APQGYKVLAIDYSQIELRIMAHLSGDKALLDAFCHGKDIHAATAAEILGLPLDQVSSEQR 748 Query: 430 AIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFSQNVKSTSTFEDW---------- 475 K + L Y A + + + + + Sbjct: 749 RRAKAINFGLIYGMSAFGLAKQLDMGRGEAQEYMNTYFERYPGVLEYMETTRTVASEQGY 808 Query: 476 -----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR-------AKHQGV 517 +S + + A+ + GTA +++K+A + G Sbjct: 809 VETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKRAMVLVDEWIGQQESGR 868 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANV 546 ++L + + VQE S + Sbjct: 869 VRLLMQVHDELVFEVQESEIESVAQEIKT 897 >gi|254508258|ref|ZP_05120381.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] gi|219548775|gb|EED25777.1| DNA polymerase I superfamily protein [Vibrio parahaemolyticus 16] Length = 931 Score = 300 bits (767), Expect = 7e-79, Method: Composition-based stats. Identities = 110/574 (19%), Positives = 199/574 (34%), Gaps = 101/574 (17%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + GV AY A+ + D P +L ++ + + L L D+T V N ++ Sbjct: 377 TEEGVAAY------VPVAHDYLDAPQQL----DRDWVLAQLKPILEDDTQAKVGQNLKYD 426 Query: 77 RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + I++ + T + + N + LAL F +H E Sbjct: 427 ASVLARY-NIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ------- 477 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184 I N ++ Y D + T L RL+ + E Sbjct: 478 ----IAGKGKKQLTFNQIEL-DQASPYAAEDADVTLRLHNRLMANIEKDEQLKAIYEEIE 532 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + I G ID + + IAQ +L++ ++ + + L+ Sbjct: 533 VPLVPVLSRIERTGVLIDDMKLAAQSQEIAQRLDELEQKAYEIAEQEF-NMNSPKQLQAL 591 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299 LF G+ ++ + S + + +LA D L +L + KL + L + + Sbjct: 592 LFEKMGLPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMI 650 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 651 NPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 685 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R IA +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ Sbjct: 686 DEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIMG 745 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473 T ID+VS EQR K + L Y AK + + + E Sbjct: 746 TTIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQDYMNTYFERYPGVMQYME 805 Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510 D A + +++ + A+ + GTA +++KKA Sbjct: 806 DTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 865 Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 +A+ G ++L + + VQE Sbjct: 866 DEWIQAEGDGRVKLLMQVHDELVFEVQESALTEI 899 >gi|238790750|ref|ZP_04634510.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] gi|238721148|gb|EEQ12828.1| DNA polymerase I [Yersinia frederiksenii ATCC 33641] Length = 932 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 101/577 (17%), Positives = 198/577 (34%), Gaps = 109/577 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + D Sbjct: 383 AAYLPVAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY---D 435 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I + ++L N + LA + H T E GK F + ++ Sbjct: 436 INLRGIAFDTMLESYVLNSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL- 494 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 + G Y D + T +L L P + E L + Sbjct: 495 ---------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKQVFQEIEMPLLPV 539 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID +++ + + +L++ +L + + L++ L+ Sbjct: 540 LSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQK 598 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + ++ + G S + + +LA D L ++ + KL + L +S GR Sbjct: 599 LPILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMISPVSGR 657 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + Sbjct: 658 VHTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRI 692 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++KV Sbjct: 693 RQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLPLEKV 752 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + EQR K + L Y A+ + + + + + + ++ Sbjct: 753 THEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQA 812 Query: 481 ---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA------- 512 + + A+ + GTA +++K+A A Sbjct: 813 ADQGYVTTLDGRRLYLPEIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQ 872 Query: 513 ----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 K + ++Q+ +L V E R + Sbjct: 873 EPEPKVRVIMQVHDELVFEVHESVLESTEQKVRELME 909 >gi|260576953|ref|ZP_05844934.1| DNA polymerase I [Rhodobacter sp. SW2] gi|259020795|gb|EEW24110.1| DNA polymerase I [Rhodobacter sp. SW2] Length = 935 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 106/597 (17%), Positives = 198/597 (33%), Gaps = 90/597 (15%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56 +D ET S L + + A A + + + MP Sbjct: 352 AVDTETTSLDEMRAELVGISLCVQAGTACYIPLGHRQGGGDLFGSSALTEGQMPVAQALA 411 Query: 57 -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L D+ ++ + N ++ + + LGI + A GL S +A Sbjct: 412 LLKPVLEDDAILKIGQNMKYDAKILAR-LGISVAPIDDTMLMSYAMHAGLNSHGMDALSD 470 Query: 116 LNFSEH----LTKMEEGKALIARFCKGSIDS-PPYDCTRAN-HVQAWQLFGEYCKRDVEA 169 + GK+ + F + ID Y A+ ++ W+LF R Sbjct: 471 QYLGHQPIAIKPLLGSGKSAVT-FDRVPIDQAVAYAAEDADITLRLWELFKPQLHR-AHV 528 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T +++ L ER L + + G ++D D + ++ AQ+ L+ +I + Sbjct: 529 TT-VYETL------ERPLVPVLAQMEMAGIQVDRDTLSRMSNAFAQKMAGLEAEIHDMAG 581 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + + + T + LA + L + Sbjct: 582 EKF-NVGSPKQLGEILFDKMSLPGGEKGK-TGAYATGADVLEDLATEHELPGRVLDWRQL 639 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + ++ GR+ + GA TGR + QN+P + Sbjct: 640 SKLKSTYTDALQDHINPETGRVHTSYSLTGAV-TGRLASTDPNLQNIPVRS--------- 689 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G++LV D + IE R+LA +A +AF Sbjct: 690 ---------------EEGRRIREAFVAPKGRRLVSLDYSQIELRILAHVADIPALKQAFR 734 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G+DI+ T ++ FN P+D+++ + R K + + Y G A+ + S + Sbjct: 735 EGQDIHAMTASEMFNVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRSAAQGFI 794 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLI 499 ++ + + D A + A+ + Sbjct: 795 DRYFERFPGIKGYMDDTVAFAKANGFVQTLFGRKIHTPEINARGPGAGFAKRAAINAPIQ 854 Query: 500 GTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVANVPR 548 GTA +++++A + LQ+ +L A + AR V Sbjct: 855 GTAADVIRRAMVRMPAAIAGIDAKMLLQVHDELLFEVAEDAVDTLIPIAREVMETAC 911 >gi|126732262|ref|ZP_01748063.1| DNA polymerase I [Sagittula stellata E-37] gi|126707344|gb|EBA06409.1| DNA polymerase I [Sagittula stellata E-37] Length = 934 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 96/536 (17%), Positives = 183/536 (34%), Gaps = 80/536 (14%) Query: 46 DRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D + +P L L D +VM + N ++ +F + GI+I A Sbjct: 396 DAKAEGQIPMQQALDALKPLLEDASVMKIGQNMKYDAKIFSRY-GIEIAPIDDTMLMSYA 454 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 G + + + GK+ I + Y A+ Sbjct: 455 LHGGEHQHGMDTLSERYLAHTPIPIKDLLGTGKSQITFDRVPLDKATGYAAEDADITLRL 514 Query: 157 QL-FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 L F R TR +++ L ER L + + + RG ++D + ++ AQ Sbjct: 515 ALTFKPQLHR-AHVTR-VYETL------ERPLVPVLKAMEMRGIKVDRATLSRMSGKFAQ 566 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + +L+E+I L + L LF + + K + LA Sbjct: 567 KMAELEEEIHALAGEKF-NVGSPAQLGDILFEKMSLPGGKRGKNG-KYSTPADVLEDLAT 624 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + L + KL + L E ++ D GR+ + GA+ TGR + QN Sbjct: 625 EHDLPGRVLDWRQLSKLKSTYTDALQEHINPDTGRVHTSYSIAGAN-TGRLASNDPNLQN 683 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A G LV D + IE R+L Sbjct: 684 IPVRS------------------------EEGRRIREAFVAPEGHTLVSLDYSQIELRIL 719 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A +A D +AF +G DI+ T ++ FN P+D+++ + R K + + Y G A Sbjct: 720 AHMADIDALKQAFRDGLDIHAMTASEMFNVPLDEMTPDIRRQAKAINFGVIYGISGFGLA 779 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + + + ++ + + D ++ + Sbjct: 780 RNLRIPRAEAQGFIDRYFERFPGIKQYMDDTVKFANEHKRVETMFGRVIHTPEIGAKGPR 839 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGVLQL----WKDLTEGFACVVQEGGS 537 A+ + GTA +++++A + +L + + V++G + Sbjct: 840 AGFAKRAAINAPIQGTAADIIRRAMVRMPDAIAKLPAKMLLQVHDELIFEVEDGAA 895 Score = 41.3 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%) Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + DI+ M K ++L VHDE++ E D + + +M Sbjct: 852 IQGTAADIIRRAMVRMPDAIAKLPAKMLLQVHDELIFEVEDGAAGDLIDVAREVM 906 >gi|320196914|gb|EFW71536.1| DNA polymerase I [Escherichia coli WV_060327] Length = 884 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 360 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 418 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 419 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 462 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 463 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 522 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 523 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 580 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 581 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 636 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 637 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 735 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 736 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 795 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 796 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 846 Score = 40.5 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 805 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 860 >gi|149378378|ref|ZP_01896080.1| DNA polymerase I [Marinobacter algicola DG893] gi|149357343|gb|EDM45863.1| DNA polymerase I [Marinobacter algicola DG893] Length = 911 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 105/593 (17%), Positives = 198/593 (33%), Gaps = 99/593 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V +A + + P +L ++ + S L L Sbjct: 337 DTETTSLRYMDADVVGVSFAIEPGEAAYVPFGHDYMGAPEQL----DRDTVLSQLKPLLE 392 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEH 121 D + N +++ + GI++ T + + S LA+ + Sbjct: 393 DPKKAKLGQNLKYDKNVLANH-GINLNGIA-EDTMLESYVLNSVGSRHDMDSLAMQYLGE 450 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 T E I N ++ + G Y D + T L + L P Sbjct: 451 QTITFES-----------IAGKGAKQLTFNQIEL-EQAGPYAAEDADITLRLHQALRPQL 498 Query: 182 D-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + L + + RG I + K + +A+ +L+++ + Sbjct: 499 EKTGRLQEVYEKIDLPLVPVLSRMEQRGAMISASTLRKHSQELAERMAELEKEAHEEAGE 558 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ + G+ +V + S + + +LA + L RL ++ Sbjct: 559 SF-NLGSPKQLQAIFYDKMGLPVVKKTPKGAPST-AEPVLQELAHEHTLPRLILEHRSLS 616 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL +TL E + GR+ + + TGR S QN+P + Sbjct: 617 KLKSTYTDTLPELIHHRTGRIHTSY-HQAVTATGRLSSSEPNLQNIPIRS---------- 665 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R +A G KLV AD + IE R++A ++G+ + AF Sbjct: 666 --------------EQGRRIRQAFVAPEGYKLVAADYSQIELRIMAHLSGDKGLLTAFEK 711 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460 GEDI+ T A+ F +D VS +QR K + L Y A + + Sbjct: 712 GEDIHRATAAEVFGVAVDDVSGDQRRSAKAINFGLIYGMSAFGLSRQLDVGRHQAQEYID 771 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 ++ + + + D + + + MQ A+ + Sbjct: 772 RYFERYPAVLKYMDNIRKQAHDDGYVETFYGRRLYLPEINARNKQMQQAAERTAINAPMQ 831 Query: 500 GTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 GTA +++K+A + HQ ++ + + V+E + R Sbjct: 832 GTAADIIKRAMVSVEDWLQEHHQDDARMILQVHDELILEVRESAVDTIREGLE 884 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ M + + ++L VHDE++ E ++ ++ L M+ Sbjct: 831 QGTAADIIKRAMVSVEDWLQEHHQDDARMILQVHDELILEVRESAVDTIREGLEKRMSAA 890 >gi|320182134|gb|EFW57037.1| DNA polymerase I [Shigella boydii ATCC 9905] Length = 884 Score = 299 bits (766), Expect = 8e-79, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 311 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 360 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 361 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 418 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 419 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 462 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 463 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 522 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 523 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 580 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 581 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 636 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 637 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 675 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 735 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 736 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 795 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 796 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 846 Score = 40.5 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 805 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 860 >gi|292493377|ref|YP_003528816.1| DNA polymerase I [Nitrosococcus halophilus Nc4] gi|291581972|gb|ADE16429.1| DNA polymerase I [Nitrosococcus halophilus Nc4] Length = 901 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 111/596 (18%), Positives = 206/596 (34%), Gaps = 110/596 (18%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S + + ++A A+ +D P++L + + + L L+ Sbjct: 328 DLETNSLDYIEAEIVGLSFAIKPKEAAYVPLAHDYDAAPLQL----AREGVLARLQPLLQ 383 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 D V N F+R + GI++ R + + + + S LAL + + Sbjct: 384 DSNRGKVGQNLKFDRNVLANY-GIELEGIR-HDSMLESYVLHSTASRHNMDSLALKYLQR 441 Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 T E GK F + ID TR Y D + +L Sbjct: 442 STISYEEVAGKGAKQLPFNQVPID----KATR------------YAAEDADICLQLHHYF 485 Query: 178 IPLSDGERDLWLLDQ-----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P E L L Q + G +ID + + +K++++ + Sbjct: 486 WPRLQQEEALCRLYQELEIPLIPVISRMERNGVQIDATQLKAHSAELTARLEKIEQEAFE 545 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + ++ L+ + + + T + + + + +LA D L +L Sbjct: 546 LAGEPFNLA-SPKQIQAILYDKLKLPITRKTP-TGQPSTAETVLQELALDYPLPQLLLEY 603 Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 A+ KL + L V+ GR+ + + TGR S QN+P + Sbjct: 604 RALSKLKSTYTDRLPLQVNPRTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRS------ 656 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA G L+ AD + IE R++A ++ ++ + Sbjct: 657 ------------------AEGRRIRQAFIAPPGYCLLAADYSQIELRIMAHLSDDEGLLA 698 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AF GEDI+ T A+ F TP++ V+ EQR K + L Y A+ S Sbjct: 699 AFEAGEDIHQRTAAEIFRTPLEGVTPEQRRSAKAINFGLIYGMSAHGLAQQLGISRSAAQ 758 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 ++++ + D + S ++Q A+ Sbjct: 759 HYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAERMAIN 818 Query: 496 DKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A Q ++Q+ +L A + + + R Sbjct: 819 APMQGTAADIIKRAMLRADQWLQKQGSNARMIMQVHDELVFEVAEAELDTTTAAIR 874 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 9/123 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKL 597 +A+ K + + +R+ Y + G YL S+ + R ++ Sbjct: 756 AAQHYIERYFHRYPGVKAYMDAICQQARQKGYVETLFGRRLYLPEIHSRQAQRRNQAERM 815 Query: 598 TENI-VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP-YFSVGTLCS 649 N +Q + DI+ M A + + +++ VHDE+V E + + + Sbjct: 816 AINAPMQGTAADIIKRAMLRADQWLQKQGSNARMIMQVHDELVFEVAEAELDTTTAAIRE 875 Query: 650 LMT 652 M Sbjct: 876 NMA 878 >gi|260857738|ref|YP_003231629.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|257756387|dbj|BAI27889.1| DNA polymerase I [Escherichia coli O26:H11 str. 11368] gi|323155157|gb|EFZ41344.1| DNA polymerase I [Escherichia coli EPECa14] Length = 928 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 201/591 (34%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F+ P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFSLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|320157741|ref|YP_004190120.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] gi|319933053|gb|ADV87917.1| DNA polymerase I [Vibrio vulnificus MO6-24/O] Length = 931 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 101/568 (17%), Positives = 192/568 (33%), Gaps = 105/568 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+T V N ++ + + GI+ Sbjct: 382 AAYVPVAHDYLDAPEQL----DREWVLAQLKPLLEDDTKAKVGQNLKYDASVLARY-GIE 436 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141 + + T + + N + LAL F +H +GK + F + ++ Sbjct: 437 MKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLT-FNQIDLN 494 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 Y D + T L RL + E L + Sbjct: 495 EAAV----------------YAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEVPLVPV 538 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G ID + + IA +L++ ++ + L+ LF G Sbjct: 539 LSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIAGQPF-NMNSPKQLQTILFEQMG 597 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + ++ + S + +LA D L + + KL + L + ++ GR Sbjct: 598 LPVIKKTPSGTPSTAEE-VLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMINPHTGR 656 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 657 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 691 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ I++V Sbjct: 692 RQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGVSIEQV 751 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479 S EQR K + L Y AK + ++ + ED Sbjct: 752 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSNA 811 Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ---- 515 + H +++ + A+ + GTA +++KKA Q Sbjct: 812 AQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 871 Query: 516 ---GVLQLWKDLTEGFACVVQEGGSISA 540 G ++L + + V+E Sbjct: 872 EGNGRVKLLMQVHDELVFEVEESCLTEI 899 >gi|332159647|ref|YP_004296224.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325663877|gb|ADZ40521.1| DNA polymerase I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 932 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEIPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID ++++ + + +L++ +L + + L++ L+ + Sbjct: 541 SRIERTGVLIDQNILVAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++KV+ Sbjct: 694 QAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 NEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909 >gi|85706952|ref|ZP_01038042.1| DNA polymerase I [Roseovarius sp. 217] gi|85668563|gb|EAQ23434.1| DNA polymerase I [Roseovarius sp. 217] Length = 936 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 97/551 (17%), Positives = 190/551 (34%), Gaps = 83/551 (15%) Query: 46 DRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D+ + MP +D L L+ D ++ + N ++ +F GI + A Sbjct: 398 DKMAEGQMPVADALAALKPVLEDHAILKIGQNMKYDAKIFA-ARGITVEPIDDTMLMSYA 456 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQA 155 GL +A + + GK + ++ Y A+ ++ Sbjct: 457 LHAGLHGHGMDALSERYLMHTPIPIKSLLGSGKTAVTFDRVPVDEAVKYAAEDADITLRL 516 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 W F R T +++ L ER L + + G ++D + + AQ Sbjct: 517 WLTFKPQLHRARVTT--VYETL------ERPLVPVLAQMERYGVKVDRATLRAMSGKFAQ 568 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + L+ +I +L + L LF G+ + + T + LA Sbjct: 569 KMAALESEIHELAGRSF-NVGSPKQLGEILFDEMGLSGGEKGK-TGAYATGADVLEDLAT 626 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + L + KL + L + + D GR+ + GA+ TGR + QN Sbjct: 627 EHELPARVLDWRQLSKLKSTYTDALQDHIDPDTGRVHTSYVQAGAN-TGRLASTDPNLQN 685 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A++G +LV D + IE R+L Sbjct: 686 IPVRS------------------------EEGRRIREAFVAASGHRLVSLDYSQIELRIL 721 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A +A + +AF G DI+ T ++ FN P+D+++ E R K + + Y G A Sbjct: 722 AHVAEIETLKQAFREGHDIHAMTASEMFNVPLDQMTPEIRRQAKAINFGVIYGISGFGLA 781 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + S + ++ + + D A + Sbjct: 782 RNLRIPRSEAQGFIDRYFERFPGIKDYMDATVAFAKEHGYVQTLFGRKIHTPEISAKGPR 841 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISAR 541 A+ + G+A +++++A + ++ + + V E + Sbjct: 842 AGFARRAAINAPIQGSAADIIRRAMIRMPDAIEGLPCKMLLQVHDELIFEVAEEATD--- 898 Query: 542 RVANVPRLVMR 552 R+ + R VM+ Sbjct: 899 RLIEIARDVMQ 909 >gi|332088561|gb|EGI93675.1| DNA polymerase I domain protein [Shigella boydii 3594-74] Length = 605 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 107/587 (18%), Positives = 198/587 (33%), Gaps = 110/587 (18%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 81 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + +H T E I + N + + G Y D + T +L Sbjct: 140 ERWLKHKTITFE-----------EIAGKGKNPLTFNQIAL-EEAGRYAAEDADVTLQLHL 187 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ P + E L + I G +ID ++ E + +L++ Sbjct: 188 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 247 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ S T L+ LF GI + + G S S + +LA D L ++ Sbjct: 248 HEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVIL 305 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 306 EYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------- 357 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +V AD + IE R++A ++ + Sbjct: 358 -----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGL 400 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 401 LTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKE 460 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA---------- 493 + + + + + +A++ L++ D Sbjct: 461 AQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAA 520 Query: 494 VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 521 INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581 >gi|163802211|ref|ZP_02196106.1| DNA polymerase I [Vibrio sp. AND4] gi|159174016|gb|EDP58826.1| DNA polymerase I [Vibrio sp. AND4] Length = 930 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 107/589 (18%), Positives = 196/589 (33%), Gaps = 121/589 (20%) Query: 7 DIET----RSPQPLPKV------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET L V GV AY A+ + D P +L ++ + Sbjct: 356 DTETDSLDYMVTNLVGVSFATDEGVAAY------VPLAHDYLDAPQQL----DRDWVLEQ 405 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLA 115 L L D+ V N ++ + + GI++ + T + + N + LA Sbjct: 406 LKPILEDDAQAKVGQNLKYDASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLA 463 Query: 116 LNFSEH-----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L F +H +GK + F + ++ Y D + T Sbjct: 464 LRFLQHSCISFEQIAGKGKNQLT-FNQIDLNEAA----------------PYAAEDADVT 506 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L RL + E L + I G ID + IA ++ Sbjct: 507 LRLHNRLAANIEQDKKLKAVYEEIEMPLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEE 566 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ + + L+ LF G+ ++ + S + + +LA D L Sbjct: 567 LEQKAYEIAEQEF-NMNSPKQLQALLFEKMGLPVIKKTPSGTPST-NEEVLQELALDYPL 624 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 625 PKLILEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G K++ D + IE R++A ++ Sbjct: 684 ------------------------NEEGRRIRQAFVAPTGYKILAVDYSQIELRIMAHLS 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 G+ + AF +G+DI+ T A+ I+ VS EQR K + L Y AK Sbjct: 720 GDQALLDAFRDGKDIHTATAAEIMGVSIEDVSSEQRRRAKAVNFGLIYGMSAFGLAKQLG 779 Query: 450 TMASHCGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY------------------- 489 + ++ + ED A + +++ + Sbjct: 780 IPRGEAQAYMDKYFERYPGVMQYMEDTRSAAAEQGYVETIFGRRLHLPEIQSRNGMRRKA 839 Query: 490 -PEFAVKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFAC 530 A+ + GTA +++KKA G ++L + + Sbjct: 840 AERAAINAPMQGTAADIIKKAMLLVGRWIEEHGDGRVKLLMQVHDELVF 888 >gi|229839864|ref|ZP_04460023.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229696230|gb|EEO86277.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. PEXU2] Length = 932 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L+ L+ + Sbjct: 541 SRIERAGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++KV+ Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V + R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909 >gi|238764290|ref|ZP_04625241.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] gi|238697441|gb|EEP90207.1| DNA polymerase I [Yersinia kristensenii ATCC 33638] Length = 932 Score = 299 bits (765), Expect = 1e-78, Method: Composition-based stats. Identities = 99/580 (17%), Positives = 193/580 (33%), Gaps = 115/580 (19%) Query: 28 AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 A A+ + D P +L W + L L DE + V N F++ + + Sbjct: 383 AAYLPVAHDYLDAPTQLDRNWVLAQ-------LKPLLEDEKALKVGQNLKFDQSMLARY- 434 Query: 85 GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKG 138 DI + ++L + LA + H T E GK F + Sbjct: 435 --DIELRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQI 492 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDL 187 ++ + G Y D + T +L L P + E L Sbjct: 493 AL----------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPL 536 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + I G ID +++ + + +L++ +L + + L+ L+ Sbjct: 537 LPILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYE 595 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS- 301 + ++ + G S + + +LA D L ++ + KL + L ++ Sbjct: 596 KQKLPILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPI 654 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR S QN+P Sbjct: 655 SGRVHTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEG 689 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P+ Sbjct: 690 RRIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDQGLLTAFAAGKDIHRATAAEVFGLPL 749 Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 +KV+ +QR K + L Y A+ + + + + + + Sbjct: 750 EKVTNDQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTR 809 Query: 478 AES---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH-- 514 ++ + + A+ + GTA +++K+A A Sbjct: 810 KQAAEQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAW 869 Query: 515 ---------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 870 LQQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 909 >gi|218707489|ref|YP_002415008.1| DNA polymerase I [Escherichia coli UMN026] gi|293407483|ref|ZP_06651402.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298383226|ref|ZP_06992819.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300896902|ref|ZP_07115390.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] gi|218434586|emb|CAR15515.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Escherichia coli UMN026] gi|291425400|gb|EFE98439.1| DNA polymerase I [Escherichia coli FVEC1412] gi|298276260|gb|EFI17780.1| DNA polymerase I [Escherichia coli FVEC1302] gi|300359277|gb|EFJ75147.1| DNA-directed DNA polymerase [Escherichia coli MS 198-1] Length = 928 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 106/591 (17%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L +E + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLENEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R I +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|114705617|ref|ZP_01438520.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] gi|114538463|gb|EAU41584.1| DNA polymerase I [Fulvimarina pelagi HTCC2506] Length = 971 Score = 298 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 93/509 (18%), Positives = 180/509 (35%), Gaps = 89/509 (17%) Query: 50 QSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 +P D L L D++++ + N ++ ++ + GI + T +++ Sbjct: 432 GGQIPMDEALVALKDVLEDKSILKIGQNVKYDLLVMLQH-GIAMTPID--DTMLISYALD 488 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEY 162 S L + + L++ G I+ C + P + V EY Sbjct: 489 ASSGLAGHGM-----DELSERFLGHKPISYKELCGSGRSAKPIAAVEIDRV------TEY 537 Query: 163 CKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D + T +++ L P ER L + + RG +D ++ +L Sbjct: 538 ASEDADVTLRIWQVLKPRLAAEGLAHVYERLERPLAPVLARMEQRGIMVDRQILSRLSGN 597 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 AQ++ L+++I K+ + L LF G+ ++ + + Sbjct: 598 FAQKQAALEDEIAKMAGEEF-NPGSPKQLGEILFGKLGLPGGKKTKSG-QWSTDARVLED 655 Query: 273 LAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 LA + L R + KL +TL + +GR+ + ++ TGR S Sbjct: 656 LAAEGHELPRRVVDWRQLTKLKGTYTDTLPHHMDENGRIHTSFSM-ASTTTGRLSSSEPN 714 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + +R+ +A GKKL+ AD + IE Sbjct: 715 LQNIPVRT------------------------EEGRAIRTAFVAPKGKKLLSADYSQIEL 750 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R+LA IA AF NG DI+ T ++ FN P++ + R K + + Y Sbjct: 751 RILAHIADIPQLKDAFQNGVDIHAMTASEMFNVPVEGMEPSVRRRAKAINFGIIYGISAF 810 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481 G A G ++++ + + D + + Sbjct: 811 GLANQLAIPREEAGQYIKRYFERFPGIRDYMDKTKAFAKKHGYVETLFGRRAHYPDITAK 870 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + ++ A+ + GTA +++++A Sbjct: 871 NPQIRSFNERAAINAPIQGTAADIIRRAM 899 >gi|310814705|ref|YP_003962669.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] gi|308753440|gb|ADO41369.1| DNA polymerase I [Ketogulonicigenium vulgare Y25] Length = 607 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 104/588 (17%), Positives = 194/588 (32%), Gaps = 85/588 (14%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD--RTEQSAMPSDLLQY 60 D ET S L V + +A + D TE +L Sbjct: 25 DTETTSLDEMQAELVGVSLALVPGRAAYIPLGHRMAAGDDLFADNRLTEGQLPLEVVLNA 84 Query: 61 LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 LR D V+ + N ++ + + G+ + A GL + + Sbjct: 85 LRPVLEDPAVLKIGQNIKYDVKIMARY-GVHLAPVDDTMLLSYALHAGLHNHGMDELSER 143 Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171 + ++E GK+ + + Y A+ ++ WQ F + T Sbjct: 144 YLNHRPIPIKELIGSGKSAVTFDHVPVEKAVAYAAEDADITLRLWQHFKPQLPQSRVTT- 202 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +++ L ER L + + G ++D D + ++ AQ+ +L+E+I Sbjct: 203 -VYETL------ERPLIPVLTRMEMAGVQVDRDTLSRMSNAFAQKMVQLEEEIHAAAGRS 255 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF G + + LA + L L + K Sbjct: 256 F-NVGSPKQLGEILFDEMGFQGGVKGKNG-AWGTGADVLEDLATEHALPGLILDWRQVAK 313 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + ++ D GR+ + GA+ TGR + QN+P + Sbjct: 314 LKSTYTDALQDHINPDSGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRT----------- 361 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A GK LV D + IE R+LA IA D +AF G Sbjct: 362 -------------EEGRRIRGAFVAPAGKVLVSLDYSQIELRILAQIAQIDALKEAFQQG 408 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T ++ FN P+D+++ E R K + + Y G A+ + + + Sbjct: 409 LDIHAATASEMFNVPLDQMTPEIRRQAKAINFGVIYGISAFGLARNLRIPRDRAQGFIDR 468 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGT 501 + + + D A + A+ + GT Sbjct: 469 YFERFPGIRAYMDQTIAFAKENGHVRTLFGRRINTPEINAKGPHAGFARRAAINAPIQGT 528 Query: 502 ACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++++A + ++ + + V+E + +A Sbjct: 529 AADIIRRAMIQMDPAIAHLPARMLLQVHDELLFEVEENAADELTAIAK 576 >gi|146276256|ref|YP_001166415.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] gi|145554497|gb|ABP69110.1| DNA polymerase I [Rhodobacter sphaeroides ATCC 17025] Length = 937 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 108/597 (18%), Positives = 195/597 (32%), Gaps = 91/597 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPV-KLWDRTEQSAMPSDL 57 + ID ET S L + + A A + + D +P DL Sbjct: 351 HVAIDTETTSLDEMRAELVGISLCVEAGSACYIPLGHRAGGGDLFGSLDLVAD-QIPLDL 409 Query: 58 -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 L D+ ++ + N ++ +F + GI + A G + Sbjct: 410 ALSMLKPVLEDDAILKIGQNMKYDAKIFARH-GIRVAPIDDTMLMSYAMHAGRHGHGMDE 468 Query: 113 CLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRD 166 T + GK+ I F + +D ++ W+LF R Sbjct: 469 LCDTYLGHKPIAIKTLLGSGKSQIT-FDRVPVDQAVCYAAEDADVTLRLWRLFKPQLHRA 527 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 T +++ L ER L + + G ++D D + ++ AQ+ L+ +I Sbjct: 528 RVTT--VYETL------ERPLVPVLAEMEMAGVQVDRDTLSRMSNAFAQKMAALEAEIHG 579 Query: 227 LTDGIIRSSRQTYALRMYLFLIT----GIDLVDMSEGTLKSILSHSNIT-QLAKDLILNR 281 L G + L LF G+ + + GT +L +L+ Sbjct: 580 LAGGPF-NVGSPKQLGEILFERMSLQGGVKGKNGAWGTGADVLEDLAAEGHDLPARVLDW 638 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S + L E + GR+ + GA+ TGR + QN+P + Sbjct: 639 RQLSKLKSTYTDALQEHIHPETGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRT------ 691 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A GK LV D + IE R+LA IA + Sbjct: 692 ------------------EEGRRIREAFVAPKGKLLVSVDYSQIELRILAHIADIPALKQ 733 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T A+ FN P++ + R K + + Y G A+ + + Sbjct: 734 AFREGHDIHAMTAAEMFNVPLEGMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRADAQ 793 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQY-------------------PEFAVKD 496 + ++ + + D A + H ++Q + A+ Sbjct: 794 GFIDRYFERFPGIRAYMDETVAFAKAHGFVQTLFGRRINTPEINAKGPGAGFARRAAINA 853 Query: 497 KLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA +++++A + +LQ+ +L + R V Sbjct: 854 PIQGTAADVIRRAMIRMPKALDGLPAKMLLQVHDELLFEVDEAAADPVIARVREVME 910 >gi|153948148|ref|YP_001399022.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] gi|152959643|gb|ABS47104.1| DNA polymerase I [Yersinia pseudotuberculosis IP 31758] Length = 932 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L+ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++KV+ Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V + R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909 >gi|260775065|ref|ZP_05883964.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] gi|260608982|gb|EEX35142.1| DNA polymerase I [Vibrio coralliilyticus ATCC BAA-450] Length = 931 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 108/570 (18%), Positives = 197/570 (34%), Gaps = 101/570 (17%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + GV AY A+ + D P +L ++ + L L D+ V N ++ Sbjct: 377 TEEGVAAY------VPVAHDYLDAPEQL----DRDWVLEQLKPILEDDAQAKVGQNLKYD 426 Query: 77 RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + GI++ + T + + N + LAL F +H E Sbjct: 427 ASVLARY-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQ------- 477 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184 I N ++ + Y D + T L RL+ + E Sbjct: 478 ----IAGKGKKQLTFNQIEL-EQASPYAAEDADVTLRLHNRLLANIEQDEKLKTIYEEVE 532 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + I G ID + + IA +L++ ++ + + L+ Sbjct: 533 VPLVPVLSRIERTGVLIDDMKLAAQSQEIALRLDELEQQAFEIAEQEF-NMNSPKQLQAI 591 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299 LF G+ +V + S + + +LA D L +L + KL + L + + Sbjct: 592 LFEKMGLPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMI 650 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 651 NPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 685 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R IA +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ Sbjct: 686 DEGRRIRQAFIAPHGYKIMAVDYSQIELRIMAHLSGDKALLDAFQQGKDIHAATAAEIIG 745 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473 I++VS EQR K + L Y AK + + + E Sbjct: 746 VDIEQVSAEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQQYMDTYFERYPGVMQYME 805 Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510 D A + +++ + A+ + GTA +++KKA Sbjct: 806 DTRSAAAEQGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 865 Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGG 536 ++ QG ++L + + VQE Sbjct: 866 DEWIESQGQGRVKLLMQVHDELVFEVQESA 895 >gi|238759874|ref|ZP_04621030.1| DNA polymerase I [Yersinia aldovae ATCC 35236] gi|238701935|gb|EEP94496.1| DNA polymerase I [Yersinia aldovae ATCC 35236] Length = 932 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 98/575 (17%), Positives = 193/575 (33%), Gaps = 113/575 (19%) Query: 28 AVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 A A+ + D P +L W L L +E + V N F++ + + Sbjct: 383 AAYLPLAHDYLDAPAQLDRNWVLAT-------LKPLLENEKALKVGQNLKFDQSMLARY- 434 Query: 85 GIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGS 139 GI++ + T + + + LA + H T E GK F + + Sbjct: 435 GIELRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIA 493 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLW 188 + + G Y D + T +L L P + E L Sbjct: 494 L----------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLL 537 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + I G ID +++ + + +L++ +L + + L++ L+ Sbjct: 538 PILSRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEK 596 Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-D 302 + ++ + G S + + +LA D L ++ + KL + L ++ Sbjct: 597 QKLPILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVS 655 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + + TGR S QN+P Sbjct: 656 GRVHTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGR 690 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ Sbjct: 691 RIRQAFIAPKGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGMPLE 750 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ EQR K + L Y A+ + + + + + + Sbjct: 751 SVTNEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGGLEYMERTRK 810 Query: 479 ES---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 ++ + + A+ + GTA +++K+A A Sbjct: 811 QAAEQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWL 870 Query: 515 --------QGVLQLWKDLTEGFACVVQEGGSISAR 541 + ++Q+ +L V E R Sbjct: 871 QQEPEPLVRVIMQVHDELVFEVHESVLESAEQKIR 905 Score = 40.9 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619 RRL D+ + RE +Q + DI+ M Sbjct: 823 GRRLYLPDIHSRNA---NRRKAAEREAINAP------MQGTAADIIKRAMIAVDAWLQQE 873 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTK 653 +++ VHDE+V E ++ S + LM + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRDLMEQ 910 >gi|149204271|ref|ZP_01881238.1| DNA polymerase I [Roseovarius sp. TM1035] gi|149142156|gb|EDM30203.1| DNA polymerase I [Roseovarius sp. TM1035] Length = 934 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 105/601 (17%), Positives = 196/601 (32%), Gaps = 100/601 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--DRTEQSAMP-SDLLQ 59 D ET S L + + +A A+ D L+ D + +P ++L Sbjct: 352 DTETTSLNEMQADLVGISLATAPGRACYIPVAHK-DGAADDLFGSDARAEGQLPLDEVLN 410 Query: 60 YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L+ D+ ++ + N ++ + GI + A GL + Sbjct: 411 ALKPVLEDDAILKIGQNMKYDAKILAAH-GITVAPIDDTMLMSYALHAGLHGHGMDTLSE 469 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + I + +D + D + T L+ Sbjct: 470 RYLNHSPIP-------IRSLLGSGKAAVTFDRVPVAEAVKY------AAEDADITLRLWL 516 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P ER L + + G +D D + + AQ+ L+ +I Sbjct: 517 TLKPQLHRAQVTTVYETLERPLVPVLARMERDGVLVDRDTLRAMSGKFAQKMAGLESEIH 576 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + L LF G+ + + T + LA + L Sbjct: 577 ALARRSF-NVGSPKQLGEILFDEMGLPGGEKGK-TGAYATGADVLEDLATEHDLPARVLD 634 Query: 286 GSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + + D GR+ + GAS TGR+S QN+P + Sbjct: 635 WRQLSKLKSTYTDALQDHIDPDTGRVHTSYLQTGAS-TGRFSSSDPNLQNIPVRS----- 688 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A+ G +LV D + IE R+LA +AG + Sbjct: 689 -------------------EEGRRIREAFVAAPGNRLVSLDYSQIELRILAHVAGIETLK 729 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF +G DI+ T ++ FN P+ +++ E R K + + Y G A+ + Sbjct: 730 QAFRDGHDIHAMTASEMFNVPLAEMTPEIRRQAKAINFGVIYGISGFGLARNLRIPRGEA 789 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVK 495 + ++ + + D A + A+ Sbjct: 790 QGFIDRYFERFPGIKDYMDATTAFAKEHGYVQTLFGRKIHTPEIAAKGPRAGFARRAAIN 849 Query: 496 DKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + GTA +++++A + + ++ + + V E S R+ +V R VM Sbjct: 850 APIQGTAADIIRRAMIRMPEAIEGLPCKMLLQVHDELIFEVAED---SVDRLIDVARAVM 906 Query: 552 R 552 + Sbjct: 907 Q 907 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 4/52 (7%) Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M ++L VHDE++ E + + + Sbjct: 852 IQGTAADIIRRAMIRMPEAIEGLPCKMLLQVHDELIFEVAEDSVDRLIDVAR 903 >gi|84515991|ref|ZP_01003352.1| DNA polymerase I [Loktanella vestfoldensis SKA53] gi|84510433|gb|EAQ06889.1| DNA polymerase I [Loktanella vestfoldensis SKA53] Length = 936 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 110/601 (18%), Positives = 206/601 (34%), Gaps = 91/601 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 + +D ET S L + + A QA A+ + + D + M Sbjct: 346 HVAVDTETTSLDEMRADLVGISLCVAAGQACYIPLAHKAGADDLFGSDARAEGQMDMAAC 405 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L L D +++ + N ++ +F LGI + A GL + + Sbjct: 406 LAMLKPVLEDASILKIGQNMKYDAKIFA-LLGIAVAPIDDTMLMSYAMHAGLHNHGMDTL 464 Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVE 168 + GK+ I D+ Y A+ ++ WQ+F + Sbjct: 465 SERYLGHIPIPIKPLLGSGKSAITFDRVPVDDAVKYAAEDADVTLRLWQMFKPQLHQSRV 524 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 T +++ L ER L + + G ++D D + ++ AQ+ L+++I K+ Sbjct: 525 TT--VYETL------ERPLVPVLAQMEMHGIKVDRDTLSRMSNAFAQKMAGLEDEIQKMA 576 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVD----MSEGTLKSILSHSNITQLAKDLILNRLAS 284 + L LF G+ + D T + LA L R Sbjct: 577 GRPF-NVGSPKQLGEILFDELGLAMPDGKLPAKGKTGAYSTGADVLEDLATIHDLPRRIL 635 Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + ++ D GR+ + GA TGR + QN+P + Sbjct: 636 DWRQLAKLKSTYTDALQDHINPDTGRVHTSYSIAGAI-TGRLASTDPNLQNIPVRS---- 690 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A+ G +V D + IE R+LA IAG D Sbjct: 691 --------------------DEGRRIREAFVAAPGNVIVSLDYSQIELRILAHIAGIDAL 730 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AF +G DI+ T ++ F+ P+D+++ + R K + + Y G A+ + S Sbjct: 731 KQAFLDGIDIHAMTASEMFDVPLDQMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRSD 790 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAV 494 + ++ + + D A + A+ Sbjct: 791 AQGFIDRYFERFPGIRQYMDDTVAFARDRGYVQTLFGRRINTPEINTKGPQAGFAKRAAI 850 Query: 495 KDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVANV 546 + GTA +++++A + + LQ+ +L + AR+V Sbjct: 851 NAPIQGTAADVIRRAMIRMPKAIAGLPAKMLLQVHDELLFEVDATAADDLIGIARQVMET 910 Query: 547 P 547 Sbjct: 911 A 911 >gi|24115152|ref|NP_709662.1| DNA polymerase I [Shigella flexneri 2a str. 301] gi|24054427|gb|AAN45369.1| DNA polymerase I, 3 --> 5 polymerase, 5 --> 3 and 3 --> 5 exonuclease [Shigella flexneri 2a str. 301] Length = 928 Score = 298 bits (764), Expect = 2e-78, Method: Composition-based stats. Identities = 107/591 (18%), Positives = 198/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SHERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEHADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|157830862|pdb|1DPI|A Chain A, Structure Of Large Fragment Of Escherichia Coli Dna Polymerase I Complexed With DTMP gi|157831606|pdb|1KFD|A Chain A, Crystal Structures Of The Klenow Fragment Of Dna Polymerase I Complexed With Deoxynucleoside Triphosphate And Pyrophosphate Length = 605 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 81 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 140 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 183 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 184 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 243 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 244 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 301 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 302 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 357 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 358 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 456 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 457 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 516 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 517 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581 >gi|22127682|ref|NP_671105.1| DNA polymerase I [Yersinia pestis KIM 10] gi|108809516|ref|YP_653432.1| DNA polymerase I [Yersinia pestis Antiqua] gi|108810410|ref|YP_646177.1| DNA polymerase I [Yersinia pestis Nepal516] gi|150260919|ref|ZP_01917647.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165926116|ref|ZP_02221948.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165940228|ref|ZP_02228758.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|166011452|ref|ZP_02232350.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166213731|ref|ZP_02239766.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|167402092|ref|ZP_02307569.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418727|ref|ZP_02310480.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427044|ref|ZP_02318797.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218927238|ref|YP_002345113.1| DNA polymerase I [Yersinia pestis CO92] gi|229841946|ref|ZP_04462101.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|229900588|ref|ZP_04515713.1| DNA polymerase I [Yersinia pestis Nepal516] gi|270488049|ref|ZP_06205123.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294502126|ref|YP_003566188.1| DNA polymerase I [Yersinia pestis Z176003] gi|21960799|gb|AAM87356.1|AE013984_2 DNA polymerase I [Yersinia pestis KIM 10] gi|108774058|gb|ABG16577.1| DNA polymerase I [Yersinia pestis Nepal516] gi|108781429|gb|ABG15487.1| DNA polymerase I [Yersinia pestis Antiqua] gi|115345849|emb|CAL18707.1| DNA polymerase I [Yersinia pestis CO92] gi|149290327|gb|EDM40404.1| DNA polymerase I [Yersinia pestis CA88-4125] gi|165911860|gb|EDR30507.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. IP275] gi|165921976|gb|EDR39153.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. F1991016] gi|165989598|gb|EDR41899.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. E1979001] gi|166205133|gb|EDR49613.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. B42003004] gi|166962721|gb|EDR58742.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048467|gb|EDR59875.1| DNA polymerase I [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053971|gb|EDR63802.1| DNA polymerase I [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682369|gb|EEO78460.1| DNA polymerase I [Yersinia pestis Nepal516] gi|229690256|gb|EEO82310.1| DNA polymerase I [Yersinia pestis biovar Orientalis str. India 195] gi|262360204|gb|ACY56925.1| DNA polymerase I [Yersinia pestis D106004] gi|270336553|gb|EFA47330.1| DNA-directed DNA polymerase [Yersinia pestis KIM D27] gi|294352585|gb|ADE62926.1| DNA polymerase I [Yersinia pestis Z176003] gi|320017073|gb|ADW00645.1| DNA polymerase I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 932 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L+ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++KV+ Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V + R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909 >gi|37678370|ref|NP_932979.1| DNA polymerase I [Vibrio vulnificus YJ016] gi|37197109|dbj|BAC92950.1| DNA polymerase I [Vibrio vulnificus YJ016] Length = 957 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 99/573 (17%), Positives = 186/573 (32%), Gaps = 111/573 (19%) Query: 33 CAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKK 82 ++A + + D L L D+T V N ++ + + Sbjct: 399 LSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDDTKAKVGQNLKYDASVLAR 458 Query: 83 TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136 GI++ + T + + N + LAL F +H +GK + F Sbjct: 459 Y-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLT-FN 515 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185 + ++ Y D + T L RL + E Sbjct: 516 QIDLNEAAV----------------YAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEV 559 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + G ID + + IA +L++ ++ + L+ L Sbjct: 560 PLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIAGQPF-NMNSPKQLQTIL 618 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300 F G+ ++ + S + +LA D L + + KL + L + ++ Sbjct: 619 FEQMGLPVIKKTPSGTPSTAEE-VLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMIN 677 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ + + TGR S QN+P + Sbjct: 678 PHTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 712 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ Sbjct: 713 EGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGV 772 Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFED 474 I++VS EQR K + L Y AK + ++ + ED Sbjct: 773 SIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQTYMDKYFERYPGVMQYMED 832 Query: 475 WEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKH 514 S H +++ + A+ + GTA +++KKA Sbjct: 833 TRSNASQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVD 892 Query: 515 Q-------GVLQLWKDLTEGFACVVQEGGSISA 540 Q G ++L + + V+E Sbjct: 893 QWIQEEGNGRVKLLMQVHDELVFEVEESCLTEI 925 >gi|45439883|ref|NP_991422.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145601126|ref|YP_001165202.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162418335|ref|YP_001604664.1| DNA polymerase I [Yersinia pestis Angola] gi|170026402|ref|YP_001722907.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229836126|ref|ZP_04456294.1| DNA polymerase I [Yersinia pestis Pestoides A] gi|45434738|gb|AAS60299.1| DNA polymerase I [Yersinia pestis biovar Microtus str. 91001] gi|145212822|gb|ABP42229.1| DNA polymerase I [Yersinia pestis Pestoides F] gi|162351150|gb|ABX85098.1| DNA polymerase I [Yersinia pestis Angola] gi|169752936|gb|ACA70454.1| DNA polymerase I [Yersinia pseudotuberculosis YPIII] gi|229706574|gb|EEO92580.1| DNA polymerase I [Yersinia pestis Pestoides A] Length = 932 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L+ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++KV+ Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V + R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909 >gi|323943759|gb|EGB39856.1| DNA polymerase A [Escherichia coli H120] Length = 810 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 237 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 286 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 287 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 344 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 345 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDSDVTL 388 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 389 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 448 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 449 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 506 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 507 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 562 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 563 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 601 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 602 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 661 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 662 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 721 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 722 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 772 Score = 40.5 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 731 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 786 >gi|195940271|ref|ZP_03085653.1| DNA polymerase I [Escherichia coli O157:H7 str. EC4024] Length = 881 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 107/582 (18%), Positives = 197/582 (33%), Gaps = 118/582 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLT 525 + + GTA +++K+ AW Q +++ + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVH 881 >gi|51594376|ref|YP_068567.1| DNA polymerase I [Yersinia pseudotuberculosis IP 32953] gi|186893363|ref|YP_001870475.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] gi|51587658|emb|CAH19258.1| DNA polymerase A [Yersinia pseudotuberculosis IP 32953] gi|186696389|gb|ACC87018.1| DNA polymerase I [Yersinia pseudotuberculosis PB1/+] Length = 932 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 383 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 437 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 438 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 495 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 540 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L+ L+ + Sbjct: 541 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 599 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 600 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 659 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 693 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++KV+ Sbjct: 694 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 753 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 754 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 813 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 814 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 873 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V + R + Sbjct: 874 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 909 >gi|262163668|ref|ZP_06031409.1| DNA polymerase I [Vibrio mimicus VM223] gi|262027884|gb|EEY46548.1| DNA polymerase I [Vibrio mimicus VM223] Length = 890 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 103/558 (18%), Positives = 196/558 (35%), Gaps = 105/558 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L +++ + + L L DE+ V N ++ + + G++ Sbjct: 341 AAYIPVAHDYLDAPQQL----DRAWVIAQLKPLLEDESKAKVGQNLKYDASVIARY-GVE 395 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141 + R T + + N + LAL F +H +GK + F + + Sbjct: 396 LRGIR-HDTMLQSYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIDL- 452 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-----------SDGERDLWLL 190 Q +Y D + T L +R+ PL S+ E L + Sbjct: 453 ---------------QEAAQYAAEDADVTLRLHQRISPLIEQDSKLAQVYSEIEMPLVPV 497 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID L+ + IA +L++ +L S L+ LF Sbjct: 498 LSRIERTGVMIDDMLLSAQSQEIALRLDELEQKAYELAGQSFNLS-SPKQLQTILFEQMK 556 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + ++ + S + + +LA D L ++ + KL + L + ++ GR Sbjct: 557 LPVLQKTPSGTPST-NEEVLQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPNTGR 615 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + Sbjct: 616 VHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNEEGRRI 650 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ PI++V Sbjct: 651 RQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQALLDAFREGKDIHAATAAEIIGVPIEQV 710 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------ 474 S EQR K + L Y AK + ++ + + + Sbjct: 711 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRA 770 Query: 475 ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RA 512 + S + + A+ + GTA +++KKA + Sbjct: 771 AELGYVETIFGRRLHLPEITSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQR 830 Query: 513 KHQGVLQLWKDLTEGFAC 530 + G ++L + + Sbjct: 831 EGDGRVKLLMQVHDELVF 848 >gi|254511729|ref|ZP_05123796.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] gi|221535440|gb|EEE38428.1| DNA polymerase I superfamily protein [Rhodobacteraceae bacterium KLH11] Length = 933 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 104/545 (19%), Positives = 195/545 (35%), Gaps = 82/545 (15%) Query: 46 DRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D + MP + L L+ D +++ + N ++ +F + G+++ A Sbjct: 395 DALAEGQMPLDEALTLLKPVFEDSSILKIGQNMKYDAKIFARY-GVNVVPIDDTMLMSYA 453 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQ 154 G + S + GK+ I F K ID Y A+ ++ Sbjct: 454 MHGGKHGHGMDTLSERYLSHTPIPIKPLLGSGKSAIT-FDKVPIDEATAYAAEDADITLR 512 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 W+LF + V+ T +++ L ER L + + G ++D D++ ++ A Sbjct: 513 LWKLFKPQLHQ-VQVTT-VYETL------ERPLVPVLAEMEMNGIKVDRDVLSRMSNAFA 564 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 Q+ L+ +I +L + L LF T K + LA Sbjct: 565 QKMAGLEAEIHELAGENF-NVGSPAQLGEILFDKM-GLEGGKKGKTGKYSTGADILEDLA 622 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328 + L R + KL + L ++ D GR+ + GA+ TGR + Q Sbjct: 623 TEHELPRRVLDWRQLSKLKSTYTDALQTHINPDTGRVHTSYSITGAN-TGRLASTDPNLQ 681 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + +R IA G LV D + IE R+ Sbjct: 682 NIPVRT------------------------EEGRRIRGAFIAEPGNVLVSLDYSQIELRI 717 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 LA IA +AFA+G DI+ T ++ F+ P+D+++ E R K + + Y G Sbjct: 718 LAHIADIPALKQAFADGLDIHAMTASEMFDVPLDEMTPEIRRQAKAINFGVIYGISGFGL 777 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-HHLWMQDQY-------------- 489 A+ + + + ++ + + D A + H ++Q + Sbjct: 778 ARNLRIPRAEAQGFIDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEINAKGP 837 Query: 490 -----PEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISA 540 A+ + GTA +++++A + ++ + + V EG Sbjct: 838 HAGFSRRAAINAPIQGTAADVIRRAMVRMPGAINGLPAKMLLQVHDELLFEVAEGAVDET 897 Query: 541 RRVAN 545 +A Sbjct: 898 IGIAR 902 >gi|114322007|ref|YP_743690.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] gi|114228401|gb|ABI58200.1| DNA polymerase I [Alkalilimnicola ehrlichii MLHE-1] Length = 912 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 104/595 (17%), Positives = 197/595 (33%), Gaps = 107/595 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S + V + A +A A+ D P +L ++ + + L L Sbjct: 338 DLETSSLNYMDAEIVGVALAVGAGEAAYVPLAHEGPDTPTQL----DRDRVLAALKPLLE 393 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNFSE 120 D V N ++ + + DI + T + + +S LAL + Sbjct: 394 DPDRAKVGQNLKYDMSVLARY---DIHLEGVAYDTMLESYVLDSTASRHDMDSLALKYL- 449 Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 G+A + C P+ + D + T L + L Sbjct: 450 -------GRATVKYEDVCGKGAKQIPFAQVAVETATRY------AGEDADITLRLHQTLY 496 Query: 179 PLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P + E L + + G ++D L+ + +A+ L++ + Sbjct: 497 PRLEAEGRLVQVFHAIEMPLLPVLSRMERHGVKVDRALLEQQSTELAEGMAALEQRAHEE 556 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 +G S ++ LF G+ ++ + S A+ L RL + Sbjct: 557 AEGPFNLS-SPKQIQEILFERMGLPVLQKTPKGAPSTAESVLEELAARGYELPRLILAYR 615 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL + L + GR+ + + TGR S QN+P + Sbjct: 616 SLAKLKTTYTDKLPRLIHPKTGRVHTSY-HQAVAATGRLSSSDPNLQNIPVRT------- 667 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G KL+ AD + +E R++A ++G++ +A Sbjct: 668 -----------------AEGRRIRKAFVAEPGCKLLAADYSQVELRIMAHLSGDEGLRQA 710 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA G DI+ T A+ F ++V EQR K + L Y A+ Sbjct: 711 FAEGADIHSATAAEVFGLAPERVGGEQRRAAKAINFGLIYGMSAYGLARQLGIERGEAQA 770 Query: 458 DLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKD 496 + ++ + + D +AE + + ++ A+ Sbjct: 771 YVDRYFERYPGVKEYMDRTRAEARERGYVETLFGRRLYLPEINARNRQRREYAERTAINA 830 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541 + GTA +L+K+A A + V+Q+ +L + R Sbjct: 831 PMQGTAADLIKRAMVAVDAWLTEAHSKARMVMQVHDELVLEVPAADVPAVAEGLR 885 >gi|254474520|ref|ZP_05087906.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] gi|214028763|gb|EEB69598.1| DNA polymerase I superfamily protein [Ruegeria sp. R11] Length = 949 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 95/538 (17%), Positives = 184/538 (34%), Gaps = 84/538 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLK 110 L L D ++ + N ++ +F++ G I + A G Sbjct: 420 LKPVLEDPAILKIGQNMKYDAKIFRRQHGAGFEDGITVAPYDDTMLLSYALFAGQHGHGM 479 Query: 111 NACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKR 165 + S + + GK+ I D+ Y A+ ++ W+LF + Sbjct: 480 DTLSERYLSHSPIPIKSLLGTGKSAITFDRVPIADAVAYAAEDADITLRLWKLFKPQLHQ 539 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 T +++ L ER L + + G ++D D + ++ AQ+ L+ +I Sbjct: 540 QRVTT--VYETL------ERPLSPVLAKMEMEGVKVDRDTLSRMSNAFAQKMAALESEIH 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + L LF G++ + T + LA + L Sbjct: 592 ELAGETF-NVGSPKQLGEILFDKMGLEGGKKGK-TGAYATGADILEDLATEHDLPARVLD 649 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + + GR+ + GA+ TGR + QN+P + Sbjct: 650 WRQLSKLKSTYTDALQDHIHPETGRVHTSYVQTGAN-TGRLASTDPNLQNIPIRS----- 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A G L+ D + IE R+LA +AG D Sbjct: 704 -------------------EEGRRIREAFVAEEGNVLLALDYSQIELRILAHVAGIDTLK 744 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AFA G+DI+ T ++ FN P+ +++ + R K + + Y G A+ + + Sbjct: 745 QAFAEGQDIHALTASEMFNVPLSEMTPDIRRQAKAINFGVIYGISGFGLARNLRIPRAEA 804 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVK 495 + ++ + + D A + A+ Sbjct: 805 QGFIDRYFERFPGIRRYMDDTVAFAKEHGYVQTLFGRKIHTPEIAAKGPRAGFAKRAAIN 864 Query: 496 DKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA +++++A + + LQ+ +L E +AR+V Sbjct: 865 APIQGTAADVIRRAMIRMPEAIAHLPARMLLQVHDELLFEVPESAAEDTIEAARKVME 922 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 7/72 (9%) Query: 602 VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPY-FSVGTLCSLM--TKN 654 +Q + D++ M ++L VHDE++ E P++ ++ +M + Sbjct: 867 IQGTAADVIRRAMIRMPEAIAHLPARMLLQVHDELLFEVPESAAEDTIEAARKVMESAAD 926 Query: 655 PSWAKGLPLKAE 666 P+ + L A+ Sbjct: 927 PAVHLDVKLVAD 938 >gi|188532189|ref|YP_001905986.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] gi|188027231|emb|CAO95070.1| DNA polymerase I [Erwinia tasmaniensis Et1/99] Length = 929 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 113/604 (18%), Positives = 200/604 (33%), Gaps = 117/604 (19%) Query: 7 DIETRSPQPLPKV----------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D+ET S L GV AY A+ + D P +L +++ + + Sbjct: 355 DLETDSLDTLSANIIGLSFATAPGVAAY------LPVAHDYLDAPAQL----DRNDVLAR 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACL 114 L L + + V N F+R + K DI + ++L N + L Sbjct: 405 LKPLLENPQALKVGQNLKFDRGVLK---SYDIELQGIRFDTMLESYALNSVIGRHDMDTL 461 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL + H T E I N + + G Y D + T +L Sbjct: 462 ALRWLNHKTVTFE-----------EIAGKGKKQLTFNQIAL-EQAGHYAAEDADVTLQLH 509 Query: 175 KRLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++ P + E+ L + I G ID ++ + + +L++ Sbjct: 510 LKMWPALEKEQGPKNVFEQLEMPLVPVMSRIERNGVLIDQGILATHSQELGSRLAELEQK 569 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 +L S L+ LF GI + G S S + +LA D L ++ Sbjct: 570 AHELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVI 627 Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 628 LEHRGLSKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP------ 680 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G ++V AD + IE R++A ++ + Sbjct: 681 ------------------VRNDEGRRIRQAFIAPPGYRIVAADYSQIELRIMAHLSQDKG 722 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFA+ +DI+ T A+ F +DKVS EQR K + L Y ++ A Sbjct: 723 LLSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSSFGLSRQLNIGAG 782 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 + + + + + + + + Sbjct: 783 EAKKYMDLYFERYPGVLQYMESTRELAAEKGYVSTLDGRRLYLPDINASNAIRRKAAERA 842 Query: 493 AVKDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K+A A + ++Q+ +L E S R Sbjct: 843 AINAPMQGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVFEVRADAVEAASAQIR 902 Query: 542 RVAN 545 + Sbjct: 903 ALME 906 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 28/72 (38%), Gaps = 10/72 (13%) Query: 603 QAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ M +++ VHDE+V E + + +LM + Sbjct: 849 QGTAADIIKRAMIAVDGWLEQQTSPDVKMIMQVHDELVFEVRADAVEAASAQIRALMEGS 908 Query: 655 PSWAKGLPLKAE 666 A +PL+ + Sbjct: 909 M--ALDVPLRVD 918 >gi|312971852|ref|ZP_07786026.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|2982102|pdb|1KFS|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982104|pdb|1KRP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|2982108|pdb|1KSP|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex gi|3891304|pdb|2KFN|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Manganese gi|3891306|pdb|2KFZ|A Chain A, Klenow Fragment With Bridging-Sulfur Substrate And Zinc Only gi|4558217|pdb|2KZM|A Chain A, Klenow Fragment With Normal Substrate And Zinc And Manganese gi|4558219|pdb|2KZZ|A Chain A, Klenow Fragment With Normal Substrate And Zinc Only gi|5542481|pdb|1QSL|A Chain A, Klenow Fragment Complexed With Single-Stranded Substrate And Europium (Iii) Ion gi|6730280|pdb|1D9D|A Chain A, Crystall Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Short Dna Fragment Carrying 2'-0- Aminopropyl-Rna Modifications 5'-D(Tcg)-Ap(Auc)-3' gi|6730282|pdb|1D9F|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Tetramer Carrying 2'-O-(3-Aminopropyl)- Rna Modification 5'-D(Tt)-Ap(U)-D(T)-3' gi|310334229|gb|EFQ00434.1| DNA polymerase I domain protein [Escherichia coli 1827-70] gi|315618773|gb|EFU99357.1| DNA polymerase I domain protein [Escherichia coli 3431] gi|323167488|gb|EFZ53195.1| DNA polymerase I domain protein [Shigella sonnei 53G] gi|323177872|gb|EFZ63456.1| DNA polymerase I domain protein [Escherichia coli 1180] gi|323182379|gb|EFZ67786.1| DNA polymerase I domain protein [Escherichia coli 1357] gi|332085134|gb|EGI90312.1| DNA polymerase I domain protein [Shigella dysenteriae 155-74] Length = 605 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 81 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 140 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 183 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 184 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 243 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 244 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 301 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 302 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 357 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 358 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 456 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 457 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 516 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 517 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581 >gi|313647099|gb|EFS11554.1| DNA polymerase I domain protein [Shigella flexneri 2a str. 2457T] Length = 605 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SHERALEL 81 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 140 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 183 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 184 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 243 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 244 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 301 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 302 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 357 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 358 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 456 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 457 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAA 516 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 517 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581 >gi|331685599|ref|ZP_08386182.1| DNA polymerase I (POL I) [Escherichia coli H299] gi|331077070|gb|EGI48285.1| DNA polymerase I (POL I) [Escherichia coli H299] Length = 928 Score = 298 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 107/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF I + + G S S + +LA D L Sbjct: 567 EKKAHEIAGEEFNLS-STKQLQTILFEKQSIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.5 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|27364348|ref|NP_759876.1| DNA polymerase I [Vibrio vulnificus CMCP6] gi|27360467|gb|AAO09403.1| DNA polymerase I [Vibrio vulnificus CMCP6] Length = 931 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 98/573 (17%), Positives = 186/573 (32%), Gaps = 111/573 (19%) Query: 33 CAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKK 82 ++A + + D L L D+T V N ++ + + Sbjct: 373 LSFAVAEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPLLEDDTKAKVGQNLKYDASVLAR 432 Query: 83 TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136 GI++ + T + + N + LAL F +H +GK + F Sbjct: 433 Y-GIEMKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQLAGKGKNQLT-FN 489 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185 + ++ Y D + T L RL + E Sbjct: 490 QIDLNEAAV----------------YAAEDADVTLRLHNRLFANIEQDEKLNAIYQEIEV 533 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + G ID + + IA +L++ ++ + L+ L Sbjct: 534 PLVPVLSRMERTGVLIDDMKLSAQSQEIAVRLGELEQKAYEIAGQPF-NMNSPKQLQTIL 592 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300 F G+ ++ + S + +LA D L + + KL + L + ++ Sbjct: 593 FEQMGLPVIKKTPSGTPSTAEE-VLQELALDYPLPSVIMEYRGLAKLKSTYTDKLPKMIN 651 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ + + TGR S QN+P + Sbjct: 652 PHTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 686 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ Sbjct: 687 EGRRIRQAFVAPHGYKILAVDYSQIELRIMAHLSGDQALLDAFQQGKDIHAATAAEIMGV 746 Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFED 474 I++VS EQR K + L Y AK + ++ + ED Sbjct: 747 SIEQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 806 Query: 475 WEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKH 514 + H +++ + A+ + GTA +++KKA Sbjct: 807 TRSNAAQHGYVETIFGRRLHLPEITSRNVMRRKAAERAAINAPMQGTAADIIKKAMLLVD 866 Query: 515 Q-------GVLQLWKDLTEGFACVVQEGGSISA 540 Q G ++L + + V+E Sbjct: 867 QWIQEEGNGRVKLLMQVHDELVFEVEESCLTEI 899 >gi|255262095|ref|ZP_05341437.1| DNA polymerase I [Thalassiobium sp. R2A62] gi|255104430|gb|EET47104.1| DNA polymerase I [Thalassiobium sp. R2A62] Length = 932 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 94/533 (17%), Positives = 177/533 (33%), Gaps = 89/533 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L+D++++ + N ++ +F + G+D+ A+ GL + + Sbjct: 410 LKPMLQDDSILKIGQNMKYDAKIFARC-GVDVAPIDDTMLMSYAQNAGLHNHGMDTLSDR 468 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 I + +D + D + T L++ Sbjct: 469 LLGHTPIP-------IKSLLGTGKSAITFDRVDVAEAVKY------AAEDADITLRLWQH 515 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P ER L + + G ++D D + ++ AQ+ L+ +I + Sbjct: 516 LKPQLHVKGVTTVYETLERPLVPVLAEMEMTGIKVDRDTLSRMSNAFAQKMAGLEAEIHE 575 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + L LF GI+ + T + LA + L Sbjct: 576 LAGRSF-NVGSPKQLGEILFDEMGIEGGKKGK-TGAYATGADVLEDLAIEHELPGRVLDW 633 Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L ++ GR+ + GA+ TGR + QN+P + Sbjct: 634 RQLSKLKSTYTDALQNHINAETGRVHTSYSIAGAN-TGRLASTDPNLQNIPIRS------ 686 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA GK LV D + IE R+LA +A + Sbjct: 687 ------------------EEGRRIREAFIAEEGKVLVALDYSQIELRILAHVADIPSLKQ 728 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AFA+G DI+ T ++ F+ P+D+++ + R K + + Y G A+ + Sbjct: 729 AFADGMDIHAMTASEMFDVPLDQMTSDIRRQAKAINFGVIYGISGFGLARNLRIPRFEAQ 788 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKD 496 + ++ + T+ D A + A+ Sbjct: 789 GFIDRYFERFPGIRTYMDDTVAFAKEHGYVQTLFGRKINTPEIGAKGPQAGFAKRAAINA 848 Query: 497 KLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISAR 541 + GTA +++++A + LQ+ +L QE +AR Sbjct: 849 PIQGTAADVIRRAMVRMPDAIADQPAKMLLQVHDELLFEVENGAQEKLIETAR 901 >gi|161505500|ref|YP_001572612.1| DNA polymerase I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866847|gb|ABX23470.1| hypothetical protein SARI_03661 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 928 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 118/592 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L D+ V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDDKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNDEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQEG 535 A+ + GTA +++K+ AW Q +++ + + V +G Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKG 891 Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKGDLDAVSKRIHQLM 904 >gi|284923965|emb|CBG37064.1| DNA polymerase I [Escherichia coli 042] Length = 928 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 105/585 (17%), Positives = 200/585 (34%), Gaps = 106/585 (18%) Query: 7 DIETRSPQPLPKVGVW-AYAEQAVI---TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V ++A + + A+ + D P ++ + L L Sbjct: 355 DTETDSLDNISANLVGLSFAIEPSVAAYIPVAHDYLDAPDQI----SRERALELLKPLLE 410 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 DE + V N ++R + GI++ + T + + + LA + +H Sbjct: 411 DEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERWLKH 468 Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 T E GK F + ++ + G Y D + T +L ++ Sbjct: 469 KTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTLQLHLKM 512 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P + E L + I G +ID ++ E + +L++ + Sbjct: 513 WPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHE 572 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + S T L+ LF GI + + G S S + +LA D L ++ Sbjct: 573 IAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEY 630 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 631 RGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--------- 680 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I +V AD + IE R++A ++ + + Sbjct: 681 ---------------VRNEEGRRIRQAFIGPEDYVIVSADYSQIELRIMAHLSRDKGLLT 725 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 726 AFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQ 785 Query: 457 LDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA----------VK 495 + + + + + +A++ L++ D + Sbjct: 786 KYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAIN 845 Query: 496 DKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + GTA +++K+ AW Q +++ + + V + Sbjct: 846 APMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|327250490|gb|EGE62198.1| DNA polymerase I domain protein [Escherichia coli STEC_7v] Length = 605 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 200/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 32 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 81 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 82 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLA 139 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 140 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 183 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 184 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 243 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 244 EKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 301 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 302 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 357 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 358 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 396 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 397 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 456 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 457 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAA 516 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 517 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 567 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLEAVAKKIHQLM 581 >gi|56698655|ref|YP_169032.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] gi|56680392|gb|AAV97058.1| DNA polymerase I [Ruegeria pomeroyi DSS-3] Length = 933 Score = 297 bits (761), Expect = 3e-78, Method: Composition-based stats. Identities = 113/624 (18%), Positives = 214/624 (34%), Gaps = 93/624 (14%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDD-EPVKLWDRTEQSAMP----- 54 +D ET S L + + A + D + D+ + +P Sbjct: 349 AVDTETTSLNEMTADLVGISLAVEPGAACYIPLGHRDGDAGDLFGSDKLAEGQLPLQQTL 408 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L D ++ + N ++ +F + G+ + A GL + Sbjct: 409 DLLKPMLEDPAILKIGQNMKYDAKIFARY-GVAVAPIDDTMLLSYAMHGGLHGHGMDTLS 467 Query: 115 ALNFSEH----LTKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVE 168 S + GK+ I F K +ID Y A+ ++ WQLF R Sbjct: 468 ERYLSHTPIPIKPLLGSGKSAIT-FDKVAIDEATAYAAEDADITLRLWQLFKPQLHRAQV 526 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 T +++ L ER L + + G ++D +++ ++ AQ+ L+ +I +L Sbjct: 527 TT--VYETL------ERPLVPVLAEMEMHGVKVDREVLSRMSNAFAQKMAGLEAEIHELA 578 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF ++ T K + LA + L Sbjct: 579 GEPF-NVGSPAQVGEILFDKMSLEGGKKG-KTGKYSTPADVLEDLATEHELPARILDWRQ 636 Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L ++ D GR+ + GA+ TGR + QN+P + Sbjct: 637 LSKLKSTYTDALQTHINPDTGRVHTSYSITGAN-TGRLASTDPNLQNIPVRT-------- 687 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G L+ D + IE R+LA IA +AF Sbjct: 688 ----------------EEGRRIREAFVAEPGNVLLSLDYSQIELRILAHIADIPALKQAF 731 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 A+G DI+ T ++ F+ P+D+++ E R K + + Y G A+ + + Sbjct: 732 ADGLDIHAMTASEMFDVPLDQMTPEVRRRAKAINFGVIYGISGFGLARNLRIPRAEAQEF 791 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKL 498 + ++ + T+ D A + A+ + Sbjct: 792 IDRYFERFPGIRTYMDDTIAFAKEHGFVQTLFGRRIHTPEINAKGPHAGFARRAAINAPI 851 Query: 499 IGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 GTA +++++A + LQ+ +L A E +AR + Sbjct: 852 QGTAADVIRRAMVRMPDAIRDLPAKMLLQVHDELLFEVAEEAVEDTIAAARDIME--GAA 909 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVK 574 + DV +V+ + R +++ Sbjct: 910 DPAVRLDVRLVVDAGRGANWAEAH 933 >gi|153833784|ref|ZP_01986451.1| DNA polymerase I [Vibrio harveyi HY01] gi|148869842|gb|EDL68810.1| DNA polymerase I [Vibrio harveyi HY01] Length = 930 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 103/558 (18%), Positives = 189/558 (33%), Gaps = 105/558 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE V N ++ + + GI+ Sbjct: 381 AAYVPVAHDYLDAPQQL----DRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY-GIE 435 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141 + + T + + N + LAL F +H +GK + F + +D Sbjct: 436 MKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIDLD 493 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 Y D + T L RL + E L + Sbjct: 494 ----------------EASPYAAEDADVTLRLHNRLFANIEQDDKLKTVYEEIEMPLVPV 537 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID + IA +L++ ++ + + L+ LF G Sbjct: 538 LSRIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIAEQEF-NMNSPKQLQALLFEKMG 596 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + ++ + S + + +LA D L +L + KL + L + ++ GR Sbjct: 597 LPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGR 655 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 656 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 690 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ V Sbjct: 691 RQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDV 750 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479 S EQR K + L Y AK + ++ + ED A Sbjct: 751 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAA 810 Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ---- 515 S +++ + A+ + GTA +++KKA Q Sbjct: 811 SEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 870 Query: 516 ---GVLQLWKDLTEGFAC 530 G ++L + + Sbjct: 871 EGNGRVKLLMQVHDELVF 888 >gi|168263110|ref|ZP_02685083.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205348113|gb|EDZ34744.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 928 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|197263783|ref|ZP_03163857.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242038|gb|EDY24658.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 928 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 207/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ + A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLNAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLNAVAKRIHQLM 904 >gi|170769667|ref|ZP_02904120.1| DNA polymerase I [Escherichia albertii TW07627] gi|170121475|gb|EDS90406.1| DNA polymerase I [Escherichia albertii TW07627] Length = 928 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 109/613 (17%), Positives = 206/613 (33%), Gaps = 121/613 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------VPVAHDYLDAPEQI----SRERVLEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACL 114 L L DE + V N ++R + DI + ++L N + L Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + +H T E GK F + ++ + G Y D + T Sbjct: 462 AERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 505 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P + E L + I G +ID ++ E + + Sbjct: 506 LQLHLKMWPELQKHKGPLNVFENIEMPLVPVISRIERNGVKIDPKVLHNHSEELTLRLAE 565 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 566 LEKKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 623 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIAPQDHVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLN 778 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------------- 490 + + + + + +A++ + Sbjct: 779 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAG 838 Query: 491 --EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISAR 541 A+ + GTA +++K+ AW + +++ + + V ++ + A+ Sbjct: 839 AERAAINAPMQGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHDELVFEVHKDDLDVVAK 898 Query: 542 RVANVPRLVMRRH 554 ++ + R Sbjct: 899 KIHQLMENCTRLD 911 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651 Q + DI+ M A K +++ VHDE+V E D + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEKPRVRMIMQVHDELVFEVHKDDLDVVAKKIHQLM 904 >gi|16767264|ref|NP_462879.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415846|ref|YP_152921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182461|ref|YP_218878.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161617122|ref|YP_001591087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244255|ref|ZP_02669187.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444061|ref|YP_002043223.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448474|ref|YP_002048004.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197364776|ref|YP_002144413.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|224585810|ref|YP_002639609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|20141441|sp|Q9F173|DPO1_SALTY RecName: Full=DNA polymerase I; Short=POL I gi|16422560|gb|AAL22838.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56130103|gb|AAV79609.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62130094|gb|AAX67797.1| DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161366486|gb|ABX70254.1| hypothetical protein SPAB_04960 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402724|gb|ACF62946.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406778|gb|ACF66997.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197096253|emb|CAR61851.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|205336940|gb|EDZ23704.1| DNA polymerase I family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224470338|gb|ACN48168.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261249116|emb|CBG26977.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996282|gb|ACY91167.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160508|emb|CBW20038.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312915113|dbj|BAJ39087.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225284|gb|EFX50342.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322716955|gb|EFZ08526.1| putative acyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323132341|gb|ADX19771.1| putative xanthine/uracil permeases family protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 928 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|168232922|ref|ZP_02657980.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168821669|ref|ZP_02833669.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194469064|ref|ZP_03075048.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455428|gb|EDX44267.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205332830|gb|EDZ19594.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205341832|gb|EDZ28596.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320088405|emb|CBY98164.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 928 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|144453|gb|AAA23103.1| putative DNA polymerase [Citrus greening disease-associated bacterium] Length = 206 Score = 297 bits (760), Expect = 5e-78, Method: Composition-based stats. Identities = 189/206 (91%), Positives = 194/206 (94%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 MSKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQY Sbjct: 1 MSKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQY 60 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F E Sbjct: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPE 120 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HLTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL Sbjct: 121 HLTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPL 180 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLV 206 + ER LWLLDQ INDRGYRIDLDLV Sbjct: 181 NPEERTLWLLDQEINDRGYRIDLDLV 206 >gi|168237613|ref|ZP_02662671.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194736970|ref|YP_002116921.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|204930172|ref|ZP_03221149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|194712472|gb|ACF91693.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289392|gb|EDY28757.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204320576|gb|EDZ05778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 928 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 109/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVSKRIHQLM 904 >gi|238892277|ref|YP_002917011.1| DNA polymerase I [Klebsiella pneumoniae NTUH-K2044] gi|238544593|dbj|BAH60944.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 930 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + + + Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLTL 406 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L DE V+ V N ++R + DI + ++L + L Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P E L + + G +ID ++ + IAQ + Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y A+ Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489 + + + + + +A++ + Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840 Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W + +++ + + V + Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHK 892 Score = 41.3 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + K +++ VHDE+V E +V + LM Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 906 >gi|197247609|ref|YP_002148920.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197211312|gb|ACH48709.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 928 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|156972895|ref|YP_001443802.1| DNA polymerase I [Vibrio harveyi ATCC BAA-1116] gi|156524489|gb|ABU69575.1| hypothetical protein VIBHAR_00572 [Vibrio harveyi ATCC BAA-1116] Length = 930 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 103/558 (18%), Positives = 190/558 (34%), Gaps = 105/558 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE V N ++ + + GI+ Sbjct: 381 AAYVPVAHDYLDAPQQL----DRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY-GIE 435 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141 + + T + + N + LAL F +H +GK + F + +D Sbjct: 436 MKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIDLD 493 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 Y D + T L RL + E L + Sbjct: 494 ----------------EASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPV 537 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID + IA +L++ ++ + + L+ LF G Sbjct: 538 LSRIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIAEQEF-NMNSPKQLQALLFEKMG 596 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + +++ + S + + +LA D L +L + KL + L + ++ GR Sbjct: 597 LPVINKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGR 655 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 656 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 690 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ V Sbjct: 691 RQAFVAPTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDV 750 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479 S EQR K + L Y AK + ++ + ED A Sbjct: 751 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAA 810 Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ---- 515 S +++ + A+ + GTA +++KKA Q Sbjct: 811 SEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 870 Query: 516 ---GVLQLWKDLTEGFAC 530 G ++L + + Sbjct: 871 EGNGRVKLLMQVHDELVF 888 >gi|71902066|ref|ZP_00684106.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71728177|gb|EAO30368.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 384 Score = 297 bits (759), Expect = 5e-78, Method: Composition-based stats. Identities = 137/390 (35%), Positives = 185/390 (47%), Gaps = 56/390 (14%) Query: 335 RSEEILTQTIQALNRGET---IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 S+ ++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLAW Sbjct: 1 LSQPVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLAW 60 Query: 392 IAGEDWKIKAFA----------------------------------------NGEDIYVT 411 +AGE K+ AF G+DIY Sbjct: 61 LAGETPKLHAFRDFDTCQGVDGTWHSGEAITHGALRGAPITLQRNAEHEPIRQGDDIYKR 120 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 YA +F V+KEQR IGKV ELALGY GG F A+ +DL+ ++ + Sbjct: 121 AYAHSFGIAPQAVTKEQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAMAEQ-AALPP 179 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 E E+ +Q P F + D+ AC++ K+AWR H + WK L Sbjct: 180 LLLQEAVEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWKALQFAATDA 238 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTA--TS 585 ++ + + M+ + + + LPS R L Y+ + G SY+ T T Sbjct: 239 IRHPETAHT-----CCGITMQYSRAWLRMHLPSGRVLYYAAPRVDEHGALSYMGTHPMTR 293 Query: 586 QLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 + R TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F+ Sbjct: 294 KWTRITTYGGKLVENITQAVSRDVLAACMPAIEAAGYQIVLTVHDEIITEADDNAAFNAA 353 Query: 646 TLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L +LM P WA+GLPL AEG++ RYRK Sbjct: 354 HLAALMATPPPWAQGLPLAAEGFQTHRYRK 383 >gi|168467328|ref|ZP_02701165.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|200387731|ref|ZP_03214343.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|195630257|gb|EDX48897.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|199604829|gb|EDZ03374.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|322613070|gb|EFY10020.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619141|gb|EFY16024.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322626007|gb|EFY22819.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626535|gb|EFY23341.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632354|gb|EFY29102.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635166|gb|EFY31887.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642757|gb|EFY39346.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647922|gb|EFY44394.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650672|gb|EFY47073.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652855|gb|EFY49192.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657170|gb|EFY53450.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662344|gb|EFY58559.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666879|gb|EFY63055.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672149|gb|EFY68264.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675871|gb|EFY71943.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681715|gb|EFY77741.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684092|gb|EFY80101.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193364|gb|EFZ78579.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197721|gb|EFZ82854.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323200707|gb|EFZ85778.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207290|gb|EFZ92242.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211491|gb|EFZ96332.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218464|gb|EGA03172.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221056|gb|EGA05488.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226031|gb|EGA10250.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231711|gb|EGA15823.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323236042|gb|EGA20120.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239538|gb|EGA23587.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243870|gb|EGA27881.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323249232|gb|EGA33149.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250526|gb|EGA34409.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258980|gb|EGA42632.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260225|gb|EGA43848.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265344|gb|EGA48841.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270566|gb|EGA54012.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 928 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|198245003|ref|YP_002217922.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205354415|ref|YP_002228216.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859193|ref|YP_002245844.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238913940|ref|ZP_04657777.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|197939519|gb|ACH76852.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205274196|emb|CAR39214.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710996|emb|CAR35364.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326629546|gb|EGE35889.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 928 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|261342936|ref|ZP_05970794.1| hypothetical protein ENTCAN_09533 [Enterobacter cancerogenus ATCC 35316] gi|288314684|gb|EFC53622.1| DNA polymerase I [Enterobacter cancerogenus ATCC 35316] Length = 930 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 111/613 (18%), Positives = 208/613 (33%), Gaps = 121/613 (19%) Query: 7 DIETRSPQPLPKV----------GVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPS 55 D ET S + GV AY A+ + D P ++ DR + P Sbjct: 357 DTETDSLDNISANMVGLSFATAPGVAAY------VPVAHDYLDAPDQIPRDRVLELMKPV 410 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACL 114 L D+ + V N F+R + + GI++ + T + + + L Sbjct: 411 -----LEDDKALKVGQNLKFDRGILQNY-GIELRGIAF-DTMLESYILDSVAGRHDMDSL 463 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P E L + I G +ID ++ +AQ + Sbjct: 508 LQLHLKMWPKLQKHEGPLNVFQHIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTE 567 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ +L S L+ LF GI + + G S S + +LA D L Sbjct: 568 LEQKAHELAGEPFNLS-SPKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILQYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVAATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA + +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFK 449 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A + Sbjct: 721 RDKGLLTAFAEGQDIHRATAAEVFGLPLESVTNEQRRSAKAINFGLIYGMSAFGLSRQLN 780 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489 + + + + + +A++ + Sbjct: 781 IPRKESQKYMDLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAG 840 Query: 490 -PEFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISAR 541 A+ + GTA +++K+ AW K + +++ + + V ++ +R Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLEAVSR 900 Query: 542 RVANVPRLVMRRH 554 ++ + M Sbjct: 901 KIHELMENSMTLD 913 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 Q + DI+ M K +++ VHDE+V E +V + LM Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLEAVSRKIHELM 906 >gi|16762432|ref|NP_458049.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143920|ref|NP_807262.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213425460|ref|ZP_03358210.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289829363|ref|ZP_06546975.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288536|pir||AH0950 DNA polymerase I [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504737|emb|CAD03100.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi] gi|29139556|gb|AAO71122.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 928 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|322417979|ref|YP_004197202.1| DNA polymerase I [Geobacter sp. M18] gi|320124366|gb|ADW11926.1| DNA polymerase I [Geobacter sp. M18] Length = 892 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 125/594 (21%), Positives = 216/594 (36%), Gaps = 102/594 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQ-----AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 ID+ET S PL V YA A + + P +L ++ + L Sbjct: 317 AIDLETTSLNPLDASIVG-YAVSCLAHEAYYIPIGHRYLGAPEQLP----EALVLELLGP 371 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNF 118 L D + N ++ + +++ G+++ W T + A +S LAL + Sbjct: 372 LLTDPDRKKIGQNLKYDYQVLQQS-GVELAGI-WCDTMLAAYLVNPSRNSQGLDALALEY 429 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 +H A +A K ++ D RA G Y D +AT L + L+ Sbjct: 430 LDHRMI---SYAEVAGTGKCELNFSEVDLDRA---------GPYSCEDADATYLLHEILL 477 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P L D E L + + G ++D++L+ +L ++ +L+ I + Sbjct: 478 PKVREQGMEGLLFDVEMPLMKILADMELCGVKLDVELMKELSTGFGRQLIELEAKIHEHC 537 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 G + L LF G+ + ++G + + +LA++ + RL + Sbjct: 538 GGSF-NINSPKQLGEMLFERMGLAVGKKTKGKTGWSTNVEELERLAEEHEVARLLLQYRS 596 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 I KL + L V GR+ + + TGR S QN+P Sbjct: 597 ISKLKSTYTDALPRLVDPKTGRVHTSYN-QAITNTGRLSSSDPNLQNIP----------- 644 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 G +R IA G ++ AD + IE RVLA ++G+ +AF Sbjct: 645 -------------VRGEEGRGIRRAFIAEPGSLILSADYSQIELRVLAHLSGDRVLCEAF 691 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 A GEDI+ T A+ F + V+ E R KV+ + Y G AK Sbjct: 692 AAGEDIHRRTAAEVFGMFPELVTAEMRRQAKVINFGVIYGQGAFSLAKELGVAPKQAKAF 751 Query: 459 LQQFSQNVKSTSTFEDWEQAESH-------HLWMQDQYPEFAVKD--------------K 497 ++ + + +F D AE+ L + Q PE A K+ Sbjct: 752 IENYFERHSGARSFLDRCIAEAETCGFVTTILGRRLQIPEIASKNGNARAFAQRNATNYP 811 Query: 498 LIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + G+A +++K A + + ++Q+ +L +E R Sbjct: 812 IQGSAADIIKAAMIRVTRRMLEEKVASRLIMQVHDELVFEVPRNERELMEDLVR 865 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K +++ VHDE+V E P + L Sbjct: 812 IQGSAADIIKAAMIRVTRRMLEEKVASRLIMQVHDELVFEVPRNERELMEDLVR 865 >gi|322835075|ref|YP_004215102.1| DNA polymerase I [Rahnella sp. Y9602] gi|321170276|gb|ADW75975.1| DNA polymerase I [Rahnella sp. Y9602] Length = 934 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 116/593 (19%), Positives = 207/593 (34%), Gaps = 114/593 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 A +A A+ + D PV+L ++ + L L DE + V N F+R + L Sbjct: 382 AGKAAYLPVAHDYLDAPVQL----DRDEVLKQLKPILEDEKQLKVGQNLKFDRGVL---L 434 Query: 85 GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKG 138 DI K ++L + LA + H T E GK F + Sbjct: 435 RYDIELKGIAFDTMLESYVLDSVSGRHDMDSLADRYLGHKTVSFEEIAGKGKNQLTFNQI 494 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDL 187 ++ + Y D + T +L + L P +D E L Sbjct: 495 AL----------------EQAAPYAAEDADVTLQLHQALWPRIAESESLKTVFTDIEMPL 538 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + I G ID +++ + +A +L+ +L + S T L+ L+ Sbjct: 539 VPVLSHIERTGVLIDQNILAAHSKELAIRLNELENKAHELAEEPFNLS-STKQLQAILYE 597 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD 302 + ++ + G S + + +LA D L ++ + KL + L ++ Sbjct: 598 KQKLPILKKTPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPQ 656 Query: 303 -GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR S QN+P Sbjct: 657 SGRVHTSY-HQAVTATGRLSSSDPNLQNIP------------------------VRNDEG 691 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R IA ++ AD + IE R++A ++ ++ +KAFA G+DI+ T A+ F TP+ Sbjct: 692 RRIRQAFIAPKDYIILAADYSQIELRIMAHLSKDEGLLKAFAEGKDIHRATAAEVFGTPL 751 Query: 422 DKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-- 475 +KVS EQR K + L Y A + + + + + + Sbjct: 752 EKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQRYMDLYFERYPGVLEYMERTR 811 Query: 476 -------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 +S + + A+ + GTA +++K+A + Sbjct: 812 TQASEQGYVETLDGRRLYLPDIKSSNAMRRKGAERAAINAPMQGTAADIIKRAMIS---- 867 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVP-RLVMRRHKRDVHIVLPSSRRL 568 + W +++ + AR + V LV HK DV + R L Sbjct: 868 -VADW----------LKQPDAPRARIIMQVHDELVFEVHKDDVEVASEKIRNL 909 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 17/119 (14%) Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V + ++ RRL D+K + R Sbjct: 801 PGVLEYMERTRTQASEQGYVETLDGRRLYLPDIKSSNAM---RRKGAERAAINAP----- 852 Query: 601 IVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651 +Q + DI+ M + I++ VHDE+V E D + + +LM Sbjct: 853 -MQGTAADIIKRAMISVADWLKQPDAPRARIIMQVHDELVFEVHKDDVEVASEKIRNLM 910 >gi|152972672|ref|YP_001337818.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150957521|gb|ABR79551.1| DNA polymerase I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 930 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + + + Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLAL 406 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L DE V+ V N ++R + DI + ++L + L Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P E L + + G +ID ++ + IAQ + Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y A+ Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489 + + + + + +A++ + Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840 Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W + +++ + + V + Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHK 892 Score = 40.9 bits (94), Expect = 0.70, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + K +++ VHDE+V E +V + LM Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELNAVSKKIHELM 906 >gi|329999655|ref|ZP_08303472.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] gi|328538267|gb|EGF64411.1| DNA-directed DNA polymerase [Klebsiella sp. MS 92-3] Length = 930 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + + + Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLTL 406 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L DE V+ V N ++R + DI + ++L + L Sbjct: 407 LKPLLEDEKVLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P E L + + G +ID ++ + IAQ + Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y A+ Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489 + + + + + +A++ + Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840 Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W + +++ + + V + Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHK 892 Score = 41.3 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + K +++ VHDE+V E +V + LM Sbjct: 851 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 906 >gi|300714614|ref|YP_003739417.1| DNA polymerase I [Erwinia billingiae Eb661] gi|299060450|emb|CAX57557.1| DNA polymerase I [Erwinia billingiae Eb661] Length = 928 Score = 296 bits (758), Expect = 6e-78, Method: Composition-based stats. Identities = 105/592 (17%), Positives = 198/592 (33%), Gaps = 101/592 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S + + +A A+ + D P +L +++++ L L Sbjct: 354 DLETDSLDTLSANIVGISFAIEPGKAAYLPVAHDYLDAPAQL----DRNSVLERLKPLLE 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D ++ V N ++R + K DI + ++L +L + + Sbjct: 410 DPALLKVGQNLKYDRGVLKNY---DIELQGIKFDTMLESY-----ALSSVGSRHDMDTLS 461 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 ++ K + F + + ++ Y D + T +L ++ P + Sbjct: 462 SRWLNHKTV--SFEEIAGKGKKQLTFNQIDLE---QAAHYAAEDADVTLQLHLKMWPELE 516 Query: 183 GER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+ L + I G ID ++ + + +L++ +L Sbjct: 517 KEQGPKEVFENIEMPLLTVISRIERNGVLIDQGILAAHSKELTIRLAELEQKAHELAGEP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 S L+ LF GI + G S S + +LA D L ++ + K Sbjct: 577 FNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILENRGLAK 634 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L ++ GR+ + + TGR S QN+P Sbjct: 635 LKSTYTDKLPLMINPITGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------------- 679 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IAS G K+V AD + IE R++A ++ + + AFA G Sbjct: 680 ----------VRNEEGRRIRQAFIASKGHKIVAADYSQIELRIMAHLSQDKGLLSAFAEG 729 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQ 461 DI+ T A+ F +DKV+ EQR K + L Y A + A + Sbjct: 730 MDIHRATAAEVFGMALDKVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDL 789 Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500 + + + + + + + A+ + G Sbjct: 790 YFERYPGVLEYMESTRQQAAEKGYVSTLDGRRLYLPDINASNAMRRKAAERAAINAPMQG 849 Query: 501 TACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISAR 541 TA +++KKA A + ++Q+ +L E + R Sbjct: 850 TAADIIKKAMIAVDGWLTPQSAPDVKMIMQVHDELVFEVKTSEVEAATAKIR 901 >gi|82778962|ref|YP_405311.1| DNA polymerase I [Shigella dysenteriae Sd197] gi|309783771|ref|ZP_07678417.1| DNA polymerase I [Shigella dysenteriae 1617] gi|81243110|gb|ABB63820.1| PolA [Shigella dysenteriae Sd197] gi|308928354|gb|EFP73815.1| DNA polymerase I [Shigella dysenteriae 1617] Length = 928 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 108/591 (18%), Positives = 199/591 (33%), Gaps = 118/591 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------IPVAHDYLDAPDQI----SRERALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE + V N ++R + GI++ + T + + + LA Sbjct: 405 LKPLLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTRLESYILNSVAGRHDMDSLA 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 ERWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + I G +ID ++ E + +L Sbjct: 507 QLHLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 567 ERKAHEIAGEEFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQYPEFA------ 493 + + + + + +A++ L++ D Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLSDIKSSNGARRAAA 839 Query: 494 ----VKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++K+ AW Q +++ + + V + Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 904 >gi|269959443|ref|ZP_06173826.1| DNA polymerase I [Vibrio harveyi 1DA3] gi|269835880|gb|EEZ89956.1| DNA polymerase I [Vibrio harveyi 1DA3] Length = 930 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 104/558 (18%), Positives = 190/558 (34%), Gaps = 105/558 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L DE V N ++ + + GI+ Sbjct: 381 AAYVPVAHDYLDAPQQL----DRDWVLAQLKPILEDEAQAKVGQNLKYDASVLARY-GIE 435 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141 + + T + + N + LAL F +H +GK + F + +D Sbjct: 436 MKGIK-HDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIELD 493 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 Y D + T L RL + E L + Sbjct: 494 ----------------EASPYAAEDADVTLRLHNRLFANIEQDEKLKTVYEEIEMPLVPV 537 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID + IA +L++ ++ + + L+ LF G Sbjct: 538 LSRIERTGVLIDDMKLSAQSVEIAARLDELEQKAYEIAEQEF-NMNSPKQLQALLFEKMG 596 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + ++ + S + + +LA D L +L + KL + L + ++ GR Sbjct: 597 LPVIKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGR 655 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 656 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 690 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +AS G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ V Sbjct: 691 RQAFVASTGYKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIEDV 750 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479 S EQR K + L Y AK + ++ + ED A Sbjct: 751 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAA 810 Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWRAKHQ---- 515 S +++ + A+ + GTA +++KKA Q Sbjct: 811 SEQGFVETIFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 870 Query: 516 ---GVLQLWKDLTEGFAC 530 G ++L + + Sbjct: 871 EGNGRVKLLMQVHDELVF 888 >gi|254438732|ref|ZP_05052226.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] gi|198254178|gb|EDY78492.1| DNA polymerase I superfamily [Octadecabacter antarcticus 307] Length = 941 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 94/527 (17%), Positives = 181/527 (34%), Gaps = 77/527 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D++++ + N ++ +FK+ +GID+ A GL + Sbjct: 419 LKPMLEDDSILKIGQNMKYDAKIFKR-VGIDVDPIDDTMLMSYAMNAGLHRHGMDVLSEQ 477 Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171 + GK+ D+ Y A+ ++ W++F R Sbjct: 478 YLGHTPIPIKPLLGAGKSAKTFNRVPVEDAVRYAAEDADITLRLWEVFKPQLHR------ 531 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + ER L + + G ++D D + ++ AQ+ L++++ +L G Sbjct: 532 --KQVTSVYETMERPLVPVLAKMEMHGIKVDRDTLSRMSNAFAQKMAGLEDELYELAGGK 589 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF G++ + T +L +L+ S Sbjct: 590 F-NVGSPAQVGEILFDQMGLEGGKKGKNGKYATGADVLEDLATEHDLPGRVLDWRQLSKL 648 Query: 288 AILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L ++ GR+ + GA+ TGR S QN+P + Sbjct: 649 KSTYTDALQTHINAETGRVHTSYSITGAN-TGRLSSTDPNLQNIPIRT------------ 695 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA GK LV D + IE R+LA +A D +AF +G Sbjct: 696 ------------DEGRKIREAFIADEGKVLVALDYSQIELRILAHVANIDALKQAFRDGH 743 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T ++ FN P+D+++ + R K + + Y G A+ + + + ++ Sbjct: 744 DIHAMTASEMFNVPLDEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRY 803 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTA 502 + T+ D A + + A+ + GTA Sbjct: 804 FERFPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINAKGPGAGFAKRAAINAPIQGTA 863 Query: 503 CELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISAR 541 +++++A + LQ+ +L E +AR Sbjct: 864 ADVIRRAMIRMDDAIAHLPAKMLLQVHDELVFEVDKDAAEDLIAAAR 910 Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%) Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + D++ M ++L VHDE+V E + Sbjct: 859 IQGTAADVIRRAMIRMDDAIAHLPAKMLLQVHDELVFEVDKDAAEDL 905 >gi|167551523|ref|ZP_02345278.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323683|gb|EDZ11522.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 928 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKSGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 849 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|91224944|ref|ZP_01260203.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269964579|ref|ZP_06178818.1| DNA polymerase I [Vibrio alginolyticus 40B] gi|91190190|gb|EAS76460.1| DNA polymerase I [Vibrio alginolyticus 12G01] gi|269830706|gb|EEZ84926.1| DNA polymerase I [Vibrio alginolyticus 40B] Length = 928 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 100/559 (17%), Positives = 184/559 (32%), Gaps = 107/559 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + L L D V N ++ + + D Sbjct: 379 AAYVPVAHDYLDAPEQL----DRDWVLEQLKPILEDAAKAKVGQNLKYDASVLARY---D 431 Query: 88 IPSKRW-ICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSI 140 I K T + + N + LAL F +H +GK + F + + Sbjct: 432 IELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIEL 490 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189 + Y D + T L RL + E L Sbjct: 491 ----------------EQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVP 534 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + I G ID + I +L++ ++ + + L+ LF Sbjct: 535 VLSRIERTGVFIDEMKLSAQSVEITARLDELEKKAYEIAEQEF-NMNSPKQLQAILFEKM 593 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303 G+ +V + S + + +LA D L +L + KL + L + ++ G Sbjct: 594 GLPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTG 652 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P + A Sbjct: 653 RVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEAGRR 687 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I+ Sbjct: 688 IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIED 747 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474 VS EQR K + L Y AK + + + + + Sbjct: 748 VSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDTYFERYPGVMQYMEDTRST 807 Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ--- 515 + +S + + A+ + GTA +++KKA Q Sbjct: 808 AADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQ 867 Query: 516 ----GVLQLWKDLTEGFAC 530 G ++L + + Sbjct: 868 EEGNGRVKLLMQVHDELVF 886 >gi|262041646|ref|ZP_06014839.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040999|gb|EEW42077.1| DNA polymerase I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 927 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 200/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + + + Sbjct: 354 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLAL 403 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L DE V+ V N ++R + DI + ++L + L Sbjct: 404 LKPLLEDEKVLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 460 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 461 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 504 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P E L + + G +ID ++ + IAQ + Sbjct: 505 LQLHLKMWPKLQQHEGPLNIFQHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 564 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 565 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 622 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 623 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 679 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 680 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 717 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y A+ Sbjct: 718 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 777 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489 + + + + + +A++ + Sbjct: 778 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 837 Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W + +++ + + V + Sbjct: 838 AERAAINAPMQGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHK 889 Score = 41.3 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + K +++ VHDE+V E +V + LM Sbjct: 848 QGTAADIIKRAMIAVDEWLRSEKPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 903 >gi|283787470|ref|YP_003367335.1| DNA polymerase I [Citrobacter rodentium ICC168] gi|282950924|emb|CBG90601.1| DNA polymerase I [Citrobacter rodentium ICC168] Length = 928 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 198/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPS 55 D ET S + + GV AY A+ + D P ++ DR + P Sbjct: 355 DTETDSLDNITANLVGLSFAVEPGVAAY------VPVAHDYLDAPDQIARDRALELLKP- 407 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACL 114 L DE V V N ++R + GI++ + T + + + L Sbjct: 408 ----LLEDEKVSKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSL 461 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 462 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 505 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P + E L + + G ID ++ K E I + Sbjct: 506 LQLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVMIDPAVLHKHSEEITLRLAE 565 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 566 LEQKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 623 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNEEGRRIRQAFIPPKDHVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P++ V+ EQR K + L Y A+ Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLETVTNEQRRSAKAINFGLIYGMSAFGLARQLN 778 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------------- 490 + + + + + +A++ + Sbjct: 779 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAG 838 Query: 491 --EFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W Q +++ + + V + Sbjct: 839 AERAAINAPMQGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELVFEVHK 890 Score = 38.2 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + +++ VHDE+V E V + LM Sbjct: 849 QGTAADIIKRAMIAVDGWLESEQPRVRMIMQVHDELVFEVHKDDLDVVSKKIHQLM 904 >gi|12002056|gb|AAG43170.1|AF071212_1 DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 928 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V++EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTREQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 840 ERAAINAPTQGTAADIIKRAMIAVDAWIQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 899 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 900 IHQLMENCTRID 911 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M + +++ VHDE+V E +V + LM Sbjct: 848 TQGTAADIIKRAMIAVDAWIQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 904 >gi|206576415|ref|YP_002241257.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288937896|ref|YP_003441955.1| DNA polymerase I [Klebsiella variicola At-22] gi|206565473|gb|ACI07249.1| DNA polymerase I [Klebsiella pneumoniae 342] gi|288892605|gb|ADC60923.1| DNA polymerase I [Klebsiella variicola At-22] Length = 930 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 110/592 (18%), Positives = 201/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + + + Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLAL 406 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L DE ++ V N ++R + DI + ++L + L Sbjct: 407 LKPLLEDEKLLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507 Query: 171 RELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P E L + + G +ID ++ + IAQ + Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P+D VS EQR K + L Y A+ Sbjct: 721 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489 + + + + + +A++ + Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840 Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W K Q +++ + + V + Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHK 892 Score = 40.5 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + +++ VHDE+V E +V + LM Sbjct: 851 QGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 906 >gi|237807112|ref|YP_002891552.1| DNA polymerase I [Tolumonas auensis DSM 9187] gi|237499373|gb|ACQ91966.1| DNA polymerase I [Tolumonas auensis DSM 9187] Length = 910 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 97/562 (17%), Positives = 195/562 (34%), Gaps = 103/562 (18%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A A+ + P +L ++ + L L D T + V + F+R + + GI Sbjct: 360 DAAYLPLAHDYLGAPEQL----DREQTLAKLKPLLEDPTRLKVGQHLKFDRNVLRNH-GI 414 Query: 87 DIPSKRWICTSVLARTNGLPSS---LKNACL-ALNFSEHLTKMEEGKALIAR-FCKGSID 141 + + T + + +S + + LN++ + GK + F + ++ Sbjct: 415 HLQGIAF-DTMLESYVLNSTASRHNMDDLAKKYLNYTTQTFEDVAGKGVKQLTFNQVELE 473 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 + Y D + T L + L P L + E L + Sbjct: 474 KAAF----------------YAAEDADITLRLHQTLWPQVEKEPALKSLLLEMELPLAEV 517 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G ID L+ + I +L+ ++ G + L LF Sbjct: 518 LSDMERTGALIDPFLLQNQSQQIEVRLAELESQAHEIAGGPF-NLGSPKQLGEVLFEKLQ 576 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + ++ + S + +LA D L +L ++ KL + L ++ GR Sbjct: 577 LPVIKKTPKGAPSTAEE-VLQELAYDYPLPKLLLEHRSLSKLKSTYTDKLPLMIAPSTGR 635 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 636 VHTSY-HQAVTATGRLSSSDPNLQNIPVRT------------------------EEGRRI 670 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A +G K+V AD + IE R++A ++ +D ++AFA+G+DI+ T A+ N + V Sbjct: 671 RQAFVADHGYKIVAADYSQIELRIMAHLSEDDGLLQAFAHGQDIHRATAAEIMNITPEAV 730 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475 + EQR K + L Y AK + ++ + T+ + Sbjct: 731 TSEQRRNAKAINFGLIYGMSAFGLAKQLGIPRGEAQRYMDRYFERYPGVLTYMERTREQA 790 Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK------ 513 ++ ++ ++ A+ + GTA +++K+A Sbjct: 791 EQAGYVETLFGRRLYLPDIKAKNMGLRKAAERAAINAPMQGTAADIIKRAMIKLADWIKT 850 Query: 514 -HQGVLQLWKDLTEGFACVVQE 534 G +++ + + V+E Sbjct: 851 CDNGTIRMVMQVHDELVFEVRE 872 >gi|809180|pdb|1KLN|A Chain A, Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) MutantDNA Complex Length = 605 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 104/568 (18%), Positives = 194/568 (34%), Gaps = 108/568 (19%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 GV AY A+ + D P ++ + L L DE + V N ++R + Sbjct: 55 GVAAY------IPVAHDYLDAPDQI----SRERALELLKPLLEDEKALKVGQNLKYDRGI 104 Query: 80 FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134 GI++ + T + + + LA + +H T E GK Sbjct: 105 LANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 162 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDG 183 F + ++ + G Y D + T +L ++ P + Sbjct: 163 FNQIAL----------------EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENI 206 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + I G +ID ++ E + +L++ ++ S T L+ Sbjct: 207 EMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLS-STKQLQT 265 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298 LF GI + + G S S + +LA D L ++ + KL + L Sbjct: 266 ILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM 324 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 ++ GR+ + + TGR S QN+P Sbjct: 325 INPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VR 359 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F Sbjct: 360 NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 419 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P++ V+ EQR K + L Y A+ + + + + Sbjct: 420 GLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 479 Query: 474 DWEQAES-----------HHLWMQDQYPEFA----------VKDKLIGTACELVKK---- 508 + +A++ L++ D + + GTA +++K+ Sbjct: 480 ERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIA 539 Query: 509 --AWRAKHQGVLQLWKDLTEGFACVVQE 534 AW Q +++ + + V + Sbjct: 540 VDAWLQAEQPRVRMIMQVHDELVFEVHK 567 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581 >gi|54293062|ref|YP_125477.1| DNA polymerase I [Legionella pneumophila str. Lens] gi|53752894|emb|CAH14329.1| DNA polymerase I [Legionella pneumophila str. Lens] Length = 896 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 110/599 (18%), Positives = 206/599 (34%), Gaps = 109/599 (18%) Query: 6 IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 ID ET + L + + E A A+ D +L + + + L L Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEENASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120 + + + N ++ + K GI + R+ T + + LAL + Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLALKYLG 436 Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + T + GK RF + ++ G Y D + T L + Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVEKA----------------GIYAAEDADITLRLHHK 480 Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L P+ D E L + + G ID ++ K + ++ K L+++ ++L Sbjct: 481 LYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAIQL 540 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L+ LF + +V + T + + S + +LA D L + Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ KL + L + ++ T + TGR S QN+P + Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA G ++ AD + IE R++A ++ +D ++AF Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 ANG DI+ T ++ F T +D VSKEQR K + L Y AK Sbjct: 695 ANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 + + + + + + ++H +L Q A+ Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814 Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA +++KK A + ++Q+ +L E ++ Sbjct: 815 MQGTAADIIKKTMLAVSNWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLME 873 >gi|290513119|ref|ZP_06552482.1| DNA polymerase I [Klebsiella sp. 1_1_55] gi|289774501|gb|EFD82506.1| DNA polymerase I [Klebsiella sp. 1_1_55] Length = 930 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 201/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + + + Sbjct: 357 DTETDSLDNISANMVGLSFAVEPGVAAY------VPVAHDYLDAPDQIP----RERVLAL 406 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L DE ++ V N ++R + DI + ++L + L Sbjct: 407 LKPLLEDEKLLKVGQNLKYDRGILANY---DIELRGIAFDTMLESYILDSVAGRHDMDSL 463 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 464 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 507 Query: 171 RELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P E L + + G +ID ++ + IAQ + Sbjct: 508 LQLHLKMWPKLQQHEGPLNIFKHIEMPLVPVLSRVERNGVKIDPAVLHAHSQEIAQRLVE 567 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 568 LEQRAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 625 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 626 PKVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 682 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 683 ----------------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 720 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AF+ G+DI+ T A+ F P+D VS EQR K + L Y A+ Sbjct: 721 RDKGLLTAFSEGKDIHRATAAEVFGLPLDSVSSEQRRSAKAINFGLIYGMSAFGLARQLN 780 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489 + + + + + +A++ + Sbjct: 781 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAG 840 Query: 490 -PEFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W K Q +++ + + V + Sbjct: 841 AERAAINAPMQGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHK 892 Score = 40.5 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + +++ VHDE+V E +V + LM Sbjct: 851 QGTAADIIKRAMIAVDEWLRKEQPRVRMIMQVHDELVFEVHKDELDAVSKKIHELM 906 >gi|296105444|ref|YP_003615590.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059903|gb|ADF64641.1| DNA polymerase I [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 930 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 108/596 (18%), Positives = 206/596 (34%), Gaps = 106/596 (17%) Query: 7 DIETRSPQPLPKVGVW-AYAEQAVI---TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V ++A + I A+ + D P +L + + L L Sbjct: 357 DTETDSLDNITANMVGLSFATEPGIAAYVPVAHDYLDAPEQL----SRERVLELLKPILE 412 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 D+ + V N ++R + + GI++ + T + + + L+ + +H Sbjct: 413 DDNALKVGQNLKYDRGILQNY-GIELRGIAF-DTMLESYILDSVAGRHDMDSLSDRWLKH 470 Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 T E GK F + ++ + G Y D + T +L ++ Sbjct: 471 KTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTLQLHLKM 514 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P + E L + I G +ID ++ +AQ +L++ + Sbjct: 515 WPKLQKHEGPLNVFQNIEMPLVPVLSRIERNGVKIDPTVLHNHSGELAQRLTELEQKAHE 574 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L S L+ LF GI + + G S S + +LA D L ++ Sbjct: 575 LAGEPFNLS-SPKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEY 632 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 633 RGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVAATGRLSSTDPNLQNIP--------- 682 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA + +V AD + IE R++A ++ + + Sbjct: 683 ---------------VRNEEGRRIRQAFIAPDDYLIVSADYSQIELRIMAHLSRDKGLLT 727 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456 AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 728 AFAEGKDIHRATAAEVFGLPLDSVTNEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQ 787 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVK 495 + + + + + +A++ + A+ Sbjct: 788 KYMDLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDIKSSNAARRAGAERAAIN 847 Query: 496 DKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA +++K+ AW K + +++ + + V + S + + Sbjct: 848 APMQGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLDSVSKTIH 903 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M K +++ VHDE+V E SV T+ LM Sbjct: 851 QGTAADIIKRAMIAVDAWLEKEKPRVKMIMQVHDELVFEVHKDDLDSVSKTIHELM 906 >gi|251791718|ref|YP_003006439.1| DNA polymerase I [Dickeya zeae Ech1591] gi|247540339|gb|ACT08960.1| DNA polymerase I [Dickeya zeae Ech1591] Length = 928 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 99/576 (17%), Positives = 197/576 (34%), Gaps = 104/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + D P++L ++ + + L L DE+V + N F++ + + GID Sbjct: 380 AAYLPLGHDYLDAPMQL----DRDKVLAVLKPLLEDESVAKIGQNLKFDKGVMARY-GID 434 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + L+ + +H T E GK F + ++ Sbjct: 435 LRGIAF-DTMLESYVLDSVAGRHDMDSLSDRYLQHKTITFEEIAGKGKNQLTFNQIPLEQ 493 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI----PLSD-------GERDLWLLD 191 Y D + T L + L P + + L + Sbjct: 494 AAV----------------YAAEDADVTLRLHETLWAKLEPQPELCKVFQNIDMPLVPVL 537 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ID ++ + + + Q +L+ +L S L L+ + Sbjct: 538 SRMERTGVLIDTTILGEHSQELTQRLAELEVQAHELAGEAFNLS-SPKQLGTILYEKLQL 596 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLR 306 ++ + S + + +LA D L +L + KL + L + ++ + Sbjct: 597 PVIKKTPKGAPST-NEEVLAELALDHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRV 655 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + TGR S QN+P +R Sbjct: 656 HTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNEQGRRIRQ 691 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 IA G ++ AD + IE R++A ++ + ++AF+NG DI+ T A+ F P+D+V+ Sbjct: 692 AFIAPEGYHILAADYSQIELRIMAHLSRDAGLLRAFSNGLDIHRATAAEVFGLPLDRVTT 751 Query: 427 EQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTSTF 472 EQR K + L Y A+ + + +Q++ + + + Sbjct: 752 EQRRSAKAINFGLIYGMSAFGLSRQLAIPRNEAQKYMNLYFERYPGVQEYMERTRQQAAD 811 Query: 473 EDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------- 514 + + S + + A+ + GTA +++KKA A Sbjct: 812 QGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAINAPMQGTAADIIKKAMIAIDGWLQQEK 871 Query: 515 ---QGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 ++Q+ +L V + S R + Sbjct: 872 PLVTMLMQVHDELVFEVHHSVLDEASAKIRNLMEGC 907 >gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605 Score = 295 bits (756), Expect = 1e-77, Method: Composition-based stats. Identities = 104/568 (18%), Positives = 194/568 (34%), Gaps = 108/568 (19%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 GV AY A+ + D P ++ + L L DE + V N ++R + Sbjct: 55 GVAAY------IPVAHDYLDAPDQI----SRERALELLKPLLEDEKALKVGQNLKYDRGI 104 Query: 80 FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134 GI++ + T + + + LA + +H T E GK Sbjct: 105 LANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLT 162 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDG 183 F + ++ + G Y D + T +L ++ P + Sbjct: 163 FNQIAL----------------EEAGRYAAEDADVTLQLHLKMWPDLQKHKGPLNVFENI 206 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + I G +ID ++ E + +L++ ++ S T L+ Sbjct: 207 EMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKAHEIAGEEFNLS-STKQLQT 265 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298 LF GI + + G S S + +LA D L ++ + KL + L Sbjct: 266 ILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM 324 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 ++ GR+ + + TGR S QN+P Sbjct: 325 INPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VR 359 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R IA +V AD + IE R++A ++ + + AFA G+DI+ T A+ F Sbjct: 360 NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 419 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P++ V+ EQR K + L Y A+ + + + + Sbjct: 420 GLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 479 Query: 474 DWEQAES-----------HHLWMQDQYPEFA----------VKDKLIGTACELVKK---- 508 + +A++ L++ D + + GTA +++K+ Sbjct: 480 ERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADIIKRAMIA 539 Query: 509 --AWRAKHQGVLQLWKDLTEGFACVVQE 534 AW Q +++ + + V + Sbjct: 540 VDAWLQAEQPRVRMIMQVHDELVFEVHK 567 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 526 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLM 581 >gi|326625711|gb|EGE32056.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 884 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 311 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 360 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 361 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 418 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 419 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 462 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 463 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 522 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 523 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 580 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 581 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 636 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 637 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 675 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 676 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 735 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 736 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 795 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 796 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 855 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 856 IHQLMENCTRID 867 Score = 39.7 bits (91), Expect = 1.4, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 805 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 860 >gi|237727972|ref|ZP_04558453.1| DNA polymerase I [Citrobacter sp. 30_2] gi|226910229|gb|EEH96147.1| DNA polymerase I [Citrobacter sp. 30_2] Length = 928 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 109/592 (18%), Positives = 201/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPS 55 D ET S + + GV AY A+ + D P ++ DR + P Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQIARDRALELLKP- 407 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACL 114 L DE V N ++R + GI++ + T + + + L Sbjct: 408 ----LLEDENAHKVGQNLKYDRGILANY-GIELRGITF-DTMLESYILNSVAGRHDMDSL 461 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 462 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 505 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P + + L + + G +ID ++ K E + Q + Sbjct: 506 LQLHLKMWPELQQHKGPLNVFENIDMPLVPVLSRVERNGVKIDPAVLHKHSEELTQRLNE 565 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 566 LEQKAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 623 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A+ Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTSEQRRSAKAINFGLIYGMSAFGLARQLN 778 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------------- 490 + + + + + +A++ + Sbjct: 779 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAG 838 Query: 491 --EFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W Q +++ + + V + Sbjct: 839 AERAAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + +++ VHDE+V E SV + LM Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLM 904 >gi|330858980|emb|CBX69339.1| DNA polymerase I [Yersinia enterocolitica W22703] Length = 612 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 63 AAYLPLAHDYLDAPAQL----DRDWVLAQLKPLLEDDKALKVGQNLKFDQSMLARY-GID 117 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 118 LRGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 174 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 175 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 220 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID ++++ + + +L++ +L + + L++ L+ + Sbjct: 221 SRIERTGVLIDQNILVAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQVILYEKQKL 279 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 280 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 338 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 339 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 373 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F ++KV+ Sbjct: 374 QAFIAPEGYRIMAADYSQIELRIMAHLSQDKGLLAAFAAGKDIHRATAAEVFGLSLEKVT 433 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 434 NEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 493 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 494 EQGYVTTLDGRRLYLPDIHSRNATRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 553 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V E R + Sbjct: 554 PEPLVRVIMQVHDELVFEVHESVLESAEQKIRELME 589 >gi|197286655|ref|YP_002152527.1| DNA polymerase I [Proteus mirabilis HI4320] gi|194684142|emb|CAR45571.1| DNA polymerase I [Proteus mirabilis HI4320] Length = 932 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 111/617 (17%), Positives = 202/617 (32%), Gaps = 109/617 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP-SDLLQY 60 D ET S + A + ++A + +P ++L Sbjct: 358 DTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVLTA 407 Query: 61 LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L+ D+T++ + N F+R + + GI++ + T + + + S LA Sbjct: 408 LKPILEDKTILKIGQNLKFDRGIMENE-GIELNGI-YFDTMLESYVLNSVSSRHDMDTLA 465 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H T E IA KG + + +A Y D + T L + Sbjct: 466 EKHLNHKTTTFE---EIAGKGKGQLTFNQIEVEQAT---------LYAAEDADITLLLHQ 513 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P D E L + + +G ID ++ + I Q +++++ Sbjct: 514 ALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKET 573 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L S L+ LF + ++ + S + + LA L RL Sbjct: 574 FALAGQEFNLS-SPKQLQEILFEKLNLPIIKKTPKGAPST-NEEVLEALAHSHELPRLIL 631 Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V+S + T + TGR S QN+P Sbjct: 632 EHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP-------- 683 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA +G K+V AD + IE R++A ++ + + Sbjct: 684 ----------------VRNEEGRRIRQAFIARDGFKIVAADYSQIELRIMAHLSQDKGLL 727 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AFA G+DI+ T ++ F P+D+V+ EQR K + L Y A + Sbjct: 728 DAFAQGKDIHRATASEVFGIPLDEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEA 787 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAV 494 + + + + + + ++ + A+ Sbjct: 788 QRYMDLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAI 847 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + GTA +++KKA A + V + V V + + Sbjct: 848 NAPMQGTAADIIKKAMIAVD-------NWICHECPDDVHMIMQVHDELVFEVRESYLEKA 900 Query: 555 KRDVHIVLPSSRRLVYS 571 +H ++ SS L Sbjct: 901 NAMIHKLMESSMELAIP 917 >gi|28896881|ref|NP_796486.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|260365931|ref|ZP_05778425.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] gi|260877781|ref|ZP_05890136.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|260895569|ref|ZP_05904065.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|28805089|dbj|BAC58370.1| DNA polymerase I [Vibrio parahaemolyticus RIMD 2210633] gi|308088487|gb|EFO38182.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus Peru-466] gi|308089919|gb|EFO39614.1| DNA-directed DNA polymerase [Vibrio parahaemolyticus AN-5034] gi|308113417|gb|EFO50957.1| DNA polymerase I family protein [Vibrio parahaemolyticus K5030] Length = 931 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 97/563 (17%), Positives = 185/563 (32%), Gaps = 111/563 (19%) Query: 33 CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82 ++A D+ + L L D+ V N ++ + + Sbjct: 373 LSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLAR 432 Query: 83 TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136 GI++ ++ T + + N + LAL F +H +GK + F Sbjct: 433 Y-GIEMKGIKY-DTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FN 489 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185 + + + Y D + T L RL + E Sbjct: 490 QIEL----------------EQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEM 533 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I G ID + IA ++L++ ++ + + L+ L Sbjct: 534 PLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEF-NMNSPKQLQAIL 592 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300 F G+ +V + S + + +LA D L +L + KL + L + ++ Sbjct: 593 FEKMGLPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMIN 651 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ + + TGR S QN+P + Sbjct: 652 PSTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 686 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ Sbjct: 687 EGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGV 746 Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474 ID+VS EQR K + L Y AK + ++ + + + Sbjct: 747 SIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 806 Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + +S + + A+ + GTA +++KKA Sbjct: 807 TRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 866 Query: 515 Q-------GVLQLWKDLTEGFAC 530 Q G ++L + + Sbjct: 867 QWIQEEGNGRVKLLMQVHDELVF 889 >gi|226327657|ref|ZP_03803175.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] gi|225204183|gb|EEG86537.1| hypothetical protein PROPEN_01529 [Proteus penneri ATCC 35198] Length = 949 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 107/602 (17%), Positives = 200/602 (33%), Gaps = 113/602 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP-SDLLQY 60 D ET S + A + ++A + + +P +D+L Sbjct: 375 DTETDSLNNI----------DARLIGMSFAIEPGKAAYIPLRHEYLDAPEQLPVNDVLAA 424 Query: 61 LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L+ D+ ++ + N F+R + + GI++ + T + + + + LA Sbjct: 425 LKPILEDKNILKIGQNLKFDRGIMENE-GIELNGIHF-DTMLESYVLNSVSNRHDMDTLA 482 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H T E IA KG + + +A Y D + T L + Sbjct: 483 EKHLNHKTTTFE---EIAGKGKGQLTFNQIEVEQAT---------LYAAEDADITLLLHQ 530 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P D E L + + +G ID ++ + I Q +++++ Sbjct: 531 ALYPQIEAIEPLKHVYRDIEMPLVPVLSRMERKGVLIDAQVLAVQSQEITQRLAEIEKET 590 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L S L+ LF + ++ + S + + +LA L RL Sbjct: 591 FALAGQEFNLS-SPKQLQEILFDKLQLPVIKKTPKGAPST-NEEVLEELAHSHELPRLIL 648 Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V+S + T + TGR S QN+P Sbjct: 649 EHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP-------- 700 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G K+V AD + IE R++A ++ + + Sbjct: 701 ----------------VRNEEGRRIRQAFIAREGFKIVAADYSQIELRIMAHLSQDKGLL 744 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AFA G+DI+ T ++ F P+++V+ EQR K + L Y A + Sbjct: 745 DAFAQGKDIHRATASEVFGIPLEEVTSEQRRSAKAINFGLIYGMSAFGLSQQIGVERREA 804 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + + + S + + A+ Sbjct: 805 QRYMDLYFERYPGVLDYMERTRKQASEQGYVETLEGRRLYLPEINSKNAIRRKASEREAI 864 Query: 495 KDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +++KKA A ++Q+ +L E +I ++ Sbjct: 865 NAPMQGTAADIIKKAMIAVDNWICNECPADVHMIMQVHDELVFEVRESYLENANIMIHKL 924 Query: 544 AN 545 Sbjct: 925 ME 926 >gi|290477056|ref|YP_003469968.1| multifunctional DNA polymerase I [Xenorhabdus bovienii SS-2004] gi|289176401|emb|CBJ83208.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus bovienii SS-2004] Length = 932 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 95/568 (16%), Positives = 185/568 (32%), Gaps = 102/568 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + D P +L D + + L L D + + N F+R + + D Sbjct: 384 AAYLPLGHDYLDAPEQL-DL---HEVLAALKPLLEDANLPKIGQNLKFDRGVLARY---D 436 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLA---LNFSEHLTKMEEGKALIAR-FCKGSID 141 + + ++L N + LA L + + GK F + + Sbjct: 437 VALNGIVFDTMLESYVLNSVSGRHDMDSLADRHLGYKTTTFEEIAGKGKKQLTFNQIPL- 495 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190 + +Y D + T L + + P D E L + Sbjct: 496 ---------------EEAAKYAAEDADVTLRLHQVMYPQIDSVPTLKSVFQNIEMPLVPV 540 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID + + I +L++ +L + L++ LF Sbjct: 541 LSRIERTGVLIDAQTLAEHSTEITARLGELEKAAYELAGEEFNLA-SPKQLQVILFEKLN 599 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305 + ++ + S + + +LA + L R+ + KL + L + V+ + Sbjct: 600 LPVLKKTPNGAPST-NEEVLEELADNHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTKR 658 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +R Sbjct: 659 VHTSYHQAVTATGRLSSRDPNLQNIP------------------------VRNDEGRRIR 694 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++ AD + IE R++A ++ + ++AFA G+DI+ T A+ F P+++V+ Sbjct: 695 QAFIAPEGYCIMAADYSQIELRIMAHLSQDKGLLEAFAQGKDIHSATAAEVFGVPLEEVT 754 Query: 426 KEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW------ 475 EQR K + L Y A + + + + + + Sbjct: 755 SEQRRSAKAINFGLIYGMSAFGLSRQLSIPRGEAQRYMDLYFERYPGVLAYMERTRQQAA 814 Query: 476 ---------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA------WRAKH 514 +S + + A+ + GTA +++K A W Sbjct: 815 EHGFVETLEGRRLYLPDIKSRNAMRRKASEREAINAPMQGTAADIIKLAMIAVDNWIVSE 874 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARR 542 Q +++ + + V E +A + Sbjct: 875 QPNVRMIMQVHDELVFEVHESELATAEQ 902 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 16/100 (16%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 + RRL D+K + A+ RE +Q + DI+ M Sbjct: 818 FVETLEGRRLYLPDIKSRNAMRRKAS---EREAINAP------MQGTAADIIKLAMIAVD 868 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 + +++ VHDE+V E ++ + + LM Sbjct: 869 NWIVSEQPNVRMIMQVHDELVFEVHESELATAEQKISELM 908 >gi|262364151|gb|ACY60708.1| DNA polymerase I [Yersinia pestis D182038] Length = 750 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 98/576 (17%), Positives = 198/576 (34%), Gaps = 107/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D+ + V N F++ + + GID Sbjct: 201 AAYLPLAHDYLDAPPQL----DRDWVLATLKPLLEDDKALKVGQNLKFDKSMLARY-GID 255 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 256 LKGIAF-DTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 312 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D + T +L L P + E L + Sbjct: 313 --------------EQAGPYAAEDADVTLQLHLVLWPKLQQSEGLKRVFQEIEMPLLPIL 358 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID +++ + + +L++ +L + + L+ L+ + Sbjct: 359 SRIERTGVLIDQNILAAHSKELTIRLDELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 417 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 418 PILKKTPGGAAST-NEEVLAELALDYPLPKVILEYRGLAKLKSTYTDKLPLMINPVSGRV 476 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 477 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 511 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++ AD + IE R++A ++ ++ + AFA G+DI+ T A+ F +P++KV+ Sbjct: 512 QAFIAPKGYCIMAADYSQIELRIMAHLSQDNGLLAAFAAGQDIHRATAAEVFGSPLEKVT 571 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 572 TEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 631 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 632 EQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDGWLQQE 691 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V + R + Sbjct: 692 PEPLVRVIMQVHDELVFEVHESVLQSAEQKIRELME 727 >gi|326793522|ref|YP_004311342.1| DNA polymerase I [Marinomonas mediterranea MMB-1] gi|326544286|gb|ADZ89506.1| DNA polymerase I [Marinomonas mediterranea MMB-1] Length = 919 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 105/589 (17%), Positives = 199/589 (33%), Gaps = 99/589 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V V A +A A+ ++D P +L ++ + L +L Sbjct: 347 DTETTSLNYMQAELVGVSVAIEAGKAAYIPVAHDYEDAPEQL----DRDWVLEQLKPWLE 402 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 DE V + ++ + DI + ++L + + Sbjct: 403 DEGKAKVGQHLKYDANVLNNY---DITLRGIKFDTMLESYV-----FNSTGTRHDMDSLS 454 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 +K + +F + ++ Y D + T L + ++P Sbjct: 455 SKFLGHSTV--KFEDIAGKGAKQKTFNQIDLE---QAAFYAAEDADITLRLHQAILPKLE 509 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 SD E L + + G ID D + IA ++++ + Sbjct: 510 KTPELVSVFSDIELPLVPVLAKMEQTGALIDPDRLHAQSAEIASRLQEVEIKAHEEAGQE 569 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 S L+ LF G+ ++ + S + + +LA++ L RL ++ K Sbjct: 570 FNLS-SPKQLQEILFEKQGLPVIKKTPKGQPST-AEPILQELAENYELPRLIMEHRSLAK 627 Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + L E + GR+ + + TGR S QN+P + Sbjct: 628 LKSTYTDKLPEMIQHTGRIHTSY-HQAVTATGRLSSTDPNLQNIPIRT------------ 674 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A G KLV AD + IE R++A ++ + + AFA+ E Sbjct: 675 ------------QEGRRIRQAFVAPEGHKLVAADYSQIELRIMAHLSQDKGLLDAFAHDE 722 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462 D++ T A+ F +D V+ EQR K + L Y AK +Q++ Sbjct: 723 DVHKATAAEVFEVAVDDVTAEQRRRAKAINFGLIYGMSAFGLAKQLGISRPEAQKYVQRY 782 Query: 463 SQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGT 501 + T+ + + ++ + M+ A+ + G+ Sbjct: 783 FERYPGVRTYMETTRENAKEKGYVETIFGRRLYLPEIKARNAMMRQAAERTAINAPMQGS 842 Query: 502 ACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISA 540 A +++K+A H + ++Q+ +L A E Sbjct: 843 AADIIKRAMIKMHNWLADTDLGVKMIMQVHDELIFEVAEKDLEAAQAKI 891 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 16/94 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618 RRL ++K + + A R +Q + DI+ M T Sbjct: 811 GRRLYLPEIKARNAMMRQAA---ERTAINAP------MQGSAADIIKRAMIKMHNWLADT 861 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 G +++ VHDE++ E + + + +M Sbjct: 862 DLGVKMIMQVHDELIFEVAEKDLEAAQAKIIDIM 895 >gi|328471656|gb|EGF42533.1| DNA polymerase I [Vibrio parahaemolyticus 10329] Length = 930 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 97/563 (17%), Positives = 185/563 (32%), Gaps = 111/563 (19%) Query: 33 CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82 ++A D+ + L L D+ V N ++ + + Sbjct: 372 LSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLAR 431 Query: 83 TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136 GI++ ++ T + + N + LAL F +H +GK + F Sbjct: 432 Y-GIEMKGIKY-DTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FN 488 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185 + + + Y D + T L RL + E Sbjct: 489 QIEL----------------EQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEM 532 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I G ID + IA ++L++ ++ + + L+ L Sbjct: 533 PLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEF-NMNSPKQLQAIL 591 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300 F G+ +V + S + + +LA D L +L + KL + L + ++ Sbjct: 592 FEKMGLPVVKKTPSGAPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMIN 650 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ + + TGR S QN+P + Sbjct: 651 PSTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 685 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ Sbjct: 686 EGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGV 745 Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474 ID+VS EQR K + L Y AK + ++ + + + Sbjct: 746 SIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 805 Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + +S + + A+ + GTA +++KKA Sbjct: 806 TRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 865 Query: 515 Q-------GVLQLWKDLTEGFAC 530 Q G ++L + + Sbjct: 866 QWIQEEGNGRVKLLMQVHDELVF 888 >gi|307546592|ref|YP_003899071.1| DNA polymerase I [Halomonas elongata DSM 2581] gi|307218616|emb|CBV43886.1| DNA polymerase I [Halomonas elongata DSM 2581] Length = 922 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 105/583 (18%), Positives = 197/583 (33%), Gaps = 118/583 (20%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S + VG+ +A A+ + D P +L DR +L+ L Sbjct: 349 DLETTSLSYMEADIVGVGLALEPGEAAYIPLAHDYLDAPEQL-DR-------QAVLEALA 400 Query: 63 ----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALN 117 D + N ++ + + T + + + LAL Sbjct: 401 PLWADAGKAKIGQNLKYDISVLARHGHEVAGPL--HDTMLESYVLDSTATRHDMDSLALK 458 Query: 118 FSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + T + GK F + ++ + Y DV+ T L Sbjct: 459 YLGEKTVSFEDIAGKGAKQLTFNQIAL----------------EQAAPYACEDVDITLRL 502 Query: 174 FKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + L P L + ER L + + G +D + + + + + ++L++ Sbjct: 503 HRELRPRVEGQGRLAEVLDNLERPLVRVLSRMERNGVALDPERLHEQSRELGERIRELEQ 562 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +L + L LF I ++ + S + + + +LA D L ++ Sbjct: 563 RAHELAGREF-NLGSPKQLGEILFEEQKIPVIKKTPKGAPST-AEAVLEELALDYPLPKV 620 Query: 283 ASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 KL + L + V GRL + + TGR S QN+P + Sbjct: 621 IMEHRGFSKLRSTYTDKLPKLVDPTTGRLHTSY-HQAVTATGRLSSSDPNLQNIPIRT-- 677 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R +A G +LV AD + IE R++A ++G+ Sbjct: 678 ----------------------EQGRRIRQAFVARPGYRLVAADYSQIELRIMAHLSGDK 715 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452 + AFA G DI+ T A+ F +DKVS EQR K + L Y A + Sbjct: 716 GLLDAFAQGRDIHAATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIER 775 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPE 491 + + + ++ + + + +A++ + + Sbjct: 776 NQAQIYIDRYFDRYPGVARYMERIRAQAAEDGYVETVFGRRLHLPEIHSQNRNRRQGAER 835 Query: 492 FAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 A+ + GTA +++K+A V+Q+ +L Sbjct: 836 TAINAPMQGTAADIIKRAMIDVDGWLADGDIDAMMVMQVHDEL 878 Score = 40.5 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNAT--KNGYDI----VLTVHDEIVSETPDTPYFS-VGTLCSLM 651 Q + DI+ M + DI V+ VHDE+V E ++ + + + + M Sbjct: 843 QGTAADIIKRAMIDVDGWLADGDIDAMMVMQVHDELVFEVAESEVDAFMDQVKTRM 898 >gi|163744924|ref|ZP_02152284.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] gi|161381742|gb|EDQ06151.1| DNA polymerase I [Oceanibulbus indolifex HEL-45] Length = 932 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 106/548 (19%), Positives = 193/548 (35%), Gaps = 85/548 (15%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D MP + L L D ++ + N ++ +F + LGI + A Sbjct: 395 DLAPG-QMPFEEALQLLTPMLEDPAILKIGQNMKYDGKIFAQ-LGITVAPIDDTMLMSYA 452 Query: 101 RTNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSI-DSPPYDCTRAN-HVQ 154 GL + + GK+ + F K + D+ PY A+ ++ Sbjct: 453 MHAGLHGHGMDTLSERYLGHTPLPIKPLLGSGKSAVT-FDKVPMEDAVPYAAEDADVTLR 511 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 W+LF R E T ++++ L ER L + + G +D D + ++ A Sbjct: 512 LWKLFKPQLHR-AEVT-KVYETL------ERPLVPVLAQMERAGILVDRDTLSRMSNAFA 563 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNI 270 Q+ L+ DI +L + L LF G+D + T +L Sbjct: 564 QKMAGLEADIHELAGETF-NVGSPAQLGEILFGKMGLDGGKKGKTGKYSTGADVLEDLAT 622 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +L+ S + L + V++ GR+ GA+ TGR + QN Sbjct: 623 EHDLARRVLDWRQLSKLKSTYTDALQDHVNANTGRVHTCYSIAGAA-TGRLASTDPNLQN 681 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A GK LV D + IE R+L Sbjct: 682 IPIRS------------------------EEGRRIREAFVAPEGKVLVALDYSQIELRIL 717 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A IA D +AF G+DI+ T ++ F+ P+D+++ E R K + + Y G A Sbjct: 718 AHIAQIDALKEAFERGDDIHAMTASEMFDVPMDQMTPEIRRNAKAINFGVIYGISGFGLA 777 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ----------------- 488 + + + + ++ + T+ D +A + Sbjct: 778 RNLRIPRAEAQGFIDRYFERFPGIRTYMDDTKAFAKEHGFVQTLFGRKINTPNIGAKGPQ 837 Query: 489 ---YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++++A + + LQ+ +L ++ Sbjct: 838 AGFAARAAINAPIQGTAADVIRRAMIRMPEAIADLPAKMLLQVHDELLFEVEKGAEDALI 897 Query: 538 ISARRVAN 545 +AR V Sbjct: 898 AAAREVME 905 >gi|213852345|ref|ZP_03381877.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 772 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 112/612 (18%), Positives = 206/612 (33%), Gaps = 119/612 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 199 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 248 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 249 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 306 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 307 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 350 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 351 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 410 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 411 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 468 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 469 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 524 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 525 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 563 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 564 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 623 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 624 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 683 Query: 491 -EFAVKDKLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARR 542 A+ + GTA +++K+ AW Q +++ + + V ++ A+R Sbjct: 684 ERAAINAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKR 743 Query: 543 VANVPRLVMRRH 554 + + R Sbjct: 744 IHQLMENCTRID 755 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M A + +++ VHDE+V E +V + LM Sbjct: 693 QGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLM 748 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] gi|151280566|gb|ABR88976.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 117/613 (19%), Positives = 209/613 (34%), Gaps = 125/613 (20%) Query: 5 FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 ID ET S P+ + GV AY A+ + D P +L + + Sbjct: 338 SIDTETTSLIPMQAQLVGISLCCEPGVAAY------IPVAHHYQDVPQQL----SRELVL 387 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L D + V N ++ +F G+++ T + + S L Sbjct: 388 EKMKPWLEDASKAKVGQNLKYDSHIFANH-GVNLRGI-VHDTLLESYVFESHRSHDMDSL 445 Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 AL + +E GK F + I EY D + T Sbjct: 446 ALRHLNRKTITFQEVCGKGASQIGFEQVEIG----------------RATEYAAEDADIT 489 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L +R+ P E ++ Q I G ID DL+ K + + + Sbjct: 490 LQLHQRMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLIDPDLLAKQSNELGKRMLE 549 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 ++++ +L + + + F + +V + S + +LA+D L Sbjct: 550 IEQNAYELAEQPF-NLNSPKQIGEIFFEKLKLPVVKKTPSGSPST-DEEVLQKLAEDYPL 607 Query: 280 NRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L + + GR+ + TGR + QN+P + Sbjct: 608 PKVLLEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYA-QAVAVTGRLASNDPNLQNIPIR 666 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G +V AD + IE R++A I+ Sbjct: 667 ------------------------NAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHIS 702 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 G++ ++AFA+GEDI+ T A+ F V EQR KV+ L Y A Sbjct: 703 GDENMLQAFADGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMSAFGLAGNLG 762 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQ 488 S ++++ + D + E+ LW+ + Sbjct: 763 IERSAAQSYIERYFHRFAGVKRYMDETRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQG 822 Query: 489 YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV----VQE 534 A+ + GTA +L+K A A + + ++Q+ +L V+E Sbjct: 823 AERAAINAPMQGTAADLIKLAMIAVQGWLETEKLQSKMIMQVHDELVLEVPETELPLVRE 882 Query: 535 GGSISARRVANVP 547 R VA + Sbjct: 883 KLPELMRHVAQLK 895 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + D++ M K +++ VHDE+V E P+T V L LM Sbjct: 833 QGTAADLIKLAMIAVQGWLETEKLQSKMIMQVHDELVLEVPETELPLVREKLPELM 888 >gi|83648986|ref|YP_437421.1| DNA polymerase I [Hahella chejuensis KCTC 2396] gi|83637029|gb|ABC32996.1| DNA polymerase I [Hahella chejuensis KCTC 2396] Length = 911 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 108/602 (17%), Positives = 202/602 (33%), Gaps = 115/602 (19%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 D ET S + V +A A+ + P +L E+ + + L Sbjct: 332 KTFSFDTETTSLNYMEAEIVGVSFAVEPGKAAYVPVAHDYMGAPEQL----ERDKVLAAL 387 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLA- 115 L D + N ++ + G+ + T + + + LA Sbjct: 388 KPLLEDPAYRKIGQNLKYDAHVLANH-GVQLNGIA-EDTMLESYVLNSTANRHDMDTLAS 445 Query: 116 --LNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + GK F + S+ + G Y D + T + Sbjct: 446 KHLGRETIHFEDIAGKGAKQLTFNQISL----------------EQAGPYAAEDADITLQ 489 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L P D E L + + RG +D + + +A+ +L+ Sbjct: 490 LHHALNPKLKKEGRLEQVYRDIELPLVPVLMRMEHRGALVDSQRLRTHSQELAERMLELE 549 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 E+ + + L+ + G D++ + S + + +LA+ L R Sbjct: 550 EEAYEKAGQKF-NLGSPKQLQEIFYEKLGFDIIKKTPKGQPST-AEPVLQELAEKYELPR 607 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L E ++ GR+ + Q + TGR S QN+P Sbjct: 608 VLLEYRGLSKLKSTYTDKLPEMINPRTGRVHTSYQ-QAVAATGRLSSSDPNLQNIP---- 662 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G KL+ AD + IE R++A ++G+ Sbjct: 663 --------------------VRNEQGRRIRQAFIAPKGCKLISADYSQIELRIMAHLSGD 702 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + +KAF+ G D++ T A+ FN D+VS EQR K + L Y A+ Sbjct: 703 EGLLKAFSEGLDVHQATAAEVFNVAFDEVSSEQRRKAKAINFGLIYGMSAFGLARQIHVE 762 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 S + ++ + + + +AE+ + +Q Sbjct: 763 RSEAQSYIDKYFERYPGVLNYMNRIRAEAQDTGYVETLFGRRLYLPDIRSSNRNLQQAAE 822 Query: 491 EFAVKDKLIGTACELVKKAWRAKH-----------QGVLQLWK----DLTEGFACVVQEG 535 A+ + GTA +++K+A A + ++Q+ ++ E V+E Sbjct: 823 RTAINAPMQGTAADIIKRAMLAVDAWLEGDSAPPAKMIMQVHDELILEVEESAVEAVKEK 882 Query: 536 GS 537 + Sbjct: 883 LT 884 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619 RRL D++ L A R +Q + DI+ M Sbjct: 802 GRRLYLPDIRSSNRNLQQAA---ERTAINAP------MQGTAADIIKRAMLAVDAWLEGD 852 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652 +++ VHDE++ E ++ +V L +M+ Sbjct: 853 SAPPAKMIMQVHDELILEVEESAVEAVKEKLTQIMS 888 >gi|320539310|ref|ZP_08038980.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] gi|320030702|gb|EFW12711.1| fused DNA polymerase I 5'->3' polymerase/3'->5' exonuclease/5'->3' exonuclease [Serratia symbiotica str. Tucson] Length = 933 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 102/574 (17%), Positives = 203/574 (35%), Gaps = 94/574 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L +++++ L L DE V+ V N F+ + + GI+ Sbjct: 384 AAYLPVAHDYLDAPAQL----DRASVLERLKLLLEDEKVLKVGQNLKFDMGVLARY-GIN 438 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + LA + H T E GK F + ++ Sbjct: 439 LRGIAY-DTMLESYVLDSVGGRHDMDNLADRYLGHKTITFEEIAGKGKNQLTFNQIALAQ 497 Query: 143 PP------YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 D T H+ W + + L ++ + L + I Sbjct: 498 AALYAAEDADVTLRLHLAMWPQLKQSA-----------ELLRVFNEIDMPLVPVLSHIER 546 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G ID ++ + + + +L+ +L L+ L+ + ++ Sbjct: 547 TGVLIDPAILSVHSQELTKRLGELEIQAHELAGEPFNLV-SLKQLQAILYEKQKLPVLKK 605 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQ 310 + G S + + +LA D L ++ + KL + L ++ GR+ + Sbjct: 606 TPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTSY- 663 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P + + +R IA Sbjct: 664 HQAVTATGRLSSSDPNLQNIPVRNDED------------------------RRIRQAFIA 699 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G ++V AD + IE R++A ++ + +KAFA G+DI+ T A+ F P+DKV+ EQR Sbjct: 700 PEGYRIVAADYSQIELRIMAHLSQDAGLLKAFAEGKDIHRATAAEVFGVPLDKVASEQRR 759 Query: 431 IGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----------- 475 K + L Y A+ + ++ + + + Sbjct: 760 SAKAINFGLIYGMSAFGLARQLGVPRGEAQRYMDRYFERYPGVLDYMERTRQQAAEQGYV 819 Query: 476 ----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQGVL 518 A S + + A+ + GTA +++K+A + + Q ++ Sbjct: 820 TTLDGRRLYLPDARSSNGMRRKAAERAAINAPMQGTAADIIKRAMIEVDAWIQEQGQPLV 879 Query: 519 QLWKDLTEGFACVVQEGGS-ISARRVANVPRLVM 551 ++ + + V E S++R+ + M Sbjct: 880 RMIMQVHDELVFEVHESVIDASSQRIRELMEGSM 913 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 17/95 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----N 620 RRL D + R +Q + DI+ M Sbjct: 824 GRRLYLPDARSSN---GMRRKAAERAAINAP------MQGTAADIIKRAMIEVDAWIQEQ 874 Query: 621 GYDIV---LTVHDEIVSETPDTP-YFSVGTLCSLM 651 G +V + VHDE+V E ++ S + LM Sbjct: 875 GQPLVRMIMQVHDELVFEVHESVIDASSQRIRELM 909 >gi|330831571|ref|YP_004394523.1| DNA polymerase I [Aeromonas veronii B565] gi|328806707|gb|AEB51906.1| DNA polymerase I [Aeromonas veronii B565] Length = 921 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 105/583 (18%), Positives = 189/583 (32%), Gaps = 101/583 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V A +A + + PV+L ++ + L L Sbjct: 347 DTETTSLDYMEARIVGVSFAVEAGKAAYVPFGHDYLGAPVQL----SEAVVLGKLKPLLE 402 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNFSE 120 D T + V N ++R + L DI + T + + +S LA + Sbjct: 403 DPTCLKVGQNLKYDRNVL---LNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLG 459 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-- 178 T E I N ++ + Y D + T L + L Sbjct: 460 VETTSFE-----------DIAGKGVKQLTFNQIEL-EQAAPYAAEDADITLRLHQTLWGQ 507 Query: 179 ---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 S+ E L + + G ID L+ + + I +L++ +L Sbjct: 508 LEAVPGLAKVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELEKQAHELAG 567 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 S L LF G+ ++ + S + +LA+ L +L + Sbjct: 568 QEFNLS-SPKQLGEILFTKLGLPIIKKTPKGAPSTAEE-VLAELAETYELPQLLMEHRGL 625 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + GR+ + + TGR S QN+P Sbjct: 626 AKLKSTYTDKLPLMIKPQTGRVHTSY-HQAVAATGRLSSSDPNLQNIP------------ 672 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I S G KLV AD + IE R++A ++G+ + AFA Sbjct: 673 ------------VRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFA 720 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+DI+ T A+ F ID V+ + R K + L Y AK + + Sbjct: 721 EGKDIHKATAAEVFGVAIDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYM 780 Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498 + + + + +S + ++ A+ + Sbjct: 781 DLYFERYPGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKAAERAAINAPM 840 Query: 499 IGTACELVKKAWRAKHQGVL-------QLWKDLTEGFACVVQE 534 GTA +++K+A + ++ + + ++E Sbjct: 841 QGTAADIIKRAMINVDSWIRGIEDESIRMLMQVHDELVFEIRE 883 >gi|261866908|ref|YP_003254830.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412240|gb|ACX81611.1| DNA polymerase I (POL I) [Aggregatibacter actinomycetemcomitans D11S-1] Length = 933 Score = 295 bits (754), Expect = 2e-77, Method: Composition-based stats. Identities = 103/561 (18%), Positives = 191/561 (34%), Gaps = 100/561 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + + + N F+ +F + GID+ + T +L+ T LA Sbjct: 412 LKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEF-DTMLLSYTLDSTGRHNMDDLAK 469 Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H T + GK F + + + GEY D + T + Sbjct: 470 RYLGHQTISFEDIAGKGKNQLTFNQIPL----------------EQAGEYAAEDADVTMK 513 Query: 173 L----FKRLIPLSD-------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L +++L P E L + + G ID D + I + L+ Sbjct: 514 LQQVLWQKLQPQPGLVELYQSIELPLLGVLSRMERYGVLIDSDALFLQSNEITERLTALE 573 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 L + T L+ LF G+ ++ + + S + + +LA L + Sbjct: 574 MQAHTLAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGVPST-NEEVLEELAYSHELPK 631 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L + V+ GR+ + + TGR S QN+P + Sbjct: 632 VLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-- 688 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A +R IA +G K++ AD + IE R++A ++ + Sbjct: 689 ----------------------NEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 726 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 I AFA G+DI+ +T A+ F P+++V+ EQR K + L Y ++ Sbjct: 727 QGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGIS 786 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 + + + Q + TF + S + + Sbjct: 787 RADAQRYMDLYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAE 846 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A+ + GTA + +K+A G+ + D + + V V Sbjct: 847 RVAINAPMQGTAADTIKRAMIKLD-GITRDDPD--------IHMIMQVHDELVFEVRSEK 897 Query: 551 MRRHKRDVHIVLPSSRRLVYS 571 + + + ++ LV Sbjct: 898 IAFFSDLIKQHMEAAAELVVP 918 >gi|54296094|ref|YP_122463.1| DNA polymerase I [Legionella pneumophila str. Paris] gi|53749879|emb|CAH11261.1| DNA polymerase I [Legionella pneumophila str. Paris] Length = 896 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 112/593 (18%), Positives = 209/593 (35%), Gaps = 110/593 (18%) Query: 6 IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 ID ET + L + + + A A+ D +L + + + L L Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEDNASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120 + + + N ++ + K GI + R+ T + + LAL + Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLALKYLG 436 Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + T + GK RF + ++ G Y D + T L + Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVEKA----------------GIYAAEDADITLRLHHK 480 Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L P+ D E L + + G ID ++ K + ++ K L+++ V+L Sbjct: 481 LYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQL 540 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L+ LF + +V + T + + S + +LA D L + Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ KL + L + ++ T + TGR S QN+P + Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA G ++ AD + IE R++A ++ +D ++AF Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 ANG DI+ T ++ F T ++ VSKEQR K + L Y AK Sbjct: 695 ANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 + + + + + + ++H +L Q A+ Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814 Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLT-EGFACVVQEGGSI 538 + GTA +++KK A + ++Q+ +L E V+E +I Sbjct: 815 MQGTAADIIKKTMLAISSWEHSQKSPSAKMIMQVHDELVFEVRKEAVEECHAI 867 >gi|148358256|ref|YP_001249463.1| DNA polymerase I [Legionella pneumophila str. Corby] gi|148280029|gb|ABQ54117.1| DNA polymerase I [Legionella pneumophila str. Corby] Length = 896 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 113/593 (19%), Positives = 209/593 (35%), Gaps = 110/593 (18%) Query: 6 IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 ID ET + L + + E A A+ D +L + + + L L Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEENASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120 + + + N ++ + K GI + R+ T + + LAL + Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLKGIRY-DTMLESYVLNSGAGRHDMDSLALKYLG 436 Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + T + GK RF + ++ G Y D + T L + Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVEKA----------------GIYAAEDADITLRLHHK 480 Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L P+ D E L + + G ID ++ K + ++ K L+++ V+L Sbjct: 481 LYPMLDEPLRNVLHDIEMPLLTVLADMEIHGVLIDPVILEKHGSRLKEQMKSLEQEAVQL 540 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L+ LF + +V + T + + S + +LA D L + Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ KL + L + ++ T + TGR S QN+P + Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA G ++ AD + IE R++A ++ +D ++AF Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 ANG DI+ T ++ F T ++ VSKEQR K + L Y AK Sbjct: 695 ANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 + + + + + + ++H +L Q A+ Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814 Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLT-EGFACVVQEGGSI 538 + GTA +++KK A + ++Q+ +L E V+E +I Sbjct: 815 MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAI 867 >gi|149189881|ref|ZP_01868161.1| DNA polymerase I [Vibrio shilonii AK1] gi|148836367|gb|EDL53324.1| DNA polymerase I [Vibrio shilonii AK1] Length = 932 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 107/567 (18%), Positives = 195/567 (34%), Gaps = 113/567 (19%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 GV AY A+ + P +L ++ + L L D+ + V N ++ + Sbjct: 381 GVAAY------VPVAHDYIGAPEQL----DRQWVLEQLKPLLEDDAIAKVGQNLKYDASV 430 Query: 80 FKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSEH-----LTKMEEGKALI 132 + DI K ++LA N + LAL F +H +GKA + Sbjct: 431 LARY---DIELKGIKFDTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKAQL 487 Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LS 181 F + + + Y D + T L +RL Sbjct: 488 T-FNQIDL----------------EQASPYAAEDADVTFRLHQRLNAELEKNEALNRIYQ 530 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + I G ID L+ + IA +L++ ++ S L Sbjct: 531 DIEVPLVPVLSRIERTGVLIDDMLLGAQSQEIAARLDELEQKAFEIAGQEFNLS-SPKQL 589 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 + F G+ ++ + S + + +LA D L +L + KL + L Sbjct: 590 QTIFFEKMGLPVIKKTPSGAPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLP 648 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + ++ GR+ + + TGR S QN+P + Sbjct: 649 KMINPETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR---------------------- 685 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R IA +G K++ D + IE R++A ++G+ + AF NG+DI+ T A+ Sbjct: 686 --NEEGRRIRQAFIAPHGWKILAVDYSQIELRIMAHLSGDKALLDAFKNGKDIHAATAAE 743 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471 ID+V+ EQR K + L Y A K + + + Sbjct: 744 IIGVDIDQVTSEQRRRAKAINFGLIYGMSAFGLSKQLGIPRGEAQQYMDTYFERYPGVMQ 803 Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + +S + + A+ + GTA +++KKA Sbjct: 804 YMEDTRSLAAEKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAM 863 Query: 511 -------RAKHQGVLQLWKDLTEGFAC 530 +A+ +G ++L + + Sbjct: 864 LLVDEWVQAEGEGKVKLLMQVHDELVF 890 >gi|92112681|ref|YP_572609.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] gi|91795771|gb|ABE57910.1| DNA polymerase I [Chromohalobacter salexigens DSM 3043] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 110/589 (18%), Positives = 200/589 (33%), Gaps = 114/589 (19%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S + +G+ A +A A+ + D P +L DR +L L+ Sbjct: 355 DLETTSLNYMEADIVGIGLSLDAGEAAYIPVAHRYLDAPEQL-DRAS-------VLAALK 406 Query: 63 ----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLAL 116 D + N ++ + + DI + ++LA N + LAL Sbjct: 407 PLWEDPAKAKIGQNLKYDISVLARY---DIEVAGRLEDTMLASYVLNATATRHDMDSLAL 463 Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + T E GK F + ++ + Y DV+ T Sbjct: 464 KYLGEKTISFEEIAGKGAKQLTFDQIAL----------------EQAAPYACEDVDITLR 507 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L P L D E L + + G +D + + + + ++L+ Sbjct: 508 LHRELRPRVDGEGRLAAVLDDIELPLVPVLSRMERNGVALDAERLHAQSRELEKRLRELE 567 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +L + L LF I ++ + S + + + +LA D L + Sbjct: 568 TRAYELAGREF-NLGSPKQLGEILFDELKIPVIKKTPKGAPST-AEAVLEELALDYPLPK 625 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L + V++ R T + TGR S QN+P + Sbjct: 626 VIIEHRGFAKLKSTYTDKLPQLVNATTRRLHTSYHQAVTATGRLSSSDPNLQNIPIRT-- 683 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R +A G ++V AD + IE R++A ++G+ Sbjct: 684 ----------------------EEGRKIRQAFVARPGYRIVAADYSQIELRIMAHLSGDK 721 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452 + AFA G DI+ T A+ F +D VS EQR K + L Y A + Sbjct: 722 GLLDAFAEGRDIHTATAAEVFGVALDAVSGEQRRSAKAINFGLIYGMSAWGLGRQLHIER 781 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPE 491 + + ++ + F + +A+ + + + Sbjct: 782 NQAQTYIDRYFDRYPGVARFMERIRAQAADDGYVETVFGRRLYLPEINAQNRTRRQAAER 841 Query: 492 FAVKDKLIGTACELVKKAW----RAKHQGVLQLW--KDLTEGFACVVQE 534 A+ + GTA +++K A R +G W + + V+E Sbjct: 842 TAINAPMQGTAADIIKLAMIDVDRWLREGDFDAWMVMQVHDELVFEVKE 890 >gi|254228533|ref|ZP_04921958.1| DNA polymerase I [Vibrio sp. Ex25] gi|262392691|ref|YP_003284545.1| DNA polymerase I [Vibrio sp. Ex25] gi|151938915|gb|EDN57748.1| DNA polymerase I [Vibrio sp. Ex25] gi|262336285|gb|ACY50080.1| DNA polymerase I [Vibrio sp. Ex25] Length = 928 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 100/559 (17%), Positives = 186/559 (33%), Gaps = 107/559 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + L L D V N ++ + + D Sbjct: 379 AAYVPVAHDYLDAPEQL----DRDWVLEQLKPILEDAAKAKVGQNLKYDASVLARY---D 431 Query: 88 IPSKRW-ICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSI 140 I K T + + N + LAL F +H +GK + F + + Sbjct: 432 IELKGIKHDTMLESYIYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIEL 490 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189 + Y D + T L RL + E L Sbjct: 491 ----------------EQASPYAAEDADVTLRLHNRLFANIEQDESLKTVYEEIEMPLVP 534 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + I G ID + I +L++ ++ + + L+ LF Sbjct: 535 VLSRIERTGVFIDEMKLSAQSVEITARLDELEKKAYEIAEQEF-NMNSPKQLQAILFEKM 593 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-G 303 G+ +V + S + + +LA D L +L + KL + L + ++ G Sbjct: 594 GLPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPTTG 652 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P + A Sbjct: 653 RVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEAGRR 687 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I++ Sbjct: 688 IRQAFVAPSGHKILAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGLDIEQ 747 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474 VS EQR K + L Y AK + ++ + + + Sbjct: 748 VSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRST 807 Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ--- 515 + +S + + A+ + GTA +++KKA Q Sbjct: 808 AADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQ 867 Query: 516 ----GVLQLWKDLTEGFAC 530 G ++L + + Sbjct: 868 EEGNGRVKLLMQVHDELVF 886 >gi|251793585|ref|YP_003008314.1| DNA polymerase I [Aggregatibacter aphrophilus NJ8700] gi|247534981|gb|ACS98227.1| DNA polymerase I (POL I) [Aggregatibacter aphrophilus NJ8700] Length = 985 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 100/561 (17%), Positives = 187/561 (33%), Gaps = 100/561 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + + V N F+ +F + GI++ + T +L+ T LA Sbjct: 464 LKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEF-DTMLLSYTLDSTGRHNMDDLAK 521 Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H T + GK F + + + GEY D + T + Sbjct: 522 RYLGHQTIGFEDIAGKGKNQLTFNQIPL----------------EQAGEYAAEDADVTMK 565 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L E L + + G ID D + I + L+ Sbjct: 566 LQQVLWEKLKSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTALE 625 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +L + T L+ LF G+ ++ + S + + +LA L + Sbjct: 626 MQAHELAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELAYSHELPK 683 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L + V+ GR+ + + TGR S QN+P + Sbjct: 684 VLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-- 740 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA +G K++ AD + IE R++A ++ + Sbjct: 741 ----------------------NEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 778 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 I AFA G+DI+ +T A+ F P+++V+ EQR K + L Y ++ Sbjct: 779 AGLINAFAQGKDIHRSTAAELFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGIS 838 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 + + + Q TF + S + + Sbjct: 839 RADAQRYMDLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAE 898 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A+ + GTA +++K+A + + + D + + V V Sbjct: 899 RVAINAPMQGTAADIIKRAMIKLDE-ITRDDPD--------IHMIMQVHDELVFEVRSEK 949 Query: 551 MRRHKRDVHIVLPSSRRLVYS 571 + + + ++ LV Sbjct: 950 IAFFSDLIKQHMEAAAELVVP 970 >gi|227113276|ref|ZP_03826932.1| DNA polymerase I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 929 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 105/577 (18%), Positives = 195/577 (33%), Gaps = 106/577 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L DRT+ A+ L DE ++ + N F++ + ++ D Sbjct: 381 AAYLPLAHDYLDAPEQL-DRTKVLAL---FKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433 Query: 88 IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I + ++L + LA + H T E GK F + ++ Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLTFNQIAL- 492 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLL 190 + G Y D + T L ++L + L + Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQKLWGKLQPHADLCQVFQTIDMPLVPV 537 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID ++ + + + +L+ +L S T L+ L+ Sbjct: 538 LSRIERTGVLIDPAILAEHSKELTIRLAELETQAYELAGEEFNLS-STKQLQGILYEKQK 596 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305 + ++ + S + + +LA D L +L + KL + L ++ + Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +R Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +V AD + IE R++A ++G+ + AFANG DI+ T ++ F +DKV+ Sbjct: 692 QAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDKVT 751 Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471 EQR K + L Y A + + + +Q + + + + Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811 Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------- 512 + S + + A+ + GTA +++KKA A Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD 871 Query: 513 --KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 K + ++Q+ +L V E + + Sbjct: 872 TPKVKMIMQVHDELVFEIHDSVIEESISKIKALMEGC 908 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 16/94 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619 RRL D+ + A R +Q + DI+ + M Sbjct: 821 GRRLYLPDIHSRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLQKD 871 Query: 620 -NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 +++ VHDE+V E D+ S+ + +LM Sbjct: 872 TPKVKMIMQVHDELVFEIHDSVIEESISKIKALM 905 >gi|238755604|ref|ZP_04616941.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] gi|238706204|gb|EEP98584.1| DNA polymerase I [Yersinia ruckeri ATCC 29473] Length = 934 Score = 294 bits (752), Expect = 3e-77, Method: Composition-based stats. Identities = 96/572 (16%), Positives = 193/572 (33%), Gaps = 107/572 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++S + + L L DE + V N F++ L + GI+ Sbjct: 385 AAYLPVAHDYLDAPAQL----DRSWVLTTLKPLLEDEQALKVGQNLKFDKSLLARY-GIE 439 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + L+ + H T E GK F + ++ Sbjct: 440 LRGIAF-DTMLESYVLNSVAGRHDMDSLSERYLNHKTITFEEIAGKGKNQLTFNQIAL-- 496 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + Y D + T +L + P E L + Sbjct: 497 --------------EQASPYAAEDADVTLQLHLAMWPKLQESEDLLRVFQQIEMPLLPIL 542 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G ID ++ + + +L++ +L + + L+ L+ + Sbjct: 543 SRIERTGVLIDQSILATHSQELTIRLTELEKQAHELAEEPFNLA-SPKQLQAILYEKQKL 601 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + G S + + +LA D L ++ + KL + L ++ GR+ Sbjct: 602 PILKKTPGGAAST-NEEVLAELALDYPLPKVLLEYRGLAKLKSTYTDKLPLMINPISGRV 660 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 661 HTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRIR 695 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V+ Sbjct: 696 QAFIAPAGYCILAADYSQIELRIMAHLSQDKGLLAAFAEGKDIHRATAAEVFGLPLENVT 755 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 EQR K + L Y A+ + + + + + + ++ Sbjct: 756 TEQRRSAKAINFGLIYGMSAFGLARQLNIPRGEAQRYMDLYFERYPGVLEYMERTRKQAA 815 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GTA +++K+A A Sbjct: 816 DQGYVTTLDGRRLYLPDIHSRNANRRKAAEREAINAPMQGTAADIIKRAMIAVDAWLQQQ 875 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISAR 541 + ++Q+ +L V E + + Sbjct: 876 AEPLVRVIMQVHDELVFEVHESVVESATQTIC 907 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 17/97 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619 RRL D+ + RE +Q + DI+ M Sbjct: 825 GRRLYLPDIHSRNA---NRRKAAEREAINAP------MQGTAADIIKRAMIAVDAWLQQQ 875 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTK 653 +++ VHDE+V E ++ S T+C LM + Sbjct: 876 AEPLVRVIMQVHDELVFEVHESVVESATQTICDLMEQ 912 >gi|296105609|ref|YP_003617309.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] gi|295647510|gb|ADG23357.1| DNA polymerase I [Legionella pneumophila 2300/99 Alcoy] Length = 896 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 112/593 (18%), Positives = 209/593 (35%), Gaps = 110/593 (18%) Query: 6 IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 ID ET + L + + + A A+ D +L + + + L L Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEDNASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120 + + + N ++ + K GI + R+ T + + LAL + Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLQGIRY-DTMLESYVLNSGAGRHDMDSLALKYLG 436 Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + T + GK RF + ++ G Y D + T L + Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVEKA----------------GIYAAEDADITLRLHHK 480 Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L P+ D E L + + G ID ++ K + ++ K L+++ V+L Sbjct: 481 LYPMLDKPLRNVLHDIEMPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQL 540 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L+ LF + +V + T + + S + +LA D L + Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ KL + L + ++ T + TGR S QN+P + Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA G ++ AD + IE R++A ++ +D ++AF Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 ANG DI+ T ++ F T ++ VSKEQR K + L Y AK Sbjct: 695 ANGWDIHAATASEIFQTNLEAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 + + + + + + ++H +L Q A+ Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814 Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLT-EGFACVVQEGGSI 538 + GTA +++KK A + ++Q+ +L E V+E +I Sbjct: 815 MQGTAADIIKKTMLAVSSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECHAI 867 >gi|119946792|ref|YP_944472.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] gi|119865396|gb|ABM04873.1| fused DNA polymerase 5'->3' exonuclease and 3'->5' polymerase and 3'->5' exonuclease [Psychromonas ingrahamii 37] Length = 938 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 108/560 (19%), Positives = 188/560 (33%), Gaps = 102/560 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L D T L L E V N ++R + GI+ Sbjct: 390 AAYLPLAHDYIDAPKQL-DLT---TTLEKLRPLLESEKYKKVGQNLKYDRSVLLNH-GIE 444 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSP 143 + ++ T + + LAL + H E GK F + SI Sbjct: 445 LKGIKF-DTMLESYVLDSTGRHDMDTLALKYLGHQCISFEEIAGKGKKQLPFNQISIIEA 503 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQ 192 Y D + T L +L ++ E L + Sbjct: 504 A----------------PYAAEDADVTLRLHLQLFEQLSAEPKLLSVFNNIELPLLTVLS 547 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I G ID DL+ K I + +L+ + S L+ L+ + Sbjct: 548 DIERGGVEIDSDLLTKQSAEIGKRLLELEALAYEEAGKPFNLS-SPKQLQTILYDELELP 606 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLR 306 ++ + S + +LA L +L + KL + L + V+ GRL Sbjct: 607 VLKKTPKGAPSTAEE-VLQELALTYPLPKLIIEHRGLSKLKSTYTDKLPKMVNEKTGRLH 665 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 + Q + TGR S QN+P + +R Sbjct: 666 TSYQ-QAVTVTGRLSSTDPNLQNIPIRS------------------------AEGRRIRQ 700 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 IA G K+V AD + IE R++A ++ + + AF+ G+DI+ T ++ F+ P+D+V+ Sbjct: 701 AFIAQPGYKIVAADYSQIELRIMAHLSQDKGLLDAFSTGKDIHKATASEVFSVPLDEVTT 760 Query: 427 EQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-------- 474 EQR K + L Y AK L + ++ + + Sbjct: 761 EQRRSAKAINFGLIYGMSAFGLAKQLNIGRHEAQLYMDKYFNRYPGVLIYMEDTRSLANE 820 Query: 475 -------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR-------AKH 514 +S + ++ A+ + GTA +++KKA K Sbjct: 821 KAYVETILGRRLQLPNIKSRNGMLKKAAERAAINAPMQGTAADIIKKAMIDMADWIAQKS 880 Query: 515 QGVLQLWKDLTEGFACVVQE 534 G +Q+ + + ++E Sbjct: 881 PGSVQMLMQVHDELVFSIKE 900 >gi|312882610|ref|ZP_07742349.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] gi|309369695|gb|EFP97208.1| DNA polymerase I [Vibrio caribbenthicus ATCC BAA-2122] Length = 927 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 111/595 (18%), Positives = 198/595 (33%), Gaps = 119/595 (20%) Query: 4 LFIDIET----RSPQPLPKV------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM 53 + D ET L V GV AY A+ + D P +L E+ + Sbjct: 350 IAFDTETDSLDYMEANLVGVSFAIEEGVAAY------VPVAHDYMDAPKQL----ERDWV 399 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNA 112 L L D + V N ++ + + GID+ ++ T + + N + Sbjct: 400 LEQLKPILEDGSRAKVGQNLKYDASVLARY-GIDMRGIKF-DTMLASYVYNSVAGKHDMD 457 Query: 113 CLALNFSEHLTKMEEGKALIAR----FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL F +H E A + F + + + Y D + Sbjct: 458 SLALRFLQHSCISFEQVAGKGKKQLTFNQIDL----------------EQAAPYAAEDAD 501 Query: 169 ATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L +RL D E L + I G ID + + IA Sbjct: 502 VTFRLHQRLQKSLDASDKLASIYRDIEMPLVPVLSRIERTGVLIDDMKLSAQSQEIALRL 561 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 L++ + + L+ LF G+ +V + S + + +LA D Sbjct: 562 DALEQQAFDIAGQEF-NMNSPKQLQAILFEKMGLPVVKKTPSGTPST-NEEVLQELALDY 619 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 620 PLPEKILEYRGLAKLKSTYTDKLPKMINPTTGRVHTSY-HQAVTATGRLSSTDPNLQNIP 678 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R +A +G K++ D + IE R++A Sbjct: 679 IR------------------------NEEGRRIRQAFVAPHGYKIMAIDYSQIELRIMAH 714 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 ++G+ ++AF G+DI+ T A+ I +V+ EQR K + L Y AK Sbjct: 715 LSGDRALLEAFQQGKDIHAATAAEILGVDISQVTAEQRRRAKAVNFGLIYGMSAFGLAKQ 774 Query: 448 FKTMASHCGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY----------------- 489 + + + ED + +++ + Sbjct: 775 LGIPRGEAQQYMDTYFERYPGVMQYMEDTRSIAAEQGYVETIFGRRLHLPEIQSRNGMRR 834 Query: 490 ---PEFAVKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++KKA + + QG ++L + + V+E Sbjct: 835 KAAERAAINAPMQGTAADIIKKAMLLVDDWIQTEGQGRVKLLMQVHDELVFEVEE 889 >gi|308188689|ref|YP_003932820.1| DNA polymerase I [Pantoea vagans C9-1] gi|308059199|gb|ADO11371.1| DNA polymerase I [Pantoea vagans C9-1] Length = 928 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 113/573 (19%), Positives = 200/573 (34%), Gaps = 101/573 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L +++A+ + L L D++ V N ++R + K D Sbjct: 379 AAYLPVAHDYLDAPEQL----DRAAVLAQLKPLLEDDSAWKVGQNLKYDRGVLKNY---D 431 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I ++L N + LA + H T + IA K + Sbjct: 432 IELAGIKFDTMLESYILNSVVGKHDMDSLAARWLNHKTVTFQ---EIAGKGKNQLTFNQI 488 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTI 194 +A+H Y D + T +L ++ P + E L + I Sbjct: 489 ALEQASH---------YAAEDADVTLQLHLKMWPELEKEAGPRKVFEQIEMPLLTVISRI 539 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G ID ++ + + + +L+ +L S T L++ LF GI Sbjct: 540 ERNGVLIDQAILAQHSKELTARLAELELKAHELAGEPFNLS-STKQLQVILFEKQGIKPT 598 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGT 308 + G S S + +LA D L ++ + KL + L ++ GR+ + Sbjct: 599 KKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPLSGRVHTS 657 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + TGR S QN+P +R Sbjct: 658 Y-HQAVTATGRLSSADPNLQNIP------------------------VRNDEGRRIRQAF 692 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A+ G ++V AD + IE R++A ++ + + AFA GEDI+ T ++ F P+DKVS EQ Sbjct: 693 VAAKGYRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVPLDKVSAEQ 752 Query: 429 RAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------- 475 R K + L Y A + A + + + + + Sbjct: 753 RRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLAASKG 812 Query: 476 --EQAESHHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRAKH--------- 514 E E LW+ + A+ + GTA +++K+A A Sbjct: 813 YVETIEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDAWLEQQNDN 872 Query: 515 --QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L E S R + Sbjct: 873 SVRMIMQVHDELVFEVKAEAVEAASQKIRALME 905 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%) Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + DI+ M N +++ VHDE+V E + + +LM Sbjct: 848 QGTAADIIKRAMIAVDAWLEQQNDNSVRMIMQVHDELVFEVKAEAVEAASQKIRALM 904 >gi|293391271|ref|ZP_06635605.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951805|gb|EFE01924.1| DNA polymerase I [Aggregatibacter actinomycetemcomitans D7S-1] Length = 933 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 102/561 (18%), Positives = 189/561 (33%), Gaps = 100/561 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + + + N F+ +F + GID+ + T +L+ T LA Sbjct: 412 LKPILENPNIGKIGQNLKFDMTIFARN-GIDLQGIEF-DTMLLSYTLDSTGRHNMDDLAK 469 Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H T + GK F + + + GEY D + T + Sbjct: 470 RYLGHQTISFEDIAGKGKNQLTFNQIPL----------------EQAGEYAAEDADVTMK 513 Query: 173 LFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L + E L + + G ID D + I + L+ Sbjct: 514 LQQVLWEKLEPQPGLVALYQSIELPLLSVLSRMERCGVLIDSDALFLQSNEITERLTALE 573 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 L + T L+ LF G+ ++ + S + + +LA L + Sbjct: 574 MQAYALAGQPFNLA-STKQLQEILFGKLGLPVLQKTPKGAPST-NEEVLEELAYSHELPK 631 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L + V+ GR+ + + TGR S QN+P + Sbjct: 632 VLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-- 688 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 A +R IA +G K++ AD + IE R++A ++ + Sbjct: 689 ----------------------NEAGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 726 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 I AFA G+DI+ +T A+ F P+++V+ EQR K + L Y Sbjct: 727 QGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFVFPARLGIS 786 Query: 452 ASHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQDQY--------------------P 490 + + + Q + TF D + +++ + Sbjct: 787 RADAQRYMDLYFQRYPNVQTFIHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGTE 846 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A+ + GTA +++K+A G+ + D + + V V Sbjct: 847 RVAINAPMQGTAADIIKRAMIKLD-GITRDDPD--------IHMIMQVHDELVFEVRSEK 897 Query: 551 MRRHKRDVHIVLPSSRRLVYS 571 + + + ++ LV Sbjct: 898 IAFFSDLIKQHMEAAAELVVP 918 >gi|298240|gb|AAB25243.1| DNA polymerase homolog [bacterium-like organism, citrus greening disease-associated, Peptide, 207 aa] Length = 207 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 188/205 (91%), Positives = 193/205 (94%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 SKLFIDIETRSP+PLPKVGVWAYAEQA+ITLCAYAWD EPVKLWDRT+QSA+PSDLLQYL Sbjct: 3 SKLFIDIETRSPKPLPKVGVWAYAEQAIITLCAYAWDGEPVKLWDRTKQSAIPSDLLQYL 62 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL F EH Sbjct: 63 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALRFPEH 122 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 LTK EEGKALIARFCKGSIDSPPYDCTRANHVQAW LF EYCKRDVEATRELFK L PL+ Sbjct: 123 LTKKEEGKALIARFCKGSIDSPPYDCTRANHVQAWALFREYCKRDVEATRELFKSLTPLN 182 Query: 182 DGERDLWLLDQTINDRGYRIDLDLV 206 ER LWLLDQ INDRGYRIDLDLV Sbjct: 183 PEERTLWLLDQEINDRGYRIDLDLV 207 >gi|260902594|ref|ZP_05910989.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] gi|308109599|gb|EFO47139.1| DNA polymerase I family protein [Vibrio parahaemolyticus AQ4037] Length = 931 Score = 293 bits (751), Expect = 4e-77, Method: Composition-based stats. Identities = 97/563 (17%), Positives = 185/563 (32%), Gaps = 111/563 (19%) Query: 33 CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82 ++A D+ + L L D+ V N ++ + + Sbjct: 373 LSFAIDEGIAAYVPVAHDYLDAPEQLDRDWVLEQLKPILEDDAQAKVGQNLKYDASVLAR 432 Query: 83 TLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFC 136 GI++ ++ T + + N + LAL F +H +GK + F Sbjct: 433 Y-GIEMKGIKY-DTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FN 489 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGER 185 + + + Y D + T L RL + E Sbjct: 490 QIEL----------------EQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEM 533 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I G ID + IA ++L++ ++ + + L+ L Sbjct: 534 PLVPVLSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEF-NMNSPKQLQAIL 592 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300 F G+ +V + S + + +LA D L +L + KL + L + ++ Sbjct: 593 FEKMGLPVVKKTPSGTPST-NEEVLHELALDYPLPKLILEYRGLAKLKSTYTDKLPKMIN 651 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ + + TGR S QN+P + Sbjct: 652 PSTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NE 686 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ Sbjct: 687 EGRRIRQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGV 746 Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474 ID+VS EQR K + L Y AK + ++ + + + Sbjct: 747 SIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMED 806 Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + +S + + A+ + GTA +++KKA Sbjct: 807 TRSAAADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVD 866 Query: 515 Q-------GVLQLWKDLTEGFAC 530 Q G ++L + + Sbjct: 867 QWIQEEGNGRVKLLMQVHDELVF 889 >gi|121587745|ref|ZP_01677506.1| DNA polymerase I [Vibrio cholerae 2740-80] gi|121548044|gb|EAX58122.1| DNA polymerase I [Vibrio cholerae 2740-80] Length = 525 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 99/528 (18%), Positives = 186/528 (35%), Gaps = 91/528 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLA 115 L L DE+ V N ++ + + G+++ R T + + N + LA Sbjct: 1 LKPLLEDESKAKVGQNLKYDASVMARY-GVELRGIR-HDTMLQSYVYNSVGGKHDMDSLA 58 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L F +H E A + + + + A + +Y D + T L + Sbjct: 59 LRFLQHSCISFEQVAGKGK-NQLTFNQI-----------ALEEAAQYAAEDADVTLRLHQ 106 Query: 176 RLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 R+ PL + E L + I G ID L+ + IA +L+++ Sbjct: 107 RIHPLIEQDAKLEQVYREIEMPLVPVLSRIERTGVMIDDMLLSAQSQEIALRLDQLEQNA 166 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L S L+ LF + ++ + S + + +LA D L ++ Sbjct: 167 YELAGQPFNLS-SPKQLQTILFEQMKLPVLQKTPSGTPST-NEEVLQELALDYPLPKVLI 224 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 225 EYRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------- 276 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A +G K++ D + IE R++A ++G+ Sbjct: 277 -----------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDQAL 319 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF +G+DI+ T A+ PID+VS EQR K + L Y AK Sbjct: 320 LDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGE 379 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 + ++ + + + + S + + A Sbjct: 380 AQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEITSRNAMRRKAAERAA 439 Query: 494 VKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +++KKA + G ++L + + V+E Sbjct: 440 INAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFEVKE 487 >gi|213610185|ref|ZP_03370011.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 870 Score = 293 bits (751), Expect = 5e-77, Method: Composition-based stats. Identities = 107/565 (18%), Positives = 191/565 (33%), Gaps = 112/565 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + Sbjct: 355 DTETDSLDNIAANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRQRALEL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V V N ++R + + GI++ + T + + + L+ Sbjct: 405 LKPLLEDEKVRKVGQNLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLS 462 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + ++ + G Y D + T Sbjct: 463 DRWLKHKTITFEDIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTL 506 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++ P + E L + + G +ID ++ K E I +L Sbjct: 507 QLHLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL 566 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S T L+ LF GI + + G S S + +LA D L Sbjct: 567 EKKAHDIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLP 624 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 625 KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP--- 680 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +V AD + IE R++A ++ Sbjct: 681 ---------------------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSR 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A + Sbjct: 720 DKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNI 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP-------------------- 490 + + + + + +A++ + Sbjct: 780 PRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGA 839 Query: 491 -EFAVKDKLIGTACELVKKAWRAKH 514 A+ + GTA +++K+A A Sbjct: 840 ERAAINAPMQGTAADIIKRAMIAVD 864 >gi|304399055|ref|ZP_07380924.1| DNA polymerase I [Pantoea sp. aB] gi|304353515|gb|EFM17893.1| DNA polymerase I [Pantoea sp. aB] Length = 928 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 111/578 (19%), Positives = 199/578 (34%), Gaps = 111/578 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L +++A+ + L L DE V N ++R + K D Sbjct: 379 AAYLPVAHDYLDAPDQL----DRAAVLAQLKPLLEDENAWKVGQNLKYDRGVLKNY---D 431 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLT-----KMEEGKALIARFCKGSI 140 I ++L N + LA + H T +GK + F + ++ Sbjct: 432 IELAGIKFDAMLESYILNSVVGKHDMDSLAARWLNHKTVTFQEIAGKGKNQLT-FNQIAL 490 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWL 189 + + Y D + T +L ++ P + E L Sbjct: 491 EQAAH----------------YAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLT 534 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + I G ID ++ + + + +L+ +L S T L++ LF Sbjct: 535 VISRIERNGVLIDQSILAQHSKELTARLAELELKAHELAGEPFNLS-STKQLQVILFEKQ 593 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303 GI + G S S + +LA D L ++ + KL + L ++ G Sbjct: 594 GIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPISG 652 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P Sbjct: 653 RVHTSY-HQAVTATGRLSSADPNLQNIP------------------------VRNDEGRR 687 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A+ G ++V AD + IE R++A ++ + + AFA GEDI+ T ++ F +DK Sbjct: 688 IRQAFVAAKGHRIVAADYSQIELRIMAHLSQDKGLLDAFAQGEDIHRATASEVFGVALDK 747 Query: 424 VSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW---- 475 VS EQR K + L Y A + A + + + + + Sbjct: 748 VSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQL 807 Query: 476 -------EQAESHHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRA------ 512 E E LW+ + A+ + GTA +++K+A A Sbjct: 808 AASNGYVETLEGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDEWLE 867 Query: 513 -----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L E S R + Sbjct: 868 QQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALME 905 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 17/119 (14%) Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V + + ++ RRL D+K + R Sbjct: 795 PGVLRYMENTRQLAASNGYVETLEGRRLWLPDIKSSNAI---RRKAAERAAINAP----- 846 Query: 601 IVQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q + DI+ M N +++ VHDE+V E + +LM Sbjct: 847 -MQGTAADIIKRAMIAVDEWLEQQNDNAVRMIMQVHDELVFEVKAEAVEEASQKIRALM 904 >gi|145301031|ref|YP_001143872.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] gi|142853803|gb|ABO92124.1| DNA polymerase I [Aeromonas salmonicida subsp. salmonicida A449] Length = 918 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 105/583 (18%), Positives = 188/583 (32%), Gaps = 101/583 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V A +A + + PV+L ++ + L L Sbjct: 344 DTETTSLDYMEARIVGVSFAVEAGKAAYVPFGHDYLGAPVQL----TEAVVLGKLKPLLE 399 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNFSE 120 D T + V N ++R + L DI + T + + +S LA + Sbjct: 400 DPTRLKVGQNLKYDRNVL---LNHDIDLQGIAYDTMLESYVLNSTASRHDMDSLAKRYLG 456 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-- 178 T E I N ++ + Y D + T L + L Sbjct: 457 VETTSFE-----------DIAGKGVKQLTFNQIEL-EQAAPYAAEDADITLRLHQTLWGQ 504 Query: 179 ---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 S+ E L + + G ID L+ + + I +L+ +L Sbjct: 505 LEAVPGLCQVFSEIELPLLPVLARMELLGTTIDPKLLHQQSQEIELRLAELERQAHELAG 564 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 S L LF G+ ++ + S + +LA+ L RL + Sbjct: 565 QEFNLS-SPKQLGEILFTKLGLPIIKKTPKGAPSTAEE-VLAELAETYELPRLLMEHRTL 622 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + GR+ + + TGR S QN+P Sbjct: 623 AKLKSTYTDKLPLMIKPQTGRVHTSY-HQAVAATGRLSSSDPNLQNIP------------ 669 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I S G KLV AD + IE R++A ++G+ + AFA Sbjct: 670 ------------VRNEQGRRIRQAFIPSAGYKLVAADYSQIELRIMAHLSGDKGLLTAFA 717 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+DI+ T A+ F +D V+ + R K + L Y AK + + Sbjct: 718 EGKDIHKATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYM 777 Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498 + + + + +S + ++ A+ + Sbjct: 778 DLYFERYPGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNAGLRKGAERAAINAPM 837 Query: 499 IGTACELVKKAWRAKHQGVL-------QLWKDLTEGFACVVQE 534 GTA +++K+A + ++ + + ++E Sbjct: 838 QGTAADIIKRAMINVDGWIRGIEDESIRMLMQVHDELVFEIRE 880 Score = 41.3 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 29/182 (15%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISARR 542 A ++ G A + V R + + L K L G A + R Sbjct: 725 ATAAEVFGVALDAVTTDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERY 784 Query: 543 VANVPRLVMRRHKRDVHIVLPS--SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 + + R + + + + RRL D+K + R Sbjct: 785 PGVLEYMERTRQQAEAQGYVETLFGRRLYLPDIKSRNA---GLRKGAERAAINAP----- 836 Query: 601 IVQAISRDILCEGMKN-------ATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652 +Q + DI+ M N +++ VHDE+V E + + M+ Sbjct: 837 -MQGTAADIIKRAMINVDGWIRGIEDESIRMLMQVHDELVFEIREEKLEEYTAIIKEKMS 895 Query: 653 KN 654 Sbjct: 896 AA 897 >gi|85060213|ref|YP_455915.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] gi|84780733|dbj|BAE75510.1| DNA polymerase I [Sodalis glossinidius str. 'morsitans'] Length = 927 Score = 293 bits (750), Expect = 6e-77, Method: Composition-based stats. Identities = 98/577 (16%), Positives = 195/577 (33%), Gaps = 106/577 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + D P +L +++ + + L + D T+ + N F+R + K+ D Sbjct: 379 AAYLPVGHDYLDAPDQL----DRATVLAALKPVMEDPTIGKIGQNLKFDRGVLKRY---D 431 Query: 88 IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I ++L + LA F +H T E GK F + ++ Sbjct: 432 IELAGIAFDTMLESYVLDSVAGRHDMDSLAERFLQHTTVSFEEIAGKGRNQLTFNQIAM- 490 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 + Y D + T L ++L P + E L + Sbjct: 491 ---------------EQAASYAAEDADVTLRLHQKLWPRIEQAPELRRVFEEIEMPLVPV 535 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID ++ +A+ ++L+ + +L + S T L+ L+ Sbjct: 536 LSRIERTGVLIDESILAAHSVELAKRLEELEGEAHQLAEEPFNLS-STKQLQEILYDKQK 594 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305 + ++ + G S + + +LA D L +L + KL + L + ++ + Sbjct: 595 LPVLKKTPGGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPQMINPLSKR 653 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +R Sbjct: 654 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 689 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA +V AD + IE R++A +A + + AFA G+DI+ T A+ F ++KV+ Sbjct: 690 QAFIAPPDALIVAADYSQIELRIMAHLARDPGLLNAFAAGKDIHRATAAEVFGMSLEKVT 749 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 ++QR K + L Y A+ S + + + + + + ++ Sbjct: 750 QDQRRSAKAINFGLIYGMSAFGLARQLSVPRSEAQKYMNLYFERYPGVLEYMERTRRQAS 809 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + A+ + GT+ +++K+A A Sbjct: 810 DRGYVETLDGRRLYLLDIHSRNGMRKKGVERAAINAPMQGTSADIIKRAMIAIDGWLQQE 869 Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + ++Q+ +L E + + Sbjct: 870 APPVRMIMQVHDELVFEVQRDAVESAKARIKALMEGC 906 Score = 41.3 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 34/118 (28%), Gaps = 16/118 (13%) Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V R+ ++ RRL D+ + R Sbjct: 795 PGVLEYMERTRRQASDRGYVETLDGRRLYLLDIHSRN---GMRKKGVERAAINAP----- 846 Query: 601 IVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q S DI+ M +++ VHDE+V E S + +LM Sbjct: 847 -MQGTSADIIKRAMIAIDGWLQQEAPPVRMIMQVHDELVFEVQRDAVESAKARIKALM 903 >gi|327395816|dbj|BAK13238.1| DNA polymerase I PolA [Pantoea ananatis AJ13355] Length = 928 Score = 293 bits (750), Expect = 7e-77, Method: Composition-based stats. Identities = 104/577 (18%), Positives = 195/577 (33%), Gaps = 109/577 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ A+ + L L D V N ++R + K D Sbjct: 379 AAYLPVAHDYLDAPEQL----DRDAVLAQLKPLLEDPDASKVGQNLKYDRGVLKNY---D 431 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I ++L N + L+ + H T E GK F + +++ Sbjct: 432 IELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQIALE 491 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190 + Y D + T +L ++ P + E L + Sbjct: 492 QAAH----------------YAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKV 535 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G ID ++ + + + +L+ +L S T L++ LF G Sbjct: 536 ISRVERNGVLIDQAILAQHSKELTSRLAELELKAHELAGEPFNLS-STKQLQVILFEKQG 594 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 I + G S S + +LA D L ++ + KL + L ++ GR Sbjct: 595 IKPTKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGR 653 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + Sbjct: 654 VHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNDEGRRI 688 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G ++V AD + IE R++A ++ + + AF+ GEDI+ T ++ F P+ KV Sbjct: 689 RQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSKV 748 Query: 425 SKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479 + EQR K + L Y A + A + + + E+ Q Sbjct: 749 TGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLA 808 Query: 480 SHHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRA------- 512 + + ++ + A+ + GTA +++K+A A Sbjct: 809 ASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIAVDDWLQK 868 Query: 513 ----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L + S R + Sbjct: 869 QTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALME 905 >gi|329296746|ref|ZP_08254082.1| DNA polymerase I [Plautia stali symbiont] Length = 929 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 117/616 (18%), Positives = 213/616 (34%), Gaps = 105/616 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S + + +A A+ + D P +L +++A+ L L Sbjct: 355 DLETDSLDTLSANIVGIAFAVAPGKAAYLPVAHDYLDAPPQL----DRAAVLKQLKPLLE 410 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 D V N ++R + K DI ++L N + LA + Sbjct: 411 DSKAAKVGQNLKYDRGVLKNY---DIELNGIKFDTMLESYCLNSVGGKHDMDSLAARWLN 467 Query: 121 HLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H T E GK + F + +++ + Y D + T +L Sbjct: 468 HKTVTFEEIAGKGKYQLT-FNQIALEQAAH----------------YAAEDADVTLQLHL 510 Query: 176 RLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ P + E L + + G ID +++ K + + +L++ Sbjct: 511 QMWPKLEQEAGPKQVFEAIEMPLVTVISRVERNGVLIDQNILAKHSQELTTRLAELEQKA 570 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L S T L+ LF I + G S S + +LA D L ++ Sbjct: 571 HELAGEPFNLS-STKQLQTILFEKQEIKPTKKTPGGAPST-SEKVLAELALDYPLPKVIL 628 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 629 EHRGLSKLKSTYTDKLPQMINPITGRVHTSY-HQAVTATGRLSSNDPNLQNIP------- 680 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA K++V AD + IE R++A ++ + Sbjct: 681 -----------------VRNEEGRRIRQAFIAGADKRIVAADYSQIELRIMAHLSQDKGL 723 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454 + AFA GEDI+ T ++ F + KVS EQR K + L Y A + A Sbjct: 724 LDAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGE 783 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFA 493 + + + + + +A++ LW+ + A Sbjct: 784 AKKYMDLYFERYPGVLRYMEATRAQAADKGYVETLDGRRLWLPDINSSNAIRRKAAERAA 843 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-SISARRVANVPRLVMR 552 + + GTA +++K+A A +LQ D + V E I VA + + Sbjct: 844 INAPMQGTAADIIKRAMIAVDGWLLQQNSDEVKMIMQVHDELVFEIHKDAVAGASQTIRE 903 Query: 553 RHKRDVHIVLPSSRRL 568 + + + +P + Sbjct: 904 LMENSMKLDVPLQVEV 919 >gi|242241361|ref|YP_002989542.1| DNA polymerase I [Dickeya dadantii Ech703] gi|242133418|gb|ACS87720.1| DNA polymerase I [Dickeya dadantii Ech703] Length = 931 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 103/602 (17%), Positives = 200/602 (33%), Gaps = 109/602 (18%) Query: 7 DIETRSPQPLPKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V A +A + + D P +L ++ + + L L Sbjct: 357 DTETDSLDTISTTLVGVSFAINAGEAAYLPLGHDYLDAPEQL----DRDKVLALLKPVLE 412 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 D +V+ + N F++ + + GI + + T + + + L+ + H Sbjct: 413 DASVLKIGQNLKFDKGVMARY-GITLRGIAF-DTMLESYVLDSVAGRHDMDSLSERYLNH 470 Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 T E GK F + ++ Y D + T L + L Sbjct: 471 KTITFEEIAGKGKNQLTFNQIPLEQAAV----------------YAAEDADVTLRLHQVL 514 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 D + L + + +G ID ++ + + + Q +L+ + Sbjct: 515 SEKLNKEPSLFQVFQDIDMPLVPILSRMERQGVLIDTAILAEHSKELTQRLAELEVRAHE 574 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + S T L+ L+ + + + S + + +LA D L ++ Sbjct: 575 LAGEVFNLS-STKQLQAILYEKLQLPVTKKTPKGAPST-NEEVLAELALDYPLPKVILEY 632 Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L ++ + T + TGR S QN+P Sbjct: 633 RGLAKLKSTYTDKLPMMINPLTKRVHTSYHQAVTATGRLSSSDPNLQNIP---------- 682 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G +V AD + IE R++A ++ + +KA Sbjct: 683 --------------VRNEEGRRIRQAFIAPEGYCIVAADYSQIELRIMAHLSCDAGLLKA 728 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGL 457 F++G DI+ T A+ F PIDKV+ EQR K + L Y A + + Sbjct: 729 FSDGLDIHRATAAEVFGLPIDKVTAEQRRSAKAINFGLIYGMSAFGLSRQLGIGRNEAQK 788 Query: 458 DLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKD 496 + + + + + + ++ + + A+ Sbjct: 789 YMNLYFERYPGVQHYMEQTRQQAAEQGYVATLDGRRLYLPDIHSRNAISRKAAERAAINA 848 Query: 497 KLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA +++KKA + ++Q+ +L V EG + + Sbjct: 849 PMQGTAADIIKKAMASIDAWLLSQEEPLINMIMQVHDELVFEVHESVLEGAKAKIKALME 908 Query: 546 VP 547 Sbjct: 909 SC 910 >gi|259906706|ref|YP_002647062.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|224962328|emb|CAX53783.1| DNA polymerase I [Erwinia pyrifoliae Ep1/96] gi|283476488|emb|CAY72303.1| DNA polymerase I [Erwinia pyrifoliae DSM 12163] Length = 929 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 114/615 (18%), Positives = 208/615 (33%), Gaps = 111/615 (18%) Query: 7 DIETRSPQPLPKV--GVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 D+ET S L G+ ++A A+ + D P +L ++S + + L L Sbjct: 355 DLETDSLDTLSANIIGL-SFATAPGEAAYLPVAHDYLDAPEQL----DRSDVLARLKPLL 409 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFS 119 D V N F+R + K+ DI + ++L N + LA + Sbjct: 410 EDPQAQKVGQNLKFDRGVLKRY---DIELQGIRFDTMLESYALNSVAGRHDMDTLASRWL 466 Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H T E GK F + +++ + Y D + T +L Sbjct: 467 NHKTVTFEEIAGKGKNQLTFNQIALEQAAH----------------YAAEDADVTLQLHV 510 Query: 176 RLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ P + E+ L + I G ID ++ + + +L+ Sbjct: 511 KMWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDPGILATHSQELGSRLAELELKA 570 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L S L+ LF GI + G S S + +LA D L ++ Sbjct: 571 HELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVIL 628 Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 629 EHRGLAKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP------- 680 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G ++V AD + IE R++A ++ + Sbjct: 681 -----------------VRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGL 723 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454 + AFA+ +DI+ T A+ F +DKVS EQR K + L Y A + A Sbjct: 724 LSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGE 783 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 + + + + + ++ + + A Sbjct: 784 AKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAA 843 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++K+A A + L + + V+ + V V + Sbjct: 844 INAPMQGTAADIIKRAMIAVD-------RWLEQQPSPEVKMIMQVHDELVFEVHADAVEA 896 Query: 554 HKRDVHIVLPSSRRL 568 + ++ S +L Sbjct: 897 ACAQIRALMEGSMKL 911 >gi|291619508|ref|YP_003522250.1| PolA [Pantoea ananatis LMG 20103] gi|291154538|gb|ADD79122.1| PolA [Pantoea ananatis LMG 20103] Length = 928 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 104/577 (18%), Positives = 195/577 (33%), Gaps = 109/577 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ A+ + L L D V N ++R + K D Sbjct: 379 AAYLPVAHDYLDAPEQL----DRDAVLAQLKPLLEDPDASKVGQNLKYDRGVLKNY---D 431 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I ++L N + L+ + H T E GK F + +++ Sbjct: 432 IELAGIKYDTMLESYILNSVVGKHDMDSLSARWLNHKTITFEEIAGKGKNQLTFNQIALE 491 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190 + Y D + T +L ++ P + E L + Sbjct: 492 QAAH----------------YAAEDADVTLQLHLKMWPELEKEAGPKKVFEQIEMPLLKV 535 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G ID ++ + + + +L+ +L S T L++ LF G Sbjct: 536 ISRVERNGVLIDQAILAQHSKELTSRLAELELKAHELAGEPFNLS-STKQLQVILFEKQG 594 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 I + G S S + +LA D L ++ + KL + L ++ GR Sbjct: 595 IKPTKKTPGGAPST-SEEVLAELALDYPLPKVILEHRGLSKLKSTYTDKLPLMINPVSGR 653 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + Sbjct: 654 VHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VRNDEGRRI 688 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G ++V AD + IE R++A ++ + + AF+ GEDI+ T ++ F P+ KV Sbjct: 689 RQAFVAGKGNRIVAADYSQIELRIMAHLSQDKGLLDAFSQGEDIHRATASEVFGVPLSKV 748 Query: 425 SKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479 + EQR K + L Y A + A + + + E+ Q Sbjct: 749 TGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEAKKYMDLYFERYPGVLRYMENTRQLA 808 Query: 480 SHHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRA------- 512 + + ++ + A+ + GTA +++K+A A Sbjct: 809 ASNGYVETLDGRRLWLPDIKSSNAIRRKAAERAAINAPMQGTAADIIKRAMIALDDWLQK 868 Query: 513 ----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L + S R + Sbjct: 869 QTDDAVRMIMQVHDELVFEIKAEAVDEASKQIRALME 905 >gi|261823708|ref|YP_003261814.1| DNA polymerase I [Pectobacterium wasabiae WPP163] gi|261607721|gb|ACX90207.1| DNA polymerase I [Pectobacterium wasabiae WPP163] Length = 929 Score = 293 bits (749), Expect = 7e-77, Method: Composition-based stats. Identities = 101/577 (17%), Positives = 196/577 (33%), Gaps = 106/577 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L +++ + + L L DE ++ + N F++ + ++ D Sbjct: 381 AAYLPLAHDYLDAPDQL----DRATVLALLKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433 Query: 88 IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I + ++L + LA + +H T E GK F + ++ Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLTFNQIAL- 492 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLL 190 + G Y D + T L + L + L + Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQTLWGKLQPHADLCQVFQTIDMPLVPV 537 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID ++ + + + +L+ +L S T L+ L+ Sbjct: 538 LSRIERTGVLIDPAILAEHSKELTTRLAELEIQAYELAGEEFNLS-STKQLQGILYEKQK 596 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305 + ++ + S + + +LA D L +L + KL + L ++ + Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +R Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +V AD + IE R++A ++G++ + AFANG DI+ T ++ F +DKV+ Sbjct: 692 QAFIAPKGYSIVAADYSQIELRIMAHLSGDEGLLNAFANGLDIHRATASEVFGIALDKVT 751 Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471 EQR K + L Y A + + + +Q + + + + Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811 Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------- 512 + S + + A+ + GTA +++KKA A Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD 871 Query: 513 --KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 K + ++Q+ +L + E + + Sbjct: 872 APKVKMIMQVHDELVFEIDDSIVEESISKIKVLMEGC 908 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 16/94 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 RRL D+ + A R +Q + DI+ + M Sbjct: 821 GRRLYLPDIHSRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLQKD 871 Query: 619 KNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651 +++ VHDE+V E D+ S+ + LM Sbjct: 872 APKVKMIMQVHDELVFEIDDSIVEESISKIKVLM 905 >gi|84386305|ref|ZP_00989333.1| DNA polymerase I [Vibrio splendidus 12B01] gi|84378729|gb|EAP95584.1| DNA polymerase I [Vibrio splendidus 12B01] Length = 937 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 110/570 (19%), Positives = 200/570 (35%), Gaps = 101/570 (17%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + GV AY A+ + D P +L ++ + L L D+T V N ++ Sbjct: 383 TEEGVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDTQAKVGQNLKYD 432 Query: 77 RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + GI++ + T + + N + LAL F +H E Sbjct: 433 MSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQ------- 483 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184 I N ++ + Y D + T L RL+ + E Sbjct: 484 ----IAGKGKKQLTFNQIELGEA-SPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIE 538 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + I G ID L+ + IA +L++ ++ + + L+ Sbjct: 539 VPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIAEQEF-NMNSPKQLQAI 597 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299 LF G+ ++ + S + + +LA D L +L + KL + L + + Sbjct: 598 LFEKMGLPVIKKTPSGAPST-NEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMI 656 Query: 300 S-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 657 NAETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 691 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ Sbjct: 692 EEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIG 751 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473 ID+V+ EQR K + L Y AK + + + E Sbjct: 752 VAIDQVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYMDTYFERYPGVMQYME 811 Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510 D A S +++ Y A+ + GTA +++KKA Sbjct: 812 DTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 871 Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGG 536 +A+ G ++L + + VQE Sbjct: 872 DEWIQAEGDGRVKLLMQVHDELVFEVQESA 901 >gi|126724960|ref|ZP_01740803.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] gi|126706124|gb|EBA05214.1| DNA polymerase I [Rhodobacterales bacterium HTCC2150] Length = 931 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 96/556 (17%), Positives = 181/556 (32%), Gaps = 101/556 (18%) Query: 46 DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D E + +L L+ D V+ + N ++ +F + G+ + A+ Sbjct: 394 DLAEGQLDTNVVLDLLKPVLEDPAVLKIGQNMKYDAKIFARY-GVKVAPFDDTMLMSYAQ 452 Query: 102 TNGLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 G + ++ T + GK+ I F K + Sbjct: 453 NAGKHNHSMDSLSERYLGHSPISIKTLLGTGKSAIT-FDKVPVADA-------------- 497 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVL 207 +Y D + T L++ L PL E R L + + G ++D D + Sbjct: 498 --VKYAAEDADVTLRLWQFLGPLLHIEKVTKVYERMERPLVPVLAEMEMHGIKVDRDTLS 555 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ AQ+ L+ +I + + L LF + + T Sbjct: 556 RMSNAFAQKMAGLEAEIHEKAGQSF-NVGSPKQLGEILFDKLELPGGKKGK-TGAYSTGA 613 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 + LA + L L + KL + L + ++ GR+ + GA+ TGR + Sbjct: 614 DILEDLATEHELPALVLDWRQLSKLKSTYTDALQDHINAETGRVHTSYSIAGAN-TGRLA 672 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R +A G L+ D Sbjct: 673 STDPNLQNIPIRS------------------------EEGRRIREAFVAEEGNVLLALDY 708 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA +A D +AF NG DI+ T ++ FN P++ + R K + + Y Sbjct: 709 SQIELRILAHVAKIDALKEAFYNGVDIHALTASQMFNVPLEGMDPMVRRQAKAINFGVIY 768 Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------- 488 G A+ + + + + + T+ D + Sbjct: 769 GISGFGLARNLRIPRAEAQAFINTYFERFPGIRTYMDETVEFAKEHNFVQTLFGRKIHTP 828 Query: 489 -----------YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFA 529 A+ + GTA +++++A + LQ+ +L A Sbjct: 829 DINAKGPGAGFAKRAAINAPIQGTAADVIRRAMIRMPAAIKDLPAKMLLQVHDELVFEVA 888 Query: 530 CVVQEGGSISARRVAN 545 E + + R+V Sbjct: 889 EDAVEDVTNAVRKVME 904 >gi|119773235|ref|YP_925975.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765735|gb|ABL98305.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] Length = 923 Score = 293 bits (749), Expect = 8e-77, Method: Composition-based stats. Identities = 106/583 (18%), Positives = 205/583 (35%), Gaps = 111/583 (19%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A + + P +L + A + L Sbjct: 346 IAVDTETTSLDYMQAELVGLSFAIEAGKAAYLPLGHDYPGAPSQLP----REATLAKLKP 401 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L + + V N ++ + GI + + T + + N + S LAL + Sbjct: 402 LLENPDIKKVGQNLKYDMSVLANA-GIQLKGVAF-DTMLESYVFNSVASRHDMDGLALKY 459 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + ++ + Y D + T L Sbjct: 460 LGHKNISFEEIAGKGAKQLTFNQIAL----------------EQAAPYAAEDADITLRLH 503 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I RG ID L+ + E +A++ +L++ Sbjct: 504 QHLWPRLSKEEGLESVFTELELPLIEVLSDIERRGVLIDSMLLGQQSEELARKIDELEQH 563 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ S T L+ F G ++ + S + +LA D L ++ Sbjct: 564 AHEIAGEPFNLS-STKQLQELFFTKLGYPVIKKTPKGAPSTAEE-VLVELALDYPLPKII 621 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L ++ GR+ + A+ TGR S QN+P + Sbjct: 622 LEHRSLTKLKSTYTDKLPLMINGRTGRVHTSYHQANAA-TGRLSSSDPNLQNIPIRT--- 677 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A GK+++ AD + IE R++A ++ ++ Sbjct: 678 ---------------------EEGRRIRQAFVAPEGKRILAADYSQIELRIMAHLSQDEG 716 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 ++AFA G+DI+ T A+ F+ + V+ EQR K + L Y A+ + Sbjct: 717 LLRAFAEGKDIHRATAAEVFDVAFETVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + + +A + + + Sbjct: 777 EAQSYIDTYFKRYPGVLKYMEETRAMASEQGYVSTLFGRRLYLPEIRDRNAMRRQAAERA 836 Query: 493 AVKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDL 524 A+ + GTA +++KKA A + Q ++Q+ +L Sbjct: 837 AINAPMQGTAADIIKKAMIAIQHWIKTETQGEIQMIMQVHDEL 879 >gi|315633357|ref|ZP_07888648.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] gi|315477857|gb|EFU68598.1| DNA-directed DNA polymerase I [Aggregatibacter segnis ATCC 33393] Length = 950 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 101/561 (18%), Positives = 187/561 (33%), Gaps = 100/561 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + + V N F+ +F + GI++ + T +L+ T LA Sbjct: 429 LKPILENPNIGKVGQNLKFDMTIFARN-GIELRGIEF-DTMLLSYTLDSTGRHNMDDLAK 486 Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H T + GK F + + + GEY D + T + Sbjct: 487 RYLGHQTIGFEDIAGKGKNQLTFNQIPL----------------EQAGEYAAEDADVTMK 530 Query: 173 LFKRLI------P-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L P E L + + G ID D + I + L+ Sbjct: 531 LQQVLWGKLQSQPSLVELYQSIELPLLGVLSRMERCGVLIDSDALFLQSNEITERLTALE 590 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +L + T L+ LF G+ ++ + S + + +LA L + Sbjct: 591 MQAHELAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEDVLEELAYSHELPK 648 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L + V+ GR+ + + TGR S QN+P + Sbjct: 649 VLVEHRGLSKLKSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-- 705 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA +G K++ AD + IE R++A ++ + Sbjct: 706 ----------------------NEEGRRIRQAFIARDGYKIIAADYSQIELRIMAHLSND 743 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 I AFA G+DI+ +T A+ F P+++V+ EQR K + L Y ++ Sbjct: 744 AGLINAFAQGKDIHRSTAAEIFGLPLEQVTSEQRRNAKAINFGLIYGMSSFGLSRQLGIS 803 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 + + + Q TF + S + + Sbjct: 804 RADAQRYMDLYFQRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPEINSSNAMRRKGAE 863 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A+ + GTA +++K A + + + D + + V V Sbjct: 864 RVAINAPMQGTAADIIKCAMIKLDE-ITRDDPD--------IHMIMQVHDELVFEVRSEK 914 Query: 551 MRRHKRDVHIVLPSSRRLVYS 571 + + + ++ LV Sbjct: 915 IAFFSDLIKQHMEAAAELVVP 935 >gi|317050146|ref|YP_004117794.1| DNA polymerase I [Pantoea sp. At-9b] gi|316951763|gb|ADU71238.1| DNA polymerase I [Pantoea sp. At-9b] Length = 928 Score = 293 bits (749), Expect = 9e-77, Method: Composition-based stats. Identities = 121/610 (19%), Positives = 213/610 (34%), Gaps = 103/610 (16%) Query: 7 DIETRSPQPLPKVGVW-AYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S L V A+A A+ + D P +L +++A+ + L L Sbjct: 354 DLETDSLDTLSANIVGLAFAVAPGEAAYLPVAHDYLDAPDQL----DRAAVLAQLKPLLE 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 D V N ++R + K DI ++L N + LA + Sbjct: 410 DSKAAKVGQNLKYDRGVLKNY---DIELNGIKYDTMLESYCLNSVGGKHDMDSLAARWLN 466 Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 H T E GK F + +I + G Y D + T +L + Sbjct: 467 HKTVTFEEIAGKGKNQLTFNQIAI----------------EQAGHYAAEDADVTLQLHLK 510 Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + P ++ E L + + G ID +++ K + + +L++ Sbjct: 511 MWPELEKEAGPKKVFTEIEMPLLKVISRVERNGVLIDQNILAKHSQELTTRLAELEQQAH 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L S T L+ LF GI + G S S + +LA D L ++ Sbjct: 571 DLAGEPFNLS-STKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILE 628 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 629 HRGLSKLKSTYTDKLPLMINPVTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-------- 679 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA K++V AD + IE R++A ++ + + Sbjct: 680 ----------------VRNDEGRRIRQAFIAGPDKRIVAADYSQIELRIMAHLSQDKGLL 723 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AFA GEDI+ T ++ F + KVS EQR K + L Y A + A Sbjct: 724 AAFAQGEDIHRATASEVFGVALSKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEA 783 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAV 494 + + + + + + ++ LW+ + A+ Sbjct: 784 KKYMDLYFERYPGVLRYMEETREQAAAKGYVETLDGRRLWLPDITSSNAIRRKAAERAAI 843 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG-SISARRVANVPRLVMRR 553 + GTA +++K+A A +L+ D + V E I VA+ + + Sbjct: 844 NAPMQGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIHQDAVASASDKIRQL 903 Query: 554 HKRDVHIVLP 563 + + + +P Sbjct: 904 MEGSMKLDVP 913 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 8/57 (14%) Query: 603 QAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + +++ VHDE+V E S + LM Sbjct: 848 QGTAADIIKRAMIAVDGWLLEQKDDKVKMIMQVHDELVFEIHQDAVASASDKIRQLM 904 >gi|293393657|ref|ZP_06637967.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] gi|291423992|gb|EFE97211.1| DNA-directed DNA polymerase I [Serratia odorifera DSM 4582] Length = 933 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 102/576 (17%), Positives = 199/576 (34%), Gaps = 109/576 (18%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 GV AY A+ + D PV+L +++ + L L DE + V N F++ L Sbjct: 382 GVAAY------LPVAHDYLDAPVQL----DRAYVLETLKPLLEDEKALKVGQNLKFDKSL 431 Query: 80 FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134 + ID+ + T + + + L+ + +H T E GK Sbjct: 432 LARY-DIDLRGIAY-DTMLESYVLDSVSGRHDMDSLSDRYLDHKTITFEEIAGKGKNQLT 489 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDG 183 F + ++ + Y D + T +L + P ++ Sbjct: 490 FNQIAL----------------EQAAPYAAEDADVTLQLHLAMWPKLKESTGQLKVFNEI 533 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + I G ID ++ + +++ +L+ +L + + T L+ Sbjct: 534 EMPLLPVLSHIERTGVLIDQHILAAHSKELSKRLGELEIQAHELAEEPFNLA-STKQLQA 592 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298 L+ + ++ + G S + + +LA D L ++ + KL + L Sbjct: 593 ILYEKQKLPVLKKTPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLM 651 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 ++ GR+ + + TGR S QN+P Sbjct: 652 INPVSGRVHTSY-HQAVTATGRLSSSDPNLQNIP------------------------VR 686 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R IA G ++V AD + IE R++A ++ + + AFA G+DI+ T + F Sbjct: 687 NDEGRRIRQAFIAPAGYRIVAADYSQIELRIMAHLSQDRGLLNAFAAGKDIHRATAGEVF 746 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P+DKV+ EQR K + L Y A+ + + + + Sbjct: 747 GLPLDKVTNEQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYM 806 Query: 474 DWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + ++ + A+ + GTA +++K+A A Sbjct: 807 ERTRQQASEQGYVSTLDGRRLYLPDVRSSNGMRRKAAERAAINAPMQGTAADIIKRAMIA 866 Query: 513 KH-------QGVLQLWKDLTEGFACVVQEGGSISAR 541 Q ++++ + + V E A Sbjct: 867 VDAWLQGQQQPLVRMIMQVHDELVFEVHESAMDDAC 902 >gi|292897759|ref|YP_003537128.1| DNA polymerase I [Erwinia amylovora ATCC 49946] gi|291197607|emb|CBJ44701.1| DNA polymerase I [Erwinia amylovora ATCC 49946] Length = 929 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 109/602 (18%), Positives = 199/602 (33%), Gaps = 113/602 (18%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S + + +A A+ + D P +L ++S + + L L Sbjct: 355 DLETDSLDTLSANIIGISFATAPGEAAYLPVAHDYLDAPEQL----DRSDVLARLKPLLE 410 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 D V N F+R + K+ DI ++L N + LA + + Sbjct: 411 DPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYALNSVAGRHDMDTLASRWLQ 467 Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 H T E GK F + +++ + Y D + T +L + Sbjct: 468 HKTVTFEEIAGKGKNQLTFNQIALEQAAH----------------YAAEDADVTLQLHLK 511 Query: 177 LIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + P + E+ L + I G ID ++ + + +L+ Sbjct: 512 MWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELELKAH 571 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L S L+ LF GI + G S S + +LA D L ++ Sbjct: 572 ELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILE 629 Query: 286 GSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 630 HRGLAKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP-------- 680 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +++ AD + IE R++A ++ + + Sbjct: 681 ----------------VRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLL 724 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AFA+ +DI+ T A+ F +DKVS EQR K + L Y A + A Sbjct: 725 SAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEA 784 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + + + + + + A+ Sbjct: 785 KKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDINASNAMRRKAAERAAI 844 Query: 495 KDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +++K+A A + ++Q+ +L E R + Sbjct: 845 NAPMQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDELVFEVQADAVEAACAQIRAL 904 Query: 544 AN 545 Sbjct: 905 ME 906 >gi|254472124|ref|ZP_05085524.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] gi|211958407|gb|EEA93607.1| DNA polymerase I superfamily protein [Pseudovibrio sp. JE062] Length = 980 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 95/497 (19%), Positives = 175/497 (35%), Gaps = 75/497 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D V+ +A N ++ ++ K+ G+++ A G+ + + Sbjct: 454 LKPMLEDPAVLKIAQNMKYDWLVLKRY-GVEMAPFDDTMLLSYALDAGMGGNGMDELSQR 512 Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEAT 170 + +E GK+ I F K +D Y A+ ++ W++ E Sbjct: 513 WLNHTPIPFKEVCGSGKSQI-SFDKVPLDKATAYAAEDADVTLRLWKILKPRLA--AEEM 569 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +++RL ER + + RG ID ++ L AQ +L+ +I + Sbjct: 570 TVVYERL------ERPMVATLAKMERRGISIDRQMLSLLSGEFAQGAARLESEIHDVAGE 623 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAI 289 I + L LF G+ ++ T S S + LA L + Sbjct: 624 -IFNVGSPKQLGEILFGKMGLPGGKKTK-TGAWSTSASVLDDLAAQGHELPSKIVEWRQL 681 Query: 290 LKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L ++ GR+ + ++ TGR S QN+P + Sbjct: 682 SKLKSTYTDALPSFINQETGRVHTSFSL-ASTSTGRLSSSEPNIQNIPIRT--------- 731 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA GKKL+ AD + IE RVLA +A +AFA Sbjct: 732 ---------------SEGRKIRQAFIAEKGKKLISADYSQIELRVLAHMADIPQLKQAFA 776 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +G DI+ T ++ F PI+ + R K + + Y G A G + Sbjct: 777 DGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLGIARGEAGDYI 836 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + + + + + + + + M+ Y A+ + Sbjct: 837 KTYFERFPGIKDYMEETKKFVHANGYVETIFGRRAHYPDVNTKNPNMRQFYERAAINAPI 896 Query: 499 IGTACELVKKAWRAKHQ 515 G+A +++++A + Sbjct: 897 QGSAADIIRRAMVRMDE 913 >gi|303250265|ref|ZP_07336465.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252030|ref|ZP_07533930.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650881|gb|EFL81037.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860499|gb|EFM92512.1| hypothetical protein appser6_5490 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 957 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 99/560 (17%), Positives = 192/560 (34%), Gaps = 99/560 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L + V + N ++ +F G+ + + T + + T L Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + H T E GK F K +ID + +Y D + T Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAID----------------IASQYAAEDADVT 534 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P ++ E L + I G ID + +L I Q + Sbjct: 535 MKLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAE 594 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G K+V AD + IE R++A +A Sbjct: 713 ------------------------NEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLA 748 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808 Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488 + ++++ Q + F + +S + + Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKA 868 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + GTA +++K A + + E ++Q + V V Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919 Query: 549 LVMRRHKRDVHIVLPSSRRL 568 ++ + + + + + +L Sbjct: 920 ELIEHYSQLIKAEMEKAIQL 939 >gi|189425854|ref|YP_001953031.1| DNA polymerase I [Geobacter lovleyi SZ] gi|189422113|gb|ACD96511.1| DNA polymerase I [Geobacter lovleyi SZ] Length = 888 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 93/541 (17%), Positives = 178/541 (32%), Gaps = 85/541 (15%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L + + V N F+ + G+++ W T + + Sbjct: 360 ETVLERLRPAFGNPAIRKVGQNLKFDLQILA-VAGLEVQ-GSWCDTMLCSYLLNPSRG-- 415 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L EHL + K I + +A Y D +AT Sbjct: 416 GHGLDALAQEHLNHKMISYDEVTGSGKNRICFSEVEVEKAT---------RYAAEDADAT 466 Query: 171 RELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L ++L+P+ + E L + + G +DL + +L Q ++L Sbjct: 467 WLLHEKLLPMLKEQGLEKLLFELEMPLMEIMTRMEQHGVLLDLAYLAELGNGFGQRMQEL 526 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ I++L G + L LF G+ ++G + +T LA++ + Sbjct: 527 EKRIIELAGGPF-NLNSPKQLEEVLFERLGLQAGKKTKGKTGRSTDNEVLTGLAEEHEIA 585 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + KL + L++ GR+ + + TGR S QN+P + Sbjct: 586 KLLLDYRGLTKLKSTYTDALAKLTDRQGRVHTSYN-QAVTATGRLSSSDPNLQNIPIRT- 643 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G ++ AD + IE RVLA ++ + Sbjct: 644 -----------------------DEGRRIREAFIAPPGCVILAADYSQIELRVLAHLSQD 680 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 AF+ EDI+ T ++ F + V+ E R K + + Y G AK Sbjct: 681 PVFCDAFSQDEDIHTRTASEVFGLFPEMVTSEMRRQAKTINFGIIYGQGAFSLAKQLGVA 740 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 + + + + F D A + + ++ Sbjct: 741 RNVAEKFIAAYKERHSGAIAFLDSCIASAKETGYVTTILGRKLPIADITSSNGNLRSFAE 800 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544 A+ + G+A +++K+A + + +L + + V E R + Sbjct: 801 RNAINYPIQGSAADIIKQAMLGVDRAIRAEGLQSRLIMQVHDELVFEVLETELEQMRELV 860 Query: 545 N 545 N Sbjct: 861 N 861 >gi|253690587|ref|YP_003019777.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251757165|gb|ACT15241.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 929 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 104/577 (18%), Positives = 194/577 (33%), Gaps = 106/577 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L DR + A+ L DE ++ + N F++ + ++ D Sbjct: 381 AAYLPLAHDYLDAPEQL-DRAKVLAL---FKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433 Query: 88 IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I + ++L + LA + H T E GK F + ++ Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLNHKTITFEEIAGKGKNQLTFNQIAL- 492 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLL 190 + G Y D + T L ++L + L + Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQKLWGKLQPHADLCQVFQTIDMPLVPV 537 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID ++ + + + +L+ +L S T L+ L+ Sbjct: 538 LSRIERTGVLIDPAILAEHSKELTTRLAELETQAYELAGEEFNLS-STKQLQGILYEKQK 596 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305 + ++ + S + + +LA D L +L + KL + L ++ + Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +R Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +V AD + IE R++A ++G+ + AFANG DI+ T ++ F T +DKV+ Sbjct: 692 QAFIAPKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGTALDKVT 751 Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471 EQR K + L Y A + + + +Q + + + + Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811 Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + S + + A+ + GTA +++KKA A Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLQKD 871 Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + ++Q+ +L V E + + Sbjct: 872 APQVKMIMQVHDELVFEIHDSVIEESISKIKTLMEGC 908 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 16/94 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 RRL D+ + A R +Q + DI+ + M Sbjct: 821 GRRLYLPDIHSRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLQKD 871 Query: 619 KNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 +++ VHDE+V E D+ S+ + +LM Sbjct: 872 APQVKMIMQVHDELVFEIHDSVIEESISKIKTLM 905 >gi|227355154|ref|ZP_03839565.1| DNA polymerase I [Proteus mirabilis ATCC 29906] gi|227164941|gb|EEI49788.1| DNA polymerase I [Proteus mirabilis ATCC 29906] Length = 949 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 110/617 (17%), Positives = 201/617 (32%), Gaps = 109/617 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP-SDLLQY 60 D ET S + A + ++A + +P ++L Sbjct: 375 DTETDSLNNI----------DARLIGLSFAVEPGKAAYIPLRHDYLDAPEQLPVDEVLTA 424 Query: 61 LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L+ D+T++ + N F+R + + GI++ + T + + + S LA Sbjct: 425 LKPILEDKTILKIGQNLKFDRGIMENE-GIELNGI-YFDTMLESYVLNSVSSRHDMDTLA 482 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H T E IA KG + + +A Y D + T L + Sbjct: 483 EKHLNHKTTTFE---EIAGKGKGQLTFNQIEVEQAT---------LYAAEDADITLLLHQ 530 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P D E L + + +G ID ++ + I Q +++++ Sbjct: 531 ALYPQIEAIAPLKHVYHDIEMPLVPVLSRMERKGVLIDAQVLAMQSQEITQRLAEIEKET 590 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L S L+ LF + ++ + S + + LA L RL Sbjct: 591 FALAGQEFNLS-SPKQLQEILFEKLNLPIIKKTPKGAPST-NEEVLEALAHSHELPRLIL 648 Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V+S + T + TGR S QN+P Sbjct: 649 EHRGLAKLKSTYTDKLPLMVNSKTKRVHTSYHQAVTATGRLSSRDPNLQNIP-------- 700 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I +G K+V AD + IE R++A ++ + + Sbjct: 701 ----------------VRNEEGRRIRQAFIVRDGFKIVAADYSQIELRIMAHLSQDKGLL 744 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AFA G+DI+ T ++ F P+D+V+ EQR K + L Y A + Sbjct: 745 DAFAQGKDIHRATASEVFGIPLDEVTAEQRRSAKAINFGLIYGMSAFGLSQQIGVERKEA 804 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAV 494 + + + + + + ++ + A+ Sbjct: 805 QRYMDLYFERYPGVLDYMERTRKQASQQGYVETLDGRRLYLPEINSKNAIRRKASEREAI 864 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + GTA +++KKA A + V + V V + + Sbjct: 865 NAPMQGTAADIIKKAMIAVD-------NWICHECPDDVHMIMQVHDELVFEVRESYLEKA 917 Query: 555 KRDVHIVLPSSRRLVYS 571 +H ++ SS L Sbjct: 918 NAMIHKLMESSMELAIP 934 >gi|146313733|ref|YP_001178807.1| DNA polymerase I [Enterobacter sp. 638] gi|145320609|gb|ABP62756.1| DNA polymerase I [Enterobacter sp. 638] Length = 930 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 108/605 (17%), Positives = 204/605 (33%), Gaps = 105/605 (17%) Query: 7 DIETRSPQPLPKVGVW-AYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V ++A + A+ + D P ++ + + L L Sbjct: 357 DTETDSLDNISANMVGLSFATEPGMAAYVPVAHDYLDAPNQI----SRERVLELLKPLLE 412 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 DE V N F+R + + GI++ + T + + + L+ + +H Sbjct: 413 DEKAKKVGQNLKFDRGILQNY-GIELRGIAY-DTMLESYILNSVAGRHDMDSLSDRWLKH 470 Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 T E GK F + ++ + G Y D + T +L ++ Sbjct: 471 KTVTFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVTLQLHLKM 514 Query: 178 IPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P E L + I G +ID ++ K E +A +L++ + Sbjct: 515 WPKLQKQEGPLNVFEHIEMPLVPVISRIERNGVKIDPAVLHKHSEELALRLSELEQKAHE 574 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + S T L+ LF GI + + G S S + +LA D L ++ Sbjct: 575 IAGEPFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILQY 632 Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L ++ T + TGR S QN+P Sbjct: 633 RGLAKLKSTYTDKLPLMINPKTSRVHTSYHQAVAATGRLSSTEPNLQNIP---------- 682 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA +V AD + IE R++A ++ + + A Sbjct: 683 --------------VRNEEGRRIRQAFIAPKDYLIVSADYSQIELRIMAHLSRDKGLLTA 728 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGL 457 FA G+DI+ T A+ F P+D V+ +QR K + L Y A + Sbjct: 729 FAEGKDIHRATAAEVFGLPLDSVTNDQRRSAKAINFGLIYGMSAFGLSRQLNIPRKESQK 788 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKD 496 + + + + + +A++ + A+ Sbjct: 789 YMDLYFERYPGVLEYMERTRAQAKEKGYVETLDGRRLYLPDITSSNAARRAGAERAAINA 848 Query: 497 KLIGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRL 549 + GTA +++K+ AW K + +++ + + V E ++++ + Sbjct: 849 PMQGTAADIIKRAMIAVDAWLEKDKPRVRMIMQVHDELVFEVHHEDLEAVSKKIHELMEG 908 Query: 550 VMRRH 554 M Sbjct: 909 SMTLD 913 >gi|260912940|ref|ZP_05919425.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] gi|260632930|gb|EEX51096.1| DNA-directed DNA polymerase I [Pasteurella dagmatis ATCC 43325] Length = 930 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 105/589 (17%), Positives = 198/589 (33%), Gaps = 108/589 (18%) Query: 2 SKLFIDIET----RSPQPLP------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS 51 + +D ET L + G AY + + P ++ + Sbjct: 354 KLIAVDTETDNLDYMSANLVGISFALENGEAAY------LPLRHNYIGAPQQI----DFD 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 S L L + + V N ++ +F + GI++ + T +L+ Sbjct: 404 TALSRLKPILENPVIEKVGQNIKYDLSIFARN-GINVQGVTY-DTMLLSYVLDSTGRHNM 461 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LA + H T E IA KG + + Y D + T Sbjct: 462 DDLAKRYLGHQTISFE---EIAGKGKGQLTF---------DQIPLEHATTYAAEDADITM 509 Query: 172 ELFKRLIP-LSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L +S+ E L + + G ID + +L IA+ L Sbjct: 510 KLQQVLWEKVSEQPTLVKLYRTMELPLLSVLSRMERNGVLIDSNTLLTQSNKIAERLTAL 569 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ +L + T L+ LF G+ ++ + S + + +LA D L Sbjct: 570 EQQAYELAGQTFNLA-STKQLQEILFDKLGLPVLKKTPKGAPST-NEEVLEELAYDHELP 627 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 628 KLLVEHRGLSKLKSTYTDKLPQMINKHTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R I G +V AD + IE R++A ++ Sbjct: 686 -----------------------NEEGRRIRQAFIPREGFTMVAADYSQIELRIMAHLSK 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + I AF+ G+DI+ +T A+ F P+++V+ EQR K + L Y ++ Sbjct: 723 DQGLINAFSEGKDIHRSTAAEIFGLPLEQVTSEQRRSAKAINFGLIYGMSSFGLSRQLGI 782 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + Q TF S + + Sbjct: 783 PRNDAQKYMDLYFQRYPGVQTFMTDIRETAKAQGYVATLFDRRLYLPDINSSNAIRRKAA 842 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQ 533 A+ + GTA +++K+A + ++ Q+ + + V+ Sbjct: 843 ERVAINAPMQGTAADIIKRAMIDLDKQIVGNPDIQMIMQVHDELVFEVR 891 >gi|53728836|ref|ZP_00134878.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207957|ref|YP_001053182.1| DNA polymerase I [Actinobacillus pleuropneumoniae L20] gi|126096749|gb|ABN73577.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 957 Score = 292 bits (747), Expect = 1e-76, Method: Composition-based stats. Identities = 98/560 (17%), Positives = 192/560 (34%), Gaps = 99/560 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L + V + N ++ +F G+ + + T + + T L Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + H T E GK F K +ID +Y D + T Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SKYAAEDADVT 534 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L+P ++ E L + I G ID + +L I Q + Sbjct: 535 MKLHQVLVPELDKTPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAE 594 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653 Query: 280 NRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K+V AD + IE R++A +A Sbjct: 713 ------------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLA 748 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 749 NDEGMITAFAEGKDIHCATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808 Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488 + ++++ Q + F + +S + + Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKA 868 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + GTA +++K A + + + ++Q + V V Sbjct: 869 AERVAINAPMQGTAADIIKVAMIDIDKAIRG-----DDNIKMIMQ----VHDELVFEVKE 919 Query: 549 LVMRRHKRDVHIVLPSSRRL 568 ++ + + + + + +L Sbjct: 920 ELIEHYSQLIKAEMEKAIQL 939 >gi|119384590|ref|YP_915646.1| DNA polymerase I [Paracoccus denitrificans PD1222] gi|119374357|gb|ABL69950.1| DNA polymerase I [Paracoccus denitrificans PD1222] Length = 940 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 98/545 (17%), Positives = 178/545 (32%), Gaps = 97/545 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D +V+ + N ++ + + GI + A+ G + + L Sbjct: 417 LKPVLEDPSVLKIGQNIKYDWKVLARH-GIRMVPLDDTMLLSYAQNAGAHNHGMDELADL 475 Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + GK+ I F + +ID EY D E T Sbjct: 476 YLGHRCLPIKDLIGSGKSQIN-FSQVAIDKA----------------SEYAAEDAEVTWR 518 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L++ L P ER + + + G RID + + ++ AQ+ L+ Sbjct: 519 LWRHLRPKLAPNHVTTAYERLERPMIAVLADMEMAGIRIDSEHLKRMSNAFAQKMAGLEA 578 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I +L G + L LF G+ T + LA + L Sbjct: 579 EIHELAGGPF-NVGSPKQLGEILFERMGL-AGGKQGKTGAFSTGAEVLEDLAAEGHELPA 636 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 AI KL + L V+ GR+ + GA +TGR + QN+P + Sbjct: 637 RVLDWRAISKLKSTYTDALPLHVNPETGRVHTSYSIAGA-QTGRLASTDPNLQNIPVRT- 694 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A+ G +LV D + IE R+LA +A Sbjct: 695 -----------------------DEGRRIREAFVAAPGMRLVSLDYSQIELRILAHVAQI 731 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 +AF +G DI+ T ++ F P++ + R K + + Y G A+ + Sbjct: 732 PALQQAFRDGIDIHAMTASQMFGVPVEGMDPMIRRRAKAINFGVIYGISGFGLARNLRIP 791 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY--------------------PE 491 + + + + + D A + Sbjct: 792 RAEAQAFIDTYFERFPEIRAYMDRTVAGAKQDGFVRTLFGRRIMTPGINQSGPAAGGARR 851 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVANVP 547 A+ + G A +++++A Q + ++ + + V+E + V Sbjct: 852 AAINAPIQGAAADIIRRAMIRMPQAIAHLPARMLLQVHDELVFEVEEAAVPE---LVEVA 908 Query: 548 RLVMR 552 R VM+ Sbjct: 909 RGVMQ 913 >gi|292486521|ref|YP_003529387.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|291551934|emb|CBA18971.1| DNA polymerase I [Erwinia amylovora CFBP1430] gi|312170589|emb|CBX78852.1| DNA polymerase I [Erwinia amylovora ATCC BAA-2158] Length = 891 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 109/602 (18%), Positives = 199/602 (33%), Gaps = 113/602 (18%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S + + +A A+ + D P +L ++S + + L L Sbjct: 317 DLETDSLDTLSANIIGISFATAPGEAAYLPVAHDYLDAPEQL----DRSDVLARLKPLLE 372 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 D V N F+R + K+ DI ++L N + LA + + Sbjct: 373 DPQSQKVGQNLKFDRGVLKRY---DIELLGIRFDTMLESYALNSVAGRHDMDTLASRWLQ 429 Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 H T E GK F + +++ + Y D + T +L + Sbjct: 430 HKTVTFEEIAGKGKNQLTFNQIALEQAAH----------------YAAEDADVTLQLHLK 473 Query: 177 LIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + P + E+ L + I G ID ++ + + +L+ Sbjct: 474 MWPELEKEQGPKNVFEQVEMPLVPVISRIERNGVLIDQSILAVHSQELGSRLAELELKAH 533 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L S L+ LF GI + G S S + +LA D L ++ Sbjct: 534 ELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVILE 591 Query: 286 GSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 592 HRGLAKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP-------- 642 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +++ AD + IE R++A ++ + + Sbjct: 643 ----------------VRNDEGRRIRQAFIAPQGHRILAADYSQIELRIMAHLSQDKGLL 686 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AFA+ +DI+ T A+ F +DKVS EQR K + L Y A + A Sbjct: 687 SAFASEQDIHRATAAEVFGVALDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGEA 746 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + + + + + + A+ Sbjct: 747 KKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDINASNAMRRKAAERAAI 806 Query: 495 KDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +++K+A A + ++Q+ +L E R + Sbjct: 807 NAPMQGTAADIIKRAMIAVDSWLEQQPSPEVKMIMQVHDELVFEVQADAVEAACAQIRAL 866 Query: 544 AN 545 Sbjct: 867 ME 868 >gi|145636579|ref|ZP_01792246.1| DNA polymerase I [Haemophilus influenzae PittHH] gi|145270105|gb|EDK10041.1| DNA polymerase I [Haemophilus influenzae PittHH] Length = 930 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 105/597 (17%), Positives = 203/597 (34%), Gaps = 108/597 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEAAYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 + + L + + + N F+ +F + GI++ + T +L+ T Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LA + H T E A + + + + P + EY D + T Sbjct: 462 DDLAKRYLGHETIAFESIAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTM 509 Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L E L + + G ID D + IA L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTAL 569 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ L + T L+ LF G+ ++ + S + + +LA L Sbjct: 570 EKQAYALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELAYSHELP 627 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +V AD + IE R++A ++G Sbjct: 686 -----------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---------- 444 + I AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGI 782 Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQY 489 A+ + + +QQF +++ + + + S + + Sbjct: 783 SRPDAQKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGA 842 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K+A + + ++ + + V+ R Sbjct: 843 ERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEKVAFFR 899 >gi|52840354|ref|YP_094153.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627465|gb|AAU26206.1| DNA polymerase I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 896 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 110/599 (18%), Positives = 204/599 (34%), Gaps = 109/599 (18%) Query: 6 IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 ID ET + L + + E A A+ D +L + + + L L Sbjct: 325 IDTETTNLDVMQAELVGISLAVEEENASYIPLAHT--DGSTQLV----KEEVLTALKPIL 378 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120 + + + N ++ + K GI + + T + + LAL + Sbjct: 379 ENPAIGKIGQNIKYDYSVLKNY-GITLKGIGY-DTMLESYVLNSGAGRHDMDSLALKYLG 436 Query: 121 HLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + T + GK RF + + G Y D + T L + Sbjct: 437 YKTISYEDVAGKGAKQLRFDQIPVVKA----------------GIYAAEDADITLRLHHK 480 Query: 177 LIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L P+ D E L + + G ID ++ K + ++ K L+++ V+L Sbjct: 481 LYPMLDESLRNVLHDIEIPLLTVLADMEMHGVLIDPVILEKHGSRLKEQMKSLEQEAVQL 540 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L+ LF + +V + T + + S + +LA D L + Sbjct: 541 AGKAF-NLNSPKQLQEILFDEQKLPVVAKTP-TGQPSTAESVLQELAFDYRLPAVILEYR 598 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ KL + L + ++ T + TGR S QN+P + Sbjct: 599 SLSKLVSTYIDALPKRINPKTHRVHTSYNQAVAATGRLSSSDPNLQNIPIRS-------- 650 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA G ++ AD + IE R++A ++ +D ++AF Sbjct: 651 ----------------EEGRLIRTAFIAPEGSLIMAADYSQIELRIMAHLSQDDNLLRAF 694 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 ANG DI+ T ++ F T +D VSKEQR K + L Y AK Sbjct: 695 ANGWDIHAATASEIFQTNLDAVSKEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQDAQHY 754 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 + + + + + + ++H +L Q A+ Sbjct: 755 IDTYFRRYPKVLEYMERTRKQAHQLGYVETLFGRRLYLPEINSRNLMRQKAAERTAINGP 814 Query: 498 LIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA +++KK A + ++Q+ +L E ++ Sbjct: 815 MQGTAADIIKKTMLAISSWEHSQKNPSAKMIMQVHDELVFEVRKEAVEECRAIIHKLME 873 >gi|148976539|ref|ZP_01813235.1| DNA polymerase I [Vibrionales bacterium SWAT-3] gi|145964115|gb|EDK29372.1| DNA polymerase I [Vibrionales bacterium SWAT-3] Length = 932 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 103/562 (18%), Positives = 199/562 (35%), Gaps = 89/562 (15%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + GV AY A+ + D P +L ++ + L L D+ V N ++ Sbjct: 378 TEEGVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDAQAKVGQNLKYD 427 Query: 77 RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKA 130 + + GI++ + T + + N + LAL F +H +GK Sbjct: 428 MSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKK 485 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 + ++ PY A+ E + +++ + E L + Sbjct: 486 QLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKAIYE------EIEVPLIPV 539 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G +D L+ + IA +L++ ++ + + L+ LF G Sbjct: 540 MSRIERTGVFVDDMLLGAQSQEIAVRLDELEQKAYEIAEQEF-NMNSPKQLQAILFEKMG 598 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGR 304 + ++ + S + + +LA D L +L + KL + L + ++ GR Sbjct: 599 LPVIKKTPSGSPST-NEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGR 657 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 658 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 692 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ I+ V Sbjct: 693 RQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVNIEDV 752 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAE 479 + EQR K + L Y AK + + + ED A Sbjct: 753 TSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDTRSAA 812 Query: 480 SHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW-------RA 512 S +++ Y A+ + GTA +++KKA +A Sbjct: 813 SEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIQA 872 Query: 513 KHQGVLQLWKDLTEGFACVVQE 534 + G ++L + + V+E Sbjct: 873 EGDGRVKLLMQVHDELVFEVEE 894 >gi|89054174|ref|YP_509625.1| DNA polymerase I [Jannaschia sp. CCS1] gi|88863723|gb|ABD54600.1| DNA polymerase I [Jannaschia sp. CCS1] Length = 929 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 98/519 (18%), Positives = 192/519 (36%), Gaps = 73/519 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D +VM VA N+ ++ + G+++ A GL + + Sbjct: 407 LQPMLEDRSVMKVAQNAKYDVKVLANY-GVEVAPIDDTMLLSYALHAGLHNHGMDGLAER 465 Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATR 171 + + GK+ I D+ PY A+ + +LF + V T Sbjct: 466 YLGHTPLPIKSLIGSGKSQITFDRVPIADAAPYAAEDADITLRFHKLFKPKLHQ-VGVT- 523 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++++RL ER L + + G ++D D++ ++ AQ+ L+ +I +L Sbjct: 524 KVYERL------ERPLVPVLARMERSGIKVDKDVLSRMSNAFAQKMAGLEAEIHELAGES 577 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ + T IL +L+ S Sbjct: 578 F-NVGSPAQLGEILFDKMGLQGGKKGKTGKYSTGADILEDLATEHDLPGRVLDWRQLSKL 636 Query: 288 AILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + +++D GR+ + GA+ TGR + QN+P + Sbjct: 637 KSTYTDALQDHINADTGRVHTSYSIAGAN-TGRLASTDPNLQNIPIRS------------ 683 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A GK LV D + IE R+LA IAG D AF +G+ Sbjct: 684 ------------EEGRRIREAFVAEPGKVLVALDYSQIELRILAHIAGIDALKDAFKDGQ 731 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T ++ FN P+++++ + R K + + Y G A+ + + + ++ Sbjct: 732 DIHAATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGLARNLRIPRAEAQGFIDRY 791 Query: 463 SQNVKSTSTFE-DWEQAESHHLWMQDQYPEF-------------------AVKDKLIGTA 502 + T+ D ++ +L++Q + A+ + GTA Sbjct: 792 FERFPGIRTYMDDTKKFAKENLYVQTLFGRKIHTPEINAKGPGAGFAGRAAINAPIQGTA 851 Query: 503 CELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGS 537 +++++A + ++ + + V E + Sbjct: 852 ADIIRRAMIRMEDAIEGIPAKMLLQVHDELVFEVDEDAT 890 Score = 43.6 bits (101), Expect = 0.100, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Query: 602 VQAISRDILCEGMKNATKNGYDI----VLTVHDEIVSETPDTPYFSV 644 +Q + DI+ M I +L VHDE+V E + ++ Sbjct: 847 IQGTAADIIRRAMIRMEDAIEGIPAKMLLQVHDELVFEVDEDATDTL 893 >gi|190149819|ref|YP_001968344.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263139|ref|ZP_07544760.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914950|gb|ACE61202.1| DNA polymerase I (POL I) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871501|gb|EFN03224.1| hypothetical protein appser13_5610 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 957 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 99/560 (17%), Positives = 191/560 (34%), Gaps = 99/560 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L + V + N ++ +F G+ + + T + + T L Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + H T E GK F K +ID +Y D + T Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVT 534 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P ++ E L + I G ID + +L I Q + Sbjct: 535 MKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAE 594 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G K+V AD + IE R++A +A Sbjct: 713 ------------------------NEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLA 748 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808 Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488 + ++++ Q + F + +S + + Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKA 868 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + GTA +++K A + + E ++Q + V V Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919 Query: 549 LVMRRHKRDVHIVLPSSRRL 568 ++ + + + + + +L Sbjct: 920 ELVEHYSQLIKAEMEKAIQL 939 >gi|303252143|ref|ZP_07338311.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247479|ref|ZP_07529524.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648926|gb|EFL79114.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855982|gb|EFM88140.1| hypothetical protein appser2_4750 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 957 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 99/560 (17%), Positives = 191/560 (34%), Gaps = 99/560 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L + V + N ++ +F G+ + + T + + T L Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + H T E GK F K +ID +Y D + T Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVT 534 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P ++ E L + I G ID + +L I Q + Sbjct: 535 MKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLSE 594 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G K+V AD + IE R++A +A Sbjct: 713 ------------------------NEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLA 748 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808 Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488 + ++++ Q + F + +S + + Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKA 868 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + GTA +++K A + + E ++Q + V V Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919 Query: 549 LVMRRHKRDVHIVLPSSRRL 568 ++ + + + + + +L Sbjct: 920 ELVEHYSQLIKAEMEKAIQL 939 >gi|271502639|ref|YP_003335665.1| DNA polymerase I [Dickeya dadantii Ech586] gi|270346194|gb|ACZ78959.1| DNA polymerase I [Dickeya dadantii Ech586] Length = 929 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 96/576 (16%), Positives = 195/576 (33%), Gaps = 104/576 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + D P +L ++ + + L L +E + + N F++ + + GID Sbjct: 381 AAYLPLGHDYLDAPTQL----DRDTVLAQLKPLLENEAIGKIGQNLKFDKGVMARY-GID 435 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + + L+ + +H T E GK F + ++ Sbjct: 436 LRGIVF-DTMLESYVLDSVAGRHDMDSLSERYLQHKTITFEEIAGKGKNQLTFNQIPLEQ 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 Y D + T L + L + + L + Sbjct: 495 AAV----------------YAAEDADVTLRLHETLWAKLEPQQELCQVFKNIDMPLVPVL 538 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ID ++ + + + Q +L+ +L + L L+ + Sbjct: 539 SRMERTGVLIDTTILAEHSQELTQRLAELEVRAHELAGEAFNLA-SPKQLGAILYEKLQL 597 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLR 306 ++ + S + + +LA D L +L + KL + L + ++ + Sbjct: 598 PVIKKTPKGAPST-NEEVLAELALDHPLPKLILEHRELAKLKSTYTDKLPQMINPLTKRV 656 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + TGR S QN+P +R Sbjct: 657 HTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNEEGRRIRQ 692 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 IA G +++ AD + IE R++A ++ + +KAF++G DI+ T A+ F P+DKV+ Sbjct: 693 AFIAPQGYQILAADYSQIELRIMAHLSRDAGLLKAFSDGLDIHRATAAEVFGLPLDKVTT 752 Query: 427 EQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTSTF 472 EQR K + L Y A+ + + +Q++ + + + Sbjct: 753 EQRRSAKAINFGLIYGMSAFGLSRQLGIARNEAQKYMNLYFERYPGVQEYMERTRQQAAD 812 Query: 473 EDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ------ 515 + + S + + A+ + GTA +++KKA A Sbjct: 813 QGYVSTLDGRRLYLPDIHSRNAMSRKAAERAAINAPMQGTAADIIKKAMIAIDDWLQQEK 872 Query: 516 ----GVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 ++Q+ +L V + S R + Sbjct: 873 PLATMLMQVHDELVFEVHHSVLDEVSAKIRNLMEGC 908 >gi|255020063|ref|ZP_05292135.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] gi|254970490|gb|EET27980.1| DNA polymerase I [Acidithiobacillus caldus ATCC 51756] Length = 894 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 107/608 (17%), Positives = 201/608 (33%), Gaps = 121/608 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP------VKLWDRTEQSAMPS 55 ++ ID ET S P A + + AW + V L R E +P Sbjct: 315 ERVAIDTETSSLDP----------HAAELVGFSLAWFEGDRTRAVYVPLGHR-EGKQIPR 363 Query: 56 DLLQYL-----RDETVMCVAHNSLFERIL-FKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 D+ L D + +A N+ F+ + + + L + T + + ++ Sbjct: 364 DVALALLGPWLEDGSKAKLAQNAKFDWQIFWAQGLRPRGLA---RDTLLESYVLDSTAAH 420 Query: 110 KNACLALNFSEHL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 LA + +H ++ F I S Y Sbjct: 421 DLDSLAERYLQHRNISYAELTGKGRQARSFAAVDIASA----------------TAYAAE 464 Query: 166 DVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D E + ++ P D E L + + G RID+D++ +L E + Sbjct: 465 DAEVCLRVDAQMWPQIRRHEGLARVFRDIEMPLVEVLARMEWAGVRIDVDVLKRLSEELD 524 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 ++ + + ++ LF G+ ++ + G S + + +LA Sbjct: 525 TRMATVESEAFAAAGQRF-NLNSPKQIQTILFDKMGLPVLKKTPGGQPST-NEDVLAELA 582 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 K L RL + KL + L + + GR+ + TGR S Q Sbjct: 583 KQADLPRLILDYRGLAKLKNTYADALPQMIQERTGRVHTHY-HQAVAATGRLSSSDPNLQ 641 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + +R +A G L+ AD + IE R+ Sbjct: 642 NIPVRS------------------------DLGRRIRQAFVAEPGHLLISADYSQIELRI 677 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 +A ++G+ +AFA G DI+ T A+ F P+++V+ EQR K + L Y G Sbjct: 678 MAHLSGDAGLRQAFARGLDIHRATAAEVFAIPLEQVTPEQRRAAKAINFGLIYGQTPYGL 737 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483 A+ ++++ + + + + S + Sbjct: 738 AQQLGVGQGEAKAYMERYFERYPGVREYMENTRRLARQQGYVETLFGRRLYLPEIRSQNP 797 Query: 484 WMQDQYPEFAVKDKLIGTACELVK------KAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 ++ A+ + GTA +L+K AW ++ + + V E Sbjct: 798 ARRNYAERAAINAPMQGTAADLIKLAMIAVDAWLLAQTDHGRMLLQVHDELILEVPEKAV 857 Query: 538 ISARRVAN 545 +A ++ Sbjct: 858 DAACQMLR 865 Score = 41.3 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 20/135 (14%) Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + +G A E V R ++ ++ RRL +++ Sbjct: 743 VGQGEAKAYMERYFERYPGVREYMENTRRLARQQGYVETLFGRRLYLPEIRSQNP----- 797 Query: 584 TSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSET 636 R Y + N +Q + D++ M + ++L VHDE++ E Sbjct: 798 -----ARRNYAERAAINAPMQGTAADLIKLAMIAVDAWLLAQTDHGRMLLQVHDELILEV 852 Query: 637 PDTPYFSVGTLCSLM 651 P+ V C ++ Sbjct: 853 PEKA---VDAACQML 864 >gi|307256528|ref|ZP_07538309.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864938|gb|EFM96840.1| hypothetical protein appser10_5330 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 957 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 99/560 (17%), Positives = 191/560 (34%), Gaps = 99/560 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L + V + N ++ +F G+ + + T + + T L Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + H T E GK F K +ID +Y D + T Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SKYAAEDADVT 534 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P ++ E L + I G ID + +L I Q + Sbjct: 535 MKLHQVLTPELDKTPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAE 594 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653 Query: 280 NRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K+V AD + IE R++A +A Sbjct: 713 ------------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLA 748 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808 Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488 + ++++ Q + F + +S + + Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKA 868 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + GTA +++K A + + E ++Q + V V Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919 Query: 549 LVMRRHKRDVHIVLPSSRRL 568 ++ + + + + + +L Sbjct: 920 ELVEHYSQLIKAEMEKAIQL 939 >gi|17546949|ref|NP_520351.1| DNA polymerase I [Ralstonia solanacearum GMI1000] gi|17429250|emb|CAD15937.1| probable dna polymeraseIprotein [Ralstonia solanacearum GMI1000] Length = 946 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 108/589 (18%), Positives = 192/589 (32%), Gaps = 96/589 (16%) Query: 6 IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQY 60 ID ET S P+ VG+ E A V D + A+ + + + Sbjct: 360 IDTETTSIDPMLAQLVGLSLSVEPGQACYIPVAHRGPDVSGLDAAGQLSREAVLARMKPW 419 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D V + ++ +F GI + T + + + LA Sbjct: 420 LEDAARKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRNHGMDALAERVLH 477 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E C +D + EY D + T L + L P Sbjct: 478 LKTITYE------EVCGKGASQIGFDEVPLD------RATEYAAEDADITLRLHRALYPK 525 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++ Q + G ID + + + + Q +L++ L Sbjct: 526 VAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLELEQQAYALAG 585 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + F + ++ + S + +LA+D L +L + Sbjct: 586 QPF-NLNSPKQIGEIFFTQLKLPVIKKTASGAPST-DEEVLQKLAEDYPLPKLLLDFRGL 643 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 644 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 693 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G +V AD + IE R++A ++ ++ ++AF Sbjct: 694 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFR 738 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+D++ T A+ F +V+ EQR KV+ L Y A L + Sbjct: 739 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 798 Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498 ++ + + D + +H LW+ + A+ + Sbjct: 799 DRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 858 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 GTA +L+K + A +Q W D G + G + R+V V Sbjct: 859 QGTAADLIKLSMLA-----VQDWLD---GSPSAGKPGAPMRTRQVMQVH 899 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 32/103 (31%), Gaps = 24/103 (23%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 RRL D+ G A R +Q + D++ M Sbjct: 830 GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMLAVQDWLDGS 880 Query: 619 ----KNGYDI----VLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 K G + V+ VHDE+V E P V L LM Sbjct: 881 PSAGKPGAPMRTRQVMQVHDELVLEVPQEELSLVRERLPELMC 923 >gi|253317126|ref|ZP_04840339.1| phage encoded DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 284 Score = 291 bits (745), Expect = 2e-76, Method: Composition-based stats. Identities = 80/282 (28%), Positives = 124/282 (43%), Gaps = 17/282 (6%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAY--AEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + IDIET S + K G + Y AE I + AY+ D + D T+ P Sbjct: 1 MKFMNIDIETYSSNDISKCGAYKYTEAEDFEILIIAYSIDGGAISAIDMTKVDNEPFHAD 60 Query: 55 -SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V A N+ FER K +P + WICT V + GLP+SL Sbjct: 61 YETFKIALFDPAVKKYAFNANFERTCLAKHFNKQMPPEEWICTMVNSMRIGLPASLDKVG 120 Query: 114 LALNFSEHLTKMEEGKALIARF---CKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEA 169 L K + GK LI F CK + + H ++ WQ F +YC RDVE Sbjct: 121 EVLRLQSQ--KDKAGKNLIRYFSIPCKPTKVNGGRTRNLPEHDLEKWQQFIDYCIRDVEV 178 Query: 170 TRELFKRL--IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++ P++ E+ W+ DQ INDRG ++ L+L L Q +++L + + Sbjct: 179 EMAIANKIKDFPVTAIEQTYWVFDQHINDRGIKLSKSLMLGANVLDKQSKEELLKQAKHI 238 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 T + + L +L G+D+ ++ + T++ L + Sbjct: 239 TG--LENPNSPTQLLAWLKDEQGLDIPNLQKKTVQEYLKEAT 278 >gi|268592231|ref|ZP_06126452.1| DNA polymerase I [Providencia rettgeri DSM 1131] gi|291312280|gb|EFE52733.1| DNA polymerase I [Providencia rettgeri DSM 1131] Length = 930 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 91/571 (15%), Positives = 187/571 (32%), Gaps = 94/571 (16%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + D PV+L + + L E ++ + N ++ + + Sbjct: 379 HAAYLPLGHDYLDAPVQLP----LEEVLELMKPILESENILKIGQNLKYDAEVLENY--- 431 Query: 87 DIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 DI K T + + + + + HL IA K + Sbjct: 432 DIELKGIGYDTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTF--- 488 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTI 194 + A + Y D + T L + L P + E L + + Sbjct: 489 ------NQIALEEAANYAAEDADVTLLLHQALYPQLEAEPKLNHIFQNIEMPLVPVLVRM 542 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 +G ID +++ ++I +L+++ +L + L+ LF + ++ Sbjct: 543 ERKGVLIDANVLAAQSKVITARLAELEKEAFELAGEEFNLA-SPKQLQTILFEKLQLPVI 601 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTL 309 + S + + +LA + L +L ++ KL + L ++ + T Sbjct: 602 KKTPSGAAST-NEEVLEELALNHALPKLLLEHRSLAKLKSTYTDKLPLMINPRTQRVHTS 660 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P + +R I Sbjct: 661 YHQAVTATGRLSSRDPNLQNIPVRT------------------------EEGRRIRQAFI 696 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P+++V+ +QR Sbjct: 697 AREGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLEQVTSDQR 756 Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ-------- 477 K + L Y A+ + + + + + + Sbjct: 757 RSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQGY 816 Query: 478 -------------AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH---------- 514 +S + + A+ + GTA +++KKA A Sbjct: 817 VETLEGRRLYLADIKSSNGMRRKAAEREAINAPMQGTAADIIKKAMIAVDNWLQTEKPHA 876 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 ++Q+ +L E + + Sbjct: 877 DMLMQVHDELVFEVKESELERVQAQVQSLME 907 >gi|260581683|ref|ZP_05849480.1| DNA polymerase I [Haemophilus influenzae NT127] gi|260095276|gb|EEW79167.1| DNA polymerase I [Haemophilus influenzae NT127] Length = 930 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 104/597 (17%), Positives = 197/597 (32%), Gaps = 108/597 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 + + L + + + N F+ +F + GI++ + T +L+ T Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LA + H T E A + + + + P + EY D + T Sbjct: 462 DDLAKRYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTM 509 Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L E L + + G ID D + IA L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ L + T L+ LF G+ ++ + S + + +L+ L Sbjct: 570 EKQAYALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELP 627 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +V AD + IE R++A ++G Sbjct: 686 -----------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + I AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGI 782 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + Q S F S + + Sbjct: 783 SRADAQKYMNLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGA 842 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K+A + + ++ + + V+ R Sbjct: 843 ERVAINAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEKVAFFR 899 >gi|254463214|ref|ZP_05076630.1| DNA polymerase I superfamily [Rhodobacterales bacterium HTCC2083] gi|206679803|gb|EDZ44290.1| DNA polymerase I superfamily [Rhodobacteraceae bacterium HTCC2083] Length = 945 Score = 291 bits (744), Expect = 3e-76, Method: Composition-based stats. Identities = 98/537 (18%), Positives = 185/537 (34%), Gaps = 93/537 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D +VM + N ++ +F + GI+I A+ GL + +A Sbjct: 423 LKPLLEDPSVMKIGQNMKYDAKIFARY-GIEIAPIDDTMLISYAQHAGLHNHGMDALSER 481 Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + GK+ I F + ID Y D + T Sbjct: 482 YLGHTPIPIKPLLGTGKSAIT-FDRVPIDHA----------------TPYAAEDADITLR 524 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L++ L P ER L + + G ++D D++ ++ AQ+ L+ Sbjct: 525 LWQHLKPTLHSARTTRVYETMERPLVPVLAQMERYGIKVDRDVLSRMSNAFAQKMAGLEA 584 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +I ++ + + LF G++ K + LA + + R Sbjct: 585 EIHEMAGHSF-NVGSPAQVGEILFDEMGLEGGKKG-KNGKYSTGADILEDLATEHEMPRR 642 Query: 283 ASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L + ++ D GR+ + GAS TGR + QN+P + Sbjct: 643 ILDWRQLSKLKSTYTDALQDHINPDTGRVHTSYSIAGAS-TGRLASTDPNLQNIPIRS-- 699 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA GK LV D + IE R+LA +AG D Sbjct: 700 ----------------------EEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGID 737 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 +AF +G DI+ T ++ F+ P+D+++ + R K + + Y G A+ + Sbjct: 738 SLKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGFGLARNLRIPR 797 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEF 492 S + ++ + + A + + Sbjct: 798 SEAQGFIDRYFDRFPGIKEYMNDTTAFAKANDRVETLFGRVIHTPNINAKGPQAGFAKRA 857 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGSISARRVAN 545 A+ + GTA +++++A + ++ + + V++ G + A Sbjct: 858 AINAPIQGTAADIIRRAMIRMPDAIKDQPAKMLLQVHDELLFEVEKDGVDQLIKTAK 914 Score = 37.4 bits (85), Expect = 8.5, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 73/240 (30%), Gaps = 33/240 (13%) Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 A + +LQ + + AE + + Y + ++ + Sbjct: 678 AGASTGRLASTDPNLQNIPIRSEEGRRIREAFIAEEGKVLVALDYSQIELRILAHVAGID 737 Query: 505 LVKKAWRAKHQGVLQLWKD-----LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 +K+A+R H + L E A V ++ +I+ + + + R+ R Sbjct: 738 SLKQAFRDGHDIHAMTASEMFDVPLDEMTADVRRQAKAINFGVIYGISGFGLARNLRIPR 797 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTAT---SQLMRERTYGGKLTE--NI------------- 601 + G Y+N T R T G++ NI Sbjct: 798 SEAQGFIDRYFDRFPGIKEYMNDTTAFAKANDRVETLFGRVIHTPNINAKGPQAGFAKRA 857 Query: 602 -----VQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 +Q + DI+ M ++L VHDE++ E + T +M Sbjct: 858 AINAPIQGTAADIIRRAMIRMPDAIKDQPAKMLLQVHDELLFEVEKDGVDQLIKTAKDIM 917 >gi|227327116|ref|ZP_03831140.1| DNA polymerase I [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 929 Score = 291 bits (744), Expect = 4e-76, Method: Composition-based stats. Identities = 107/577 (18%), Positives = 198/577 (34%), Gaps = 106/577 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L DRT+ A+ L DE ++ + N F++ + ++ D Sbjct: 381 AAYLPLAHDYLDAPEQL-DRTKVLAL---FKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433 Query: 88 IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I + ++L + LA + H T E GK F + ++ Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLSHKTITFEEIAGKGKNQLTFNQIAL- 492 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI----PLSD-------GERDLWLL 190 + G Y D + T L ++L P +D + L + Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQKLWGKLQPHTDLCQVFQTIDMPLVPV 537 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID ++ + + + +L+ +L S T L+ L+ Sbjct: 538 LSRIERTGVLIDPAILAEHSKRLTIRLAELETQAYELAGEEFNLS-STKQLQGILYEKQK 596 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305 + ++ + S + + +LA L +L + KL + L ++ + Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALGYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +R Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G +V AD + IE R++A ++G+ + AFANG DI+ T ++ F T +DKV+ Sbjct: 692 QAFIAPQGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGTALDKVT 751 Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471 EQR K + L Y A + + + +Q + + + + Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811 Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------- 512 + S + + A+ + GTA +++KKA A Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMIAIDDWLRKD 871 Query: 513 --KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 K + ++Q+ +L V E + + Sbjct: 872 TPKVKMIMQVHDELVFEIHDSVIEESISKIKVLMEGC 908 Score = 38.9 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 16/94 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNAT 618 RRL D+ + A R +Q + DI+ + M Sbjct: 821 GRRLYLPDIHSRNAM---ARKGAERAAINAP------MQGTAADIIKKAMIAIDDWLRKD 871 Query: 619 KNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 +++ VHDE+V E D+ S+ + LM Sbjct: 872 TPKVKMIMQVHDELVFEIHDSVIEESISKIKVLM 905 >gi|313200166|ref|YP_004038824.1| DNA polymerase i [Methylovorus sp. MP688] gi|312439482|gb|ADQ83588.1| DNA polymerase I [Methylovorus sp. MP688] Length = 918 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 109/584 (18%), Positives = 192/584 (32%), Gaps = 121/584 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S PL K G AY + + P +L +A + Sbjct: 346 DTETTSLDPLTAKLVGMSFSIKAGEAAY------LPLTHDYPGAPDQLP----FAATLAR 395 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + V N +++ + GI + T + + + LA+ Sbjct: 396 IKPLLENPAIKKVGQNLKYDKHVLANH-GIVLNGIA-HDTLLQSYVLESHRTHGMDDLAM 453 Query: 117 N-FSEHLTKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 E+ GK F + ++ + EY D + T + Sbjct: 454 RHLGVQTITYEQVAGKGAKQVSFSQVAL----------------EQASEYAAEDADVTLQ 497 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L P E + + TI G ID D++ + I Q+ L+ Sbjct: 498 LHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALE 557 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + +L + L+ LF GI + + S + +LA D L + Sbjct: 558 QQAYELAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGTPST-DEDVLQELALDYPLPK 615 Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 616 VLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYS-QAVAVTGRLSSSDPNLQNIPVRT- 673 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G +V AD + IE R++A ++ + Sbjct: 674 -----------------------AEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 D + AFA GEDI+ T A+ F D VS EQR KV+ L Y A+ Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIE 770 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQ----------YP 490 ++++ + + + LW+ + Sbjct: 771 RQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAE 830 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + GTA +L+K A A + ++Q+ +L Sbjct: 831 RAAINAPMQGTAADLIKLAMIAVQGWLESEKLATKLIMQVHDEL 874 Score = 45.5 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655 Q + D++ M K +++ VHDE+V E PD V L LM Sbjct: 839 QGTAADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDV- 897 Query: 656 SWAK-GLPLKAE 666 AK +PL AE Sbjct: 898 --AKLDVPLLAE 907 >gi|157147357|ref|YP_001454676.1| DNA polymerase I [Citrobacter koseri ATCC BAA-895] gi|157084562|gb|ABV14240.1| hypothetical protein CKO_03151 [Citrobacter koseri ATCC BAA-895] Length = 928 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 102/568 (17%), Positives = 192/568 (33%), Gaps = 108/568 (19%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 GV AY A+ + D P ++ + L L DE V N ++R + Sbjct: 378 GVAAY------VPVAHDYLDAPDQI----SRERALELLKPLLEDEKARKVGQNLKYDRGV 427 Query: 80 FKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE---GKALIAR- 134 + GI++ + T + + + L+ + +H T E GK Sbjct: 428 LQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLSERWLKHKTITFEEIAGKGKNQLT 485 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDG 183 F + ++ + G Y D + T +L ++ P + Sbjct: 486 FNQIAL----------------EEAGRYAAEDADVTLQLHLKMWPELQQYKGPLNVFENI 529 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + G +ID ++ K E I +L++ ++ S T L+ Sbjct: 530 EMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHEIAGEEFNLS-STKQLQT 588 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298 LF GI + + G S S + +LA D L ++ + KL + L Sbjct: 589 ILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKSTYTDKLPLM 647 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 ++ GR+ + + TGR S QN+P Sbjct: 648 INPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------------VR 682 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R IA + AD + IE R++A ++ + + AFA G+DI+ T A+ F Sbjct: 683 NEEGRRIRQAFIAPQDYVIASADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAEVF 742 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P++ V+ EQR K + L Y A+ + + + + Sbjct: 743 GLPLESVTAEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGVLEYM 802 Query: 474 DWEQAESHHLWMQDQYP---------------------EFAVKDKLIGTACELVKKA--- 509 + +A++ + A+ + GTA +++K+A Sbjct: 803 ERTRAQAKERGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADIIKRAMIA 862 Query: 510 ---WRAKHQGVLQLWKDLTEGFACVVQE 534 W Q +++ + + V + Sbjct: 863 VDKWLQDEQPRVRMIMQVHDELVFEVHK 890 Score = 38.2 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + +++ VHDE+V E V + LM Sbjct: 849 QGTAADIIKRAMIAVDKWLQDEQPRVRMIMQVHDELVFEVHKDDLDVVSKKIHQLM 904 >gi|307260958|ref|ZP_07542640.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869260|gb|EFN01055.1| hypothetical protein appser12_5250 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 957 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 99/559 (17%), Positives = 190/559 (33%), Gaps = 99/559 (17%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 +L L V + N ++ +F G+ + + T + + T LA Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDELA 491 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + H T E GK F K +ID + +Y D + T Sbjct: 492 DRYLGHKTIEFEEIAGKGKNQLTFDKIAID----------------IASQYAAEDADVTM 535 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P ++ E L + I G ID + +L I Q +L Sbjct: 536 KLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAEL 595 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 596 EQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVP 654 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 655 KLLMEHRGLSKLKSTYTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 712 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA+ G K+V AD + IE R++A +A Sbjct: 713 -----------------------NEEGRRIRQAFIANKGYKIVAADYSQIELRIMAHLAN 749 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 750 DEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGI 809 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + ++++ Q + F + +S + + Sbjct: 810 SRADAKKYMERYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKAA 869 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A+ + GTA +++K A + + E ++Q + V V Sbjct: 870 ERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKEE 920 Query: 550 VMRRHKRDVHIVLPSSRRL 568 ++ + + + + + +L Sbjct: 921 LVEHYSQLIKAEMEKAIQL 939 >gi|145632225|ref|ZP_01787960.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145634721|ref|ZP_01790429.1| DNA polymerase I [Haemophilus influenzae PittAA] gi|144987132|gb|EDJ93662.1| DNA polymerase I [Haemophilus influenzae 3655] gi|145267887|gb|EDK07883.1| DNA polymerase I [Haemophilus influenzae PittAA] Length = 935 Score = 290 bits (743), Expect = 4e-76, Method: Composition-based stats. Identities = 97/532 (18%), Positives = 186/532 (34%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 414 IKLILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 471 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P Q EY D + T +L + Sbjct: 472 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LQQATEYAAEDADVTMKLQQA 519 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 520 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 579 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 580 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 637 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 638 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 690 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 691 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 732 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A Sbjct: 733 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDA 792 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494 + + + +QQF ++++ + + + S + + A+ Sbjct: 793 QKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 852 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 853 NAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEKVAFFR 904 >gi|50118986|ref|YP_048153.1| DNA polymerase I [Pectobacterium atrosepticum SCRI1043] gi|49609512|emb|CAG72945.1| putative DNA polymerase I [Pectobacterium atrosepticum SCRI1043] Length = 929 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 100/560 (17%), Positives = 191/560 (34%), Gaps = 102/560 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L DR + A+ L DE ++ + N F++ + ++ D Sbjct: 381 AAYLPLAHDYLDAPEQL-DRAQVLAL---FKPLLEDEKLLKIGQNLKFDKGVMQRY---D 433 Query: 88 IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSID 141 I + ++L + LA + +H T E GK F + ++ Sbjct: 434 IDLRGIAFDTMLESYVLDSVAGRHDMDSLAERYLKHKTITFEEIAGKGKNQLTFNQIAL- 492 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLL 190 + G Y D + T L + L + L + Sbjct: 493 ---------------EQAGPYAAEDADVTLHLHQTLWGKLQPHADLCQVFQAIDMPLVPV 537 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID ++ + + + L+ +L + T L+ L+ Sbjct: 538 LSRIERTGVLIDPAILAEHSKELTTRLAGLETQAYELAGEEFNLA-STKQLQGILYEKQK 596 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRL 305 + ++ + S + + +LA D L +L + KL + L ++ + Sbjct: 597 LPILKKTPKGAPST-NEEVLAELALDYPLPKLILEYRGLAKLKSTYTDKLPLMINPATKR 655 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +R Sbjct: 656 VHTSYHQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIR 691 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IAS G +V AD + IE R++A ++G+ + AFANG DI+ T ++ F +DKV+ Sbjct: 692 QAFIASKGYSIVAADYSQIELRIMAHLSGDKGLLNAFANGLDIHRATASEVFGIALDKVT 751 Query: 426 KEQRAIGKVMELALGYQGGA--------------KVFKTMASHCGLDLQQFSQNVKSTST 471 EQR K + L Y A + + + +Q + + + + Sbjct: 752 SEQRRSAKAINFGLIYGMSAFGLSRQLNIPRSESQKYMNLYFERYPGVQDYMERTRQQAA 811 Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA------WRAKH 514 + S + + A+ + GTA +++KKA W K Sbjct: 812 EHGYVSTLDGRRLYLPDIHSRNAMARKGAERAAINAPMQGTAADIIKKAMISIDDWLQKD 871 Query: 515 QGVLQLWKDLTEGFACVVQE 534 ++++ + + + + Sbjct: 872 TPLVKMIMQVHDELVFEIHD 891 >gi|261344431|ref|ZP_05972075.1| DNA polymerase I [Providencia rustigianii DSM 4541] gi|282567335|gb|EFB72870.1| DNA polymerase I [Providencia rustigianii DSM 4541] Length = 934 Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 92/573 (16%), Positives = 189/573 (32%), Gaps = 94/573 (16%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 A A + + D PV+L + + + L +E + + N ++ + + Sbjct: 381 AGHAAYLPIGHDYLDAPVQL----SLDDVIAVMKPILENEKIGKIGQNLKYDAEVLENY- 435 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 GI++ + T + + + + + HL IA K + Sbjct: 436 GIELKGIAF-DTMLESYVLNSVAGMGRHDMDSLADRHLNHKTVSFEEIAGKGKKQLTF-- 492 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQT 193 + + Y D + T L + L P + E L + Sbjct: 493 -------NQIPLEQAANYAAEDADVTLLLHQALFPQLEEEPKLAHVFQNIEMPLVPVLVR 545 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + +G ID + ++I +L++ +L + L+ LF + + Sbjct: 546 MERKGVLIDAPTLAAQSKIITARLAELEKQAFELAGEEFNLA-SPKQLQTILFEKLQLPV 604 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRG 307 + + S + + +LA + L +L ++ KL + L ++ GR+ Sbjct: 605 IKKTPSGAAST-NEEVLEELALNHELPKLLLEHRSLAKLKSTYTDKLPLMINPKTGRVHT 663 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P + +R Sbjct: 664 SY-HQAVTATGRLSSRDPNLQNIPVRT------------------------EEGRRIRQA 698 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 IA G K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D+V+ + Sbjct: 699 FIARKGYKVMAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHKATAAEVFGVPLDQVTSD 758 Query: 428 QRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ------ 477 QR K + L Y A+ + + + + + + Sbjct: 759 QRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRLQASEQ 818 Query: 478 ---------------AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH-------- 514 +S + + A+ + GTA +++KKA A Sbjct: 819 GYVETLEGRRLYLADIKSSNGMRRKAAEREAINAPMQGTAADIIKKAMIAVDHWLQTEKP 878 Query: 515 --QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 ++Q+ +L E + + Sbjct: 879 EADMLMQVHDELVFEVKESELEKVQAKVQELME 911 >gi|270265261|ref|ZP_06193523.1| DNA polymerase I [Serratia odorifera 4Rx13] gi|270040895|gb|EFA13997.1| DNA polymerase I [Serratia odorifera 4Rx13] Length = 933 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 99/577 (17%), Positives = 195/577 (33%), Gaps = 98/577 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L +++ + L L DE + V N F+ L + D Sbjct: 384 AAYLPVAHDYLDAPAQL----DRAYVLETLKPLLEDEKALKVGQNLKFDMGLLARY---D 436 Query: 88 IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I + ++L + L+ + H T E I Sbjct: 437 ITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFE-----------EIAGKGK 485 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTI 194 N + + Y D + T +L + P ++ E L + I Sbjct: 486 KQLTFNQIAL-EQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNEIEMPLVPVLSHI 544 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G ID ++ + + +L+ +L + + T L+ L+ + ++ Sbjct: 545 ERTGVLIDQSILATHSIELTKRLAELEIQAHELAEEPFNLA-STKQLQAILYEKQKLPVL 603 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGT 308 + G S + + +LA D L ++ + KL + L ++ GR+ + Sbjct: 604 KKTPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPFSGRVHTS 662 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + TGR S QN+P +R Sbjct: 663 Y-HQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIRQAF 697 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G ++V AD + IE R++A ++ ++ +KAFA G+DI+ T A+ F +DKV+ EQ Sbjct: 698 IAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFAEGKDIHRATAAEVFGVQLDKVTGEQ 757 Query: 429 RAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAESHHL 483 R K + L Y A+ + + + E Q + Sbjct: 758 RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAAEQG 817 Query: 484 WM--------------------QDQYPEFAVKDKLIGTACELVKKAWRA-------KHQG 516 ++ + A+ + GTA +++K+A + + Sbjct: 818 YVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPMQGTAADIIKRAMIEVDAWLQGQDEP 877 Query: 517 VLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVMR 552 ++++ + + + E S++R+ + M Sbjct: 878 LVRMIMQVHDELVFEIHESVIEASSQRIRELMENSMT 914 >gi|218708173|ref|YP_002415794.1| DNA polymerase I [Vibrio splendidus LGP32] gi|218321192|emb|CAV17142.1| DNA polymerase I [Vibrio splendidus LGP32] Length = 933 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 107/570 (18%), Positives = 198/570 (34%), Gaps = 101/570 (17%) Query: 17 PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFE 76 + GV AY A+ + D P +L ++ + L L D+ V N ++ Sbjct: 379 TEEGVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDAQAKVGQNLKYD 428 Query: 77 RILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + GI++ + T + + N + LAL F +H E Sbjct: 429 MSVLARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQ------- 479 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGE 184 I N ++ + Y D + T L RL+ + E Sbjct: 480 ----IAGKGKKQLTFNQIELGEA-SPYAAEDADVTLRLHNRLMENIEQDEKLKTIYGEIE 534 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + I G ID L+ + IA +L++ ++ + + L+ Sbjct: 535 VPLIPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIAEQEF-NMNSPKQLQAI 593 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV 299 LF G+ ++ + S + + +LA D L +L + KL + L + + Sbjct: 594 LFEKMGLPVIKKTPSGAPST-NEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMI 652 Query: 300 S-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 653 NAETGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------N 687 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ Sbjct: 688 EEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIG 747 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFE 473 I+ V+ EQR K + L Y AK + + + E Sbjct: 748 VDIESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYMDTYFERYPGVMQYME 807 Query: 474 DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW--- 510 D A S +++ Y A+ + GTA +++KKA Sbjct: 808 DTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLV 867 Query: 511 ----RAKHQGVLQLWKDLTEGFACVVQEGG 536 +A+ G ++L + + V+E Sbjct: 868 DEWIQAEGDGRVKLLMQVHDELVFEVEESA 897 >gi|253998100|ref|YP_003050163.1| DNA polymerase I [Methylovorus sp. SIP3-4] gi|253984779|gb|ACT49636.1| DNA polymerase I [Methylovorus sp. SIP3-4] Length = 918 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 109/584 (18%), Positives = 192/584 (32%), Gaps = 121/584 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S PL K G AY + + P +L +A + Sbjct: 346 DTETTSLDPLTAKLVGMSFSIKAGEAAY------LPLTHDYPGAPDQLP----FAATLAR 395 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + V N +++ + GI + T + + + LA+ Sbjct: 396 IKPLLENPAIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRTHGMDDLAM 453 Query: 117 N-FSEHLTKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 E+ GK F + ++ + EY D + T + Sbjct: 454 RHLGVQTITYEQVAGKGAKQVSFSQVAL----------------EQASEYAAEDADVTLQ 497 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L P E + + TI G ID D++ + I Q+ L+ Sbjct: 498 LHENLYPQVAEDAKLEFVYRQIEMPVLDILFTIERNGVLIDNDMLNRQSHEIGQKLMALE 557 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + +L + L+ LF GI + + S + +LA D L + Sbjct: 558 QQAYELAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGTPST-DEDVLQELALDYPLPK 615 Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 616 VLLEYRGLAKLKSTYTDKLPRMINPTTGRVHTSYS-QAVAVTGRLSSSDPNLQNIPVRT- 673 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G +V AD + IE R++A ++ + Sbjct: 674 -----------------------AEGRRIREAFVAPAGGHIVSADYSQIELRIMAHLSQD 710 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 D + AFA GEDI+ T A+ F D VS EQR KV+ L Y A+ Sbjct: 711 DGLLTAFAAGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLAQNLGIE 770 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQ----------YP 490 ++++ + + + LW+ + Sbjct: 771 RQAAQNYIERYFTRYPGVRDYMQNTRERAKAQGYVETFFGRRLWVPEINSPNGMRRAGAE 830 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + GTA +L+K A A + ++Q+ +L Sbjct: 831 RAAINAPMQGTAADLIKLAMIAVQGWLESEKLATKLIMQVHDEL 874 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 11/72 (15%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655 Q + D++ M K +++ VHDE+V E PD V L LM Sbjct: 839 QGTAADLIKLAMIAVQGWLESEKLATKLIMQVHDELVLEVPDNELALVKEKLPQLMQDV- 897 Query: 656 SWAK-GLPLKAE 666 AK +PL AE Sbjct: 898 --AKLDVPLLAE 907 >gi|86146596|ref|ZP_01064918.1| DNA polymerase I [Vibrio sp. MED222] gi|85835653|gb|EAQ53789.1| DNA polymerase I [Vibrio sp. MED222] Length = 933 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 107/567 (18%), Positives = 197/567 (34%), Gaps = 101/567 (17%) Query: 20 GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 GV AY A+ + D P +L ++ + L L D+ V N ++ + Sbjct: 382 GVAAY------VPVAHDYLDAPQQL----DRDWVLEQLKPILEDDAQAKVGQNLKYDMSV 431 Query: 80 FKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++ + T + + N + LAL F +H E Sbjct: 432 LARY-GIEMKGIK-HDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQ---------- 479 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDL 187 I N ++ + Y D + T L RL+ + E L Sbjct: 480 -IAGKGKKQLTFNQIELGEA-SPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPL 537 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + I G ID L+ + IA +L++ ++ + + L+ LF Sbjct: 538 IPVMSRIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIAEQEF-NMNSPKQLQAILFE 596 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-S 301 G+ ++ + S + + +LA D L +L + KL + L + ++ Sbjct: 597 KMGLPVIKKTPSGAPST-NEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMINAE 655 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 GR+ + + TGR S QN+P + Sbjct: 656 TGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEG 690 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ T A+ I Sbjct: 691 RRIRQAFVAQHGWKILAVDYSQIELRIMAHLSGDKALLEAFQQGKDIHAATAAEIIGVDI 750 Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWE 476 + V+ EQR K + L Y AK + + + ED Sbjct: 751 ESVTTEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQHYMDTYFERYPGVMQYMEDTR 810 Query: 477 QAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW------ 510 A S +++ Y A+ + GTA +++KKA Sbjct: 811 SAASEQGFVETIYGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDEW 870 Query: 511 -RAKHQGVLQLWKDLTEGFACVVQEGG 536 +A+ G ++L + + V+E Sbjct: 871 IQAEGDGRVKLLMQVHDELVFEVEESA 897 >gi|304309855|ref|YP_003809453.1| DNA polymerase A [gamma proteobacterium HdN1] gi|301795588|emb|CBL43787.1| DNA polymerase A [gamma proteobacterium HdN1] Length = 920 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 99/605 (16%), Positives = 190/605 (31%), Gaps = 122/605 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD--- 56 +D ET S Y + A + +++ +P D Sbjct: 345 SVDTETTSLN---------YMD-AELVGISFSLQAGEAAYVPVGHTAIGTPEQLPLDYVL 394 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNAC 113 L L ET + N ++ + + GI + R+ T + + + Sbjct: 395 NALKPILEAETPAKIGQNLKYDMNVLARY-GITLSGVRF-DTMLESYVLDAAATRHDMDS 452 Query: 114 LALNFSEHLT---KMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LAL + T + GK F + + Y D + Sbjct: 453 LALKYLGQKTIAFEDVAGKGAKQITFDQVPLLQAAT----------------YAAEDADV 496 Query: 170 TRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L + L P + E L + + G RID+ + + + + Sbjct: 497 TLKLHQALWPRVQKTPTLTKVFQEIEMPLVGVLSRMEREGARIDVAALKQQSRQLGERMA 556 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L+ + L + L L+ + ++ + S S + LA D Sbjct: 557 ELEAEAHTLAGQPFNLA-SPKQLGEILYDQLQLPILKKTPKGAPST-DESVLQDLAHDYE 614 Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L ++ KL + L E V+ GR+ + + TGR S QN+P Sbjct: 615 LPKVLLEYRGCAKLKSTYTDKLPELVNPRTGRIHTSY-HQAVASTGRLSSSDPNLQNIPI 673 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + S +R IA G +V AD + IE R++A + Sbjct: 674 RNES------------------------GRKIRQAFIAEPGFTMVAADYSQIELRIMAHL 709 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448 + ++ I AFA G DI+ T A+ P++ V+ + R K + L Y A+ Sbjct: 710 SDDESLIDAFARGLDIHRATAAEVMGVPLEDVTSDMRRSAKAVNFGLIYGMSAFGLARQL 769 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQD 487 + ++ + + + ++H + Sbjct: 770 GISREQAQAYMDRYFHRYPGVLRYMEDIRKQAHDQGYVETLFGRRLYLPEVRAASKMRRQ 829 Query: 488 QYPEFAVKDKLIGTACELVKKAWR----------AKHQGVLQLWKDLTEGFACVVQEGGS 537 A+ + G+A +++K+A AK + ++Q+ +L V Sbjct: 830 AAERVAINAPMQGSAADIIKRAMIDIDTWLRTQPAKIRMIMQVHDELVFEVPNDVVPDAI 889 Query: 538 ISARR 542 ++ Sbjct: 890 EQIQK 894 >gi|254497331|ref|ZP_05110136.1| DNA polymerase I [Legionella drancourtii LLAP12] gi|254353443|gb|EET12173.1| DNA polymerase I [Legionella drancourtii LLAP12] Length = 859 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 109/604 (18%), Positives = 211/604 (34%), Gaps = 119/604 (19%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQS--AMPSDLLQY- 60 +D ET S + A I + A +++ T+ S + ++ Sbjct: 288 LDTETTS-LDIM---------AAEIVGISLAIEEKKAAYIPFIHTDGSVQLLRDEVFAAI 337 Query: 61 ---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLAL 116 L + + + N ++ + K GI + + T + + L+L Sbjct: 338 KPILENPAIKKIGQNIKYDYSVLKNH-GIHLQGLAY-DTMLESYILNSNAGRHDMDTLSL 395 Query: 117 NFSEHLTKMEE---GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H T E GK RF + +D Y D + T + Sbjct: 396 KYLGHKTITFEDIAGKGAKQLRFDQIPVDKASV----------------YAAEDADITLQ 439 Query: 173 LFKRLIPL---------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L +L P+ +D E L + + RG ID + + + + + + K L+E+ Sbjct: 440 LHHKLYPMMAESLHSVFNDIEMPLIPVLAEMELRGVLIDANTLEQHGKRLKERIKILEEE 499 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++L S L+ LF I ++ + T + + S + +LA D L + Sbjct: 500 AIQLAGKPFNLS-SPKQLQEILFNEQKIPVIAKTP-TGQPSTAESVLQELAFDYRLAAVI 557 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 558 LEHRGLTKLVSTYIDALPKKINAETGRVHTSYN-QAVAATGRLSSSEPNLQNIPIR---- 612 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ IA + ++ AD + IE R++A ++ ++ Sbjct: 613 --------------------NEEGRLIRTAFIAPPEQVILAADYSQIELRIMAHLSQDEN 652 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFANG DI+ T A+ F+ ++V+ EQR K + L Y AK Sbjct: 653 LLTAFANGWDIHTATAAEIFHIAREEVTSEQRRRAKAVNFGLIYGMSAFGLAKQIGVERQ 712 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492 + + Q + + + ++H +L Q Sbjct: 713 DAQNYIDTYFQRYPKVLEYMNRTRQQAHEQGYVETLCGRRLYLPEINTRNLMRQKAAERT 772 Query: 493 AVKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++KKA + ++Q+ +L A E ++ R Sbjct: 773 AINAPMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFEVASQEIEASTVKIR 832 Query: 542 RVAN 545 ++ Sbjct: 833 QLME 836 Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 42/122 (34%), Gaps = 17/122 (13%) Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 +V ++ ++ RRL ++ T LMR++ Sbjct: 726 PKVLEYMNRTRQQAHEQGYVETLCGRRLYLPEI---------NTRNLMRQKAAERTAINA 776 Query: 601 IVQAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMT 652 +Q + DI+ + M N K +++ VHDE+V E S + LM Sbjct: 777 PMQGTAADIIKKAMINIAKWQNAQATPPARMIMQVHDELVFEVASQEIEASTVKIRQLME 836 Query: 653 KN 654 + Sbjct: 837 QA 838 >gi|148826499|ref|YP_001291252.1| DNA polymerase I [Haemophilus influenzae PittEE] gi|148716659|gb|ABQ98869.1| DNA polymerase I [Haemophilus influenzae PittEE] Length = 930 Score = 290 bits (742), Expect = 5e-76, Method: Composition-based stats. Identities = 104/597 (17%), Positives = 199/597 (33%), Gaps = 108/597 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 + + L + + + N F+ +F + GI++ + T +L+ T Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LA + H T E A + + + + P + EY D + T Sbjct: 462 DDLAKRYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTM 509 Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L E L + + G ID D + IA L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ L + T L+ LF G+ ++ + S + + +L+ L Sbjct: 570 EKQAYALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELP 627 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +V AD + IE R++A ++G Sbjct: 686 -----------------------NEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + I AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A + Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGI 782 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQY 489 + + Q S F +A++ + + Sbjct: 783 SRLDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGA 842 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K+A + + ++ + + V+ R Sbjct: 843 ERVAINAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899 >gi|319897650|ref|YP_004135847.1| DNA polymerase i [Haemophilus influenzae F3031] gi|317433156|emb|CBY81530.1| DNA polymerase I [Haemophilus influenzae F3031] Length = 935 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 96/532 (18%), Positives = 182/532 (34%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 414 IKPILENPDIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 471 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 472 RYLGHETIAFESIAGKGK-GQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 519 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 520 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 579 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 580 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 637 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 638 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 690 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 691 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 732 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A + + Sbjct: 733 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 792 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + + Q S F +A++ + + A+ Sbjct: 793 QKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 852 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 853 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 904 >gi|153838822|ref|ZP_01991489.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] gi|149747752|gb|EDM58648.1| DNA polymerase I [Vibrio parahaemolyticus AQ3810] Length = 677 Score = 290 bits (742), Expect = 6e-76, Method: Composition-based stats. Identities = 100/558 (17%), Positives = 190/558 (34%), Gaps = 105/558 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + L L D+ V N ++ + + GI+ Sbjct: 128 AAYVPVAHDYLDAPEQL----DRDWVLEQLKPILEDDAQAKVGQNLKYDASVLARY-GIE 182 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGSID 141 + ++ T + + N + LAL F +H +GK + F + + Sbjct: 183 MKGIKY-DTMLASYVYNSVGGKHDMDSLALRFLQHSCISFEQIAGKGKNQLT-FNQIEL- 239 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 + Y D + T L RL + E L + Sbjct: 240 ---------------EQASPYAAEDADVTLRLHNRLFANIEQDEKLKSVYEEIEMPLVPV 284 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID + IA ++L++ ++ + + L+ LF G Sbjct: 285 LSRIERTGVLIDDMKLSAQSVEIAARLEELEQKAYEIAEQEF-NMNSPKQLQAILFEKMG 343 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + +V + S + + +LA D L +L + KL + L + ++ GR Sbjct: 344 LPVVKKTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTGR 402 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 403 VHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRRI 437 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ ID+V Sbjct: 438 RQAFVAPAGYKVLAVDYSQIELRIMAHLSGDQALLDAFRDGKDIHAATAAEIMGVSIDQV 497 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------ 474 S EQR K + L Y AK + ++ + + + Sbjct: 498 SSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDKYFERYPGVMQYMEDTRSAA 557 Query: 475 ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ---- 515 + +S + + A+ + GTA +++KKA Q Sbjct: 558 ADKGYVETIFGRRLHLPEIKSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDQWIQE 617 Query: 516 ---GVLQLWKDLTEGFAC 530 G ++L + + Sbjct: 618 EGNGRVKLLMQVHDELVF 635 >gi|260771611|ref|ZP_05880531.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] gi|260613388|gb|EEX38587.1| DNA polymerase I [Vibrio metschnikovii CIP 69.14] Length = 887 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 107/563 (19%), Positives = 191/563 (33%), Gaps = 103/563 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + D P +L ++ + + L L + + V N ++ + + GI Sbjct: 338 AAYVPVGHDYLDAPQQL----DRDWVLAQLKPLLENPQLAKVGQNLKYDASVVARY-GIT 392 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + T + + N + LAL F +H E GK F + + Sbjct: 393 MRGIA-HDTMLASYVYNSVGGKQDMDSLALRFLQHSCISFEQVAGKGKNQLTFNQIDL-- 449 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLD 191 + Y D + T L RL L D E L + Sbjct: 450 --------------EQAAPYAAEDADVTLRLHHRLQALLEADAPLFGVYRDIEVPLVPVL 495 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ID L+ + IAQ +L+ +L D S L+ LF + Sbjct: 496 SRMERTGVLIDDQLLAIQSQEIAQRLVELERKAYELADQEFNLS-SPKQLQTILFEQMKL 554 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRL 305 +V + S + + +LA D L + + KL + L + ++ GR+ Sbjct: 555 PVVKKTPSGTPST-NEEVLQELALDYPLPAVILEYRGLAKLKSTYTDKLPKMINPTTGRV 613 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 614 HTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NQEGRRIR 648 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA +G K++ D + IE R++A ++G+ + AF G+DI+ T A+ ID+V+ Sbjct: 649 QAFIAPSGWKIMAVDYSQIELRIMAHLSGDPALLDAFQQGKDIHTATAAEIIGVSIDQVT 708 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 EQR K + L Y AK S + ++ + + + Sbjct: 709 SEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRSEAQHYMDKYFERYPGVLRYMEETRSMAA 768 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAK 513 + +S + + A+ + GTA +++KKA + Sbjct: 769 EQGYVETLFGRRLHLPEIQSRNGMRRKAAERAAINAPMQGTAADIIKKAMLLVDNWIETE 828 Query: 514 HQGVLQLWKDLTEGFACVVQEGG 536 QG ++L + + VQE Sbjct: 829 GQGRVKLLMQVHDELVFEVQESA 851 >gi|193222215|emb|CAL60497.2| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 917 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 110/578 (19%), Positives = 197/578 (34%), Gaps = 116/578 (20%) Query: 5 FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 ID ET S +P+ + GV AY A+ + D P++L ++++ Sbjct: 343 AIDTETTSLEPMQAQLVGISLCCEPGVAAY------IPVAHRYQDVPLQL----SRASVL 392 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L +L D++ V N ++ +F G+ + T + + S L Sbjct: 393 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 450 Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 AL + ++ GK F + I EY D + T Sbjct: 451 ALRHLNRKTMTFQDVCGKGASQLCFDQVDI----------------ARATEYAAEDADIT 494 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L +R+ P E ++ Q + G ID L+ + + + Sbjct: 495 LQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLE 554 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 +++ +L + + F + +V + S + +LA+D L Sbjct: 555 IEQQAYELAGQPF-NLGSPKQIGEIFFEKMKLPVVKKTPSGSPST-DEEVLQKLAEDYPL 612 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L + + GR+ + TGR S QN+P + Sbjct: 613 PKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYA-QAVAVTGRLSSNDPNLQNIPIR 671 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +V AD + IE R++A I+ Sbjct: 672 ------------------------NAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHIS 707 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ ++AFA GEDI+ T A+ F VS EQR KV+ L Y A Sbjct: 708 EDENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLG 767 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQ 488 + ++++ + D + E+ LW+ + Sbjct: 768 IERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQG 827 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + GTA +L+K A A +Q W + + Sbjct: 828 AERAAINAPMQGTAADLIKLAMIA-----VQDWLEAEK 860 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 Q + D++ M K +++ VHDE+V E P+T V L LM Sbjct: 838 QGTAADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELM 893 >gi|134093551|ref|YP_001098626.1| DNA polymerase I (POL I) [Herminiimonas arsenicoxydans] Length = 911 Score = 290 bits (741), Expect = 6e-76, Method: Composition-based stats. Identities = 110/578 (19%), Positives = 197/578 (34%), Gaps = 116/578 (20%) Query: 5 FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 ID ET S +P+ + GV AY A+ + D P++L ++++ Sbjct: 337 AIDTETTSLEPMQAQLVGISLCCEPGVAAY------IPVAHRYQDVPLQL----SRASVL 386 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L +L D++ V N ++ +F G+ + T + + S L Sbjct: 387 EKLRSWLEDDSKPKVGQNLKYDSHIFANH-GVTLRGI-VHDTLLQSYVFESHRSHDMDSL 444 Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 AL + ++ GK F + I EY D + T Sbjct: 445 ALRHLNRKTMTFQDVCGKGASQLCFDQVDI----------------ARATEYAAEDADIT 488 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L +R+ P E ++ Q + G ID L+ + + + Sbjct: 489 LQLHQRMFPHVAEDAGLSFVYEKIELPTAVVLQKVERNGVLIDPGLLATQSHELGKRMLE 548 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 +++ +L + + F + +V + S + +LA+D L Sbjct: 549 IEQQAYELAGQPF-NLGSPKQIGEIFFEKMKLPVVKKTPSGSPST-DEEVLQKLAEDYPL 606 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L + + GR+ + TGR S QN+P + Sbjct: 607 PKLLLEYRGLSKLKSTYTDKLPKMIDPATGRVHTNYA-QAVAVTGRLSSNDPNLQNIPIR 665 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +V AD + IE R++A I+ Sbjct: 666 ------------------------NAEGRRIREAFIAPPGSVIVSADYSQIELRIMAHIS 701 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ ++AFA GEDI+ T A+ F VS EQR KV+ L Y A Sbjct: 702 EDENMLRAFAEGEDIHRATAAEIFGVARGDVSSEQRRYAKVINFGLIYGMSAFGLAGNLG 761 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQ 488 + ++++ + D + E+ LW+ + Sbjct: 762 IERAAAQSYIEKYFYRFSGVKRYMDDTRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQG 821 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + GTA +L+K A A +Q W + + Sbjct: 822 AERAAINAPMQGTAADLIKLAMIA-----VQDWLEAEK 854 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 Q + D++ M K +++ VHDE+V E P+T V L LM Sbjct: 832 QGTAADLIKLAMIAVQDWLEAEKLQTKMIMQVHDELVLEVPETELALVRVKLPELM 887 >gi|119475294|ref|ZP_01615647.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] gi|119451497|gb|EAW32730.1| DNA polymerase I [marine gamma proteobacterium HTCC2143] Length = 920 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 107/574 (18%), Positives = 193/574 (33%), Gaps = 100/574 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V A A + + +L + + + L L Sbjct: 347 DTETTSLNYMEARVVGVSFAVEAGSAAYVPFGHDYVGVEQQL----SEDWVLAQLKPLLE 402 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D + V N ++R + GI++ ++ T + + L + + Sbjct: 403 DSSRAKVGQNLKYDRNVLANH-GIELNGIQF-DTMLESYV------LNSTATRHDMDSLA 454 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K + + +F I N +Q Q G Y D + T +L + L P Sbjct: 455 RKYLDVGTI--KF--EDIAGKGAKQLTFNQIQL-QQAGPYAAEDADITLQLHEVLWPKLA 509 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E L + I G + DL+ K + ++L+++ +L Sbjct: 510 AIDSLMSVFQTIELSLVPVLSRIERNGALVSRDLLNKQSAELGTRLQQLEKEAHELAGEA 569 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 S L LF + ++ + S + +LA D L R+ + K Sbjct: 570 FNLS-SPKQLGHILFDKLELPVIKKTPKGAASTAEE-VLAELALDYPLPRILMEYRGLSK 627 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + +S GR+ + + TGR S QN+P + Sbjct: 628 LKSTYTDKLPQMISEVTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT----------- 675 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 VR +A +G K+V AD + IE R++A ++ ++ +KAFA G Sbjct: 676 -------------EEGRKVRQAFVARDGYKIVAADYSQIELRIMAHLSQDNGLLKAFAEG 722 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 +DI+ T A+ F +++VS EQR K + L Y AK + Sbjct: 723 KDIHQATAAEVFGLELEQVSTEQRRRAKAINFGLIYGMSAFGLAKQIDVGRHEAQEYIDT 782 Query: 462 FSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIG 500 + + D +A++ + A+ + G Sbjct: 783 YFSRYPGVRDYMDNTRADAAERGYVETLYGRRLYLPEINASNGMRRQAAERTAINAPMQG 842 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++KKA Q ++Q+ +L Sbjct: 843 TAADIIKKAMVDVDRWLLESDVDGQMIMQVHDEL 876 Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMT 652 Q + DI+ + M + + +++ VHDE+V E + + V ++ LM+ Sbjct: 841 QGTAADIIKKAMVDVDRWLLESDVDGQMIMQVHDELVFEVAEPSLDYLVSSVNDLMS 897 >gi|229845908|ref|ZP_04466020.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|229810912|gb|EEP46629.1| DNA polymerase I [Haemophilus influenzae 7P49H1] gi|309973653|gb|ADO96854.1| DNA polymerase I [Haemophilus influenzae R2846] Length = 930 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 104/597 (17%), Positives = 204/597 (34%), Gaps = 108/597 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQS 51 + +D ET S + A + ++A ++ E+S Sbjct: 354 KLIAVDTETDSLDYI----------SANLVGISFALENGEATYLPLQLDYLDAPKTLEKS 403 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 + + L + + + N F+ +F + GI++ + T +L+ T Sbjct: 404 TALAAIKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNM 461 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LA + H T E A + + + + P + EY D + T Sbjct: 462 DDLAKRYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTM 509 Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L E L + + G ID D + IA L Sbjct: 510 KLQQALWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTAL 569 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ L + T L+ LF G+ ++ + S + + +L+ L Sbjct: 570 EKQAYALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELP 627 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 628 KILVEHRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 685 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +V AD + IE R++A ++G Sbjct: 686 -----------------------NEEGRRIRQAFIAHEGYSIVAADYSQIELRIMAHLSG 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---------- 444 + I AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y Sbjct: 723 DQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGI 782 Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQY 489 A+ + + +QQF ++++ + + + S + + Sbjct: 783 SRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGA 842 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K+A + + ++ + + V+ R Sbjct: 843 ERVAINAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899 >gi|300725095|ref|YP_003714423.1| 3' exonuclease [Xenorhabdus nematophila ATCC 19061] gi|297631640|emb|CBJ92353.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Xenorhabdus nematophila ATCC 19061] Length = 930 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 94/572 (16%), Positives = 188/572 (32%), Gaps = 104/572 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L D + + L L D + + N F+R + + D Sbjct: 382 AAYLPLAHDYLDAPQQL-DL---HEVLTALKPLLEDANLPKIGQNLKFDRGVLARY---D 434 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLA---LNFSEHLTKMEEGKALIAR-FCKGSID 141 + + + ++L N + LA L++ + GK F + + Sbjct: 435 VVLEGIVFDTMLESYVLNSVAGRHDMDSLAERHLSYKTTTFEDIAGKGKKQLTFNQIPL- 493 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 + +Y D + T L + + P E L + Sbjct: 494 ---------------EEAAKYAAEDADVTLRLHQAMYPQLASAEVLKKVFQKIEMPLVPV 538 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G ID + + I +L++ L D + L++ LF Sbjct: 539 LSRMERTGVLIDARTLAEHSREITVRLDELEKSAYALADEEFNLA-SPKQLQVILFEKMK 597 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + ++ + S + + +LA++ L R+ + KL + L + V+ R Sbjct: 598 LPVLKKTPNGAPST-NEEVLEELAENHELPRVILEHRGLAKLKSTYTDKLPQMVNPLTNR 656 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + Sbjct: 657 VHTSY-HQAVTATGRLSSRDPNLQNIP------------------------VRNEEGRRI 691 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R IA G +++ AD + IE R++A ++ + + AFA G+DI+ T A+ F P++ V Sbjct: 692 RQAFIAPTGYRIMAADYSQIELRIMAHLSQDKGLLAAFAQGKDIHRATAAEVFGVPLEHV 751 Query: 425 SKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475 + EQR K + L Y A + + + + + + Sbjct: 752 TGEQRRSAKAINFGLIYGMSAFGLSRQLGIPRGEAQRYMDLYFERYPGVLNYMERTRQQA 811 Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV-- 517 + +S + + A+ + GTA +++K A A + Sbjct: 812 AEHGFVETLEGRRLYLPEIKSRNAMRRKASEREAINAPMQGTAADIIKLAMIAVDDWIVS 871 Query: 518 ----LQLWKDLTEGFACVVQEGGSISARRVAN 545 +++ + + V E A + Sbjct: 872 EKPNVRMIMQVHDELVFEVHESELAMAEQKIR 903 Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 16/102 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA- 617 + RRL ++K + A+ RE +Q + DI+ M Sbjct: 816 FVETLEGRRLYLPEIKSRNAMRRKAS---EREAINAP------MQGTAADIIKLAMIAVD 866 Query: 618 -----TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTK 653 K +++ VHDE+V E ++ + + +LM + Sbjct: 867 DWIVSEKPNVRMIMQVHDELVFEVHESELAMAEQKIRALMEQ 908 >gi|229844734|ref|ZP_04464873.1| DNA polymerase I [Haemophilus influenzae 6P18H1] gi|229812448|gb|EEP48138.1| DNA polymerase I [Haemophilus influenzae 6P18H1] Length = 930 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 97/532 (18%), Positives = 186/532 (34%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P Q EY D + T +L + Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LQQATEYAAEDADVTMKLQQA 514 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 574 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 632 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 686 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 727 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A Sbjct: 728 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDA 787 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494 + + + +QQF ++++ + + + S + + A+ Sbjct: 788 QKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 848 NAPMQGTAADIIKRAMIKLDEVIRHDPNIEMIMQVHDELVFEVRSEKVAFFR 899 >gi|114565093|ref|YP_752607.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] gi|114336386|gb|ABI73768.1| DNA polymerase I [Shewanella frigidimarina NCIMB 400] Length = 918 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 111/600 (18%), Positives = 207/600 (34%), Gaps = 111/600 (18%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + ID ET S L + A +A A+ + D P+++ ++++ L Sbjct: 341 IAIDTETTSLNYMEAELVGLSFATEAGKAAYLPLAHDYLDAPLQI----DKASALEKLRP 396 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L +T V N ++ + GI + R+ T + + N + S LAL + Sbjct: 397 ILEGDTPQKVGQNLKYDMSILANA-GISLKGIRF-DTMLESYVFNSIASRHDMDGLALKY 454 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +D + G Y D + T L Sbjct: 455 LGHKNISFEEVAGKGAKQLTFNQVHLD----------------IAGPYAAEDADITLRLH 498 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + + +G ID L+ + +A++ L+ Sbjct: 499 QHLWPRLEKEPELASVFNELELPLIKVLSDVERQGVLIDSMLLSQQSGELAKKLDDLENK 558 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ + + L+ F G + + S + + +LA D L ++ Sbjct: 559 AYEIAEEKFNLA-SPKQLQTLFFEKLGYPIKKKTPKGAPST-AEDVLIELALDYPLPKVI 616 Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V++ GR+ + A+ TGR S QN+P + Sbjct: 617 LEHRSLAKLKSTYTDKLPLMVNATTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G+K++ AD + IE R++A ++ + Sbjct: 673 ---------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 711 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFA G+DI+ T A+ F ++V+ EQR K + L Y AK + Sbjct: 712 LLTAFAEGKDIHKATAAEVFGVHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRN 771 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 772 EAQKYIDTYFARYPGVLKYMEETRAIAAELGYVSTLFGRRLYLPEINDRNAMRRQAAERA 831 Query: 493 AVKDKLIGTACELVKKAWRAKHQ-----------GVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++KKA A HQ ++Q+ +L E Sbjct: 832 AINAPMQGTAADIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVC 891 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M T+ +++ VHDE+V E + ++ +C LM + Sbjct: 838 QGTAADIIKKAMIAIHQWINQDTQGEITLIMQVHDELVFEVDEAQAETLKTKVCDLMAQA 897 >gi|220933279|ref|YP_002512178.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] gi|219994589|gb|ACL71191.1| DNA polymerase I [Thioalkalivibrio sp. HL-EbGR7] Length = 903 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 104/582 (17%), Positives = 199/582 (34%), Gaps = 118/582 (20%) Query: 1 MSKL------FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKL 44 M +L D ET S + K G AY A+ + D P + Sbjct: 318 MKRLETAELFAFDTETTSLDYMQAQVVGVSFAVKTGEAAY------LPLAHDYADAPQQ- 370 Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 + L L + H+ ++R + GI++ T + + Sbjct: 371 --LDRDETL-KRLKPLLESARHKKLGHHLKYDRNVLLNH-GIELNGIE-HDTMLESYVLN 425 Query: 105 LPSS-LKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLF 159 +S LA + ++ T E GK F + I+ D T Sbjct: 426 STASRHDMDSLAQKYLDYRTTHYEEVAGKGAKQIPFSQVRIE----DAT----------- 470 Query: 160 GEYCKRDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L + L P + E L + + G ++D + + Sbjct: 471 -PYAAEDADITLRLHEHLWPQLSAAEGQCRVYREIEMPLVPVLSRMERTGVKVDAERLFA 529 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 +A+ +++ + ++ G + ++ L+ + ++ + S + Sbjct: 530 QSHELAERMGQIEREAHEVAGGAF-NLGSPKQIQEILYERQKLPVLRKTPKGQPST-AED 587 Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSG 322 + QLA D L +L ++ KL + L E + D GR+ + + TGR S Sbjct: 588 VLEQLALDYPLPKLILEHRSLSKLKSTYTDKLPERIDPDTGRVHTSY-HQAVASTGRLSS 646 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R +A +G++LV AD + Sbjct: 647 SDPNLQNIPIRT------------------------EEGRRIRQAFVAPSGRRLVAADYS 682 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++G+ ++AFA G+DI+ T A+ F +D+VS EQR K + L Y Sbjct: 683 QIELRIMAHLSGDAGLLRAFAEGQDIHRATAAEVFGVGLDQVSGEQRRAAKAINFGLIYG 742 Query: 443 GG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477 A+ + ++ + + Sbjct: 743 MSAFGLARQLGIERGDAQDYVDRYFARYPGVKDYMESTREKARDLGYVETLFGRRLYLPD 802 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + ++ Q A+ + GTA +++K+A Q + + Sbjct: 803 INARNGQIRAQAERVAINAPMQGTAADIIKRAMIQVDQWIRE 844 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 16/97 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGY 622 RRL D+ + +Q R +Q + DI+ M + Sbjct: 795 GRRLYLPDI---NARNGQIRAQAERVAINAP------MQGTAADIIKRAMIQVDQWIRES 845 Query: 623 DI----VLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 I +L VHDE+V E + V LC M++ Sbjct: 846 RIPAVMILQVHDELVLEVDEDAVDKVREELCVRMSQA 882 >gi|301169575|emb|CBW29176.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus influenzae 10810] Length = 935 Score = 290 bits (741), Expect = 8e-76, Method: Composition-based stats. Identities = 96/532 (18%), Positives = 186/532 (34%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 414 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 471 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 472 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 519 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 520 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 579 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 580 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 637 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 638 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 690 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 691 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 732 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A Sbjct: 733 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDA 792 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494 + + + +QQF +++ + + + S + + A+ Sbjct: 793 QKYMDLYFQRYPSVQQFMTDIREKAKTQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 852 Query: 495 KDKLIGTACELVKKAWRAKHQGV-----LQLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + +++ + + V+ R Sbjct: 853 NAPMQGTAADIIKRAMIKLDEVIHHDPNIEMIMQVHDELVFEVRSEKVAFFR 904 >gi|68249450|ref|YP_248562.1| DNA polymerase I [Haemophilus influenzae 86-028NP] gi|68057649|gb|AAX87902.1| DNA polymerase I [Haemophilus influenzae 86-028NP] Length = 930 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 96/503 (19%), Positives = 179/503 (35%), Gaps = 83/503 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 409 IKPILENPDIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 467 RYLGHETIAFESIAGKGK-NQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID + + IA L+E Sbjct: 515 LWLKLQQEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQAY 574 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + T L+ LF G+ ++ + S + + +LA L ++ Sbjct: 575 ELAGQPFNLA-STKQLQEILFDKLGLPILQKTPKGAPST-NEEVLEELAYSHELPKILVE 632 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 686 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 727 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A Sbjct: 728 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLDISRPDA 787 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494 K + + +QQF +++ + + + S + + A+ Sbjct: 788 KKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847 Query: 495 KDKLIGTACELVKKAWRAKHQGV 517 + GTA +++K+A + + Sbjct: 848 NAPMQGTAADIIKRAMIKLDEVI 870 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 603 QAISRDILCEGMKNATKNGY-----DIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651 Q + DI+ M + Y ++++ VHDE+V E + F + M Sbjct: 852 QGTAADIIKRAMIKLDEVIYHDPDIEMIMQVHDELVFEVRSEKVEFFREQIKQQM 906 >gi|145628242|ref|ZP_01784043.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145638340|ref|ZP_01793950.1| DNA polymerase I [Haemophilus influenzae PittII] gi|144980017|gb|EDJ89676.1| DNA polymerase I [Haemophilus influenzae 22.1-21] gi|145272669|gb|EDK12576.1| DNA polymerase I [Haemophilus influenzae PittII] gi|309751482|gb|ADO81466.1| DNA polymerase I [Haemophilus influenzae R2866] Length = 935 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 95/532 (17%), Positives = 179/532 (33%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 414 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 471 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 472 RYLGHETIAFESIAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 519 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID + + IA L+E Sbjct: 520 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSNALFMQSNEIATRLTALEEQAY 579 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 580 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 637 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 638 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 690 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 691 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 732 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AF+ G+DI+ +T A+ F +D+++ EQR K + L Y A + + Sbjct: 733 NAFSQGKDIHRSTAAEIFGVSLDEITSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 792 Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494 + + Q S F S + + A+ Sbjct: 793 QKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 852 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 853 NAPMQGTAADIIKRAMIKLDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 904 >gi|307128781|ref|YP_003880797.1| DNA polymerase I [Dickeya dadantii 3937] gi|306526310|gb|ADM96240.1| DNA polymerase I [Dickeya dadantii 3937] Length = 944 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 93/547 (17%), Positives = 183/547 (33%), Gaps = 100/547 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L D+ + + N F++ + + GID+ + T + + + L+ Sbjct: 421 LKPLLEDDGIRKIGQNLKFDKGVMARY-GIDLRGIAF-DTMLESYVLDSVAGRHDMDSLS 478 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F + + Y D + T Sbjct: 479 ERYLQHKTITFEEIAGKGKNQLTFDQIPL----------------AQASVYAAEDADVTL 522 Query: 172 ELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L + + L + I G ID ++ + + Q +L Sbjct: 523 RLHETLWAKLEPQQELRKVFQNIDMPLVPVLSRIERTGVLIDTTILAEHSRELTQRLAEL 582 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + +L S L L+ + ++ + S + + +LA D L Sbjct: 583 EVQAHELAGEAFNLS-SPKQLGAILYEKLQLPVIKKTPKGAPST-NEEVLAELALDYPLP 640 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + KL + L + ++ R T + TGR S QN+P Sbjct: 641 KLILEHRGLAKLKSTYTDKLPQMINPLTRRVHTSYHQAVTATGRLSSSDPNLQNIP---- 696 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G +++ AD + IE R++A ++ + Sbjct: 697 --------------------VRNEEGRRIRQAFIAPEGYRILAADYSQIELRIMAHLSRD 736 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----------- 444 ++AF++G DI+ T A+ F P+D+V+ EQR K + L Y Sbjct: 737 AGLLRAFSHGLDIHRATAAEVFGLPLDRVTTEQRRSAKAINFGLIYGMSAFGLSRQLAIP 796 Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYP 490 A+ + + +Q++ + + + + + S ++ + Sbjct: 797 RSEAQKYMNLYFERYPGVQEYMERTRQQAVDQGYVSTLDGRRLYLPDIHSRNVNSRKAAE 856 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISA 540 A+ + GTA +++KKA A ++Q+ +L V + S Sbjct: 857 RAAINAPMQGTAADIIKKAMIAIDAWLRQEKPLVTMLMQVHDELVFEVHHSVLDEASAKI 916 Query: 541 RRVANVP 547 R + Sbjct: 917 RNLMEGC 923 >gi|307254261|ref|ZP_07536102.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258723|ref|ZP_07540455.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306862808|gb|EFM94761.1| hypothetical protein appser9_5120 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867074|gb|EFM98930.1| hypothetical protein appser11_5210 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 957 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 98/559 (17%), Positives = 190/559 (33%), Gaps = 99/559 (17%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 +L L V + N ++ +F G+ + + T + + T LA Sbjct: 434 ELKPLLESADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDELA 491 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + H T E GK F K +ID + +Y D + T Sbjct: 492 DRYLGHKTIEFEEIAGKGKNQLTFDKIAID----------------IASQYAAEDADVTM 535 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P ++ E L + I G ID + +L I Q +L Sbjct: 536 KLHQVLSPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSEL 595 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 596 EQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVP 654 Query: 281 RLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 655 KLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR- 712 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA +G K+V AD + IE R++A +A Sbjct: 713 -----------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLAN 749 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 750 DEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGI 809 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + ++++ Q + F + +S + + Sbjct: 810 SRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKAA 869 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A+ + GTA +++K A + + + ++Q + V V Sbjct: 870 ERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DDNIKMIMQ----VHDELVFEVKEE 920 Query: 550 VMRRHKRDVHIVLPSSRRL 568 ++ + + + + + +L Sbjct: 921 LIEHYSQLIKAEMEKAIQL 939 >gi|77361672|ref|YP_341247.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] gi|76876583|emb|CAI87805.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas haloplanktis TAC125] Length = 911 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 98/584 (16%), Positives = 193/584 (33%), Gaps = 105/584 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L + A +A A+ + P +L + L L Sbjct: 337 DTETTSLDYMQAQLVGMSFAVKAGEAAYLPVAHDYPGAPEQL----SLEFVMQKLGPILA 392 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 D V N +++ + G + ++ T + + + + LAL F H Sbjct: 393 DAKKAKVGQNLKYDKSVLANA-GYQLNGIKF-DTMLESYVLNSVGTRHDMDSLALKFLGH 450 Query: 122 LT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + GK F + +D G Y D + T L + L Sbjct: 451 KNISFEDIAGKGKKQLTFNQVELDKA----------------GPYAAEDADITLRLHQVL 494 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P D E L + I G ID ++ + + + +L+++ + Sbjct: 495 WPKLAADEKLKSVFEDIEMPLVNVISDIERTGVAIDSKMLAAHSQRLGERLLELEKEAYE 554 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + S L++ LF + ++ + S + +LA D L ++ Sbjct: 555 IAGEPFNLS-SPKQLQVLLFEKLELPIIKKTPKGAPSTAEE-VLQELAHDYPLPKVIIEH 612 Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ + T + TGR S QN+P + Sbjct: 613 RGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRS------- 665 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA++G K+V AD + IE R++A ++ + + A Sbjct: 666 -----------------EEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSA 708 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FANG D++ T A+ F +++V+ + R K + L Y A+ Sbjct: 709 FANGLDVHSATAAEVFGVSLEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQH 768 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + ++ + + + + ++ + + A+ Sbjct: 769 YIDKYFERFPGVLEYMETTREKAAESGYVETIFGRRLYLPEIKAQNGARRKGAERAAINA 828 Query: 497 KLIGTACELVKKAWRAKH-------QGVLQLWKDLTEGFACVVQ 533 + GTA +++KKA + H ++L + + ++ Sbjct: 829 PMQGTAADIIKKAMLSVHSWVYEQAPNTVKLLMQVHDELVFEIK 872 >gi|153871900|ref|ZP_02000951.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] gi|152071634|gb|EDN69049.1| DNA-directed DNA polymerase [Beggiatoa sp. PS] Length = 914 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 99/597 (16%), Positives = 192/597 (32%), Gaps = 117/597 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56 D ET S L QA I ++A + + Sbjct: 342 DTETTSLDYL----------QAQIVGVSFAVQVGEAAYVPLAHDYLGAPQQLSCDNVLAV 391 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + + N ++ + GI + + T + + + LA Sbjct: 392 LKPLLENPKKRKIGQNLKYDAHVLANH-GIHLQGMAF-DTMLESYVLNSTTKHDMDSLAQ 449 Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + T + GK F + + + Y D + T + Sbjct: 450 IYLQKTTITFEDVAGKGKKQLSFNQIPL----------------EHATPYACEDADITLQ 493 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L D E L + + G +ID L+ + +A ++L+ Sbjct: 494 LHQNLWEQLQNRPKLERIFDDLEMPLIPVLIRMERHGVKIDATLLHQQSAELATRLQQLE 553 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + + + L+ LF + ++ + S + + +LA D L + Sbjct: 554 QAAYEEAGTEF-NLNSPKQLQTILFDKLSLPVLKKTPKKDPST-AVEVLEELAIDYPLPQ 611 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L ++ KL +TL + ++ GR+ + + TGR S QN+P + Sbjct: 612 LILIYRSLSKLKSTYTDTLPQQINPKTGRVHTSY-HQAVTTTGRLSSTNPNLQNIPIRS- 669 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G L+ AD + IE R++A ++ + Sbjct: 670 -----------------------AEGRRIRQAFIAPKGYCLLAADYSQIELRIMAHLSED 706 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 + + A GEDI+ A+ F+ +D+V+ EQR K + L Y G AK Sbjct: 707 EKLLSALTAGEDIHKAVAAEVFDLAMDEVTTEQRRQAKAVNFGLMYGMQAFGLAKQLGIE 766 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 + + + + D + ++ H+ + Sbjct: 767 RHQAQIYMDAYFARYPGVKAYMDDMRVLAKQQGYVETVFGRRLYIPEIKTRHIGRRQAAE 826 Query: 491 EFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +L+K+A W K +++ + + + E A+ Sbjct: 827 RTAINAPMQGTAADLIKRAMLTVDDWIEKSGLDVKMLMQVHDELVFEIAETVIEEAK 883 >gi|88858644|ref|ZP_01133285.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] gi|88818870|gb|EAR28684.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas tunicata D2] Length = 916 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 100/585 (17%), Positives = 195/585 (33%), Gaps = 105/585 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L + A +A + + P +L + + + L L Sbjct: 342 DTETTSLDYMQADLVGMSFAVEAGKAAYLPIGHDYLGAPEQL----SKEMVFAKLGPLLA 397 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 DE V N +++ + + G+++ ++ T + + + + LAL + H Sbjct: 398 DEQRPKVGQNLKYDKSVLARA-GLELNGIKF-DTMLESYVLNSVGTRHDMDSLALKYLGH 455 Query: 122 LTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 E GK F + +D Y D + T L + L Sbjct: 456 KNISFEEIAGKGKNQLTFNQIELDKAA----------------PYAAEDADITLRLHQML 499 Query: 178 IPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P + E L + I G ID D++ K I + +L+++ + Sbjct: 500 WPKLEADEKLKVVFETIELPLVSVLSDIERTGVEIDSDMLAKQSFEIGKRLDELEKEAHE 559 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L S L++ LF + ++ + S + +LA D L +L Sbjct: 560 LAGEAFNLS-SPKQLQVILFEKHELPVIKKTPKGAPSTAEE-VLQELAHDYPLPKLIIEH 617 Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V++D + T + TGR S QN+P + Sbjct: 618 RGLSKLKSTYTDKLPLMVNADTQRVHTSYHQAITATGRLSSTDPNLQNIPIRT------- 670 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A+ G K+ AD + IE R++A ++ + + A Sbjct: 671 -----------------EEGRKIRQAFVAAKGYKIAAADYSQIELRIMAHLSQDKGLLNA 713 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA G D++ T A+ F + +V+ + R K + L Y A+ Sbjct: 714 FAQGLDVHSATAAEVFGVSVAEVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQH 773 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + ++ + + + + + + + A+ Sbjct: 774 YIDKYFERFPGVLEYMESTREKAAELGYVETLFGRRLYLPEINARNGASRKAAERAAINA 833 Query: 497 KLIGTACELVKK------AWRAKHQ-GVLQLWKDLTEGFACVVQE 534 + GTA +++KK AW ++L + + ++E Sbjct: 834 PMQGTAADIIKKAMITVNAWVKAQPANTVRLLMQVHDELVFEIKE 878 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 21/119 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RRL + + N A+ + R +Q + DI+ + M Sbjct: 807 GRRLYLP----EINARNGASRKAAERAAINAP------MQGTAADIIKKAMITVNAWVKA 856 Query: 620 ---NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKAEGYEAKRYR 674 N +++ VHDE+V E + + +C LM++ A +PL E ++ Sbjct: 857 QPANTVRLLMQVHDELVFEIKEECVGDYMQHICLLMSQAA--ALDVPLIVESDSGDNWQ 913 >gi|182679659|ref|YP_001833805.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] gi|182635542|gb|ACB96316.1| DNA polymerase I [Beijerinckia indica subsp. indica ATCC 9039] Length = 1043 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 109/606 (17%), Positives = 193/606 (31%), Gaps = 111/606 (18%) Query: 4 LFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQS-----AMP 54 L ID ET S P+ G+ AE +A + + D E +P Sbjct: 454 LAIDTETTSLDPMLADLAGLSLCAEPGKAFYVPVGHTSGEGQ----DLFEGKGLLPGQLP 509 Query: 55 -----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 L L D +++ + N ++ I+ K+ G+++ GL Sbjct: 510 IGVVLERLKPLLEDPSILKIGQNVKYDWIVLKQH-GVEMRPLDDTLLLSYVLDAGLTDHG 568 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + + F I +A EY D + Sbjct: 569 MDVLSEKHLGHKPIPFSAVAGSGRTF----IGFARVAIDKAT---------EYAAEDADV 615 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L++ L P ER + + + RG ID L+ +L AQ+ + Sbjct: 616 TLRLWRVLKPRLPAEKMTTVYETLERPMIDVLARMERRGVAIDPPLLGRLSSDFAQDMAR 675 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD--- 276 + +I +L + L LF G+ + T + + LA+ Sbjct: 676 YEAEIYELAGEKF-NLGSPKQLGDILFGKLGLPGAKKT-ATGAWSTAAGVLEDLAEQGVD 733 Query: 277 ---LILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 IL+ + + L ++ GR+ + A+ TGR S QN+P Sbjct: 734 LAARILDWRQLAKLKSTYTDALPNYINPSSGRVHTSYAL-AATTTGRLSSSEPNLQNIP- 791 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 A +R IA G+KLV AD + IE R+LA I Sbjct: 792 -----------------------VRNEAGRKIRRAFIAPPGRKLVSADYSQIELRLLAHI 828 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 A AFA DI+ T ++ F P++ + E R K + + Y G A Sbjct: 829 ADIKSLKNAFAENLDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQL 888 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------- 492 ++++ + + D + ++ + YP Sbjct: 889 AIPREEAAAYIKKYFERFPGIRAYMDDTKKKARENGYVETIFGRKCHYPRIKASNPSERA 948 Query: 493 -----AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537 A+ + G+A +++++A + Q +LQ+ +L E Sbjct: 949 LNERAAINAPIQGSAADIIRRAMIHMEAALAAEKLSAQMLLQVHDELIFEVPDDEVEATI 1008 Query: 538 ISARRV 543 R++ Sbjct: 1009 AVVRKI 1014 >gi|148828039|ref|YP_001292792.1| DNA polymerase I [Haemophilus influenzae PittGG] gi|148719281|gb|ABR00409.1| DNA polymerase I [Haemophilus influenzae PittGG] Length = 930 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 96/532 (18%), Positives = 182/532 (34%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 574 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 632 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 686 ------------------NEEGRRIRQAFIARKGYSIVAADYSQIELRIMAHLSGDQGLI 727 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A + + Sbjct: 728 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 787 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + + Q S F +A++ + + A+ Sbjct: 788 QKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 848 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899 >gi|322514149|ref|ZP_08067216.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] gi|322119989|gb|EFX91987.1| DNA-directed DNA polymerase I [Actinobacillus ureae ATCC 25976] Length = 957 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 98/560 (17%), Positives = 193/560 (34%), Gaps = 101/560 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L + V + N ++ +F G+ + + T + + T L Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDEL 490 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + H T E GK F K +ID +Y D + T Sbjct: 491 AERYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVT 534 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P ++ E L + I G I+ + +L I Q + Sbjct: 535 MKLHQVLAPELDKAPTLVKLFNEIEMPLVEVLSRIERNGVLIEPEKLLAQSAEIEQRLAE 594 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGRGHLV 653 Query: 280 NRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I + G K+V AD + IE R++A +A Sbjct: 713 ------------------------NEEGRRIRQAFITNKGYKIVAADYSQIELRIMAHLA 748 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 749 NDEGMIIAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808 Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488 + ++++ Q + F + +S + + Sbjct: 809 ISRADAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKA 868 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISARRV 543 A+ + GTA +++K A + + ++ + + V+E RV Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRGDENIKMIMQVHDELVFEVKE------ERV 922 Query: 544 ANVPRLVMRRHKRDVHIVLP 563 + +L+ ++ + + +P Sbjct: 923 EHYSQLIKAEMEKAIQLKVP 942 >gi|307245312|ref|ZP_07527400.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306853653|gb|EFM85870.1| hypothetical protein appser1_5170 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 957 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 99/560 (17%), Positives = 190/560 (33%), Gaps = 99/560 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L + V + N ++ +F G+ + + T + + T L Sbjct: 433 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVAGVAF-DTMLESYTLNSTGRHNMDEL 490 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + H T E GK F K +ID +Y D + T Sbjct: 491 ADRYLGHKTIEFEEIAGKGKNQLTFDKIAIDVA----------------SQYAAEDADVT 534 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L P ++ E L + I G ID + +L I Q + Sbjct: 535 MKLHQVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSVEIEQRLSE 594 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ + + + T L+ LF G+ ++ + S + ++ Sbjct: 595 LEQLVHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLV 653 Query: 280 NRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 PKLLMEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR 712 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +G K+V AD + IE R++A +A Sbjct: 713 ------------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLA 748 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + Sbjct: 749 NDEGMITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLG 808 Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488 + ++ + Q + F + +S + + Sbjct: 809 ISRADAKKYMELYFQRYPAVQQFMTDIRESASKKGYVETLFGRRLYLPEIKSSNAMRRKA 868 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + GTA +++K A + + E ++Q + V V Sbjct: 869 AERVAINAPMQGTAADIIKVAMIGIDKAIRG-----DENIKMIMQ----VHDELVFEVKE 919 Query: 549 LVMRRHKRDVHIVLPSSRRL 568 ++ + + + + + +L Sbjct: 920 ELVEHYSQLIKAEMEKAIQL 939 >gi|183597070|ref|ZP_02958563.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] gi|188023732|gb|EDU61772.1| hypothetical protein PROSTU_00309 [Providencia stuartii ATCC 25827] Length = 930 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 98/574 (17%), Positives = 190/574 (33%), Gaps = 102/574 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY----LRDETVMCVAHNSLFERILFKKT 83 A + + D PV+L +D+L L ++ ++ + N ++ + Sbjct: 380 AAYLPLGHDYLDAPVQLP--------LNDVLAAMKPILENDKILKIGQNLKYDAEVL--- 428 Query: 84 LGIDIPSKRWI-CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 L DI K T + + + + + HL IA K + Sbjct: 429 LNYDIELKGIAFDTMLESYVLNSVAGMGRHDMDSLAERHLNHKTVSFEEIAGKGKKQLTF 488 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + A + Y D + T L + L P + E L + Sbjct: 489 ---------NQIALEQAANYAAEDADVTLLLHQALYPQLEAEPKLNHVFREIEMPLVPVL 539 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + +G ID ++ + I +L+++ +L + T L+ LF + Sbjct: 540 VRMERKGVLIDAAVLAAQSKEITARLAELEKEAFELAGEEFNLA-STKQLQTILFEKLQL 598 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLR 306 +V + S + + +LA + L +L ++ KL + L +S+ + Sbjct: 599 PVVKKTPSGAPST-NEEVLEELALNHALPKLLLEHRSLAKLKSTYTDKLPLMISTKTQRV 657 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + TGR S QN+P + +R Sbjct: 658 HTSYHQAVTATGRLSSRDPNLQNIPVRT------------------------EEGRRIRQ 693 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 IA G K+V AD + IE R++A ++ + + AFA G+DI+ T A+ F P+D+V+ Sbjct: 694 AFIARKGYKVVAADYSQIELRIMAHLSQDKGLLTAFAEGKDIHRATAAEVFGVPLDEVTS 753 Query: 427 EQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAESH 481 +QR K + L Y A+ + + + E+ + Sbjct: 754 DQRRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLRYMENTRHQAAE 813 Query: 482 HLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKH------- 514 ++ + A+ + GTA +++KKA A Sbjct: 814 QGYVETLEGRRLYLADIKSSNGMRRKAAEREAINAPMQGTAADIIKKAMIAVDAWLQTEK 873 Query: 515 ---QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 ++Q+ +L + + R + Sbjct: 874 PHADMLMQVHDELVFEVKESELDSVTTKIRELME 907 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 16/96 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNAT 618 RRL +D+K RE +Q + DI+ + M Sbjct: 822 GRRLYLADIKSSN---GMRRKAAEREAINAP------MQGTAADIIKKAMIAVDAWLQTE 872 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTK 653 K D+++ VHDE+V E ++ SV + LM + Sbjct: 873 KPHADMLMQVHDELVFEVKESELDSVTTKIRELMEQ 908 >gi|310765929|gb|ADP10879.1| DNA polymerase I [Erwinia sp. Ejp617] Length = 929 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 113/615 (18%), Positives = 207/615 (33%), Gaps = 111/615 (18%) Query: 7 DIETRSPQPLPKV--GVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 D+ET S L G+ ++A A+ + D P +L ++S + + L L Sbjct: 355 DLETDSLDTLSANIIGL-SFATAPGEAAYLPVAHDYLDAPEQL----DRSDVLARLKPLL 409 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFS 119 D V N F+R + K+ DI + ++L N + LA + Sbjct: 410 EDPQAQKVGQNLKFDRGVLKRY---DIELQGIRFDTMLESYALNSVAGRHDMDTLASRWL 466 Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H T E GK F + +++ + Y D + T +L Sbjct: 467 NHKTVTFEEIAGKGKNQLTFNQIALEQAAH----------------YAAEDADVTLQLHV 510 Query: 176 RLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ P + E+ L + I G I ++ + + +L+ Sbjct: 511 KMWPELEKEQGPKNVFEHVEMPLVPVISRIERNGVLIAPGILATHSQELGSRLAELELKA 570 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L S L+ LF GI + G S S + +LA D L ++ Sbjct: 571 HELAGEPFNLS-SPKQLQTILFEKQGIKPTKKTPGGAPST-SEEVLAELALDYPLPKVIL 628 Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ + + TGR S QN+P Sbjct: 629 EHRGLAKLKSTYTDKLPLMINPHSGRVHTSY-HQTVTATGRLSSSDPNLQNIP------- 680 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G ++V AD + IE R++A ++ + Sbjct: 681 -----------------VRNDEGRRIRQAFIAPQGHRIVAADYSQIELRIMAHLSQDKGL 723 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454 + AFA+ +DI+ T A+ F +DKVS EQR K + L Y A + A Sbjct: 724 LSAFASEQDIHRATAAEVFGVSLDKVSGEQRRSAKAINFGLIYGMSAFGLSRQLNIGAGE 783 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 + + + + + ++ + + A Sbjct: 784 AKKYMDLYFERYPGVLQYMESTRELAAQKGYVSTLDGRRLYLPDIKASNAMRRKAAERAA 843 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++K+A A + L + + V+ + V V + Sbjct: 844 INAPMQGTAADIIKRAMIAVD-------RWLEQQPSPEVKMIMQVHDELVFEVHADAVEA 896 Query: 554 HKRDVHIVLPSSRRL 568 + ++ S +L Sbjct: 897 ACAQIRALMEGSMKL 911 >gi|330444881|ref|ZP_08308536.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489191|dbj|GAA03033.1| DNA polymerase I, 3' -- 5' polymerase, 5' -- 3' and 3' -- 5' exonuclease [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 923 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 102/559 (18%), Positives = 187/559 (33%), Gaps = 95/559 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + + L L D + N F+ + + GI+ Sbjct: 374 AAYVPVAHDYLDAPAQL----DRDWVLAQLKPLLEDPNQAKIGQNLKFDASIVARY-GIE 428 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + T + + N + LAL + EH E I Sbjct: 429 MQGIVF-DTMLESYVFNSVVGRHDMDSLALRYLEHKNISFE-----------EIAGKGKK 476 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTIN 195 N + Q G Y D + T L L P + E L + + Sbjct: 477 QLTFNQIDLAQA-GPYAAEDADITLRLHNALYPKVEADEKLKHVFETIEMPLVPVLSRME 535 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G +D L+ IA +L++ ++ D S L+ LF G+ ++ Sbjct: 536 RTGVYVDSMLLGAQSTEIAARLDELEKKAFEIADQEFNLS-SPKQLQAILFEKMGLPVLK 594 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309 + S + + +LA D L +L + KL + L + V+ GR+ + Sbjct: 595 KTPSGTPST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMVNPATGRVHTSY 653 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R + Sbjct: 654 -HQAVTATGRLSSSDPNLQNIP------------------------VRNEEGRRIRQAFV 688 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ I++VS EQR Sbjct: 689 AQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILGLDIEQVSSEQR 748 Query: 430 AIGKVMELALGYQGGAKVFKTM----ASHCGLDLQQFSQNVKSTSTFED----------- 474 K + L Y A + + + + + + Sbjct: 749 RRAKAINFGLIYGMSAFGLAKQLDMGRNEAQDYMNVYFERYPGVLEYMESTRNTASEKGY 808 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH-------QGV 517 +S + + A+ + GTA +++K A A Q Sbjct: 809 VETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKLAMIAVDNWVQQQPQDE 868 Query: 518 LQLWKDLTEGFACVVQEGG 536 ++L + + V+E Sbjct: 869 VRLLMQVHDELVFEVKESA 887 >gi|315125371|ref|YP_004067374.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] gi|315013884|gb|ADT67222.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Pseudoalteromonas sp. SM9913] Length = 911 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 97/584 (16%), Positives = 195/584 (33%), Gaps = 97/584 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L + A +A A+ + P +L + L L Sbjct: 337 DTETTSLEYMKAQLVGMSFAVKAGEAAYLPIAHDYPGAPEQL----SLEFVMQKLGPILA 392 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 DE V N +++ + G ++ ++ T + + N + + LAL + H Sbjct: 393 DENKAKVGQNLKYDKSVLANA-GYELNGIKF-DTMLESYVFNSVGTRHDMDSLALKYLGH 450 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 E I N ++ + Y D + T L + L P Sbjct: 451 KNISFE-----------DIAGKGKKQLTFNQIEL-EKAAPYAAEDADITLRLHQVLWPKL 498 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 D E L + I G ID +++ + + + +L+++ ++ Sbjct: 499 EADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLATHSQRLGERLLELEKEAFEIAGE 558 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 S L++ LF + ++ + S + +LA D L ++ + Sbjct: 559 PFNLS-SPKQLQVLLFEKLELPVIKKTPKGAPSTAEE-VLQELAHDYPLPKVIIEHRGLS 616 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L V+ + T + TGR S QN+P + Sbjct: 617 KLKSTYTDKLPLIVNERTQRVHTSYHQAVTATGRLSSSDPNLQNIPIRS----------- 665 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA++G K+V AD + IE R++A ++ + + AFANG Sbjct: 666 -------------EEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLSAFANG 712 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F +++V+ + R K + L Y A+ + + Sbjct: 713 LDVHSATAAEVFGVELEEVTSDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDK 772 Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500 + + + + + + + + A+ + G Sbjct: 773 YFERFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQG 832 Query: 501 TACELVKKAWRAKH-------QGVLQLWKDLTEGFACVVQEGGS 537 TA +++KKA + H ++L + + ++ + Sbjct: 833 TAADIIKKAMLSVHAWVNQQAPNTVKLLMQVHDELVFEIKTECT 876 >gi|165975932|ref|YP_001651525.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876033|gb|ABY69081.1| DNA polymerase I [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 919 Score = 288 bits (738), Expect = 2e-75, Method: Composition-based stats. Identities = 93/527 (17%), Positives = 182/527 (34%), Gaps = 87/527 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L + V + N ++ +F G+ + + T + + T L Sbjct: 395 TELKPLLENADVKKIGQNIKYDLTIFANH-GVQVEGVAF-DTMLESYTLNSTGRHNMDEL 452 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 A + H T E A + + ++D D +Y D + T +L Sbjct: 453 ADRYLGHKTIEFEEIAGKGK-NQLTLDKIAIDVAS-----------QYAAEDADVTMKLH 500 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I G ID + +L I Q +L++ Sbjct: 501 QVLAPELEKAPTLVKLFNEIEMPLVEVLSRIERNGVLIDPEKLLAQSAEIEQRLAELEQL 560 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + + T L+ LF G+ ++ + S + ++ +L Sbjct: 561 VHSEAGEVFNLA-STKQLQEILFTKLGLPVLKKTPKGAPSTNEEVLDELAGQGHLVPKLL 619 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 620 MEHRGLSKLKSTYTDKLPLMINQKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR---- 674 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA +G K+V AD + IE R++A +A ++ Sbjct: 675 --------------------NEEGRRIRQAFIARDGYKIVAADYSQIELRIMAHLANDEG 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 I AFA G+DI+ T A+ F +D+V+ EQR K + L Y + + Sbjct: 715 MITAFAEGKDIHRATAAEIFGLALDQVTSEQRRSAKAINFGLIYGMSEFGLSNQLGISRA 774 Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492 ++++ Q + F + +S + + Sbjct: 775 DAKKYMERYFQRYPAVQQFMTDIRESASEKGYVETLFGRRLYLPEIKSSNAMRRKAAERV 834 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQE 534 A+ + GTA +++K A + + ++ + + V+E Sbjct: 835 AINAPMQGTAADIIKVAMIGIDKAIRGDDNIKMIMQVHDELVFEVKE 881 >gi|226225416|ref|YP_002759522.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] gi|226088607|dbj|BAH37052.1| DNA polymerase I [Gemmatimonas aurantiaca T-27] Length = 984 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 103/525 (19%), Positives = 179/525 (34%), Gaps = 95/525 (18%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK------KTLGIDIPSKRW 93 EPV L + P L L D +V +A N+ ++ ++ + +G D + Sbjct: 446 EPVNLPPFDSDACAP--LRAMLEDPSVTKIAQNAKYDLLVLRSSGVRVAGVGFDTMLASY 503 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + R++GL L L + + T + +GK + P+D + Sbjct: 504 VLDPGR-RSHGLDL-LALEQLGHTMTAYDTLVGKGKTQL-----------PFDVAPVDTA 550 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDL 203 + + DV+ T L +L P+ + E L + + G IDL Sbjct: 551 RDYS------CEDVDITMRLRAKLEPMLAEHALLSLFQEIEVPLVSVLAEMEWEGIAIDL 604 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263 D L+ A ER ++++ I + LR LF G+ + + Sbjct: 605 DWFASLKARFAAERGRVEQAIYAEAGEEF-NINSNPKLRAILFEKLGLPVKKKT--ATGP 661 Query: 264 ILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRT 317 S + +LA++ +L L I KL + L V R T S T Sbjct: 662 STDASVLQELAEEGHVLPTLLMEYREIFKLEGTYIDALPRLVHPRDRRLHTSYSQTVSAT 721 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P + +R + G +L+ Sbjct: 722 GRLSSHDPNLQNIPIR------------------------RELGRDIRRGFVPREGWRLL 757 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA ++ + + AF G DI+ T A F P++ V+ E RA K + Sbjct: 758 SADYSQIELRVLAHLSADPAFVSAFKAGGDIHRQTAAIIFGVPLEDVTSEMRARAKTINF 817 Query: 438 ALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 A Y GA + + ++ + + F D Sbjct: 818 ATIYGQGAHALSRQLRITNAEAKAFIETYFERFAGVRGFLDQCVVDARARGYVETLFKRR 877 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + ++ A + G+A +L+K A + Sbjct: 878 RYIPELKERNFNIRAFGERVAQNAPIQGSAADLIKIAMINVRNAI 922 >gi|329122862|ref|ZP_08251434.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] gi|327472126|gb|EGF17564.1| DNA-directed DNA polymerase I [Haemophilus aegyptius ATCC 11116] Length = 930 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 96/532 (18%), Positives = 181/532 (34%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + N F+ +F + GI++ + T +L+ T LA Sbjct: 409 IKPILENPNSHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 574 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 632 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 686 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 727 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A + + Sbjct: 728 SAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 787 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + + Q S F +A++ + + A+ Sbjct: 788 QKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 848 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899 >gi|117618452|ref|YP_854729.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559859|gb|ABK36807.1| DNA polymerase I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 917 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 93/557 (16%), Positives = 180/557 (32%), Gaps = 95/557 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + PV+L ++ + L L D + V N ++R + GI+ Sbjct: 368 AAYVPFGHDYLGAPVQL----TEAVVLGKLKPLLEDPARLKVGQNLKYDRNVLLNH-GIE 422 Query: 88 IPSKRWICTSVLARTNGLPSS-LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + T + + +S LA + T E I Sbjct: 423 LQGIAY-DTMLESYVLNSTASRHDMDSLARRYLNAETISFE-----------EIAGKGVK 470 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTIN 195 N ++ + Y D + T L + L S+ E L + + Sbjct: 471 QLTFNQIEL-EQAAPYAAEDADITLRLHQALWGKLSAEPGLAKVFSEIELPLLPVLARME 529 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G I+ L+ + + I +L++ +L S L LF G+ ++ Sbjct: 530 RLGTTIEPKLLHQQSQEIEVRLAELEKQAHELAGQEFNLS-SPKQLGEILFTKLGLPIIK 588 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309 + S + +LA+ L +L + KL + L + GR+ + Sbjct: 589 KTPKGAPSTAEE-VLAELAETYELPQLLMEHRGLAKLKSTYTDKLPLMIKPQTGRVHTSY 647 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P +R I Sbjct: 648 -HQAVAATGRLSSTDPNLQNIP------------------------VRNEQGRRIRQAFI 682 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G KLV AD + IE R++A ++G+ + AFA G+DI+ T A+ F ++ V+ + R Sbjct: 683 PCAGYKLVAADYSQIELRIMAHLSGDKGLLTAFAEGKDIHKATAAEVFGVALEAVTSDMR 742 Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------- 475 K + L Y AK + + + + + + Sbjct: 743 RSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERYPGVLEYMERTRQQADAQGY 802 Query: 476 -----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------ 518 +S + ++ A+ + GTA +++K+A + Sbjct: 803 VETLFGRRLYLPDIKSRNAGLRKAAERAAINAPMQGTAADIIKRAMINVDGWIRGIEDQS 862 Query: 519 -QLWKDLTEGFACVVQE 534 ++ + + ++E Sbjct: 863 IRMLMQVHDELVFEIRE 879 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 29/182 (15%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISARR 542 A ++ G A E V R + + L K L G A + R Sbjct: 724 ATAAEVFGVALEAVTSDMRRSAKAINFGLIYGMSAFGLAKQLGIGRAEAQKYMDLYFERY 783 Query: 543 VANVPRLVMRRHKRDVHIVLPS--SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 + + R + D + + RRL D+K + R Sbjct: 784 PGVLEYMERTRQQADAQGYVETLFGRRLYLPDIKSRNA---GLRKAAERAAINAP----- 835 Query: 601 IVQAISRDILCEGMKN-------ATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 +Q + DI+ M N +++ VHDE+V E + + + M+ Sbjct: 836 -MQGTAADIIKRAMINVDGWIRGIEDQSIRMLMQVHDELVFEIREEKLEEYIAIIKEKMS 894 Query: 653 KN 654 Sbjct: 895 AA 896 >gi|54310556|ref|YP_131576.1| DNA polymerase I [Photobacterium profundum SS9] gi|46914999|emb|CAG21774.1| putative DNA polymerase I [Photobacterium profundum SS9] Length = 937 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 110/587 (18%), Positives = 191/587 (32%), Gaps = 109/587 (18%) Query: 7 DIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET L V +A A+ + D P +L ++ + + L L Sbjct: 363 DTETDSLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQL----DRDWVLAQLKPLLE 418 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 D V N F+ + + DI + ++L N + LAL + E Sbjct: 419 DPAQNKVGQNLKFDMSILARY---DINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLE 475 Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 H E GK F + +D G Y D + T L Sbjct: 476 HKNISFEEVAGKGKKQLTFNQIDLDVA----------------GPYAAEDADITLRLHNL 519 Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G ID L+ IA +L+ Sbjct: 520 LNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDELETKAY 579 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + S L+ LF G+ ++ + S + + +LA D L ++ Sbjct: 580 EIAEQEFNLS-SPKQLQAILFEKMGLPILKKTPSGAPST-NEEVLQELALDYPLPKILLE 637 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+ GR+ + + TGR S QN+P Sbjct: 638 YRGLAKLKSTYTDKLPKMVNPSTGRVHTSY-HQAVTATGRLSSSDPNLQNIP-------- 688 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G K++ D + IE R++A ++G+ + Sbjct: 689 ----------------VRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALL 732 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHC 455 +AF G+DI+ T A+ PI+ V+ EQR K + L Y A + Sbjct: 733 EAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEA 792 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + + + +S + + A+ Sbjct: 793 QDYMNVYFERYPGVLEYMESTRIHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAI 852 Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534 + GTA +++K+A + G ++L + + VQE Sbjct: 853 NAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQE 899 >gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40] gi|89949322|gb|ABD79337.1| DNA polymerase I [Saccharophagus degradans 2-40] Length = 926 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 100/567 (17%), Positives = 184/567 (32%), Gaps = 98/567 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + P +L + + L L DE V V N ++ + GI Sbjct: 378 AAYVPFGHDYLGAPEQL----SEEQVLGKLKPLLEDENVKKVGQNLKYDASVLANH-GIA 432 Query: 88 IPSKRWICTSVLART-NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + T + + N + LAL H E I Sbjct: 433 LQGIAF-DTMLESYVVNSTANRHDMDTLALAHLGHTNISFE-----------EIAGKGAK 480 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLDQTIN 195 N +Q Y D + T L + L P + E L + + Sbjct: 481 QLTFNQIQL-DQAAPYAAEDADITLRLHQALWPQVEAVEGIKSLFENVELPLVPVLSKVE 539 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ID ++ + +A + +++ + +L + L + LF GI ++ Sbjct: 540 RTGALIDATILGQQSAELAADLERIQREAWELAGEEFNLA-SPKQLGVILFEKLGIPVIK 598 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTL 309 ++ T + + +LA D L L + KL + L ++ GR+ + Sbjct: 599 KTK-TGAPSTAEEVLQELALDYPLPALLLEQRGLAKLKSTYTDKLPTMINPHTGRVHTSY 657 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P + + VR I Sbjct: 658 N-QAVTATGRLSSTDPNLQNIPIKTEA------------------------GRRVRKAFI 692 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A G ++V AD + IE R++A ++G++ AF G D++ T A+ F T ++ V+ EQR Sbjct: 693 APEGYRIVAADYSQIELRIMAHLSGDEGLTNAFNQGLDVHSATAAEVFGTSVESVTPEQR 752 Query: 430 AIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAESHHLW 484 K + L Y A+ + + + ED H + Sbjct: 753 RSAKAINFGLIYGMSAFGLARQLHIGRNDAQRYIDTYFDRYPGVARYMEDIRVFAKEHGY 812 Query: 485 M--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKH---------- 514 + + A+ + G+A +++KKA Sbjct: 813 VETLMGRRLYLPEINASNGMRRQAAERTAINAPMQGSAADIIKKAMIDVDKWLSTLKVDA 872 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISAR 541 + ++Q+ +L A E + + Sbjct: 873 KMIMQVHDELVLEVAEDQIEPVTATLC 899 >gi|332139424|ref|YP_004425162.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] gi|327549446|gb|AEA96164.1| DNA polymerase I [Alteromonas macleodii str. 'Deep ecotype'] Length = 930 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 103/602 (17%), Positives = 198/602 (32%), Gaps = 109/602 (18%) Query: 4 LFIDIETRSPQ--PLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + D ET S VGV E+ A+ + D P +L + + L Sbjct: 353 IAFDTETTSLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPTQL----SREFVLDALKP 408 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALN 117 L ++ V + +++ + DI ++L N LAL Sbjct: 409 ILESSNIIKVGQHIKYDKNVLANY---DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 465 Query: 118 FSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + H T + GK F + ++ + G Y D + T L Sbjct: 466 YLGHKTIHFEDIAGKGAKQLTFNQIAL----------------EEAGPYAAEDADITLRL 509 Query: 174 FKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + L D E L + + G ID + + + +A +L++ Sbjct: 510 HNTIWAKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLSQQSQDLAARIAELEK 569 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ + + T L+ LF + ++ + S S + +LA + L + Sbjct: 570 EVHEEAGEPF-NLGSTKQLQHILFEKMSLPIIKKTPKGAPST-SEDVLQELALEYPLPKK 627 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 628 IMEYRGLTKLKNTYTDKLPKMINHRTGRVHTSY-HQAITATGRLSSTDPNLQNIPIR--- 683 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR + G K V AD + IE R++A ++G+ Sbjct: 684 ---------------------NEEGRRVRQAFVPRKGNKFVAADYSQIELRIMAHLSGDK 722 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + AFA+G+DI+ T ++ F P+D+V+ EQR K + L Y AK Sbjct: 723 GLLDAFAHGKDIHKATASEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLAKQLNIPR 782 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 + + + + + D ++ + + Sbjct: 783 NEAQKYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAER 842 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEGGSISARRVA 544 A+ + GTA +++K A + + + + + ++E S + Sbjct: 843 AAINAPMQGTAADIIKMAMIKVDDWISKNAADDVTMMMQVHDELVFEIKEDKVDSYVKTI 902 Query: 545 NV 546 N Sbjct: 903 NT 904 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 17/95 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 RRL D+K R +Q + DI+ M Sbjct: 821 GRRLYLPDIKASN---GARRKGAERAAINAP------MQGTAADIIKMAMIKVDDWISKN 871 Query: 619 -KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 + +++ VHDE+V E + S V T+ +LM Sbjct: 872 AADDVTMMMQVHDELVFEIKEDKVDSYVKTINTLM 906 >gi|118591476|ref|ZP_01548873.1| DNA polymerase I [Stappia aggregata IAM 12614] gi|118435804|gb|EAV42448.1| DNA polymerase I [Stappia aggregata IAM 12614] Length = 996 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 96/502 (19%), Positives = 168/502 (33%), Gaps = 91/502 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L D +V+ +A N ++ ++ + GIDI G + + Sbjct: 468 DVLKPMLEDRSVLKIAQNLKYDWLVMTRY-GIDITPFDDTMLLSYTVDAGKGGNGMDELS 526 Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 +E GK++I F K +ID Y D + T Sbjct: 527 ERWLDHKPIPFKEICGSGKSMIT-FDKVAIDKA----------------TAYAAEDADVT 569 Query: 171 RELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L+ L P ER + + + RG +D ++ +L AQ Sbjct: 570 LRLWLILKPRLASERMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGEFAQGMAGK 629 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LIL 279 + +I +L + L LF G+ ++ T S + LA + L Sbjct: 630 ESEIYELAGENF-NIGSPKQLGDILFGKMGLPGGKKTK-TGAWSTSAQVLEDLAAEGHEL 687 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 S + KL + L ++ GR+ + A+ TGR S QN+P + Sbjct: 688 PSRIVSWRQLSKLKSTYTDALPGYINPETGRVHTSYAL-AATTTGRLSSSEPNLQNIPVR 746 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G KL+ AD + IE RVLA +A Sbjct: 747 T------------------------EEGRKIRKAFIAEKGHKLISADYSQIELRVLAHMA 782 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 KAF +G DI+ T ++ F TPI+ + R K + + Y G A Sbjct: 783 DIPQLKKAFDDGLDIHAMTASEMFGTPIEGMDPMVRRRAKAINFGIIYGISAFGLANQLG 842 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 G ++ + + + + + + + + M+ Sbjct: 843 ISRGEAGDYIKTYFERFPGIKDYMEAIKKQVHANGYVTTIFGRKAHYPEVNTKNPNMRAF 902 Query: 489 YPEFAVKDKLIGTACELVKKAW 510 Y A+ + G+A +++++A Sbjct: 903 YERAAINAPIQGSAADILRRAM 924 >gi|91794967|ref|YP_564618.1| DNA polymerase I [Shewanella denitrificans OS217] gi|91716969|gb|ABE56895.1| DNA polymerase I [Shewanella denitrificans OS217] Length = 921 Score = 288 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 108/602 (17%), Positives = 202/602 (33%), Gaps = 111/602 (18%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + ID ET S L + A +A A+ + D P + D L Sbjct: 342 KLIAIDTETTSLNYMDAKLVGISFAIEAGEAAYLPLAHDYLDAPSQ-IDMA---TALEKL 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLAL 116 L + V N ++ +F +GI + + T + + N + S LAL Sbjct: 398 RPLLESDNPAKVGQNLKYDISIFAN-VGIKLKGVHF-DTMLESYVFNSVASRHDMDGLAL 455 Query: 117 NFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H + GK F + +D+ Y D + T Sbjct: 456 KYLGHKNISFEDVAGKGAKQLTFNQIDLDTAA----------------PYAAEDADITLR 499 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L P ++ E L + I +G ID L+ + + +AQ+ KL+ Sbjct: 500 LHQHLWPRLEKEPELAQVFTELELPLIQVLSDIERQGVLIDPMLLSQQSDELAQKIDKLE 559 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + ++ + L++ F ++ + S + +LA D L + Sbjct: 560 LEAYEIAGEKF-NLGSPKQLQVLFFEKLAYPIIKKTPKGAPSTAEE-VLVELALDYPLPK 617 Query: 282 LASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + ++ KL + L V+ + GR+ + A+ TGR S QN+P + Sbjct: 618 IILAHRSLAKLKSTYTDKLPLMVNGTTGRVHTSYHQANAA-TGRLSSSDPNLQNIPIRT- 675 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G+K++ AD + IE R++A ++ + Sbjct: 676 -----------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQD 712 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + AFA G+DI+ T A+ F ++V+ EQR K + L Y AK Sbjct: 713 KGLLTAFAEGKDIHRATAAEVFGAHFEEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIP 772 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYP 490 + + + + + +A + + + Sbjct: 773 RNEAQTYIDTYFARYPGVLQYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAE 832 Query: 491 EFAVKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSIS 539 A+ + GTA +++KKA + ++Q+ +L E Sbjct: 833 RAAINAPMQGTAADIIKKAMINIANWIKTETQGEITMIMQVHDELVFEVDEAQAETLKAK 892 Query: 540 AR 541 Sbjct: 893 IC 894 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M N T+ +++ VHDE+V E + ++ +C LM + Sbjct: 841 QGTAADIIKKAMINIANWIKTETQGEITMIMQVHDELVFEVDEAQAETLKAKICLLMAQA 900 >gi|218894596|ref|YP_002443466.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] gi|218774825|emb|CAW30643.1| DNA polymerase I [Pseudomonas aeruginosa LESB58] Length = 913 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 103/599 (17%), Positives = 197/599 (32%), Gaps = 121/599 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 + D ET S A+QA + ++A + + D Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112 L L D + V ++ ++ + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL + H T + GK F + +I + G Y D + Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487 Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L L+D E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276 L+ L + L L+ G+ ++ + T + + + + +LA+ D Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L ++ ++ KL + L E ++ GR+ + + TGR S QN+ Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G KL+ AD + IE R++A Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 +A +D + AF +G D++ T A+ F P++ VS +QR K + L Y AK Sbjct: 701 HLAKDDGLLDAFRHGLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485 + ++ + + +A++ + M Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534 + A+ + GTA +++K+A A + +LQ+ +L + E Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVE 879 >gi|154246319|ref|YP_001417277.1| DNA polymerase I [Xanthobacter autotrophicus Py2] gi|154160404|gb|ABS67620.1| DNA polymerase I [Xanthobacter autotrophicus Py2] Length = 1000 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 106/609 (17%), Positives = 190/609 (31%), Gaps = 111/609 (18%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYA-WDDEPVKLWDRTEQSAMPSDL- 57 L D ET S L V + +A A+ D + +P + Sbjct: 413 LAFDTETNSLDPMQADLVGVSLALSPNEACYIPLAHTGAGDG------LFSEGQLPGQIP 466 Query: 58 ----LQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 + L+ D+ + V HN +++++ + GID+ A G Sbjct: 467 VRDAIAALKGVLEDKGTLKVGHNVKYDQLVLARH-GIDVAPFDCTMCMSYALDAGKNGHG 525 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + L+ E KG + A H Y D + Sbjct: 526 MDELSVLHLGHQPIAFSEVTGK----GKGKVTFDKVALEPATH---------YAAEDADV 572 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L++ L P ER L + + RG ID ++ +L AQ + Sbjct: 573 TLRLWQVLKPRLAAEGRTTVYETLERPLIAVLARMESRGISIDKAMLARLSSEFAQGAAR 632 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---- 275 ++++I +L + + + LF G+ + T + + +LA+ Sbjct: 633 IEDEIAELAGERL-NVGSPKQMGDILFGKMGLPGGTKT-ATGMWSTKATALEELAEAGHK 690 Query: 276 --DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 IL S + L V+ R T A+ TGR S QN+P + Sbjct: 691 LPQKILEWRQLSKLRSTYTDALPNFVNPQTRRVHTSYALAATTTGRLSSSDPNLQNIPIR 750 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G LV AD + IE R+LA IA Sbjct: 751 T------------------------EEGRRIRRAFVAEEGNLLVSADYSQIELRLLAEIA 786 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 AF G DI+ T ++ FN P+ + E R K + + Y G A Sbjct: 787 EIPALRTAFTEGLDIHAMTASEMFNVPVKDMPAEVRRRAKAINFGIIYGISAFGLANQLG 846 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 G ++++ + + + + + + + ++ Sbjct: 847 IPREEAGQYIKRYFERFPGIRDYMEETKTFCREHGYVETLFGRRCHYPEIAAKNPSIRAF 906 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSI 538 A+ +L GTA +++++A +LQ+ +L + Sbjct: 907 NERAAINARLQGTAADIIRRAMIRMEPALEKAKLSARMLLQVHDELVFEVPEGEADATIP 966 Query: 539 SARRVANVP 547 R+ Sbjct: 967 VVRQCMETA 975 >gi|294678002|ref|YP_003578617.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] gi|294476822|gb|ADE86210.1| DNA polymerase I [Rhodobacter capsulatus SB 1003] Length = 950 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 109/601 (18%), Positives = 199/601 (33%), Gaps = 96/601 (15%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD--- 56 L +D ET S L V + +A + + + MP D Sbjct: 360 LAVDTETTSLDEMQAELVGVSLSTGPGRACYIPLGHTTGGDDLFGTTALAPGQMPMDEAL 419 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L DE+++ + N ++ +F + GI + A +GL +A Sbjct: 420 AILKPVLEDESLLKIGQNMKYDWKIFARH-GIRVAPFDDTMLMSYAMFSGLHGHGMDALS 478 Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSP-PYDCTRANHV-QAWQLFGEYCKRDVE 168 ++E GKA I F K +D Y A + W F R Sbjct: 479 EEYLRHRPIPIKELIGTGKAQIT-FDKVPLDKATAYAAEDAEITYRLWAAFKPQLHRAQV 537 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 T +++ L ER L + + G ++D ++ ++ + AQ L+E+I L Sbjct: 538 TT--VYETL------ERPLVPVLAEMEMAGVKVDPTVLARMSNVFAQRMAGLEEEIQALA 589 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT-----------LKSILSHSNITQLAKDL 277 + L LF G+ + + + ++ H LA + Sbjct: 590 GQSF-NVGSPKQLGEILFDKLGVPGGEKGKTGAYATGADVLEDITTMEDHKQAADLAAKV 648 Query: 278 ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + R + + + L V+ D GR+ + GA+ TGR + QN+P + Sbjct: 649 LDWRQIAKLKST-YTDALQTHVNPDTGRVHTSYSIAGAN-TGRLASTDPNLQNIPVRS-- 704 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R +A+ G ++V D + IE R+LA +A Sbjct: 705 ----------------------DEGRRIREAFVATPGHRIVSLDYSQIELRILAHVANLP 742 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 AFA G DI+ T ++ F P++ + R K + + Y G A+ + Sbjct: 743 EMKAAFARGIDIHAMTASEMFGVPVEGMDPMVRRRAKAINFGVIYGISGFGLARNLRIPR 802 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEF 492 S + ++ + + D A + Sbjct: 803 SEAQGFIDRYFERFPGIRAYMDETVAFAKANGFVQTLFGRKIHTPEINAKGPGAGFAKRA 862 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVA 544 A+ + G A +++++A + LQ+ +L A + +AR V Sbjct: 863 AINAPIQGAAADIIRRAMIRMPAAIAHLPAKMLLQVHDELIFEVAESAVDPLIATARAVM 922 Query: 545 N 545 Sbjct: 923 E 923 >gi|299066168|emb|CBJ37351.1| DNA polymerase I (POL I) [Ralstonia solanacearum CMR15] Length = 959 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 105/589 (17%), Positives = 193/589 (32%), Gaps = 96/589 (16%) Query: 6 IDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQY 60 +D ET S P+ VG+ E A V + + A+ + + + Sbjct: 373 LDTETTSIDPMQAQLVGLSLSVEPGQACYIPVAHRGPDVSGLEAAGQLAREAVLARMKPW 432 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D + V + ++ +F GI + T + + + LA Sbjct: 433 LEDASRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRNHGMDALAERVLH 490 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E C +D + EY D + T L + + P Sbjct: 491 LKTITYE------EVCGKGASQIGFDEVPLD------RATEYAAEDADITLRLHRAMYPK 538 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++ Q + G ID + + + + Q +L++ L Sbjct: 539 VAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDAERLARQSTGLGQRLLELEQQAYALAG 598 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + F + ++ + S + +LA+D L +L + Sbjct: 599 QPF-NLNSPKQIGEIFFTQLKLPVIKKTASGAPST-DEEVLQKLAEDYPLPKLLLDFRGL 656 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 657 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 706 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G +V AD + IE R++A ++ ++ ++AF Sbjct: 707 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLLRAFR 751 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+D++ T A+ F +V+ EQR KV+ L Y A L + Sbjct: 752 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 811 Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498 ++ + + D + +H LW+ + A+ + Sbjct: 812 DRYFARYPGVARYMDETRLVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 871 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 GTA +L+K + A +Q W D G + G + R+V V Sbjct: 872 QGTAADLIKLSMLA-----VQDWLD---GSPSTGKPGAPMRTRQVMQVH 912 Score = 44.0 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 38/117 (32%), Gaps = 26/117 (22%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT------ 618 RRL D+ G A R +Q + D++ M Sbjct: 843 GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMLAVQDWLDGS 893 Query: 619 ----KNGYDI----VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666 K G + V+ VHDE+V E P V L LM A +PL AE Sbjct: 894 PSTGKPGAPMRTRQVMQVHDELVLEVPQEELSLVRERLPELMCGVA--ALRVPLVAE 948 >gi|88705360|ref|ZP_01103071.1| DNA polymerase I [Congregibacter litoralis KT71] gi|88700450|gb|EAQ97558.1| DNA polymerase I [Congregibacter litoralis KT71] Length = 909 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 103/582 (17%), Positives = 191/582 (32%), Gaps = 116/582 (19%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S + VG+ E+ A+++ P +L ++ A+ + L Sbjct: 336 DTETTSLNYMEADI--VGLSFAVERGEAAYVPLAHSYPGAPAQL----DRDAILAALKPL 389 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS-SLKNACLALNF 118 L D + N ++ + + DI + T + + LAL + Sbjct: 390 LEDPAKPKLGQNLKYDASVLARY---DIHMQGIAFDTMLESYVLDSTGTRHDMDSLALKY 446 Query: 119 ---SEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 S + GK F + I + G Y D E T L Sbjct: 447 LGRSTTHFEDVAGKGAKQITFDQVGI----------------EQAGPYAAEDAEVTLALH 490 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P SD E L + + G +D + + + + + L+E+ Sbjct: 491 ETLWPKLQESAGLASVFSDIELPLVPVLSRMERTGALLDEERLWEQSRELGGRLQALEEE 550 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 L + + L LF + ++ + S + +LA D L +L Sbjct: 551 AHNLAGQVF-NLGSPKQLGQILFEKLELPVIKKTPKGAPSTAEE-VLQELALDYPLPKLL 608 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 609 IEHRGLSKLKSTYTDKLPGMINPRTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT--- 664 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA+ G ++V AD + IE R++A ++ + Sbjct: 665 ---------------------EEGRRIRQAFIAAEGYQVVAADYSQIELRIMAHLSKDAG 703 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 ++AF D++ T A+ F +D VS EQR K + L Y A+ + Sbjct: 704 LLEAFRENLDVHSATAAEVFGVSLDAVSGEQRRKAKAINFGLIYGMSAFGLARQLRLDRG 763 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEF 492 + + + + D +A +H Q Sbjct: 764 EAQRYIDVYFERYPGVREYMDNTRALAHEQGYVETLFGRRLYLPEINVRNKNRQQAAERT 823 Query: 493 AVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 A+ + GTA +++K+A + ++Q+ +L Sbjct: 824 AINAPMQGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDEL 865 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ M + +++ VHDE+V E + V LC M+ Sbjct: 830 QGTAADIIKRAMITVDRWIADDSVDAKMIMQVHDELVLEVAEDQLDPVCDELCKQMSAA 888 >gi|90414265|ref|ZP_01222245.1| DNA polymerase I [Photobacterium profundum 3TCK] gi|90324712|gb|EAS41253.1| DNA polymerase I [Photobacterium profundum 3TCK] Length = 922 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 110/587 (18%), Positives = 191/587 (32%), Gaps = 109/587 (18%) Query: 7 DIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET L V +A A+ + D P +L ++ + + L L Sbjct: 348 DTETDGLDYMTANLVGVSFAVEEGKAAYVPVAHDYLDAPEQL----DRDWVLAQLKPLLE 403 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 D V N F+ + + DI + ++L N + LAL + E Sbjct: 404 DPAQNKVGQNLKFDMSILARY---DINMQGIKYDTMLESYVFNSVVGRHDMDSLALRYLE 460 Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 H E GK F + +D G Y D + T L Sbjct: 461 HKNISFEEVAGKGKKQLTFNQIDLDVA----------------GPYAAEDADITLRLHNL 504 Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G ID L+ IA +L+ Sbjct: 505 LNEKVESDEQLKSVFEDIEMPLVPVLSRIERTGVLIDSMLLSAQSTEIAARLDELETKAY 564 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + S L+ LF G+ ++ + S + + +LA D L ++ Sbjct: 565 EIAEQEFNLS-SPKQLQAILFEKMGLPILKKTPSGAPST-NEEVLQELALDYPLPKILLE 622 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+ GR+ + + TGR S QN+P Sbjct: 623 YRGLAKLKSTYTDKLPKMVNPSTGRVHTSY-HQAVTATGRLSSSDPNLQNIP-------- 673 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G K++ D + IE R++A ++G+ + Sbjct: 674 ----------------VRNAEGRRIRQAFIAPTGYKILAVDYSQIELRIMAHLSGDKALL 717 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----ASHC 455 +AF G+DI+ T A+ PI+ V+ EQR K + L Y A + Sbjct: 718 EAFKQGKDIHAATAAEILGLPIESVTTEQRRRAKAINFGLIYGMSAFGLAKQLGMGRNEA 777 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + + + +S + + A+ Sbjct: 778 QDYMNVYFERYPGVLEYMESTRVHASEQGYVETLFGRRLYLPDIKSRNGIRRKAAERAAI 837 Query: 495 KDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQE 534 + GTA +++K+A + G ++L + + VQE Sbjct: 838 NAPMQGTAADIIKRAMVLVDEWVEQQETGRVRLLMQVHDELVFEVQE 884 >gi|207723739|ref|YP_002254137.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] gi|206588943|emb|CAQ35905.1| dna polymeraseIprotein [Ralstonia solanacearum MolK2] Length = 944 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 112/589 (19%), Positives = 195/589 (33%), Gaps = 96/589 (16%) Query: 6 IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60 ID ET S P+ VG+ + A V D Q A+ + + + Sbjct: 358 IDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSREAVLARMRLW 417 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L DET V + ++ +F GI + T + + + LA Sbjct: 418 LEDETRGKVGQHLKYDAHVFANH-GIALRGI-THDTMLQSYVLASHRNHGMDALAERVLH 475 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E C +D A EY D + T L + L P Sbjct: 476 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 523 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++ Q + G +D + + + + Q L+++ L Sbjct: 524 VAEDDKLRYVYERIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLALEQEAYALAG 583 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + F + +V + S + +LA+D L +L + Sbjct: 584 QPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 641 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 642 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 691 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G +V AD + IE R++A ++G+D ++AF Sbjct: 692 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFR 736 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+D++ T A+ F +V+ EQR KV+ L Y A L + Sbjct: 737 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 796 Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498 ++ + + D + +H LW+ + A+ + Sbjct: 797 DRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 856 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 GTA +L+K + A +Q W + G + G + +R V V Sbjct: 857 QGTAADLIKLSMLA-----VQDWLE---GSPNADKPGTPMRSRLVMQVH 897 >gi|145630606|ref|ZP_01786386.1| DNA polymerase I [Haemophilus influenzae R3021] gi|144983996|gb|EDJ91438.1| DNA polymerase I [Haemophilus influenzae R3021] Length = 743 Score = 287 bits (735), Expect = 3e-75, Method: Composition-based stats. Identities = 96/532 (18%), Positives = 186/532 (34%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 222 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 279 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 280 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 327 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 328 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFIQSNEIATRLTALEKQAY 387 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 388 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 445 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 446 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 498 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 499 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 540 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------A 445 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A Sbjct: 541 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRPDA 600 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAV 494 + + + +QQF ++++ + + + S + + A+ Sbjct: 601 QKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 660 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 661 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 712 >gi|127514642|ref|YP_001095839.1| DNA polymerase I [Shewanella loihica PV-4] gi|126639937|gb|ABO25580.1| DNA polymerase I [Shewanella loihica PV-4] Length = 930 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 100/537 (18%), Positives = 190/537 (35%), Gaps = 96/537 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L + + + L L D +++ V N ++ + +GI Sbjct: 381 AAYLPLAHDYADAPEQL----DSEQVLAKLKPLLEDPSLLKVGQNLKYDMSILAN-VGIA 435 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + N + S LAL + H E GK + F + +++ Sbjct: 436 LKGVAF-DTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQIPLET 494 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 Y D + T L + L P +D E L + Sbjct: 495 AA----------------PYAAEDADITLRLHQHLWPRLQKASELASVFTDIELPLVSIL 538 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G ID L+ + + +A++ +L++ ++ + T L+ F G Sbjct: 539 SQIERQGVLIDSMLLGQQSDELARKIDELEQKAYEIAGEPF-NLGSTKQLQALFFEKLGY 597 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRL 305 ++ + S + +LA D L ++ ++ KL + L V GR+ Sbjct: 598 PVLKKTPKGAPSTAEE-VLVELALDYPLPKIILEHRSLSKLKSTYTDKLPLMVDGKTGRV 656 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + A+ TGR S QN+P + +R Sbjct: 657 HTSYHQAIAA-TGRLSSSEPNLQNIPIRT------------------------EEGRRIR 691 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G+K++ AD + IE R++A ++ + + AFA G+DI+ T A+ F+ +V+ Sbjct: 692 HAFVAPEGRKILAADYSQIELRIMAHLSQDKGLLSAFAEGKDIHRATAAEVFDVDFSEVT 751 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAES 480 EQR K + L Y A+ + + + ED A + Sbjct: 752 SEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQQYIDIYFKRYPGVLKYMEDTRAAAA 811 Query: 481 HHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + A+ + GTA +++KKA Q + Sbjct: 812 EQGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAPMQGTAADIIKKAMINIAQWI 868 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M N T+ +++ VHDE+V E S+ +C LM + Sbjct: 850 QGTAADIIKKAMINIAQWIETETQGEITMIMQVHDELVFEVDADKADSLKLKVCELMAQA 909 >gi|262273193|ref|ZP_06051009.1| DNA polymerase I [Grimontia hollisae CIP 101886] gi|262222771|gb|EEY74080.1| DNA polymerase I [Grimontia hollisae CIP 101886] Length = 931 Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats. Identities = 103/582 (17%), Positives = 196/582 (33%), Gaps = 103/582 (17%) Query: 7 DIET----RSPQPLPKVGVWAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 D ET L + +A AE +A A+ + D P +L ++ + +++ +L Sbjct: 357 DTETDSLDYMEANLVGI-SFAVAEGEAAYLPLAHDYLDAPKQL----DRDWVLAEMKLWL 411 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFS 119 D + V N ++ + + DI + ++L N + LAL + Sbjct: 412 EDAGALKVGQNLKYDASVLARY---DIAMRGIAYDTMLESYVFNSVAGKHDMDSLALRYL 468 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 +H E I N ++ Y D + T L L+ Sbjct: 469 QHQCISFE-----------EIAGKGKKQLTFNQIEL-DQAAPYAAEDADVTLRLHNALMA 516 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E L + + G I +++ K + IA L++++ +L Sbjct: 517 QLNNDEKLKVIFEQYEMPLVPVLSRMERHGVLISAEMLAKQSQEIAVRLDTLEKEVFELA 576 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 S L+ LF G+ +V + S + + +LA D L + Sbjct: 577 GEEFNLS-SPKQLQAILFEKMGLPVVKKTPSGTPST-NEEVLQELALDYPLPKRILEYRG 634 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L + V GR+ + + TGR S QN+P + Sbjct: 635 LAKLKSTYTDKLPKMVKPATGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR--------- 684 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA GK ++ D + IE R++A ++G++ I AF Sbjct: 685 ---------------NEEGRRIRQAFIAPAGKTILAVDYSQIELRIMAHLSGDEALIDAF 729 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+DI+ T A+ I V+ E R K + L Y AK Sbjct: 730 RHGKDIHAATAAEVMGIDISDVTPEMRRRAKAINFGLIYGMSAFGLAKQLGIPRGEAQQY 789 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 + ++ + + + + +S + + A+ Sbjct: 790 MDRYFERYPGVRQYMENTRLQAAEQGYVETIFGRRLHLPEIKSSNAMRRKGAERAAINAP 849 Query: 498 LIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVV 532 + GTA +++K+A + + +G + L + + V Sbjct: 850 MQGTAADIIKRAMILVDAWIQQQPEGRVALIMQVHDELVLEV 891 >gi|254453556|ref|ZP_05066993.1| DNA polymerase I [Octadecabacter antarcticus 238] gi|198267962|gb|EDY92232.1| DNA polymerase I [Octadecabacter antarcticus 238] Length = 928 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 98/541 (18%), Positives = 184/541 (34%), Gaps = 97/541 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D++++ + N ++ +FK+ +GI + A GL + Sbjct: 406 LKPMLEDDSILKIGQNMKYDAKIFKR-VGITVDPIDDTMLMSYAMNAGLNRHSMDVLSEQ 464 Query: 117 NFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + GK+ I F + + + +Y D + T Sbjct: 465 YLGHTPIPIKPLLGAGKSAIT-FDRVPV----------------EEAVKYAAEDADITLR 507 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L++ L P ER L + + G ++D D + ++ AQ+ L++ Sbjct: 508 LWQVLKPQLHSKQVTSVYETMERPLVPVLAKMEMYGIKVDRDTLSRMSNAFAQKMAGLED 567 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ +L G + + LF G++ T K + LA + L Sbjct: 568 ELYELAGGKF-NVGSPAQVGEILFDQMGLEGGKKG-KTGKYATGADILEDLATEHGFPGL 625 Query: 283 ASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L ++ GR+ + GA+ TGR S QN+P + Sbjct: 626 VLDWRQLSKLKSTYTDALQTHINSETGRVHTSYSITGAN-TGRLSSTDPNLQNIPIRT-- 682 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA GK LV D + IE R+LA +A D Sbjct: 683 ----------------------DEGRKIREAFIADEGKVLVALDYSQIELRILAHVANID 720 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 +AF +G DI+ T ++ FN P+D+++ + R K + + Y G A+ + Sbjct: 721 ALKQAFRDGHDIHAMTASEMFNVPLDEMTSDVRRQAKAINFGVIYGISGFGLARNLRIPR 780 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEF 492 + + ++ + T+ D A + + Sbjct: 781 AEAQGFIDRYFERFPGIRTYMDDTVAFAKEHNRVETLFGRKIHTPEINAKGPGAGFAKRA 840 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGGSISARRVA 544 A+ + GTA +++++A + LQ+ +L +AR V Sbjct: 841 AINAPIQGTAADVIRRAMIRMDAAIAHLPAKMLLQVHDELVFEVDKDAAHDLIAAAREVM 900 Query: 545 N 545 Sbjct: 901 E 901 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%) Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + D++ M ++L VHDE+V E + Sbjct: 846 IQGTAADVIRRAMIRMDAAIAHLPAKMLLQVHDELVFEVDKDAAHDL 892 >gi|83746523|ref|ZP_00943574.1| DNA polymerase I [Ralstonia solanacearum UW551] gi|83726854|gb|EAP73981.1| DNA polymerase I [Ralstonia solanacearum UW551] Length = 946 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 112/589 (19%), Positives = 195/589 (33%), Gaps = 96/589 (16%) Query: 6 IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60 ID ET S P+ VG+ + A V D Q A+ + + + Sbjct: 360 IDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSREAVLARMRLW 419 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L DET V + ++ +F GI + T + + + LA Sbjct: 420 LEDETRGKVGQHLKYDAHVFANH-GIALRGI-THDTMLQSYVLASHRNHGMDALAERVLH 477 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E C +D A EY D + T L + L P Sbjct: 478 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 525 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++ Q + G +D + + + + Q L+++ L Sbjct: 526 VAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLALEQEAYALAG 585 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + F + +V + S + +LA+D L +L + Sbjct: 586 QPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 643 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 644 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 693 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G +V AD + IE R++A ++G+D ++AF Sbjct: 694 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFR 738 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+D++ T A+ F +V+ EQR KV+ L Y A L + Sbjct: 739 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 798 Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498 ++ + + D + +H LW+ + A+ + Sbjct: 799 DRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 858 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 GTA +L+K + A +Q W + G + G + +R V V Sbjct: 859 QGTAADLIKLSMLA-----VQDWLE---GSPNADKPGTPMRSRLVMQVH 899 >gi|207743834|ref|YP_002260226.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] gi|206595234|emb|CAQ62161.1| dna polymeraseIprotein [Ralstonia solanacearum IPO1609] Length = 944 Score = 287 bits (734), Expect = 5e-75, Method: Composition-based stats. Identities = 112/589 (19%), Positives = 195/589 (33%), Gaps = 96/589 (16%) Query: 6 IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60 ID ET S P+ VG+ + A V D Q A+ + + + Sbjct: 358 IDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDAPAQLSREAVLARMRLW 417 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L DET V + ++ +F GI + T + + + LA Sbjct: 418 LEDETRGKVGQHLKYDAHVFANH-GIALRGI-THDTMLQSYVLASHRNHGMDALAERVLH 475 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E C +D A EY D + T L + L P Sbjct: 476 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 523 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++ Q + G +D + + + + Q L+++ L Sbjct: 524 VAEDDKLRYVYERIEMPTSIVLQKMERTGVLVDAERLARQSAELGQRLLALEQEAYALAG 583 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + F + +V + S + +LA+D L +L + Sbjct: 584 QPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 641 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 642 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 691 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G +V AD + IE R++A ++G+D ++AF Sbjct: 692 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFR 736 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+D++ T A+ F +V+ EQR KV+ L Y A L + Sbjct: 737 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 796 Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498 ++ + + D + +H LW+ + A+ + Sbjct: 797 DRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 856 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 GTA +L+K + A +Q W + G + G + +R V V Sbjct: 857 QGTAADLIKLSMLA-----VQDWLE---GSPNADKPGTPMRSRLVMQVH 897 >gi|157373118|ref|YP_001481107.1| DNA polymerase I [Serratia proteamaculans 568] gi|157324882|gb|ABV43979.1| DNA polymerase I [Serratia proteamaculans 568] Length = 934 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 103/588 (17%), Positives = 198/588 (33%), Gaps = 97/588 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L +++ + + L L DE + V N F+ L + D Sbjct: 385 AAYLPVAHDYLDAPTQL----DRAHVLATLKPLLEDEKALKVGQNLKFDMSLLARY---D 437 Query: 88 IPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I + ++L + L+ + H T E I Sbjct: 438 ITLRGIAFDTMLESYVLDSVGGRHDMDSLSDRYLGHKTVTFE-----------EIAGKGK 486 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTI 194 N + + Y D + T +L + P + E L + I Sbjct: 487 KQLTFNQIAL-EQAAPYAAEDADVTLQLHLAMWPQLKESAELLTVFNQIEMPLLPVLSHI 545 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G ID ++ + + +L+ +L + + T L+ L+ + ++ Sbjct: 546 ERTGVLIDQSILATHSIELTKRLAELEIQAHELAEEPFNLA-STKQLQAILYEKQKLPIL 604 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGT 308 + G S + + +LA D L ++ + KL + L ++ GR+ + Sbjct: 605 KKTPGGAPST-NEEVLAELALDYPLPKVILEYRGLAKLKTTYTDKLPLMINPVSGRVHTS 663 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + TGR S QN+P +R Sbjct: 664 Y-HQAVTATGRLSSSDPNLQNIP------------------------VRNDEGRRIRQAF 698 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 IA G ++V AD + IE R++A ++ ++ +KAFA GEDI+ T A+ F P+DKV+ EQ Sbjct: 699 IAPEGYRIVAADYSQIELRIMAHLSQDEGLLKAFAAGEDIHRATAAEVFGLPLDKVTNEQ 758 Query: 429 RAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--- 481 R K + L Y A+ + + + + + + ++ Sbjct: 759 RRSAKAINFGLIYGMSAFGLARQLGIPRGEAQRYMDLYFERYPGVLEYMERTRQQAASQG 818 Query: 482 ------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + + A+ + GTA +++K+A + W Sbjct: 819 YVSTLDGRRLYLPDVSSSNGMRRKAAERAAINAPMQGTAADIIKRAMIE-----VDAWLQ 873 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 E +V+ + V V V+ + + ++ +S L Sbjct: 874 AQE--KPLVRMIMQVHDELVFEVHESVLEESNQRIRELMENSMALAVP 919 >gi|152994321|ref|YP_001339156.1| DNA polymerase I [Marinomonas sp. MWYL1] gi|150835245|gb|ABR69221.1| DNA polymerase I [Marinomonas sp. MWYL1] Length = 916 Score = 287 bits (733), Expect = 5e-75, Method: Composition-based stats. Identities = 104/592 (17%), Positives = 204/592 (34%), Gaps = 105/592 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + VG+ E A+ ++ P +L ++ + L +L Sbjct: 344 DTETTSLNYMAAELVGLSFSVEAGEAAYVPVAHDYEGAPEQL----DRDWVLEQLKPWLE 399 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 D++ V + ++ + I + + T + + N + S LA F H Sbjct: 400 DDSKAKVGQHLKYDANVLNNY-QITLRGIAY-DTMLESYVYNSVSSRHDMNTLASKFLGH 457 Query: 122 LT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + GK + F + ++ + Y D + T L + + Sbjct: 458 TCVSFEDIAGKGAKQKTFNQIDLEVAAF----------------YAAEDADITLRLHQAI 501 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P D E L + + G ID +L+ IA + ++L+ + Sbjct: 502 WPKIETTPELVSIFKDIECPLIPVLAKMEQTGALIDPELLHAQSSEIAAKLQELEIKAHE 561 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 S L++ LF G+ ++ + S + + +LA+D L RL Sbjct: 562 EAGESFNLS-SPKQLQVILFEKQGLPVIKKTPKGQPST-AEPILQELAQDYELPRLIMEH 619 Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL + L E + GR+ + + TGR S QN+P + Sbjct: 620 RSLSKLKSTYTDKLPEMIQKTGRIHTSY-HQAITATGRLSSTDPNLQNIPIRS------- 671 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G KLV AD + +E R++A ++ + + A Sbjct: 672 -----------------AEGRRIRQAFIAPKGYKLVAADYSQVELRIMAHLSQDSGLLDA 714 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F D++ T A+ F +D+V+ EQR K + L Y AK G Sbjct: 715 FTKDADVHKATAAEVFEVSLDEVTTEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAGK 774 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 ++++ + + + ++ + M+ A+ Sbjct: 775 YIKRYFERYPGVQQYMENTREGAKEKGYVETIYGRRLYLPDIKAKNAMMRQAAERTAINA 834 Query: 497 KLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + G+A +++K+A W +++ + + V E +A++ Sbjct: 835 PMQGSAADIIKRAMIKMHDWLQGTDLDVKMIMQVHDELIFEVAEKDLEAAQK 886 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 33/94 (35%), Gaps = 16/94 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNAT 618 RRL D+K + + A R +Q + DI+ M T Sbjct: 808 GRRLYLPDIKAKNAMMRQAA---ERTAINAP------MQGSAADIIKRAMIKMHDWLQGT 858 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 +++ VHDE++ E + + + +M Sbjct: 859 DLDVKMIMQVHDELIFEVAEKDLEAAQKKIVDIM 892 >gi|90415433|ref|ZP_01223367.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] gi|90332756|gb|EAS47926.1| putative DNA polymerase I [marine gamma proteobacterium HTCC2207] Length = 926 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 103/591 (17%), Positives = 199/591 (33%), Gaps = 104/591 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + P +L + L YL D V N ++ + + GI Sbjct: 378 ACYIPFAHDYMGAPEQL----QPEFALEKLKPYLEDPAFPKVGQNLKYDMSVLAQH-GIS 432 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTK---MEEGKALIAR-FCKGSIDS 142 + + T + + + S LALN+ T GK F + ++D Sbjct: 433 LRGITF-DTMLESYVLDSVASRHDMDSLALNYLGEETIKFADVAGKGAAQLTFNQVALD- 490 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 G Y D + T L + L P + E L + Sbjct: 491 ---------------QAGPYAAEDADITLRLHQTLWPRVAAEPTLTKVFEEIELPLVPVL 535 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G +D L+ + + ++ +L+ + +L + L LF I Sbjct: 536 SRIERTGALVDDTLLFQQSQELSARLGELETEAWELAGQQFNLA-SPKQLGEILFEKLQI 594 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + +LA D L ++ + KL + L ++S GR+ Sbjct: 595 PVLKKTAKGAPST-KEEVLQELALDYPLPKVLLEHRGLAKLKSTYTDKLPTMINSVTGRI 653 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + G + TGR S QN+P + VR Sbjct: 654 HTSYHQSG-TATGRLSSSDPNLQNIPIRS------------------------AEGRRVR 688 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A+ G KLV AD + IE R++A ++ + + AF+ G+DI+ T A+ F ++V+ Sbjct: 689 QAFVAAPGCKLVAADYSQIELRIMAHLSEDPSLLAAFSAGQDIHRATAAEVFGVENEEVT 748 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 +QR K + L Y A+ ++ + + + Sbjct: 749 IDQRRSAKAINFGLIYGMSAFGLARQLGINRKQAAEYIELYFTRYPGVQNYMNNIRHSAA 808 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + + + A+ + GTA +++K A H Sbjct: 809 EQGFVETVFGRRLYLPEINASNGMRRQAAERTAINAPMQGTAADIIKLAMINVHN----- 863 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 W + ++ + ++ + V VP M ++ ++ ++ S+ L+ Sbjct: 864 WLETSDLTSKII---MQVHDELVLEVPESEMEEVQKGLNDLMESAAELLVP 911 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 18/122 (14%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGK 596 V N + + RRL + + N Q R Sbjct: 791 TRYPGVQNYMNNIRHSAAEQGFVETVFGRRLYLP----EINASNGMRRQAAERTAINAP- 845 Query: 597 LTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 +Q + DI+ M N I++ VHDE+V E P++ V L Sbjct: 846 -----MQGTAADIIKLAMINVHNWLETSDLTSKIIMQVHDELVLEVPESEMEEVQKGLND 900 Query: 650 LM 651 LM Sbjct: 901 LM 902 >gi|91774714|ref|YP_544470.1| DNA polymerase I [Methylobacillus flagellatus KT] gi|91708701|gb|ABE48629.1| DNA polymerase I [Methylobacillus flagellatus KT] Length = 910 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 108/599 (18%), Positives = 195/599 (32%), Gaps = 109/599 (18%) Query: 5 FIDIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S P+ VG+ E +A A+ + P +L D T A L Sbjct: 336 ALDTETTSLDPMQAKLVGMSFSVEAGKAAYVPLAHDYTGAPQQL-DFT---AALRQLRPM 391 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L D ++ + N +++ + GI + T + + + LA+ Sbjct: 392 LEDASIPKLGQNLKYDKHVLANH-GIALNGI-THDTLLQSYVLESHRTHGMDDLAMRHLG 449 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E+ GK F + SI++ T +L + Sbjct: 450 VQTVTYEQIAGKGAKQVPFSQISIETAAEYAAEDAD----------------ITLQLHQA 493 Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P + E L + TI G ID ++ I Q+ L++ Sbjct: 494 LYPQIEADDKLAFVYREIEMPLLDILYTIERNGVLIDQAMLQAQSHEIGQKLIDLEQQAY 553 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + + L+ LF GI + + S + +LA D L ++ Sbjct: 554 DIAGQPF-NLGSPKQLQEILFGKLGIKPLKKTPSGAPST-DEDVLQELALDYPLPKVLLE 611 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L ++ GR+ + + TGR + QN+P + Sbjct: 612 YRGLAKLKSTYTDKLPRMINPATGRVHTSYS-QAVAITGRLASSDPNLQNIPVRT----- 665 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G ++ AD + IE R++A ++ ++ + Sbjct: 666 -------------------AEGRRIREAFIAPPGASIISADYSQIELRIMAHLSQDEGLL 706 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AFA GEDI+ T A+ F P D+VS EQR KV+ L Y A+ Sbjct: 707 SAFAKGEDIHRATAAEIFGVPRDEVSSEQRRYAKVINFGLIYGMSAFGLAQNLNIERGAA 766 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAV 494 + ++ + + + + + A+ Sbjct: 767 QNYIDRYFARYPGVREYMQNTRMLAKEQGYVETFFGRRLWVPEINSPNGMRRAGAERAAI 826 Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +L+K A A + ++Q+ +L E + ++ Sbjct: 827 NAPMQGTAADLIKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDAELELVQQTLPQL 885 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + D++ M I++ VHDE+V E PD V L LM Sbjct: 831 QGTAADLIKLAMIAVDRWLREHNLNSKIIMQVHDELVLEVPDAELELVQQTLPQLM 886 >gi|126666558|ref|ZP_01737536.1| DNA polymerase I [Marinobacter sp. ELB17] gi|126628946|gb|EAZ99565.1| DNA polymerase I [Marinobacter sp. ELB17] Length = 926 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 100/565 (17%), Positives = 192/565 (33%), Gaps = 94/565 (16%) Query: 7 DIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + + VGV + + + P +L ++ + + L L Sbjct: 352 DTETTSLRYMAAEVVGVSFAVQPFEAAYVPFCHDYMGAPEQL----DRDTVLAQLKPLLE 407 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNG-LPSSLKNACLALNFSE 120 V N +++ + DI + T V + + S LAL++ Sbjct: 408 SPDHKKVGQNLKYDKNVLANH---DICLEGIAEDTMVQSYVLNSVSSRHNMDALALHYLG 464 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E + N ++ G Y D + T L + L P Sbjct: 465 EETTTFES-----------LAGKGAKQLTFNQLEL-DKAGPYAAEDADITLRLHQALRPQ 512 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 D + L + + RG I + + + +A+ +L+ + Sbjct: 513 LAATGKLQSVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAELETAAYEAAG 572 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L++ + G+ ++ + S + + +LA L RL ++ Sbjct: 573 ETF-NLGSPKQLQVIFYEKLGLPVLKKTPKGAPST-AEPVLQELAHRHELPRLLLEHRSL 630 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL +TL E + GR+ + + TGR S QN+P + Sbjct: 631 SKLKSTYTDTLPELIHHRTGRVHTSY-HQAVTATGRLSSSEPNLQNIPIRS--------- 680 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G KL+ AD + IE R++A ++ + + AFA Sbjct: 681 ---------------EQGRRIRQAFVAEKGYKLLAADYSQIELRIMAHLSEDKGLLTAFA 725 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 GEDI+ T A+ F +++V+ +QR K + L Y A+ + Sbjct: 726 KGEDIHKATAAEVFGVTLEEVNTDQRRSAKAINFGLIYGMSAFGLARQLDVERKVAQQYI 785 Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498 ++ + T+ D + ++H + +Q A+ + Sbjct: 786 DRYFERYPGVLTYMDNIRKQAHEDGYVETLFGRRLYLPEINTRNKQLQQAAERTAINAPM 845 Query: 499 IGTACELVKKAWRAKHQGVLQLWKD 523 GTA +++K A + +L + D Sbjct: 846 QGTAADIIKLAMIEVERWLLAEYPD 870 >gi|90581061|ref|ZP_01236861.1| DNA polymerase I [Vibrio angustum S14] gi|90437757|gb|EAS62948.1| DNA polymerase I [Vibrio angustum S14] Length = 923 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 100/563 (17%), Positives = 198/563 (35%), Gaps = 103/563 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + L L D + N F+ + + GI+ Sbjct: 374 AAYVPVAHDYLDAPAQL----DRDWVLEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIE 428 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + N + LAL + EH E GK F + + Sbjct: 429 MQGIVF-DTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQIDL-- 485 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + G Y D + T L L P + E L + Sbjct: 486 --------------EQAGPYAAEDADITLRLHNTLYPKVEADDKLNHVFETIEMPLVPVL 531 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G +D L+ IA ++++ ++ + S L+ LF G+ Sbjct: 532 SRMERTGVYVDSMLLGAQSTEIAARLDEIEKKAFEIAEQEFNLS-SPKQLQAILFEKMGL 590 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L +L + KL + L + V+ GR+ Sbjct: 591 PVLKKTPSGTPST-NEEVLQELALDYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRV 649 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 650 HTSY-HQAVTATGRLSSSDPNLQNIP------------------------VRNEEGRRIR 684 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ + I++VS Sbjct: 685 QAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDIEEVS 744 Query: 426 KEQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTST 471 EQR K + L Y A+ + + + ++ ++ ++ ++ Sbjct: 745 SEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYMNVYFERYPGVLEYMESTRNAAS 804 Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + +S + + A+ + GTA +++K A A Sbjct: 805 EQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKLAMIAVDGWVQQQ 864 Query: 515 -QGVLQLWKDLTEGFACVVQEGG 536 +G ++L + + V+E Sbjct: 865 PEGNVRLLMQVHDELVFEVKESA 887 >gi|212637750|ref|YP_002314275.1| DNA polymerase A [Shewanella piezotolerans WP3] gi|212559234|gb|ACJ31688.1| DNA polymerase A [Shewanella piezotolerans WP3] Length = 916 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 106/560 (18%), Positives = 198/560 (35%), Gaps = 100/560 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + ID ET S L + A +A ++ + D P +L +++ + L Sbjct: 339 IAIDTETTSLNYMEAELVGISFAVEAGKAAYLPLSHDYVDAPEQL----DKALVFEKLTP 394 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L +E + V N ++ +F GI + ++ T + + N + S LAL + Sbjct: 395 LLENEAIKKVGQNLKYDISIFANA-GIKLKGVQF-DTMLESYVFNSVASKHNMDDLALKY 452 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 453 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 496 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P +D E L + TI +G ID L+ + E +A++ L Sbjct: 497 QHLWPRLEKLPQLASVFTDIELPLIDILSTIERQGVLIDSMLLGQQSEELARKIDDLQTK 556 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ + L+ F G ++ + S + +LA D L ++ Sbjct: 557 AHEIAGQPFNLA-SPKQLQELFFEKLGYPIIKKTPKGAPSTAEE-VLVELALDYPLPKII 614 Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V++ GR+ + A+ TGR S QN+P + Sbjct: 615 LEHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 670 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G+K++ AD + IE R++A ++ + Sbjct: 671 ---------------------EEGRRIRHAFIAPEGRKILAADYSQIELRIMAHLSQDKG 709 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFA G+DI+ T A+ F+ +V+ +QR K + L Y AK + Sbjct: 710 LLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRA 769 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + + +A + + + Sbjct: 770 EAQRYIDTYFKRYPGVLNYMEETRAIATDLGYVSTLFGRRLYLPAIKDRNAMRRQAAERA 829 Query: 493 AVKDKLIGTACELVKKAWRA 512 A+ + GTA +++KKA Sbjct: 830 AINAPMQGTAADIIKKAMIN 849 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M N T +++ VHDE+V E S+ +C LM Sbjct: 836 QGTAADIIKKAMINVAKWIETETNGEITMIMQVHDELVFEVDADKADSLQVKICELMAAA 895 >gi|120553478|ref|YP_957829.1| DNA polymerase I [Marinobacter aquaeolei VT8] gi|120323327|gb|ABM17642.1| DNA polymerase I [Marinobacter aquaeolei VT8] Length = 908 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 100/566 (17%), Positives = 190/566 (33%), Gaps = 114/566 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56 D ET S Y + A I ++A + ++ Sbjct: 334 DTETTSL---------RYMD-AEIVGVSFAVEPGKAAYVPLGHDYMGAPEQLDRDSVLEQ 383 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNG-LPSSLKNACL 114 L L D V N +++ + DI + T V + + + L Sbjct: 384 LKPLLEDPKHKKVGQNLKYDKNVLANH---DIQLEGIAEDTMVESYVLNSVGTRHDMDSL 440 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + + T E GK F + ++S G Y D + T Sbjct: 441 ARTYLDEETITYESIAGKGAKQLTFNQIDLESA----------------GPYAAEDADIT 484 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P + + L + + RG I + + + +A+ + Sbjct: 485 LRLHQTLAPRLKDTGKLESVYREIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAE 544 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+++ ++ + T L+ L+ G+ ++ + S + + +LA + L Sbjct: 545 LEKEAHEVAGEAF-NLGSTKQLQAILYDKLGLRVIKKTPKGAPST-AEPVLQELAHEHEL 602 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 RL ++ KL +TL E + GR+ + + TGR S QN+P + Sbjct: 603 PRLIVEHRSLSKLKSTYTDTLPELIHHRTGRVHTSY-HQAVTATGRLSSSEPNLQNIPIR 661 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G KL+ AD + IE R++A ++ Sbjct: 662 T------------------------QEGRRIRQAFIAPKGYKLLAADYSQIELRIMAHLS 697 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFK 449 G+ + AF +GEDI+ T A+ F +D+V+ +QR K + L Y A + + Sbjct: 698 GDRGLLTAFEHGEDIHKATAAEVFGVTVDEVTGDQRRSAKAINFGLIYGMSAFGLSRQLE 757 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + ++ + + D + + + +Q Sbjct: 758 VDRKTAQEYIDRYFERYPGVLKYMDNIRKQAHDDGYVETLYGRRLYLPEINARNKQLQQA 817 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKH 514 A+ + GTA +++K+A Sbjct: 818 AERTAINAPMQGTAADIIKRAMIEVD 843 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ M + + + VHDE++ E + V L M+ Sbjct: 828 QGTAADIIKRAMIEVDNWLRSEHASDACMTMQVHDELIIEVREEAVDKVKDGLVKRMSAA 887 >gi|332036806|gb|EGI73268.1| DNA polymerase I [Pseudoalteromonas haloplanktis ANT/505] Length = 911 Score = 286 bits (732), Expect = 7e-75, Method: Composition-based stats. Identities = 99/589 (16%), Positives = 195/589 (33%), Gaps = 97/589 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L + A +AV A+ + P +L + L L Sbjct: 337 DTETTSLDYMKAQLVGMSFAVKAGEAVYLPLAHDYPGAPEQL----SLEFVMQKLGPILA 392 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 DE V N +++ + G + ++ T + + N + + LAL + H Sbjct: 393 DENKAKVGQNLKYDKSVLANA-GFALNGIKF-DTMLESYVFNSVGTRHDMDSLALKYLGH 450 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 E I N ++ + Y D + T L + L P Sbjct: 451 KNISFE-----------DIAGKGKKQLTFNQIEL-EKAAPYAAEDADITLRLHEVLWPKI 498 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 D E L + I G ID +++ + + +L+++ ++ Sbjct: 499 AADEKLKSVFEDIEMPLVSVISDIERTGVAIDSNMLAAHSMRLGERLIELEKEAFEIAGE 558 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 S L++ LF G+ ++ + S + +LA D L ++ + Sbjct: 559 PFNLS-SPKQLQVLLFEKLGLPIIKKTPKGAPSTAEE-VLQELAHDYPLPKVIIEHRGLS 616 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L V+ + T + TGR S QN+P + Sbjct: 617 KLKSTYTDKLPLMVNEKTQRVHTSYHQAITATGRLSSTDPNLQNIPIRS----------- 665 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA++G K+V AD + IE R++A ++ + + AFANG Sbjct: 666 -------------EEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQDKGLLNAFANG 712 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F +D V+ + R K + L Y A+ + + Sbjct: 713 LDVHSATAAEVFGVELDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVPRHEAQHYIDK 772 Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500 + + + + + + + + A+ + G Sbjct: 773 YFERFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAERAAINAPMQG 832 Query: 501 TACELVKKAWRAKH-------QGVLQLWKDLTEGFACVVQEGGSISARR 542 TA +++KKA + + ++L + + ++ + + Sbjct: 833 TAADIIKKAMLSVNRWVHEQAPNTIKLLMQVHDELVFEIKTDCAPEYTK 881 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 10/79 (12%) Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M + + N +++ VHDE+V E +C LM++ Sbjct: 831 QGTAADIIKKAMLSVNRWVHEQAPNTIKLLMQVHDELVFEIKTDCAPEYTKHICELMSQA 890 Query: 655 PSWAKGLPLKAEGYEAKRY 673 A +PL E E + Sbjct: 891 A--ALDVPLIVEADEGDNW 907 >gi|319775212|ref|YP_004137700.1| DNA polymerase I [Haemophilus influenzae F3047] gi|317449803|emb|CBY86011.1| DNA polymerase I [Haemophilus influenzae F3047] Length = 610 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 96/532 (18%), Positives = 181/532 (34%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + N F+ +F + GI++ + T +L+ T LA Sbjct: 89 IKPILENPNSHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 146 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 147 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 194 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 195 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 254 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF G+ ++ + S + + +L+ L ++ Sbjct: 255 ALAGQPFNLA-STKQLQEILFDKLGLPVLQKTPKGAPST-NEEVLEELSYSHELPKILVE 312 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 313 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 365 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 366 ------------------NEEGRRIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 407 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A + + Sbjct: 408 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 467 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + + Q S F +A++ + + A+ Sbjct: 468 QKYMNLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 527 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 528 NAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 579 >gi|329912725|ref|ZP_08275792.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] gi|327545555|gb|EGF30735.1| DNA polymerase I [Oxalobacteraceae bacterium IMCC9480] Length = 914 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 110/603 (18%), Positives = 195/603 (32%), Gaps = 121/603 (20%) Query: 5 FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 ID ET S PL + GV AY A+ + D PV+L + + Sbjct: 340 SIDTETTSLVPLQAQLVGISLCCEPGVAAY------IPVAHRYADAPVQL----SRELVL 389 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L D V N ++ +F GI + T + + S L Sbjct: 390 GKMQAWLEDPAKAKVGQNLKYDSHIFANH-GITLRGIA-HDTMLESYVFESHRSHDMDSL 447 Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 AL +E GK F + I EY D + T Sbjct: 448 ALRHLGRTTITFQEVCGKGASQICFDQVDI----------------ARATEYAAEDADIT 491 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + ++P E ++ Q I G ID ++ + + + Sbjct: 492 LQLHQAMLPQVTSDEGLLFVYEKIEVPTAVVLQKIERNGVLIDTGILQVQSHELGKRMLE 551 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 ++ +L + + F + +V + S + +LA+D L Sbjct: 552 IETSAYELAGQPF-NLNSPKQIGEIFFEKLQLPVVKKTPSGAPST-DEEVLAKLAEDYPL 609 Query: 280 NRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ ++ KL + L + + GR+ + TGR + QN+P + Sbjct: 610 PKVLLEYRSLSKLKSTYTDKLPKMIDPTTGRVHTNYA-QTVAVTGRLASNEPNLQNIPIR 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G +V AD + IE R++A ++ Sbjct: 669 T------------------------AEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLS 704 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 G+ ++AFA+G DI+ T A+ F+T V+ EQR KV+ L Y A Sbjct: 705 GDANMLRAFADGIDIHRATAAEIFSTGAADVTTEQRRYAKVINFGLIYGMSAFGLAGNLG 764 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQ 488 + ++ F D + ++ LW+ + Sbjct: 765 IERGAAQSYIDKYFARFSGVKQFMDETRLKAKAHGYVETVFGRRLWLPEINSPNGPRRQG 824 Query: 489 YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSI 538 A+ + GTA +L+K + A K V+Q+ +L E + Sbjct: 825 AERAAINAPMQGTAADLIKLSMVAVQGWLETDGLKSLMVMQVHDELVLEVPQEELELVRV 884 Query: 539 SAR 541 Sbjct: 885 KLP 887 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVG-TLCSLMT 652 Q + D++ M +G +V+ VHDE+V E P V L +LM Sbjct: 835 QGTAADLIKLSMVAVQGWLETDGLKSLMVMQVHDELVLEVPQEELELVRVKLPALMA 891 >gi|239993904|ref|ZP_04714428.1| DNA polymerase I [Alteromonas macleodii ATCC 27126] Length = 930 Score = 286 bits (732), Expect = 8e-75, Method: Composition-based stats. Identities = 103/564 (18%), Positives = 187/564 (33%), Gaps = 94/564 (16%) Query: 4 LFIDIETRSPQ--PLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + D ET S VGV E+ A+ + D P +L + + L Sbjct: 353 IAFDTETTSLNYMDAELVGVSFCIEEGEAAYVPVAHDYPDAPAQL----SREFVLDALKP 408 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALN 117 L +TV+ V + +++ + DI ++L N LAL Sbjct: 409 ILESDTVIKVGQHIKYDKNVLANY---DITLNGIGFDTMLESYVLNSTAQRHDMDSLALA 465 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + H T E I N + + G Y D + T L + Sbjct: 466 YLGHKTIHFE-----------EIAGKGAKQLTFNQISL-EEAGPYAAEDADITLRLHNAI 513 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L D E L + + G ID + + + +A +L+ ++ + Sbjct: 514 WTKLKEIPELKNLLIDVEVPLACVLSRMEQEGVLIDSQRLRQQSQDLATRIAELESEVHE 573 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + T L+ LF + ++ + S S + +LA + L + Sbjct: 574 EAGEPF-NLGSTKQLQHVLFEKMSLPIIKKTPKGAPST-SEDVLQELALEYPLPKKIMEY 631 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 632 RGLTKLKNTYTDKLPKMINHRTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------- 683 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR + G K V AD + IE R++A ++G+ + Sbjct: 684 -----------------NEEGRRVRQAFVPREGNKFVAADYSQIELRIMAHLSGDKGLLD 726 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456 AFA+G+DI+ T A+ F P+D+V+ EQR K + L Y A K + Sbjct: 727 AFAHGKDIHKATAAEVFGVPLDEVTTEQRRSAKAINFGLIYGMSAFGLSKQLNIPRNEAQ 786 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + + + + D ++ + + A+ Sbjct: 787 KYMDLYFERYPGVLEYMDSTRESAKEKGYVETVFGRRLYLPDIKASNGARRKGAERAAIN 846 Query: 496 DKLIGTACELVKKAWRAKHQGVLQ 519 + GTA +++K A + + Sbjct: 847 APMQGTAADIIKMAMIKVDDWIRK 870 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 17/95 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619 RRL D+K R +Q + DI+ M Sbjct: 821 GRRLYLPDIKASN---GARRKGAERAAINAP------MQGTAADIIKMAMIKVDDWIRKN 871 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 + +++ VHDE+V E + + V T+ +LM Sbjct: 872 ASDDVTMMMQVHDELVFEIREDKVETYVSTITALM 906 >gi|39995648|ref|NP_951599.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|39982411|gb|AAR33872.1| DNA polymerase I [Geobacter sulfurreducens PCA] gi|298504670|gb|ADI83393.1| DNA polymerase I [Geobacter sulfurreducens KN400] Length = 891 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 115/590 (19%), Positives = 196/590 (33%), Gaps = 89/590 (15%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D+ET S + + + +A +A+D P +L DRT + L Sbjct: 315 SVDLETTSLNPLEADIVGISLSFRDHEACYIPVGHAYDGAPAQL-DRT---LVLEGLRPL 370 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKNAC 113 L D V V N ++ + ++ GI + W T V + +GL SL Sbjct: 371 LTDPAVRKVGQNLKYDYQVLRRH-GIVMAGV-WCDTMVASYLINPVRSGHGLD-SLAVEH 427 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + +GK + + Y C A+ AW L + R EA E Sbjct: 428 LDHRMISYEEVAGKGKDQLNFARVPVEKASTYSCEDADA--AWLLHRLFLPRVAEAGME- 484 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 RL D E L + + G ++DL L+ +L + + L+E ++ L Sbjct: 485 --RLF--FDLEMPLVPILAEMETAGVKLDLALLGELSAGLGSQLTALEEQVMALAPEPF- 539 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGS 287 + L LF + ++ + + +LA+ IL + Sbjct: 540 NLNSPKQLGEVLFEKMKLPAGKKTKTKTGWSTNVEELERLAEAGHEIAAAILRYRGLAKL 599 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L V GR+ + + TGR S QN+P + Sbjct: 600 KSTYTDALPRLVHPASGRVHTSYN-QTVTNTGRLSSSEPNLQNIPVRT------------ 646 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA G ++ AD + IE RVLA ++ + AFA E Sbjct: 647 ------------DEGRKIRRAFIAEEGHLILSADYSQIELRVLAHLSEDRVFCDAFARDE 694 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462 DI+ T A+ F + V+ E R K + + Y G AK + + Sbjct: 695 DIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGITTKVAKEFIDNY 754 Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501 F D AE+ + ++ AV + G+ Sbjct: 755 FARHPGARAFLDGCVAEAEARGYVTTLMGRRLPIPDIASSNGNIRAFAQRNAVNYPIQGS 814 Query: 502 ACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + + +L + + V EG + R+ Sbjct: 815 AADIIKAAMVRVTERMRREGLTSRLIMQVHDELVFEVPEGERTAMERLVQ 864 >gi|331006814|ref|ZP_08330074.1| DNA polymerase I [gamma proteobacterium IMCC1989] gi|330419366|gb|EGG93772.1| DNA polymerase I [gamma proteobacterium IMCC1989] Length = 782 Score = 286 bits (731), Expect = 9e-75, Method: Composition-based stats. Identities = 99/573 (17%), Positives = 194/573 (33%), Gaps = 99/573 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V A +A C + + P +L + + L L Sbjct: 202 DTETTSLDYMQAKIVGVSFAVNAGEAAYVPCGHDYMGAPEQL----SLECVLAALKPLLE 257 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 + V N +++ + L DI + ++L N + + LA + + Sbjct: 258 NPNKHKVGQNLKYDKHVL---LNHDIDLQGIAYDTMLESYVCNSVATRHDMDSLARFYLD 314 Query: 121 HLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 T + GK + ID ++ Y D + T +L + + Sbjct: 315 RSTIHFEDVAGKKGAKQLTFNQIDI--------------EIAAPYAAEDADVTLQLHQAI 360 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P L E L + I G +D L+ + + Q K+L+++ Sbjct: 361 WPTLQQEPTLQHVLESIEIPLLPVISRIERNGALVDATLLGQQSIELEQRLKELEKEAFD 420 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + S L + LF + ++ + S + +LA D L ++ Sbjct: 421 IAGEEFNLS-SPKQLGVILFEKLELPIIKKTPKGAPSTAEE-VLQELALDYPLPKVLIEH 478 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 479 RGLSKLKSTYTDKLPQMINPATGRIHTSY-HQAVTATGRLSSSDPNLQNIPIR------- 530 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A G K++ AD + IE R++A ++G++ ++ Sbjct: 531 -----------------NAEGRRIRQAFVAPKGYKILAADYSQIELRIMAHLSGDEGLLE 573 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AF G+D++ T A+ F +D+V++EQR K + L Y AK + Sbjct: 574 AFNQGKDVHSATAAEVFGVELDQVTQEQRRRAKAINFGLIYGMSAFGLAKQLGVGRNDAQ 633 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + + + ++ D + + + + A+ Sbjct: 634 QYIDVYFERYPGVKSYMDGVRQQAAVDGYVETLEGRRLYLPEINARNGMRRQAAERTAIN 693 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF 528 + GTA +++K+A A Q + Sbjct: 694 APMQGTAADIIKRAMIAVDQWLCPTNPKDESAV 726 Score = 43.6 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 13/67 (19%) Query: 603 QAISRDILCEGMKNAT------------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCS 649 Q + DI+ M +++ VHDE+V E ++ +V L Sbjct: 697 QGTAADIIKRAMIAVDQWLCPTNPKDESAVNAKMIMQVHDELVLEVKESDLDAVREKLKR 756 Query: 650 LMTKNPS 656 +MT Sbjct: 757 VMTTTVE 763 >gi|296392358|ref|ZP_06881833.1| DNA polymerase I [Pseudomonas aeruginosa PAb1] Length = 913 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 103/606 (16%), Positives = 197/606 (32%), Gaps = 121/606 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 + D ET S A+QA + ++A + + D Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112 L L D + V ++ ++ + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL + H T + GK F + +I + G Y D + Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487 Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L L+D E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276 L+ L + L L+ G+ ++ + T + + + + +LA+ D Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L ++ ++ KL + L E ++ GR+ + + TGR S QN+ Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G KL+ AD + IE R++A Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 +A +D + AF + D++ T A+ F P++ VS +QR K + L Y AK Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485 + ++ + + +A++ + M Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEG 535 + A+ + GTA +++K+A A + +LQ+ +L + E Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLLESGLDARVILQVHDELVLEVREDLVEQ 880 Query: 536 GSISAR 541 R Sbjct: 881 VREGIR 886 >gi|312115891|ref|YP_004013487.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] gi|311221020|gb|ADP72388.1| DNA polymerase I [Rhodomicrobium vannielii ATCC 17100] Length = 1009 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 105/560 (18%), Positives = 199/560 (35%), Gaps = 93/560 (16%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRT---EQSAMPSD--- 56 D ET + + GV E +A A+ D D T E + +P + Sbjct: 415 DTETTALDAMSAKLCGVALALEPGRACYIPLAHRAGDG----LDFTGAGEIAQLPMESAL 470 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSSLKN 111 L L D++V+ + N ++ ++ ++ I + A GL + Sbjct: 471 PRLKALLEDDSVLKIGQNIKYDALIMRRHGDIRVAPYDDTMLMAYACDQGRGGLAGFGMD 530 Query: 112 ACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRD 166 + +GKA C + Y A+ ++ W LF + Sbjct: 531 ELSKRHLGHTPIAFTDVAGKGKAQSTFDCIAVDKATEYAAEDADVTLRLWHLF--RARIA 588 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E ++ L ER + + + G +D ++ +L AQ +L+++I + Sbjct: 589 AEGMAAVYATL------ERPMPAVLGQMEFNGIEVDRTVLSRLSGDFAQSLARLEDEIYE 642 Query: 227 LTD--GIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDL-- 277 L I S +Q L F + G + L+ ++S ++T+ + L Sbjct: 643 LAGQRFNIGSPQQIADLLFGKFGLPGAKKTSTGKWSTGAKVLEDLVSSEDLTEDQRRLPA 702 Query: 278 -ILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + ++L + + +D GR+ ++ TGR S QN+P + R Sbjct: 703 KLLEWRQLAKLKSTYTDSLPQHIDADTGRIHTCYSL-ASTSTGRLSSTEPNLQNIPIRTR 761 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +RS IA+ GKKL+ AD + IE RVLA +A Sbjct: 762 ------------------------EGRMIRSAFIAAPGKKLISADYSQIELRVLAHMADI 797 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 AFA G DI+ T ++ F P+ + E R K + + Y G ++ Sbjct: 798 PALKHAFAEGLDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAFGLSQQLGIP 857 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 G + ++ + + D + + ++ M+ + Sbjct: 858 RQEAGDYIAKYFERFPGIRAYMDAMRSKVHEDGHVETLFGRKIHFPEIKTPKWNMRQFFE 917 Query: 491 EFAVKDKLIGTACELVKKAW 510 A+ + GTA +++++A Sbjct: 918 RAAINAPIQGTAADIIRRAM 937 Score = 45.1 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 9/100 (9%) Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNG--YDIVLTVH 629 + T + + + +Q + DI+ M + G ++L VH Sbjct: 899 KIHFPEIKTPKWNMRQFFERAAINAPIQGTAADIIRRAMVRVPAALEQAGVRARMLLQVH 958 Query: 630 DEIVSETPDTP-YFSVGTLCSLMTKN--PSWAKGLPLKAE 666 DE+V E D+ ++ + +M + P+ A +PLK + Sbjct: 959 DELVFEADDSEVEATIKAVTRVMERAAEPAVAFSVPLKVD 998 >gi|116053643|ref|YP_793970.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] gi|115588864|gb|ABJ14879.1| DNA polymerase I [Pseudomonas aeruginosa UCBPP-PA14] Length = 913 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 103/606 (16%), Positives = 197/606 (32%), Gaps = 121/606 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 + D ET S A+QA + ++A + + D Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112 L L D + V ++ ++ + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL + H T + GK F + +I + G Y D + Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487 Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L L+D E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276 L+ L + L L+ G+ ++ + T + + + + +LA+ D Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L ++ ++ KL + L E ++ GR+ + + TGR S QN+ Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G KL+ AD + IE R++A Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 +A +D + AF + D++ T A+ F P++ VS +QR K + L Y AK Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485 + ++ + + +A++ + M Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEG 535 + A+ + GTA +++K+A A + +LQ+ +L + E Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREDLVEQ 880 Query: 536 GSISAR 541 R Sbjct: 881 VREGIR 886 >gi|70733594|ref|YP_257234.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] gi|68347893|gb|AAY95499.1| DNA polymerase I [Pseudomonas fluorescens Pf-5] Length = 929 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 100/615 (16%), Positives = 192/615 (31%), Gaps = 127/615 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD 56 + D ET A+QA + +++ T + + D Sbjct: 342 KLIAFDTETT-GID---------AQQAQLVGLSFSVKAGEAAYVPLTHSYMGAPAQLDRD 391 Query: 57 -----LLQYLRDETVMCVAHNSLFERILFKKTL--GIDIPSKRWI----CTSVLARTNGL 105 L L D ++ V ++ F+ + G T + + Sbjct: 392 SVLLALKPLLEDPKLLKVGQHAKFDMNILANCAIGGDQANGITVRGVAFDTMLESYVLNS 451 Query: 106 PS-SLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFG 160 + LA + +H T + GK F + + + G Sbjct: 452 TATRHDMDSLAQKYLDHSTVSFQDIAGKGAKQLTFDQIPL----------------EQAG 495 Query: 161 EYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L + L L+D E L + I +G +D L+ Sbjct: 496 PYAAEDADVTLRLHQVLFDKLSAIPSLASVLTDIEMPLVPVLARIERQGALVDDKLLGVQ 555 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 + + L+ + ++ + L L+ G+ ++ + S Sbjct: 556 SIELGDKMVALEREAFEIAGEEF-NLGSPKQLGSILYDKLGLPVLKKTAKGQPSTAEE-V 613 Query: 270 ITQLAKD-LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 + +LA+D L R+ ++ KL + L E ++ GR+ + + TGR S Sbjct: 614 LAKLAEDDYPLPRVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVASTGRLSS 672 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R IA G KL+ AD + Sbjct: 673 SDPNLQNIPVRT------------------------AEGRRIRQAFIAPPGYKLLAADYS 708 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++ ++ + AF N D++ T A+ F + V+ +QR K + L Y Sbjct: 709 QIELRIMAHLSRDEGLLNAFRNNLDVHTATAAEVFKVELKDVTSDQRRSAKAINFGLIYG 768 Query: 443 GGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------- 488 GA+ + + + D +A++ + Sbjct: 769 MGAQKLGKDIGVDTKQAKAYIDTYFARYPGVREYMDRTRAQAADQGYVETIFGRRLYLPE 828 Query: 489 -----------YPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEG 527 A+ + GTA +++KKA A + +LQ+ +L Sbjct: 829 INSNKPQERAGAERTAINAPMQGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLE 888 Query: 528 FACVVQEGGSISARR 542 + + R Sbjct: 889 VREDLVDQVREEIRG 903 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 Q + DI+ + M +G D ++L VHDE+V E + V + M+ Sbjct: 850 QGTAADIIKKAMVAVDNWLASSGLDARVILQVHDELVLEVREDLVDQVREEIRGHMS 906 >gi|329897110|ref|ZP_08271855.1| DNA polymerase I [gamma proteobacterium IMCC3088] gi|328921434|gb|EGG28823.1| DNA polymerase I [gamma proteobacterium IMCC3088] Length = 908 Score = 286 bits (731), Expect = 1e-74, Method: Composition-based stats. Identities = 113/612 (18%), Positives = 209/612 (34%), Gaps = 92/612 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S L VG+ AE A A+ + P +L + + + Sbjct: 331 TFAFDTETNSLDYMEAEL--VGLSFCAEPGVACYVPVAHDYPGAPDQL----SRDYVLNQ 384 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L D V + ++ + GI + T + + + LA Sbjct: 385 LKDLLEDPQYQKVGQHLKYDMHVLANY-GIALRGFA-GDTMLESYVLDSVGGRHDMDSLA 442 Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDS-PPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + T + GK F + S++ PY C A+ WQL+ EY + AT Sbjct: 443 ERYLGRRTISFEDVAGKGAKQLTFNQVSLEQAVPYACEDADIT--WQLY-EYLTNQLTAT 499 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L +D E L + Q+I G + +++ + +I +L+ + L Sbjct: 500 ESLHTV---YTDIELPLAPVLQSIERNGALVSREILQQQSSVIGARLIELEAEAHDLAGR 556 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + T L LF + ++ + S + +LA D L ++ + Sbjct: 557 PF-NLGSTKQLGEILFDELKLPIIKKTPKGAPST-GEEVLVELALDYPLPKVLLEYRGLA 614 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L ++ GR+ + + TGR S QN+P + Sbjct: 615 KLKSTYTDKLPTLINPRTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRS---------- 663 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + +R IA +V AD + IE R++A ++G+ + AF Sbjct: 664 --------------VEGRAIRKAFIAPENHVIVAADYSQIELRIMAHLSGDAGLLTAFNE 709 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G D++ T A+ F +D+V+ +QR K + L Y AK + + Sbjct: 710 GLDVHAATAAEVFGVALDEVTSDQRRSAKAINFGLIYGMSAFGLAKQLHIGRAESQAYID 769 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 + Q + D + + + A+ + Sbjct: 770 TYFQRYPGVLDYMDRTRQGAHERGYVETIFGRRLYLPEINARNKMRVQAAERTAINAPMQ 829 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G+A +++KKA A + +D + ++Q + V VP+ + + V Sbjct: 830 GSAADIIKKAMLAVD----RFLRDSSLESKMIMQ----VHDELVFEVPKHELDALRAGVI 881 Query: 560 IVLPSSRRLVYS 571 + S+ +L Sbjct: 882 TAMESAAQLAVP 893 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 6/48 (12%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV 644 Q + DI+ + M + +++ VHDE+V E P ++ Sbjct: 829 QGSAADIIKKAMLAVDRFLRDSSLESKMIMQVHDELVFEVPKHELDAL 876 >gi|87120949|ref|ZP_01076841.1| DNA polymerase I [Marinomonas sp. MED121] gi|86163787|gb|EAQ65060.1| DNA polymerase I [Marinomonas sp. MED121] Length = 925 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 105/575 (18%), Positives = 198/575 (34%), Gaps = 103/575 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V A +A A+ ++ P +L ++ + + L Sbjct: 353 DTETTSLNYMAAELVGFSVSVEAGKAAYIPVAHDYEGAPEQL----DRDWVLEQIKPVLE 408 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 D + + V + ++ + DI K ++L N + LA F Sbjct: 409 DASQLKVGQHLKYDANVLANY---DIELKGIEFDTMLESYIFNSTANRHDMDSLAKKFLS 465 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 H + E I N ++ + Y D + T L + + Sbjct: 466 HKSVSFE-----------EIAGKGAKQKTFNQIEL-EQAAFYAAEDADITFRLHQAIWAK 513 Query: 181 SD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + + G ID DL+ + IA ++L+ ++ Sbjct: 514 LEKTPELVSIFKEIELPLVPVLAKMEQTGALIDPDLLHEQSSEIATRLEELEIKAHEMAG 573 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 S L+ LF+ + ++ + S + + +LA D L R+ ++ Sbjct: 574 QAFNLS-SPKQLQEILFVKLELPILKKTPKGQPST-AEPILQELALDYELPRIIMEHRSL 631 Query: 290 LKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E + GR+ + + TGR S QN+P + Sbjct: 632 SKLKSTYTDKLPEMIQKTGRIHTSY-HQAVTATGRLSSTDPNLQNIPIRT---------- 680 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G KL+ AD + IE R+++ ++ + ++AFAN Sbjct: 681 --------------AEGRRIRQAFIAPEGYKLIAADYSQIELRIMSHLSQDPGLLEAFAN 726 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 +D++ T A+ F +D+V+ EQR K + L Y AK +Q Sbjct: 727 NKDVHKATAAEVFEVALDEVTGEQRRRAKAINFGLIYGMSAFGLAKQLGIGRPEAQKYIQ 786 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 ++ + T+ + ++ + M+ A+ + Sbjct: 787 RYFERYPGVRTYMENTREMAREKGYVETLFGRRLYLPDIKASNAMMRQAAERTAINAPMQ 846 Query: 500 GTACELVKKAWRAKH----------QGVLQLWKDL 524 GTA +++K+A H + +LQ+ +L Sbjct: 847 GTAADIIKRAMIEMHAWLKDTDLDIKMILQVHDEL 881 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 16/94 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNAT 618 RRL D+K + + A R +Q + DI+ M T Sbjct: 817 GRRLYLPDIKASNAMMRQAA---ERTAINAP------MQGTAADIIKRAMIEMHAWLKDT 867 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 ++L VHDE++ E ++ + + +M Sbjct: 868 DLDIKMILQVHDELIFEVKESDLSAAQEKILDIM 901 >gi|152985854|ref|YP_001351604.1| DNA polymerase I [Pseudomonas aeruginosa PA7] gi|150961012|gb|ABR83037.1| DNA polymerase I [Pseudomonas aeruginosa PA7] Length = 917 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 105/606 (17%), Positives = 202/606 (33%), Gaps = 121/606 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVK----------LWDRTEQSAM 53 + D ET S A+QA + ++A + + D+ E+ A+ Sbjct: 338 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPDQLERDAV 387 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112 L L D + V ++ ++ + T + + + Sbjct: 388 LRALKPLLEDPQKLKVGQHAKYDINVLANASTPIAMQGVAYDTMLESYVLDSTATRHDMD 447 Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL + H T + GK F + +I + G Y D + Sbjct: 448 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 491 Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L L+D E L + I G +D +L+ + ++ Sbjct: 492 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 551 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276 L+ L + L L+ G+ ++ + T + + + + +LA+ D Sbjct: 552 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 609 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L ++ ++ KL + L E ++ GR+ + + TGR S QN+ Sbjct: 610 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 668 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R IA G KL+ AD + IE R++A Sbjct: 669 PIRT------------------------AEGRRIRQAFIAPQGYKLLAADYSQIELRIMA 704 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 +A ++ + AF + D++ T A+ F P++ VS +QR K + L Y AK Sbjct: 705 HLAKDEGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 764 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485 + ++ + + +A++ + M Sbjct: 765 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 824 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEG 535 + A+ + GTA +++K+A A + +LQ+ +L + E Sbjct: 825 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLRESGLDARVILQVHDELVLEVREDLVEQ 884 Query: 536 GSISAR 541 R Sbjct: 885 VREGIR 890 >gi|227824019|ref|YP_002827992.1| DNA polymerase I [Sinorhizobium fredii NGR234] gi|227343021|gb|ACP27239.1| DNA polymerase I [Sinorhizobium fredii NGR234] Length = 1040 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 102/528 (19%), Positives = 182/528 (34%), Gaps = 87/528 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L L D +V+ VA N ++ ++ K+ GI + S G ++ Sbjct: 512 SRLKNLLEDPSVLKVAQNLKYDYLVMKRH-GIAMQSFDDTMLMSYVVDAGNGMHGMDSLS 570 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 ++ IA K S+ D +A Y D + T L+ Sbjct: 571 ERWLGHTPIPYKD----IAGTGKASVSFDFVDIDKATT---------YAAEDADVTLRLW 617 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P ER L + + +RG +D ++ +L +AQ L+++I Sbjct: 618 HVLKPRLAAKGLTRVYERLERPLIAVLAHMEERGITVDRQILSRLSGELAQGAAALEDEI 677 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283 +L L LF G+ ++ T + S S + LA L R Sbjct: 678 YRLAGETFTI-GSPKQLGDILFGKMGLPGGSKTK-TGQWSTSASVLEDLAAVGHELPRKI 735 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L V + + T A+ TGR S QN+P + Sbjct: 736 VDWRQLTKLKSTYTDALPGYVHPETKRVHTGYALAATTTGRLSSSEPNLQNIPVRT---- 791 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R+ IA+ G KLV AD + IE RVLA +A Sbjct: 792 --------------------AEGRRIRTAFIATPGHKLVSADYSQIELRVLAHVADIPQL 831 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AFA+G DI+ T ++ F P++ + E R K + + Y G A S Sbjct: 832 RQAFADGVDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLSIERSE 891 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 G ++++ + + + + S + M+ + Sbjct: 892 AGDYIKRYFERFPGIRDYMENTKAFAREHGYVETIFGRRAHYPDIRSSNPSMRAFNERAS 951 Query: 494 VKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEG 535 + + G+A +++++A + ++ + + V+EG Sbjct: 952 INAPIQGSAADIIRRAMVKMEPALDEAKLAARMLLQVHDELIFEVEEG 999 >gi|254500698|ref|ZP_05112849.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] gi|222436769|gb|EEE43448.1| DNA polymerase I superfamily [Labrenzia alexandrii DFL-11] Length = 1001 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 96/529 (18%), Positives = 175/529 (33%), Gaps = 95/529 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D ++ +A N ++ ++ + G+D+ G + + Sbjct: 475 LKPMLEDRGILKIAQNLKYDWLVMTRH-GVDVDPYDDTMLLSYTVDAGKGGNGMDELSER 533 Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +E GK++I F K +ID Y D + T Sbjct: 534 WLGHKPIPFKEVCGSGKSMIT-FDKVAIDKA----------------TAYAAEDADVTLR 576 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER + + + RG +D ++ +L AQ L+ Sbjct: 577 LWLTLKPRLASDHMATVYETLERPMVPVLARMEKRGISVDRQMLSRLSGDFAQGAAALES 636 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I +L + L LF G+ ++ T S + LA + L Sbjct: 637 EIYELAGETF-NVGSPKQLGDILFGKMGLPGGKKTK-TGAWSTSAQVLEDLAAEGHPLPS 694 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L ++ + + T A+ TGR S QN+P + + Sbjct: 695 KIVEWRQLSKLKSTYTDALPGYINPETKRVHTSYSLAATTTGRLSSSEPNLQNIPVRTEA 754 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G+KL+ AD + IE RVLA +A Sbjct: 755 ------------------------GRKIRQAFIAEKGQKLISADYSQIELRVLAHMADIP 790 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F TPI+ + R K + + Y G A Sbjct: 791 QLKKAFEDGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLANQLGISR 850 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 G ++ + Q + + + + + + M+ Y Sbjct: 851 GEAGDYIKTYFQRFPGIKDYMEAVKKQVHADGYVTTIFGRKAHYPEVNTKNPNMRAFYER 910 Query: 492 FAVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQE 534 A+ + G+A +++++A + Q+ + + V E Sbjct: 911 AAINAPIQGSAADILRRAMVRMEDRLTASKLDAQMLLQVHDELIFEVPE 959 >gi|107104595|ref|ZP_01368513.1| hypothetical protein PaerPA_01005674 [Pseudomonas aeruginosa PACS2] Length = 913 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 102/599 (17%), Positives = 196/599 (32%), Gaps = 121/599 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 + D ET S A+QA + ++A + + D Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112 L L D + V ++ ++ + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL + H T + GK F + +I + G Y D + Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487 Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L L+D E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276 L+ L + L L+ G+ ++ + T + + + + +LA+ D Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L ++ ++ KL + L E ++ GR+ + + TGR S QN+ Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G KL+ AD + IE R++A Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 +A +D + AF + D++ T A+ F P++ VS +QR K + L Y AK Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485 + ++ + + +A++ + M Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534 + A+ + GTA +++K+A A + +LQ+ +L + E Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDELVLEVREELVE 879 >gi|222054507|ref|YP_002536869.1| DNA polymerase I [Geobacter sp. FRC-32] gi|221563796|gb|ACM19768.1| DNA polymerase I [Geobacter sp. FRC-32] Length = 891 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 110/592 (18%), Positives = 200/592 (33%), Gaps = 114/592 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVK-----LWDRTEQSAMP 54 ID+ET S P +A I ++++ D PV + D+ + + Sbjct: 316 AIDLETTSLNPF----------EAEIVGISFSFSDHQAYYIPVAHHYLGVPDQLSLAHVL 365 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L L D + + N ++ + ++ GI++ + C ++LA P SS Sbjct: 366 QALRPLLLDPAIKKIGQNIKYDYQVLRRA-GIEM--EGIWCDTMLASYLLNPNRSSHGLN 422 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 LA+ +H A +A K + + +A Y D +AT Sbjct: 423 ALAVELLDHKMI---SYADVAGSGKDQKNFAQVEVEKA---------SIYSCEDADATWL 470 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L K +P L + E L + + G ++DL L+ KL + +L+ Sbjct: 471 LHKLFLPQIEESGMERLLFELEMPLVKILAEMELYGVKLDLVLLQKLSAGFGSQLAELER 530 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +I + + L LF + ++ + + +LA + + RL Sbjct: 531 EIFQCAGTTF-NINSPKQLGEVLFEHLQLPCGKKTKTKTGWSTNVDELERLAAEHEIGRL 589 Query: 283 ASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ KL + L + V S GR+ + + TGR S QN+P + Sbjct: 590 ILQYRSLSKLKSTYTDALPKLVYSESGRIHTSYN-QAVTNTGRLSSSEPNLQNIPIRS-- 646 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G ++ AD + IE RVLA ++ + Sbjct: 647 ----------------------EEGRSIRHAFIAEEGCLILSADYSQIELRVLAHLSQDR 684 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 AFA EDI+ T A+ F V+ E R K + + Y G AK Sbjct: 685 VFCDAFAKDEDIHTRTAAEVFGLFPGMVTPEMRRQAKTINFGVIYGQGPFSLAKELGVST 744 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + + F D E+ + ++ Sbjct: 745 KVAKEFIDNYFDRHAGARVFLDGCVREAEAKGHVTTILGRRLPIPDINSTNGNIRSFAQR 804 Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQ 533 A+ + G+A +++K+A K + ++Q+ +L + Sbjct: 805 NAINYPIQGSAADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLEEK 856 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTL-CSLM 651 +Q + DI+ + M + G +++ VHDE+V E P ++ L C M Sbjct: 811 IQGSAADIIKQAMVRVSGRMRREGLKSRLIMQVHDELVFEVPLEEKLTMEKLVCHEM 867 >gi|15600686|ref|NP_254180.1| DNA polymerase I [Pseudomonas aeruginosa PAO1] gi|81539387|sp|Q9HT80|DPO1_PSEAE RecName: Full=DNA polymerase I; Short=POL I gi|9951828|gb|AAG08878.1|AE004962_2 DNA polymerase I [Pseudomonas aeruginosa PAO1] Length = 913 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 101/589 (17%), Positives = 194/589 (32%), Gaps = 121/589 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 + D ET S A+QA + ++A + + D Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112 L L D + V ++ ++ + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL + H T + GK F + +I + G Y D + Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487 Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L L+D E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276 L+ L + L L+ G+ ++ + T + + + + +LA+ D Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L ++ ++ KL + L E ++ GR+ + + TGR S QN+ Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G KL+ AD + IE R++A Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 +A +D + AF + D++ T A+ F P++ VS +QR K + L Y AK Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVSGDQRRSAKAINFGLIYGMSAFGLAK 760 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485 + ++ + + +A++ + M Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + A+ + GTA +++K+A A + +LQ+ +L Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDEL 869 >gi|283834618|ref|ZP_06354359.1| hypothetical protein CIT292_08818 [Citrobacter youngae ATCC 29220] gi|291069528|gb|EFE07637.1| DNA polymerase I [Citrobacter youngae ATCC 29220] Length = 928 Score = 285 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 106/592 (17%), Positives = 198/592 (33%), Gaps = 120/592 (20%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + + GV AY A+ + D P ++ + + Sbjct: 355 DTETDSLDNISANLVGLSFAIEPGVAAY------VPVAHDYLDAPDQI----SRDRALAL 404 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACL 114 L L DE V N ++R + DI + + ++L N + L Sbjct: 405 LKPLLEDENAHKVGQNLKYDRGILANY---DIELRGIVFDTMLESYILNSVAGRHDMDSL 461 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + + +H T E GK F + ++ + G Y D + T Sbjct: 462 SDRWLKHKTITFEEIAGKGKNQLTFNQIAL----------------EEAGRYAAEDADVT 505 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L ++ P + + L + + G +I ++ K E + + Sbjct: 506 LQLHLKMWPELQKHKGPLNVFENIDMPLVPVLSRVERNGVKIAPAVLHKHSEELTLRLNE 565 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ S T L+ LF GI + + G S S + +LA D L Sbjct: 566 LEQKAHEIAGEAFNLS-STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPL 623 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L ++ GR+ + + TGR S QN+P Sbjct: 624 PKVILEYRGLAKLKSTYTDKLPLMINKKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP-- 680 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA +V AD + IE R++A ++ Sbjct: 681 ----------------------VRNDEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLS 718 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + + AFA G+DI+ T A+ F P+D V+ EQR K + L Y A+ Sbjct: 719 RDKGLLTAFAEGKDIHRATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLARQLN 778 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------------- 490 + + + + + +A++ + Sbjct: 779 IPRKEAQKYMDLYFERYPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNGARRAG 838 Query: 491 --EFAVKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 A+ + GTA +++K+A W Q +++ + + V + Sbjct: 839 AERAAINAPMQGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHK 890 Score = 40.9 bits (94), Expect = 0.73, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M + +++ VHDE+V E SV + LM Sbjct: 849 QGTAADIIKRAMIAVDGWLQTEQPRVRMIMQVHDELVFEVHKDDLESVSKKIHQLM 904 >gi|307943370|ref|ZP_07658714.1| DNA polymerase I [Roseibium sp. TrichSKD4] gi|307773000|gb|EFO32217.1| DNA polymerase I [Roseibium sp. TrichSKD4] Length = 793 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 97/529 (18%), Positives = 173/529 (32%), Gaps = 95/529 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D V+ +A N ++ ++ G+++ S G + + Sbjct: 267 LKPMLEDPAVLKIAQNLKYDWLVMTHY-GVNVTSYDDTMLLSYTVDAGKGGNGMDELSER 325 Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +E GK++I F K +D Y D + T Sbjct: 326 WLGHKPIPFKEVCGSGKSMIT-FDKVPLDKA----------------TAYAAEDADVTLR 368 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L++ L P ER + + + RG +D ++ +L AQ L+ Sbjct: 369 LWQVLKPRLASDRMATVYETLERPMVPVLARMEQRGIAVDRQMLSRLSGDFAQGMAGLEA 428 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I +L + L LF G+ ++ T S S + LA + L Sbjct: 429 EIHELAGESF-NIGSPKQLGDILFGKMGLPGGKKTK-TGAWSTSASVLEDLAAEGHTLPS 486 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L + D + T A+ TGR S QN+P + Sbjct: 487 KIVEWRQLSKLKSTYSDALPGYIHPDTKRVHTSYALAATTTGRLSSSEPNLQNIPVRT-- 544 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 A +R +A G KL+ AD + IE RVLA +A Sbjct: 545 ----------------------AAGRKIRQAFVAEKGMKLISADYSQIELRVLAHMADIP 582 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF G DI+ T ++ F TPI+ + R K + + Y G A Sbjct: 583 QLKKAFEEGLDIHAMTASEMFGTPIEGMDPMVRRQAKAINFGIIYGISAFGLAAQLGISR 642 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 ++ + + + + + + + M++ Y Sbjct: 643 GEASDYIKTYFERFPGIKEYMEATKKQVHATGYVTTIFGRKAHYPDVNTKNPNMRNFYER 702 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534 A+ + G+A +++++A +L Q+ + + V E Sbjct: 703 AAINAPIQGSAADILRRAMVRMEDRLLSSKLDAQMLLQVHDELIFEVPE 751 >gi|13472868|ref|NP_104435.1| DNA polymerase I [Mesorhizobium loti MAFF303099] gi|14023615|dbj|BAB50221.1| DNA polymerase I [Mesorhizobium loti MAFF303099] Length = 1003 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 108/543 (19%), Positives = 184/543 (33%), Gaps = 96/543 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D +V+ +A N ++ ++ + GID+ G P LA Sbjct: 476 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GIDVAPFDDTMLISYVLDAGTPHGHGMDQLAE 534 Query: 117 NFSEH---LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + H K G K S+ D +A + D + T L Sbjct: 535 KWLGHTPLQLKDVTGS------GKSSVGFDQVDIDKATA---------HAAEDADVTLRL 579 Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ER L + + RG +D ++ +L +AQ +L+E+ Sbjct: 580 WLVLKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEE 639 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282 I +L I + L LF G+ ++ T + S + LA + L R Sbjct: 640 IYQLIGERI-NIGSPKQLGDILFGRMGLPGGSKTK-TGQWSTSAQLLEDLAAEGHELPRK 697 Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L + D R T A+ TGR S QN+P + Sbjct: 698 IVDWRQLTKLKSTYTDALPGFIHPDTRRVHTSYALAATTTGRLSSSDPNLQNIPVRT--- 754 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ IA G +LV AD + IE RVLA +A Sbjct: 755 ---------------------AEGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQ 793 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AFA+G DI+ T ++ FN P++ + E R K + + Y G A Sbjct: 794 LRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPRE 853 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ + + + + S + ++ Sbjct: 854 EASNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNERA 913 Query: 493 AVKDKLIGTACELVKKAW--------RAKHQGVL--QLWKDLTEGFACVVQEGGSISARR 542 ++ +L GTA +++++A RAK + Q+ +L E R Sbjct: 914 SINARLQGTAADIIRRAMVRMEEALDRAKLSARMLLQVHDELIFETVEAEVEATIPVVRH 973 Query: 543 VAN 545 V Sbjct: 974 VME 976 >gi|89074464|ref|ZP_01160941.1| DNA polymerase I [Photobacterium sp. SKA34] gi|89049752|gb|EAR55302.1| DNA polymerase I [Photobacterium sp. SKA34] Length = 923 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 100/563 (17%), Positives = 197/563 (34%), Gaps = 103/563 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L ++ + L L D + N F+ + + GI+ Sbjct: 374 AAYVPLAHDYLDAPAQL----DRDWVLEQLKPLLEDPKQAKIGQNLKFDASIVARY-GIE 428 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + N + LAL + EH E GK F + + Sbjct: 429 MQGIVF-DTMLESYVFNSVVGRHDMDSLALRYLEHKNISFEEVAGKGKKQLTFNQIDL-- 485 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLLD 191 + G Y D + T L L P + E L + Sbjct: 486 --------------EQAGPYAAEDADITLRLHNTLYPKVEADDKLKHVFENIEMPLVPVL 531 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G +D L+ IA ++++ ++ + S L+ LF G+ Sbjct: 532 SRMERTGVYVDSMLLGAQSTEIAVRLDEIEKKAFEIAEQEFNLS-SPKQLQAILFEKMGL 590 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + +LA D L +L + KL + L + V+ GR+ Sbjct: 591 PVLKKTPSGTPST-NEEVLQELALDYPLPKLLLEYRGLAKLKSTYTDKLPKMVNPATGRV 649 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 650 HTSY-HQAVTATGRLSSSDPNLQNIP------------------------VRNEEGRRIR 684 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A +G K++ D + IE R++A ++G+ + AF +G+DI+ T A+ + I+ VS Sbjct: 685 QAFVAQSGYKILAVDYSQIELRIMAHLSGDKALLDAFRHGKDIHAATAAEILSLDIENVS 744 Query: 426 KEQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTST 471 EQR K + L Y A+ + + + ++ ++ ++ ++ Sbjct: 745 SEQRRRAKAINFGLIYGMSAFGLAKQLDMGRNEAQNYMNVYFERYPGVLEYMESTRNAAS 804 Query: 472 FEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + +S + + A+ + GTA +++K A A Sbjct: 805 EQGYVETLFGRRLYLPDIKSRNGLRRKAAERAAINAPMQGTAADIIKLAMIAVDDWVQQQ 864 Query: 515 -QGVLQLWKDLTEGFACVVQEGG 536 +G ++L + + V+E Sbjct: 865 PEGDVRLLMQVHDELVFEVKESA 887 >gi|269837619|ref|YP_003319847.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] gi|269786882|gb|ACZ39025.1| DNA polymerase I [Sphaerobacter thermophilus DSM 20745] Length = 915 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 109/570 (19%), Positives = 202/570 (35%), Gaps = 103/570 (18%) Query: 4 LFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D+ET S P L + + +++ +A DDE + D ++ P Sbjct: 334 IALDVETTSTDPMTARLVGIALATSGQRSFYVPVNHANDDEQLDA-DEVREALSP----- 387 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D + AH+ ++ ++ ++ P R +++A ++L +L F+ Sbjct: 388 LLADPNTVVYAHHGKYDALVLERA---GYPRPRIAFDTMIAAYLLGENALDL--KSLAFN 442 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 +M E LI R + D T Q G+Y DVEAT L + L P Sbjct: 443 RLGMEMTEITTLIGR----GRNQLTMDLTDV------QAAGDYACADVEATYRLVEVLQP 492 Query: 180 LSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + + G +D+DL+ L + + +L+ +I L Sbjct: 493 DLEAQQQERLFREIEMPLIDVLIDMEKVGIAVDVDLLRDLSRQLTGQLAELEREIYGLAK 552 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + T L LF G+ ++ +S + L + + Sbjct: 553 HEF-NINSTRQLATVLFDELGLPAGRRTKTG--YSVSQEVLENLRHAHPIVDCILEYRQL 609 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 LKL + L E V+ GR+ + A+ TGR S QN+P + Sbjct: 610 LKLKSTYVDALPEQVNPETGRIHTSFNQTIAA-TGRLSSTDPNLQNIPVRT--------- 659 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS---------NGKKLVVADLAGIEARVLAWIAG 394 VR IA L+ AD + IE R++A ++G Sbjct: 660 ---------------ELGRSVRRAFIADNRPGYRPFDEEAVLLSADYSQIELRLMAHLSG 704 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ + AF G+DI+ T A F P+++V+ + R + K + + Y G A+ Sbjct: 705 DERLVHAFREGQDIHAATAADVFGVPLEQVTPDMRRVAKTVNFGIMYGMQAYGLARDTGM 764 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 + ++ + F + +S ++ + Sbjct: 765 SRQDAQRFIDRYMARLPGVRAFLERTKRQALQQGYVTSMFGRRRYTPDIDSSNVNRRLAA 824 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +++K A H + + Sbjct: 825 ERMAINMPLQGSAADIMKIAMIRVHDEMRR 854 >gi|239830974|ref|ZP_04679303.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] gi|239823241|gb|EEQ94809.1| DNA polymerase I [Ochrobactrum intermedium LMG 3301] Length = 985 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 111/620 (17%), Positives = 206/620 (33%), Gaps = 101/620 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------------TEQ 50 L D ET S P+ QA + + A T + Sbjct: 398 LAFDTETTSVDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGTVE 447 Query: 51 SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 +P + L L D +V+ +A N ++ ++ ++ I + + T +++ Sbjct: 448 GQIPLGEALAALKTVLEDASVLKIAQNMKYDWLIMRRY---GINTVSFDDTMLISYVLDA 504 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K S+ D RA Sbjct: 505 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSSVTFDMVDIDRATA--------- 549 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 550 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 609 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I +L L LF G+ ++ T + S + Sbjct: 610 DLAQAAAAYEDEIYELAGERFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 667 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ R T ++ TGR S Sbjct: 668 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPATRRVHTCYAMASTSTGRLSSSDP 727 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 728 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 763 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y A Sbjct: 764 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 823 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 +A+ + ++ Q ++ + FE + + + + E + + G Sbjct: 824 ---FGLANQLSIPREEAGQYIR--TYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHY 878 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 RA + + + +Q + RR + + K ++L Sbjct: 879 --PDIRASNPQIRAFNE--RAAINAPIQGSAADIIRRAMIRMEDALAKEKLAARMLLQVH 934 Query: 566 RRLVYSDVKGDCSYLNTATS 585 L++ + + + Sbjct: 935 DELIFEVPENEVEKTVSVVR 954 >gi|148545397|ref|YP_001265499.1| DNA polymerase I [Pseudomonas putida F1] gi|148509455|gb|ABQ76315.1| DNA polymerase I [Pseudomonas putida F1] Length = 915 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 98/573 (17%), Positives = 190/573 (33%), Gaps = 105/573 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ ++ PV+L ++ A+ L L D V N+ ++ + Sbjct: 364 AAYVPLAHDYEGAPVQL----DREAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPPI 419 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 T + + + LA + +H T E GK F + ++D Sbjct: 420 EMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQITLDK 479 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 G Y D + T L L L D E L + Sbjct: 480 A----------------GPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVL 523 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + +L+ +L + L L+ G+ Sbjct: 524 ARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETF-NLGSPKQLGTILYDKLGM 582 Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 ++ + S + + + +LA+ L + ++ KL + L ++ GR Sbjct: 583 PVLSKTAKGQPST-AEAVLDELAEQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGR 641 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + Q + TGR S QN+P + + Sbjct: 642 IHTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRI 676 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 677 RQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDV 736 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479 + +QR K + L Y AK + ++ + + +A+ Sbjct: 737 TTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQA 796 Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++K+A Sbjct: 797 AEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSE 856 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARR 542 + +LQ+ +L + E R+ Sbjct: 857 SGLDARVILQVHDELVLEVREDLVEQVKDEIRQ 889 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 16/103 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + RRL D+ L R +Q + DI+ M Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVKVD 851 Query: 619 K----NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 +G D ++L VHDE+V E + V + M++ Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQHMSQA 894 >gi|119470389|ref|ZP_01613117.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] gi|119446314|gb|EAW27590.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Alteromonadales bacterium TW-7] Length = 911 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 99/594 (16%), Positives = 194/594 (32%), Gaps = 117/594 (19%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S + K G AY A+ + D P +L + Sbjct: 337 DTETTSLDYMQAQLVGMSFSVKAGEAAY------LPVAHDYPDAPEQL----SLEFVMQK 386 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLA 115 L L D V N +++ + G ++ ++ T + + N + + LA Sbjct: 387 LGPILADANKAKVGQNLKYDKSVLANA-GYELNGIKF-DTMLESYVFNSVGTRHDMDSLA 444 Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + H + GK F + +D Y D + T Sbjct: 445 LKYLGHKNISFEDIAGKGKKQLTFNQIELDKAA----------------PYAAEDADITL 488 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L P D E L + I G ID ++ + + + +L Sbjct: 489 RLHEVLWPKIEADEKLKSVFEDIEMPLVSVISDIERTGVAIDSSMLGAHSQRLGERLIEL 548 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 +++ ++ S L++ LF + ++ + S + +LA D L Sbjct: 549 EKEAFEIAGEPFNLS-SPKQLQVLLFEKLELPIIKKTPKGAPSTAEE-VLQELAHDYPLP 606 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++ + KL + L V+ + T + TGR S QN+P + Sbjct: 607 KVIIEHRGLSKLKSTYTDKLPLMVNEKTQRVHTSYHQAVTATGRLSSTDPNLQNIPIRS- 665 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA++G K+V AD + IE R++A ++ + Sbjct: 666 -----------------------EEGRRIREAFIAADGYKIVAADYSQIELRIMAHLSQD 702 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + AFANG D++ T A+ F +D V+ + R K + L Y A+ Sbjct: 703 KGLLNAFANGLDVHSATAAEVFGVDLDDVTTDMRRKAKAVNFGLIYGMSAFGLARQLDVP 762 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYP 490 + ++ + + + + + + + Sbjct: 763 RHEAQHYIDKYFERFPGVLEYMETTREKAAENGYVETIFGRRLHLPEINARNGARRKGAE 822 Query: 491 EFAVKDKLIGTACELVKKAWRAKH-------QGVLQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++KKA + + ++L + + ++ + Sbjct: 823 RAAINAPMQGTAADIIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCA 876 Score = 45.5 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNATKNGY-------DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M + + Y +++ VHDE+V E + +C LM++ Sbjct: 831 QGTAADIIKKAMLSVNQWVYEQAPNTVKLLMQVHDELVFEIKTDCAEAYTKQICELMSQA 890 >gi|300703485|ref|YP_003745087.1| DNA polymerase i (pol i) [Ralstonia solanacearum CFBP2957] gi|299071148|emb|CBJ42461.1| DNA polymerase I (POL I) [Ralstonia solanacearum CFBP2957] Length = 960 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 110/589 (18%), Positives = 193/589 (32%), Gaps = 96/589 (16%) Query: 6 IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60 ID ET S P+ VG+ + A V D Q A+ + + + Sbjct: 374 IDTETTSIDPMLAQLVGISLSVQPGRACYIPVAHRGPDVSGLDAAAQLSREAVLARMRLW 433 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L DE V + ++ +F GI + T + + + LA Sbjct: 434 LEDEIRSKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRNHGMDALAERVLH 491 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E C +D A EY D + T L + L P Sbjct: 492 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 539 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++ Q + G +D + + + + L+++ L Sbjct: 540 VAEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGHRLLALEQEAYALAG 599 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + F + +V + S + +LA+D L +L + Sbjct: 600 QPF-NLNSPKQIGEIFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 657 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 658 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 707 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G +V AD + IE R++A ++G+D ++AF Sbjct: 708 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSGDDGLMRAFR 752 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+D++ T A+ F +V+ EQR KV+ L Y A L + Sbjct: 753 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 812 Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498 ++ + + D + +H LW+ + A+ + Sbjct: 813 DRYFARYPGVARYMDETRQIAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 872 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 GTA +L+K + A +Q W + G + G + +R V V Sbjct: 873 QGTAADLIKLSMLA-----VQDWLE---GSPNADKPGTPMRSRLVMQVH 913 >gi|85710997|ref|ZP_01042058.1| DNA polymerase I [Idiomarina baltica OS145] gi|85695401|gb|EAQ33338.1| DNA polymerase I [Idiomarina baltica OS145] Length = 924 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 96/601 (15%), Positives = 197/601 (32%), Gaps = 113/601 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAM 53 + D ET S Y E A + +++ + + Sbjct: 345 IAFDTETTSLN---------YME-AQLVGVSFSIAEGEAVYIPVAHDYVGVEKQVDRDWL 394 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKNA 112 L L D ++ V N ++ + ++ GI + + T + + S Sbjct: 395 LKVLKPLLEDSSIAKVGQNLKYDAHILRRY-GIKLRGIK-NDTMLASYVFNSVGSRHDMD 452 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L+L + H E I N ++ Q Y D + T Sbjct: 453 TLSLQYLNHKPIKFE-----------EIAGKGAKQLTFNQIELAQA-APYAAEDADITLR 500 Query: 173 LFKRLIP------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L L+D E L + + + G ++D +++ K E IA + +L Sbjct: 501 LHHILWDKVHQTGEQLASVLTDIEVPLVSILTDMEEYGVKVDAEMLGKQSEEIANKLDEL 560 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ ++ + L+ LF + ++ + S + +LA D L Sbjct: 561 EQKAFEIAGEEF-NLGSPKQLQQILFEKLELPVIKKTPKGAPSTAEE-VLQELAHDYPLP 618 Query: 281 RLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + ++ KL + L ++ D GR+ + Q + TGR S QN+P + Sbjct: 619 DVILQHRSLAKLKSTYTDKLPRMINPDTGRVHTSYQ-QAVAATGRLSSTEPNLQNIPIRT 677 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 VR +A G +V D + IE R++A ++ Sbjct: 678 ------------------------PEGRRVRQAFVAEEGFTVVAIDYSQIELRIMAHLSQ 713 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 + ++AFA G+DI+ T ++ F +++V+ EQR K + L Y A + Sbjct: 714 DASLLRAFAQGQDIHRATASEVFGCSLEEVTDEQRRRAKAVNFGLIYGMSAFGLSRQLDI 773 Query: 451 MASHCGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQYPE------------------ 491 + ++ + E+ + ++ + Sbjct: 774 PRHEAQAYMDKYFERFPGVLEYMENTRETAKKQGYVSTLFGRRLPLPEIKASNGARRKAA 833 Query: 492 --FAVKDKLIGTACELVKKAW--------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K+A Q +++ + + ++ + S Sbjct: 834 ERAAINAPMQGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYA 893 Query: 542 R 542 + Sbjct: 894 K 894 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 16/78 (20%) Query: 603 QAISRDILCEGMKN----ATKNGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTK 653 Q + DI+ M + G +++ VHDE+V E S L +M + Sbjct: 843 QGTAADIIKRAMIKVGDWIDEKGCQSDVRMLMQVHDELVFEIRTEHAESYAKALADVMGE 902 Query: 654 NPSWAKGL--PLKAE-GY 668 A L PL AE G+ Sbjct: 903 ----AADLDVPLLAEYGF 916 >gi|262369822|ref|ZP_06063149.1| DNA polymerase I [Acinetobacter johnsonii SH046] gi|262314861|gb|EEY95901.1| DNA polymerase I [Acinetobacter johnsonii SH046] Length = 921 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 102/578 (17%), Positives = 205/578 (35%), Gaps = 80/578 (13%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + D ET S + V A+ A A+ +++ P +L ++ + + + Sbjct: 347 KRFAFDTETTSLDYRVAQIVGFSVAFDAQDAYYVPLAHDYENAPAQL----DREQILAQI 402 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLA 115 L DE+V + H+ ++ + + I K W ++LA N + + ++ Sbjct: 403 KPILEDESVQKIGHHLKYDAHVLENH---GIELKGWYFDTMLASYVLNAVATRHGMDDVS 459 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + HLT E GK + F + I++ + HV ++LF E ++ Sbjct: 460 RLYLSHLTTTFEQVAGKGAKQKTFNQIEIETAAHYAAEDAHV-TYRLF-EVLDAKLQKHP 517 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 EL L + E + + + + G +DL + +L A L+ I +L Sbjct: 518 ELVNIL---HNVEMPVARVLTIMEENGIELDLGFLDQLGIEFANTMANLESQITELAGQS 574 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL---AKDLILNRLASSGSA 288 + + LF G+ + T + S S + ++ +LIL+ S Sbjct: 575 F-NVSSPKQVGEILFDKLGLKGGKKT-ATGQYSTSESVLEKIDHPITELILDYRGLSKLK 632 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + +SD T + TGR S QN+P +E Sbjct: 633 STYTDGLLKQANSDTHRVHTSYHQALTATGRLSSTDPNLQNIPVRE-------------- 678 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R IA G+ L+ AD + IE R++A + ++ + AF +G+D+ Sbjct: 679 ----------EIGRQIRKAFIAPQGRVLLAADYSQIELRLMAHFSQDEALVDAFKHGQDV 728 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQ 464 + T A+ ++ V+ +QR K + L Y + + ++ Q Sbjct: 729 HRRTAAEVLGVALEDVTSDQRRQAKAVNFGLLYGMSEFGLTRQLGFSREESRGYIAKYFQ 788 Query: 465 NVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTAC 503 + + + + ++ A+ L G+A Sbjct: 789 RYPGVLDYMERTRQIAREQGFVETILGRRLYTPDIMASNKMIKQAAERAAINAPLQGSAA 848 Query: 504 ELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 +++K A A Q + ++ + + V E + Sbjct: 849 DIIKMAMIAVDQMLPKDQTKMLLQVHDELVFEVDESIA 886 >gi|16272796|ref|NP_439016.1| DNA polymerase I [Haemophilus influenzae Rd KW20] gi|260579947|ref|ZP_05847777.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] gi|1169402|sp|P43741|DPO1_HAEIN RecName: Full=DNA polymerase I; Short=POL I gi|1573871|gb|AAC22515.1| DNA polymerase I (polA) [Haemophilus influenzae Rd KW20] gi|260093231|gb|EEW77164.1| DNA-directed DNA polymerase I [Haemophilus influenzae RdAW] Length = 930 Score = 285 bits (728), Expect = 2e-74, Method: Composition-based stats. Identities = 95/532 (17%), Positives = 178/532 (33%), Gaps = 88/532 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + L + + + N F+ +F + GI++ + T +L+ T LA Sbjct: 409 IKPILENPNIHKIGQNIKFDESIFARH-GIELQGVEF-DTMLLSYTLNSTGRHNMDDLAK 466 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H T E A + + + + P + EY D + T +L + Sbjct: 467 RYLGHETIAFESLAGKGK-SQLTFNQIP-----------LEQATEYAAEDADVTMKLQQA 514 Query: 177 LIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L E L + + G ID D + IA L++ Sbjct: 515 LWLKLQEEPTLVELYKTMELPLLHVLSRMERTGVLIDSDALFMQSNEIASRLTALEKQAY 574 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T L+ LF + ++ + S + + +L+ L ++ Sbjct: 575 ALAGQPFNLA-STKQLQEILFDKLELPVLQKTPKGAPST-NEEVLEELSYSHELPKILVK 632 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+S GR+ + + TGR S QN+P + Sbjct: 633 HRGLSKLKSTYTDKLPQMVNSQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------ 685 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE R++A ++G+ I Sbjct: 686 ------------------NEEGRHIRQAFIAREGYSIVAADYSQIELRIMAHLSGDQGLI 727 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AF+ G+DI+ +T A+ F +D+V+ EQR K + L Y A + + Sbjct: 728 NAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGISRADA 787 Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494 + + Q S F S + + A+ Sbjct: 788 QKYMDLYFQRYPSVQQFMTDIREKAKAQGYVETLFGRRLYLPDINSSNAMRRKGAERVAI 847 Query: 495 KDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISAR 541 + GTA +++K+A + + ++ + + V+ R Sbjct: 848 NAPMQGTAADIIKRAMIKLDEVIRHDPDIEMIMQVHDELVFEVRSEKVAFFR 899 >gi|33152330|ref|NP_873683.1| DNA polymerase I [Haemophilus ducreyi 35000HP] gi|33148553|gb|AAP96072.1| DNA polymerase I [Haemophilus ducreyi 35000HP] Length = 962 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 99/555 (17%), Positives = 194/555 (34%), Gaps = 101/555 (18%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L + + V N ++ +F GI++ + T + + T LA Sbjct: 439 QLKPLLENVEIKKVGQNIKYDLTVFANH-GIELQGVAF-DTMLESYTLNSTGRHNMDELA 496 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +H T E GK F K +I++ EY D + T Sbjct: 497 ERYLDHKTIAFEDIAGKGKNQLTFDKIAIETA----------------TEYAAEDADITM 540 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L ++LI ++ E L + + G ID D +L + + Q ++ Sbjct: 541 KLHQQLITSLAKTPSLIKLFNEIEMPLVNVLARVEQNGVLIDSDKLLAQSKEMEQRLAEV 600 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LIL 279 + + + T L+ LF + ++ + S + + QLA+ ++ Sbjct: 601 EIAVHTAAGQAFNLA-STKQLQEILFEKLALPVLKKTPKGAPST-NEEVLEQLAQQGHLV 658 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L S A+ KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 659 PKLLSEHRALSKLKSTYTDKLPKMINQHTGRVHTSY-HQAVTTTGRLSSSDPNLQNIPIR 717 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + +R IA +G K+V AD + IE R++A +A Sbjct: 718 TEA------------------------GRRIRQAFIARDGYKIVAADYSQIELRIMAHLA 753 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ I AFANG+DI+ T A+ F + +V+ EQR K + L Y A Sbjct: 754 NDEGMITAFANGQDIHQATAAEIFGLSLAEVTSEQRRSAKAINFGLIYGMSDFGLANQLA 813 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + ++ Q + F + +S++ + Sbjct: 814 ISRDEAKEYMARYFQRYPNVQQFMRDIRESASVKGYVETLFGRRLYLPEIKSNNAIRRKA 873 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + GTA +++K A + + + ++ + + V + Sbjct: 874 AERLAINAPMQGTAADIIKIAMISIDKQIR---------ADQNIKMIMQVHDELIFEVKQ 924 Query: 549 LVMRRHKRDVHIVLP 563 + + + + Sbjct: 925 ECIEYYTGLIKTEME 939 >gi|304413771|ref|ZP_07395215.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] gi|304283862|gb|EFL92256.1| DNA polymerase I [Candidatus Regiella insecticola LSR1] Length = 937 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 95/575 (16%), Positives = 187/575 (32%), Gaps = 107/575 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P++L DRT + L L + V N F++ + + GI Sbjct: 372 AAYLPLAHDYSDAPIQL-DRT---LVLDKLKPLLENPQKQKVGQNLKFDKSILARC-GIV 426 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE-----GKALIARFCKGSID 141 + + T + + + L+ + +H T E GK+ + F + ++ Sbjct: 427 LQGIAF-DTMLESYILNTVAGRHDMDSLSQRYLQHKTITFEEIAGKGKSQLT-FNQIAL- 483 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLL 190 + Y D + T L L P + E L + Sbjct: 484 ---------------EQAAPYAAEDADITLRLHHCLWPQLQQSKALSWIFTHIEMPLLSV 528 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G ID ++ + + + +L+E L + + L+ L+ Sbjct: 529 LSRIESTGVLIDRAVLAQHSQELTTRLTELEEQAHLLAEEPFNLA-SPKQLQTILYEKQQ 587 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GR 304 + ++ + S + +LA D L ++ + KL + L ++ GR Sbjct: 588 LPVLKKTPKGAPST-DEEVLAELALDYPLAKVLLEYRGLAKLKTTYTDKLPSMINPTSGR 646 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 647 VHTSY-HQAVTVTGRLSSREPNLQNIPIRS------------------------EEGRRI 681 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R IA G +++ AD + IE R++A ++ + IKAF +DI+ T A+ FN ++ Sbjct: 682 RQAFIAPPGYQIIAADYSQIELRIMAHLSQDSGLIKAFTADKDIHRATAAEVFNVSVETA 741 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------ 474 + EQR K + L Y A+ + + + + + Sbjct: 742 TDEQRRSAKAINFGLIYGMSAFGLARQLGIARVEAQHYIDLYFARYPGVANYMEAIRKQA 801 Query: 475 ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + A+ + GTA +++K A Sbjct: 802 ATQGYVTTLSGRRLYLPDINASSAMRRKAAEREAINAPMQGTAADIIKSAMIEIDAWLQH 861 Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + ++Q+ +L V +G R + Sbjct: 862 QPLVRMIMQVHDELVFEVHESVVQGAVEKIRHLME 896 >gi|254281931|ref|ZP_04956899.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] gi|219678134|gb|EED34483.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR51-B] Length = 911 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 86/534 (16%), Positives = 177/534 (33%), Gaps = 96/534 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + P +L + + + L L + ++ + N ++ + GI Sbjct: 363 AAYVPLGHDYPGAPDQL----DFEQVLAKLKPILENADILKLGQNLKYDSNILCNH-GIT 417 Query: 88 IPSKRWICTSVLARTNG-LPSSLKNACLALNF---SEHLTKMEEGKALIAR-FCKGSIDS 142 + T + + + + LAL + + GK F + ++ Sbjct: 418 LRGI-TEDTMLESYVLDSVGTRHDMDSLALKYLGRGTTKFQDIAGKGAKQLTFNQIAL-- 474 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + Y D + T L + L P ++ E L + Sbjct: 475 --------------EQAAPYAAEDADVTLRLHEVLSPKLKAVPRLHQLYAELEVPLVAVL 520 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G I + +A + L+ +L + L LF G+ Sbjct: 521 SRIERNGAYISRQSLADHSHELAGRLESLEARAQELAGQAF-NLGSPKQLGEILFDKLGL 579 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRL 305 ++ + S + +LA+D L + ++ KL + L E + D GR+ Sbjct: 580 PVIKKTPKGAPSTAEE-VLLELAEDYPLPSVLMEYRSLSKLKSTYTDRLPEVIDPDTGRV 638 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 639 HTSY-HQAVTATGRLSSSDPNLQNIPIRT------------------------EEGRRIR 673 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G++++ AD + IE R++A ++ + ++AF+ G D++ T A+ F ++ V+ Sbjct: 674 QAFVAPEGRRILAADYSQIELRIMAHLSRDAGLLRAFSEGLDVHSATAAEVFGVELNDVT 733 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 +QR K + L Y A+ ++++ + + +AE+H Sbjct: 734 VDQRRKAKAINFGLIYGMSAFGLARQLHIGRGEAQEYIERYFSRYPGVADYMARTRAEAH 793 Query: 482 HLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAKH 514 + + A+ + GTA +++KKA A Sbjct: 794 ERGYVETHFGRRLQLPEINAKNKQRQLAAERTAINAPMQGTAADIIKKAMIAVD 847 Score = 41.3 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ + M +++ VHDE+V E +T + L SLM Sbjct: 832 QGTAADIIKKAMIAVDAWLQDSSLDALLIMQVHDELVFEVAETAVAQLSEALPSLMADV 890 >gi|297537593|ref|YP_003673362.1| DNA polymerase I [Methylotenera sp. 301] gi|297256940|gb|ADI28785.1| DNA polymerase I [Methylotenera sp. 301] Length = 928 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 106/583 (18%), Positives = 190/583 (32%), Gaps = 109/583 (18%) Query: 2 SKLFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + D ET S P+ VG+ E A + + D P +L D E A + Sbjct: 351 KLMCFDTETTSLDPMTAKIVGMSFSVEAGSAAYLPLKHDYFDAPEQL-DFVETLAKIKPI 409 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-- 115 L + + V N +++ + GI + T + + + LA Sbjct: 410 ---LENAAIKKVGQNFKYDQHVLANH-GIALNGIA-HDTMLESYVFESHKTHGMDALAER 464 Query: 116 -LNFSEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L + GK F + ++ ++ EY D + T +L Sbjct: 465 HLGIQTISFEEVAGKGAKQVTFNQVTV----------------EVASEYAAEDADITLQL 508 Query: 174 FKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + P S E + TI G ID D++ I + L+ Sbjct: 509 HQAMYPQISTDAKLDFIYSQIEMPSSQILFTIERNGVLIDRDMLNIQSNEIGAKLVALEN 568 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 +L + L+ LF GI + S + +LA D L ++ Sbjct: 569 QAYELAGQPF-NLGSPKQLQEILFDKLGIKPTKKTPSGAPST-DEDVLQELALDHPLPKV 626 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L + +++ GR+ + + TGR + QN+P + Sbjct: 627 LLEYRGLAKLKSTYTDKLPKMINAQTGRVHTSYN-QAVAITGRLASSDPNLQNIPVRS-- 683 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G +V AD + IE R++A ++ ++ Sbjct: 684 ----------------------AEGRRIREAFIAPKGSHIVSADYSQIELRIMAHLSKDE 721 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + AFAN EDI+ T A+ F + V EQR KV+ L Y A+ Sbjct: 722 GMLAAFANNEDIHRHTAAEIFGVERENVDSEQRRYAKVINFGLIYGMSAFGLAQNLNIER 781 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PE 491 ++++ + + + + Y Sbjct: 782 GAAASYIERYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWVPEINSPNGTRRAGAER 841 Query: 492 FAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 A+ + GTA +L+K A A + ++Q+ +L Sbjct: 842 AAINAPMQGTAADLIKLAMIAVDKWLRHEKLQTKLIMQVHDEL 884 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 43/135 (31%), Gaps = 16/135 (11%) Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + G A E V + K+ ++ RRL ++ S T Sbjct: 779 IERGAAASYIERYFARYPGVREYMQNTREIAKQKGYVETYFGRRLWVPEI---NSPNGTR 835 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETP 637 + R +Q + D++ M K +++ VHDE+V E P Sbjct: 836 RAGAERAAINAP------MQGTAADLIKLAMIAVDKWLRHEKLQTKLIMQVHDELVLEVP 889 Query: 638 DTPYFSVGT-LCSLM 651 D V L LM Sbjct: 890 DNELELVKQKLPELM 904 >gi|192361143|ref|YP_001983931.1| DNA polymerase I [Cellvibrio japonicus Ueda107] gi|190687308|gb|ACE84986.1| DNA polymerase I [Cellvibrio japonicus Ueda107] Length = 937 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 104/581 (17%), Positives = 192/581 (33%), Gaps = 110/581 (18%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S + V V A C + + P +L + + L Sbjct: 362 SFDTETTSLDVMEARIVGVSVATEPGVAAYIPCGHDYMGAPEQL----SLEWVLNQLKPL 417 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACLALNFS 119 L DE + + N ++R + GI + ++ T + + N + S LA + Sbjct: 418 LEDEHKIKIGQNIKYDRSVLLNY-GITLRGIKY-DTMLESYVWNSVASRHNMDDLAQTYL 475 Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ T E GK + F + I+ + Y D + T L + Sbjct: 476 DYKTVTFEELAGKGVKQLTFNQLKIEDAGH----------------YAAEDADITLRLHQ 519 Query: 176 RLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P + E L + I G +D L+ + + + +L+ Sbjct: 520 FFWPQLQQQSGLCKVFREIEMPLVPVLSHIERNGALVDAKLLGQHSIELGERMVQLERKA 579 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L S L + LF + ++ + S + +LA D L ++ Sbjct: 580 YELAGQEFNLS-SPKQLGVILFEQLQLPVIKKTPTGTPSTAEE-VLQELALDYPLPKVIM 637 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 A+ KL + L ++ GR+ + TGR S QN+P + Sbjct: 638 EYRAMAKLKSTYTDKLPLMINPATGRIHTNY-HQAVAATGRLSSQDPNLQNIPIKT---- 692 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G KLV AD + IE R++A ++ + Sbjct: 693 --------------------DEGRRIRQAFIAPAGYKLVAADYSQIELRIMAHLSSDSGL 732 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF G D++ T A+ F +D V+ E R K + L Y AK + Sbjct: 733 LSAFEKGLDVHRATAAEVFGVALDSVTPEMRRSAKAINFGLIYGMSAFGLAKQLHVGRNE 792 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ + + + +A++H + A Sbjct: 793 AQQYIDRYFERYPGVQRYMNNIRAQAHEQGYVETLFGRRLYLPDINAKNKNFQLAAERTA 852 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + + GTA +++K A A + ++Q+ +L Sbjct: 853 INAPMQGTAADIIKTAMIAVDNWLVEAGLDAKLIMQVHDEL 893 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 9/52 (17%) Query: 603 QAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 Q + DI+ M G D +++ VHDE+V E ++ + +C Sbjct: 858 QGTAADIIKTAMIAVDNWLVEAGLDAKLIMQVHDELVLEVAES---CLDEVC 906 >gi|30249439|ref|NP_841509.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] gi|30138802|emb|CAD85379.1| polA; DNA polymerase I protein [Nitrosomonas europaea ATCC 19718] Length = 912 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 107/601 (17%), Positives = 200/601 (33%), Gaps = 109/601 (18%) Query: 5 FIDIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID ET S P+ VG+ E QA A+ + P +L + + L + Sbjct: 338 SIDTETTSLNPMEAKLVGLSFCMELGQAAYIPLAHHYPGVPSQL----NREQVLQRLKPW 393 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LNFS 119 L + + + N ++R +F G+ + T + + S LA + Sbjct: 394 LESDEKLKIGQNLKYDRHVFANH-GVMLNGI-VHDTLLQSYVLESHLSHDLDSLASRHLG 451 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +E GK F + I G Y D + L + Sbjct: 452 IQTISYDEVTGKGAKRIGFEQVEI----------------HRAGIYAAEDADIPLRLHRV 495 Query: 177 LIPL-----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P+ E L + I G +D DL+ + Q+ L++ Sbjct: 496 LYPVISQDAHLEYIYQQIEIPLLEVLFRIERNGVLLDTDLLRVQSGELTQQLVALEQQAH 555 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T ++ LF + ++ + + S + +LA D L ++ Sbjct: 556 SLAGHAF-NLNSTKQIQEILFGQHKLPVIKKTPKGVPST-DEEVLQRLASDYPLPKVLLD 613 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+ GR+ + TGR + QN+P + Sbjct: 614 YRGLAKLKSTYIDKLPQMVNKQTGRVHTHYA-QAVAVTGRLASNDPNLQNIPVRT----- 667 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA +G ++ AD + IE R++A I+G+ I Sbjct: 668 -------------------PEGRRIREAFIAPDGWLIMSADYSQIELRIMAHISGDAGLI 708 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AF+ G+DI+ T A+ F P+++V+ EQR KV+ L Y A + Sbjct: 709 HAFSEGQDIHRATAAEVFGVPVEQVNPEQRRYAKVINFGLIYGMSEFGLATQLGIERTAA 768 Query: 456 GLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQ--------------------YPEFAV 494 + ++ + + + H +++ A+ Sbjct: 769 RTFIDRYFARYPGVADYMQRTRELAKQHGYVETVLGRRLQLSDIRSNQRNRQMGAERAAI 828 Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + GTA +++K A + H + ++Q+ +L + R+ Sbjct: 829 NAPMQGTAADIIKLAMISVHRWLAEAQLQSKLIMQVHDELVLEVLVDELPVIKENLPRLM 888 Query: 545 N 545 Sbjct: 889 E 889 >gi|254483343|ref|ZP_05096574.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] gi|214036438|gb|EEB77114.1| DNA polymerase I superfamily protein [marine gamma proteobacterium HTCC2148] Length = 896 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 97/585 (16%), Positives = 185/585 (31%), Gaps = 122/585 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDLLQY- 60 D ET S Y E A + ++A + + D + Sbjct: 323 DTETTSLN---------YME-AKVVGVSFAIEAGKAAYVPLAHDYLGAPEQLDRDAVLAQ 372 Query: 61 ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115 L D V N ++ + GI + + T + + + LA Sbjct: 373 MKPLLEDPNQAKVGQNLKYDASVLANH-GIALKGIDY-DTMLESYVLDSTATRHDMDSLA 430 Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + T + GK F + + + G Y D + T Sbjct: 431 LKYLGQNTIHFEDIAGKGAKQLTFNQVKV----------------EEAGPYAAEDADITL 474 Query: 172 ELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L P D E L + I +G + +++ + + ++L Sbjct: 475 RLHQALWPKLEELSSLLPVFRDIELPLVPVLSKIERQGALLSCEMLHQQSTELGLRLEEL 534 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 +L + L LF + ++ + S + +LA D L Sbjct: 535 KSAAYELAGQEF-NLGSPKQLGEILFEKLELPIIKKTPKGAPSTAEE-VLVELALDYPLP 592 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L ++ KL + L V+ GR+ + + TGR S QN+P + Sbjct: 593 KLLLEYRSLSKLKSTYTDKLPGMVNPQTGRVHTSY-HQAVAATGRLSSSDPNLQNIPIRT 651 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G ++V AD + IE R++A ++ Sbjct: 652 ------------------------EEGRRIRQAFIAPQGFRIVAADYSQIELRIMAHLSD 687 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AF G+D++ T A+ F +D+VS +QR K + L Y AK Sbjct: 688 DPSLLTAFKEGQDVHRATAAEVFEVSLDEVSGDQRRKAKAINFGLIYGMSAFGLAKQLHL 747 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQY 489 + ++ + + + D +A + + Sbjct: 748 GRHEAQEYIDRYFERYPGVAQYMDRTRAIAKEQGFVETLFGRRLYLPEINARNKMRVQAA 807 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQ----------GVLQLWKDL 524 A+ + G+A +++K+A + Q ++Q+ +L Sbjct: 808 ERTAINAPMQGSAADIIKRAMLSVDQWLEQGDANARMIMQVHDEL 852 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 7/70 (10%) Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655 Q + DI+ M + +++ VHDE+V E + +V +C LM+ Sbjct: 817 QGSAADIIKRAMLSVDQWLEQGDANARMIMQVHDELVLEVANDEVDAVSNQVCRLMSGAA 876 Query: 656 SWAKGLPLKA 665 A L ++A Sbjct: 877 ELAVPLLVEA 886 >gi|328545870|ref|YP_004305979.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] gi|326415610|gb|ADZ72673.1| DNA polymerase I [Polymorphum gilvum SL003B-26A1] Length = 994 Score = 284 bits (727), Expect = 3e-74, Method: Composition-based stats. Identities = 97/548 (17%), Positives = 177/548 (32%), Gaps = 99/548 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L D V+ +A N ++ ++ + G++I G + + Sbjct: 466 DVLRPMLEDAGVLKIAQNLKYDWLVMARY-GVEIAPYDDTMLLSYVLDAGKGGNGMDELA 524 Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 +E GKA++ F K ID Y D + T Sbjct: 525 ERWLDHTPIPFKEVAGSGKAMVT-FDKVPIDKA----------------TAYAAEDADVT 567 Query: 171 RELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L++ L P ER + + + RG +D ++ +L AQ L Sbjct: 568 LRLWRVLKPRLVAERMATVYETLERPMVPVLARMERRGISVDRQMLSRLSGDFAQGMAAL 627 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LIL 279 + +I L + L LF G+ ++ T S S + LA + L Sbjct: 628 EAEIHALAGESF-NIGSPKQLGDILFGKMGLPGGKKTK-TGAWSTSVSVLDDLAAEGHEL 685 Query: 280 NRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + + KL + L + + + T ++ TGR S QN+P + Sbjct: 686 PSKIVAWRQLSKLKSTYSDALPSYIHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT 745 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A G+KL+ AD + IE RVLA +A Sbjct: 746 ------------------------EEGRKIRKAFVADKGRKLISADYSQIELRVLAHMAD 781 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 +AFA+G DI+ T ++ F PI+ + R K + + Y G A Sbjct: 782 IPQLKQAFADGLDIHAMTASEMFGVPIEGMDPMVRRRAKAINFGIIYGISAFGLAAQLGL 841 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 G ++ + + + + + + + ++ Y Sbjct: 842 SRGEAGDYIKTYFERFPGIRDYMEAIKKEVHTKGYVTTVFGRKAHYPDVNTSNPSLRAFY 901 Query: 490 PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSIS 539 A+ + G+A +++++A + +LQ+ +L E Sbjct: 902 ERAAINAPIQGSAADIIRRAMVRMDAALAAAKLDAEMLLQVHDELIFEVPEDQVEATIPV 961 Query: 540 ARRVANVP 547 RRV Sbjct: 962 VRRVMETA 969 >gi|300690852|ref|YP_003751847.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] gi|299077912|emb|CBJ50551.1| DNA polymerase I (POL I) [Ralstonia solanacearum PSI07] Length = 944 Score = 284 bits (726), Expect = 3e-74, Method: Composition-based stats. Identities = 110/589 (18%), Positives = 193/589 (32%), Gaps = 96/589 (16%) Query: 6 IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ---SAMPSDLLQY 60 ID ET S P+ VG+ + A V D Q A+ + + + Sbjct: 358 IDTETTSIDPMLAQLVGISLSVQPGQACYIPVAHRGPDVSGLDNAAQLSREAVLARMKLW 417 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L DET V + ++ +F GI + T + + + LA Sbjct: 418 LEDETRKKVGQHLKYDAHVFANH-GIALRGIA-HDTMLQSYVLASHRNHGMDALAERVLH 475 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E C +D A EY D + T L + L P Sbjct: 476 LKTITYE------EVCGKGAAQIGFD------EVALDRATEYAAEDADITLRLHRALYPK 523 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++ Q + G +D + + + + Q +L++ L Sbjct: 524 VTEDDKLRYVYEQIEMPTSIVLQKMERNGVLVDAERLARQSAELGQRLLELEQQAFALAG 583 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + F + +V + S + +LA+D L +L + Sbjct: 584 QPF-NLNSPKQIGELFFTQLKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDFRGL 641 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 642 AKLKSTYTDKLPKMVNPQTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT--------- 691 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G +V AD + IE R++A ++ ++ ++AF Sbjct: 692 ---------------EEGRRIREAFVAPAGSVIVSADYSQIELRIMAHLSEDEGLMRAFR 736 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+D++ T A+ F +V+ EQR KV+ L Y A L + Sbjct: 737 EGQDVHRATAAEVFGVTPLEVTAEQRRYAKVINFGLIYGMSAFGLASNLGIGRDAAKLYI 796 Query: 460 QQFSQNVKSTSTFEDWEQAESH-----------HLWM----------QDQYPEFAVKDKL 498 ++ + + D + +H LW+ + A+ + Sbjct: 797 DRYFARYPGVARYMDETRQVAHERGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAPM 856 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 GTA +L+K + A +Q W + G + G + R V V Sbjct: 857 QGTAADLIKLSMLA-----VQDWLE---GSPNAGKPGVPMRTRLVMQVH 897 >gi|170717348|ref|YP_001784457.1| DNA polymerase I [Haemophilus somnus 2336] gi|168825477|gb|ACA30848.1| DNA polymerase I [Haemophilus somnus 2336] Length = 951 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 97/541 (17%), Positives = 184/541 (34%), Gaps = 100/541 (18%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNGLPS 107 + + L L + ++ + N ++ +F + ++ T + + Sbjct: 422 NKETCLAQLKPLLENPSIQKIGQNIKYDLTIFANHHIQLNGVCFD---TMLQSYVLDSTG 478 Query: 108 SLKNACLALNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L+ + H E GK + F K +I EY Sbjct: 479 RHNMGALSERYLGHQVIEFESIAGKGKKQVT-FDKIAI----------------AQATEY 521 Query: 163 CKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 D + T +L + L +D E L + T+ G ID +LK E Sbjct: 522 AAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSTMERNGVLIDSQALLKQSE 581 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 IA+ L++ + + + T L+ LF + ++ + S + + Sbjct: 582 KIARRLTALEQQVYQEAGAEFNLA-STKQLQEILFTKLALPIIAKTPKGAPST-NEDVLE 639 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 LA+ I+ +L + KL + L V+ GR+ + + TGR S Sbjct: 640 TLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSY-HQAVTATGRLSSSD 698 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P C+R IA G K++ AD + I Sbjct: 699 PNLQNIP------------------------IKNEEGRCIRQAFIARKGYKIIAADYSQI 734 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A ++ ++ I AF G+DI+ +T A+ F P+++V+ EQR K + L Y Sbjct: 735 ELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMS 794 Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------ 488 + ++ + + Q TF + ++ + Sbjct: 795 SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEIN 854 Query: 489 ---------YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEG 535 A+ + GTA +++K A A H + +Q+ + + V+E Sbjct: 855 SSNAIRRKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDIQMIMQVHDELVFEVKEN 914 Query: 536 G 536 Sbjct: 915 K 915 >gi|212711548|ref|ZP_03319676.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] gi|212685650|gb|EEB45178.1| hypothetical protein PROVALCAL_02622 [Providencia alcalifaciens DSM 30120] Length = 934 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 98/601 (16%), Positives = 195/601 (32%), Gaps = 99/601 (16%) Query: 2 SKLF-IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 S LF D ET S L + A +A + + D P +L + + Sbjct: 353 STLFAFDTETDSLDTQEARLVGMSFAIEAGRAAYLPVGHDYLDAPAQL----SLDEVIAV 408 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLKNACLA 115 + L +E + + N ++ + L DI K T + + + + + Sbjct: 409 MKPILENEKIGKIGQNLKYDAEVL---LNYDIELKGIAFDTMLESYVLNSVAGMGRHDMD 465 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 HL IA K + + + Y D + T L + Sbjct: 466 SLADRHLNHKTVSFEEIAGKGKKQLTF---------NQIPLEQAANYAAEDADVTLLLHQ 516 Query: 176 RLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P + E L + + +G ID ++ ++I +L++ Sbjct: 517 ALYPQLESEPKLAHVFQNIEMPLVPVLVRMERKGVLIDAAVLTAQSQVITARLAELEKQA 576 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L + L+ LF + ++ + S + + +LA + L +L Sbjct: 577 FDLAGEEFNLA-SPKQLQTILFEKLQLPVIKKTPSGAAST-NEEVLEELALNHALPKLLL 634 Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ KL + L ++ + T + TGR S QN+P + Sbjct: 635 EHRSLAKLKSTYTDKLPLMINPRTQRVHTSYHQAVTATGRLSSRDPNLQNIPVRT----- 689 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A +G K++ AD + IE R++A ++ + + Sbjct: 690 -------------------EEGRRIRQAFVARDGYKVMAADYSQIELRIMAHLSQDKGLL 730 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AFA G+DI+ T A+ F P+++V+ +QR K + L Y A+ Sbjct: 731 TAFAQGKDIHRATAAEVFGVPLEEVTSDQRRSAKAINFGLIYGMSAFGLARQLGIPRGEA 790 Query: 456 GLDLQQFSQNVKSTSTFEDWEQ---------------------AESHHLWMQDQYPEFAV 494 + + + + + + +S + + A+ Sbjct: 791 QRYMDLYFERYPGVLRYMENTRLQASERGYVETLEGRRLYLADIKSSNGMRRKAAEREAI 850 Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + GTA +++KKA A ++Q+ +L E + + Sbjct: 851 NAPMQGTAADIIKKAMIAVDNWLETEKPSADMLMQVHDELVFEVKESELEKVQAKVQELM 910 Query: 545 N 545 Sbjct: 911 E 911 >gi|222147240|ref|YP_002548197.1| DNA polymerase I [Agrobacterium vitis S4] gi|221734230|gb|ACM35193.1| DNA polymerase I [Agrobacterium vitis S4] Length = 992 Score = 284 bits (726), Expect = 4e-74, Method: Composition-based stats. Identities = 96/517 (18%), Positives = 179/517 (34%), Gaps = 86/517 (16%) Query: 49 EQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 ++ +P D L L D +V+ VA N ++ ++ K+ GI I Sbjct: 451 AENQIPMDAALTALKGLLEDASVLKVAQNLKYDYLVMKRH-GIVIRGFDDTMLLSYVLEA 509 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 G+ + ++ +E +A K + D +A Y Sbjct: 510 GVGAHGMDSLSERWLGHTPIPYKE----VAGSGKSLVTFDLVDIDKATA---------YA 556 Query: 164 KRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L+ L P ER L + + +RG ID ++ +L + Sbjct: 557 AEDADVTLRLWLVLKPRLAAVGLARVYERLERPLVPVLADMEERGITIDRQILSRLSGEL 616 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 AQ+ +++I +L + L LF + ++ T + S + L Sbjct: 617 AQKAAAFEDEIYELAGERF-NVGSPKQLGDILFGRMNLPGGSKTK-TGQWSTSAQVLEDL 674 Query: 274 AKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 A L R + KL + L V + T A+ TGR S Sbjct: 675 AAQGEPLPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSMAATTTGRLSSSEPNL 734 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R+ I++ G KL+ AD + IE R Sbjct: 735 QNIPVRT------------------------AEGRKIRTAFISTPGHKLLSADYSQIELR 770 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443 VLA +A +AFA+G DI+ T ++ F P+D + E R K + + Y G Sbjct: 771 VLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEVRRRAKAINFGIIYGISAFG 830 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482 A + G ++++ + + + + + +S + Sbjct: 831 LANQLSIERAEAGEYIKKYFERFPGIKDYMESTKAFVREHGYVETIFGRRAHYPEIKSSN 890 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 M+ A+ + G+A +++++A + + Sbjct: 891 PSMRAFNERAAINAPIQGSAADVIRRAMVQVEPALAK 927 >gi|149908537|ref|ZP_01897199.1| DNA polymerase I [Moritella sp. PE36] gi|149808371|gb|EDM68308.1| DNA polymerase I [Moritella sp. PE36] Length = 931 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 101/582 (17%), Positives = 200/582 (34%), Gaps = 99/582 (17%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + VG+ +A AE +A A+ + D P +L ++ + + L L Sbjct: 357 DTETTSLNYIQAELVGLSFAVAEGEAAYLPVAHDYIDAPEQL----DRDHVLASLKTLLE 412 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEH 121 D V N +++ + GI++ + T + + N + + LA + H Sbjct: 413 DSNAKKVGQNLKYDKSVLANY-GINLAGIAY-DTMIESYVYNSIATRHDMDSLADKYLGH 470 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 T E I N ++ + Y D + T L L P Sbjct: 471 KTISFE-----------EIAGKGKKQLTFNQIEL-EQASAYAAEDADVTLRLHNVLWPKI 518 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ E L + ++ +G ID + + +L+ ++ + Sbjct: 519 EAEPSLVALFNEVELPLVSILSSVERQGVLIDKSKLDAQSVELGARMLELEAKAHEIAEQ 578 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 S L+ LF+ + ++ + S + + +LA + L ++ ++ Sbjct: 579 PFNLS-SPKQLQEILFVKMELPVIKKTPKGAAST-AEDVLQELALNYPLPKIILEYRSLS 636 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + GR+ + + TGR S QN+P Sbjct: 637 KLKSTYTDKLPTLIEEKTGRVHTSY-HQAVTATGRLSSSDPNLQNIP------------- 682 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + GE +R I G K V D + IE R++A ++ + + AF+ Sbjct: 683 --VRAGE---------GRRIRQAFIPETGYKYVAVDYSQIELRIMAHLSQDKGLLTAFSE 731 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460 G+DI+ T A+ F+ +D V+ +QR K + L Y A + + Sbjct: 732 GKDIHRATAAEVFSVELDDVTSDQRRSAKAINFGLIYGMSAFGLGRQLNIPQKEAKKYMT 791 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 ++ + T+ D + + + Q A+ + Sbjct: 792 RYFERYPGVLTYMDETRKVAKDKGYVETLSGRRLYLPEINARNKMSQMAAERAAINAPMQ 851 Query: 500 GTACELVKKAWRA-------KHQGVLQLWKDLTEGFACVVQE 534 GTA +++KKA +++ + + ++E Sbjct: 852 GTASDIIKKAMINVAGWMETVETNSIRMLMQVHDELVFEIKE 893 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 Q + DI+ + M N N +++ VHDE+V E + + V + LM Sbjct: 851 QGTASDIIKKAMINVAGWMETVETNSIRMLMQVHDELVFEIKEEHVEAYVVKIKELMAAA 910 Query: 655 PSWAKGLPLKAE 666 S +PL AE Sbjct: 911 MS--LDVPLLAE 920 >gi|313111566|ref|ZP_07797365.1| DNA polymerase I [Pseudomonas aeruginosa 39016] gi|310883867|gb|EFQ42461.1| DNA polymerase I [Pseudomonas aeruginosa 39016] Length = 913 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 100/589 (16%), Positives = 194/589 (32%), Gaps = 121/589 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-- 56 + D ET S A+QA + ++A + + D Sbjct: 334 IAFDTETTS-ID---------AQQAQVVGVSFAVKEGEAAYVPLAHSYMGVPEQLDRDAV 383 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNA 112 L L D + V ++ ++ + T + + + Sbjct: 384 LRALKPLLEDPKKLKVGQHAKYDINVLANASTPIALRGVAYDTMLESYVLDSTATRHDMD 443 Query: 113 CLALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LAL + H T + GK F + +I + G Y D + Sbjct: 444 SLALKYLGHSTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDAD 487 Query: 169 ATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L L+D E L + I G +D +L+ + ++ Sbjct: 488 VTLRLHQALWQKLEAIPSLARVLTDIEMPLVPVLARIERNGALVDANLLGIQSRELGEKM 547 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-D 276 L+ L + L L+ G+ ++ + T + + + + +LA+ D Sbjct: 548 VALERQAYDLAGQEF-NLGSPKQLGAILYDKLGLPVLSKT-ATGQPSTAEAVLAELAEQD 605 Query: 277 LILNRLASSGSAILKLNT-----LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L ++ ++ KL + L E ++ GR+ + + TGR S QN+ Sbjct: 606 FELPKVIMQYRSMSKLKSTYTDRLPEQINLRTGRIHTSY-HQAVAATGRLSSSDPNLQNI 664 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G KL+ AD + IE R++A Sbjct: 665 PIRT------------------------AEGRRIRQAFVAPQGYKLLAADYSQIELRIMA 700 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 +A +D + AF + D++ T A+ F P++ V+ +QR K + L Y AK Sbjct: 701 HLAKDDGLLDAFRHDLDVHRATAAEVFGVPLEDVNGDQRRSAKAINFGLIYGMSAFGLAK 760 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485 + ++ + + +A++ + M Sbjct: 761 QIGVERKEAQAYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPEIHSKNGAM 820 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + A+ + GTA +++K+A A + +LQ+ +L Sbjct: 821 RKAAERTAINAPMQGTAADIMKRAMVAVDNWLQESGLDARVILQVHDEL 869 >gi|110835520|ref|YP_694379.1| DNA polymerase I [Alcanivorax borkumensis SK2] gi|110648631|emb|CAL18107.1| DNA polymerase I [Alcanivorax borkumensis SK2] Length = 956 Score = 283 bits (725), Expect = 5e-74, Method: Composition-based stats. Identities = 97/579 (16%), Positives = 188/579 (32%), Gaps = 110/579 (18%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V +++A + + P ++ ++ + L Sbjct: 383 DTETTSLNYMNAELVGFAVAV-SDKAAYIPFGHNYPGAPDQI----DKQLVIDKFKPLLE 437 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 D+++ + N ++ + + GI + + T + + + + LAL + Sbjct: 438 DDSLKKIGQNLKYDMSVLAEDAGITLRGVAF-DTMLESYVLDSVATRHDMDSLALKYLGR 496 Query: 122 LT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 T GK F + + Y D + T L + L Sbjct: 497 KTISFTDIAGKGAKQLTFNQIGL----------------HEASPYAAEDADVTLRLHQTL 540 Query: 178 IPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P D E L + I G +D L+ + +A+ +L E Sbjct: 541 WPKLEAEDRLPEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQEKAFD 600 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + L L+ I ++ + S + + + +LA D L ++ Sbjct: 601 IAGQEFNLA-SPKQLGEILYEKLEIPVIKKTPKGAPST-AEAVLQELAHDYPLPQVIMDY 658 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L E ++ GR+ + + TGR S QN+P + Sbjct: 659 RGVAKLKNTYTDKLPELINQRTGRVHTSY-HQAVTATGRLSSSDPNLQNIPVRS------ 711 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A GKK+V D + IE R++A ++G+ Sbjct: 712 ------------------EEGRKIRQAFLAPKGKKIVACDYSQIELRIMAHLSGDKGLTD 753 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AF G DI+ T A+ + +D+VS R K + L Y AK Sbjct: 754 AFEQGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKEAQ 813 Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVK 495 + + + + + +A + + + A+ Sbjct: 814 EYIDLYFERYPGVKKYMEDTRALAIDKGYVETVYGRRLYLPEIHSKNGQRRQGAERAAIN 873 Query: 496 DKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + GTA +++KKA H + ++Q+ +L Sbjct: 874 APMQGTAADIIKKAMIKVHDWLETTHFDAKMIMQVHDEL 912 >gi|121999199|ref|YP_001003986.1| DNA polymerase I [Halorhodospira halophila SL1] gi|121590604|gb|ABM63184.1| DNA polymerase I [Halorhodospira halophila SL1] Length = 904 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 102/605 (16%), Positives = 197/605 (32%), Gaps = 105/605 (17%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID+ET S + V + QA A+ P +L ++ + L Sbjct: 328 SIDLETNSLNYMDAEIVGVSLAVEPGQAAYLPVAHCGPGAPDQL----DRDRVLDALRPL 383 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L E + N ++ + + GI++ + + + + L + + Sbjct: 384 LEAEQPEKMGQNLKYDMSVLARY-GIELRGVAY-DSMLESYV------LDSTATRHDMDS 435 Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 +K G + + C + P+ + G Y D + L + L Sbjct: 436 LASKYL-GVEVTSYEQLCGKGVRQVPFAEIDV------ERAGHYAAEDADIALRLHQLLY 488 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P S E L + + G R+D DL+ + E +A ++++ + Sbjct: 489 PRLQAESGLLRVFSQLEMPLLPVLSRMERHGVRVDCDLLERQSEELAGRMAEVEQRAHEE 548 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + ++ F G+ ++ + S A+ L RL Sbjct: 549 AGEAF-NLGSPKQIQEIFFERMGLPVIQRTPKGQPSTAESVLEELSARGHELPRLILEHR 607 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + + D GR+ + + TGR S QN+P + Sbjct: 608 GLSKLKSTYTDKLPQLIHRDTGRVHTSY-HQAVAATGRLSSSDPNLQNIPVRT------- 659 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +AS G +L+ AD + +E R++A ++G++ +A Sbjct: 660 -----------------PEGRRIRKAFVASPGHRLITADYSQVELRIMAHLSGDEGLRRA 702 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGL 457 F GEDI+ T A+ F D+V+ EQR K + L Y A + Sbjct: 703 FEQGEDIHRATAAEVF--AADEVNDEQRRAAKAINFGLIYGMSAWGLGRQLGIPRDEAQT 760 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + ++ + F D + S + ++ A+ Sbjct: 761 YIDRYFERYPGVRAFMDRAREQAREQGYVETVFGRRLHVPEIHSRNRQRREYAERTAINA 820 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + GTA +++K+A + V+Q+ +L RR+ Sbjct: 821 PMQGTAADVIKRAMIDVDALLNERFPESRLVMQVHDELVLEVPEAQATAVGDEVRRLMEG 880 Query: 547 PRLVM 551 M Sbjct: 881 SDRGM 885 >gi|113460863|ref|YP_718930.1| DNA polymerase I [Haemophilus somnus 129PT] gi|112822906|gb|ABI24995.1| DNA polymerase I [Haemophilus somnus 129PT] Length = 951 Score = 283 bits (724), Expect = 6e-74, Method: Composition-based stats. Identities = 97/541 (17%), Positives = 183/541 (33%), Gaps = 100/541 (18%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNGLPS 107 + + L L + ++ V N ++ +F + ++ T + + Sbjct: 422 NKETCLAQLKPLLENPSIQKVGQNIKYDLTIFANHHIQLNGVCFD---TMLQSYVLDSTG 478 Query: 108 SLKNACLALNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L+ + H E GK + F K +I EY Sbjct: 479 RHNMGALSERYLGHQVIEFESIAGKGKKQVT-FDKIAI----------------AQATEY 521 Query: 163 CKRDVEATRELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 D + T +L + L +D E L + + G ID +LK E Sbjct: 522 AAEDADITMKLHQVLWQELQQSPSLVKVFNDIELPLVKVLSKMERNGVLIDSQALLKQSE 581 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 IA+ L++ + + + T L+ LF + ++ + S + + Sbjct: 582 KIARRLTALEQQVYQEAGAEFNLA-STKQLQEILFTKLALPIIAKTPKGAPST-NEDVLE 639 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 LA+ I+ +L + KL + L V+ GR+ + + TGR S Sbjct: 640 TLAQQGHIVPKLLMEHRGLAKLKSTYTDKLPSMVNKKTGRVHTSY-HQAVTATGRLSSSD 698 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P C+R IA G K++ AD + I Sbjct: 699 PNLQNIP------------------------IKNEEGHCIRQAFIARKGYKIIAADYSQI 734 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R++A ++ ++ I AF G+DI+ +T A+ F P+++V+ EQR K + L Y Sbjct: 735 ELRIMAHLSQDNGLIMAFNEGKDIHRSTAAEIFGIPLNEVTSEQRRSAKAINFGLIYGMS 794 Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------ 488 + ++ + + Q TF + ++ + Sbjct: 795 SFGLSNQLGISRANAQKYMDLYFQRYPGVQTFMVDIREKAKEQGYVETLFGRRLYLPEIN 854 Query: 489 ---------YPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEG 535 A+ + GTA +++K A A H + +Q+ + + V+E Sbjct: 855 SSNAIRRKGAERVAINAPMQGTAADIIKLAMIAIHNEIKKNDIQMIMQVHDELVFEVKEN 914 Query: 536 G 536 Sbjct: 915 K 915 >gi|26986868|ref|NP_742293.1| DNA polymerase I [Pseudomonas putida KT2440] gi|24981469|gb|AAN65757.1|AE016201_9 DNA polymerase I [Pseudomonas putida KT2440] Length = 915 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 95/572 (16%), Positives = 184/572 (32%), Gaps = 103/572 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ ++ PV+L ++ A+ L L D V N+ ++ + Sbjct: 364 AAYVPLAHDYEGAPVQL----DREAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAI 419 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 T + + + LA + +H T E GK F + ++D Sbjct: 420 EMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDK 479 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 G Y D + T L L L D E L + Sbjct: 480 A----------------GPYAAEDADITLRLHHALQARLAQTPSVQPVLMDIEMPLVPVL 523 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + +L+ +L + L L+ G+ Sbjct: 524 ARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETF-NLGSPKQLGTILYDKLGM 582 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + L + ++ KL + L ++ GR+ Sbjct: 583 PVLSKTAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRI 642 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + Q + TGR S QN+P + +R Sbjct: 643 HTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRIR 677 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 678 QAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVT 737 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 +QR K + L Y AK + ++ + + +A+ Sbjct: 738 TDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAA 797 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++K+A Sbjct: 798 EQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSES 857 Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARR 542 + +LQ+ +L + + R+ Sbjct: 858 GLDARVILQVHDELVLEVREDLVQQVKDEIRQ 889 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + RRL D+ L R +Q + DI+ M Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVKVD 851 Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 ++L VHDE+V E + V + M++ Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQA 894 >gi|157373237|ref|YP_001471837.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315611|gb|ABV34709.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 933 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 102/555 (18%), Positives = 193/555 (34%), Gaps = 92/555 (16%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S L + A +A A+ + D P +L Q+ + L Sbjct: 357 AVDTETTSLNYMEAKLVGLSFAVEAGKAAYLPLAHDYLDAPQQL----NQAEALAKLKPL 412 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFS 119 L + + V N ++ + +GI + + T + + N + S LAL + Sbjct: 413 LENPEIKKVGQNLKYDMSILAN-VGIKLQGIAF-DTMLESYVFNSVASKHNMDDLALKYL 470 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 H E I N + ++ Y D + T L + L P Sbjct: 471 GHKNISFE-----------EIAGKGAKQLTFNQISL-EVAAPYAAEDADITLRLHQHLWP 518 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ E L + + +G ID L+ + E +A+ +L++ ++ Sbjct: 519 RLQKEPELASIFTEIELPLVQVLSDMERQGVLIDSMLLGQQSEELARTIDELEQKAYEIA 578 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 S L++ F G ++ + S + +LA D L ++ + Sbjct: 579 GESFNLS-SPKQLQVLFFEKLGYPIIKKTPKGAPSTAEE-VLVELALDYPLPKIILQHRS 636 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L V++ GR+ + A+ TGR S QN+P + Sbjct: 637 LAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT-------- 687 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+K++ AD + IE R++A ++ + + AF Sbjct: 688 ----------------EEGRRIRHAFIAREGRKVLAADYSQIELRIMAHLSQDKGLLTAF 731 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 A G+DI+ T A+ F+ +V+ EQR K + L Y A+ Sbjct: 732 AEGKDIHKATAAEVFDVDFTEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRGEAQKY 791 Query: 459 LQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDK 497 + + + + + +A + + + A+ Sbjct: 792 IDTYFKRYPGVLNYMEETRAIAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINAP 851 Query: 498 LIGTACELVKKAWRA 512 + GTA +++KKA Sbjct: 852 MQGTAADIIKKAMIN 866 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ + M N T +++ VHDE+V E ++ +C LM + Sbjct: 853 QGTAADIIKKAMINVADWIANETDGEITLIMQVHDELVFEVDSDKAEALQEKVCQLMAEA 912 >gi|254447582|ref|ZP_05061048.1| DNA polymerase I [gamma proteobacterium HTCC5015] gi|198262925|gb|EDY87204.1| DNA polymerase I [gamma proteobacterium HTCC5015] Length = 900 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 98/572 (17%), Positives = 190/572 (33%), Gaps = 99/572 (17%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S + V +A + + P +L ++ A+ + L Sbjct: 324 SFDTETTSLNYMQAEIVGVSFAVEYNKAAYVPLGHDYPGAPEQL----DRDAVLNALKPL 379 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFS 119 L D V + +++ + + GI++ T + + + LA + Sbjct: 380 LEDTGKAKVGQHLKYDKNVLARY-GIELKGIA-HDTMLASYVLNSVAGRHDMDSLAERYL 437 Query: 120 EHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + T + GK F + + + Y D + T +L + Sbjct: 438 DRHTVHYEDIAGKGAKQLTFNQIDL----------------EQAAPYAAEDADITLQLHR 481 Query: 176 RLIPLSDGERDLWLLDQ-----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + Q I G ++D D + + +A+ ++ +E Sbjct: 482 ELWPKLQTEPSLERVYQSLEVPLVDVLARIEQNGVKVDADALYAQSQELAEGMRQAEEAA 541 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + L+ LF G+ +V + S A+ L + Sbjct: 542 HNEAGESF-NLGSPKQLQAILFEKQGLPVVRKTPKGQPSTAEDVLEELAAQGHPLPQWIL 600 Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 A+ KL + L + + GR+ + + TGR S QN+P + Sbjct: 601 RYRALSKLKSTYTDKLPQLIDSKTGRVHTSY-HQAVAATGRLSSSDPNLQNIPIRS---- 655 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A G K++ AD + IE R++A ++G++ Sbjct: 656 --------------------EEGRRIREAFVAEPGHKILAADYSQIELRIMAHLSGDETL 695 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 I+AF G DI+ T ++ F P+D+V EQR K + L Y AK Sbjct: 696 IRAFKEGRDIHQATASEVFGVPLDEVESEQRRRAKAVNFGLIYGMSAFGLAKQLGISRGE 755 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + + + + + +S ++ + A Sbjct: 756 AQGYVDTYFERYPGVRDYMERTREQAREQGYVETEFGRRLYLPEIQSRNVPRRQHAERTA 815 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + GTA +++K+A A H + + D+ Sbjct: 816 INAPMQGTAADIIKRAMIAIHDALEKELPDVR 847 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 6/53 (11%) Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 Q + DI+ M +V+ VHDE+V E P+ L Sbjct: 821 QGTAADIIKRAMIAIHDALEKELPDVRMVMQVHDELVFEVPEDQAKQTQALVE 873 >gi|15602930|ref|NP_246002.1| DNA polymerase I [Pasteurella multocida subsp. multocida str. Pm70] gi|12721401|gb|AAK03149.1| PolA [Pasteurella multocida subsp. multocida str. Pm70] Length = 930 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 103/589 (17%), Positives = 193/589 (32%), Gaps = 82/589 (13%) Query: 2 SKLFIDIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + ID ET S + VGV E + + P ++ + S L Sbjct: 354 KCIAIDTETDSLDYMVAHLVGVSFALENGEAAYLPLRHDYLGAPQQV----DFQTALSLL 409 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 L + + V N ++ +F + GI++ + T +L+ LA Sbjct: 410 KPVLENPEIHKVGQNIKYDLSIFARH-GIEVQGVSY-DTMLLSYVLDSTGRHNMDELAKR 467 Query: 118 FSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + H T + GK F + ++ + + V A EL Sbjct: 468 YLGHQTIHFEDIAGKGKAQLTFNQIPLEQAAEYAAEDADITM--KLQQVLWEKVAAQPEL 525 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 K E L + I G ID D + + I L++ +L Sbjct: 526 VKL---YQTMELPLASVLSRIERHGVLIDSDALFSQSQQIGVRLTALEQQAYELAGQQFN 582 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + T L+ LF + ++ + S + + +LA + L ++ + KL Sbjct: 583 LA-STKQLQEILFDKLSLPVLKKTPKGAPST-NEEVLEELAYEHALPKILVEHRGLSKLK 640 Query: 293 ----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L V+ D GR+ + + TGR S QN+P + Sbjct: 641 STYTDKLPLMVNKDTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR-------------- 685 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R IA G +++ AD + IE R++A ++ + I AF G+D Sbjct: 686 ----------NEEGRRIRQAFIAPEGYQIMAADYSQIELRIMAHLSQDKGLINAFNEGKD 735 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFS 463 I+ +T A+ F P+ +VS EQR K + L Y ++ + + Sbjct: 736 IHRSTAAEIFGIPLAQVSSEQRRSAKAINFGLIYGMSSFGLSRQLGIPRHEAQKYMDLYF 795 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 Q F +S + + A+ + GTA Sbjct: 796 QRYPGVQAFMHDIRETAKAQGYVTTLFDRRLYLPDIQSSNAIRRKAAERVAINAPMQGTA 855 Query: 503 CELVKKAWRAKHQGV-----LQLWKDLTEGFACVVQEGGSISARRVANV 546 +++K+A + + +++ + + V+ R + Sbjct: 856 ADIIKRAMITLDREIAGQPDIKMIMQVHDELVFEVRTDKIEHFRTIIKT 904 >gi|160872753|ref|ZP_02062885.1| DNA polymerase I [Rickettsiella grylli] gi|159121552|gb|EDP46890.1| DNA polymerase I [Rickettsiella grylli] Length = 898 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 106/598 (17%), Positives = 198/598 (33%), Gaps = 106/598 (17%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S L + E+ V A+ + D P +L + + L Sbjct: 323 SFDTETTSLNVMQAELVGLSFAIGGEKPVYIPLAHDYPDAPQQL----NRQWVLQQLKPL 378 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFS 119 D + + H+ ++ + GI + + T + + + AL Sbjct: 379 FEDPKQIKIGHHLKYDMNILAHY-GIQLRGIDF-DTMLESYLLDSASNQHSLDSAALKHL 436 Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +H T E GK + F + ++ Q G Y D L + Sbjct: 437 DHKTIRFEEIAGKGAKQKTFNQINL----------------QDAGPYAAEDAAIALRLHE 480 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P ++ E L + + G ID L+ K IA+ L++ Sbjct: 481 TLKPQLDNVVGLSTVYTEIEMPLVTVLARMERHGVLIDAPLLKKQSRSIAKRLLTLEQQA 540 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + L+ LF G+ +++ + ++ S + + LA L ++ Sbjct: 541 FQLAGKPF-NLGSPKQLQTILFDDHGLPILEKTPKG-QASTSENVLQALALTFPLPKIIL 598 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L E ++ GR+ + A TGR S QN+P + Sbjct: 599 KHRRLSKLKSTYTDKLPEQINPKTGRVHTSY-HQAAVVTGRLSSSDPNLQNIPART---- 653 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G ++ AD + IE R++A + + Sbjct: 654 --------------------HEGRKIRQAFIAPPGYFILAADYSQIELRIIAHFSQDKGL 693 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +KAFA G DI+ T A+ N P+++V+ EQR K + L Y A+ Sbjct: 694 LKAFAQGLDIHQATAAEVLNIPLERVTHEQRRSAKAINFGLMYGMSAFGLARQLGISRED 753 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFA 493 ++++ + + + +H A Sbjct: 754 AKNYIERYFDRYPGVKRYMERIRQRAHEQRYVTTLFGRRLNLAFINSNDSLQRRASERAA 813 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKD------LTEGFACVVQEGGSISARRVAN 545 + L G+A +++KKA +++ D + + + E A+R+ Sbjct: 814 INAPLQGSAADIIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRAKRLIE 871 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 40/128 (31%), Gaps = 9/128 (7%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + +E R + V R +R + + +++N+ S R Sbjct: 749 ISREDAKNYIERYFDRYPGVKRYMERIRQRAHEQRYVTTLFGRRLNLAFINSNDSLQRRA 808 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ + M +++ VHDE+V E + Sbjct: 809 SERAA--INAPLQGSAADIIKKAMIRIDAELIKKKLDAHMIMQVHDELVFEIAEHDLQRA 866 Query: 645 GTLCS-LM 651 L LM Sbjct: 867 KRLIENLM 874 >gi|238898050|ref|YP_002923731.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465809|gb|ACQ67583.1| multifunctional DNA polymerase I: 5'->3' exonuclease (N-terminal); 3'->5' polymerase; 3'->5' exonuclease (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 963 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 99/588 (16%), Positives = 189/588 (32%), Gaps = 103/588 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + + P +L + + + L D + V N F++ L GI Sbjct: 408 AAYLPLGHDYPEAPAQL----NRDKVLALFKPLLEDPQALKVGQNLKFDQSLLANY-GIK 462 Query: 88 IPSKRWICTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 + + T + + N + L+ H T E GK F + + Sbjct: 463 LQGIAF-DTMLESYVFNSVAGRHDMDSLSERHLNHKTLSFEDIAGKGKNQLTFNQIPL-- 519 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + Y D + T L L P L + E L + Sbjct: 520 --------------EQAAIYAAEDADVTLRLHLALWPKLKENPDLMKVLQEIEMPLLSVL 565 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ID D++L + + +L++ + + T L+ L+ + Sbjct: 566 SRMERTGVMIDPDILLNHSKELQLRLTELEKKAHDIAGETF-NLNSTQQLQTILYEKQTL 624 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + + + +LA D L ++ ++ KL + L + GR+ Sbjct: 625 PVLKKTPKGAPST-NEAVLAELALDYPLPKIILEHRSLTKLKTTYTDKLPLMIHPLSGRV 683 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P +R Sbjct: 684 HTSY-HQAVTSTGRLSSRDPNLQNIP------------------------VRNEEGRRIR 718 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G ++V AD + IE R++A ++ + + AF+ G+DI++ T A+ F P+ +VS Sbjct: 719 HAFIAPRGYQIVAADYSQIELRIMAHLSQDQGLLNAFSEGQDIHLITAAEVFGLPVSQVS 778 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES- 480 +QR K + L Y A+ + + + + + E+ Sbjct: 779 AQQRRSAKAINFGLIYGMSAFGLARQLNVSRFEAERYMNLYFTHYPKVLDYMQRTREEAV 838 Query: 481 --------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + A+ + GTA +++K+A Sbjct: 839 KNGYVTTLEGRRLYLADIHSKNANRRKAAEREAINAPMQGTAADIIKRAMIHID-----F 893 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 W E Q+ +V + LV H + R L Sbjct: 894 WLQQEEQKLAPKQKSRVNLIMQVHD--ELVFEVHDSVLKSATDKIREL 939 >gi|194290334|ref|YP_002006241.1| DNA polymerase I [Cupriavidus taiwanensis LMG 19424] gi|193224169|emb|CAQ70178.1| DNA polymerase A; 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus taiwanensis LMG 19424] Length = 939 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 108/577 (18%), Positives = 190/577 (32%), Gaps = 98/577 (16%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVK-LWDRTE--QSAMPSDLLQ 59 ID ET S P+ VG+ A A V L + + + + + Sbjct: 360 AIDTETTSLDPMQAQLVGISLSAAPGEACYIPVAHRGPDVAGLPEHGQLSREFVLERMRA 419 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 +L D + + N ++ +F GI + T + + + LA Sbjct: 420 WLEDASRPKLGQNLKYDIHVFANH-GIKLRGVA-HDTMLQSYVLASHRNHGMDSLAERLL 477 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 T E C +D EY D + T L +R+ P Sbjct: 478 SLKTITYE------EVCGKGASQIGFDQID------LARATEYAAEDADVTLRLHRRMFP 525 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + E + ++ Q + G ID + + + Q L++ + Sbjct: 526 QVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRMLALEQSAYEAA 585 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF + +V + S + +LA+D L +L Sbjct: 586 GQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRG 643 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L + V+ GR+ + A TGR + QN+P + Sbjct: 644 LSKLKSTYTDKLPKMVNPRTGRVHTSYGQATAV-TGRLASTEPNLQNIPVRT-------- 694 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G +V AD + IE R++A I+G++ ++AF Sbjct: 695 ----------------DEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAF 738 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 ANGEDI+ T A+ F D VS EQR KV+ L Y A Sbjct: 739 ANGEDIHRATAAEIFGVERDAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIERDAARHY 798 Query: 459 LQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDK 497 + ++ + + + E LW+ + A+ Sbjct: 799 IDRYFMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAP 858 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA +L+K + A + + ++Q+ +L Sbjct: 859 MQGTAADLIKLSMIAVQDWLERDGLQTRQIMQVHDEL 895 >gi|170724262|ref|YP_001751950.1| DNA polymerase I [Pseudomonas putida W619] gi|169762265|gb|ACA75581.1| DNA polymerase I [Pseudomonas putida W619] Length = 915 Score = 283 bits (723), Expect = 8e-74, Method: Composition-based stats. Identities = 105/599 (17%), Positives = 200/599 (33%), Gaps = 111/599 (18%) Query: 7 DIETRSPQPLPK---VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 D ET S K VG+ E +A A+ ++ PV+L ++ A+ L L Sbjct: 339 DTETTS-LDAQKAQLVGLSFAVEPHEAAYVPLAHDYEGAPVQL----DREAVLLALKPLL 393 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSE 120 +D V N+ ++ + T + + + LA + + Sbjct: 394 QDPAKEKVGQNAKYDINILANGSPAIQMQGVAYDTMLESYVLNSTATRHDMDSLAQKYLD 453 Query: 121 HLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 H T E GK F + +D G Y D + T L + Sbjct: 454 HATIAFEDIAGKGAKQLTFNQIHLDKA----------------GPYAAEDADITLRLHQA 497 Query: 177 L----------IPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L +P+ D E L + I +G +D L+ + + L+ Sbjct: 498 LQARLAQTPSVLPVLMDIEMPLVPVLAKIERQGALVDAALLQIQSGELGVKMADLERRAY 557 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLAS 284 +L + L L+ G+ ++ + S + + + +LA+ L + Sbjct: 558 ELAGEEF-NLGSPKQLGSILYDKLGMPVLSKTAKGQPST-AEAVLDELAEQGYPLPEVLM 615 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L ++ GR+ + Q + TGR S QN+P + Sbjct: 616 QYRSLSKLKSTYTDKLPGQINPRTGRIHTSYQ-QAVAATGRLSSSDPNLQNIPIRT---- 670 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IAS G KL+ AD + IE R++A +A ++ Sbjct: 671 --------------------AEGRRIRQAFIASPGYKLLAADYSQIELRIMAHLAKDEGL 710 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF N D++ T A+ F ++ V+ +QR K + L Y AK Sbjct: 711 LHAFRNNLDVHRATAAEVFGVALEAVTTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQ 770 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFA 493 + ++ + + +A+ + + ++ A Sbjct: 771 SQDYIDRYFARYPGVLAYMERTRAQAAEQGFVETLFGRRLYLPDINAKNPALRKGAERTA 830 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARR 542 + + GTA +++K+A + +LQ+ +L + + R Sbjct: 831 INAPMQGTAADIIKRAMVNVDNWLSESGLDARVILQVHDELVLEVREDLVDQVKDEIRG 889 Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + RRL D+ L R +Q + DI+ M N Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVNVD 851 Query: 619 K----NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 +G D ++L VHDE+V E + V + M+K Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVDQVKDEIRGQMSKA 894 >gi|56459137|ref|YP_154418.1| DNA polymerase I [Idiomarina loihiensis L2TR] gi|56178147|gb|AAV80869.1| DNA polymerase I [Idiomarina loihiensis L2TR] Length = 921 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 109/593 (18%), Positives = 203/593 (34%), Gaps = 111/593 (18%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V + +AV + + + P ++ + + L L Sbjct: 345 DTETTSLNYMEAELVGVSLAMAPGEAVYIPVGHDYMEAPDQVG----RDWLLEQLKPLLE 400 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSE 120 E V N ++ + ++ I + ++LA N + S L+L++ Sbjct: 401 AEKPQKVGQNLKYDSHILRRY---KIRLAGILNDTMLASYVFNSVGSRHDMDTLSLHYLN 457 Query: 121 HLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 H T + GK F + ++ + G Y D + T L Sbjct: 458 HKTISFEDIAGKGAKQLTFNQIAL----------------EQAGPYAAEDADITYRLHDV 501 Query: 177 LIP------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L L+D E L + + G RID +L+ K + IA++ L++ Sbjct: 502 LWNKVKETGSELQSVLTDIEVPLVPILCDMEQYGVRIDANLLGKQSQEIAEKLDALEKKA 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ + L+ F + +V + S + +LA D L + Sbjct: 562 FEIAGEEF-NLGSPKQLQRIFFEKLELPIVKKTPKGAPSTAEE-VLHELAHDYPLPDVIL 619 Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + ++ D GR+ + Q + TGR S QN+P + Sbjct: 620 QHRGLSKLKSTYTDKLPKMINPDTGRVHTSYQ-QAVTATGRLSSTDPNLQNIPIRT---- 674 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR I G K+V D + IE R++A ++ ++ Sbjct: 675 --------------------AEGRRVRQAFIPEQGYKIVAIDYSQIELRIMAHLSQDESL 714 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +KAFA G DI+ T A+ F D+VS +QR K + L Y A+ Sbjct: 715 LKAFAEGLDIHRATAAEVFGCKADEVSNDQRRQAKAVNFGLIYGMSAFGLARQLGIARHE 774 Query: 455 CGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFA 493 + ++ + ED + +++ + A Sbjct: 775 AQHYMDKYFERFPGVLRYMEDTRKQAKEQGYVKTLFGRRLPLPDIKASNGARRKGAERAA 834 Query: 494 VKDKLIGTACELVKKA------WRAKH--QGVLQLWKDLTEGFACVVQEGGSI 538 + + GTA +++KKA W + Q +++ + + ++E Sbjct: 835 INAPMQGTAADIIKKAMLKVADWIDSNNCQDDVRMLMQVHDELVFEIKESKLT 887 >gi|238921711|ref|YP_002935226.1| DNA polymerase I [Edwardsiella ictaluri 93-146] gi|238871280|gb|ACR70991.1| DNA polymerase I [Edwardsiella ictaluri 93-146] Length = 930 Score = 283 bits (723), Expect = 9e-74, Method: Composition-based stats. Identities = 101/581 (17%), Positives = 198/581 (34%), Gaps = 97/581 (16%) Query: 7 DIETRSPQPLPKVGVWAYAEQ----AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V A A+ + D P +L ++ + + L L Sbjct: 356 DTETDSLDVLSANLVGISCADKPGQACYIPLAHDYLDAPHQL----DRQYVLARLQPLLE 411 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 DE + + N ++ + + GI + + T + + + L+ +H Sbjct: 412 DEGIAKIGQNLKYDIGVMARY-GITLRGVAF-DTMLESYVLNSVAGRHDMDSLSARHLDH 469 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 T E A + + + + P + EY D + T +L + L P+ Sbjct: 470 KTITFEEIAGKGK-GQLTFNQIP-----------LEQASEYAAEDADVTLQLHQHLWPML 517 Query: 182 DGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +GE L + + G ID ++ + + +A + L++ Sbjct: 518 EGESGPSHIFRDIDMPLVPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQQAHSEAGE 577 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 S T L+ LF + ++ + G S + + L ++ + Sbjct: 578 PFNLS-STKQLQSILFEKQQLPVLKKTPGGAPSTNEEVLVELAEQGYALPQVILEYRTLA 636 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L V+ GR+ + + TGR S QN+P + Sbjct: 637 KLKSTYTDKLPLMVNPLTGRVHTSY-HQAVTATGRLSSSDPNLQNIPVRS---------- 685 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G ++V AD + IE R++A ++G+ ++AFA Sbjct: 686 --------------DEGRRIRQAFIAPVGSRIVAADYSQIELRIMAHLSGDKGLLQAFAA 731 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G+DI+ T A+ F P++ VS +QR K + L Y A+ + Sbjct: 732 GKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRYMD 791 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 + + + + + + + + A+ + Sbjct: 792 LYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAPMQ 851 Query: 500 GTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 GTA +++K+A W + Q +++ + + V E Sbjct: 852 GTAADIIKRAMIAVDGWLQETQLEVRMIMQVHDELVFEVPE 892 Score = 41.3 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 6/48 (12%) Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644 Q + DI+ M + +++ VHDE+V E P++ +V Sbjct: 851 QGTAADIIKRAMIAVDGWLQETQLEVRMIMQVHDELVFEVPESQVEAV 898 >gi|104779389|ref|YP_605887.1| DNA polymerase I [Pseudomonas entomophila L48] gi|95108376|emb|CAK13070.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Pseudomonas entomophila L48] Length = 922 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 94/573 (16%), Positives = 189/573 (32%), Gaps = 105/573 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ ++ P +L ++ A+ L L D + N+ ++ + Sbjct: 371 AAYVPLAHDYEGAPAQL----DREAVLLALKPLLEDPAKGKIGQNAKYDINILANGSPAI 426 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSIDS 142 + T + + + LA + +H T + GK F + ++ Sbjct: 427 LMRGVAYDTMLESYVLDSTATRHDMDSLAQKYLDHTTIGFEDIAGKGAKQLTFNQIPLEK 486 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL----------IPLS-DGERDLWLLD 191 G Y D + T L L +P+ D E L + Sbjct: 487 A----------------GPYAAEDADVTLRLHHALQARLANTPSVLPVLMDIEMPLVPVL 530 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D L+ + + +L+ + L + L L+ G+ Sbjct: 531 AKIERQGALVDAALLGVQSGELGAKLVELEREAYALAGEEF-NLGSPKQLGAILYDKLGM 589 Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 ++ + S + + + LA+ L ++ ++ KL + L ++ GR Sbjct: 590 PVLSKTAKGQPST-AEAVLDDLAEQGYPLPKVLMQYRSLSKLKSTYTDKLPGQINPRTGR 648 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + Q + TGR S QN+P + + Sbjct: 649 IHTSYQ-QAVAATGRLSSSDPNLQNIPVRT------------------------AEGRRI 683 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +AS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F + V Sbjct: 684 RQAFVASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALADV 743 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479 + +QR K + L Y AK + ++ + + +A+ Sbjct: 744 TTDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQA 803 Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++K+A A Sbjct: 804 AEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVAVDNWLTD 863 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARR 542 + +LQ+ +L + E R Sbjct: 864 SKLDARVILQVHDELVLEVREDLVEQVKDEIRG 896 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 16/101 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + RRL D+ L R +Q + DI+ M Sbjct: 808 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVAVD 858 Query: 619 ------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 K ++L VHDE+V E + V + M+ Sbjct: 859 NWLTDSKLDARVILQVHDELVLEVREDLVEQVKDEIRGYMS 899 >gi|317494612|ref|ZP_07953025.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917542|gb|EFV38888.1| DNA polymerase I [Enterobacteriaceae bacterium 9_2_54FAA] Length = 933 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 101/607 (16%), Positives = 200/607 (32%), Gaps = 112/607 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVW-AYAEQAVI---TLCAYAWDDEPVKLWDRTEQSAMPSDL 57 D ET S L V ++A + + + D P +L ++ + + L Sbjct: 353 KIFAFDTETDSLDVLTTNLVGLSFATAPSVAAYIPVGHDYLDAPDQL----DRDDVLAKL 408 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLAL 116 L D ++ V N +++ + + GI++ + T + + + LA Sbjct: 409 KPVLEDANLLKVGQNLKYDQGVMARY-GIELQGIAF-DTMLESYDLDSVAGRHDMDSLAE 466 Query: 117 NFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 H T E GK+ + F + ++ + Y D + T Sbjct: 467 RHLNHKTITFEEIAGKGKSQLT-FNQIAL----------------EQATPYAAEDADVTL 509 Query: 172 ELFKRLIPLSDGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L +L P + E L + + G ID +++ K + +A +L Sbjct: 510 QLHLKLWPQLEKEAGLKKVFTDIDMPLVPVLSRMERTGVLIDSNILGKHSQELAIRLDEL 569 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + S L+ LF + +V + G S + L Sbjct: 570 EKKAHEAAGEPFNLS-SPKQLQAILFEKQKLPVVKKTPGGAPSTNEEVLAELSEQGFELP 628 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 629 TIILEHRGLAKLKSTYTDKLPQMINPATGRVHTSY-HQAVTATGRLSSSDPNLQNIP--- 684 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G K+V AD + IE R++A ++G Sbjct: 685 ---------------------VRNDEGRRIRQAFIAPQGYKIVAADYSQIELRIMAHLSG 723 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AFA G+DI+ T A+ F ++ V+ EQR K + L Y A+ Sbjct: 724 DKGLLTAFAAGKDIHRATAAEVFGLKLEDVTSEQRRSAKAINFGLIYGMSAFGLARQLNI 783 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQY 489 + + + + + + ++ + + Sbjct: 784 ARGEAQRYMDLYFERYPGVLEYMERTRQQAAEQGYVETLDGRRLYLPEIHSRNGMRRKGA 843 Query: 490 PEFAVKDKLIGTACELVKKAWRAKH-----------QGVLQLWKDLTEGFACVVQEGGSI 538 A+ + GTA +++K+A + + ++Q+ +L V E Sbjct: 844 ERAAINAPMQGTAADIIKRAMISVDAWLLQQKEPLVRMIMQVHDELVFEVHESVIEQTVE 903 Query: 539 SARRVAN 545 R + Sbjct: 904 KVRELME 910 >gi|219870449|ref|YP_002474824.1| DNA polymerase I [Haemophilus parasuis SH0165] gi|219690653|gb|ACL31876.1| DNA polymerase I [Haemophilus parasuis SH0165] Length = 954 Score = 282 bits (722), Expect = 1e-73, Method: Composition-based stats. Identities = 104/579 (17%), Positives = 196/579 (33%), Gaps = 108/579 (18%) Query: 12 SPQPLPKVGVWAYAEQAVITLCAYA---WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 PL G A+ + L + D+ L ++ ++ + L L + + Sbjct: 386 CYIPLAHKG--KIAQPTQVDLFGESEAELDEVEALLPNQLNKADCLAQLKPILENPNIRK 443 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----- 123 + N ++ +F + GI++ + T + + T LA + H T Sbjct: 444 IGQNIKYDLTIFARY-GIELQGVAF-DTMLQSYTLDSTGRHNMDNLAERYLGHQTIPFEE 501 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179 +GK + F + +D EY D E T +L + L Sbjct: 502 LAGKGKHQLT-FDQIELDKA----------------TEYAGEDAEITMKLHQLLWSELQK 544 Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 E L + + G ID +L I Q K+L+ + + + Sbjct: 545 TPELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKELETLVHQEAGEVF 604 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILK 291 + T L+ LF G+ ++ + S + + +LA+ + L + K Sbjct: 605 NLA-STKQLQEILFNKLGLPILKKTPKGAPST-NEEVLEELAQMGHQVPVLLMEHRGLSK 662 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + +++ GR+ + + TGR S QN+P + Sbjct: 663 LKSTYTDKLPQMINAQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------------ 709 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA +G ++ AD + IE R++A +A + IKAFA G Sbjct: 710 ------------NEQGRRIRQAFIARDGYVILAADYSQIELRIMAHLANDANMIKAFAEG 757 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 +DI+ +T A+ F P++ V+ EQR K + L Y A + ++ Sbjct: 758 KDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEFGLANQLGISRTDAKKYMEL 817 Query: 462 FSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIG 500 + Q + F + S + + A+ + G Sbjct: 818 YFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPEINSSNQMRRKAAERVAINAPMQG 877 Query: 501 TACELVKKAWRAKHQG---------VLQLWKDLTEGFAC 530 TA +++K A Q ++Q+ +L Sbjct: 878 TAADIIKVAMIGIDQAVRNCEDIAMIMQVHDELVFEVKA 916 >gi|218780589|ref|YP_002431907.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] gi|218761973|gb|ACL04439.1| DNA polymerase I [Desulfatibacillum alkenivorans AK-01] Length = 889 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 95/554 (17%), Positives = 175/554 (31%), Gaps = 90/554 (16%) Query: 5 FIDIETRSPQPLPKVGV---WAY-AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET P+ V ++Y A++A + + P ++ L Sbjct: 314 ALDTETTGLDPMQASLVGMSFSYEADRAFYAPLTHDYLGAPDQVG----VEKALEILGPV 369 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFS 119 L + + + N ++ I+ + G D+ + T V + S +A+ Sbjct: 370 LSNPEIKKIGQNIKYDWIVLARH-GADLQGVAF-DTMVASYLLNPSHRSHGLDQIAMELL 427 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 EH E + N V + Y D + T +++ L P Sbjct: 428 EHRMISYE-----------EVCGKGAKAITFNQVPL-EKAVPYACEDADVTFQIYGLLQP 475 Query: 180 LSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + + G +D D + L + + +++I +L Sbjct: 476 KLEKNQLLELFKTVEMPLVRVLVKMEMEGITVDSDQLQALSKEFQGGMESAEKEIYQLAG 535 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ + ++ +T LA L L ++ Sbjct: 536 EEFNIA-SPQQLGHILFEKLGLPVQKKTKKKTGYSTDVKVLTTLASQHELPALILRYRSV 594 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + GR+ + + TGR S QN+P + Sbjct: 595 AKLKSTYVDALQSLIHPETGRVHTSFN-QNVTATGRLSSSNPNLQNIPIRT--------- 644 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I G ++ AD + IE R+LA ++ +++ I+ F Sbjct: 645 ---------------PEGKRIREAFIPRKGWEMFCADYSQIELRILAHLSQDEFLIELFK 689 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDL 459 +GEDI+ T ++ F + V+ E R K + + Y GA + Sbjct: 690 SGEDIHKRTASEVFELFPEFVTDEMRRQAKAINFGIIYGMGAFRLSNEIGVSRKTAQRYI 749 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498 + K F + A +H M A + Sbjct: 750 DNYFVTYKGVKKFIEETIALAHETGMTKTLLGRTRPLPDINAKNRVLMEAAERIATNTPI 809 Query: 499 IGTACELVKKAWRA 512 GTA +L+K A Sbjct: 810 QGTAADLIKVAMIK 823 >gi|12002010|gb|AAG43148.1|AF063186_1 DNA polymerase I [Rhodococcus erythropolis] Length = 920 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 92/589 (15%), Positives = 199/589 (33%), Gaps = 102/589 (17%) Query: 2 SKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + D ET S + V A+ A A+ ++ P +L + + + + Sbjct: 346 KRFAFDTETTSLDYRIAQIVGFSVAFDAQDAYYVPLAHDYEGAPEQL----NREVILAQI 401 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLA 115 L DE+V + H+ ++ + + GI + W ++LA + +A Sbjct: 402 KPILEDESVKKIGHHLKYDAHVLENH-GIHL--AGWYFDTMLASYVLYSVATRHGMDDVA 458 Query: 116 LNFSEHLTKMEEG----KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + HLT E A F + +++ + Y D T Sbjct: 459 RLYLSHLTTTYEQVAGRGAKQKTFNQIPLETAAH----------------YAAEDAHVTY 502 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L++ L L + E + + + + G +DL + +L + + L Sbjct: 503 RLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNL 562 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + I+++ + + LF G+ + T + S S + ++ + Sbjct: 563 ENQIMEIAGESF-NVSSPKQVGEVLFEKLGLKGGKKT-TTGQYSTSESVLEKIEHPIAQL 620 Query: 281 RLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L G + LK + L + + D T + TGR S QN+P + Sbjct: 621 ILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIR---- 676 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A G+ L+ AD + IE R++A ++ ++ Sbjct: 677 --------------------AEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEA 716 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AF +G+D++ T A+ P+++V+ +QR K + L Y + Sbjct: 717 LLDAFIHGQDVHRRTAAEVLGIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQ 776 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++Q+ + ++ ++ ++ Sbjct: 777 ESQDYIKQYFHRYPGIYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERA 836 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 A+ L G+A +++K A + + ++ + + V E + Sbjct: 837 AINAPLQGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVFEVDEDIA 885 >gi|300113291|ref|YP_003759866.1| DNA polymerase I [Nitrosococcus watsonii C-113] gi|299539228|gb|ADJ27545.1| DNA polymerase I [Nitrosococcus watsonii C-113] Length = 901 Score = 282 bits (721), Expect = 1e-73, Method: Composition-based stats. Identities = 107/581 (18%), Positives = 200/581 (34%), Gaps = 98/581 (16%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSD----- 56 D+ET S Y E A I ++A D T +P + Sbjct: 328 DLETNSLD---------YME-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLAR 377 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115 L L D V N F+R + GI++ + + + + LA Sbjct: 378 LKPLLEDPRHGKVGQNLKFDRNVLANY-GIELQGIH-HDSMLESYVLDSTATRHNMDSLA 435 Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEAT 170 L + + T +M GK F + +I+ PY A+ + + E+ Sbjct: 436 LKYLQRTTITYEMVAGKGSKQLPFNQVTIEKAAPYAAEDADISLQLHRYFWPRIQQEESL 495 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 R L++ L E L + + G ++D + + +A KKL+++ L Sbjct: 496 RRLYQEL------EIPLIPVLSRMERNGVQVDTTQLKTQSDELAARLKKLEQEAFDLAGE 549 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + ++ L+ + + + T + + + + +LA D L + + Sbjct: 550 SFNLA-SPKQIQAILYEKLKLPVTRKTP-TGQPSTAETVLQELALDYPLPQRLLQYRTLS 607 Query: 291 KLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L V+ GR+ + + TGR S QN+P + Sbjct: 608 KLKSTYTDRLPLQVNPHTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRT---------- 656 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G +LV AD + IE R++A ++ ++ + AF Sbjct: 657 --------------AEGRRIRQTFIAPPGYRLVAADYSQIELRIMAHLSEDEGLLAAFEA 702 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQ 460 EDI+ T + F TP+++V+ EQR K + L Y A + ++ Sbjct: 703 EEDIHQRTATEVFRTPLEEVTPEQRRSAKAINFGLIYGMSAHGLGRQLGINRTAAQHYIE 762 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 ++ Q + D S ++Q A+ + Sbjct: 763 RYFQRYPGVKAYMDNICQQARQKGYVETLFGRRLYLPDIHSRQTQRRNQAERTAINAPMQ 822 Query: 500 GTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 G+A +++K+A W K+ ++ + + V E Sbjct: 823 GSAADIIKRAMIHTDGWLQKNSDNARMIMQVHDELVFEVAE 863 >gi|284009008|emb|CBA75937.1| DNA polymerase I [Arsenophonus nasoniae] Length = 936 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 98/600 (16%), Positives = 191/600 (31%), Gaps = 112/600 (18%) Query: 7 DIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S L + G AY + + D P +L + Sbjct: 361 DTETDSLDTLSAHLIGLSFAIEKGKGAY------LPLGHNYLDAPQQLP--------LDE 406 Query: 57 LLQY----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 +L L D+ + + N F+ + I++ + + T + + + L Sbjct: 407 VLAAIKPILVDKNIQKIGQNLKFDYGVMANY-DIELKNMAF-DTMLESYVLNSVAGLGRH 464 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + HL IA K + + + Y D + T Sbjct: 465 DMDSLAQRHLNHKTITFEEIAGKGKNQLTF---------NQIPLEQASTYAAEDADVTLL 515 Query: 173 LFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L P + E L + + G ID + + K IA +++ Sbjct: 516 LHQTLWPQLESEPKLKGIFQQIEMPLVPVLARMERVGVLIDANKLAKQSREIASRLMEIE 575 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ + + + L+ LF + +V + S + + +LA L + Sbjct: 576 KEAYAIAEQEFNLA-SPKQLQAILFEKLQLPVVKKTPSGAPST-NEEVLEELAFSHELPK 633 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + ++ KL + L + + T + TGR S QN+P + Sbjct: 634 IILQHRSLSKLKSTYTDKLPMMIHPKTKRVHTSYHQAVTATGRLSSRDPNLQNIPVRT-- 691 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G K+V AD + IE R++A ++ + Sbjct: 692 ----------------------EEGRRIRQAFIAREGYKIVAADYSQIELRIMAHLSQDK 729 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452 + AFA G+DI+ T A+ F + V+ EQR K + L Y A + Sbjct: 730 GLLDAFAEGQDIHRATAAEVFGVLLTDVTNEQRRSAKAINFGLIYGMSAFGLSRQLGITR 789 Query: 453 SHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPE 491 + ++ + ++ + S + + Sbjct: 790 GQAQHYMDRYFERYPGVLSYMERTRKQAAEQGYVETLAGRRLYLPDINSRNAMRRKASER 849 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARRVAN 545 A+ + GTA +++KKA A + + L + + + V+E +++ Sbjct: 850 EAINAPMQGTAADIIKKAMIALDKWIESVKPDLYMLMQVHDELVFEVKESAVDRSQQKIR 909 >gi|260460455|ref|ZP_05808706.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] gi|259033560|gb|EEW34820.1| DNA polymerase I [Mesorhizobium opportunistum WSM2075] Length = 997 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 106/581 (18%), Positives = 191/581 (32%), Gaps = 110/581 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDL---------LQYLRDETVMCVAHNSLFERI 78 A A+ + D + + + L D++V+ +A N ++ + Sbjct: 437 AAYIPFAHKSGNG-----DLLGGGTLENQIPLREALAVLKPLLEDKSVLKIAQNLKYDLV 491 Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---LNFSEHLTKMEEGKALIARF 135 + + GID+ G P LA L + K G Sbjct: 492 IMSRY-GIDVAPFDDTMLISYVLDAGTPHGHGMDALADKWLGHTPLQLKDVIGS------ 544 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGER 185 K S+ D +A + D + T L+ L P ER Sbjct: 545 GKNSVGFDQVDIDKATA---------HAAEDADVTLRLWLVLKPRLAATGLVSVYERLER 595 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + RG +D ++ +L +AQ +L+E+I +L I + L L Sbjct: 596 PLVSVLARMEQRGISVDRQILSRLSGELAQGAARLEEEIYQLVGERI-NIGSPKQLGDIL 654 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAV 299 F G+ ++ T + S + LA + L R + KL + L + Sbjct: 655 FGRMGLPGGSKTK-TGQWSTSAQLLEDLAAEGHELPRKIVDWRQLTKLKSTYTDALPGFI 713 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 + + T A+ TGR S QN+P + Sbjct: 714 HPETKRVHTSYALAATTTGRLSSSDPNLQNIPVRT------------------------A 749 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R+ IA G +LV AD + IE RVLA +A +AFA+G DI+ T ++ FN Sbjct: 750 EGRKIRTAFIADKGNRLVSADYSQIELRVLAHVAEIPQLRQAFADGADIHAITASEMFNV 809 Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474 P++ + E R K + + Y G A ++++ + + + Sbjct: 810 PVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPREEASNYIKKYFERFPGIRDYIEE 869 Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + S + ++ ++ +L GTA +++++A Sbjct: 870 TKAYAREHGFVETIFGRRIHYPDIRSSNPSIRAFNERASINARLQGTAADIIRRAMVRMD 929 Query: 515 QG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 + +LQ+ +L E R V Sbjct: 930 EALEKAKLSARMLLQVHDELIFETVDAEVEATIPIVRHVME 970 >gi|294634243|ref|ZP_06712786.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] gi|291092330|gb|EFE24891.1| DNA polymerase I [Edwardsiella tarda ATCC 23685] Length = 930 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 107/596 (17%), Positives = 202/596 (33%), Gaps = 101/596 (16%) Query: 7 DIETRSPQPLPKVGVWAYAEQA----VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V A A+ + D P +L ++ + + L L Sbjct: 356 DTETDSLDVLSANLVGISCADAPGQAYYIPLAHDYLDAPAQL----DREWVLARLQPLLE 411 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 DE V V N ++ + + GI + + T + + + LA +H Sbjct: 412 DEKVAKVGQNLKYDIGVMARH-GIILRGVAF-DTMLESYVLNSVAGRHDMDSLAARHLDH 469 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 T E A + + + + P + EY D + T L +RL P+ Sbjct: 470 KTITFEEVAGKGK-GQLTFNQIP-----------LEQAAEYAAEDADVTLRLHQRLWPML 517 Query: 182 DGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + E L + + G ID ++ + + +A L++ L D Sbjct: 518 ESEAGPRHVFCDIDMPLVPVLSRMERTGVLIDSTILGQHSQELAVRLNALEQQAHTLADE 577 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 S T L+ LF + ++ + G S + + L ++ + Sbjct: 578 PFNLS-STKQLQSILFDKQQLPILKKTPGGAPSTNEEVLVELAEQGYELPQVILDYRTLA 636 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + VS GR+ + + TGR S QN+P + Sbjct: 637 KLKSTYTDKLPQMVSPLTGRVHTSY-HQAVTATGRLSSSDPNLQNIPVRS---------- 685 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G K+V AD + IE R++A ++G+ ++AFA Sbjct: 686 --------------DEGRRIRQAFIAPAGSKIVAADYSQIELRIMAHLSGDRGLLEAFAA 731 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G+DI+ T A+ F P++ V+ +QR K + L Y A+ + + Sbjct: 732 GKDIHRATAAEVFGLPLEAVTADQRRSAKAINFGLIYGMSAFGLARQLNIGRNEAQRYMD 791 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 + + + + + + + + A+ + Sbjct: 792 LYFERYPGVLAYMERTRQQASEQGYVETLDGRRLYLPEINARNAMRRKAAERAAINAPMQ 851 Query: 500 GTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 GTA +++K+A A + ++Q+ +L + + R + Sbjct: 852 GTAADIIKRAMIAVDAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLME 907 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 Q + DI+ M +++ VHDE+V E P+ V + +LM Sbjct: 851 QGTAADIIKRAMIAVDAWLQQSQPQVRMIMQVHDELVFEVPEALVDEVVSHVRTLM 906 >gi|301629258|ref|XP_002943761.1| PREDICTED: DNA polymerase I-like [Xenopus (Silurana) tropicalis] Length = 931 Score = 282 bits (720), Expect = 2e-73, Method: Composition-based stats. Identities = 102/583 (17%), Positives = 194/583 (33%), Gaps = 116/583 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 +D ET S A +A I +++ + + Sbjct: 358 ALDTET-SALD---------AMRAQIVGLSFSVQPGEAAYIPLRHEGPDAPVQLPLEQVL 407 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L +L D + + ++R +F GI++ T + + + A L Sbjct: 408 ARLKPWLEDARHAKLGQHIKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHNLASL 465 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A G+ + C + P+ + + D + T E Sbjct: 466 AER--------HTGRTGLNYEDLCGKGVHQIPFAQVSVDKAATY------ACEDSDQTLE 511 Query: 173 LFKRLIPL---SDGERDLWLLDQT-------INDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + L PL ++ R ++ L+ + G ID L+ + + Q +L+ Sbjct: 512 VHQTLWPLLQANERLRAIYELEMHSSEALFRMERNGVLIDAALLAQQSHALGQRILRLET 571 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + ++ + L F G+ +V + T + + +LA D L Sbjct: 572 EAYEIAGQPF-NLNSPKQLGEIFFDKLGMPVVRKT-TTGARSTNEEVLEKLAADYPLPAR 629 Query: 283 ASSGSAILKLN-TLSE-----AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ KL T ++ A+ GR+ + TGR S QN+P + Sbjct: 630 LLEHRSLSKLKSTYTDKLGLLALPRTGRVHTHYA-QAVAVTGRLSSSDPNLQNIPVRT-- 686 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R +A G+ + AD + IE R++A I+G+ Sbjct: 687 ----------------------PEGRRIREAFVAPPGRVIASADYSQIELRIMAHISGDP 724 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + AF +G D++ T A+ F P+ +VS EQR KV+ L Y AK Sbjct: 725 SLLHAFHHGLDVHRATAAEVFGVPVSEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGLDR 784 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------YPEFA------------ 493 +Q++ + + + +A + L + PE Sbjct: 785 QAAKNYIQRYFERYPGVRQYMEETKARAKSLGYVETVFGRRLMLPEINSPNGPRRAAAER 844 Query: 494 --VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + + GTA +L+KKA A ++Q+ +L Sbjct: 845 AAINAPMQGTAADLIKKAMVAVQARLDAEKPEILMIMQVHDEL 887 >gi|330431802|gb|AEC16861.1| DNA polymerase I [Gallibacterium anatis UMN179] Length = 925 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 104/619 (16%), Positives = 208/619 (33%), Gaps = 112/619 (18%) Query: 5 FIDIETRSPQPL--PKVGVWAYAEQAV--ITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQ 59 ID ET S + VG+ E + + D P +L W + + L Sbjct: 352 AIDTETNSLNYMQAKLVGLSFALENGEAAYLPLQHHYLDCPQQLSW-----KTVLAALKT 406 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D + V N ++ + + G+++ T + + T LA F Sbjct: 407 VLEDPNIKKVGQNLKYDLTILARH-GVELQGV-VYDTMLESYTLDSTGRHNMDDLAKRFL 464 Query: 120 EHL-----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H +GK + F + ID T +L Sbjct: 465 HHDTIHFEDLAGKGKGQLT-FDQIEIDKAAEYAAEDAD----------------VTFKLH 507 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + + G ID DL+ + + I +L++ Sbjct: 508 QVLWPQLNQTPSLVKLFTEVELPLSQVLARMERNGVLIDSDLLYQQSQEINARLIQLEQQ 567 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 +L + T L+ LF G+ ++ + S + + +LA + L +L Sbjct: 568 AHQLAGQAFNLA-STKQLQEILFGKLGLPVLKKTPKGAPST-NEEVLEELAYEHELPKLL 625 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 KL + L + + GR+ + + TGR S QN+P + Sbjct: 626 VEHRGFSKLKSTYTDKLPQMIDPNTGRVHTSY-HQAVTITGRLSSSDPNLQNIPTRS--- 681 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G K+V AD + IE R++A ++ + Sbjct: 682 ---------------------EEGRKIRQAFIAPQGFKVVAADYSQIELRIMAHLSADAG 720 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 AF++G D++ +T A+ F+ P+++V+ +QR K + L Y A+ + + Sbjct: 721 LAYAFSHGLDVHRSTAAEVFDVPLEQVTSQQRYRAKAINFGLIYGMSAFGLARQLQIPRN 780 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 + ++ F + + +S + + Sbjct: 781 EAQTYIDRYFHRYPGVKQFMNDIQEKAKQQGYVETLLGRRLYLPELKSSNGMRRKAAERV 840 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A+ + GTA +++KKA + + ++ + V V + Sbjct: 841 AINAPMQGTAADIIKKAMIDIDRFI---------ADKNDIRMIMQVHDELVFEVKEDKVE 891 Query: 553 RHKRDVHIVLPSSRRLVYS 571 +++ + ++ ++ +L Sbjct: 892 YYEKIIKDMMENAVKLSVP 910 >gi|12229815|sp|Q9S1G2|DPO1_RHILE RecName: Full=DNA polymerase I; Short=POL I gi|5596366|gb|AAD45559.1|U86403_1 DNA polymerase I [Rhizobium leguminosarum] Length = 1016 Score = 281 bits (719), Expect = 2e-73, Method: Composition-based stats. Identities = 98/509 (19%), Positives = 181/509 (35%), Gaps = 89/509 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE+V+ VA N ++ +L K+ I ++ + T +++ + L+ Sbjct: 488 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 544 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G K ++ D RA H Y D + T Sbjct: 545 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 589 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 590 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 649 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S + LA L R Sbjct: 650 EIYVLAGERF-NIGSPKQLGDILFGKMGLSGGSKTK-TGQWSTSAQVLEDLAAAGFELPR 707 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V + + T ++ TGR S QN+P + Sbjct: 708 KIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 765 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 766 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 803 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 804 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 863 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 864 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 923 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A+ + G+A +++++A ++++ Sbjct: 924 AAINAPIQGSAADVIRRAMIKIEPALVEV 952 >gi|24376141|ref|NP_720184.1| DNA polymerase I [Shewanella oneidensis MR-1] gi|24351181|gb|AAN57628.1|AE015898_11 DNA polymerase I [Shewanella oneidensis MR-1] Length = 922 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 107/557 (19%), Positives = 192/557 (34%), Gaps = 100/557 (17%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S L + A +A A+ + P +L ++ L Sbjct: 346 AVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQL----DKQFALEKLRPI 401 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNFS 119 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 402 LEDAKLKKVGQNLKYDISVLANA-GITLQGVAF-DTMLESYVFNSVASRHDMDGLALKYL 459 Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H E GK F + S+++ Y D + T L + Sbjct: 460 GHKNIAFEDIAGKGAKQLTFNQISLETAA----------------PYAAEDADITLRLHQ 503 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P +D E L + I +G ID L+ + E +A++ +L+ Sbjct: 504 HLWPRLEKEAELASVFTDIELPLIHILSDIERQGVFIDSMLLGQQSEELARKIDELETKA 563 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + S L++ F G ++ + S + +LA D L ++ Sbjct: 564 YDIAGEKFNLS-SPKQLQVLFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDFPLPKVIL 621 Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 622 EHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT---- 676 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + +R IA G+K++ AD + IE R++A ++ + Sbjct: 677 --------------------VEGRRIRQAFIAPEGRKILAADYSQIELRIMAHLSQDAGL 716 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AFA G+DI+ T A+ F T D V+ EQR K + L Y A+ + Sbjct: 717 LNAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNE 776 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFA 493 + + + + +A + + + A Sbjct: 777 AQTYIDTYFARYPGVLRYMEETRASAADLGYVSTLFGRRLYLPEIRDRNAMRRQAAERAA 836 Query: 494 VKDKLIGTACELVKKAW 510 + + GTA +++KKA Sbjct: 837 INAPMQGTAADIIKKAM 853 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ + M + T+ +++ VHDE+V E ++ +C LM K Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901 >gi|326318033|ref|YP_004235705.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374869|gb|ADX47138.1| DNA polymerase I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 927 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 104/584 (17%), Positives = 192/584 (32%), Gaps = 118/584 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP----- 54 +D ET S L A I +++ + +P Sbjct: 354 ALDTETTSLDELR----------AEIVGLSFSVEPGAAAYIPLAHSGPDAPEQLPLDAVL 403 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNAC 113 L +L D + + + ++R +F DI + + T + + + A Sbjct: 404 ERLKPWLEDGSRAKLGQHVKYDRHVFANH---DIGVRGYVHDTMLQSYVLEVHKPHNLAS 460 Query: 114 LALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LA G+ I+ C P+ + Y D + T Sbjct: 461 LAER--------HTGRTGISYEDLCGKGAKQIPFAQVPV------EQAAAYSCEDSDQTL 506 Query: 172 ELFKRLIPLSDGE---RDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ + L PL + + R ++ L+ I G ID + + + Q KL+ Sbjct: 507 DVHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDPATLQQQSHDLGQRILKLE 566 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ + + L F G+ +V + T + +LA+D L Sbjct: 567 QEAYDIAGQPF-NLGSPKQLGEIFFDKLGLPVVKKT-ATGARSTDEEVLEKLAEDYPLPA 624 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++ KL + LS+ GR+ + TGR S QN+P + Sbjct: 625 KILEHRSLSKLKGTYTDKLSQLADPRTGRVHTHYA-QAVAVTGRLSSNEPNLQNIPIRT- 682 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR +A G+ + AD + IE R++A ++G+ Sbjct: 683 -----------------------SEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGD 719 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 D ++AF G D++ T A+ F +D+VS EQR KV+ L Y A+ Sbjct: 720 DALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGID 779 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 + ++ Q + D +A + + + Sbjct: 780 NKAAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAE 839 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + GTA +L+KKA A + ++Q+ +L Sbjct: 840 RAAINAPMQGTAADLIKKAMVAVQAVLDADKPQVLMIMQVHDEL 883 >gi|114049481|ref|YP_740031.1| DNA polymerase I [Shewanella sp. MR-7] gi|113890923|gb|ABI44974.1| DNA polymerase I [Shewanella sp. MR-7] Length = 922 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 106/558 (18%), Positives = 192/558 (34%), Gaps = 100/558 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A A+ + P +L ++ L Sbjct: 345 MAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAPQQL----DKQTALEKLRP 400 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 401 ILEDAKLKKVGQNLKYDISVLANA-GIQLKGVVF-DTMLESYVFNSVASRHDMDGLALKY 458 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 459 LGHKNIAFEDIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P +D E L + I +G ID L+ + + +A++ +L+ Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + S L++ F G ++ + S + +LA D L ++ Sbjct: 563 AYDIAGEKFNLS-SPKQLQVLFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDFPLPKVI 620 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 621 LEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G+K++ AD + IE R++A ++ + Sbjct: 677 ---------------------EEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D V+ EQR K + L Y A+ + Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERA 835 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 836 AINAPMQGTAADIIKKAM 853 Score = 46.7 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M + T+ +++ VHDE+V E ++ +C LM K Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEITMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901 >gi|163748902|ref|ZP_02156154.1| DNA polymerase I [Shewanella benthica KT99] gi|161331676|gb|EDQ02481.1| DNA polymerase I [Shewanella benthica KT99] Length = 917 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 110/579 (18%), Positives = 205/579 (35%), Gaps = 103/579 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + ID ET S L + A +A + + D P +L +Q+ + L Sbjct: 340 IAIDTETTSLNYMEAKLVGISFAIEAGKAAYLPLGHDYLDAPKQL----DQAEALAKLKP 395 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L + + V N ++ +F +GI + + T + + N + + LAL + Sbjct: 396 LLENPELKKVGQNLKYDISIFAN-VGIKLQGIAF-DTMLESYVFNSVATKHNMDDLALKY 453 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 H E I N + ++ Y D + T L + L Sbjct: 454 LGHKNISFE-----------EIAGKGVKQLTFNQIDL-EIAAPYAAEDADITLRLHQHLW 501 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P +D E L + I G ID ++ + E +A+ +L++ ++ Sbjct: 502 PRLEKEPQLAAVFTDIELPLIQILSDIERGGVLIDGMMLGQQSEELARTIDELEQKAFEI 561 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 S L+ F G ++ + S + + +LA D L ++ Sbjct: 562 AGEKFNLS-SPKQLQALFFEKLGYPIIKKTPKGAPST-AEDVLVELALDYPLPKIILQHR 619 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL + L V++ GR+ + A+ TGR S QN+P + Sbjct: 620 SLAKLKSTYTDKLPLMVNAQSGRIHTSYHQANAA-TGRLSSSEPNLQNIPIRT------- 671 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA GKK++ AD + IE R++A ++ + + A Sbjct: 672 -----------------EEGRRIRQAFIAREGKKVLAADYSQIELRIMAHLSQDKGLLTA 714 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA G+DI+ T A+ F+ D+V+ EQR K + L Y AK Sbjct: 715 FAAGKDIHRATAAEVFDVDFDEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDISRPEAQK 774 Query: 458 DLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKD 496 + + + + + +AE+ + + A+ Sbjct: 775 YIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINA 834 Query: 497 KLIGTACELVKKAW-----------RAKHQGVLQLWKDL 524 + GTA +++KKA R + + ++Q+ +L Sbjct: 835 PMQGTAADIIKKAMINIAHWIATETRGEIEMIMQVHDEL 873 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M N T+ ++++ VHDE+V E + +C LM Sbjct: 837 QGTAADIIKKAMINIAHWIATETRGEIEMIMQVHDELVFEVDSDKAEEMREKVCQLMADA 896 >gi|117922540|ref|YP_871732.1| DNA polymerase I [Shewanella sp. ANA-3] gi|117614872|gb|ABK50326.1| DNA polymerase I [Shewanella sp. ANA-3] Length = 922 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 106/558 (18%), Positives = 192/558 (34%), Gaps = 100/558 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A A+ + P +L ++ L Sbjct: 345 MAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAPQQL----DKQTALEKLRP 400 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 401 LLEDAKIKKVGQNLKYDISVLANA-GIKLQGVVF-DTMLESYVFNSIASRHDMDGLALKY 458 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 459 LGHKNIAFEDIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P +D E L + I +G ID L+ + + +A++ +L+ Sbjct: 503 QHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + S L++ F G ++ + S + +LA D L ++ Sbjct: 563 AYDIAGEKFNLS-SPKQLQVLFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDFPLPKVI 620 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 621 LEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G+K++ AD + IE R++A ++ + Sbjct: 677 ---------------------EEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D V+ EQR K + L Y A+ + Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERA 835 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 836 AINAPMQGTAADIIKKAM 853 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M + T+ +++ VHDE+V E ++ +C LM K Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901 >gi|114798581|ref|YP_760129.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] gi|114738755|gb|ABI76880.1| DNA polymerase I [Hyphomonas neptunium ATCC 15444] Length = 929 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 84/495 (16%), Positives = 153/495 (30%), Gaps = 82/495 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D V+ + N ++ +F + I + A G+ + Sbjct: 404 LKPMLEDPAVLKIGQNIKYDLSVFAQH-KIHVHPIDDTMLISFALNAGIHGHGMDDLSER 462 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 ++ K +A EY D + T L++ Sbjct: 463 YLGHKPITFKDVAGT----GKAQKSFAQVALDKAT---------EYAAEDADVTLRLWQA 509 Query: 177 LIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P E R L + + G ++D D++ +L Q L+ + + Sbjct: 510 LKPRLRTEQVTAVYETLDRPLGPVLAEMEQAGVKVDRDMLSRLSADFNQRMAALEAEAHE 569 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285 + L LF + ++ T + + LA D L R Sbjct: 570 QAGRSF-NIGSPKQLGEILFDEMNLPGGKKTK-TGAWVTDGDVLEGLAADGHALPRTIVD 627 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL L A++ GR+ + GA +TGR S QN+P + Sbjct: 628 WRMLSKLRSTYTEALQAAINKKTGRVHTSYMMAGA-QTGRLSSTDPNLQNIPVRT----- 681 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G LV AD + IE R+LA +A Sbjct: 682 -------------------EEGRKIRQAFIAEEGNVLVSADYSQIELRILAHMADIPALK 722 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF +G DI+ T ++ F PI+ + R K + + Y G + + Sbjct: 723 QAFKDGLDIHAMTASEMFGVPIEGMDPMVRRQAKAINFGIIYGISGFGLGRQLGIPSGEA 782 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLW--------------------MQDQYPEFAVK 495 ++ + + + D + + + A+ Sbjct: 783 NQYIKTYFERFPGIRQYMDETKEFARATGFVKTAFGRKIHLPDIKSKGPARSFAERQAIN 842 Query: 496 DKLIGTACELVKKAW 510 + G+A +++K+A Sbjct: 843 APIQGSAADIIKRAM 857 >gi|113868699|ref|YP_727188.1| DNA polymerase I [Ralstonia eutropha H16] gi|113527475|emb|CAJ93820.1| DNA polymerase I [Ralstonia eutropha H16] Length = 938 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 107/596 (17%), Positives = 193/596 (32%), Gaps = 98/596 (16%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVK-LWDRTE--QSAMPSDLLQ 59 ID ET S P+ VG+ E V A V L D + + + + Sbjct: 359 AIDTETTSLDPMQAQLVGISLSVEPGVACYIPVAHRGPDVAGLPDHGQLSREFVLGRMRA 418 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 +L D + + N ++ +F G+ + T + + + LA Sbjct: 419 WLEDASRPKLGQNLKYDVHVFANH-GVKLRGVA-HDTMLQSYVLASHRNHGMDSLAERLL 476 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 T E C +D EY D + T L +++ P Sbjct: 477 SLKTITYE------EVCGKGASQIGFDQID------LARATEYAAEDADVTLRLHRKMFP 524 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + E + ++ Q + G ID + + + Q L++ + Sbjct: 525 QVEAAAGLRRVYEEIEMPVSVVLQKVERNGVLIDAERLAAQSAELGQRMLALEQAAYEAA 584 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF + +V + S + +LA+D L +L Sbjct: 585 GQPF-NLGSPKQIGEILFSQMKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRG 642 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L + V+ GR+ + A TGR + QN+P + Sbjct: 643 LAKLKSTYTDKLPKMVNPQTGRVHTSYGQATAV-TGRLASTEPNLQNIPVRT-------- 693 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G +V AD + IE R++A I+G++ ++AF Sbjct: 694 ----------------EEGRRIREAFIAEPGSVIVSADYSQIELRIMAHISGDENLLRAF 737 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 ANGEDI+ T + F + VS EQR KV+ L Y A Sbjct: 738 ANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIEREAAKHY 797 Query: 459 LQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDK 497 + ++ + + + E LW+ + A+ Sbjct: 798 IDRYFMRYPGVAHYMEETRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAP 857 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +L+K + A + + ++Q+ +L E + + Sbjct: 858 MQGTAADLIKLSMIAVQGWLERDGLQTRQIMQVHDELVLEVPEHELELVKVRLPEL 913 >gi|86355811|ref|YP_467703.1| DNA polymerase I [Rhizobium etli CFN 42] gi|86279913|gb|ABC88976.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CFN 42] Length = 999 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 102/531 (19%), Positives = 186/531 (35%), Gaps = 97/531 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE+V+ VA N ++ +L K+ + +K + T +++ + L+ Sbjct: 471 LKALLEDESVLKVAQNLKYDYLLMKRY---GVETKSFDDTMLISYVLDAGTGAHGMDPLS 527 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G K +I D RA H Y D + T Sbjct: 528 EKFLGHTPIPYKDVAGS------GKANITFDLVDIDRATH---------YAAEDADVTLR 572 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 573 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 632 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S S + LA L R Sbjct: 633 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 690 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V + R T ++ TGR S QN+P + Sbjct: 691 KIVDWRQLTKLKSTYTDALPGYVHPETRRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 748 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 749 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 786 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 787 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 846 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 847 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 906 Query: 492 FAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 A+ + G+A +++++A +++ + + V++ Sbjct: 907 AAINAPIQGSAADVIRRAMIKMEPALAEAGLAERVRMLLQVHDELIFEVED 957 >gi|222084398|ref|YP_002542927.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] gi|221721846|gb|ACM25002.1| DNA-directed DNA polymerase [Agrobacterium radiobacter K84] Length = 1000 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 98/530 (18%), Positives = 182/530 (34%), Gaps = 94/530 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D +V+ +A N ++ +L K+ GI+ G ++ L+ Sbjct: 471 LKALLEDTSVLKIAQNLKYDYLLMKRY-GIETKGFDDTMLLSYVLDGGANATHGMDSLSE 529 Query: 117 NFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + H K G K +I D RA Y D + T L Sbjct: 530 RWLGHKPIAYKDVAGS------GKSNITFDLVDIDRATA---------YAAEDADVTLRL 574 Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ER L + + +RG ID ++ +L +AQ +L+++ Sbjct: 575 WLVLKPRLAAEKLATVYERLERPLVPVLAHMEERGITIDRQILSRLSGELAQGAARLEDE 634 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282 I L + L LF G+ ++ T + S + LA L R Sbjct: 635 IYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSAQVLEDLAAAGFELPRK 692 Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L V + + T ++ TGR S QN+P + Sbjct: 693 IVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT--- 749 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 750 ---------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVANIPQ 788 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AFA+G DI+ T ++ F PI+ + E R K + + Y G A S Sbjct: 789 LEQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIERS 848 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 G ++++ + + + + + S + ++ Sbjct: 849 EAGDYIKRYFERFPGIRDYMESTKATARDKGYVETIFGRRVHFPEIRSSNPSVRAFNERA 908 Query: 493 AVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 ++ + G+A +++++A +++ + + V++ Sbjct: 909 SINAPIQGSAADVIRRAMIKMEPALADAGLGDRVRMLLQVHDELIFEVED 958 >gi|114330791|ref|YP_747013.1| DNA polymerase I [Nitrosomonas eutropha C91] gi|114307805|gb|ABI59048.1| DNA polymerase I [Nitrosomonas eutropha C91] Length = 906 Score = 281 bits (718), Expect = 3e-73, Method: Composition-based stats. Identities = 112/606 (18%), Positives = 199/606 (32%), Gaps = 113/606 (18%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID ET S P+ VG+ E A A+ + P +L + + L + Sbjct: 332 SIDTETTSLNPMEAELVGLSLCTEPGHAAYIPLAHHYQGVPSQL----NREQVLQRLKPW 387 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---LN 117 L + + V N ++R +F G+ + T + + S LA L+ Sbjct: 388 LENSDIPKVGQNLKYDRHVFANH-GVMLNGIA-HDTLLQSYVLESHLSHDLDSLARRHLD 445 Query: 118 FSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 GK F + I Q G Y D + L Sbjct: 446 IQTISYDDVTGKGAKRIGFEQVEI----------------QQAGIYAAEDADIPLRLHHF 489 Query: 177 LIPL-----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P+ E L + I G +D DL+ + +A++ L++ Sbjct: 490 LYPIISKDAHLGHIYQQIEMPLLEVLFRIERNGVLLDTDLLREQSGELARQLVILEQQAH 549 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + T ++ LF + ++ + S + QLA D L ++ Sbjct: 550 SLAGRAF-NLNSTKQIQEILFGQHKLPVIKKTPKGAPST-DEEVLQQLALDYPLPKILLD 607 Query: 286 GSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ KL + L + V+ GR+ + TGR + QN+P + Sbjct: 608 YRSLAKLRSTYIDKLPQMVNRQTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 661 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA +G ++ AD + IE R++A I+ + I Sbjct: 662 -------------------PEGRRIREAFIAPSGWYIISADYSQIELRIMAHISQDAGLI 702 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF G+DI+ T A+ F + +V+ EQR KV+ L Y A S Sbjct: 703 RAFLGGQDIHSATAAEVFGISVGQVNAEQRRYAKVINFGLIYGMSEFGLATQLGIDRSAA 762 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAV 494 + ++ + + + + + A+ Sbjct: 763 RAFIDRYFARYPGVADYMQRTRELARQNGYVETVLGRRLQLPDIRSSQHNRRMGAERAAI 822 Query: 495 KDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLT----EGFACVVQEGGSISA 540 + GTA +++K A + HQ ++Q+ +L E VV+E I Sbjct: 823 NAPMQGTAADIIKLAMISVHQWLVKAPLQSKLIMQVHDELVLEVIEDELFVVKENLIILM 882 Query: 541 RRVANV 546 + Sbjct: 883 ENTFKL 888 >gi|116249927|ref|YP_765765.1| DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] gi|115254575|emb|CAK05649.1| putative DNA polymerase I [Rhizobium leguminosarum bv. viciae 3841] Length = 1016 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 97/509 (19%), Positives = 181/509 (35%), Gaps = 89/509 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE+++ VA N ++ +L K+ I ++ + T +++ + L+ Sbjct: 488 LKALLEDESILKVAQNLKYDYLLMKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 544 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G K ++ D RA H Y D + T Sbjct: 545 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 589 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 590 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLED 649 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S + LA L R Sbjct: 650 EIYVLAGERF-NIGSPKQLGDILFGKMGLSGGSKTK-TGQWSTSAQVLEDLAAAGFELPR 707 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V + + T ++ TGR S QN+P + Sbjct: 708 KIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 765 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 766 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 803 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 804 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 863 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 864 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 923 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A+ + G+A +++++A ++++ Sbjct: 924 AAINAPIQGSAADVIRRAMIKIEPALVEV 952 >gi|114769975|ref|ZP_01447585.1| DNA polymerase I [alpha proteobacterium HTCC2255] gi|114549680|gb|EAU52562.1| DNA polymerase I [alpha proteobacterium HTCC2255] Length = 932 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 94/537 (17%), Positives = 183/537 (34%), Gaps = 75/537 (13%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L+D +++ + N ++ +F + +++ A G + + Sbjct: 409 LRPVLQDPSIIKIGQNVKYDTKIFARY-DVNLAPVDDTMLLSYAINGGKHNHGMDYLSER 467 Query: 117 NFSEH----LTKMEEGKALIARFCKGSID-SPPYDCTRAN-HVQAWQLFGEYCKRDVEAT 170 + T + GK+ I F K SI+ + Y A+ ++ W+LF Sbjct: 468 YLNHKPISIKTLLGSGKSAIT-FDKVSINDAVNYAAEDADITLRLWKLFKPMLHESSVT- 525 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++++ L ER L + + G ++D + + ++ AQ L+ +I L Sbjct: 526 -KIYETL------ERPLIPVLAKMEMNGIKVDRNTLSRMSNNFAQSMSGLEAEIYNLAGQ 578 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLAS 284 + L LF + + T + LA + +L+ Sbjct: 579 TF-NVGSPKQLGEILFDKLELPGGKKGK-TGAYGTGVDVLEDLASEGHELPVKVLDWRQM 636 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + L ++ GR+ + GAS TGR S QN+P + + Sbjct: 637 SKLKSTYTDALQGHINPNTGRVHTSYVISGAS-TGRLSSTDPNLQNIPIRSEA------- 688 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA G L+ D + IE R+LA IA D +AF Sbjct: 689 -----------------GRKIREAFIAEEGNVLLSLDYSQIELRILAHIAKIDTLKQAFH 731 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G+DI+ T ++ FN P++ + R K + + Y G A+ + + Sbjct: 732 EGQDIHALTASQMFNVPLENMDPMVRRQAKAINFGVIYGISGFGLARNLRIPRKEAQSFI 791 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLI 499 + + T+ D + + + A+ + Sbjct: 792 DTYFERFPGIRTYMDETVSFAKENGYVETLFGRKIHTSEINAKGPQAGFAKRAAINAPIQ 851 Query: 500 GTACELVKKAWRAKHQGVLQL-WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 GTA +++++A + L K L + ++ E + V R +M + Sbjct: 852 GTAADVIRRAMVQMPNAISHLPAKMLLQVHDELIFEVNKDALNETTEVVRNIMEKAS 908 >gi|53803295|ref|YP_114980.1| DNA polymerase I [Methylococcus capsulatus str. Bath] gi|53757056|gb|AAU91347.1| DNA polymerase I [Methylococcus capsulatus str. Bath] Length = 906 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 96/599 (16%), Positives = 188/599 (31%), Gaps = 116/599 (19%) Query: 7 DIETRSPQPLPKV-----------GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS 55 D ET S + G AY A+ + P +L +++ + Sbjct: 333 DTET-SSLDYMRAEVIGLSFAVEPGAAAY------VPLAHDYPGAPPQL----DRAMVLE 381 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACL 114 L L D + + ++ + GI + R T + + + L Sbjct: 382 RLRPLLEDPGKAKLGQHLKYDANVLLNH-GIMLRGIR-HDTMLESYVLNSTATRHDMDSL 439 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 A + + T E A P+ Y D + T L Sbjct: 440 AERYLDRKTLHYEDVA------GKGAKQIPFARVSVEDA------CRYAAEDADVTLCLH 487 Query: 175 KRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P + E L + I G +D+ + + + + +++ + Sbjct: 488 RALWPRLESIPSLRAVYETIEIPLVPVLSRIERAGVLVDVYKLAEQSRELERRMAEVEAE 547 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + ++ L+ G+ ++ + T + S + LA+ L RL Sbjct: 548 ARAVAGETF-NLGSPKQIQTILYDKLGLPVIKKTP-TGQPSTDESVLQDLAETFELPRLI 605 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + + TGR S QN+P + Sbjct: 606 LEYRSLSKLKSTYTDKLPHQVNPVSGRVHTSY-HQAVAATGRLSSSDPNLQNIPVRT--- 661 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A G KL+ AD + IE R++A ++G+ Sbjct: 662 ---------------------EEGRRIRQAFVAPPGHKLLAADYSQIELRIMAHLSGDAN 700 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFA D++ T A+ F +++V+ QR K + L Y AK Sbjct: 701 LLAAFAEDADVHRATAAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAFGLAKQLGIQQK 760 Query: 454 HCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEF 492 + + + D +S + + Sbjct: 761 LAQGYIDLYFARYPGVRAYMDRTRESARELGYVETLFGRRLHVPDIQSRNGQRRQYAERT 820 Query: 493 AVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K+A A + ++Q+ +L A + + R Sbjct: 821 AINAPMQGTAADIIKRAMIALDAWIESSGAPLRMIMQVHDELVFEVAEDFVSEATATVR 879 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 56/187 (29%), Gaps = 22/187 (11%) Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS-ARR 542 + +D A ++ G A E V + R + + F Q G A+ Sbjct: 705 FAEDADVHRATAAEVFGVALEEVTSSQRRSAKAINFGLIYGMSAFGLAKQLGIQQKLAQG 764 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-------KGDCSYLNTATSQL-MRERTYG 594 ++ + + S+R L Y + D N Q R Sbjct: 765 YIDLYFARYPGVRAYMDRTRESARELGYVETLFGRRLHVPDIQSRNGQRRQYAERTAINA 824 Query: 595 GKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTL 647 +Q + DI+ M +++ VHDE+V E + T+ Sbjct: 825 P------MQGTAADIIKRAMIALDAWIESSGAPLRMIMQVHDELVFEVAEDFVSEATATV 878 Query: 648 CSLMTKN 654 M++ Sbjct: 879 REHMSRA 885 >gi|217975428|ref|YP_002360179.1| DNA polymerase I [Shewanella baltica OS223] gi|217500563|gb|ACK48756.1| DNA polymerase I [Shewanella baltica OS223] Length = 921 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 193/565 (34%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A + + P + D+T L Sbjct: 344 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQ-IDKT---VALEKLRP 399 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 400 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 457 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 458 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 501 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I +G ID L+ + + +A++ L+E Sbjct: 502 QHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + L++ F G + + S + +LA D L ++ Sbjct: 562 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 619 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 620 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 676 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y A+ Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWI 859 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ + M N T+ +++ VHDE+V E ++ +C+LM + Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900 >gi|153002841|ref|YP_001368522.1| DNA polymerase I [Shewanella baltica OS185] gi|151367459|gb|ABS10459.1| DNA polymerase I [Shewanella baltica OS185] Length = 935 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 193/565 (34%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A + + P + D+T L Sbjct: 358 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQ-IDKT---VALEKLRP 413 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 414 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 471 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 472 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 515 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I +G ID L+ + + +A++ L+E Sbjct: 516 QHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 575 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + L++ F G + + S + +LA D L ++ Sbjct: 576 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 633 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 634 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 689 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 690 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 728 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y A+ Sbjct: 729 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 788 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 789 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 848 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 849 AINAPMQGTAADIIKKAMINIAQWI 873 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ + M N T+ +++ VHDE+V E ++ +C+LM + Sbjct: 855 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 914 >gi|126172309|ref|YP_001048458.1| DNA polymerase I [Shewanella baltica OS155] gi|125995514|gb|ABN59589.1| DNA polymerase I [Shewanella baltica OS155] Length = 921 Score = 280 bits (717), Expect = 4e-73, Method: Composition-based stats. Identities = 104/565 (18%), Positives = 193/565 (34%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A + + P ++ ++ L Sbjct: 344 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQI----NKTVALEKLRP 399 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 400 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 457 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 458 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 501 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I +G ID L+ + + +A++ L+E Sbjct: 502 QHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + L++ F G + + S + +LA D L ++ Sbjct: 562 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 619 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 620 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 676 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y A+ Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWI 859 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ + M N T+ +++ VHDE+V E ++ +C+LM + Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900 >gi|187929514|ref|YP_001900001.1| DNA polymerase I [Ralstonia pickettii 12J] gi|309781710|ref|ZP_07676443.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] gi|187726404|gb|ACD27569.1| DNA polymerase I [Ralstonia pickettii 12J] gi|308919351|gb|EFP65015.1| DNA polymerase I [Ralstonia sp. 5_7_47FAA] Length = 937 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 108/568 (19%), Positives = 186/568 (32%), Gaps = 95/568 (16%) Query: 6 IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY--- 60 ID ET S P+ VG+ + A V +D Q + + L + Sbjct: 359 IDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGFDAAAQLSRDTVLARMKLW 418 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFS 119 L DE+ V + ++ +F DI + T + + + LA Sbjct: 419 LEDESRKKVGQHLKYDAHVFANH---DIALRGIEHDTMLESYVLESHRNHGMDALAERVL 475 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 T E C +D + EY D + T L + L P Sbjct: 476 HLKTITYEAV------CGKGASQIGFDEVPLD------RATEYAAEDADVTLRLHRTLFP 523 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E ++ Q + G ID D + K + L+ + KL Sbjct: 524 KVAEDDKLRYVYEQIEMPASIVLQKMERNGVLIDADRLAKQSNELGLRLIDLEAEAHKLA 583 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 S + F + ++ + S + +LA+D L +L Sbjct: 584 GQPFNLS-SPKQIGDIFFNQMKLPVIKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRG 641 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 642 LAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT-------- 692 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G +V AD + IE R++A ++ ++ ++AF Sbjct: 693 ----------------EEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAF 736 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 G+D++ T A+ FN +V+ +QR + KV+ L Y A L Sbjct: 737 REGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDAAKLY 796 Query: 459 LQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDK 497 + ++ +++ D E LW+ + A+ Sbjct: 797 IDRYFARYPGAASYMDETRQRAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAP 856 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLT 525 + GTA +L+K + A +Q W D Sbjct: 857 MQGTAADLIKLSMLA-----VQGWLDAE 879 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618 RRL D+ G A R +Q + D++ M Sbjct: 829 GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMLAVQGWLDAE 879 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +V+ VHDE+V E P V L LM Sbjct: 880 AMRSRLVMQVHDELVLEVPQDELAVVRERLPELMC 914 >gi|167856246|ref|ZP_02478980.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] gi|167852633|gb|EDS23913.1| DNA polymerase I (POL I) [Haemophilus parasuis 29755] Length = 954 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 97/532 (18%), Positives = 180/532 (33%), Gaps = 103/532 (19%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L + + + N ++ +F + GI++ + T + + T LA Sbjct: 431 QLKPILENPNIRKIGQNIKYDLTIFARN-GIELQGVAF-DTMLQSYTLDSTGRHNMDNLA 488 Query: 116 LNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + H T +GK + F + +D EY D E T Sbjct: 489 ERYLGHQTIPFEELAGKGKHQLT-FDQIELDKA----------------TEYAGEDAEIT 531 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + L E L + + G ID +L I Q K+ Sbjct: 532 MKLHQLLWSELQKTPELVKLFEQIEMPLVSVLSRVERNGVLIDPAKLLAHSVEIEQRLKE 591 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278 L+ + + + + T L+ LF G+ ++ + S + + +LA+ Sbjct: 592 LETLVHQEAGEVFNLA-STKQLQEILFNKLGLPILKKTPKGAPST-NEEVLEELAQMGHQ 649 Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + L + KL + L + +++ GR+ + + TGR S QN+P Sbjct: 650 VPVLLMEHRGLSKLKSTYTDKLPQMINAQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPI 708 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + +R IA +G ++ AD + IE R++A + Sbjct: 709 R------------------------NEQGRRIRQAFIARDGYVILAADYSQIELRIMAHL 744 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448 A + IKAFA G+DI+ +T A+ F P++ V+ EQR K + L Y A Sbjct: 745 ANDANMIKAFAEGKDIHRSTAAEIFGVPLEAVTSEQRRSAKAINFGLIYGMSEFGLANQL 804 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQD 487 + ++ + Q + F + S + + Sbjct: 805 GISRTDAKKYMELYFQRYPAVQQFMLDIREKAAEKGYVETLFGRRLYLPEINSSNQMRRK 864 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQG---------VLQLWKDLTEGFAC 530 A+ + GTA +++K A Q ++Q+ +L Sbjct: 865 AAERVAINAPMQGTAADIIKVAMIGIDQAVRNCEDIAMIMQVHDELVFEVKA 916 >gi|304411973|ref|ZP_07393583.1| DNA polymerase I [Shewanella baltica OS183] gi|307305868|ref|ZP_07585614.1| DNA polymerase I [Shewanella baltica BA175] gi|304349523|gb|EFM13931.1| DNA polymerase I [Shewanella baltica OS183] gi|306911361|gb|EFN41787.1| DNA polymerase I [Shewanella baltica BA175] Length = 921 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 192/565 (33%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A + + P + D+T L Sbjct: 344 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQ-IDKT---VALEKLRP 399 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 400 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 457 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 458 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 501 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P + E L + I +G ID L+ + + +A++ L+E Sbjct: 502 QHLWPRLEKEAELAAMFIEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + L++ F G + + S + +LA D L ++ Sbjct: 562 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 619 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 620 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 676 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y A+ Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWI 859 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ + M N T+ +++ VHDE+V E ++ +C+LM + Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900 >gi|194432044|ref|ZP_03064333.1| Bbp42 [Shigella dysenteriae 1012] gi|194419573|gb|EDX35653.1| Bbp42 [Shigella dysenteriae 1012] gi|332089212|gb|EGI94319.1| DNA polymerase [Shigella dysenteriae 155-74] Length = 449 Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats. Identities = 120/333 (36%), Positives = 171/333 (51%), Gaps = 13/333 (3%) Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDC 147 P +RW T V A +GLP SL C L + K +EGKALI FCK +S Sbjct: 7 PVERWRDTMVQALAHGLPGSLGELCEVLGVPQDKAKDKEGKALIQLFCKPRPKNSKLRRA 66 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS--DGERDLWLLDQTINDRGYRIDLDL 205 T H + W+ F Y D+EA RE++ RL + E LW DQ INDRG +D+ L Sbjct: 67 TSKTHPEEWRRFVAYAGLDIEAMREVYNRLPKWNYQGTELALWHRDQQINDRGVCMDMQL 126 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 E + QE+K+L + ++TDG ++++ Q AL ++ G++L DM TL+ + Sbjct: 127 ARAAIEAVDQEQKRLAKRTQEMTDGEVQAATQRDALIKHIVESYGVELPDMQRSTLERRI 186 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 ++ ++ K+L+ RL +S ++ K L + VS DGRLRGTLQF GASRTGRW+G +F Sbjct: 187 ANPDLPSAVKELLAIRLQASTTSTSKYKALMKGVSHDGRLRGTLQFCGASRTGRWAGRLF 246 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADL 381 QPQNLPR +E + + I+A N L +AS V + S + KL D Sbjct: 247 QPQNLPRPSLKQEQIDEGIEAPNAAAKTLKCLQIASGAVYTDDAGSWSELHDTKLQALDS 306 Query: 382 AGIEARVLAWIAGEDW------KIKAFANGEDI 408 EA + W +KAF G + Sbjct: 307 ILTEAAGAPVLVAYHWKHDLERLLKAFPRGRHL 339 >gi|313496494|gb|ADR57860.1| PolA [Pseudomonas putida BIRD-1] Length = 915 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 94/572 (16%), Positives = 183/572 (31%), Gaps = 103/572 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ ++ P +L ++ A+ L L D V N+ ++ + Sbjct: 364 AAYVPLAHDYEGAPAQL----DREAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAI 419 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 T + + + LA + +H T E GK F + ++D Sbjct: 420 EMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDK 479 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 G Y D + T L L L D E L + Sbjct: 480 A----------------GPYAAEDADITLRLHDALQARLAQTPSVQPVLMDIEMPLVPVL 523 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + +L+ +L + L L+ G+ Sbjct: 524 ARIERQGALVDAELLKVQSGELGVKMAELELRAYELAGETF-NLGSPKQLGTILYDKLGM 582 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + L + ++ KL + L ++ GR+ Sbjct: 583 PVLSKTAKGQPSTAEAVLDELALQGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRI 642 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + Q + TGR S QN+P + +R Sbjct: 643 HTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRIR 677 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 678 QAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALEDVT 737 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 +QR K + L Y AK + ++ + + +A+ Sbjct: 738 TDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAA 797 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++K+A Sbjct: 798 EQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVKVDNWLSES 857 Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARR 542 + +LQ+ +L + + R+ Sbjct: 858 GLDARVILQVHDELVLEVREDLVQQVKDEIRQ 889 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 16/103 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + RRL D+ L R +Q + DI+ M Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVKVD 851 Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 ++L VHDE+V E + V + M++ Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQA 894 >gi|323136664|ref|ZP_08071745.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322397981|gb|EFY00502.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 996 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 111/541 (20%), Positives = 186/541 (34%), Gaps = 93/541 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D+ V+ +AHN ++ ++ + G+D+ T +++ T L + N L Sbjct: 470 LKPLLEDDAVLKIAHNMKYDLLVLARY-GVDVAP--IEDTMLISYT--LDTGRNNHGLDE 524 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +HL + +A + I RA EY D + T L++ Sbjct: 525 LTLKHLGHENIPFSAVAGSGRNFIGFARVALDRAT---------EYATEDADVTLRLWRA 575 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P ER + + RG ID ++ +L AQ+ +L+ DI Sbjct: 576 LKPRLAAEHMTNVYETLERPMVATLAGMERRGITIDRAMLSRLSGEFAQDMARLEADIFD 635 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280 L + L LF G+ + T S S + LA + IL+ Sbjct: 636 LAGETF-NLGSPKQLGDILFGKMGLPGAKKT-ATGAWSTSASVLEDLANEGNDFARRILD 693 Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S + L V+ GR+ + A+ TGR S QN+P Sbjct: 694 WRQLSKLKSTYTDALPGFVNKETGRVHTSYAL-AATTTGRLSSSDPNLQNIP-------- 744 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 A +R +AS G L+ AD + IE R+LA IA Sbjct: 745 ----------------VRNEAGRKIRKAFVASPGHVLISADYSQIELRLLAHIADIPQLK 788 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 KAFA+G DI+ T ++ F P+ + E R K + + Y G A Sbjct: 789 KAFADGIDIHAMTASEMFGVPVKDMPPEVRRRAKAINFGIIYGISAFGLANQLSIPREEA 848 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 G ++++ + + + + + S + + Y A+ Sbjct: 849 GAYIKRYFERFPGIRDYMEATKKLVREKGAVTTIFGRVCHFPRIGSANASDRAFYERAAI 908 Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + G A +++++A Q +LQ+ +L E ARRV Sbjct: 909 NAPIQGAAADIIRRAMVRMDDALASEGLKAQMLLQVHDELVFEAPKKEAEATIEIARRVM 968 Query: 545 N 545 Sbjct: 969 E 969 >gi|154250561|ref|YP_001411385.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] gi|154154511|gb|ABS61728.1| DNA polymerase I [Parvibaculum lavamentivorans DS-1] Length = 979 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 102/598 (17%), Positives = 193/598 (32%), Gaps = 99/598 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAE----QAVITLCAYAWDDEPVKLWDRTEQSAMP----- 54 L +D ET S P+ V +A + + D Q +P Sbjct: 392 LAVDTETDSLFPMQARLVGVSLSLLPGEACYIPLQHGAGGG-LDFADAGGQPQIPLKEAI 450 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L L D +++ + N F+ + ++ GI + A G+ + Sbjct: 451 ARLKPLLEDPSILKIGQNLKFDMTVLRQH-GIQLKGLDDTMLMSYALDAGVHGHGMDELS 509 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L+ E + + D P D A Y D + T L+ Sbjct: 510 ELHLGHKPISFAEVAGKGK--AQITFDQVPVDRATA-----------YAAEDADVTLRLW 556 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P ER L + + G ++D ++ +L +Q+ + +++I Sbjct: 557 HILKPRLVAERRVTVYETLERPLVSVLAEMERAGVKVDKAVLARLSGDFSQKMAQYEDEI 616 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA---KDLILNR 281 +L + L LF ++ ++ T + LA +L Sbjct: 617 YELAGERF-NIGSPKQLGEILFDKQSLEGGRKTK-TGAWSTDADTLEALAAKGHELPQRV 674 Query: 282 LASSGSAILK---LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L G + LK + L E ++ GR+ ++ TGR + QN+P + Sbjct: 675 LDWRGLSKLKSTYTDALPEYINPETGRIHTCYSL-ASTSTGRLASTEPNLQNIPVRTED- 732 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ +A G L+ AD + IE R+LA IA + Sbjct: 733 -----------------------GRKIRTAFVAEKGNLLISADYSQIELRLLAHIADIEA 769 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 KAFA G DI+ T ++ F PI+ + R K + + Y G A Sbjct: 770 LKKAFAEGLDIHAMTASEMFGVPIEGMESSVRRRAKAINFGIIYGISAFGLANQLGIPRQ 829 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEF 492 G + ++ + + D + +H + Sbjct: 830 EAGEYIDRYFKRFPGIRAYMDDTRDFAHKNGYVETIFGRRIHLPAINSKNPAEKSFMERA 889 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARRVA 544 A+ + G+A +++++A Q + ++ + + V E + +V Sbjct: 890 AINAPIQGSAADIIRRAMIRMPQALADAKLAARMLLQVHDELIFEVPEKEAEKTSKVV 947 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 9/74 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPD-TPYFSVGTLCSLM--T 652 +Q + DI+ M + ++L VHDE++ E P+ + + +M Sbjct: 895 IQGSAADIIRRAMIRMPQALADAKLAARMLLQVHDELIFEVPEKEAEKTSKVVSRIMSDA 954 Query: 653 KNPSWAKGLPLKAE 666 P+ A +PL + Sbjct: 955 AAPAVALTVPLDVD 968 >gi|17988108|ref|NP_540742.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|265992327|ref|ZP_06104884.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|17983861|gb|AAL53006.1| DNA polymerase i [Brucella melitensis bv. 1 str. 16M] gi|263003393|gb|EEZ15686.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] Length = 994 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 R+LA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 773 LRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 953 NEVEKTIPVVRRVME 967 >gi|163757541|ref|ZP_02164630.1| DNA polymerase I [Hoeflea phototrophica DFL-43] gi|162285043|gb|EDQ35325.1| DNA polymerase I [Hoeflea phototrophica DFL-43] Length = 980 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 93/505 (18%), Positives = 172/505 (34%), Gaps = 85/505 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC 113 +L L + V+ + N ++ ++ + +I K + T +L+ Sbjct: 452 DELKALLEEPAVLKIGQNLKYDMLVMAQH---NIEIKSFDDTMLLSYVLDAGQGGHGMDA 508 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ + H T G + K +I +A Y D E T L Sbjct: 509 LSERWLGHKTI---GYKDVTGSGKSAIPFAQVAIDKATA---------YAAEDAEVTLRL 556 Query: 174 FKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L ER L + + RG R+D ++ +L +AQ L+ + Sbjct: 557 WHALKVRLVSEGMTSVYERLERPLAPVLMRMEQRGIRVDRQILSRLSGELAQGAAALEAE 616 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282 I +L + L LF + ++ T + S + LA L R Sbjct: 617 IQELAGENF-NVGSPKQLGEILFDKMSLPGGSKTK-TGQWSTSAQALEDLAAAGHELPRK 674 Query: 283 ASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L ++ + R+ + A+ TGR S QN+P + Sbjct: 675 IVDWRQLTKLKSTYTDALPGFINPETKRVHTSFAM-AATTTGRLSSSDPNIQNIPVRT-- 731 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ +A G L+ AD + IE RVLA +A Sbjct: 732 ----------------------AEGRKIRTAFVAEPGNVLISADYSQIELRVLAHVANIP 769 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 +AFA+G DI+ T ++ F PI+ + E R K + + Y G A Sbjct: 770 QLTQAFADGVDIHAMTASEMFGVPIEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIER 829 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 S G ++++ + + D +AE+ + ++ Sbjct: 830 SEAGDYIRKYFERFPGIKDYMDATKAEAKENGYVTTIFGRRAHYPEIRSSNPQVRAFNER 889 Query: 492 FAVKDKLIGTACELVKKAWRAKHQG 516 A+ + G+A +++++A Sbjct: 890 AAINAPIQGSAADIIRRAMVRMEPA 914 >gi|153007482|ref|YP_001368697.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] gi|151559370|gb|ABS12868.1| DNA polymerase I [Ochrobactrum anthropi ATCC 49188] Length = 976 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 105/615 (17%), Positives = 200/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 389 LAFDTETTSLDPM----------QAELVGFSLALAPGRAAYIPLQHKSGAGDLLGGGMVE 438 Query: 51 SAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 +P + L L+ D +V+ +A N ++ ++ ++ I + + T +++ Sbjct: 439 GQIPLDEALAALKIVLEDASVLKIAQNMKYDWLVMRRH---GINTVSFDDTMLISYVLDA 495 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 496 GTGSHGMDPLSERWLGHTPIPYKDVAGS------GKSAVSFDMVDLDRATA--------- 540 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 541 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLACMEERGIAVDRQVLSRLSG 600 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I +L + L LF + ++ T + S + Sbjct: 601 DLAQAAAAYEDEIYELAGERF-NIGSPKQLGDILFGKMSLSGASKTK-TGQWSTSAQVLE 658 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + + T ++ TGR S Sbjct: 659 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPETKRVHTSYAMASTSTGRLSSSDP 718 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KLV AD + IE Sbjct: 719 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLVSADYSQIE 754 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 755 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 814 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 815 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFARENGYVETIFGRRAHYPDIRA 874 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G+A +++++A + +LQ+ +L Sbjct: 875 SNPQVRAFNERAAINAPIQGSAADIIRRAMIRMEDALAEQNLAARMLLQVHDELIFEVPD 934 Query: 531 VVQEGGSISARRVAN 545 E R + Sbjct: 935 NEVEKTIPVVRHIME 949 >gi|77456284|ref|YP_345789.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] gi|77380287|gb|ABA71800.1| DNA polymerase I [Pseudomonas fluorescens Pf0-1] Length = 935 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 96/593 (16%), Positives = 194/593 (32%), Gaps = 113/593 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSL 74 A+QA + ++A T + D L L D + V ++ Sbjct: 361 AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPNKLKVGQHAK 420 Query: 75 FERILFKKTLGIDIPSKRWI------CTSVLARTNGLPS-SLKNACLALNFSEHLT---K 124 F+ + ++ T + + + LA + +H T + Sbjct: 421 FDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLDHTTVSFQ 480 Query: 125 MEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179 GK F + ++ + G Y D + T L + L Sbjct: 481 DIAGKGAKQLTFDQIAL----------------EQAGPYAAEDADVTLRLHQTLFDKLSA 524 Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L+D E L + I +G +D +L+ + + L+ + ++ Sbjct: 525 IPSLASVLTDIEIPLVPVLARIERQGAFVDAELLGIQSIELGNKMIALEREAFEIAGEEF 584 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILK 291 + L + L+ G+ ++ + S + +LA+D L ++ ++ K Sbjct: 585 -NLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEE-VLAKLAEDDHRLPKVLMEHRSMSK 642 Query: 292 LNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E ++ GR+ + + TGR S QN+P + Sbjct: 643 LKSTYTDRLPEQINPRTGRIHTSY-HQAVASTGRLSSSDPNLQNIPVRT----------- 690 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G KL+ AD + IE R++A ++ ++ + AF N Sbjct: 691 -------------AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNN 737 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQ 461 D++ T A+ F +++V+ +QR K + L Y GA+ + Sbjct: 738 LDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDT 797 Query: 462 FSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLIG 500 + + D +A++ L++ + A+ + G Sbjct: 798 YFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAERTAINAPMQG 857 Query: 501 TACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 TA +++KKA W ++ + + V+E R V Sbjct: 858 TAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVREEIRVH 910 >gi|157959932|ref|YP_001499966.1| DNA polymerase I [Shewanella pealeana ATCC 700345] gi|157844932|gb|ABV85431.1| DNA polymerase I [Shewanella pealeana ATCC 700345] Length = 918 Score = 280 bits (716), Expect = 5e-73, Method: Composition-based stats. Identities = 108/565 (19%), Positives = 199/565 (35%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + ID ET S L + A +A + + D P +L +++ + L Sbjct: 341 IAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLEHDYVDAPEQL----DRALVFEKLQP 396 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L DE + V N ++ +F +GI + ++ T + + N + S LAL + Sbjct: 397 LLEDENLKKVGQNLKYDISIFAN-IGITLRGVQF-DTMLESYVFNSVASKHNMDDLALKY 454 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK + F + +++ Y D + T L Sbjct: 455 LGHKNISFEEIAGKGVKQLTFNQIPLETAA----------------PYAAEDADITLRLH 498 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L +D E L I +G ID L+ + E +A++ +L+ Sbjct: 499 QHLWSRLEKLPELASVFTDIELPLVNTLSNIERQGVLIDSMLLGQQSEELARKIDELEHK 558 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ S L+ F G ++ + S + +LA D L ++ Sbjct: 559 AHEIAGEPFNLS-SPKQLQALFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDYPLPKII 616 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 617 LEHRSLAKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA GKK++ AD + IE R++A ++ + Sbjct: 673 ---------------------EEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDTG 711 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFA G+DI+ T A+ F+ +V+ +QR K + L Y AK + Sbjct: 712 LLTAFAEGKDIHKATAAEVFDVDFSEVTSDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRA 771 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + + +A + + + Sbjct: 772 EAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERA 831 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 832 AINAPMQGTAADIIKKAMINIAQWI 856 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA------TKNGYDI-VLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M N G I ++ VHDE+V E + S+ +C LM Sbjct: 838 QGTAADIIKKAMINIAQWIETETQGEIIMIMQVHDELVFEVDEAKADSLQAKVCELMAAA 897 >gi|12001916|gb|AAG43101.1|AF038541_1 DNA polymerase I [Acinetobacter calcoaceticus] Length = 923 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 105/573 (18%), Positives = 196/573 (34%), Gaps = 112/573 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 IDIET S + AE A A+ +++ P +L + Sbjct: 350 HFAIDIETTSLD-------YRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQL----NRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W ++LA N + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDTMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + Y Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAE 499 Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214 D T L++ +L P + E L+ ++ + + G R+D + L A Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFA 559 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + R+ L+ +++ D + + LF GI + T + S S + ++ Sbjct: 560 KTREGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617 Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L G A LK + L E +D T + TGR S QN+P Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G+ L+ AD + IE R++A Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 + +D + AF +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 714 FSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 ++Q+ Q + ++ ++ ++ Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +++K A + + + Sbjct: 834 KAAERAAINAPLQGSAADIIKLAMIEVDKVLPK 866 >gi|330501084|ref|YP_004377953.1| DNA polymerase I [Pseudomonas mendocina NK-01] gi|328915370|gb|AEB56201.1| DNA polymerase I [Pseudomonas mendocina NK-01] Length = 960 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 100/583 (17%), Positives = 196/583 (33%), Gaps = 109/583 (18%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + D ET S L + A +A A+++ P +L ++ A+ + L Sbjct: 381 IAFDSETTSIDAQQAQLVGLSFAVKAGEAAYIPLAHSYMGVPQQL----DRDAVLNALKP 436 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLALN 117 L D V ++ ++ + I + ++L + LAL Sbjct: 437 ILEDPAKAKVGQHAKYDINVLANA-STPIMVQGVAFDTMLESYVLDSTATRHDMDSLALK 495 Query: 118 FSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + H T + GK F + ++ + G Y D + T L Sbjct: 496 YLNHSTIRFEDIAGKGAKQLTFDQIAL----------------EQAGPYAAEDADVTLRL 539 Query: 174 FKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + L L D E L + I G +D L+ + + ++ +L+ Sbjct: 540 HQELWGRLEAIPSLAKVLRDIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELER 599 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ + L + L+ G ++ + S +D L ++ Sbjct: 600 KAFEIAGEEFNLA-SPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDYELPKV 658 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ KL + L E ++ GR+ + + TGR S QN+P + Sbjct: 659 LMQYRSLSKLKSTYTDKLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNIPIRT-- 715 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R +A G KL+ AD + IE R++A +A ++ Sbjct: 716 ----------------------AEGRRIRQAFVAPKGYKLMAADYSQIELRIMAHLAKDE 753 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + AF D++ T A+ F P+D+V+ +QR K + L Y AK Sbjct: 754 GLLDAFRYDLDVHKATAAEVFGVPLDQVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVER 813 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPE 491 + ++ T+ + +A+ + + M+ Sbjct: 814 KEAQAYIDRYFARYPGVLTYMESTRAQAAEQGYVETVYGRRLYLPEIHAQNQAMRKGAER 873 Query: 492 FAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 A+ + GTA +++K+A A + +LQ+ +L Sbjct: 874 AAINAPMQGTAADIIKRAMIAVDGWLQDSGIDARIILQVHDEL 916 Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 18/96 (18%) Query: 565 SRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNAT----K 619 RRL ++ N A + R +Q + DI+ M Sbjct: 852 GRRLYLPEIHAQ----NQAMRKGAERAAINAP------MQGTAADIIKRAMIAVDGWLQD 901 Query: 620 NGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +G D I+L VHDE+V E + V L SLM+ Sbjct: 902 SGIDARIILQVHDELVLEVREELINEVSAKLKSLMS 937 >gi|304393880|ref|ZP_07375805.1| DNA polymerase I [Ahrensia sp. R2A130] gi|303294079|gb|EFL88454.1| DNA polymerase I [Ahrensia sp. R2A130] Length = 978 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 108/565 (19%), Positives = 204/565 (36%), Gaps = 101/565 (17%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAY----AWDDEPVKLWDRTEQSAMP 54 + +D ET S L V + +A A+ + DD D + P Sbjct: 386 HVAVDTETTSLDAMACDLVGVSLATGPGRACYIPLAHLKDGSSDDG-----DMFSEGLDP 440 Query: 55 SD---------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 L L +V+ +A N ++ ++ + GI++ T +L+ Sbjct: 441 DQMDLKEALALLKPMLEAPSVLKIAQNLKYDWLVLSRY-GIEVGPFD--DTMLLSYVLDA 497 Query: 106 P-SSLKNACLAL-NFSEHLTKMEE----GKALIARFCKGSIDS-PPYDCTRAN-HVQAWQ 157 L+L + +E GK+++ F K SI+ Y A+ ++ W Sbjct: 498 GRGKHGMDALSLAHLDHTPIPFKEVAGSGKSMVT-FDKVSIEKASAYAAEDADVTLRLWT 556 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 L E +++RL ER L + + RG ID ++ +L +AQ+ Sbjct: 557 LLKARLV--AEKMVTVYERL------ERPLVPVLCRMEARGVEIDRQILSRLSGELAQKA 608 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD- 276 ++ DI ++ I + L LF + ++ T + + LA + Sbjct: 609 AGIEADIHEMAGEPINIA-SPKQLGELLFGKMELPGGKKTK-TGQWATGAQALEDLAAEG 666 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L R + KL + L ++ GR+ + ++ TGR+S QN+ Sbjct: 667 HELPRRIVDWRQLTKLKSTYTDALPTFINKTTGRVHTSYAM-ASTTTGRFSSSEPNLQNI 725 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + + +R+ IA++G KLV AD + IE RVLA Sbjct: 726 PVRTEA------------------------GRKIRTAFIAADGHKLVSADYSQIELRVLA 761 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 +A +AFA+G DI+ T ++ FN P++ + R K + + Y G A Sbjct: 762 HMADISQLKQAFADGIDIHAMTASEMFNVPVEGMDPSIRRQAKAINFGIIYGISAFGLAN 821 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485 ++ + + + D + + +S + M Sbjct: 822 NLGIDRGEASDYIKMYFERFPGIRDYMDETKKFAREHGYVETIFGRRAHYPEIKSSNPQM 881 Query: 486 QDQYPEFAVKDKLIGTACELVKKAW 510 + A+ + G+A +++++A Sbjct: 882 RAFNERAAINAPIQGSAADIIRRAM 906 >gi|167626125|ref|YP_001676419.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] gi|167356147|gb|ABZ78760.1| DNA polymerase I [Shewanella halifaxensis HAW-EB4] Length = 918 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 111/560 (19%), Positives = 200/560 (35%), Gaps = 100/560 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + ID ET S L + A +A A+ + D P +L +++ + L Sbjct: 341 IAIDTETTSLNYMEAKLVGISFAVEAGKAAYLPLAHDYIDAPEQL----DKAVVFEKLQP 396 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L DE + V N ++ +F GI + ++ T + + N + S LAL + Sbjct: 397 LLEDENLKKVGQNLKYDISIFANA-GICLLGVQF-DTMLESYVFNSVASKHNMDDLALKY 454 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK + F + S+++ Y D + T L Sbjct: 455 LGHKNISFEEIAGKGVKQLTFNQISLETAA----------------PYAAEDADITLRLH 498 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L +D E L TI +G ID L+ + E +A++ +L+ Sbjct: 499 QHLWSRLEKLPELASVFTDIEMPLVNTLSTIERQGVLIDSMLLGQQSEELARKIDELEHK 558 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ S L+ F G ++ + S + +LA D L ++ Sbjct: 559 AHEIAGQAFNLS-SPKQLQELFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDYPLPKII 616 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V++ GR+ + A+ TGR S QN+P + Sbjct: 617 LEHRSLAKLKSTYTDKLPLMVNAQTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA GKK++ AD + IE R++A ++ + Sbjct: 673 ---------------------EEGRRIRHAFIAPEGKKILAADYSQIELRIMAHLSQDKG 711 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFA G+DI+ T A+ F+ +V+ +QR K + L Y AK S Sbjct: 712 LLTAFAEGKDIHKATAAEVFDVDFSEVTTDQRRRAKAVNFGLIYGMSAFGLAKQLDIPRS 771 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + + +A + + + Sbjct: 772 EAQSYIDTYFKRYPGVLKYMEETRAIAADLGYVSTLFGRRLYLPAIKDRNAMRRQAAERA 831 Query: 493 AVKDKLIGTACELVKKAWRA 512 A+ + GTA +++KKA Sbjct: 832 AINAPMQGTAADIIKKAMIN 851 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA------TKNGYDI-VLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M N +G I ++ VHDE+V E + S+ +C LM Sbjct: 838 QGTAADIIKKAMINIANWIETETDGEIIMIMQVHDELVFEVDEAKADSLQAKVCELMAAA 897 >gi|114328629|ref|YP_745786.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] gi|114316803|gb|ABI62863.1| DNA polymerase I [Granulibacter bethesdensis CGDNIH1] Length = 933 Score = 280 bits (716), Expect = 6e-73, Method: Composition-based stats. Identities = 90/515 (17%), Positives = 162/515 (31%), Gaps = 86/515 (16%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 D+PV+ E +A + + L D TV+ + N F+ + ++ I Sbjct: 394 DQPVRQPAIAEIAAALNPI---LADPTVLKIFQNGKFDLAVLRRHQMPVIAPIDDTMLIS 450 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 A+ G + L+ ++ + P D A Sbjct: 451 YAQEAGAHGHGMDELSVLHLGHSPISYDQVTGTGR--NRLPFPQVPIDKATA-------- 500 Query: 159 FGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L+ L P ER L + + G R+D + + Sbjct: 501 ---YAAEDADVTLRLWHALRPRLRETKSLTVYEQMERPLVPVLCAMEAAGIRVDEAELRR 557 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + A ++ +I +L + L LF G+ S+ T + Sbjct: 558 MSADFALRMADMETEIHQLAGRPFNLA-SPKQLGEVLFDEIGLTGSKRSK-TGAWGTDAA 615 Query: 269 NITQLAKD-------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 + +A + IL+ + + L E V+ GR+ + Q + TGR Sbjct: 616 TLQAIADESGHALPARILDWRQLAKLKSTYADALVEDVNPRTGRVHTSFQM-AITTTGRL 674 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + +R IA G L+ AD Sbjct: 675 SSNEPNLQNIPIRT------------------------EEGSRIRRAFIADPGHVLISAD 710 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA +A +FANGEDI+ T ++ F P+ + R K + + Sbjct: 711 YSQIELRLLAHVADIPQLKDSFANGEDIHARTASEVFGVPMQGMDSLTRRRAKAINFGII 770 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------- 480 Y G A+ + + + + + E+ Sbjct: 771 YGISAFGLARSLAISPGEARQYIDAYFARYPGIRDYMERTKEEARINGFVVTPFGRRCWV 830 Query: 481 -----HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + A+ L G A +++K+A Sbjct: 831 PGIADRNPARRGYAERQAINAPLQGGAADIIKRAM 865 >gi|306842589|ref|ZP_07475238.1| DNA polymerase I [Brucella sp. BO2] gi|306287234|gb|EFM58722.1| DNA polymerase I [Brucella sp. BO2] Length = 978 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|261756014|ref|ZP_05999723.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|261745767|gb|EEY33693.1| DNA polymerase I [Brucella suis bv. 3 str. 686] Length = 995 Score = 280 bits (715), Expect = 6e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 408 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 457 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 458 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 514 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 515 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 559 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 560 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 619 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 620 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 677 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 678 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 737 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 738 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 773 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 774 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 833 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 834 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 893 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 894 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 953 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 954 NEVEKTIPVVRRVME 968 >gi|261218126|ref|ZP_05932407.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261321027|ref|ZP_05960224.1| DNA polymerase I [Brucella ceti M644/93/1] gi|260923215|gb|EEX89783.1| DNA polymerase I [Brucella ceti M13/05/1] gi|261293717|gb|EEX97213.1| DNA polymerase I [Brucella ceti M644/93/1] Length = 994 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 953 NEVEKTIPVVRRVME 967 >gi|256045914|ref|ZP_05448788.1| DNA polymerase I [Brucella melitensis bv. 1 str. Rev.1] gi|260563200|ref|ZP_05833686.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] gi|260153216|gb|EEW88308.1| DNA polymerase I [Brucella melitensis bv. 1 str. 16M] Length = 978 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 R+LA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRILAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|241663633|ref|YP_002981993.1| DNA polymerase I [Ralstonia pickettii 12D] gi|240865660|gb|ACS63321.1| DNA polymerase I [Ralstonia pickettii 12D] Length = 937 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 105/590 (17%), Positives = 189/590 (32%), Gaps = 96/590 (16%) Query: 6 IDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY--- 60 ID ET S P+ VG+ + A V D Q + + L + Sbjct: 359 IDTETTSIDPMLAQLVGISLSVKPGEACYIPVAHRGPDVAGLDAAAQLSRDTVLARMKLW 418 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFS 119 L DE+ V + ++ +F DI + T + + + LA Sbjct: 419 LEDESRKKVGQHLKYDAHVFANH---DIALRGIEHDTMLESYVLESHRNHGMDALAERVL 475 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 T E C +D + A+ D + T L + L P Sbjct: 476 HLKTITYEAV------CGKGASQIGFDEVPLDRATAY------AAEDADVTLRLHRTLFP 523 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E ++ Q + G ID D + K + +L+ + KL Sbjct: 524 KVAEDDKLRYVYEQIEMPTSIVLQKMERNGVLIDADRLAKQSNELGLRLIELEAEAHKLA 583 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + F + ++ + S + +LA+D L +L Sbjct: 584 GQPF-NLGSPKQIGDIFFNQMKLPVIKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRG 641 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L + V+ GR+ T A TGR + QN+P + Sbjct: 642 LAKLKSTYTDKLPKMVNPRTGRVHTTYGQATAV-TGRLASTDPNLQNIPVRT-------- 692 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G +V AD + IE R++A ++ ++ ++AF Sbjct: 693 ----------------EEGRRIREAFIAPEGSVIVSADYSQIELRIMAHLSQDEGLMRAF 736 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 G+D++ T A+ FN +V+ +QR + KV+ L Y A L Sbjct: 737 REGQDVHRATAAEVFNVTPLEVTPDQRRVAKVINFGLIYGMSAFGLASNLGIGRDAAKLY 796 Query: 459 LQQFSQNVKSTS-TFEDWEQAESHHLWM--------------------QDQYPEFAVKDK 497 + ++ + E+ Q+ H ++ + A+ Sbjct: 797 IDRYFARYPGAANYMEETRQSAREHGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAP 856 Query: 498 LIGTACELVK------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + GTA +L+K + W +L + + V + R Sbjct: 857 MQGTAADLIKLSMLAVQGWLEAEAMRSRLVMQVHDELVLEVPQDELAVVR 906 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 30/95 (31%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------T 618 RRL D+ G A R +Q + D++ M Sbjct: 829 GRRLWLPDINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMLAVQGWLEAE 879 Query: 619 KNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +V+ VHDE+V E P V L LM Sbjct: 880 AMRSRLVMQVHDELVLEVPQDELAVVRERLPELMC 914 >gi|71279137|ref|YP_271617.1| DNA polymerase I [Colwellia psychrerythraea 34H] gi|71144877|gb|AAZ25350.1| DNA polymerase I [Colwellia psychrerythraea 34H] Length = 936 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 105/616 (17%), Positives = 202/616 (32%), Gaps = 107/616 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V +A + ++D P +L ++ + + L L Sbjct: 362 DTETTSVHYMKAELVGVSFAIEVGKAAYVPLTHDYEDAPEQL----DKEWVLAQLKPLLE 417 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLAR-TNGLPSSLKNACLALNFSE 120 +T+ + N ++ + DI + T + + N + + LAL + + Sbjct: 418 SKTIKKIGQNLKYDANVLSHY---DIALQGIEFDTMIESYCYNSVATRHNMDALALKYLD 474 Query: 121 HLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + T + GK F + I+ + Y D + T L Sbjct: 475 YQTVHFEDVAGKGAKQLTFNQIDIEKAGH----------------YAAEDADITLRLHHA 518 Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + P ++ E L + + G ID D++ + + Q +L+ + Sbjct: 519 IFPALAETASMLSVFNEIEMPLLPVLARMEQTGVLIDSDILAEQSFTLGQRLDELEIEAH 578 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + L+ LF I ++ + S + +LA D L ++ Sbjct: 579 NLAGKSFNLA-SPKQLQQILFEDLKIPVIKKTPKGAPSTAEE-VLQELALDYPLPKVILE 636 Query: 286 GSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L VS T + TGR S QN+P + Sbjct: 637 NRGLSKLKSTYTDKLPLMVSDKTNRLHTSYHQAVTATGRLSSTDPNLQNIPIRS------ 690 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA K+V D + IE R++A ++ + + Sbjct: 691 ------------------EQGRKIRQAFIAPKDHKIVAIDYSQIELRIMAHLSNDKGLVT 732 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AF+ G+DI+ T A+ F + +V+ +QR K + L Y AK Sbjct: 733 AFSEGKDIHRATAAEIFAVELGEVTTDQRRSAKAINFGLIYGMSAFGLAKQLHIGRQQAQ 792 Query: 457 LDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFAVK 495 ++ Q + ED Q S +++ Y A+ Sbjct: 793 EYQDKYFQRYPGVLTYMEDTRQQASEQGYVETLYGRRLYLPDINAKNGMRKKAAERAAIN 852 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + GTA +++KKA A +L+ D ++ + + + + ++ Sbjct: 853 APMQGTAADIIKKAMLAVDSWLLEQNDD-------RIKMTMQVHDELIFEIHQDIVEETT 905 Query: 556 RDVHIVLPSSRRLVYS 571 + ++ + L Sbjct: 906 AKLVTLMNDAVELSVP 921 Score = 38.6 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 10/72 (13%) Query: 603 QAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654 Q + DI+ + M + + + VHDE++ E D + L +LM Sbjct: 856 QGTAADIIKKAMLAVDSWLLEQNDDRIKMTMQVHDELIFEIHQDIVEETTAKLVTLMNDA 915 Query: 655 PSWAKGLPLKAE 666 +PL AE Sbjct: 916 VE--LSVPLIAE 925 >gi|261314660|ref|ZP_05953857.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|261316782|ref|ZP_05955979.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261324239|ref|ZP_05963436.1| DNA polymerase I [Brucella neotomae 5K33] gi|265987853|ref|ZP_06100410.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|261296005|gb|EEX99501.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|261300219|gb|EEY03716.1| DNA polymerase I [Brucella neotomae 5K33] gi|261303686|gb|EEY07183.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|264660050|gb|EEZ30311.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] Length = 994 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 953 NEVEKTIPVVRRVME 967 >gi|330991543|ref|ZP_08315494.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] gi|329761562|gb|EGG78055.1| DNA polymerase I [Gluconacetobacter sp. SXCC-1] Length = 924 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 95/564 (16%), Positives = 175/564 (31%), Gaps = 97/564 (17%) Query: 39 DEPVKLWDRTEQSAMPS----DLLQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 V L D MP ++L+ L D +V+ V N+ F+ ++ + + Sbjct: 378 GHQVDLMDSLGTPQMPVGTALEILEPLFADPSVLKVFQNAKFDLLVLTQAGSVQPAPIDD 437 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 A++ G + L +E + + D RA Sbjct: 438 TMLISYAQSAGQHGQGMDELSRLTLDHSPIPYDEVTGT----GRNRVVFSQVDIARAT-- 491 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDL 203 Y D + T L++ L P + ER L + + G +D Sbjct: 492 -------PYAAEDADVTLRLWQVLRPRLRTSRALALYEEMERPLIPILADMERAGIAVDA 544 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263 D + + AQ ++ +I KL + L LF G+ ++ Sbjct: 545 DDLRAMSIEFAQRMGVIEAEIHKLAGREF-NVGSPKQLGEILFDEMGLPGGKRTKAG-AW 602 Query: 264 ILSHSNITQLAKD------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316 S + LA IL + + L ++ GR+ + Q + Sbjct: 603 GTDSSVLQDLADQGHDLPARILAWRQLAKLKSTYADALLNQINPATGRVHTSFQM-AVTT 661 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + +R +A+ G L Sbjct: 662 TGRLSSNDPNLQNIPIRT------------------------EEGGRIRRAFVAAPGHLL 697 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD + IE R+LA +A +AFA G+DI+ T ++ F P++ + R K + Sbjct: 698 VSADYSQIELRLLADVANIPALREAFALGQDIHARTASEVFGIPLEGMDPLTRRRAKAIN 757 Query: 437 LALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------- 484 + Y A + + + + + +AE+ Sbjct: 758 FGIIYGISAFGLGRQLGIPPGEARGYIDAYFARYPGIRDYMERVKAEARAKGYVTTPFGR 817 Query: 485 -------------MQDQYPEFAVKDKLIGTACELVKKAWRAK----------HQGVLQLW 521 ++ A+ L G A +++K+A + +LQ+ Sbjct: 818 RCWVPGIADKSAVRRNYAERQAINAPLQGGAADIIKRAMVRIPAALSDAGLDGRMLLQVH 877 Query: 522 KDLTEGFACVVQEGGSISARRVAN 545 +L + + R+V Sbjct: 878 DELVFEVRKDDADRLAALVRQVME 901 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 7/101 (6%) Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMK 615 + + + + G ++ + R Y + N +Q + DI+ M Sbjct: 798 MERVKAEARAKGYVTTPFGRRCWVPGIADKSAVRRNYAERQAINAPLQGGAADIIKRAMV 857 Query: 616 NA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 + G D ++L VHDE+V E + L Sbjct: 858 RIPAALSDAGLDGRMLLQVHDELVFEVRKDDADRLAALVRQ 898 >gi|262374856|ref|ZP_06068090.1| DNA polymerase I [Acinetobacter lwoffii SH145] gi|262309869|gb|EEY90998.1| DNA polymerase I [Acinetobacter lwoffii SH145] Length = 920 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 93/589 (15%), Positives = 201/589 (34%), Gaps = 102/589 (17%) Query: 2 SKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + D ET S + V A+ A A+ ++ P +L + + + + Sbjct: 346 KRFAFDTETTSLDYRIAQIVGFSVAFDAQNAYYVPLAHDYEGAPEQL----NREVILAQI 401 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLA 115 L DE+V + H+ ++ + + GI + W ++LA N + + +A Sbjct: 402 KPILEDESVKKIGHHLKYDAHVLENH-GIHL--AGWYFDTMLASYVLNSVATRHGMDDVA 458 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + HLT E GK + F + +++ + Y D T Sbjct: 459 RLYLSHLTTTYEQVAGKGAKQKTFNQIPLETAAH----------------YAAEDAHVTY 502 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L++ L L + E + + + + G +DL + +L + + L Sbjct: 503 RLYEVLSSKLQAHPELVNILHNIEVPVARVLTQMEENGIELDLAFLDQLGGEFSNTMQNL 562 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + I+++ + + LF G+ + T + S S + ++ + Sbjct: 563 ENQIMEIAGESF-NVSSPKQVGEVLFEKLGLKGGKKT-TTGQYSTSESVLEKIEHPIAQL 620 Query: 281 RLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L G + LK + L + + D T + TGR S QN+P + Sbjct: 621 ILEYRGLSKLKSTYTDGLCKQANPDTHRVHTSYHQALTATGRLSSTDPNLQNIPIR---- 676 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A G+ L+ AD + IE R++A ++ ++ Sbjct: 677 --------------------AEIGRQIRKAFVAPEGRVLLAADYSQIELRLMAHLSQDEA 716 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AF +G+D++ T A+ ++ V+ +QR K + L Y + Sbjct: 717 LLDAFIHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQ 776 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++Q+ + ++ ++ ++ Sbjct: 777 ESQDYIKQYFHRYPGIYDYMQRTRQVALEQGFVETLLGRRLYTPDIDARNMMVRKAAERA 836 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 A+ L G+A +++K A + + ++ + + V E + Sbjct: 837 AINAPLQGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVFEVDEDIA 885 Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 603 QAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 Q + DI+ M K ++L VHDE+V E + + L +M Sbjct: 843 QGSAADIIKMAMIEVDKMLPKDQAKMLLQVHDELVFEVDEDIADELAPKLAEVM 896 >gi|319943201|ref|ZP_08017484.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] gi|319743743|gb|EFV96147.1| DNA-directed DNA polymerase I [Lautropia mirabilis ATCC 51599] Length = 977 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 110/602 (18%), Positives = 196/602 (32%), Gaps = 119/602 (19%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---- 56 ID ET S P L + + Q + + P +P D Sbjct: 403 AIDTETTSKDPHAARLVGISLAVTPWQGCYIPVGHNYAGVP---------EQLPLDEVLA 453 Query: 57 -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L +L + V N ++ + GI + T + + + LA Sbjct: 454 VLKPWLESDAQQKVGQNIKYDMHVLANH-GITLRGV-VDDTMLESYVLEAHRTHGMDALA 511 Query: 116 -LNFSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + EE GK A F + ++D Y D + T Sbjct: 512 GRHLNRTTITYEEVAGKGAKAIGFDQVALDVA----------------TPYAAEDADVTL 555 Query: 172 ELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P + E + + G +D D + + +A++ ++L Sbjct: 556 QLHRTLWPAIEASERLRHIYRNIEMPTLQVLYDMERHGVLLDRDRLRAQSQQLAEQLQEL 615 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + +L + T L LF G+ +V + S S + +LA D L Sbjct: 616 ERQAHELAGQPF-NLGSTKQLGEILFERLGLPVVKKTPAGKPST-DESVLEKLALDYPLP 673 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ + KL + L E V GR+ T + TGR + QN+P + Sbjct: 674 KVLLQWRGLAKLKSTYTDKLPEMVDPKTGRVHTTYS-QAVAITGRLASSDPNLQNIPVRT 732 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +++ AD + IE R++A I+ Sbjct: 733 ------------------------PEGRRIREAFIAPPGHQMMSADYSQIELRIMAHISQ 768 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + +KAFA+GED++ T ++ F PI +V+ EQR KV+ L Y A Sbjct: 769 DAGLLKAFADGEDVHRATASEVFGVPIAEVNSEQRRYAKVINFGLIYGMSAFGLAANLGI 828 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------Y 489 + ++ + + + +A++ + Sbjct: 829 ERGAAQAYIDRYFARYPGVAAYMERTRAQAREQGYVETVFGRRLWLPEIGSSNMGRRQMA 888 Query: 490 PEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSIS 539 A+ + GTA +L+K A H + V+Q+ +L E Sbjct: 889 ERAAINAPMQGTAADLIKLAMIDVHAWLRRENLGARLVMQVHDELVLEVPDAEVERLKTD 948 Query: 540 AR 541 Sbjct: 949 LP 950 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 17/75 (22%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656 Q + D++ M G +V+ VHDE+V E PD + L T P+ Sbjct: 898 QGTAADLIKLAMIDVHAWLRRENLGARLVMQVHDELVLEVPD------AEVERLKTDLPA 951 Query: 657 WAKG-----LPLKAE 666 G +PL AE Sbjct: 952 RMAGVAQLSVPLLAE 966 >gi|261751451|ref|ZP_05995160.1| DNA polymerase I [Brucella suis bv. 5 str. 513] gi|261741204|gb|EEY29130.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 994 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 953 NEVEKTIPVVRRVME 967 >gi|261221353|ref|ZP_05935634.1| DNA polymerase I [Brucella ceti B1/94] gi|265997313|ref|ZP_06109870.1| DNA polymerase I [Brucella ceti M490/95/1] gi|260919937|gb|EEX86590.1| DNA polymerase I [Brucella ceti B1/94] gi|262551781|gb|EEZ07771.1| DNA polymerase I [Brucella ceti M490/95/1] Length = 994 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 953 NEVEKTIPVVRRVME 967 >gi|306844396|ref|ZP_07476986.1| DNA polymerase I [Brucella sp. BO1] gi|306275209|gb|EFM56959.1| DNA polymerase I [Brucella sp. BO1] Length = 978 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 108/615 (17%), Positives = 200/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDAALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L S L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTIS-SPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|241207104|ref|YP_002978200.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860994|gb|ACS58661.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 1016 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 98/509 (19%), Positives = 179/509 (35%), Gaps = 89/509 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE V+ VA N ++ +L K+ I ++ + T +++ + L+ Sbjct: 488 LKALLEDEAVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 544 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G K ++ D RA H Y D E T Sbjct: 545 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDAEVTLR 589 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 590 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQSAARLED 649 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S + LA L R Sbjct: 650 EIYVLAGERF-NIGSPKQLGDILFGKMGLSGGSKTK-TGQWSTSAQVLEDLAAAGFELPR 707 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V + + T ++ TGR S QN+P + Sbjct: 708 KIVDWRQVTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 765 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ KL+ AD + IE RVLA +A Sbjct: 766 ----------------------AEGRKIRTAFISTPRHKLISADYSQIELRVLAHVAEIP 803 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 804 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 863 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 864 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 923 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A+ + G+A +++++A ++++ Sbjct: 924 AAINAPIQGSAADVIRRAMIKIEPALVEV 952 >gi|197334225|ref|YP_002154843.1| DNA polymerase I [Vibrio fischeri MJ11] gi|197315715|gb|ACH65162.1| DNA polymerase I [Vibrio fischeri MJ11] Length = 932 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 91/563 (16%), Positives = 178/563 (31%), Gaps = 103/563 (18%) Query: 33 CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82 ++A ++ + L YL D+ V N ++ + + Sbjct: 374 LSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKVGQNLKYDASVLAR 433 Query: 83 TLGIDIPSKRWI-CTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 DI K T + + N + LAL + +H T E I Sbjct: 434 Y---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFE-----------EI 479 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWL 189 N + + Y D + T L L +D E L Sbjct: 480 AGKGKKQLTFNQIAL-EQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVS 538 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + +G ID L+ I Q +L++ ++ + L+ LF Sbjct: 539 VLSRMERKGVYIDDMLLSAQSLEIGQRLDELEKAAFEVAGEEF-NMNSPKQLQTILFEKM 597 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303 + ++ + S + + +LA D L +L + KL + L + ++ G Sbjct: 598 ELPVIKKTPSGAAST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTG 656 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P + Sbjct: 657 RVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRR 691 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++ + + AF+ G+DI+ T A+ I++ Sbjct: 692 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIEE 751 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474 V+ E R K + L Y AK + + + + + Sbjct: 752 VTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYMNVYFERYPGVMQYMEETRLL 811 Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ--- 515 + + + + A+ + GTA +++KKA + Sbjct: 812 ATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPMQGTAADIIKKAMILVDEWVE 871 Query: 516 ----GVLQLWKDLTEGFACVVQE 534 + L + + V+E Sbjct: 872 TEGKDRVNLLMQVHDELVFEVKE 894 >gi|190889822|ref|YP_001976364.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] gi|190695101|gb|ACE89186.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CIAT 652] Length = 997 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 100/531 (18%), Positives = 186/531 (35%), Gaps = 97/531 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE+V+ VA N ++ +L K+ I +K + T +++ + L+ Sbjct: 469 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAHGMDPLS 525 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G + ++ D RA H Y D + T Sbjct: 526 EKFLGHTPIPYKDVAGS------GRANVTFDLVDIDRATH---------YAAEDADVTLR 570 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 571 LWLVLKPRLVAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 630 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S S + LA L R Sbjct: 631 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 688 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V + + T ++ TGR S QN+P + Sbjct: 689 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 746 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 747 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 784 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 785 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 844 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 845 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 904 Query: 492 FAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 A+ + G+A +++++A +++ + + V++ Sbjct: 905 AAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVED 955 >gi|256823707|ref|YP_003147670.1| DNA polymerase I [Kangiella koreensis DSM 16069] gi|256797246|gb|ACV27902.1| DNA polymerase I [Kangiella koreensis DSM 16069] Length = 915 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 104/585 (17%), Positives = 194/585 (33%), Gaps = 123/585 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQSAMPSD 56 D ET S Y E A + ++A D+ E+ + Sbjct: 343 DTETTSLN---------YIE-AELVGMSFALDNGEAAYLPVAHSYMGAPEQLERDEVLKQ 392 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACL 114 L L E V N ++ + DI ++L N + S L Sbjct: 393 LKPLLESEKHKKVGQNLKYDMSVLANY---DIELAGIEFDTMLESYCLNSVASRHDMDTL 449 Query: 115 ALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 AL+ + K EE GK F + + + Y D + T Sbjct: 450 ALHHLNHVNIKFEEIAGKGKNQLTFDQIEV----------------EQAAPYASEDADIT 493 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L ++L P E L + + G +D L+L+ L + K+ Sbjct: 494 MRLHQKLWPELKQNEGPTQIFQHIEMPLLRILSKVERNGVLVDGKLLLEKSHLFEKRLKE 553 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+++ ++ + L++ + G+ ++ + S + +LA D L Sbjct: 554 LEKEAYEIAGKEF-NLGSPKQLQVIFYEELGLPILKKTPKGQPSTAEE-VLQELALDYPL 611 Query: 280 NRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L + GR+ + A+ TGR S QN+P + Sbjct: 612 PKLILEHRGLSKLKSTYTDKLPRMISDKTGRVHTSYHQAIAA-TGRLSSTEPNLQNIPIK 670 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R+ IA G K++ AD + IE R++A ++ Sbjct: 671 T------------------------EEGRSIRTAFIAPKGSKILAADYSQIELRIMAHLS 706 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ +KAF G D++ T A+ F+ P+D+V+ QR K + L Y AK Sbjct: 707 QDEGLLKAFEEGLDVHSATAAEVFDVPLDEVTSNQRRNAKAINFGLIYGMSAFGLAKQID 766 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 T + + + T+ + + S + + Sbjct: 767 TDRNTAQDYINTYFARYPGVETYMESTKEKAADLGYVETLYGRRLYLPEIHSKNGMRRKA 826 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKH---------QGVLQLWKDL 524 A+ + G+A +++K A + ++Q+ +L Sbjct: 827 AERTAINAPMQGSAADIIKLAMLEVDKWLKDVKGIKMIMQVHDEL 871 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 603 QAISRDILCEGMKNATK-----NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 Q + DI+ M K G +++ VHDE+V E + + + LM Sbjct: 837 QGSAADIIKLAMLEVDKWLKDVKGIKMIMQVHDELVFEVEEDKLELAQKEIPKLM 891 >gi|160877586|ref|YP_001556902.1| DNA polymerase I [Shewanella baltica OS195] gi|160863108|gb|ABX51642.1| DNA polymerase I [Shewanella baltica OS195] gi|315269784|gb|ADT96637.1| DNA polymerase I [Shewanella baltica OS678] Length = 921 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 192/565 (33%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A + + P + D+T L Sbjct: 344 MAVDTETTSLDYMVAELVGISFAVEAGKAAYLPLTHDYVGAPTQ-IDKT---VALEKLRP 399 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 400 LLEDPKLKKVGQNLKYDISILANA-GIKLQGVAF-DTMLESYVFNSVASRHDMDGLALKY 457 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 458 LGHKNISFEEIAGKGAKQLTFNQIPLETAA----------------PYAAEDADITLRLH 501 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I +G ID L+ + + +A++ L+E Sbjct: 502 QHLWPRLEKEAELAAMFTEVELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + L++ F G + + S + +LA D L ++ Sbjct: 562 AYDIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 619 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ A+ TGR S QN+P + Sbjct: 620 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTNYHQANAA-TGRLSSSEPNLQNIPIRT--- 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA +G+K++ AD + IE R++A ++ + Sbjct: 676 ---------------------EEGRRIRQAFIAPDGRKILAADYSQIELRIMAHLSQDAG 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D+V+ EQR K + L Y A+ Sbjct: 715 LLKAFAEGKDIHRATAAEVFGTDFDEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRH 774 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 775 EAQTYIDTYFARYPGVLRYMEETRAGAADLGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 834 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 835 AINAPMQGTAADIIKKAMINIAQWI 859 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 Q + DI+ + M N T+ +++ VHDE+V E ++ +C+LM + Sbjct: 841 QGTAADIIKKAMINIAQWIKTETQGEITMIMQVHDELVFEVDADKAEALKKTICTLMAQA 900 >gi|59710681|ref|YP_203457.1| DNA polymerase I [Vibrio fischeri ES114] gi|59478782|gb|AAW84569.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Vibrio fischeri ES114] Length = 932 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 91/563 (16%), Positives = 178/563 (31%), Gaps = 103/563 (18%) Query: 33 CAYAWDDEPVKLWDRTEQ-----SAMP-----SDLLQYLRDETVMCVAHNSLFERILFKK 82 ++A ++ + L YL D+ V N ++ + + Sbjct: 374 LSFAVEEGEAAYVPVAHDYLDAPEQLDRDWVLEQLKPYLEDDNKAKVGQNLKYDASVLAR 433 Query: 83 TLGIDIPSKRWI-CTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 DI K T + + N + LAL + +H T E I Sbjct: 434 Y---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFE-----------EI 479 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWL 189 N + + Y D + T L L +D E L Sbjct: 480 AGKGKKQLTFNQIAL-EQAAPYAAEDADITLRLHHVLNAKLEADEKLKSVFTDIELPLVS 538 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + +G ID L+ I Q +L++ ++ + L+ LF Sbjct: 539 VLSRMERKGVYIDDMLLSAQSVEIGQRLDELEKAAFEVAGEEF-NMNSPKQLQTILFEKM 597 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303 + ++ + S + + +LA D L +L + KL + L + ++ G Sbjct: 598 ELPVIKKTPSGAAST-NEEVLQELALDYPLPKLILEYRGLAKLKSTYTDKLPKMINPSTG 656 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P + Sbjct: 657 RVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------------------NEEGRR 691 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++ + + AF+ G+DI+ T A+ I++ Sbjct: 692 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDKALLAAFSAGKDIHAATAAEVKGVSIEE 751 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474 V+ E R K + L Y AK + + + + + Sbjct: 752 VTSEDRRRAKAINFGLIYGMSAFGLAKQIGIPRGEAQDYMNVYFERYPGVMQYMEETRLL 811 Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ--- 515 + + + + A+ + GTA +++KKA + Sbjct: 812 ATEQGYVETLYGRRLHLPEINARNGMRRKAAERAAINAPMQGTAADIIKKAMILVDEWVE 871 Query: 516 ----GVLQLWKDLTEGFACVVQE 534 + L + + V+E Sbjct: 872 TEGKDRVNLLMQVHDELVFEVKE 894 >gi|327191883|gb|EGE58876.1| DNA-directed DNA polymerase, DNA polimerase I protein [Rhizobium etli CNPAF512] Length = 997 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 100/531 (18%), Positives = 186/531 (35%), Gaps = 97/531 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE+V+ VA N ++ +L K+ I +K + T +++ + L+ Sbjct: 469 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAHGMDPLS 525 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G + ++ D RA H Y D + T Sbjct: 526 EKFLGHTPIPYKDVAGS------GRANVTFDLVDIDRATH---------YAAEDADVTLR 570 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 571 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 630 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S S + LA L R Sbjct: 631 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 688 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V + + T ++ TGR S QN+P + Sbjct: 689 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 746 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 747 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 784 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 785 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 844 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 845 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 904 Query: 492 FAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 A+ + G+A +++++A +++ + + V++ Sbjct: 905 AAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVED 955 >gi|149928109|ref|ZP_01916356.1| DNA polymerase I [Limnobacter sp. MED105] gi|149823195|gb|EDM82432.1| DNA polymerase I [Limnobacter sp. MED105] Length = 927 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 104/540 (19%), Positives = 187/540 (34%), Gaps = 106/540 (19%) Query: 46 DRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D T + +P +++L +L+ D +A N+ ++ + + T + + Sbjct: 389 DLTAEPQLPLAEVLAFLKPWFEDSDSPKIAQNAKYDLHVMANH--DVWVKGLFEDTMLAS 446 Query: 101 RTNGLPSSLKNACLALN-FSEHLTKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAW 156 LAL + + K EE GK F + ID+ T+ Sbjct: 447 YILEAHKPHGMDALALRWLNYNTIKYEEVAGKGASQITFDQVPIDT----ATK------- 495 Query: 157 QLFGEYCKRDVEATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDL 205 Y D E T L L +P D E + + G ID D Sbjct: 496 -----YAAEDAEVTLRLAHALKAELDKVPELAKLYRDVELPFGQVLFEVERNGVLIDSDK 550 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + IA + K ++E +L G + + LF G+ +V + S Sbjct: 551 LEAQSAEIADKLKLIEEQAFELAGGSF-NLNSPKQIGELLFDKLGLPVVKKTASGAPST- 608 Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGR 319 +++LA+D L ++ KL + L V++ GR+ + TGR Sbjct: 609 DEEVLSKLAEDYPLPAKLLEHRSLAKLKSTYTDKLPRMVNARTGRVHTNYA-QAVAVTGR 667 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 + QN+P + VR IA+ G LV A Sbjct: 668 LASNDPNLQNIPVRT------------------------AEGRRVREAFIAAPGCVLVSA 703 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A I+G++ I AF G DI+ T ++ F +++V+ + R KV+ L Sbjct: 704 DYSQIELRIMAHISGDEALIHAFNEGLDIHSATASEIFGVGLNEVTSDHRRTAKVINFGL 763 Query: 440 GYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLW 484 Y A L + ++ + F D +A++ LW Sbjct: 764 IYGMSAFGLAGNLGITREAAKLYIDRYFARYPGVAKFMDNVRAQAKEDGFVQTVFGRRLW 823 Query: 485 MQDQ----------YPEFAVKDKLIGTACELVKKAWRAK----------HQGVLQLWKDL 524 + + A+ + GT+ +L+K A + ++Q+ ++ Sbjct: 824 LPEIKSPNGPRRAGAERAAINAPMQGTSADLIKMAMVELSAWLKAEKLNSKMIMQVHDEV 883 >gi|23501037|ref|NP_697164.1| DNA polymerase I [Brucella suis 1330] gi|161618111|ref|YP_001591998.1| DNA polymerase I [Brucella canis ATCC 23365] gi|254705303|ref|ZP_05167131.1| DNA polymerase I [Brucella suis bv. 3 str. 686] gi|260567234|ref|ZP_05837704.1| DNA polymerase I [Brucella suis bv. 4 str. 40] gi|23346901|gb|AAN29079.1| DNA polymerase I [Brucella suis 1330] gi|161334922|gb|ABX61227.1| DNA polymerase I [Brucella canis ATCC 23365] gi|260156752|gb|EEW91832.1| DNA polymerase I [Brucella suis bv. 4 str. 40] Length = 979 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 392 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 441 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 442 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 498 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 499 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 543 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 544 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 603 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 604 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 661 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 662 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 721 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 722 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 757 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 758 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 817 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 818 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 877 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 878 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 937 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 938 NEVEKTIPVVRRVME 952 >gi|319424462|gb|ADV52536.1| DNA polymerase I [Shewanella putrefaciens 200] Length = 922 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 195/565 (34%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A A+ + P +L ++ L Sbjct: 345 IAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQL----DKQFALEKLRP 400 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D+ V V N ++ + GI + + T + + N + S LAL + Sbjct: 401 ILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVF-DTMLESYVFNSVASRHDMDGLALKY 458 Query: 119 SEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H + GK F + + ++ Y D + T L Sbjct: 459 LGHKNIGFEDIAGKGAKQLTFNQIPL----------------EVAAPYAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I +G ID L+ + + +A++ L+E Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ + L++ F G + + S + +LA D L ++ Sbjct: 563 AYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 620 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 621 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G+K++ AD + IE R++A ++ + Sbjct: 677 ---------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D V+ EQR K + L Y A+ + Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 835 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 836 AINAPMQGTAADIIKKAMINIAQWI 860 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 17/98 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617 RRL +++ + R +Q + DI+ + M N Sbjct: 813 GRRLYLPEIRDRNAMRRQGA---ERAAINAP------MQGTAADIIKKAMINIAQWIKTE 863 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 T+ +++ VHDE+V E ++ +C LM K Sbjct: 864 TQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901 >gi|120596878|ref|YP_961452.1| DNA polymerase I [Shewanella sp. W3-18-1] gi|120556971|gb|ABM22898.1| DNA polymerase I [Shewanella sp. W3-18-1] Length = 922 Score = 280 bits (715), Expect = 8e-73, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 195/565 (34%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A A+ + P +L ++ L Sbjct: 345 IAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQL----DKQFALEKLRP 400 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D+ V V N ++ + GI + + T + + N + S LAL + Sbjct: 401 ILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVF-DTMLESYVFNSVASRHDMDGLALKY 458 Query: 119 SEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H + GK F + + ++ Y D + T L Sbjct: 459 LGHKNIGFEDIAGKGAKQLTFNQIPL----------------EVAAPYAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I +G ID L+ + + +A++ L+E Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ + L++ F G + + S + +LA D L ++ Sbjct: 563 AYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 620 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 621 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G+K++ AD + IE R++A ++ + Sbjct: 677 ---------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D V+ EQR K + L Y A+ + Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 835 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 836 AINAPMQGTAADIIKKAMINIAQWI 860 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 17/98 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617 RRL +++ + R +Q + DI+ + M N Sbjct: 813 GRRLYLPEIRDRNAMRRQGA---ERAAINAP------MQGTAADIIKKAMINIAQWIKTE 863 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 T+ +++ VHDE+V E ++ +C LM K Sbjct: 864 TQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901 >gi|254713302|ref|ZP_05175113.1| DNA polymerase I [Brucella ceti M644/93/1] gi|254716344|ref|ZP_05178155.1| DNA polymerase I [Brucella ceti M13/05/1] Length = 978 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|265983303|ref|ZP_06096038.1| DNA polymerase I [Brucella sp. 83/13] gi|264661895|gb|EEZ32156.1| DNA polymerase I [Brucella sp. 83/13] Length = 994 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 197/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 NQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 514 GTGSHGMNPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 892 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952 Query: 531 VVQEGGSISARRVAN 545 E R V Sbjct: 953 NEVEKTIPVVRHVME 967 >gi|254707180|ref|ZP_05169008.1| DNA polymerase I [Brucella pinnipedialis M163/99/10] gi|254709275|ref|ZP_05171086.1| DNA polymerase I [Brucella pinnipedialis B2/94] gi|256030798|ref|ZP_05444412.1| DNA polymerase I [Brucella pinnipedialis M292/94/1] gi|256060266|ref|ZP_05450441.1| DNA polymerase I [Brucella neotomae 5K33] gi|256368587|ref|YP_003106093.1| DNA polymerase I [Brucella microti CCM 4915] gi|260169702|ref|ZP_05756513.1| DNA polymerase I [Brucella sp. F5/99] gi|261759239|ref|ZP_06002948.1| DNA polymerase I [Brucella sp. F5/99] gi|255998745|gb|ACU47144.1| DNA polymerase I [Brucella microti CCM 4915] gi|261739223|gb|EEY27219.1| DNA polymerase I [Brucella sp. F5/99] Length = 978 Score = 279 bits (714), Expect = 8e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|254700935|ref|ZP_05162763.1| DNA polymerase I [Brucella suis bv. 5 str. 513] Length = 978 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|256158819|ref|ZP_05456680.1| DNA polymerase I [Brucella ceti M490/95/1] gi|256254204|ref|ZP_05459740.1| DNA polymerase I [Brucella ceti B1/94] Length = 978 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|113972232|ref|YP_736025.1| DNA polymerase I [Shewanella sp. MR-4] gi|113886916|gb|ABI40968.1| DNA polymerase I [Shewanella sp. MR-4] Length = 922 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 106/554 (19%), Positives = 190/554 (34%), Gaps = 92/554 (16%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A A+ + P +L ++ L Sbjct: 345 MAVDTETTSLDYMVAELVGLSFAVEAGKAAYLPLAHDYVGAPQQL----DKQTALEKLRP 400 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ + GI + + T + + N + S LAL + Sbjct: 401 ILEDAKLKKVGQNLKYDISVLANA-GIQLQGVVF-DTMLESYVFNSVASRHDMDGLALKY 458 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 H E I N +Q + Y D + T L + L Sbjct: 459 LGHKNIAFE-----------DIAGKGAKQLTFNQIQL-ETAAPYAAEDADITLRLHQHLW 506 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P +D E L + I +G ID L+ + + +A++ +L+ + Sbjct: 507 PRLEKETELASVFTDIELPLIQILSDIERQGVFIDSMLLGQQSDELARKIDELETKAYDI 566 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 S L++ F G ++ + S + +LA D L ++ Sbjct: 567 AGEKFNLS-SPKQLQVLFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDFPLPKVILEHR 624 Query: 288 AILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 625 SLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT------- 676 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+K++ AD + IE R++A ++ + +KA Sbjct: 677 -----------------EEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKA 719 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA G+DI+ T A+ F T D V+ EQR K + L Y A+ + Sbjct: 720 FAEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQT 779 Query: 458 DLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKD 496 + + + + +A + + + A+ Sbjct: 780 YIDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINA 839 Query: 497 KLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 840 PMQGTAADIIKKAM 853 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M + T+ +++ VHDE+V E ++ +C LM K Sbjct: 842 QGTAADIIKKAMISIADWIKTDTQGEIAMIMQVHDELVFEVDADKAETLKLKVCELMAKA 901 >gi|120610610|ref|YP_970288.1| DNA polymerase I [Acidovorax citrulli AAC00-1] gi|120589074|gb|ABM32514.1| DNA polymerase I [Acidovorax citrulli AAC00-1] Length = 927 Score = 279 bits (714), Expect = 9e-73, Method: Composition-based stats. Identities = 105/612 (17%), Positives = 195/612 (31%), Gaps = 118/612 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP----- 54 +D ET S L A I +++ + +P Sbjct: 354 ALDTETNSLDELR----------AQIVGLSFSVEPGAAAYIPLAHSGPEAPEQLPLDTVL 403 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L +L D + + + ++R +F GID+ T + + + A L Sbjct: 404 ERLKPWLEDASRPKLGQHVKYDRHVFANH-GIDVRGYA-HDTMLQSYVLEVHRPHNLASL 461 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A G+ I+ C P+ + Y D + T + Sbjct: 462 AER--------HTGRTGISYEDLCGKGAKQIPFAQVPV------EQAAAYSCEDSDQTLD 507 Query: 173 LFKRLIPLSDGE---RDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + L PL + + R ++ L+ I G ID + + + Q +L++ Sbjct: 508 VHRVLWPLIEADEKLRAIYALEMESSEVLFRIERNGVLIDTATLQQQSHDLGQRILRLEQ 567 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + + + L F G+ +V + T + +LA+D L Sbjct: 568 EAYDIAGQPF-NLGSPKQLGEIFFDKLGLPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 625 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ KL + L + GR+ + TGR S QN+P + Sbjct: 626 ILEHRSLSKLKGTYTDKLGQLADPRTGRVHTHYA-QAVAVTGRLSSNEPNLQNIPIRT-- 682 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + AD + IE R++A ++G+D Sbjct: 683 ----------------------AEGRRVREAFVAPPGRVIASADYSQIELRIMAHLSGDD 720 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 ++AF G D++ T A+ F +D+VS EQR KV+ L Y A+ Sbjct: 721 ALLRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIDN 780 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + ++ Q + D +A + + + Sbjct: 781 KAAAAYIDRYFQRYPGVKQYMDETKASAKARGYVETVFGRRLYLPEINSPNGPRRGAAER 840 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A+ + GTA +L+KKA A + + + V + V +P Sbjct: 841 AAINAPMQGTAADLIKKAMVAV--------QAVLDADKPQVLMIMQVHDELVFELPEE-- 890 Query: 552 RRHKRDVHIVLP 563 + +P Sbjct: 891 --ESGWLRTEVP 900 >gi|163842398|ref|YP_001626802.1| DNA polymerase I [Brucella suis ATCC 23445] gi|163673121|gb|ABY37232.1| DNA polymerase I [Brucella suis ATCC 23445] Length = 978 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 96/544 (17%), Positives = 182/544 (33%), Gaps = 99/544 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L + L D +++ +A N ++ ++ ++ I + + T +++ S L+ Sbjct: 452 LKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDAGTGSHGMDPLS 508 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H K G K ++ D RA Y D + T Sbjct: 509 ERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA---------YAAEDADVTLR 553 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L++ L P ER L + + +RG +D ++ +L +AQ ++ Sbjct: 554 LWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSGDLAQAAAAYED 613 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L L LF G+ ++ T + S + LA + L R Sbjct: 614 EIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLEDLAAEGHPLPR 671 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L ++ + T ++ TGR S QN+P + Sbjct: 672 KIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDPNLQNIPVRT-- 729 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ IA G KL+ AD + IE RVLA +A Sbjct: 730 ----------------------AEGRKIRTAFIAEPGNKLISADYSQIELRVLAHVADIA 767 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 +AFA+G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 768 QLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPR 827 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 G ++ + + + + + + + ++ Sbjct: 828 EEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRASNPQVRAFNER 887 Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + G A +++++A + +LQ+ +L E R Sbjct: 888 AAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPENEVEKTIPVVR 947 Query: 542 RVAN 545 RV Sbjct: 948 RVME 951 >gi|12001918|gb|AAG43102.1|AF038542_1 DNA polymerase I [Pseudomonas fluorescens] Length = 939 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 97/593 (16%), Positives = 193/593 (32%), Gaps = 113/593 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSL 74 A+QA + ++A T + D L L D + V ++ Sbjct: 365 AQQAQLVGLSFAVQANEAAYIPLTHSYIGVPEQLDRDTVLRALKPILEDPNKLKVGQHAK 424 Query: 75 FERILFKKTLGIDIPSKRWI------CTSVLARTNGLPS-SLKNACLALNFSEHLT---K 124 F+ + ++ T + + + LA + H T + Sbjct: 425 FDMNILANCAIGGDQNEGITVRGIAFDTMLESYVLNSTATRHDMDSLAQKYLNHTTVSFQ 484 Query: 125 MEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179 GK F + ++ + G Y D + T L + L Sbjct: 485 DIAGKGAKQLTFDQIAL----------------EQAGPYAAEDADVTLRLHQTLFEKLSA 528 Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L+D E L + I +G +D DL+ + + L+ + ++ Sbjct: 529 IPSLASVLTDIEIPLVPVLARIERQGAFVDADLLGIQSIELGNKMVALEREAFEIAGEEF 588 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILK 291 + L + L+ G+ ++ + S + +LA+D L ++ ++ K Sbjct: 589 -NLGSPKQLGVILYEKLGLPVLKKTAKGQPSTAEE-VLAKLAEDDHRLPKVLMEHRSMSK 646 Query: 292 LNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E ++ GR+ + + TGR S QN+P + Sbjct: 647 LKSTYTDRLPEQINPRTGRIHTSY-HQAVASTGRLSSSDPNLQNIPVRT----------- 694 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G KL+ AD + IE R++A ++ ++ + AF N Sbjct: 695 -------------AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSRDEGLMNAFRNN 741 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQ 461 D++ T A+ F +++V+ +QR K + L Y GA+ + Sbjct: 742 LDVHTATAAEVFKVELNEVTSDQRRGAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDT 801 Query: 462 FSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLIG 500 + + D +A++ L++ + A+ + G Sbjct: 802 YFARYPGVREYMDRTRAQAADQGFVETIFGRRLYLPDINSNKPQERAAAERTAINAPMQG 861 Query: 501 TACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 TA +++KKA W ++ + + V+E R V Sbjct: 862 TAADIIKKAMVAVDNWLCASGLDAKVILQVHDELVLEVREDLVDQVREEIRVH 914 >gi|325291553|ref|YP_004277417.1| DNA polymerase I [Agrobacterium sp. H13-3] gi|325059406|gb|ADY63097.1| DNA polymerase I [Agrobacterium sp. H13-3] Length = 995 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 98/533 (18%), Positives = 178/533 (33%), Gaps = 91/533 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L DE V+ +A N ++ +L K+ G+ + S G + + Sbjct: 469 LKDLLEDEAVLKIAQNLKYDYLLMKRH-GVVMQSFDDTMLISYVLEAGKTTHGMDTLSER 527 Query: 117 NFSEHLT--KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K G K SI D +A Y D + T L+ Sbjct: 528 WLGHTPIAYKDVAGS------GKSSITFDFVDIDKATA---------YAAEDADVTLRLW 572 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P ER L + + +RG +D ++ +L +AQ+ +E++ Sbjct: 573 MVLKPRLAAERLTSVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAAAFEEEV 632 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283 +L + L LF G+ ++ T + S + LA + L R Sbjct: 633 YQLAGERF-NIGSPKQLGDILFGRMGLPGGSKTK-TGQWSTSAQVLEDLAAEGAELPRKI 690 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L V + T ++ TGR S QN+P + Sbjct: 691 VDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYALASTTTGRLSSSEPNLQNIPVRT---- 746 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 747 --------------------AEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIPQL 786 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 AF NG DI+ T ++ F P++ + E R K + + Y G A S Sbjct: 787 RSAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSE 846 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 G ++++ + + + + + S + M+ A Sbjct: 847 AGEYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPSMKAFNERAA 906 Query: 494 VKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISA 540 + + G+A +++++A + ++ + + V+EG Sbjct: 907 INAPIQGSAADIIRRAMVRIEPVLEAEKLSARMLLQVHDELIFEVEEGEIEKT 959 >gi|77164079|ref|YP_342604.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|254436145|ref|ZP_05049652.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] gi|76882393|gb|ABA57074.1| DNA polymerase A [Nitrosococcus oceani ATCC 19707] gi|207089256|gb|EDZ66528.1| DNA polymerase I superfamily [Nitrosococcus oceani AFC27] Length = 903 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 106/602 (17%), Positives = 201/602 (33%), Gaps = 122/602 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-----DRTEQSAMPSD----- 56 D+ET L Y E A I ++A D T +P + Sbjct: 330 DLET---NNLD------YIE-AEIVGLSFAIQPHEAMYIPLGHEDATAPPQLPREQVLAR 379 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115 L L D V N F+ + GI++ R + + + + LA Sbjct: 380 LKPLLEDPRHGKVGQNLKFDCNVLANY-GIELQGIR-HDSMLESYVLDSTATRHNMDSLA 437 Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + + T +M GK F + +I+ Y D + + Sbjct: 438 LKYLQRTTITYEMVAGKGAKQLPFNQVTIEKAA----------------PYAAEDADISL 481 Query: 172 ELFKRLIPLSDGERDLWLLDQ-----------TINDRGYRIDLDLVLKLQELIAQERKKL 220 +L P E L L Q + G +++ + + + +A K+L Sbjct: 482 QLHHCFWPRLQQEEGLRQLYQELEIPLIPVLSRMERNGVQVNTEQLKAQSDELAARLKRL 541 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 +++ +L + ++ L+ + + + T + + + + +LA D L Sbjct: 542 EQEAFELAGESFNLA-SPKQIQAILYEKLKLPVTRKTP-TGQPSTAETVLQELALDYPLP 599 Query: 281 RLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L + KL + L V+S GR+ + + TGR S QN+P + Sbjct: 600 QLLLEYRTLSKLKSTYTDRLPLQVNSHTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRS 658 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA G +LV AD + IE R++A ++ Sbjct: 659 ------------------------TEGRRIRQAFIAPPGYRLVAADYSQIELRIMAHLSE 694 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKT 450 ++ + AF EDI+ T + F TP++ V+ EQR K + L Y A Sbjct: 695 DEGLLAAFEAEEDIHQRTATEIFRTPLEDVTPEQRRSAKAINFGLIYGMSAHGLGRQLGI 754 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 + ++++ Q + + + S ++Q Sbjct: 755 NRTAAQHYIERYFQRYPGVKAYMENICQQARQKGYVETLFGRRLYLPEIHSRQTQRRNQA 814 Query: 490 PEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSIS 539 A+ + G+A +++K+A + ++Q+ +L A E + Sbjct: 815 ERTAINAPMQGSAADIIKRAMIHADRWLQEQKANARMIMQVHDELVFEVAEDKLEATIRA 874 Query: 540 AR 541 R Sbjct: 875 IR 876 >gi|319781431|ref|YP_004140907.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167319|gb|ADV10857.1| DNA polymerase I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 997 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 103/543 (18%), Positives = 182/543 (33%), Gaps = 96/543 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D +V+ +A N ++ ++ + G+D+ G P LA Sbjct: 470 LKPLLEDRSVLKIAQNLKYDLVIMSRY-GVDVAPFDDTMLISYVLDAGTPHGHGMDALAE 528 Query: 117 NFSEH---LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + H K G K S+ D +A + D + T L Sbjct: 529 KWLGHTPLQLKDVTGS------GKSSVGFDQVDIDKATA---------HAAEDADVTLRL 573 Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ER L + + RG +D ++ +L +AQ +L+E+ Sbjct: 574 WLVLKPRLAAKGLVSVYERLERPLVPVLARMEQRGISVDRQILSRLSGELAQGAARLEEE 633 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282 I +L I + L LF G+ ++ T + S + LA + L R Sbjct: 634 IYQLIGERI-NIGSPKQLGDILFGRMGLPGGSKTK-TGQWSTSAQLLEDLAAEGHELPRK 691 Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L + D + T A+ TGR S QN+P + Sbjct: 692 IVDWRQLTKLKSTYTDALPGFIHPDTKRVHTSYALAATTTGRLSSSDPNLQNIPVRT--- 748 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ I +LV AD + IE RVLA +A Sbjct: 749 ---------------------AEGRKIRTAFITDKSHRLVSADYSQIELRVLAHVAEIPQ 787 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AFA+G DI+ T ++ FN P++ + E R K + + Y G A Sbjct: 788 LRQAFADGADIHAITASEMFNVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIPRE 847 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 G ++++ + + + + S + ++ Sbjct: 848 EAGNYIKKYFERFPGIRDYIEETKAYAREHGFVETIFGRRIHYPDIRSSNPSLRAFNERA 907 Query: 493 AVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 ++ +L GTA +++++A + +LQ+ +L E R Sbjct: 908 SINARLQGTAADIIRRAMIRMEEALERAGLSARMLLQVHDELIFETVEAEVEATIPVVRH 967 Query: 543 VAN 545 V Sbjct: 968 VME 970 >gi|237814595|ref|ZP_04593593.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260755980|ref|ZP_05868328.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260759204|ref|ZP_05871552.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260760926|ref|ZP_05873269.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260885001|ref|ZP_05896615.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|237789432|gb|EEP63642.1| DNA polymerase I [Brucella abortus str. 2308 A] gi|260669522|gb|EEX56462.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|260671358|gb|EEX58179.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|260676088|gb|EEX62909.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|260874529|gb|EEX81598.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] Length = 994 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 407 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 456 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 457 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 513 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 514 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 558 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 559 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 618 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 619 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 676 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 677 DLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 736 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 737 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 772 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 773 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 832 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 833 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRA 892 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 893 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 952 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 953 NEVEKTIPVVRRVME 967 >gi|254694920|ref|ZP_05156748.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|261215255|ref|ZP_05929536.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] gi|260916862|gb|EEX83723.1| DNA polymerase I [Brucella abortus bv. 3 str. Tulya] Length = 978 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 108/615 (17%), Positives = 200/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S A L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMAPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|217977571|ref|YP_002361718.1| DNA polymerase I [Methylocella silvestris BL2] gi|217502947|gb|ACK50356.1| DNA polymerase I [Methylocella silvestris BL2] Length = 1013 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 110/632 (17%), Positives = 195/632 (30%), Gaps = 119/632 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLC------AYA------------WDDEPVKLW 45 + ID ET S P+ AE ++LC AY + + Sbjct: 424 IAIDTETSSLDPMQ-------AELVGLSLCLAPGRAAYVPLRHRGEGAGDLFGGADLVPG 476 Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + + L L V+ +A N+ F++++ + GI + G Sbjct: 477 QLDSDETL-ARLKPMLEAPDVLKIAQNAKFDQLVLAQ-RGIRLAPVDDTLLLSYVLDAGR 534 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + F + F I +A EY Sbjct: 535 TDHGMDVLAEKYFGHRPIQFGAVAGSGRTF----IGFARVALDKAT---------EYSAE 581 Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 D + T L++ L P ER + + RG ID ++ +L AQ Sbjct: 582 DADVTLRLWRVLKPRLAAERMSAVYETLERPMVETLARMERRGVSIDRAILSRLSGEFAQ 641 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + +L+ I +L + L LF G+ + T + + LA+ Sbjct: 642 DMARLEAVIFELAGESF-NLGSPKQLGDILFGKMGLAGARKT-ATGAWSTAAGVLDDLAE 699 Query: 276 D------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 IL+ S + L V+ GR+ + A+ TGR S Q Sbjct: 700 QGVPLAARILDWRQLSKLKSTYTDALPSYVNPETGRVHTSYAL-AATTTGRLSSSEPNLQ 758 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P A +R IA G+KL+ AD + IE R+ Sbjct: 759 NIP------------------------VRNEAGRKIRKAFIAPPGRKLISADYSQIELRL 794 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 LA IA AFA DI+ T ++ F P++ + E R K + + Y G Sbjct: 795 LAHIADISQLRAAFAENLDIHAMTASEMFGVPVEGMPPEVRRRAKAINFGIIYGISAFGL 854 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF----- 492 A G ++++ + + D + + + YP Sbjct: 855 ANQLAIPREEAGAYIKRYFERFPGIRAYMDATKQFARENGYVTTIFGRKCHYPRITASNP 914 Query: 493 ---------AVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQ 533 A+ + G+A +++++A Q +LQ+ +L Sbjct: 915 SERAFNERAAINAPIQGSAADIIRRAMVRMDEALEKAGLSAQMLLQVHDELVFEAPDEEI 974 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + R+V + + + ++ Sbjct: 975 DATIDVVRKVMVDAPHPFLQLAVPLQVDAKAA 1006 >gi|58583863|ref|YP_202879.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625661|ref|YP_453033.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|58428457|gb|AAW77494.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369601|dbj|BAE70759.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 933 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 99/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE +A + + PV+L DRT + L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTH---ALAQLAPLLT 415 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V V + ++ + ++ +G ++ Sbjct: 416 DPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K E+ C P+ + + D + T L L P Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLDDATRY------AAEDADITLRLHHVLGPKLA 522 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + I G +D + + +++ + +L Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 582 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + V + S + + +A L R+ + K Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPST-NEDALEAIADQHELPRVILEYRGLSK 640 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E + GR+ + GA+ TGR S QN+P + Sbjct: 641 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G+KL+ D + IE R++A ++G+ + AFA+G Sbjct: 691 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASG 735 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 736 TDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + F + + ++ + A+ + G Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K+A + +LQ+ +L Sbjct: 856 TAADIIKRAMVKVDGWIADHAQRAKMILQVHDEL 889 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M ++L VHDE+V E + + + + M Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 910 >gi|254718343|ref|ZP_05180154.1| DNA polymerase I [Brucella sp. 83/13] gi|306839566|ref|ZP_07472372.1| DNA polymerase I [Brucella sp. NF 2653] gi|306405352|gb|EFM61625.1| DNA polymerase I [Brucella sp. NF 2653] Length = 978 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 197/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDAALAALKHVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMNPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E R V Sbjct: 937 NEVEKTIPVVRHVME 951 >gi|159184162|ref|NP_353146.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] gi|159139496|gb|AAK85931.2| DNA polymerase I [Agrobacterium tumefaciens str. C58] Length = 998 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 95/503 (18%), Positives = 171/503 (33%), Gaps = 81/503 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L DE V+ VA N ++ +L K+ G+ + S G + + Sbjct: 470 ERLKDLLEDEAVLKVAQNLKYDYLLMKRH-GVVMRSFDDTMLISYVLEAGKTTHGMDTLS 528 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 ++ K SI + +A Y D + T L+ Sbjct: 529 ERWLGHTPIAYKDVTGS----GKSSITFDFVNIDKATA---------YAAEDADVTLRLW 575 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P ER L + + +RG +D ++ +L +AQ+ +E+I Sbjct: 576 MALKPRLVSERLTKVYERLERPLVPVLAHMEERGITVDRQILSRLSGELAQKAASFEEEI 635 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283 +L + L LF G+ ++ T + S + LA + L R Sbjct: 636 YELAGERF-NIGSPKQLGDILFGRMGLPGGSKTK-TGQWSTSAQVLEDLAAEGAELPRKI 693 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + + + T ++ TGR S QN+P + Sbjct: 694 VDWRQLTKLKSTYTDALPSYIHPETKRVHTSYALASTTTGRLSSSEPNLQNIPVRT---- 749 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 750 --------------------AEGRKIRTAFISTPGHKLLSADYSQIELRVLAHVADIPQL 789 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 AF NG DI+ T ++ F P++ + E R K + + Y G A S Sbjct: 790 RNAFENGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLSIARSE 849 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------------A 493 G ++++ + + + +A + + YPE A Sbjct: 850 AGDYIKKYFERFPGIRDYMEATKAFARENGYVETIFGRRAHYPEIRSSNPSVKAFNERAA 909 Query: 494 VKDKLIGTACELVKKAWRAKHQG 516 + + G+A +++++A Sbjct: 910 INAPIQGSAADIIRRAMIRIEPA 932 >gi|218516686|ref|ZP_03513526.1| DNA polymerase I [Rhizobium etli 8C-3] Length = 732 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 100/531 (18%), Positives = 186/531 (35%), Gaps = 97/531 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE+V+ VA N ++ +L K+ I +K + T +++ + L+ Sbjct: 204 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETKSFDDTMLISYVLDAGTGAHGMDPLS 260 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G + ++ D RA H Y D + T Sbjct: 261 EKFLGHTPIPYKDVAGS------GRANVTFDLVDIDRATH---------YAAEDADVTLR 305 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 306 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 365 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S S + LA L R Sbjct: 366 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 423 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V + + T ++ TGR S QN+P + Sbjct: 424 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 481 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 482 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 519 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 520 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 579 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 580 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 639 Query: 492 FAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 A+ + G+A +++++A +++ + + V++ Sbjct: 640 AAINAPIQGSAADVIRRAMIKIEPALAEAGLAERVRMLLQVHDELIFEVED 690 >gi|241763714|ref|ZP_04761762.1| DNA polymerase I [Acidovorax delafieldii 2AN] gi|241367019|gb|EER61404.1| DNA polymerase I [Acidovorax delafieldii 2AN] Length = 926 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 105/598 (17%), Positives = 190/598 (31%), Gaps = 114/598 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDL------ 57 +D ET S + A I +++ P L Sbjct: 353 ALDTETTSLDEMR----------AEIVGISFSVQPGEAAYIPLAHTGPDAPEQLPLGEVL 402 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNAC 113 +L D + + ++R +F DI + + T + + + A Sbjct: 403 ARLKPWLEDARYPKLGQHVKYDRHVFANH---DIDVRGYVHDTMLQSYVLEVHKPHGLAS 459 Query: 114 LALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LA G+ I+ C P+ + A+ D + T Sbjct: 460 LAER--------HTGRTGISYEDLCGKGAHQIPFAQVPVDKAAAYS------CEDSDQTL 505 Query: 172 ELFKRLIPLS---DGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLD 221 ++ L PL D R ++ L+ I G ID + + + Q +L+ Sbjct: 506 DVHLALWPLLQADDKLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRILQLE 565 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + ++ S L F G+ +V + T + +LA+D L Sbjct: 566 TEAYEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPA 623 Query: 282 LASSGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++ KL + L++ A+ GR+ + TGR S QN+P + Sbjct: 624 KLLEHRSLTKLKGTYTDKLAQLALPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT- 681 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR +A G + AD + IE R++A I+G+ Sbjct: 682 -----------------------AEGRRVREAFVAPPGCVIASADYSQIELRIMAHISGD 718 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + AF G D++ T A+ F +D+V+ EQR KV+ L Y AK Sbjct: 719 HALLHAFHAGLDVHRATAAEVFGVALDQVTSEQRRYAKVINFGLIYGMSSFGLAKNLGIE 778 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YP 490 + ++ Q + D +A++ + Sbjct: 779 TKAAAAYIDRYFQRYPGVKQYMDETKAQAKARGYVETVFGRRLYLPEINSPNGPRRAGAE 838 Query: 491 EFAVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A+ + GTA +L+K A A H+ +++ + + + EG R Sbjct: 839 RAAINAPMQGTAADLIKLAMVAVQKELDAHKPGIKMIMQVHDELVFELPEGEVDWLRG 896 >gi|307823067|ref|ZP_07653297.1| DNA polymerase I [Methylobacter tundripaludum SV96] gi|307735842|gb|EFO06689.1| DNA polymerase I [Methylobacter tundripaludum SV96] Length = 930 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 103/598 (17%), Positives = 198/598 (33%), Gaps = 110/598 (18%) Query: 7 DIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V +A A+ + P +L ++S + L L Sbjct: 357 DTETTSLDYSKAQIVGVSFAVTPGKAAYVPLAHDYPGVPDQL----DRSEILEKLRPLLE 412 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLALNF 118 + + N ++ + GI + T + + ++ A L Sbjct: 413 NPRKAKLGQNLKYDTHVLANH-GIALRGIA-HDTMLESYVLNSTATKHNMDDLAKEYLGV 470 Query: 119 SEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-- 175 + GK F + SID Y D + T +L + Sbjct: 471 ETIHYEDVAGKGAKQIGFQEVSIDQAA----------------PYAAEDADITLQLHQVL 514 Query: 176 --------RLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RL+ L SD E L + I + G ID ++ + ++ + L++ Sbjct: 515 NAKLAQHPRLLELYSDMEVPLISVLARIENNGVLIDAAMLAQQSLELSSQIISLEQHAHD 574 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + ++ L+ + ++ + S S + +LA D L +L Sbjct: 575 LAGQTF-NLGSPKQIQDILYDQQKLPVLKKTPKGQPST-EESVLQELALDYPLPKLILEY 632 Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ KL + L + + GR+ + A+ TGR S QN+P + Sbjct: 633 RSLSKLKSTYTDKLPQQIDGQTGRIHTSYHQAIAA-TGRLSSSDPNLQNIPIRS------ 685 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA GKK+V AD + IE R++A ++ ++ +K Sbjct: 686 ------------------EEGRKIRQAFIAPEGKKIVAADYSQIELRIMAHLSADEGLLK 727 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AF+ +D++ T A+ F ++V+ + R K + L Y A+ S Sbjct: 728 AFSEEQDVHRATAAEVFGVAPEQVTTDLRRSAKAINFGLIYGMSSFGLAQQLGLSRSQAQ 787 Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495 + + + D + S + + A+ Sbjct: 788 SYIDLYFARYPGVKNYMDRIREQAREQGYIETLFGRRLYLPEINSRNAARRQYAERTAIN 847 Query: 496 DKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +++K+A A Q ++Q+ +L A + + R + Sbjct: 848 APMQGTAADIIKRAMIAADQWLYKEQPDAKMIMQVHDELVFEIAEEHVDDCAAKIRSI 905 >gi|254492177|ref|ZP_05105351.1| DNA polymerase I superfamily [Methylophaga thiooxidans DMS010] gi|224462502|gb|EEF78777.1| DNA polymerase I superfamily [Methylophaga thiooxydans DMS010] Length = 894 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 106/581 (18%), Positives = 200/581 (34%), Gaps = 113/581 (19%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V A +A + + P +L + A+ +DL L Sbjct: 320 DTETTSLDYLEARIVGVSFAVKAGEAAYLPLNHDYPGAPDQL----DFDAVMADLKPLLE 375 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPS-SLKNACLALNFSE 120 D T + V N ++R + L DI + T + + + LA + + Sbjct: 376 DPTKLKVGQNLKYDRHVL---LNHDINLQGIAHDTMLESYVLDSTATRHDMDSLAKKYLD 432 Query: 121 HLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 T + GK F + + + Y D + T +L + Sbjct: 433 RDTIHFEDIAGKGKKQLTFNQIGL----------------EEAAPYAAEDADITLQLHET 476 Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P S+ E L + T+ G ID+ ++ + +A + +L++ Sbjct: 477 LWPRIQAIPSLVKVYSELEMPLLPVLNTLERNGVNIDIWMLQSQSDNMAHQIAELEKQAH 536 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLAS 284 + + L+ L+ + + + S + LA D L ++ Sbjct: 537 ESAGQTF-NLGSPKQLQEILYEKQELPVKKKTPKGQPSTAEE-VLQGLADDGYELPQIIM 594 Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L V+ GR+ + + TGR S QN+P + + Sbjct: 595 QYRGLSKLKSTYTDKLPLQVNKSSGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRSEN-- 651 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +ASNG L+ AD + IE R++A ++G++ Sbjct: 652 ----------------------GRRIREAFVASNGYTLLAADYSQIELRIMAHLSGDESL 689 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454 +KAFA GEDI+ T ++ F+ ++ VS +QR K + L Y A K Sbjct: 690 LKAFAAGEDIHRHTASEIFDIALEDVSSDQRRSAKAINFGLIYGMSAHGLSKQLGIERHQ 749 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFA 493 +Q + + D + ++ + A Sbjct: 750 AADYMQTYFDRYPGVRQYMDNTREQAKEQGYVETIFGRRLYLPEINSSNGMRRQYAERTA 809 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + + G+A +++K+A A H + ++Q+ +L Sbjct: 810 INAPMQGSAADIIKRAMIAIHSWLSEADTGIRMIMQVHDEL 850 >gi|62289104|ref|YP_220897.1| DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82699042|ref|YP_413616.1| DNA polymerase I [Brucella melitensis biovar Abortus 2308] gi|189023378|ref|YP_001934146.1| DNA polymerase I [Brucella abortus S19] gi|254690432|ref|ZP_05153686.1| DNA polymerase I [Brucella abortus bv. 6 str. 870] gi|254696548|ref|ZP_05158376.1| DNA polymerase I [Brucella abortus bv. 2 str. 86/8/59] gi|254731463|ref|ZP_05190041.1| DNA polymerase I [Brucella abortus bv. 4 str. 292] gi|256258684|ref|ZP_05464220.1| DNA polymerase I [Brucella abortus bv. 9 str. C68] gi|260546401|ref|ZP_05822141.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297247520|ref|ZP_06931238.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] gi|62195236|gb|AAX73536.1| PolA, DNA polymerase I [Brucella abortus bv. 1 str. 9-941] gi|82615143|emb|CAJ10076.1| 5'3'-Exonuclease N-and I-domain:DNA-directed DNA polymerase:DNA polymerase, family A:5'-3' exonuclease:3'-5' exonuclease:Hel [Brucella melitensis biovar Abortus 2308] gi|189018950|gb|ACD71672.1| DNA polymerase I [Brucella abortus S19] gi|260096508|gb|EEW80384.1| DNA polymerase I [Brucella abortus NCTC 8038] gi|297174689|gb|EFH34036.1| DNA polymerase I [Brucella abortus bv. 5 str. B3196] Length = 978 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLLRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRTHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|166710273|ref|ZP_02241480.1| DNA polymerase I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 933 Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats. Identities = 99/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE +A + + PV+L DRT + L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTH---ALAQLAPLLT 415 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V V + ++ + ++ +G ++ Sbjct: 416 DPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K E+ C P+ + + D + T L L P Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLDDATRY------AAEDADITLRLHHVLGPKLA 522 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + I G +D + + +++ + +L Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 582 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + V + S + + +A L R+ + K Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLTK 640 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E + GR+ + GA+ TGR S QN+P + Sbjct: 641 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G+KL+ D + IE R++A ++G+ + AFA+G Sbjct: 691 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASG 735 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 736 TDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + F + + ++ + A+ + G Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K+A + +LQ+ +L Sbjct: 856 TAADIIKRAMVKVDGWIADHAQRAKMILQVHDEL 889 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M ++L VHDE+V E + + + + M Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 910 >gi|188574814|ref|YP_001911743.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] gi|188519266|gb|ACD57211.1| DNA polymerase I [Xanthomonas oryzae pv. oryzae PXO99A] Length = 933 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 99/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE +A + + PV+L DRT + L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTH---ALAQLAPLLT 415 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V V + ++ + ++ +G ++ Sbjct: 416 DPAVRKVGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K E+ C P+ + + D + T L L P Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLDDATRY------AAEDADITLRLHHVLGPKLA 522 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + I G +D + + +++ + +L Sbjct: 523 AEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 582 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + V + S + + +A L R+ + K Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPST-NEDALEAIADQHELPRVILEYRGLSK 640 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E + GR+ + GA+ TGR S QN+P + Sbjct: 641 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G+KL+ D + IE R++A ++G+ + AFA+G Sbjct: 691 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFASG 735 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 736 TDVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + F + + ++ + A+ + G Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K+A + +LQ+ +L Sbjct: 856 TAADIIKRAMVKVDGWIADHAQRAKMILQVHDEL 889 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M ++L VHDE+V E + + + + M Sbjct: 861 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 910 >gi|218662905|ref|ZP_03518835.1| DNA polymerase I [Rhizobium etli IE4771] Length = 564 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 100/508 (19%), Positives = 180/508 (35%), Gaps = 89/508 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L DE+V+ VA N ++ +L K+ I ++ + T +++ + L+ Sbjct: 36 LKALLEDESVLKVAQNLKYDYLLLKRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 92 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G K ++ D RA H Y D + T Sbjct: 93 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 137 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 138 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGVTVDRQILSRLSGELAQGAARLED 197 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S S + LA L R Sbjct: 198 EIYTLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSASVLEDLAAAGFELPR 255 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V + + T ++ TGR S QN+P + Sbjct: 256 KIVDWRQLTKLKSTYTDALPGYVHPETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 313 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 314 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 351 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 352 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 411 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 412 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 471 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + G+A +++++A + Q Sbjct: 472 AAINAPIQGSAADVIRRAMIKMEPALAQ 499 >gi|222111840|ref|YP_002554104.1| DNA polymerase i [Acidovorax ebreus TPSY] gi|221731284|gb|ACM34104.1| DNA polymerase I [Acidovorax ebreus TPSY] Length = 922 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 106/598 (17%), Positives = 188/598 (31%), Gaps = 114/598 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDLLQY--- 60 +D ET S L A I +++ + P L Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398 Query: 61 ------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + + ++R +F GI + T + + + L Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLTSL 456 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A G+ I+ C P+ + A+ D + T + Sbjct: 457 AER--------HTGRTGISYEDLCGKGAKQIPFAQVPVDKAAAYS------CEDSDQTLD 502 Query: 173 LFKRLIPLS---DGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + L P D R ++ L+ I G ID + + Q +L++ Sbjct: 503 VHRVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQ 562 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + + + L F G+ +V + T + +LA+D L Sbjct: 563 EAYAIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 620 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ KL + LS GR+ + TGR S QN+P + Sbjct: 621 LLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYA-QAVAVTGRLSSNEPNLQNIPIRT-- 677 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + AD + IE R++A I+G++ Sbjct: 678 ----------------------PEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDE 715 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + AF G D++ T A+ F +D+VS EQR KV+ L Y AK Sbjct: 716 ALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIET 775 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + ++ Q + + +A++ + + Sbjct: 776 KAAAAYIDRYFQRYPGVKQYMEETKAQAKARGYVETVFGRRLYLPEINSPNGPRRGAAER 835 Query: 492 FAVKDKLIGTACELVKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A+ + GTA +L+KKA A+ VL + + + + EG RR Sbjct: 836 AAINAPMQGTAADLIKKAMVAVQGELDARKPEVLMI-MQVHDELVFELPEGEVDWLRR 892 >gi|262281030|ref|ZP_06058813.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] gi|262257930|gb|EEY76665.1| DNA polymerase I [Acinetobacter calcoaceticus RUH2202] Length = 923 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 105/595 (17%), Positives = 200/595 (33%), Gaps = 116/595 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L + Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAQDAYYVPLAHTYENAPQQL----NRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W ++LA N + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDTMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + Y Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVATH----------------YAAE 499 Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214 D T L++ +L P + E L+ ++ + + G R+D + L A Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDNLSVEFA 559 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + L+ +++ D + + LF GI + T + S S + ++ Sbjct: 560 KTMEGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617 Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L G A LK + L E +D T + TGR S QN+P Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G+ L+ AD + IE R++A Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 + +D + AF +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 714 FSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 ++Q+ Q + ++ ++ ++ Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 A+ L G+A +++K A + + +L + + V + + Sbjct: 834 KAAERAAINAPLQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDQNIA 888 >gi|325274003|ref|ZP_08140161.1| DNA polymerase I [Pseudomonas sp. TJI-51] gi|324100856|gb|EGB98544.1| DNA polymerase I [Pseudomonas sp. TJI-51] Length = 915 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 96/573 (16%), Positives = 185/573 (32%), Gaps = 105/573 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ ++ P +L ++ A+ L L D V N+ ++ + Sbjct: 364 AAYVPLAHDYEGAPAQL----DRDAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAI 419 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 T + + + LA + +H T E GK F + +D Sbjct: 420 AMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQIDLDK 479 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 G Y D + T L L L D E L + Sbjct: 480 A----------------GPYAAEDADITLRLHHALQARLAQTPSLQPVLMDIEMPLVPVL 523 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D L+ + ++ +L+ +L + L L+ G+ Sbjct: 524 AKIERQGALVDAALLHVQSGELGEKMAELERRAYELAGEEF-NLGSPKQLGAILYDKLGM 582 Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 ++ + S + + + +LA+ L + ++ KL + L ++ GR Sbjct: 583 PVLSKTAKGQPST-AEAVLDELAELGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGR 641 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + Q + TGR S QN+P + + Sbjct: 642 IHTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRI 676 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 677 RQAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALENV 736 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475 + +QR K + L Y AK + ++ + + Sbjct: 737 TVDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRTQA 796 Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++K+A Sbjct: 797 AEQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVNVDNWLSE 856 Query: 515 -----QGVLQLWKDLTEGFACVVQEGGSISARR 542 + +LQ+ +L + E R+ Sbjct: 857 SGLDARVILQVHDELVLEVREDLVEQVKDEIRQ 889 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 16/103 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + RRL D+ L R +Q + DI+ M N Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVNVD 851 Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 ++L VHDE+V E + V + M+K Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVEQVKDEIRQHMSKA 894 >gi|300021892|ref|YP_003754503.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] gi|299523713|gb|ADJ22182.1| DNA polymerase I [Hyphomicrobium denitrificans ATCC 51888] Length = 995 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 99/546 (18%), Positives = 181/546 (33%), Gaps = 96/546 (17%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D +V+ + N ++ ++ K+ I + T +L+ L + Sbjct: 462 LEDPSVLKIGQNIKYDALVMKR---RGIEIVSFDDTMLLSY--ALDGGRGQHGMDALAER 516 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIP 179 HL M F + +P + EY D + T L+ L P Sbjct: 517 HLGHM------CMTFAQAMGHAPGAKKSDKTFAAMPLDKATEYAAEDADVTMRLWMALKP 570 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ER L + + G ++D D++ +L AQ +L+E+I L Sbjct: 571 RLAAERMATVYETLERPLVPVIVGMEHAGIKVDRDILSRLSHAFAQRTVRLEEEINGLVG 630 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLI--- 278 + L LF + ++ L + ++ I A+ LI Sbjct: 631 HKF-NLGSPKQLGELLFDRLKLPGGKKTKSGQWETRANLLDDLAANEEIDGDARRLINTM 689 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + + L ++ GR+ + GA+ TGR + QN+P + + Sbjct: 690 LEWRQMTKLKSTYTDALPAYINAETGRIHTSYAL-GATTTGRLASSDPNLQNIPIRTK-- 746 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ IA G +L+ AD + IE RVLA +A Sbjct: 747 ----------------------EGREIRTAFIADKGMQLISADYSQIELRVLAHVADIPQ 784 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 KAFA G DI+ T ++ F P+ + E R K + + Y G A Sbjct: 785 LKKAFAEGLDIHAMTASEMFGVPVKDMPSEVRRRAKAINFGIIYGISAFGLANQLSISRE 844 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++ + Q + D + + + + M+ Sbjct: 845 EASDYIKTYFQRFPGIRDYMDATKKQVHAHGHVETIFGRRIHYPEINTKNPSMRGFLERA 904 Query: 493 AVKDKLIGTACELVKKAWR-----------AKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + G+A +++++A + + +LQ+ +L A +AR Sbjct: 905 AINAPIQGSAADIIRRAMIRMPAALVDAKLSSARMLLQVHDELVFEVADNEASALITTAR 964 Query: 542 RVANVP 547 RV Sbjct: 965 RVMETA 970 >gi|237747176|ref|ZP_04577656.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] gi|229378527|gb|EEO28618.1| DNA polymerase I [Oxalobacter formigenes HOxBLS] Length = 913 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 96/566 (16%), Positives = 184/566 (32%), Gaps = 105/566 (18%) Query: 5 FIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 +D ET S + K G AY A+ P+++ + + Sbjct: 339 SLDTETTSLDSMTARLVGISLSVKPGFAAY------IPLAHH----PIEVAKQLPLDHVL 388 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNAC 113 L +L + V N ++ +F I + T + + Sbjct: 389 KKLKSWLENPAKKKVGQNLKYDSHIFANY---HIHLQGIAHDTLLESYVLESHRRHDMDS 445 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ ++ E C +D + + D + T +L Sbjct: 446 LSERLLDYKPISYE------EICGKGASQIGFDQIELDCATRY------AAEDADITFQL 493 Query: 174 FKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + P + E + L+ Q + G ID DL+L +A + +L++ Sbjct: 494 HENMWPRIEKNEGLRFIYEKIEIPVSLVLQKMERNGVLIDPDLLLGQSSELALKIDELEK 553 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + + + L LF G+ LV + S S + +LA D L ++ Sbjct: 554 KAYSVAEQSF-NLNSPKQLAEILFDKLGLPLVKKTPSGAPST-SEEVLEKLALDYPLPKI 611 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L ++ GR+ + TGR + QN+P Sbjct: 612 ILDFRGMAKLKSTYTDKLPRMINPETGRVHTNYA-QAVAVTGRLASNDPNLQNIP----- 665 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G +V AD + IE R++A ++ + Sbjct: 666 -------------------VKTEEGRRIREAFIAPAGCYIVSADYSQIELRIMAHLSDDP 706 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 +KAF G+D++ T ++ F+ +V+ EQR KV+ L Y A Sbjct: 707 GLLKAFREGQDVHKATASEIFDIAPLEVTPEQRRYAKVINFGLIYGMSAFGVASNLGISR 766 Query: 453 SHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPE 491 + + ++ + + + D E LW+ + Sbjct: 767 TDAKNYIDRYFRRYPGVAEYMDAIRQTAREQGYVETVFGRRLWLPEINSPNGPRRQAAER 826 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++K + A + + Sbjct: 827 AAINAPMQGTAADIIKLSMIAVNDWI 852 Score = 46.7 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 10/74 (13%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655 Q + DI+ M + +++ VHDE+V E PD V L LM + Sbjct: 834 QGTAADIIKLSMIAVNDWIENEQLESKLIMQVHDELVLEVPDKELERVRKRLPELMGQVA 893 Query: 656 SWAKGLPLKAE-GY 668 S +PL A+ G+ Sbjct: 894 S--LKVPLIADVGF 905 >gi|315178730|gb|ADT85644.1| DNA polymerase I [Vibrio furnissii NCTC 11218] Length = 932 Score = 278 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 109/582 (18%), Positives = 198/582 (34%), Gaps = 95/582 (16%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQ 59 D ET S + VGV +A AE +A A+ + D P +L W + + Sbjct: 358 DTETDSLDYMVANLVGVSFAVAEGEAAYVPVAHDYLDAPQQLDRDWALAQLKPI------ 411 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR-TNGLPSSLKNACLALN 117 L D V N ++ + + DI + T + + N + LAL Sbjct: 412 -LEDAQQAKVGQNLKYDASILARY---DINMQGIAHDTMLASYVYNSVGGKHDMDSLALR 467 Query: 118 FSEHLTKMEE---GKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F +H E GK F + ++ PY A+ + Sbjct: 468 FMQHSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLS 527 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +++ D E L + I G I+ L+ + IAQ +L++ + Sbjct: 528 VYR------DIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDIAGQEF 581 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 S L+ F + ++ + S + + +LA D L + + KL Sbjct: 582 NLS-SPKQLQTIFFDQMKLPVIKKTPSGTPST-NEEVLQELALDYPLPAVILEYRGLAKL 639 Query: 293 -----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + ++ GR+ + + TGR S QN+P + Sbjct: 640 KSTYTDKLPKMINPTTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR------------- 685 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R +A +G K++ D + IE R++A ++G+ ++AF G+ Sbjct: 686 -----------NEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGK 734 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462 DI+ T A+ ID+V+ EQR K + L Y AK + + Sbjct: 735 DIHAATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDTY 794 Query: 463 SQNVKST-STFEDWEQAESHHLWM--------------------QDQYPEFAVKDKLIGT 501 + ED + ++ + A+ + GT Sbjct: 795 FERYPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAPMQGT 854 Query: 502 ACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEGG 536 A +++KKA A+ G ++L + + V+E Sbjct: 855 AADIIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESA 896 >gi|224023510|ref|ZP_03641876.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] gi|224016732|gb|EEF74744.1| hypothetical protein BACCOPRO_00212 [Bacteroides coprophilus DSM 18228] Length = 932 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 103/589 (17%), Positives = 194/589 (32%), Gaps = 104/589 (17%) Query: 4 LFIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 L +D ET S P+ VG+ ++YAE + PV DR+E + Sbjct: 362 LSLDTETTSTDPIRAELVGMSFSYAENQAFYV--------PVP-ADRSEAQKIVDRFRPV 412 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LNFS 119 + +M V N ++ ++ G+ + + T V LA + + Sbjct: 413 FENREIMKVGQNIKYDMLVLANY-GVQLQGPLF-DTMVAHYVLQPELRHNMDYLAEIYLN 470 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 +EE + D PP EY D + T +L +L Sbjct: 471 YQTIHIEELIGPKGKNQGNMRDLPPASV------------YEYACEDADVTLKLKNKLEK 518 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + + G RID + + + K+++E++ +L Sbjct: 519 ELDENNVRKLFEEIEMPLIPVLAYMERNGVRIDTEALKETSRHFTLRMKQIEEEVYQLAG 578 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + LF I T + + S + L + + Sbjct: 579 TEFNIA-SPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEVVGKILEHRGL 637 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 638 KKLLGTYIDALPQLINPETGRIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------- 689 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I +G AD + IE R++A ++G+ I+AF Sbjct: 690 -----------------GKEIRKAFIPDDGCIFFSADYSQIELRIMAHLSGDPHMIEAFQ 732 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G+DI+ T +K + P+++V++EQR+ K + Y G A+ + Sbjct: 733 KGQDIHAATASKIYKVPLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAKELI 792 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + +N + D S + ++ A+ + Sbjct: 793 DGYFENYPHVKEYMDESIRIARERGYIETIFKRKRYLPDINSRNAVVRGYAERNAINAPI 852 Query: 499 IGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537 G+A +++K A R + + +LQ+ +L QE Sbjct: 853 QGSAADIIKVAMVRIYQRFLKERIQSKMILQVHDELNFSVLPEEQEKVK 901 >gi|215919261|ref|NP_820774.2| DNA polymerase I [Coxiella burnetii RSA 493] gi|206584145|gb|AAO91288.2| DNA polymerase I [Coxiella burnetii RSA 493] Length = 902 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 110/609 (18%), Positives = 206/609 (33%), Gaps = 110/609 (18%) Query: 1 MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49 M KL D ET + VGV ++A + + P +L + Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLGHDYTGAPAQL----D 371 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107 + + +L L D + N ++ + K G+ I +K + ++LA N + Sbjct: 372 KEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 LAL + G+ ++ + NHV Y D Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ + Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMKMEMRGVLVDTAMLQAQSIELGGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L++ KL S L+ L+ + + + G S + + + LA D Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L ++ ++ KL T L V R T + TGR S QN+P Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G ++V AD + +E R++A Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444 I+ + IKAF DI+ T A+ F +++V+ EQR K + L Y Sbjct: 691 ISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750 Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493 + + +A + ++ Q ++ + + + E +++ D + Sbjct: 751 LGIGRDLAKEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810 Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536 + + GTA +++K A W K+ ++Q+ +L A E Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKV 870 Query: 537 SISARRVAN 545 ++ Sbjct: 871 IPQIKKAME 879 >gi|73540576|ref|YP_295096.1| DNA polymerase I [Ralstonia eutropha JMP134] gi|72117989|gb|AAZ60252.1| DNA polymerase I [Ralstonia eutropha JMP134] Length = 941 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 93/516 (18%), Positives = 168/516 (32%), Gaps = 93/516 (18%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D++ + N ++ +F + T + + + LA Sbjct: 423 LEDDSKPKLGQNIKYDIHVFANHGVTLCGVAQ--DTMLESYVLASHRNHGMDSLAERLLN 480 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 T E C +D EY D + T L +++ P Sbjct: 481 LKTITYE------EVCGKGASQIGFDQID------LARATEYAAEDADVTLRLHRKMFPQ 528 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E + ++ Q I G ID + + + Q L++ Sbjct: 529 VSAAAGLRRVYEEIEIPVSVVLQKIERNGVLIDAERLAAQSAELGQRMLSLEQAAYDAAG 588 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + LF + +V + S + +LA+D L +L + Sbjct: 589 QPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPST-DEEVLQKLAEDYPLPKLLLDYRGL 646 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ + A TGR + QN+P + Sbjct: 647 AKLKSTYTDKLPKMVNPNTGRVHTSYGQATAV-TGRLASTEPNLQNIPVRT--------- 696 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IAS G +V AD + IE R++A I+G++ ++AFA Sbjct: 697 ---------------EEGRRIREAFIASPGSVIVSADYSQIELRIMAHISGDENLLRAFA 741 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGEDI+ T ++ F + VS EQR KV+ L Y A + Sbjct: 742 NGEDIHRATASEIFGVDREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHYI 801 Query: 460 QQFSQNVKSTS-TFEDWEQAESHHLWM--------------------QDQYPEFAVKDKL 498 ++ + ED Q ++ + A+ + Sbjct: 802 DRYFMRYPGVAQYMEDTRQTAREQGYVETVFGRRLWLPDINGGSGPRRQAAERAAINAPM 861 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDL 524 GTA +L+K + A + + ++Q+ +L Sbjct: 862 QGTAADLIKLSMIAVQGWLERDKLQTRQIMQVHDEL 897 >gi|254443055|ref|ZP_05056531.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] gi|198257363|gb|EDY81671.1| DNA polymerase I domain protein [Verrucomicrobiae bacterium DG1235] Length = 596 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 155/687 (22%), Positives = 233/687 (33%), Gaps = 134/687 (19%) Query: 7 DIETRSPQ--PLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRD 63 D ET + + +GV AY +D W PS+ + Sbjct: 26 DTETYYSKGYDIRSLGVDAYVADPR-------FDCYLASFWGPHGNFVGHPSECPWEEFN 78 Query: 64 ETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + V ++HN+ F+R +F + + I + W ++ LA P +L A L Sbjct: 79 DCV-WISHNARFDRAVFFRMKELGIVPAHIMPREWHDSAALAVYLQAPRNLAGAAEKL-L 136 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF-KRL 177 E K I KG Y D EL+ Sbjct: 137 GEKPNK------AIRDAMKGIQGGLLCHDKAVLD---------YALDDARLACELWISHC 181 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 ER L L + G +D + + E + Q R D++ L Sbjct: 182 DKWPKKERLLSQLTIEQGEYGVHLDQKRIREGIETLTQVR---DDEATNLPWFPRLKPSS 238 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA----ILKLN 293 A I + + + I + + + S + L Sbjct: 239 PKAFAE-ACQQARIPIPNSTSEDDPQTQEW--IERYGERYPWLKHMSEWRKANRMLKVLE 295 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGC-VFQPQNLPRQERSEEILTQTIQALNRGET 352 T+ DG L L+++GA TGRW+G QN R Sbjct: 296 TMQSRCRRDGSLPFGLKYFGAIATGRWAGDAGLNFQNFNR-------------------- 335 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R C++A G KL++ADL+ IE RVLAWIAG+ NG IY Sbjct: 336 ----EAYYGVDPRKCLVARPGHKLIIADLSQIEPRVLAWIAGDRELFDKIRNGLPIYQAH 391 Query: 413 YAKAFNTPIDKVSKEQRAI---GKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 + N + KE + K + LGY G K F+++A GL Sbjct: 392 AETSMNWKGGDLKKENSNLYLLAKCRVIGLGYGAGCKTFQSLARGYGL------------ 439 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 ++ + +R + ++ LW+ + + Sbjct: 440 ---------------------------EMSIGEAKRTVDDFRKANPRIVSLWQAVEDS-- 470 Query: 530 CVVQEGGSISARRVANVPRLVMRRH-KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLM 588 MR H + LPS R + Y DV+ + T Sbjct: 471 ---------------------MRYHIGSTFFMYLPSLRSIRYFDVQEEEGLTATTERGGR 509 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 R YGGKLTEN+VQA +RD+ EG+ K G I+ TVHDE++ E P+ +V T+ Sbjct: 510 RLHWYGGKLTENLVQATARDVFAEGLLRIHKAGIRILWTVHDEVICEVPENSDITVETVT 569 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675 L+ + P W GLP+ AEG E Y K Sbjct: 570 DLLAQTPDWIPGLPVAAEGIETSCYTK 596 >gi|209693839|ref|YP_002261767.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] gi|208007790|emb|CAQ77912.1| DNA polymerase I [Aliivibrio salmonicida LFI1238] Length = 934 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 94/563 (16%), Positives = 183/563 (32%), Gaps = 103/563 (18%) Query: 33 CAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKK 82 +++ ++ + D L YL DET V N ++ + + Sbjct: 376 LSFSVEEGEAAYVPVAHDYLDAPEQLDRDWVLAQLKPYLEDETKAKVGQNLKYDASVLAR 435 Query: 83 TLGIDIPSKRWI-CTSVLAR-TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 DI K T + + N + LAL + +H T E I Sbjct: 436 Y---DIEMKGIKFDTMLESYVYNSVAGKHNMDSLALRYLQHNTISFE-----------EI 481 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWL 189 N + + Y D + T L L +D E L Sbjct: 482 AGKGKKQLTFNQIAL-EEAAPYAAEDADITLRLHNVLHAKLVTDEKLNAVFTDIELPLIS 540 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + +G ID L+ I Q +L+ ++ + L+ LF Sbjct: 541 VLSRMERKGVYIDDMLLSAQSLEIGQRLDELETASFEVAGQEF-NMNSPKQLQTILFEKM 599 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303 + ++ + S + + +LA + L +L + KL + L + ++ G Sbjct: 600 ELPVIKKTPSGAAST-NEEVLQELALEYELPKLILEYRGLAKLKSTYTDKLPKMINPSTG 658 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P + + Sbjct: 659 RVHTSY-HQAVTATGRLSSTDPNLQNIPIRNK------------------------EGRR 693 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R +A +G K++ D + IE R++A ++ + ++AF+ G+DI+ T A+ I++ Sbjct: 694 IRQAFVAPHGWKILAVDYSQIELRIMAHLSQDRALLEAFSAGKDIHAATAAEVKGVSIEE 753 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474 V+ E R K + L Y AK + + + + + Sbjct: 754 VTSEDRRRAKAINFGLIYGMSAFGLAKQIGISRGEAQDYMNVYFERYPGVMQYMEETRLL 813 Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------R 511 + + + + A+ + GTA +++KKA Sbjct: 814 ATEQGYVETLYGRRLYLPEINARNAIRRKAAERAAINAPMQGTAADIIKKAMILVDNWIE 873 Query: 512 AKHQGVLQLWKDLTEGFACVVQE 534 A+ G + L + + V+E Sbjct: 874 AEGTGRVNLLMQVHDELVFEVKE 896 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 11/75 (14%) Query: 603 QAISRDILCEGMKN----ATKNG---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M G ++++ VHDE+V E + ++ + +LM Sbjct: 854 QGTAADIIKKAMILVDNWIEAEGTGRVNLLMQVHDELVFEVKEDELEAITKQVTALMEAA 913 Query: 655 PSWAKGLPLKAE-GY 668 S +PL AE G+ Sbjct: 914 VS--LDVPLIAESGF 926 >gi|294851526|ref|ZP_06792199.1| DNA polymerase I [Brucella sp. NVSL 07-0026] gi|294820115|gb|EFG37114.1| DNA polymerase I [Brucella sp. NVSL 07-0026] Length = 978 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 198/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + Q +++I L L LF G+ ++ T + S + Sbjct: 603 DLVQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|148560597|ref|YP_001258160.1| DNA polymerase I [Brucella ovis ATCC 25840] gi|148371854|gb|ABQ61833.1| DNA polymerase I [Brucella ovis ATCC 25840] Length = 978 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 106/615 (17%), Positives = 198/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 L+ + H K G K ++ D RA Sbjct: 498 GTGRHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|225851663|ref|YP_002731896.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|256264827|ref|ZP_05467359.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|225640028|gb|ACN99941.1| DNA polymerase I [Brucella melitensis ATCC 23457] gi|263095282|gb|EEZ18909.1| DNA polymerase I [Brucella melitensis bv. 2 str. 63/9] gi|326408142|gb|ADZ65207.1| DNA polymerase I [Brucella melitensis M28] gi|326537853|gb|ADZ86068.1| DNA polymerase I [Brucella melitensis M5-90] Length = 978 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 391 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 440 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 441 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 497 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 498 GTDSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 542 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 543 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 602 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 603 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 660 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 661 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 720 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 721 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 756 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 757 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 816 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 817 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 876 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 877 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 936 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 937 NEVEKTIPVVRRVME 951 >gi|82701702|ref|YP_411268.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] gi|82409767|gb|ABB73876.1| DNA polymerase I [Nitrosospira multiformis ATCC 25196] Length = 905 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 104/595 (17%), Positives = 193/595 (32%), Gaps = 107/595 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQ 59 +D ET P+ VG+ E + + P +L D + P Sbjct: 331 SLDTETTGLDPMRAELVGISFSVEPHHGAYIPLGHRYTGVPRQLPLDFVLEKLKP----- 385 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118 +L D + + N F+R +F GI + T + + LAL Sbjct: 386 WLTDPSAPKLGQNLKFDRHVFANH-GIGLKGI-VHDTLLQSYVFESHRPHDMDNLALRHL 443 Query: 119 SEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +E GK F + I + +Y D + T +L + Sbjct: 444 GIKTITYDEVTGKGAARIGFEQVDI----------------ERAAQYAAEDADVTLQLHQ 487 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L E + + + G +D+ L+ + ++ L+E Sbjct: 488 HLYAEVGKDAKLDHIYRTLEMPVMDVLFEMERNGVLLDIKLLETQSRELGEKMLALEERA 547 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + + ++ LF + ++ + + S + +LA D L R Sbjct: 548 CTIAGLPF-NLNSPKQIQEILFDRLKLPVMKKTPSGVPST-DEDVLQKLALDYPLARALL 605 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L V GR+ + TGR + QN+P + Sbjct: 606 DYRGLAKLKSTYTDKLPRMVHPVTGRVHTNYA-QAVAVTGRLASNEPNLQNIPIRT---- 660 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +G +++ AD + IE R++A I+ + Sbjct: 661 --------------------AEGRRIREAFIAPSGYRIISADYSQIELRIMAHISQDAGL 700 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +KAFA GEDI+ T ++ F P++ V+ EQR K++ L Y A + Sbjct: 701 LKAFAQGEDIHRATGSEIFGVPLETVNSEQRRYAKIINFGLIYGMSEFGLATQLGIERAA 760 Query: 455 CGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFA 493 + ++ + + E LW+ + A Sbjct: 761 ARTYMDRYFSRYPGVADYMQRTRKTARENRYVETVFGRRLWLSEINSSNGMRRQAAERAA 820 Query: 494 VKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + + GTA +++K A W +H+ +L + + V E + +R Sbjct: 821 INAPMQGTAADIIKLAMIEVHDWLRRHELRSKLVMQVHDELVLEVPENEIETIKR 875 >gi|161831073|ref|YP_001597618.1| DNA polymerase I [Coxiella burnetii RSA 331] gi|161762940|gb|ABX78582.1| DNA polymerase I [Coxiella burnetii RSA 331] Length = 902 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 110/609 (18%), Positives = 206/609 (33%), Gaps = 110/609 (18%) Query: 1 MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49 M KL D ET + VGV ++A + + P +L + Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLGHDYTGAPAQL----D 371 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107 + + +L L D + N ++ + K G+ I +K + ++LA N + Sbjct: 372 KEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 LAL + G+ ++ + NHV Y D Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ + Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSLELGGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L++ KL S L+ L+ + + + G S + + + LA D Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L ++ ++ KL T L V R T + TGR S QN+P Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G ++V AD + +E R++A Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444 I+ + IKAF DI+ T A+ F +++V+ EQR K + L Y Sbjct: 691 ISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750 Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493 + + +A + ++ Q ++ + + + E +++ D + Sbjct: 751 LGIGRDLAQEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810 Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536 + + GTA +++K A W K+ ++Q+ +L A E Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKV 870 Query: 537 SISARRVAN 545 ++ Sbjct: 871 IPQIKKAME 879 >gi|220921495|ref|YP_002496796.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] gi|219946101|gb|ACL56493.1| DNA polymerase I [Methylobacterium nodulans ORS 2060] Length = 1024 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 94/517 (18%), Positives = 172/517 (33%), Gaps = 94/517 (18%) Query: 46 DRTEQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 D + +P+ L L D V+ V N ++ ++ + GI++ T Sbjct: 478 DLFGEGLLPNQLPWEAVRARLKPLLEDPAVLKVGQNLKYDWLVLARH-GIEVRPYD--DT 534 Query: 97 SVLARTNG-LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 +++ S LA H R K + D P D A Sbjct: 535 MLISYVLDAGKGSHGMDELARRHLGHQPITFADVTGTGR-TKVTFDRVPLDKATA----- 588 Query: 156 WQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDL 205 Y D + T L++ + P ER L + + G R+D + Sbjct: 589 ------YAAEDADVTLRLWRLMKPRLAAERRATVYETLERPLVPVLARMESCGIRVDRGM 642 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + +L +Q +L+ +I ++ S + LF G+ + + Sbjct: 643 LSRLSGDFSQSLARLEAEIQEMAGESF-SVSSPKQIGDILFGKFGLPGAKKTPSG-QWAT 700 Query: 266 SHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTG 318 + + +LA L + + KL +TL E R+ + A+ TG Sbjct: 701 PATLLEELAGQGHALPKKILEWRQLSKLKSTYTDTLQEHADRETNRVHTSFAL-AATTTG 759 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + +R +A G KL+ Sbjct: 760 RLSSSDPNLQNIPIRT------------------------EEGRRIRQAFVADEGHKLIS 795 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA IA +AFA G DI+ T + F P+D+++ + R K + Sbjct: 796 ADYSQIELRLLAHIADIPQLREAFAAGIDIHAATASAMFGVPLDQMTPDLRRRAKTINFG 855 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474 + Y G A ++Q+ + + D Sbjct: 856 IIYGISAFGLADRLGIPQGEAAAFIKQYFERFPGIRAYIDDIKKTCRDKGYVTTLFGRVC 915 Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + Q S++ + A+ + G+A +++++A Sbjct: 916 HYPQIRSNNPQERASVERQAINAPIQGSAADIIRRAM 952 >gi|89070699|ref|ZP_01157968.1| DNA polymerase I [Oceanicola granulosus HTCC2516] gi|89043720|gb|EAR49924.1| DNA polymerase I [Oceanicola granulosus HTCC2516] Length = 933 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 105/549 (19%), Positives = 194/549 (35%), Gaps = 87/549 (15%) Query: 46 DRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 D E M D L L D+++M VA ++ L + GI + A Sbjct: 396 DLAEG-QMDFDAALALLRPMLEDDSIMKVAQDAKAAMKLLGRH-GIALAPVDDTHLLSYA 453 Query: 101 RTNGLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANH-VQ 154 +GL L + L E + + GK+ F + +++ PY A+ ++ Sbjct: 454 LNSGLHGHTLDTLSDRLLGHRPIELKSVVGTGKSA-RTFDRVPVEAVTPYAAEEADIVLR 512 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 WQ + R + TR +++ L ER L + + G R+D D + ++ + Sbjct: 513 LWQALKQQLFRK-QVTR-VYETL------ERPLIPVLAGMERAGIRVDRDTLSRMSNAFS 564 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 Q+ L+ ++ +L + L LF G+ + T + LA Sbjct: 565 QKMAGLEAEVYELAGREF-NLGSPKQLGEILFDELGLPGGKKGK-TGAYGTGADVLEDLA 622 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQ 328 + L I KL ++L + + R+ + GA+ TGR + Q Sbjct: 623 TEHDLPGRILDWRQISKLKSTYTDSLQGYIQPETSRVHTSYSQAGAA-TGRLASTEPNLQ 681 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + +R +A GK LV D + IE R+ Sbjct: 682 NIPVRT------------------------EEGRRIREAFVADLGKVLVSLDYSQIELRI 717 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 LA +AG D +AF +G+DI+ T ++ FN P+++++ + R K + + Y G Sbjct: 718 LAHVAGLDALREAFRSGQDIHAATASEMFNVPLEEMTPDVRRQAKAINFGVIYGISGFGL 777 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------- 488 A+ + + ++ + + D A + Sbjct: 778 ARSLRIPREEAQGFINRYFERFPGIRDYMDETVAFAKEHGFVQTLFGRKIHTPEINAKGP 837 Query: 489 ----YPEFAVKDKLIGTACELVKKAWRAKHQGV--------LQLWKDLTEGFACVVQEGG 536 A+ + GTA +++++A + LQ+ +L E Sbjct: 838 GAGFARRAAINAPIQGTAADVIRRAMVRMPAAIEGLPATMLLQVHDELLFEVEEGAVEAL 897 Query: 537 SISARRVAN 545 +AR V Sbjct: 898 VAAAREVME 906 >gi|237654465|ref|YP_002890779.1| DNA polymerase I [Thauera sp. MZ1T] gi|237625712|gb|ACR02402.1| DNA polymerase I [Thauera sp. MZ1T] Length = 939 Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats. Identities = 111/596 (18%), Positives = 191/596 (32%), Gaps = 103/596 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60 D ET S P+ VG+ E A+ +L + EQ + L + Sbjct: 363 DTETTSLDPMAARLVGMSFAVEPGEAAYLPLAHR---GAAQLPEAPEQLPLDEVLDRLRP 419 Query: 61 -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 + + N ++ + GI + T + + + LA Sbjct: 420 WFESDRHAKLGQNLKYDAHVLANH-GIALRGIA-HDTLLESYVLESDKAHDMDSLAKR-- 475 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 HL + C +D EY D + T L + L P Sbjct: 476 -HLGLATIPYTEV---CGKGAKQIGFDEVDV------ARATEYAAEDADVTLRLHQHLCP 525 Query: 180 LS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + E + + Q + G ID L+ + E + + L+ + L Sbjct: 526 QLQALPQLEALYRELEMPVLGVLQRMERTGVLIDPFLLGQHSEELGRRLYTLEGEAHALA 585 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF G+ +V + T + + +LA+D L +L Sbjct: 586 GQPF-NLGSPKQLGEILFGKLGLPVVKKT-ATGQPSTDEEVLEKLAEDYPLPKLLLEHRG 643 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L V+ GR+ + A TGR S QN+P + Sbjct: 644 LSKLKSTYADKLPRMVNPRTGRVHTSFSQATAV-TGRLSSSEPNLQNIPIRT-------- 694 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA +V AD + IE R++A ++ + ++AF Sbjct: 695 ----------------PEGRRIRAAFIAPRDHLIVSADYSQIELRIMAHLSDDARLLEAF 738 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 A GED++ T + F +V+ EQR KV+ L Y AK + Sbjct: 739 ARGEDVHRATAGEVFGVAPAEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGIERAAAQAW 798 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 + ++ + + D +AE+ + A+ Sbjct: 799 IDRYFARYPGVAEYMDRTRAEAREQGYVETVFGRRLYLPDIRASQAGRRAGAERAAINAP 858 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +L+KKA A K + VLQ+ +L E R+ Sbjct: 859 MQGTAADLIKKAMIATDAWLASCGLKSKLVLQVHDELVLEVPGAELETVREELPRL 914 >gi|312795716|ref|YP_004028638.1| DNA polymerase I [Burkholderia rhizoxinica HKI 454] gi|312167491|emb|CBW74494.1| DNA polymerase I (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 927 Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 110/581 (18%), Positives = 194/581 (33%), Gaps = 111/581 (19%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 D ET S P+ VGV ++A + A+ D PV+L + + + L Sbjct: 353 SFDTETTSLDPMRARIVGV-SFATEPGRAAYVPLAHRGPDHPVQLP----RDEVLARLKP 407 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---L 116 +L V + ++ + GI + T + + LA L Sbjct: 408 WLESPAHKKVGQHLKYDAQVLASH-GITLAGIE-HDTLLESYVLESHRPHDMDNLATRHL 465 Query: 117 NFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + GK F + S+D EY D + T L + Sbjct: 466 GVKTIKYEDVAGKGAAQIGFDEVSVDVA----------------TEYSAEDADITLRLHQ 509 Query: 176 RLIPLSDGER-----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E+ + Q I G ID D ++ + +L + Sbjct: 510 VLYPQIQVEKGLDYVYRSIELPTARVLQIIERNGVLIDKDRLVAQSNELGIRMLELQAEA 569 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L G + + F + +V + S + +LA+D L ++ Sbjct: 570 YALAGGEF-NLNSPKQIGEIFFQQLQLPVVKKTPSGAPST-DEDVLQKLAEDYPLPKVLL 627 Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 A+ KL + L + ++ D GR+ + TGR + QN+P + Sbjct: 628 DYRALTKLKSTYTDKLPKMINPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---- 682 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G +V AD + IE R++A I+G+ Sbjct: 683 --------------------PEGRRIREAFIAPPGSSIVSADYSQIELRIMAHISGDASL 722 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF +GED++ T ++ F +V+ EQR I KV+ L Y A Sbjct: 723 MAAFEHGEDVHRATASEIFGVTRQEVTSEQRRIAKVINFGLIYGMSAFGLASNLGIARDA 782 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFA 493 L + ++ + + D + E+ LW+ + A Sbjct: 783 AKLYIDRYFARYPGVARYMDETRMEAKSCGFVQTVFGRRLWLPEINGGNGPRRQAAERAA 842 Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + + GTA +L+K + R K + ++Q+ +L Sbjct: 843 INAPMQGTAADLIKLSMITVQDWIERARVKSRLIMQVHDEL 883 >gi|254427356|ref|ZP_05041063.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] gi|196193525|gb|EDX88484.1| DNA polymerase I superfamily [Alcanivorax sp. DG881] Length = 921 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 101/581 (17%), Positives = 190/581 (32%), Gaps = 109/581 (18%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S L V V A +A + + P +L ++ + L Sbjct: 345 ALDTETTSLNYMQAELVGVSVAVEAGKAAYIPFGHNYPGAPDQL----DKQFVLDALKPI 400 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFS 119 L D+ + V N ++ + + +GI + + T + + + + LAL + Sbjct: 401 LEDDNLKKVGQNLKYDMSVLAEDVGITLRGVAY-DTMLESYVLDSVATRHDMDSLALKYL 459 Query: 120 EHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 T E GK F + + Y D + T L + Sbjct: 460 GRKTISFEEIAGKGAKQLTFNQVGL----------------HEASRYAAEDADVTLRLHQ 503 Query: 176 RLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P D E L + I G +D L+ + +A+ +L E Sbjct: 504 TLWPKLEKEGRLTEVFRDIELPLVTVLSRIERNGTYVDATLLKHQSQFLAKRMAELQEKA 563 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ S L L+ I ++ + S + + + +LA + L ++ Sbjct: 564 CEIAGQEFNLS-SPKQLGEILYQKLEIPVIKKTPKGAPST-AEAVLQELALEYPLPQVIM 621 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L E ++ GR+ + + TGR S QN+P + Sbjct: 622 DYRGVAKLKNTYTDKLPELINQRTGRVHTSY-HQAVAATGRLSSSDPNLQNIPVRS---- 676 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A G+K+V D + IE R++A ++ + Sbjct: 677 --------------------EEGRKIRQAFLAPKGRKIVACDYSQIELRIMAHLSDDKGL 716 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 AF G DI+ T A+ + +D+VS R K + L Y AK Sbjct: 717 TDAFEKGLDIHRATAAEVWGKTLDEVSDNDRRNAKAINFGLIYGMSAFGLAKQLGLPRKE 776 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFA 493 + + + + +A + + + A Sbjct: 777 AQEYIDLYFERYPGVKKYMADTRALAADNGYVETVYGRRLYLPEIHSKNGQRRQAAERAA 836 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + + GTA +++KKA H + ++Q+ +L Sbjct: 837 INAPMQGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDEL 877 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 Q + DI+ + M T +++ VHDE+V E + V + + M Sbjct: 842 QGTAADIIKKAMIKVHDWLETTDFDAKMIMQVHDELVFEVAEDQVDDLVREVKARM 897 >gi|146294987|ref|YP_001185411.1| DNA polymerase I [Shewanella putrefaciens CN-32] gi|145566677|gb|ABP77612.1| DNA polymerase I [Shewanella putrefaciens CN-32] Length = 922 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 105/565 (18%), Positives = 195/565 (34%), Gaps = 100/565 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + +D ET S L + A +A A+ + P +L ++ L Sbjct: 345 IAVDTETTSLDYMVAELVGMSFAVEAGKAAYLPLAHDYVGAPQQL----DKQFALEKLRP 400 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D+ V V N ++ + GI + + T + + N + S LA+ + Sbjct: 401 ILEDDKVKKVGQNLKYDISVLANA-GIKLQGVVF-DTMLESYVFNSVASRHDMDGLAIKY 458 Query: 119 SEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H + GK F + + ++ Y D + T L Sbjct: 459 LGHKNIGFEDIAGKGAKQLTFNQIPL----------------EVAAPYAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ++ E L + I +G ID L+ + + +A++ L+E Sbjct: 503 QHLWPRLEKEPQLASVFTEIELPLIQVLSDIERQGVLIDSMLLGQQSDELARKIDTLEEK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ + L++ F G + + S + +LA D L ++ Sbjct: 563 AYEIAGEKF-NLGSPKQLQVLFFEKLGYPITKKTPKGAPSTAEE-VLVELALDFPLPKVI 620 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + A+ TGR S QN+P + Sbjct: 621 LEHRSLSKLKSTYTDKLPLMVNAKTGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 676 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G+K++ AD + IE R++A ++ + Sbjct: 677 ---------------------EEGRRIRQAFIAPAGRKILAADYSQIELRIMAHLSQDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 +KAFA G+DI+ T A+ F T D V+ EQR K + L Y A+ + Sbjct: 716 LLKAFAEGKDIHRATAAEVFGTDFDAVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRN 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +A + + + Sbjct: 776 EAQTYIDTYFARYPGVLRYMEETRAGAAELGYVSTLFGRRLYLPEIRDRNAMRRQGAERA 835 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++KKA Q + Sbjct: 836 AINAPMQGTAADIIKKAMINIAQWI 860 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 17/98 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------- 617 RRL +++ + R +Q + DI+ + M N Sbjct: 813 GRRLYLPEIRDRNAMRRQGA---ERAAINAP------MQGTAADIIKKAMINIAQWIKTE 863 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 T+ +++ VHDE+V E ++ +C LM K Sbjct: 864 TQGEIAMIMQVHDELVFEVDADKAETLKQKVCELMAKA 901 >gi|121595619|ref|YP_987515.1| DNA polymerase I [Acidovorax sp. JS42] gi|120607699|gb|ABM43439.1| DNA polymerase I [Acidovorax sp. JS42] Length = 922 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 107/598 (17%), Positives = 188/598 (31%), Gaps = 114/598 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDLLQY--- 60 +D ET S L A I +++ + P L Sbjct: 349 ALDTETTSLDELR----------AEIVGVSFSVEPGAAAYIPLAHNGPDAPPQLPLAEVL 398 Query: 61 ------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + + ++R +F GI + T + + + A L Sbjct: 399 ERLRPWLEDPACPKLGQHVKYDRHVFANH-GIQVRGYA-HDTMLQSYVLEVHKPHGLASL 456 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A G+ I+ C P+ + A+ D + T + Sbjct: 457 AER--------HTGRTGISYEDLCGKGAKQIPFAQVPVDKAAAYS------CEDSDQTLD 502 Query: 173 LFKRLIPLS---DGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + L P D R ++ L+ I G ID + + Q +L++ Sbjct: 503 VHRVLWPQLQADDKLRGIYELEMACSETLFRIERNGVLIDAGKLAAQSHALGQRILQLEQ 562 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + + + L F G+ +V + T + +LA+D L Sbjct: 563 EAYAIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 620 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ KL + LS GR+ + TGR S QN+P + Sbjct: 621 LLEHRSLCKLKGTYTDKLSTLADPRTGRVHTHYA-QAVAVTGRLSSNEPNLQNIPIRT-- 677 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + AD + IE R++A I+G++ Sbjct: 678 ----------------------PEGRRVREAFVAPAGRVIASADYSQIELRIMAHISGDE 715 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + AF G D++ T A+ F +D+VS EQR KV+ L Y AK Sbjct: 716 ALLHAFREGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIET 775 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + ++ Q + + +A + + + Sbjct: 776 KAAAAYIDRYFQRYPGVKQYMEETKARAKARGYVETVFGRRLYLPEINSPNGPRRGAAER 835 Query: 492 FAVKDKLIGTACELVKKAWR-------AKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A+ + GTA +L+KKA A+ VL + + + + EG RR Sbjct: 836 AAINAPMQGTAADLIKKAMVAVQGELDARKPEVLMI-MQVHDELVFELPEGEVDWLRR 892 >gi|294626790|ref|ZP_06705383.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598906|gb|EFF43050.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 934 Score = 278 bits (710), Expect = 3e-72, Method: Composition-based stats. Identities = 98/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE QA + + PV+L DRT+ + L L Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQL-DRTQ---ALAQLAPLLT 416 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V + + ++ + ++ +G ++ Sbjct: 417 DPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 476 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K E+ C P+ + D + T L + L P Sbjct: 477 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLT 523 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + I G +D + + +++ + +L Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 583 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + V + S + + +A L R+ + K Sbjct: 584 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLTK 641 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E + GR+ + GA+ TGR S QN+P + Sbjct: 642 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 691 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G+KL+ D + IE R++A ++G+ + AF +G Sbjct: 692 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 736 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 737 ADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 796 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + F + + ++ + A+ + G Sbjct: 797 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 856 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K+A + +LQ+ +L Sbjct: 857 TAADIIKRAMVNVDGWIADHAQRAKMILQVHDEL 890 Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 742 ATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 801 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 802 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 861 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M N ++L VHDE+V E + + + + M Sbjct: 862 IKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 911 >gi|294138859|ref|YP_003554837.1| DNA polymerase I [Shewanella violacea DSS12] gi|293325328|dbj|BAJ00059.1| DNA polymerase I [Shewanella violacea DSS12] Length = 917 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 109/602 (18%), Positives = 208/602 (34%), Gaps = 111/602 (18%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + ID ET S L + A +A + + D P +L +Q+ + L Sbjct: 340 IAIDTETTSLNYMDAKLVGISFAIEAGKAAYLPLGHDYLDAPEQL----DQAEALAKLKP 395 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L + + V N ++ +F +GI + + T + + N + + LAL + Sbjct: 396 LLENPELKKVGQNLKYDISIFAN-VGIKLQGIAF-DTMLESYVFNSVATKHNMDDLALKY 453 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK + F + +++ Y D + T L Sbjct: 454 LGHKNISFEEIAGKGVKQLTFNQIDLETAA----------------PYAAEDADITLRLH 497 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P +D E L + I G ID ++ + +A+ +L++ Sbjct: 498 QHLWPRLEKEPELASVFTDIELPLIQVLSDIERGGVLIDSMMLGQQSGELARTIDELEQK 557 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ S L++ F G ++ + S + +LA D L ++ Sbjct: 558 AFEIAGEKFNLS-SPKQLQVLFFEKLGYPIIKKTPKGAPSTAEE-VLVELALDYPLPKII 615 Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V++ GR+ + A+ TGR S QN+P + Sbjct: 616 LQHRSLAKLKSTYTDKLPLMVNAKSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 671 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA GKK++ AD + IE R++A ++ ++ Sbjct: 672 ---------------------EEGRRIRHAFIAREGKKVLAADYSQIELRIMAHLSQDEG 710 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFA G+DI+ T A+ F+ +V+ EQR K + L Y AK Sbjct: 711 LLTAFAAGKDIHRATAAEVFDVDFGEVTTEQRRRAKAVNFGLIYGMSAFGLAKQLDIPRP 770 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + + +AE+ + + Sbjct: 771 EAQKYIDTYFKRYPGVLKYMEETRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERA 830 Query: 493 AVKDKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++KKA + ++Q+ +L E Sbjct: 831 AINAPMQGTAADIIKKAMINIAHWIATETHGEIDMIMQVHDELVFEVDSDRAEEMQAKVC 890 Query: 542 RV 543 ++ Sbjct: 891 QL 892 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M N T D+++ VHDE+V E + +C LM Sbjct: 837 QGTAADIIKKAMINIAHWIATETHGEIDMIMQVHDELVFEVDSDRAEEMQAKVCQLMADA 896 >gi|209965764|ref|YP_002298679.1| DNA polymerase I, putative [Rhodospirillum centenum SW] gi|209959230|gb|ACI99866.1| DNA polymerase I, putative [Rhodospirillum centenum SW] Length = 987 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 93/541 (17%), Positives = 172/541 (31%), Gaps = 93/541 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D V+ V N F+ +F + GI + GL + Sbjct: 465 LKPLLEDPAVLKVGQNVKFDWQIFARH-GIAMAPIDDTMLISYVLGTGLHGHGMDELALR 523 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + K +E + + D P D R +Y D + T L + Sbjct: 524 HLGHTTIKYDEVTGTGK--SRITFDRVPLDKAR-----------DYAAEDADITLRLHRV 570 Query: 177 L----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L ER L + + RG +D ++ ++ AQ +++ +I K Sbjct: 571 LKHDLVRQHMVTLYETVERPLVPVVARMESRGVLVDRAVLRQMSSDFAQRMLEMEAEIQK 630 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280 L + L LF + + + LA+ +L+ Sbjct: 631 LAPRAF-NVGSPKQLGEILFDEMKLPGGSKGKSG-AWGTDSGVLEGLAEQGVEIAQKVLD 688 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L+E + + GR+ + A+ TGR S QN+P + Sbjct: 689 WRQLAKLKSTYTDALAEQIDARTGRVHTSFAL-AATATGRLSSTDPNLQNIPIRT----- 742 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A G L+ D + IE R++A +AG Sbjct: 743 -------------------EEGRKIRRAFVARPGHLLLSVDYSQIELRLVAEMAGVPALR 783 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF +G DI+ T ++ F P+D+++ E R K + + Y G + Sbjct: 784 RAFHDGIDIHAMTASQVFGVPLDQMTSEIRRKAKAINFGIIYGISGFGLGRQLGITPGEA 843 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAV 494 G ++Q+ + T+ + +A + + A+ Sbjct: 844 GAFIRQYFERFPELQTYMETTKAFAREHGYVTTLLGRRCWIQGIREKAPARRAYAERQAI 903 Query: 495 KDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISARRVA 544 + GTA +++K+A +LQ+ +L E + R V Sbjct: 904 NAPIQGTAADIIKRAMARIEPALAAAKLDAAMLLQVHDELLFEVPEAQVEETAAVVRGVM 963 Query: 545 N 545 Sbjct: 964 E 964 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 13/88 (14%) Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS 643 R Y + N +Q + DI+ M K ++L VHDE++ E P+ Sbjct: 895 RAYAERQAINAPIQGTAADIIKRAMARIEPALAAAKLDAAMLLQVHDELLFEVPEAQ--- 951 Query: 644 VGTLCSLMTKNPSWAKGL--PLKAE-GY 668 V +++ A GL PL AE G+ Sbjct: 952 VEETAAVVRGVMEGAAGLGVPLVAEAGW 979 >gi|170739017|ref|YP_001767672.1| DNA polymerase I [Methylobacterium sp. 4-46] gi|168193291|gb|ACA15238.1| DNA polymerase I [Methylobacterium sp. 4-46] Length = 1016 Score = 277 bits (709), Expect = 3e-72, Method: Composition-based stats. Identities = 93/517 (17%), Positives = 172/517 (33%), Gaps = 94/517 (18%) Query: 46 DRTEQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 D + +P L L D V+ V N ++ ++ + GI+I T Sbjct: 470 DLFGEGLLPDQLPWDAVRARLKPLLEDPAVLKVGQNVKYDWLVLVRH-GIEIQPYD--DT 526 Query: 97 SVLARTNG-LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 +++ S LA H R K + D P D A Sbjct: 527 MLISYVLDAGKGSHGMDELARRHLGHQPITFADVTGTGR-AKVTFDRVPLDKATA----- 580 Query: 156 WQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDL 205 Y D + T L++ + P ER L + + G R+D D+ Sbjct: 581 ------YAAEDADVTLRLWRLMKPRLAAEHRATVYETLERPLVPVLARMEREGIRVDRDM 634 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + +L +Q +L+ +I ++ S + LF G+ + + Sbjct: 635 LSRLSGDFSQSLARLEAEIQEMAGETF-SVSSPKQIGDILFGKLGLPGAKKTPSG-QWAT 692 Query: 266 SHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTG 318 + + +LA L R + KL ++L E R+ + A+ TG Sbjct: 693 PATLLEELATQGHPLPRKILEWRQLSKLKSTYTDSLQEHAERESDRVHTSFAL-AATTTG 751 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + +R +A G +L+ Sbjct: 752 RLSSSDPNLQNIPIRT------------------------EEGRRIRQAFVADAGHQLIS 787 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R+LA +A +AFA+G DI+ T + F P+ +++ + R K + Sbjct: 788 ADYSQIELRLLAHMADIPQLRQAFADGLDIHAATASAMFGVPLGEMTPDLRRRAKTINFG 847 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474 + Y G A ++Q+ + + + Sbjct: 848 IIYGISAFGLADRLGIPQGEASAFIKQYFERFPGIRAYIEDTKKACRDKGYVTTLFGRVC 907 Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + Q S++ + A+ + GTA +++++A Sbjct: 908 HYPQIRSNNPQERASVERQAINAPIQGTAADIIRRAM 944 >gi|167842181|ref|ZP_02468865.1| DNA polymerase I [Burkholderia thailandensis MSMB43] Length = 926 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 117/605 (19%), Positives = 209/605 (34%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 354 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPLAHRGPDLPAQLP----RDEVLAKLTPWLE 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + + ++ + GI + T + + + LAL Sbjct: 410 DASRKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 467 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + +D EY D + T +L + L Sbjct: 468 TIKYEDVAGKGAQQIGFDEVPLDKA----------------SEYAAEDADITLQLHRALY 511 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA +L+++ L Sbjct: 512 PQVAREPGLMRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYAL 571 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 572 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 629 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 630 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 681 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G K+V AD + IE R++A I+ ++ ++A Sbjct: 682 -----------------AEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRA 724 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 725 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 784 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + +A + LW+ + A+ Sbjct: 785 YIDRYFLRYPGVAHYMEETRARAKERGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 844 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ +G VV+E Sbjct: 845 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPDGELSVVREKLPEMMCG 904 Query: 543 VANVP 547 VA + Sbjct: 905 VAKLK 909 Score = 44.7 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 16/136 (11%) Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +T A + + + VA+ R K ++ RRL ++ G A Sbjct: 777 ITRDAAKLYIDRYFLRYPGVAHYMEETRARAKERGYVETVFGRRLWLPEINGGNGPRRQA 836 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG---YDIVLTVHDEIVSETP 637 R +Q + D++ M G +++ VHDE+V E P Sbjct: 837 A---ERAAINAP------MQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVP 887 Query: 638 DTPYFSV-GTLCSLMT 652 D V L +M Sbjct: 888 DGELSVVREKLPEMMC 903 >gi|146280510|ref|YP_001170663.1| DNA polymerase I [Pseudomonas stutzeri A1501] gi|145568715|gb|ABP77821.1| DNA polymerase I [Pseudomonas stutzeri A1501] Length = 931 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 98/585 (16%), Positives = 191/585 (32%), Gaps = 121/585 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR----------TEQSAMPSD 56 D ET S A++A + ++A + E A+ S Sbjct: 357 DTETTSLD----------AQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLSA 406 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115 L L D + + ++ + GI++ + T + + + LA Sbjct: 407 LKPLLEDPAKTKICQHGKYDMNVL-MHYGIEMRGMAF-DTMLESYVLDATATRHDMDSLA 464 Query: 116 LNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + T + GK F + +I + G Y D + T Sbjct: 465 LKYLGRGTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDADVTL 508 Query: 172 ELFKRLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L+ L++ E L + I G +D L+ + + + +L Sbjct: 509 RLHQTLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQL 568 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + + + + L L+ G ++ + G S +D L Sbjct: 569 EREAFDIAGEEF-NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLP 627 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ ++ KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 628 KVIMQHRSLSKLKGTYTDKLPQQINPRTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT 686 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A+ G KL+ AD + IE R++A +A Sbjct: 687 ------------------------AEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQ 722 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + + AF N D++ T A+ F P+++VS +QR K + L Y AK Sbjct: 723 DAGLLHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDV 782 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489 + ++ + + + S + M+ Sbjct: 783 GRKEAQEYIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGA 842 Query: 490 PEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 A+ + GTA +++K+A A + +LQ+ +L Sbjct: 843 ERTAINAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDEL 887 >gi|260767538|ref|ZP_05876474.1| DNA polymerase I [Vibrio furnissii CIP 102972] gi|260617438|gb|EEX42621.1| DNA polymerase I [Vibrio furnissii CIP 102972] Length = 932 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 109/579 (18%), Positives = 200/579 (34%), Gaps = 89/579 (15%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + VGV +A AE +A A+ + D P +L ++ + + L L Sbjct: 358 DTETDSLDYMVANLVGVSFAVAEGEAAYVPVAHDYLDAPQQL----DRDWVLAQLKPILE 413 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR-TNGLPSSLKNACLALNFSE 120 D V N ++ + + DI + T + + N + LAL F + Sbjct: 414 DAQQAKVGQNLKYDASILARY---DINMQGIAHDTMLASYVYNSVGGKHDMDSLALRFMQ 470 Query: 121 HLTKMEE---GKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H E GK F + ++ PY A+ + +++ Sbjct: 471 HSCISFEQVAGKGKNQLTFNQIDLEQAAPYAAEDADVTLRLHHRLLPLLEQDDKLLSVYR 530 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 D E L + I G I+ L+ + IAQ +L++ + S Sbjct: 531 ------DIEMPLVPVLSRIERTGVLINDMLLGAQSQEIAQRLDELEKKAFDIAGQEFNLS 584 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 L+ F + ++ + S + + +LA D L + + KL Sbjct: 585 -SPKQLQTIFFDQMKLPVIKKTPSGTPST-NEEVLQELALDYPLPAVILEYRGLAKLKST 642 Query: 293 --NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + ++ GR+ + + TGR S QN+P + Sbjct: 643 YTDKLPKMINPTTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR---------------- 685 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A +G K++ D + IE R++A ++G+ ++AF G+DI+ Sbjct: 686 --------NEEGRRIRQAFVAPHGWKIMAVDYSQIELRIMAHLSGDKALLEAFQQGKDIH 737 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQN 465 T A+ ID+V+ EQR K + L Y AK + + + Sbjct: 738 AATAAEILGISIDQVTSEQRRRAKAVNFGLIYGMSAFGLAKQLGIPRGEAQAYMDTYFER 797 Query: 466 VKST-STFEDWEQAESHHLWM--------------------QDQYPEFAVKDKLIGTACE 504 ED + ++ + A+ + GTA + Sbjct: 798 YPGVMQYMEDTRSTAAEQGYVETLFGRRLHLPEITSRNGMRRKAAERAAINAPMQGTAAD 857 Query: 505 LVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEGG 536 ++KKA A+ G ++L + + V+E Sbjct: 858 IIKKAMLLVDAWIEAEGAGRVKLLMQVHDELVFEVEESA 896 >gi|160900757|ref|YP_001566339.1| DNA polymerase I [Delftia acidovorans SPH-1] gi|160366341|gb|ABX37954.1| DNA polymerase I [Delftia acidovorans SPH-1] Length = 947 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 110/590 (18%), Positives = 203/590 (34%), Gaps = 100/590 (16%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S + VG+ E A +A D P + + L + Sbjct: 374 ALDTETTSLDEMRAEIVGISLSVEPGAAAYIPLRHAGPDAPEQ---LPADEVL-QRLKPW 429 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D + + ++R +F GI++ T + + + A LAL Sbjct: 430 LEDAARPKLGQHVKYDRHVFANA-GIEVHGY-VHDTMLQSYVLEVHRPHGLASLALR--- 484 Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + I+ C P+ + A+ D + T ++ + L Sbjct: 485 -----HTNRTGISYEDLCGKGAHQIPFAQVPVDKAAAY------ACEDADQTLDVHRVLW 533 Query: 179 P---LSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P +DG R ++ L+ I G ID + + + Q +L+++ + Sbjct: 534 PQLQANDGLRGVYELEIATSEALFRIERNGVLIDAATLARQSNDLGQRIVQLEQEAYDIA 593 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L F G+ +V + T + +LA+D L + Sbjct: 594 GQPFNLA-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAKLLEHRS 651 Query: 289 ILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L++ A+ GR+ + TGR S QN+P + Sbjct: 652 LSKLKGTYTDKLAQLALPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT-------- 702 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR IA+ G + AD + IE R++A ++G++ ++AF Sbjct: 703 ----------------PEGRRVREAFIAAPGHVIASADYSQIELRIMAHLSGDESLLRAF 746 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 G D++ T ++ FN +++VS EQR KV+ L Y AK Sbjct: 747 HEGRDVHRATASEVFNVELEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAAAAY 806 Query: 459 LQQFSQNVKSTSTFEDWEQAESH-HLWMQDQY--------------------PEFAVKDK 497 + ++ Q + D + H +++ + A+ Sbjct: 807 IDRYFQRYPGVKRYMDETVEFARDHGYVETVFGRRLYLVDINGGSGPRKKAAERQAINAP 866 Query: 498 LIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + GTA +L+KKA A Q +++ + + + EG S R Sbjct: 867 MQGTAADLIKKAMVAVQAELDARQSEVRVIMQVHDELVFELPEGESDWVR 916 >gi|325577646|ref|ZP_08147921.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] gi|325160391|gb|EGC72517.1| DNA-directed DNA polymerase I [Haemophilus parainfluenzae ATCC 33392] Length = 932 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 103/550 (18%), Positives = 184/550 (33%), Gaps = 78/550 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + + V N ++ +F + GID+ + T + + LA Sbjct: 411 LKPVLENPAIQKVGQNFKYDLTIFARN-GIDVQGVAF-DTMLESYVLNSTGRHNMDDLAK 468 Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H T E GK F + ++ V + K E T E Sbjct: 469 RYLGHQTITFEEIAGKGKNQLTFNQIPLEKAAEYAAEDADVTMKLQQVLWEKLSKEPTLE 528 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L + E L + + RG ID D + IA +L+E L Sbjct: 529 ---KLFK--EMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSELEEQAYVLAGQPF 583 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ LF G+ ++ + S + + +LA L ++ + KL Sbjct: 584 NLA-STKQLQEILFDKLGLPVIQKTPKGAPST-NEEVLEELAFSHELPKVLVEHRGLSKL 641 Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + V+ GR+ + + TGR S QN+P + Sbjct: 642 KSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------------- 687 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA G +V AD + IE R++A ++ + I AF G+ Sbjct: 688 -----------NEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQGK 736 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462 DI+ +T A+ F +D+V+ EQR K + L Y A + + + + Sbjct: 737 DIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLGIGRADAQSYMDLY 796 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + TF S + + A+ + GT Sbjct: 797 FKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAINAPMQGT 856 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A +++K+A Q + A ++Q + V V + + + + Sbjct: 857 AADIIKRAMIQLDQKL-----QNDPDIAMIMQ----VHDELVFEVRSEKVEFYSKLIKTH 907 Query: 562 LPSSRRLVYS 571 + S+ LV Sbjct: 908 MESAADLVVP 917 >gi|289664670|ref|ZP_06486251.1| DNA polymerase I [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670794|ref|ZP_06491869.1| DNA polymerase I [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 933 Score = 277 bits (708), Expect = 4e-72, Method: Composition-based stats. Identities = 105/576 (18%), Positives = 195/576 (33%), Gaps = 104/576 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE +A + + PV+L DRT+ + L+ L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGKAAYLPFGHNFPGAPVQL-DRTQ---ALAQLVPLLT 415 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V + + ++ + ++ G+++ + A L S + N+ A + + L Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH-GVEL--------AGYAHDTLLESFVLNSGSARHDMDSL 466 Query: 123 TKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 K G + C P+ + D + T L L P Sbjct: 467 AKRYLGYDTVKYEDVCGKGAKQIPFAQISLEDATRY------AAEDADITLRLHHVLGPK 520 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + I G +D + + +++ + +L Sbjct: 521 LAAEPGLERVYREIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAG 580 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF + V + S + + +A L R+ + Sbjct: 581 RTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGL 638 Query: 290 LKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E + GR+ + GA+ TGR S QN+P + Sbjct: 639 TKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------- 690 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G+KL+ D + IE R++A ++G+ + AF Sbjct: 691 -----------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFE 733 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 +G D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 734 SGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYI 793 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498 + F + + ++ + A+ + Sbjct: 794 ALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPM 853 Query: 499 IGTACELVKKA------WRAKH----QGVLQLWKDL 524 GTA +++K+A W A H + +LQ+ +L Sbjct: 854 QGTAADIIKRAMVSVDGWIAGHAQRAKMILQVHDEL 889 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 57/170 (33%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860 Query: 610 LCEGMKNATK--NGY----DIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M + G+ ++L VHDE+V E + + + + M Sbjct: 861 IKRAMVSVDGWIAGHAQRAKMILQVHDELVFEADTDFVDTLLSEVTTRMA 910 >gi|50086044|ref|YP_047554.1| DNA polymerase I [Acinetobacter sp. ADP1] gi|49532020|emb|CAG69732.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter sp. ADP1] Length = 920 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 98/567 (17%), Positives = 202/567 (35%), Gaps = 98/567 (17%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + ID ET S + V A+ A + +D+ P +L + + + L Sbjct: 346 KRFAIDTETTSLDYRVAEMVGFSVAFDAQDAYYVPLTHDYDNAPEQL----NREQILAQL 401 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLA 115 L DETV + H+ ++ +F + K W ++LA N + + +A Sbjct: 402 KPILEDETVHKIGHHLKYDAHIFANH---SVELKGWYFDTMLASYVINSVATRHGMDDVA 458 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + HLT E GK + F + I+ + Y D T Sbjct: 459 RVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAEDAHVTY 502 Query: 172 ELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKL 220 L++ +L + E L+ ++ + + G ++D + +L + L Sbjct: 503 RLYEVLAQKLKSAPELENILYNIEMPVARILTGMEEAGIKLDHSFLGQLSVEFTETILGL 562 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + ++L + + LF G+ + T + S S + ++ + Sbjct: 563 ENQAIELAGESF-NVSSPKQVGEILFDKMGLKGGKKT-ATGQHSTSESILEKVEHPIAEV 620 Query: 281 RLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L + LK + L E ++ T + TGR S QN+P + Sbjct: 621 ILEHRTLSKLKNTYTDRLVEQSHNETHRVHTSYHQALTATGRLSSSDPNLQNIPIR---- 676 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 G +R IA G+ L+ AD + IE R++A + ++ Sbjct: 677 --------------------GEIGRQIRKAFIAPEGRILLAADYSQIELRLMAHFSQDEA 716 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------------- 444 + AF +G+D++ T A+ N P+++V+ +QR K + L Y Sbjct: 717 LLDAFQHGQDVHRRTAAEVLNIPLEEVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRE 776 Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEF 492 ++ + H + ++ Q + + + + ++ ++ ++ Sbjct: 777 ESQNYIKQYFHRYPGIYEYMQRTRQVALEQGFVETILGRRLYTPDIDARNMMVRKGAERA 836 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +++K A + + + Sbjct: 837 AINAPLQGSAADIIKLAMIEVDKMLPK 863 >gi|95931003|ref|ZP_01313731.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] gi|95132899|gb|EAT14570.1| DNA polymerase I [Desulfuromonas acetoxidans DSM 684] Length = 891 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 102/574 (17%), Positives = 189/574 (32%), Gaps = 115/574 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRT--EQSAMPSD-- 56 + +D ET S PL A + +A + V + + +P D Sbjct: 318 ISVDTETTSLNPLL----------AEVVGFCFAVEPGHGWYVPVGHCGGGAEEQLPRDEV 367 Query: 57 ---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L D T+ V N ++ ++ ++ I + + ++L P++ + Sbjct: 368 VAQVQPLLEDATLAKVGQNLKYDALVLRRA---GIALRGVVADTMLQSYLLYPAARSHGL 424 Query: 114 LALNFSEHLTKM-------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 AL KM GK I F + ++D Y D Sbjct: 425 DALAADHLGYKMISYSEVAGTGKKQIG-FDEVALDVATR----------------YAAED 467 Query: 167 VEATRELFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T +L++R D E L + + G R+D + + L + Sbjct: 468 ADITLQLYQRFDAELDGTLRELFETVEMPLLQVLIDMEWWGVRVDRERLDALSAGFSTSI 527 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 K+L++ I +L + L + LF + ++ + + LA Sbjct: 528 KQLEQQIYELAGEEF-NINSPKQLGVILFEKLDLPHGKKTK--TGWSTAVDVLKNLADKH 584 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + L ++ KL + L + D GR+ + + TGR S QN+P Sbjct: 585 DVVALILQYRSLAKLKGTYTDALPLLIHPDSGRIHTSFN-QAVTATGRLSSSDPNLQNIP 643 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R + G+ L+ AD + IE RV+A Sbjct: 644 IRS------------------------EEGRAIREAFVPDAGQVLLAADYSQIELRVMAH 679 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 +A E ++F GEDI+ T ++ F+ D V E R K + + Y G AK Sbjct: 680 MADEPILQESFRQGEDIHQRTASEIFSVFPDMVDSEMRRRAKTINFGVLYGMGAFSLAKD 739 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWE---------------------QAESHHLWMQ 486 + + + + F + + S + ++ Sbjct: 740 LGISNKEAKQYIDHYFERYPAVLEFIEQQKQFGREHLYVETLLGRRCAVSDINSKNGQVR 799 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 AV + G+A +++K A HQ + L Sbjct: 800 SYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDL 833 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 10/72 (13%) Query: 586 QLMRERTYGGKLTENI-VQAISRDILCEGMKNATKNGYDI------VLTVHDEIVSETPD 638 + + R+Y + N VQ + DI+ M + D+ VL VHDE+V + P Sbjct: 794 KNGQVRSYAERNAVNYPVQGSAADIIKVAMVRIHQRLQDLQLKTRMVLQVHDELVFDVPK 853 Query: 639 TPYFSVGTLCSL 650 V + +L Sbjct: 854 DE---VDDVVAL 862 >gi|162149305|ref|YP_001603766.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209544963|ref|YP_002277192.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|161787882|emb|CAP57480.1| putative DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] gi|209532640|gb|ACI52577.1| DNA polymerase I [Gluconacetobacter diazotrophicus PAl 5] Length = 943 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 85/515 (16%), Positives = 155/515 (30%), Gaps = 82/515 (15%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 DD P + + E + L L D +V+ + N+ F+ ++ + Sbjct: 401 DDAPDPVGPQLETGLALAILGPLLADASVLKIFQNAKFDLLVLTRAGAPQPAPVDDTMLI 460 Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 A+ G + L +E + + D RA Sbjct: 461 SYAQFAGRHGQGMDELSRLYLGHTPIPYDEVTGT----GRNRVPFARVDVARATA----- 511 Query: 158 LFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 Y D + T L+ L P + ER L + + G ID+ + Sbjct: 512 ----YAAEDADVTLRLWLSLRPTLRIHHALALYEELERPLVAVLADMERAGIAIDVVELR 567 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ A +++ +I L + L LF G+ + Sbjct: 568 RMSADFATRMAQMEAEIQALAGRSF-NVGSPKQLGEILFDEMGLPGGKRMKSG-AWGTDS 625 Query: 268 SNITQLAKD------LILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRW 320 S + LA IL + + L + D R+ + Q + TGR Sbjct: 626 SVLQDLADQGHDLPGRILAWRQLAKLKSTYADALVKQADPDTARVHTSFQM-AITSTGRL 684 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + +R +A+ G L+ AD Sbjct: 685 SSNEPNLQNIPIRT------------------------EEGGRIRRAFVAAPGHVLLSAD 720 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA +A +AFA G+DI+ T ++ F PI+ + R K + + Sbjct: 721 YSQIELRLLAHVADIPALREAFALGQDIHARTASEVFGIPIEGMDPLTRRRAKAINFGII 780 Query: 441 YQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------ 484 Y A + + + + + + E+ Sbjct: 781 YGISAFGLGRQLGIPPGEARAYIDAYFARYPGIRAYMETVKQEAKDQGYVTTPFGRRCWV 840 Query: 485 ---------MQDQYPEFAVKDKLIGTACELVKKAW 510 + A+ L G A +++K+A Sbjct: 841 PGIADRSAVRRAYAERQAINAPLQGGAADIIKRAM 875 >gi|164685884|ref|ZP_01945351.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918262|ref|ZP_02218348.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212217767|ref|YP_002304554.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] gi|164601404|gb|EAX33842.2| DNA polymerase I [Coxiella burnetii 'MSU Goat Q177'] gi|165918122|gb|EDR36726.1| DNA polymerase I [Coxiella burnetii RSA 334] gi|212012029|gb|ACJ19409.1| DNA polymerase I [Coxiella burnetii CbuK_Q154] Length = 902 Score = 277 bits (708), Expect = 5e-72, Method: Composition-based stats. Identities = 110/609 (18%), Positives = 206/609 (33%), Gaps = 110/609 (18%) Query: 1 MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49 M KL D ET + VGV ++A + + P +L + Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLGHDYTGAPAQL----D 371 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107 + + +L L D + N ++ + K G+ I +K + ++LA N + Sbjct: 372 KEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 LAL + G+ ++ + NHV Y D Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ + Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L++ KL S L+ L+ + + + G S + + + LA D Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L ++ ++ KL T L V R T + TGR S QN+P Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G ++V AD + +E R++A Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444 I+ + IKAF DI+ T A+ F +++V+ EQR K + L Y Sbjct: 691 ISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750 Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493 + + +A + ++ Q ++ + + + E +++ D + Sbjct: 751 LGIGRDLAQEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810 Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536 + + GTA +++K A W K+ ++Q+ +L A E Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEMAEKDLEKV 870 Query: 537 SISARRVAN 545 ++ Sbjct: 871 IPQIKKAME 879 >gi|158522583|ref|YP_001530453.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] gi|158511409|gb|ABW68376.1| DNA polymerase I [Desulfococcus oleovorans Hxd3] Length = 892 Score = 277 bits (707), Expect = 5e-72, Method: Composition-based stats. Identities = 93/554 (16%), Positives = 179/554 (32%), Gaps = 80/554 (14%) Query: 7 DIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET + P L + + ++A +A++ PV+L ++ A+ L Sbjct: 319 DTETTALDPMKARLVGISLALEPDEAFYIPVGHAYEGAPVQL----DRDAVLRILAPAFE 374 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP------SSLKNACLAL 116 + + + N ++ + + G I + T + A L L Sbjct: 375 NTKITKIGQNVKYDWTVLSRC-GFKIDGPVF-DTMIAAYLLNPTRRSYGLDRLAADYLNH 432 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + GK ++ PY A+ R +E + Sbjct: 433 RMISYQDVTGTGKNAKCFSAVPLEEAIPYAAEDADIT-------FSLHRLLEKELKQGGL 485 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E L + + G +D + + L + + + +KL+ +I L + Sbjct: 486 FELLETIEMPLVPVLMHMEMAGVAVDREALAALSKELEGQLEKLEGEIYGLAGETF-NIN 544 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL---- 292 L + LF G+ ++ +T LA L L + KL Sbjct: 545 SPQQLGVILFEKLGLPTQKKTKKKTGYSTDADVLTTLADHHELPALLLRHRTLAKLKSTY 604 Query: 293 -NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L+E + GR+ + A+ TGR S QN+P + Sbjct: 605 ADALAELILPETGRIHTSFN-QTATATGRLSSTDPNLQNIPIRT---------------- 647 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R + G V AD + +E R+LA + + I+AF N EDI+ Sbjct: 648 --------EEGRQIRKAFVPRPGWTFVSADYSQVELRILAHYSQDPILIEAFENDEDIHT 699 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 T ++ F + ++++ R K + + Y G A+ + + Sbjct: 700 RTASEVFQLFPEMITEDVRRQAKAINFGIVYGISPFGLARDLGISQKMAKNYMDSYFSRY 759 Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505 F D A++ + +Q A+ + GTA ++ Sbjct: 760 SRVKEFMDKAIADARETGQTRTMFGRIRYLPDIDSPNRTLQGYAERAAINTPIQGTAADI 819 Query: 506 VKKAWRAKHQGVLQ 519 +K A A + + + Sbjct: 820 MKLAMIATEKALAK 833 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 8/70 (11%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642 + Y + N +Q + DI+ M K ++L+VHDEIV E P Sbjct: 799 LQGYAERAAINTPIQGTAADIMKLAMIATEKALAKEKLVSVMLLSVHDEIVLECPPDEVK 858 Query: 643 SVGTLCS-LM 651 +V L + +M Sbjct: 859 TVSALVADIM 868 >gi|212211830|ref|YP_002302766.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] gi|212010240|gb|ACJ17621.1| DNA polymerase I [Coxiella burnetii CbuG_Q212] Length = 902 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 110/609 (18%), Positives = 206/609 (33%), Gaps = 110/609 (18%) Query: 1 MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49 M KL D ET + VGV ++A + + P +L + Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLGHDYTGAPAQL----D 371 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107 + + L L D + N ++ + K G+ I +K + ++LA N + Sbjct: 372 KEEVLRKLKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 LAL + G+ ++ + NHV Y D Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ ++ Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELSGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L++ KL S L+ L+ + + + G S + + + LA D Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L ++ ++ KL T L V R T + TGR S QN+P Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G ++V AD + +E R++A Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444 I+ + IKAF DI+ T A+ F +++V+ EQR K + L Y Sbjct: 691 ISKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750 Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493 + + +A + ++ Q ++ + + + E +++ D + Sbjct: 751 LGIGRDLAQEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810 Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536 + + GTA +++K A W K+ ++Q+ +L A E Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKV 870 Query: 537 SISARRVAN 545 ++ Sbjct: 871 IPQIKKAME 879 >gi|110636269|ref|YP_676477.1| DNA polymerase I [Mesorhizobium sp. BNC1] gi|110287253|gb|ABG65312.1| DNA polymerase I [Chelativorans sp. BNC1] Length = 978 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 104/627 (16%), Positives = 198/627 (31%), Gaps = 112/627 (17%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL-- 58 +D ET S P L + + +A ++ E D + + Sbjct: 391 ALDTETTSLDPMQAELCGIALATAPNRAAYLPLSHKNGAE-----DLLGGGMVDGQIRVE 445 Query: 59 -------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 L+D +V+ + N ++ +L + GI+I G + + Sbjct: 446 EALAVLRPLLQDPSVLKIGQNLKYDWVLLYRH-GIEIAPYDDTMLISYVLEAGTQAHGMD 504 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 A +E K + D + Y D + T Sbjct: 505 ALAERWLGHTPVSYKEVTGSGR--SKVTFDMV-----------GLERATVYASEDADVTL 551 Query: 172 ELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L+K L P ER + + + RG +D ++ ++ AQ ++ Sbjct: 552 RLWKVLKPQLAAKGLVSVYERLERPMVSVICRMEHRGIMVDRQILSRMSGDFAQTAAAME 611 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILN 280 E+I +L G L LF G+ ++ + S + +LA L Sbjct: 612 EEIYRLAGGRFTI-GSPKQLGDILFGRMGLPGGAKTKSG-QWSTSAQVLEELAAAGHELP 669 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 R + KL + L + GR+ + ++ TGR S QN+P + Sbjct: 670 RKIVDWRQVTKLKSTYTDALPGYIHPETGRVHTSYSL-ASTTTGRLSSSEPNLQNIPVRT 728 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R+ IA+ G KL+ AD + IE RVLA +A Sbjct: 729 ------------------------PEGRKIRTAFIAAPGYKLISADYSQIELRVLAHVAD 764 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 KAFA G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 765 IPELKKAFAEGMDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSI 824 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 G ++++ + + + + + S + ++ Sbjct: 825 PRDEAGAYIKRYFERFPGIRDYMERTKAFCREKGYVETIFGRRAHYPEIRSSNPSVRAFN 884 Query: 490 PEFAVKDKLIGTACELVKKAWRA-----KHQGVL------QLWKDLTEGFACVVQEGGSI 538 ++ + G+A +++++A G++ Q+ +L E Sbjct: 885 ERASINAPIQGSAADIIRRAMMRMEAALADSGLVDVKMLLQVHDELVFEAPEDAIERAIP 944 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSS 565 R V R + + ++ Sbjct: 945 VIRTVMEGAAWPARSLSVPLKVDARAA 971 >gi|148265918|ref|YP_001232624.1| DNA polymerase I [Geobacter uraniireducens Rf4] gi|146399418|gb|ABQ28051.1| DNA polymerase I [Geobacter uraniireducens Rf4] Length = 892 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 113/598 (18%), Positives = 207/598 (34%), Gaps = 102/598 (17%) Query: 2 SKLFIDIETRSPQPLPK--VGV-WAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 +D+ET S PL VG+ +++ E A + + P +L + + L Sbjct: 314 RAFAVDLETTSLNPLEAEIVGISFSFREHEAYYIPVGHRYPGAPHQL----SRDDVLGAL 369 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLA 115 L D + N ++ + ++ GID+ W C ++LA P+ S LA Sbjct: 370 KPLLLDPEKHKIGQNIKYDYQVLRRA-GIDMQGI-W-CDTMLASYLLNPTRTSQGLDSLA 426 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + F +H A +A K + + +A Y D +AT L K Sbjct: 427 VEFLDHRMI---SYAEVAGKGKEQKNFAQVEVEKA---------SVYSCEDADATYLLHK 474 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +P + E L + + G ++DL L+ +L + + L+ +I Sbjct: 475 LFLPRLAESGMERLFFELEMPLVKILAEMELYGVKLDLPLLQRLSDGFGGQLADLEREIF 534 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L G + L LF + + ++ + + +LA + + RL Sbjct: 535 ALAGGEF-NVNSPKQLGEVLFERLQLQVGKKTKTKTGWSTNVDELERLAGEHEIARLILQ 593 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ KL + L + V + GR+ + + TGR S QN+P + Sbjct: 594 YRSLSKLKSTYTDALPKLVDAASGRVHTSYN-QAVTNTGRLSSSEPNLQNIPIRS----- 647 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA+ G L+ AD + IE RVLA ++ + Sbjct: 648 -------------------EEGRSIRHAFIAAEGCLLLSADYSQIELRVLAHLSADRVFC 688 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AFA EDI+ T A+ F V++E R K + + Y G A+ Sbjct: 689 DAFARDEDIHTRTAAEVFGLFPQMVTQEMRRQAKTINFGVIYGQGAFSLARELGVSTKVA 748 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + TF D +S + ++ AV Sbjct: 749 KEFIDNYFARHAGARTFLDGCVREAEDNGYVTTILGRRLPIPDIKSSNGNIRAFAQRNAV 808 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + G+A +++K+A K + ++Q+ +L + + + Sbjct: 809 NYPIQGSAADIIKQAMVRVVDRMEREGMKSRLIMQVHDELVFEVPEEEKLAMEMLVKH 866 >gi|163792693|ref|ZP_02186670.1| DNA polymerase I [alpha proteobacterium BAL199] gi|159182398|gb|EDP66907.1| DNA polymerase I [alpha proteobacterium BAL199] Length = 943 Score = 277 bits (707), Expect = 6e-72, Method: Composition-based stats. Identities = 91/502 (18%), Positives = 172/502 (34%), Gaps = 92/502 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L + V+ +AHN+ ++ ++ + I T L+ GL + Sbjct: 414 LKDLLENPAVLKIAHNAKYDALVLSRPKNGGITVAPIDDTMCLSYVLEGGLHGHGLDELA 473 Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ K EE GK I F + ID Y D + T Sbjct: 474 TLHLGHTNIKFEEVCGKGKTQIG-FAEAPIDKA----------------CAYAAEDADVT 516 Query: 171 RELFKRLIP--LSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L P + + ER L + + G ++D ++ + A+ L Sbjct: 517 FRLHALLKPRLVPERMTTVYETLERALIPVLVGMERNGIKVDPTILRDMSADFAKRLVTL 576 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH--SNITQLA 274 + +I + + L LF G+ + GT +L + + A Sbjct: 577 EGEIHEQAGEPF-NVGSPKQLGEILFDKMGLAGGKKGKTGAYGTGADVLETLAAEGSDFA 635 Query: 275 KDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + ++ R + + + L E ++ GR+ + GA+ TGR S QN+P + Sbjct: 636 RKVLDWRQIAKLKST-YTDALVETINAETGRVHTSYSMVGAA-TGRLSSNDPNLQNIPIR 693 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R+ +A G L+ D + IE R++A IA Sbjct: 694 T------------------------EEGRKIRTAFVAEPGNVLLSVDYSQIELRLVADIA 729 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 G + KAF +G DI+ T ++ F P+ +++ + R K + + Y G A+ Sbjct: 730 GIESLRKAFLDGIDIHAQTASEVFGVPLSEMTPDIRRKAKAINFGIIYGISGFGLARQLS 789 Query: 450 TMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQ 488 T + + + + + + + M++ Sbjct: 790 TSQAEAQAYINAYFERFPGIRDYMTEMKTFAREHGFVETKFGRKVHIQAIRDKNPAMRNF 849 Query: 489 YPEFAVKDKLIGTACELVKKAW 510 A+ + GTA +++K+A Sbjct: 850 GERAAINAPIQGTAADVIKRAM 871 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 10/77 (12%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM--T 652 +Q + D++ M ++ ++L VHDE++ E P+ + L +M Sbjct: 859 IQGTAADVIKRAMVRLPVALDKAQSKARMLLQVHDELLFEVPEDDVEATSALVREVMEGA 918 Query: 653 KNPSWAKGLPLKAE-GY 668 P +PL AE G+ Sbjct: 919 AAPQLNLSVPLIAEAGW 935 >gi|146305195|ref|YP_001185660.1| DNA polymerase I [Pseudomonas mendocina ymp] gi|145573396|gb|ABP82928.1| DNA polymerase I [Pseudomonas mendocina ymp] Length = 931 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 94/587 (16%), Positives = 193/587 (32%), Gaps = 97/587 (16%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + D ET S L + A +A A+++ P +L ++ A+ L Sbjct: 352 IAFDSETTSIDAQQAQLVGLSFAVKAGEAAYVPLAHSYMGVPQQL----DRDAVLKALKP 407 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D V ++ ++ + I + ++L L + + Sbjct: 408 ILEDPAKAKVGQHAKYDINVLANA-STPIAVQGVAFDTMLESYV-----LDSTATRHDMD 461 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI- 178 K G + I F + A + G Y D + T L + L Sbjct: 462 SLALKYL-GHSTIR-FEDIAGRGAKQ---LTFDQIALEQAGPYAAEDADVTLRLHQELWG 516 Query: 179 ----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L + E L + I G +D L+ + + ++ +L+ ++ Sbjct: 517 RLEAVPSLAKVLREIEIPLVPVLARIERNGALVDAKLLGEQSVELGEKLVELERKAFEIA 576 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L + L+ G ++ + S +D L ++ + Sbjct: 577 GEEFNLA-SPKQLGVILYEKLGYPVISKTAKGQPSTAEAVLAELAEQDFELPKVLMQYRS 635 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L E ++ GR+ + + TGR S QN+P + Sbjct: 636 LSKLKSTYTDKLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNIPIRT-------- 686 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G K++ AD + IE R++A +A ++ + AF Sbjct: 687 ----------------AEGRRIRQAFVAPKGYKMMAADYSQIELRIMAHLAKDEGLLDAF 730 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 + D++ T A+ F +++V+ +QR K + L Y AK Sbjct: 731 RHDLDVHKATAAEVFGVALEEVTSDQRRKAKAINFGLIYGMSAFGLAKQIDVERKEAQAY 790 Query: 459 LQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDK 497 + ++ ++ + +A+ + + M+ A+ Sbjct: 791 IDRYFARYPGVLSYMERTRAQAAEQGYVETVFGRRLYLPEIHAQNQAMRKGAERAAINAP 850 Query: 498 LIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534 + GTA +++K+A A + +LQ+ +L + E Sbjct: 851 MQGTAADIIKRAMIAVDDWLQGSGIDARIILQVHDELVLEVREDLLE 897 Score = 45.9 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 18/96 (18%) Query: 565 SRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTENIVQAISRDILCEGMKNATK---- 619 RRL ++ N A + R +Q + DI+ M Sbjct: 823 GRRLYLPEIHAQ----NQAMRKGAERAAINAP------MQGTAADIIKRAMIAVDDWLQG 872 Query: 620 --NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 I+L VHDE+V E + V L +LM Sbjct: 873 SGIDARIILQVHDELVLEVREDLLEEVGAQLKALMG 908 >gi|152977709|ref|YP_001343338.1| DNA polymerase I [Actinobacillus succinogenes 130Z] gi|150839432|gb|ABR73403.1| DNA polymerase I [Actinobacillus succinogenes 130Z] Length = 956 Score = 277 bits (707), Expect = 7e-72, Method: Composition-based stats. Identities = 89/509 (17%), Positives = 166/509 (32%), Gaps = 69/509 (13%) Query: 44 LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 L D+ + + L L + + + N ++ +F GI + + T + + Sbjct: 422 LPDQLNREDCLARLKPVLENADIRKIGQNLKYDLTIFANH-GIQVQGVAF-DTMLESYVL 479 Query: 104 GLPSSLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLF 159 LA + H T E GK F K + V Sbjct: 480 NSTGRHNMDDLAERYLGHQTISFETLAGKGKNQLTFDKIPLAQAAEYAAEDADVTMKLHQ 539 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + + +E T L D E L + I G ID + K + + Sbjct: 540 TLWAE--LEKTPTLTTLFK---DIELPLVSVLSRIERNGVLIDAQALRKQSQEFGERLTA 594 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+ ++ + L+ LF + ++ + S + +LA D L Sbjct: 595 LEAKAHEIAGEAFNLA-SPKQLQEILFNKLHLPVLQKTPKGDPST-KEEVLEELAFDHEL 652 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 653 PKLLVEHRGLAKLKSTYTDKLPQMINPHTGRVHTSY-HQAVTATGRLSSTDPNLQNIPIR 711 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A +G +++ AD + IE R++A ++ Sbjct: 712 ------------------------NEEGRRIRQAFVARDGYRIIAADYSQIELRIMAHLS 747 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFK 449 G+ AF G DI+ +T ++ F P++ VS EQR K + L Y A + Sbjct: 748 GDKGLTTAFVEGRDIHRSTASEIFGIPLEDVSAEQRRSAKAINFGLIYGMSAFGLSRQLA 807 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + Q + TF +S + + Sbjct: 808 ISRMEAKKYMDLYFQRYPNVQTFMHDIQEKAKAQGFVETLFGRRLYLPDIKSGNASRRKG 867 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGV 517 A+ + GTA +++K+A + Sbjct: 868 AERVAINAPMQGTAADIIKRAMIDIDHVI 896 >gi|167031159|ref|YP_001666390.1| DNA polymerase I [Pseudomonas putida GB-1] gi|166857647|gb|ABY96054.1| DNA polymerase I [Pseudomonas putida GB-1] Length = 915 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 94/572 (16%), Positives = 182/572 (31%), Gaps = 103/572 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ ++ P +L ++ A+ L L D V N+ ++ + Sbjct: 364 AAYVPLAHDYEGAPAQL----DRDAVLLALKPLLEDPAKAKVGQNAKYDINILANGSPAI 419 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDS 142 T + + + LA + +H T E GK F + ++D Sbjct: 420 EMRGVAYDTMLESYVLNSTATRHDMDSLAQKYLDHTTIAFEDIAGKGAKQLTFNQINLDK 479 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 G Y D + T L + L L D E L + Sbjct: 480 A----------------GPYAAEDADITLRLHQALQARLAQTPSVQPVLMDIEMPLVPVL 523 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D L+ + + +L++ +L + L L+ G+ Sbjct: 524 AKIERQGALVDAALLHVQSGELGVKMGELEQRAYELAGEEF-NLGSPKQLGAILYDKLGM 582 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S L + ++ KL + L ++ GR+ Sbjct: 583 PVLSKTAKGQPSTAEAVLDELALLGYPLPEVLMQYRSLSKLKSTYTDKLPGQINPRTGRI 642 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + Q + TGR S QN+P + +R Sbjct: 643 HTSYQ-QAVAATGRLSSSDPNLQNIPIRT------------------------AEGRRIR 677 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IAS G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F + V+ Sbjct: 678 QAFIASPGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVALQDVT 737 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 +QR K + L Y AK + ++ + + +A+ Sbjct: 738 TDQRRKAKAINFGLIYGMSAFGLAKQIGVDRKQSQDYIDRYFARYPGVLAYMERTRAQAA 797 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++K+A Sbjct: 798 EQGFVETLFGRRLYLPDINAKNPALRKGAERTAINAPMQGTAADIIKRAMVNVDNWLSES 857 Query: 515 ----QGVLQLWKDLTEGFACVVQEGGSISARR 542 + +LQ+ +L + + R+ Sbjct: 858 GLDARVILQVHDELVLEVREDLVQQVKDEIRQ 889 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 16/103 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + RRL D+ L R +Q + DI+ M N Sbjct: 801 FVETLFGRRLYLPDINAKNPAL---RKGAERTAINAP------MQGTAADIIKRAMVNVD 851 Query: 619 K------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 ++L VHDE+V E + V + M++ Sbjct: 852 NWLSESGLDARVILQVHDELVLEVREDLVQQVKDEIRQHMSQA 894 >gi|294664756|ref|ZP_06730083.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605467|gb|EFF48791.1| DNA polymerase I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 934 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 98/574 (17%), Positives = 181/574 (31%), Gaps = 100/574 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE QA + + PV+L DRT+ + L L Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPVQL-DRTQ---ALAQLAPLLT 416 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V + + ++ + ++ +G ++ Sbjct: 417 DPAVRKLGQHGKYDLHVMRRHGVELAGYAEDTLLESFVLNSGSARHDMDSLAKRYLGYDT 476 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K E+ C P+ + D + T L + L P Sbjct: 477 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLT 523 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + I G +D + + +++ + +L Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRT 583 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + V + S + + +A L R+ + K Sbjct: 584 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLTK 641 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E + GR+ + GA+ TGR S QN+P + Sbjct: 642 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 691 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G+KL+ D + IE R++A ++G+ + AF +G Sbjct: 692 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 736 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 737 ADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 796 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + F + + ++ + A+ + G Sbjct: 797 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 856 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K+A + +LQ+ +L Sbjct: 857 TAADIIKRAMVNVDGWIADHAQRAKMILQVHDEL 890 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 742 ATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 801 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 802 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 861 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M N ++L VHDE+V E + + + + M Sbjct: 862 IKRAMVNVDGWIADHAQRAKMILQVHDELVFEADVDFVDTLLSEVTTRMA 911 >gi|300309795|ref|YP_003773887.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] gi|300072580|gb|ADJ61979.1| DNA polymerase I protein [Herbaspirillum seropedicae SmR1] Length = 920 Score = 276 bits (706), Expect = 7e-72, Method: Composition-based stats. Identities = 107/590 (18%), Positives = 200/590 (33%), Gaps = 109/590 (18%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S + + VG+ E +A A+ + D PV+L + + L + Sbjct: 346 AVDTETTSLEAMQAELVGISLCCEPGRAAYIPVAHNYQDAPVQL----SRQHVLEKLKPW 401 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-LNFS 119 L D + + + ++ +F G+ + + T + + LA + Sbjct: 402 LEDASKPKLGQHLKYDSHIFANY-GVRLAGVK-HDTLLESYVFESHRPHDMDSLAARHLE 459 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E GK F + +I + EY D E T L + Sbjct: 460 RKTITYAEVCGKGASQIGFNEVAI----------------ERATEYAAEDAEVTLALHQA 503 Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + P + E ++ Q I G ID + + + + + ++++ Sbjct: 504 MWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLIDSERLGQQSHDLGKRMLEIEQQAY 563 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + L LF + +V + S + +LA+D L ++ Sbjct: 564 DLAGQPF-NLNSPKQLGEILFGKLELPVVKKTASGAPST-DEEVLQKLAEDYPLPKVLLD 621 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+ GR+ + TGR S QN+P + Sbjct: 622 YRGLAKLKSTYTDKLPKMVNPATGRVHTNYA-QAVAVTGRLSSNDPNLQNIPIRT----- 675 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A G +V AD + IE R++A I+ ++ + Sbjct: 676 -------------------AEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENML 716 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 KAFAN EDI+ T A+ F ++V EQR KV+ L Y A + Sbjct: 717 KAFANNEDIHRATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLASNLGIERAAA 776 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAV 494 + + ++ + D + ++ LW+ + A+ Sbjct: 777 QMYIDKYFMRFSGVKRYMDETRLQAKARGYVETVFGRRLWLPEINSPNGPRRQGAERAAI 836 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 + GTA +L+K A A + + ++Q+ +L E Sbjct: 837 NAPMQGTAADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELE 886 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + D++ M +++ VHDE+V E P V L LM Sbjct: 841 QGTAADLIKMAMIAVQDWLETNSLQTRMIMQVHDELVLEVPQQELEMVREKLPELM 896 >gi|237507804|ref|ZP_04520519.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] gi|235000009|gb|EEP49433.1| DNA polymerase I [Burkholderia pseudomallei MSHR346] Length = 923 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 198/611 (32%), Gaps = 125/611 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60 D ET S P+ A I +++ + MP+ L + Sbjct: 351 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D + + ++ + GI + T + + + LAL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K E+ GK F + + EY D + T + Sbjct: 459 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 502 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L P D E + L+ + + G ID D + + IA L+ Sbjct: 503 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 562 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ L G + + F + +V + S + +LA+D L + Sbjct: 563 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 620 Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 678 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 679 -----------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 775 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490 L + ++ + + + + + LW+ + Sbjct: 776 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 835 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGG 536 A+ + GTA +L+K + A + ++Q+ +L +V+E Sbjct: 836 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 895 Query: 537 SISARRVANVP 547 VA + Sbjct: 896 PEMMCGVAKLK 906 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|327478747|gb|AEA82057.1| DNA polymerase I [Pseudomonas stutzeri DSM 4166] Length = 914 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 101/581 (17%), Positives = 193/581 (33%), Gaps = 113/581 (19%) Query: 7 DIETRSPQPLPK---VGVWAYAE--QAVITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQY 60 D ET S + VGV E QA +++ P +L D + P Sbjct: 340 DTETTS-LDAQRAELVGVSFAVEPGQAAYVPLRHSYMGVPQQLELDAVLGALKP-----L 393 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFS 119 L D + + ++ + GI++ + T + + + LAL + Sbjct: 394 LEDPAKTKICQHGKYDMNVL-MHYGIEMRGMAF-DTMLESYVLDATATRHDMDSLALKYL 451 Query: 120 EHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 T + GK F + +I + G Y D + T L + Sbjct: 452 GRGTIRFEDIAGKGAKQLTFDQIAI----------------EQAGPYAAEDADVTLRLHQ 495 Query: 176 RLI-----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L+ L++ E L + I G +D L+ + + + +L+ + Sbjct: 496 TLLGKLEQTPSLLKVLTEIEMPLVPVLARIERNGALVDAQLLGQQSVELGDKLVQLEREA 555 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + + L L+ G ++ + G S +D L ++ Sbjct: 556 FDIAGEEF-NLGSPKQLCAILYDKLGCPVISKTAGGQPSTAESVLAELAEQDYPLPKVIM 614 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 615 QHRSLSKLKGTYTDKLPQQINPRTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT---- 669 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A+ G KL+ AD + IE R++A +A + Sbjct: 670 --------------------AEGRRIRQAFVAAPGYKLLAADYSQIELRIMAHLAQDAGL 709 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF N D++ T A+ F P+++VS +QR K + L Y AK Sbjct: 710 LHAFQNDLDVHRATAAEVFGVPLEQVSNDQRRSAKAINFGLIYGMSAFGLAKQIDVGRKE 769 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + ++ + + + S + M+ A Sbjct: 770 AQEYIDRYFARYPGVLAYMERTRTQAAEQGYVETLFGRRLYLPEINSKNGAMRKGAERTA 829 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + + GTA +++K+A A + +LQ+ +L Sbjct: 830 INAPMQGTAADIIKRAMIAVDGWLQDSGLDARVILQVHDEL 870 >gi|170724430|ref|YP_001758456.1| DNA polymerase I [Shewanella woodyi ATCC 51908] gi|169809777|gb|ACA84361.1| DNA polymerase I [Shewanella woodyi ATCC 51908] Length = 945 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 110/560 (19%), Positives = 194/560 (34%), Gaps = 100/560 (17%) Query: 4 LFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + ID ET S L + +A A+ + D P +L D A+ + L Sbjct: 368 IAIDTETTSLDYMTAKLVGISFAVEVGKAAYLPLAHDYLDAPEQL-DF--DEAI-AKLKP 423 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-TNGLPSSLKNACLALNF 118 L D + V N ++ +F +GI + + T + + N + S LAL + Sbjct: 424 LLEDPKLKKVGQNLKYDISIFAN-VGIKLQGVAF-DTMLESYVFNSVASKHNMDDLALKY 481 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + +++ Y D + T L Sbjct: 482 LGHKNISFEEIAGKGAKQLTFNQIDLETAA----------------PYAAEDADITLRLH 525 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L +D E L + I +G ID ++ + + IA KL++D Sbjct: 526 QHLWARLEKEPKLASVFTDIELPLVQVLSKIERQGVLIDSMMLGQQSQEIAISIDKLEQD 585 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ S L+ F G ++ + S + +LA D L ++ Sbjct: 586 AFEIAGETFNLS-SPKQLQALFFEKLGYPVIKKTPKGAPSTAEE-VLVELALDYPLPKII 643 Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V++ GR+ + A+ TGR S QN+P + Sbjct: 644 LQHRSLAKLKSTYTDKLPLMVNAQSGRVHTSYHQANAA-TGRLSSSEPNLQNIPIRT--- 699 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA GKK++ AD + IE R++A ++ + Sbjct: 700 ---------------------EEGRRIRHAFIAQEGKKVLAADYSQIELRIMAHLSQDKG 738 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AFA G+DI+ T A+ F +V+ EQR K + L Y A+ Sbjct: 739 LLTAFAEGKDIHKATAAEVFGVDFSEVTTEQRRRAKAVNFGLIYGMSAFGLARQLDIPRG 798 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + +AE+ + + Sbjct: 799 EAQKYIDTYFDRYPGVLKYMEDTRAEAADLGYVSTLYGRRLYLPAIKDRNAMRRQAAERA 858 Query: 493 AVKDKLIGTACELVKKAWRA 512 A+ + GTA +++KKA Sbjct: 859 AINAPMQGTAADIIKKAMIN 878 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%) Query: 603 QAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M N T +++ VHDE+V E ++ +C +M Sbjct: 865 QGTAADIIKKAMINIASWIESETHGEITMIMQVHDELVFEVDSDKAEALKEQICKMMADA 924 Query: 655 PSWAKGLPLKAEG 667 S + L AEG Sbjct: 925 VS--LDVELLAEG 935 >gi|254373514|ref|ZP_04989001.1| hypothetical protein FTCG_01467 [Francisella tularensis subsp. novicida GA99-3549] gi|254374976|ref|ZP_04990456.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] gi|151571239|gb|EDN36893.1| hypothetical protein FTCG_01467 [Francisella novicida GA99-3549] gi|151572694|gb|EDN38348.1| hypothetical protein FTDG_01158 [Francisella novicida GA99-3548] Length = 897 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 99/553 (17%), Positives = 187/553 (33%), Gaps = 79/553 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L + D + VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 A---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVE 168 + L + GK Y A+ + + F ++D Sbjct: 431 SKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQD-- 488 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ +L + E L ++ + G +ID +++ + K+L+ L Sbjct: 489 ---KVLYKLY--CELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKELESKCYNLA 543 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 S LR LF G+ V + + S + QLA+D + L Sbjct: 544 GQEFNLS-SPVQLREILFEKMGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS--------- 651 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA NG +V AD + IE R++A ++ + +KAF Sbjct: 652 ---------------PEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 DI+ T A+ ID+VS EQR K + L Y A+ + + + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYI 756 Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498 + S + + S ++ ++ A+ + Sbjct: 757 DIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPM 816 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 GTA +++KKA + + Q + ++ + V V + + + Sbjct: 817 QGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEEIVAKI 869 Query: 559 HIVLPSSRRLVYS 571 ++ ++ +L Sbjct: 870 KSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|53716619|ref|YP_105127.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121597404|ref|YP_991095.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|124381759|ref|YP_001025495.1| DNA polymerase I [Burkholderia mallei NCTC 10229] gi|126446346|ref|YP_001077557.1| DNA polymerase I [Burkholderia mallei NCTC 10247] gi|167000295|ref|ZP_02266114.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|238561508|ref|ZP_00441953.2| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|254177233|ref|ZP_04883889.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|254203066|ref|ZP_04909428.1| DNA polymerase I [Burkholderia mallei FMH] gi|254208399|ref|ZP_04914748.1| DNA polymerase I [Burkholderia mallei JHU] gi|254359414|ref|ZP_04975686.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|52422589|gb|AAU46159.1| DNA polymerase I [Burkholderia mallei ATCC 23344] gi|121225202|gb|ABM48733.1| DNA polymerase I [Burkholderia mallei SAVP1] gi|126239200|gb|ABO02312.1| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10247] gi|147746111|gb|EDK53189.1| DNA polymerase I [Burkholderia mallei FMH] gi|147751086|gb|EDK58154.1| DNA polymerase I [Burkholderia mallei JHU] gi|148028601|gb|EDK86561.1| DNA polymerase I [Burkholderia mallei 2002721280] gi|160698273|gb|EDP88243.1| DNA polymerase I [Burkholderia mallei ATCC 10399] gi|238524488|gb|EEP87921.1| DNA polymerase I [Burkholderia mallei GB8 horse 4] gi|243063777|gb|EES45963.1| DNA polymerase I [Burkholderia mallei PRL-20] gi|261826488|gb|ABN00542.2| DNA-directed DNA polymerase [Burkholderia mallei NCTC 10229] Length = 926 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 198/611 (32%), Gaps = 125/611 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60 D ET S P+ A I +++ + MP+ L + Sbjct: 354 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 403 Query: 61 ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D + + ++ + GI + T + + + LAL Sbjct: 404 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 461 Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K E+ GK F + + EY D + T + Sbjct: 462 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 505 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L P D E + L+ + + G ID D + + IA L+ Sbjct: 506 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 565 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ L G + + F + +V + S + +LA+D L + Sbjct: 566 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 623 Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 624 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 681 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 682 -----------------------TEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 718 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 719 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 778 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490 L + ++ + + + + + LW+ + Sbjct: 779 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 838 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGG 536 A+ + GTA +L+K + A + ++Q+ +L +V+E Sbjct: 839 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 898 Query: 537 SISARRVANVP 547 VA + Sbjct: 899 PEMMCGVAKLK 909 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 818 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 868 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 869 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 903 >gi|53722791|ref|YP_111776.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134278161|ref|ZP_01764875.1| DNA polymerase I [Burkholderia pseudomallei 305] gi|52213205|emb|CAH39245.1| DNA polymerase I [Burkholderia pseudomallei K96243] gi|134249945|gb|EBA50025.1| DNA polymerase I [Burkholderia pseudomallei 305] Length = 923 Score = 276 bits (706), Expect = 8e-72, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 198/611 (32%), Gaps = 125/611 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60 D ET S P+ A I +++ + MP+ L + Sbjct: 351 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 400 Query: 61 ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D + + ++ + GI + T + + + LAL Sbjct: 401 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 458 Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K E+ GK F + + EY D + T + Sbjct: 459 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 502 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L P D E + L+ + + G ID D + + IA L+ Sbjct: 503 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 562 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ L G + + F + +V + S + +LA+D L + Sbjct: 563 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 620 Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 621 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 678 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 679 -----------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 715 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 716 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 775 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490 L + ++ + + + + + LW+ + Sbjct: 776 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 835 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGG 536 A+ + GTA +L+K + A + ++Q+ +L +V+E Sbjct: 836 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 895 Query: 537 SISARRVANVP 547 VA + Sbjct: 896 PEMMCGVAKLK 906 Score = 44.3 bits (103), Expect = 0.060, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|256112629|ref|ZP_05453550.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 696 Score = 276 bits (705), Expect = 9e-72, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 109 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 158 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 159 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 215 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 216 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 260 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 261 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 320 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 321 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 378 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 379 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 438 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 439 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 474 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 475 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 534 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 535 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 594 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 595 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 654 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 655 NEVEKTIPVVRRVME 669 >gi|299771514|ref|YP_003733540.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] gi|298701602|gb|ADI92167.1| DNA polymerase I(POL I) [Acinetobacter sp. DR1] Length = 923 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 105/573 (18%), Positives = 196/573 (34%), Gaps = 112/573 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAQDAYYVPLAHNYENAPQQL----DRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + Y Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAE 499 Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214 D T L++ +L P + E L+ ++ + + G R+D + KL A Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFA 559 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + L+ +++ D + + LF GI + T + S S + ++ Sbjct: 560 KTMEGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617 Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L G A LK + L E +D T + TGR S QN+P Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G+ L+ AD + IE R++A Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 + +D + AF +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 714 FSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 ++Q+ Q + ++ ++ ++ Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +++K A + + + Sbjct: 834 KAAERAAINAPLQGSAADIIKIAMIEVDKILPK 866 >gi|325124582|gb|ADY84105.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter calcoaceticus PHEA-2] Length = 923 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 104/573 (18%), Positives = 196/573 (34%), Gaps = 112/573 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRD 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + Y Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAE 499 Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214 D T L++ +L P + E L+ ++ + + G R+D + KL A Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFA 559 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + L+ +++ D + + LF GI + T + S S + ++ Sbjct: 560 KTMEGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617 Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L G A LK + L E +D T + TGR S QN+P Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G+ L+ AD + IE R++A Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 + ++ + AF +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 714 FSQDEALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 ++Q+ Q + ++ ++ ++ Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +++K A + + + Sbjct: 834 KAAERAAINAPLQGSAADIIKLAMIEVDKILPK 866 >gi|167577153|ref|ZP_02370027.1| DNA polymerase I [Burkholderia thailandensis TXDOH] Length = 926 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 117/605 (19%), Positives = 207/605 (34%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 354 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + + ++ + GI + T + + + LAL Sbjct: 410 DASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVR 467 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + + EY D + T +L L Sbjct: 468 TIKYEDVAGKGAQQIGFDEVPL----------------EQASEYAAEDADITLQLHHALY 511 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA +L++ L Sbjct: 512 PQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDTDRLGRQSSEIATRLIELEQQAYGL 571 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 572 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 629 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 630 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 681 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G K+V AD + IE R++A I+ ++ ++A Sbjct: 682 -----------------AEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRA 724 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FANGEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 725 FANGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 784 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + +A + LW+ + A+ Sbjct: 785 YIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 844 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ EG +V+E Sbjct: 845 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEGELSIVREKLPEMMCG 904 Query: 543 VANVP 547 VA + Sbjct: 905 VAKLK 909 >gi|301154826|emb|CBW14289.1| fused DNA polymerase I 5'->3' exonuclease/3'->5' polymerase/3'->5' exonuclease [Haemophilus parainfluenzae T3T1] Length = 932 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 104/550 (18%), Positives = 185/550 (33%), Gaps = 78/550 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + T+ V N ++ +F + GID+ + T + + LA Sbjct: 411 LKPILENPTIQKVGQNFKYDLTIFARN-GIDVQGVAF-DTMLESYVLNSTGRHNMDDLAK 468 Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H T E GK F + ++ V + K E T E Sbjct: 469 RYLGHQTISFEEIAGKGKNQLTFNQIQLEQAAEYAAEDADVTMKLQQVLWEKLSKEPTLE 528 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 +L + E L + + RG ID D + IA +L+E L Sbjct: 529 ---KLFK--EMELPLLGVLSRMERRGVLIDSDALFLQSNEIANRLSELEEQAYVLAGQPF 583 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L+ LF G+ ++ + S + + +LA L ++ + KL Sbjct: 584 NLA-STKQLQEILFDKLGLPVIQKTPKGAPST-NEEVLEELAFSHELPKVLVEHRGLSKL 641 Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + V+ GR+ + + TGR S QN+P + Sbjct: 642 KSTYTDKLPQMVNPQTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR------------- 687 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R IA G +V AD + IE R++A ++ + I AF G+ Sbjct: 688 -----------NEEGRRIRQAFIAREGFTVVAADYSQIELRIMAHLSQDQGLINAFTQGK 736 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQF 462 DI+ +T A+ F +D+V+ EQR K + L Y A + + + + Sbjct: 737 DIHRSTAAEIFGVALDEVTSEQRRNAKAINFGLIYGMSAFGLSRQLSIGRADAQSYMDLY 796 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + TF S + + A+ + GT Sbjct: 797 FKRYPGVQTFMHDIREKAKAQGYVETLFGRRLYLPDINSSNGMRRKAAERVAINAPMQGT 856 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A +++K+A Q + A ++Q + V V + + + + Sbjct: 857 AADIIKRAMIQLDQKL-----QNDPDIAMIMQ----VHDELVFEVRSEKVEFYSKLIKTH 907 Query: 562 LPSSRRLVYS 571 + S+ LV Sbjct: 908 MESAADLVVP 917 >gi|298293825|ref|YP_003695764.1| DNA polymerase I [Starkeya novella DSM 506] gi|296930336|gb|ADH91145.1| DNA polymerase I [Starkeya novella DSM 506] Length = 981 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 95/506 (18%), Positives = 169/506 (33%), Gaps = 90/506 (17%) Query: 52 AMPSD---LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 +P + + V+ + N ++ ++ K+ LGI++ G Sbjct: 447 PIPDAVAAIKPLMEHPGVLKIGQNLKYDWLILKR-LGIELGPYDDTMLVSYVLDAGASPH 505 Query: 109 LKNACLALNFSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + K EE GK KG I +A Y D Sbjct: 506 GMDPLSMRWLGHTPIKFEEVCGK------GKGQICFDRAAIDKATD---------YAAED 550 Query: 167 VEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L++ L P ER L + + +RG ID ++ +L AQ Sbjct: 551 ADVTLRLWRVLKPRLAAEGKTTVYETLERPLVTVLAQMEERGITIDRQMLSRLSGEFAQG 610 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 +L+ +I ++ + L LF I + T + +LA+ Sbjct: 611 MGRLEAEISEMAGETF-NPGSPKQLGDILFGKMQIPGGRKTP-TGAWSTGADVLEELAEQ 668 Query: 277 -LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L R + KL + L V+ GR+ + A+ TGR S QN Sbjct: 669 GHELPRRILDWRQLQKLKSTYTDALPTYVNKETGRVHTSFAL-AATTTGRLSSSEPNLQN 727 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R IA+ G KLV AD + IE R+L Sbjct: 728 IPVRT------------------------EEGRKIRKAFIAAPGHKLVSADYSQIELRLL 763 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A IA +AF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 764 AEIADTPSLRQAFQDGLDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLA 823 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLW 484 G ++++ + + D + + + Sbjct: 824 NQLSIPREEAGAYIKRYFERFPGIRAYMDETRNFAREHGYVETLFGRRCHYPDISAKNPS 883 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAW 510 ++ A+ +L G+A +++++A Sbjct: 884 IRAFNERAAINARLQGSAADIIRRAM 909 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 603 QAISRDILCEGMKN----ATKNGY--DIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655 Q + DI+ M K G ++L VHDE++ E PD ++ + M P Sbjct: 898 QGSAADIIRRAMARMDAALEKAGLSARMLLQVHDELIFEVPDDEIAATIPVVRETMELAP 957 >gi|187478878|ref|YP_786902.1| DNA polymerase I [Bordetella avium 197N] gi|115423464|emb|CAJ49998.1| DNA polymerase I [Bordetella avium 197N] Length = 904 Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats. Identities = 96/540 (17%), Positives = 182/540 (33%), Gaps = 94/540 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L +L D T + H++ ++ +F GI + T + A + L Sbjct: 383 ERLRGWLEDATRSKLLHHAKYDTHVFANE-GIALRGV-TEDTMLQAYVLESHRGVGLNDL 440 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A + G++ + C +D + G Y D + T + Sbjct: 441 AQRYL--------GRSGVNYEDLCGKGAKQIGFDEVAVD------RAGFYAAEDADFTLQ 486 Query: 173 LFKRLIP--------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L + L P + E ++ + I G ++D + + + + +E L++ Sbjct: 487 LHQALRPGVTGELERIYKLELEVSRVLVAIERNGVKVDAEELGRQSHELGREMLALEQRA 546 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + L LF G+ +V + G S +++LA+D L ++ Sbjct: 547 YELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPST-DEEVLSKLAQDYPLPQVLL 604 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ A TGR + QN+P + + Sbjct: 605 EYRGLSKLKSTYTDKLPRMINPATGRVHTHYS-QAAVITGRLASSDPNLQNIPVRTLA-- 661 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR +A LV AD + IE R++A ++ + Sbjct: 662 ----------------------GRRVREAFVADGDGLLVSADYSQIELRIMAHVSDDANL 699 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +AFA GEDI+ T A+ F P+ +V+ EQR K + L Y G A Sbjct: 700 QRAFAAGEDIHRATAAEVFGVPLPEVTSEQRRAAKAINFGLIYGMGVFGLASNLGITRDA 759 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ + + D + + + A Sbjct: 760 AQAYIDRYFARYPGVARYMDDTRRLAREQGYVETVFGRRLQLPDIRAASGPRRQGAERAA 819 Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + GTA +L+K A R + ++Q+ +L V + + R+ Sbjct: 820 INAPMQGTAADLIKMAMVAVQDWLVSQRLSARLIMQVHDELVLEVPAVELDLVRETVPRL 879 >gi|254292552|ref|YP_003058575.1| DNA polymerase I [Hirschia baltica ATCC 49814] gi|254041083|gb|ACT57878.1| DNA polymerase I [Hirschia baltica ATCC 49814] Length = 956 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 98/552 (17%), Positives = 180/552 (32%), Gaps = 105/552 (19%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKK----TLGIDIPSKRWICTSVLARTN--GLPSSLK 110 L L D T++ V N ++ +F + L I T +L+ G + Sbjct: 424 LKPMLEDPTILKVGQNFKYDVNVFHRAGEKFLDEPIIPYPIDDTMLLSAALEAGQHNHGM 483 Query: 111 NACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + L+F +E GK I F K + + T+ Y D Sbjct: 484 DVLSELHFDHKPIPFKEVAGTGKKQIT-FDKVPVP----EATK------------YAAED 526 Query: 167 VEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T L+ L P ER + + + G ++ + + +L AQ Sbjct: 527 ADVTLRLWALLKPRLSAEGMATLYETIERPMVPVVAQMERAGIFVERETLSRLSGDFAQR 586 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + + + +L + L LF + ++ T + LA + Sbjct: 587 MAQYEAEAYELAGREF-NMGSPKQLGEILFGEMELPGGKKTK-TGAWATGADALEDLAAE 644 Query: 277 -LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 L ++ ++ KL + L E ++ GR+ + GA +TGR S QN Sbjct: 645 GHELPKILLGWRSLSKLKSTYTDALGECINAETGRVHTSFNLVGA-QTGRLSSSDPNLQN 703 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R+ +A G L+ AD + IE R+L Sbjct: 704 IPIRT------------------------EEGRKIRAAFVAQEGNVLIAADYSQIELRLL 739 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A I D AF N DI+ T ++ F PI+ + R K + + Y G A Sbjct: 740 AHIGNIDTLKDAFNNDLDIHAMTASEMFGVPIEGMDPMIRRKAKAINFGIIYGISAFGLA 799 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM--------- 485 + ++ ++ + D E A +WM Sbjct: 800 RQLGIPRGEASEYIKAYNAKFPGILKYMDEMKAFAREKGYVETAFGRRIWMKGINGKGPE 859 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 + A+ L G+A +++K+A + + +LQ+ +L E Sbjct: 860 RGFAERQAINAPLQGSAADIIKRAMVKMPAALEKSGLQAKMLLQVHDELIFEAPKAEAEK 919 Query: 536 GSISARRVANVP 547 +++ Sbjct: 920 TIKLVKKIMETA 931 >gi|312958179|ref|ZP_07772702.1| DNA polymerase A [Pseudomonas fluorescens WH6] gi|311287610|gb|EFQ66168.1| DNA polymerase A [Pseudomonas fluorescens WH6] Length = 931 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 90/561 (16%), Positives = 193/561 (34%), Gaps = 111/561 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +A+ + + D+ ++ + L L D T + + ++ F+ + Sbjct: 374 AAYIPLTHAY----IGVPDQLDRDTVLRALKPLLEDPTKLKIGQHAKFDMNILANCAIDG 429 Query: 88 IPSKRWI------CTSVLARTNGLPS-SLKNACLALNFSEHLT---KMEEGKALIAR-FC 136 P++ T + + + LA + ++ T + GK F Sbjct: 430 DPAQGITVQGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVSFQDIAGKGAKQLTFD 489 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL------IP-----LSDGER 185 + ++ + G Y D + T L + L IP L+D E Sbjct: 490 QIAL----------------EQAGPYAAEDADVTLRLHQELHAQLAAIPSLASVLTDIEM 533 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I +G +D L+ + + +L+ ++ + L L Sbjct: 534 PLVPVLARIERQGALVDAQLLGVQSIELGNKMVELERQAFEIAGEAF-NLGSPKQLGAIL 592 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKLNT-----LSEAV 299 + G+ ++ + G ++ + + +LA+D L ++ ++ KL + L E + Sbjct: 593 YEKLGMPVLKKT-GKGQASTAEDVLAKLAEDDYPLPKVLMQYRSMSKLKSTYTDRLPEQI 651 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 652 NPRTGRIHTSY-HQAVAATGRLSSSDPNLQNIPVRT------------------------ 686 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G KL+ AD + IE R++A ++ ++ + AF + D++ T A+ F Sbjct: 687 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLSKDEGLMNAFRHNLDVHTATAAEVFK 746 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED 474 + +V+ +QR K + L Y GA+ + + + + Sbjct: 747 VELGEVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDVYFARYPGVREYME 806 Query: 475 WEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAK 513 +A++ + + A+ + GTA +++KKA Sbjct: 807 RTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAAAERTAINAPMQGTAADIIKKAMVRV 866 Query: 514 H----------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 867 DNWLTASGLDAKVILQVHDEL 887 >gi|52424280|ref|YP_087417.1| DNA polymerase I [Mannheimia succiniciproducens MBEL55E] gi|52306332|gb|AAU36832.1| PolA protein [Mannheimia succiniciproducens MBEL55E] Length = 965 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 93/525 (17%), Positives = 174/525 (33%), Gaps = 74/525 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L L + + + N ++ +F GI++ + T + + L Sbjct: 442 SQLKPLLENPEIKKIGQNIKYDLTIFANN-GINMQGVTF-DTMLESYVLNSTGRHNMDDL 499 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 A + H T E GK F + + V + R+V + Sbjct: 500 AERYLGHHTIAFEDIAGKGKNQLTFDQIELKKAAEYAAEDADVTMKLHQTLW--REVAQS 557 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 EL K + E L + I G ID +L + +Q+ L+ +L Sbjct: 558 PELVKL---YQEMELPLVSVLSRIERNGVLIDSRALLAQSKEFSQKLTALENKAHELAGQ 614 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + T L+ LF G+ ++ + S + + +LA + L +L + Sbjct: 615 HFNLA-STKQLQEILFDKLGLPVLKKTPKGAPST-NEEVLEELAYEHELPKLLVEHRGLS 672 Query: 291 KL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + V+ GR+ + + TGR S QN+P Sbjct: 673 KLKSTYTDKLPQMVNRKTGRVHTSY-HQAVTATGRLSSSDPNLQNIP------------- 718 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G K++ AD + IE R++A ++ + AF+ Sbjct: 719 -----------VRNEEGRRIRQAFIARKGFKVIAADYSQIELRIMAHLSADKGLTAAFSE 767 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G+DI+ +T A+ F ++ V+ EQR K + L Y ++ + Sbjct: 768 GKDIHRSTAAEIFGLALENVTAEQRRSAKAINFGLIYGMSSFGLSRQLGIARGDAQRYMD 827 Query: 461 QFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLI 499 + Q TF +S + + A+ + Sbjct: 828 LYFQRYPGVQTFMTNIREKAKSQGYVETLFGRRLYLPDIQSANAMRRKAAERVAINAPMQ 887 Query: 500 GTACELVKKAWRAKHQGVLQ-----LWKDLTEGFACVVQEGGSIS 539 GTA +++K+A + + + + + V+E Sbjct: 888 GTAADIIKRAMIDIDKAITDDPDILMIMQVHDELVFEVKEDKIEH 932 Score = 40.5 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 15/117 (12%) Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V + + K ++ RRL D++ + R Sbjct: 834 PGVQTFMTNIREKAKSQGYVETLFGRRLYLPDIQSANAM---RRKAAERVAINAP----- 885 Query: 601 IVQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q + DI+ M + K +++ VHDE+V E + + SLM Sbjct: 886 -MQGTAADIIKRAMIDIDKAITDDPDILMIMQVHDELVFEVKEDKIEHYSALIKSLM 941 >gi|265994070|ref|ZP_06106627.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] gi|262765051|gb|EEZ10972.1| DNA polymerase I [Brucella melitensis bv. 3 str. Ether] Length = 688 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 107/615 (17%), Positives = 199/615 (32%), Gaps = 127/615 (20%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-------------Q 50 L D ET S P+ QA + + A + Sbjct: 101 LAFDTETTSLDPM----------QAELVGFSLALAPGKAAYVPLQHKSGAGDLLGGGMVE 150 Query: 51 SAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG- 104 + +P D L + L D +++ +A N ++ ++ ++ I + + T +++ Sbjct: 151 NQIPLDMALAALKRVLEDASILKIAQNMKYDWLVMRRH---GINAVSFDDTMLISYVLDA 207 Query: 105 LPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ + H K G K ++ D RA Sbjct: 208 GTGSHGMDPLSERWLGHTPIAYKDVAGS------GKSAVTFDMVDIDRATA--------- 252 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER L + + +RG +D ++ +L Sbjct: 253 YAAEDADVTLRLWQVLKPRLAAEGLMSVYERLERPLVDVLARMEERGIAVDRQVLSRLSG 312 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ +++I L L LF G+ ++ T + S + Sbjct: 313 DLAQAAAAYEDEIYALAGEKFTI-GSPKQLGDILFGKMGLPGASKTK-TGQWSTSAQVLE 370 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 LA + L R + KL + L ++ + T ++ TGR S Sbjct: 371 DLAAEGHPLPRKIVDWRQLTKLKSTYTDALPGFINPQTKRVHTSYAMASTSTGRLSSSDP 430 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R+ IA G KL+ AD + IE Sbjct: 431 NLQNIPVRT------------------------AEGRKIRTAFIAEPGNKLISADYSQIE 466 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +A +AFA+G DI+ T ++ F P++ + E R K + + Y Sbjct: 467 LRVLAHVADIAQLKQAFADGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISA 526 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G A G ++ + + + + + + Sbjct: 527 FGLANQLSIPREEAGQYIRTYFERFPGIKDYMEATKAFAREHGYVETIFGRRAHYPDIRA 586 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC 530 + ++ A+ + G A +++++A + +LQ+ +L Sbjct: 587 SNPQVRAFNERAAINAPIQGAAADIIRRAMIRMEDALAKENLAARMLLQVHDELIFEVPE 646 Query: 531 VVQEGGSISARRVAN 545 E RRV Sbjct: 647 NEVEKTIPVVRRVME 661 >gi|126456399|ref|YP_001076435.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242312260|ref|ZP_04811277.1| DNA polymerase I [Burkholderia pseudomallei 1106b] gi|126230167|gb|ABN93580.1| DNA polymerase I [Burkholderia pseudomallei 1106a] gi|242135499|gb|EES21902.1| DNA polymerase I [Burkholderia pseudomallei 1106b] Length = 923 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + L +L Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----SDEVLAKLTPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|167829103|ref|ZP_02460574.1| DNA polymerase I [Burkholderia pseudomallei 9] Length = 923 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGGSISARR 542 + GTA +L+K + A + ++Q+ +L +V+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|76818134|ref|YP_336009.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|254186142|ref|ZP_04892660.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254264752|ref|ZP_04955617.1| DNA polymerase I [Burkholderia pseudomallei 1710a] gi|76582607|gb|ABA52081.1| DNA polymerase I [Burkholderia pseudomallei 1710b] gi|157933828|gb|EDO89498.1| DNA polymerase I [Burkholderia pseudomallei Pasteur 52237] gi|254215754|gb|EET05139.1| DNA polymerase I [Burkholderia pseudomallei 1710a] Length = 923 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + L +L Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----SDEVLAKLTPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVALEQEAYAL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 44.7 bits (104), Expect = 0.056, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|167907515|ref|ZP_02494720.1| DNA polymerase I [Burkholderia pseudomallei NCTC 13177] gi|217422462|ref|ZP_03453965.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] gi|254184913|ref|ZP_04891502.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|184215505|gb|EDU12486.1| DNA polymerase I [Burkholderia pseudomallei 1655] gi|217394693|gb|EEC34712.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 576] Length = 923 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGGSISARR 542 + GTA +L+K + A + ++Q+ +L +V+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|254369803|ref|ZP_04985813.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] gi|157122762|gb|EDO66891.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC022] Length = 897 Score = 275 bits (704), Expect = 1e-71, Method: Composition-based stats. Identities = 103/558 (18%), Positives = 187/558 (33%), Gaps = 89/558 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + EHL +IA K D ++ +Y D + T LF Sbjct: 431 S---KEHLGIEPIAYTVIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478 Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L ++ + G +ID +++ + K+L+ Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 L S LR LF G+ V + + S + QLA+D + L Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +G +V AD + IE R++A ++ + Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +KAF DI+ T A+ ID+VS EQR K + L Y A+ + + Sbjct: 692 LKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + S + + S ++ ++ A Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++KKA + + Q + ++ + V V + + Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864 Query: 554 HKRDVHIVLPSSRRLVYS 571 + ++ ++ +L Sbjct: 865 IVAKIKSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|126443368|ref|YP_001063539.1| DNA polymerase I [Burkholderia pseudomallei 668] gi|126222859|gb|ABN86364.1| DNA-directed DNA polymerase [Burkholderia pseudomallei 668] Length = 923 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------TEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGGSISARR 542 + GTA +L+K + A + ++Q+ +L +V+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|118498168|ref|YP_899218.1| DNA polymerase I [Francisella tularensis subsp. novicida U112] gi|194324341|ref|ZP_03058114.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] gi|118424074|gb|ABK90464.1| DNA polymerase I [Francisella novicida U112] gi|194321406|gb|EDX18891.1| DNA polymerase I [Francisella tularensis subsp. novicida FTE] Length = 897 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 99/553 (17%), Positives = 187/553 (33%), Gaps = 79/553 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L + D + VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKRLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 A---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVE 168 + L + GK Y A+ + + F ++D Sbjct: 431 SKEHLGIEPIAYTAIAGTGKQQQTLDQVDIEIVAKYAAEDADITFRLFNHFKALLEQD-- 488 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ +L + E L ++ + G +ID +++ + K+L+ L Sbjct: 489 ---KVLYKLY--CELEMPLTIILNQMEKTGVKIDAAKLIQQSVSLETSIKELESKCYNLA 543 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 S LR LF G+ V + + S + QLA+D + L Sbjct: 544 GQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 602 LSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS--------- 651 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA NG +V AD + IE R++A ++ + +KAF Sbjct: 652 ---------------PEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 DI+ T A+ ID+VS EQR K + L Y A+ + + + Sbjct: 697 QNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAEAQEYI 756 Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498 + S + + S ++ ++ A+ + Sbjct: 757 DIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPM 816 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 GTA +++KKA + + Q + ++ + V V + + + Sbjct: 817 QGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEEIVAKI 869 Query: 559 HIVLPSSRRLVYS 571 ++ ++ +L Sbjct: 870 KSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|254193866|ref|ZP_04900298.1| DNA polymerase I [Burkholderia pseudomallei S13] gi|169650617|gb|EDS83310.1| DNA polymerase I [Burkholderia pseudomallei S13] Length = 923 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 44.7 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|325917393|ref|ZP_08179607.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] gi|325536394|gb|EGD08176.1| DNA polymerase I [Xanthomonas vesicatoria ATCC 35937] Length = 926 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 105/577 (18%), Positives = 190/577 (32%), Gaps = 106/577 (18%) Query: 7 DIETRSPQPLPKV--GVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL G+ AE QA + + P +L DRT+ + L L Sbjct: 353 DTETDSLDPLQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQ---ALAQLAPLLT 408 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D + + + ++ + ++ +G ++ Sbjct: 409 DPALRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 468 Query: 123 TKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K E+ GK +F + S++ D TR Y D + T L + L P Sbjct: 469 VKYEDVCGKGAKQIKFAQVSLE----DATR------------YAAEDADITLRLHQVLGP 512 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 D E L + I G +D + + +++ + +L Sbjct: 513 KLSAEPGLERVYRDIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA 572 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L+ LF + V + S + + +A L R+ Sbjct: 573 GRTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRG 630 Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L E + GR+ + GA+ TGR S QN+P + Sbjct: 631 LTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------ 683 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G+KL+ D + IE R++A ++G+ + AF Sbjct: 684 ------------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVSAF 725 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G D++ T A+ F ID VS ++R K + L Y A+ Sbjct: 726 ESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDY 785 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 + + F + + ++ + A+ Sbjct: 786 IALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAP 845 Query: 498 LIGTACELVKKA------WRAKH----QGVLQLWKDL 524 + GTA +++K+A W A+H +LQ+ +L Sbjct: 846 MQGTAADIIKRAMVSVDGWIAEHAQRALMILQVHDEL 882 Score = 41.3 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 55/172 (31%), Gaps = 10/172 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 734 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 793 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 794 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 853 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M + ++L VHDE+V E + + + + M Sbjct: 854 IKRAMVSVDGWIAEHAQRALMILQVHDELVFEADIDFVDTLLSEVTARMATA 905 >gi|330806700|ref|YP_004351162.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374808|gb|AEA66158.1| DNA polymerase I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 922 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 95/592 (16%), Positives = 197/592 (33%), Gaps = 117/592 (19%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD-----LLQYLRDETVMCVAHNSL 74 A+ + + ++A T + D L L + + V ++ Sbjct: 348 AQHSQLVGLSFAVAPYEAAYIPLTHSYMGVPEQLDRDTVLKALKPLLENPNKLKVGQHAK 407 Query: 75 FERILFKKTL-----GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLTKMEE 127 FE + I + ++L + LAL + + Sbjct: 408 FETNILANCAIGGDQNNGILVQGIAFDTMLESYVLDSTATRHDMDSLALKYLGQSKTDFQ 467 Query: 128 ---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179 GK + F + S+ +L G Y D + T L + L Sbjct: 468 DIAGKGVKQLTFDQISL----------------ELAGPYAAEDADVTFRLHQALQEKLAA 511 Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L+D E L + I +G +D +L+ + ++ L+ + + Sbjct: 512 TPSLGTVLNDIEMPLMPVLARIERQGALVDANLLGVQSVELGEKLVALEREAFAIAGEEF 571 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILK 291 + L + L+ G+ ++ + ++ + + + +LA+ D L ++ ++ K Sbjct: 572 -NLGSPKQLGVILYEKLGLPVLSKTAKG-QASTAEAVLAELAEQDYPLPKVLMQYRSLSK 629 Query: 292 LNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E ++S GR+ Q + TGR S QN+P + Sbjct: 630 LKSTYTDRLPEQINSRTGRVHTNYQ-QAVAATGRLSSIDPNLQNIPIRT----------- 677 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G KL+ AD + IE R++A +A ++ + AF + Sbjct: 678 -------------SEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLYAFRHN 724 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ++ V+ +QR K + L Y AK + + Sbjct: 725 LDVHRATAAEVFGVELEAVTLDQRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYIDR 784 Query: 462 FSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIG 500 + + + +A+ + + ++ A+ + G Sbjct: 785 YFARYPGVLAYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPALRKGAERTAINAPMQG 844 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARR 542 TA +++KKA A + +LQ+ +L + + R+ Sbjct: 845 TAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDLVDQVRDEIRQ 896 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ + M + ++L VHDE+V E + V + M+ Sbjct: 843 QGTAADIIKKAMVAVDRWLTTSGLDAKVILQVHDELVLEVREDLVDQVRDEIRQHMSAA 901 >gi|198284771|ref|YP_002221092.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665686|ref|YP_002427456.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] gi|198249292|gb|ACH84885.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517899|gb|ACK78485.1| DNA polymerase I [Acidithiobacillus ferrooxidans ATCC 23270] Length = 899 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 104/598 (17%), Positives = 195/598 (32%), Gaps = 109/598 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSD---- 56 +D ET S PL +A+ I+ CA+ + ++ R + Sbjct: 322 ALDTETTSLDPL-------HADLVGIS-CAWQAGGDYQAVYVPVGHRDAGPQLDRQTVLT 373 Query: 57 -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L +L D +A N+ ++ +F + R + + LA Sbjct: 374 ALRPWLEDPQAAKLAQNAKYDWRVFWRHGIHPAGLARDTLLESYVLNSS-HNGHDLDTLA 432 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + +H I + + A+ A L Y D + + Sbjct: 433 ERYLQHQN--------IRY--EEVVGKGKSARNFADVPVAEAL--PYAAEDADVCLRVDA 480 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P L + E L L+ + + G +ID + L ++++ ++ Sbjct: 481 LLWPRFASEPGLRRVLMEIEMPLVLVLARMEEAGVKIDRAQLEVLSTELSRDMADCEQKA 540 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L + ++ LF + ++ + G S + + QLA L RL Sbjct: 541 FVLAGQSF-NLNSPKQIQEILFDKMRLPVLKKTPGGQPST-NEDVLAQLAVHADLPRLIL 598 Query: 285 SGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + ++ D GR+ Q + TGR S QN+P + Sbjct: 599 DYRGMAKLKNTYADALPQMINPDTGRVHTHFQ-QAVAATGRLSSNDPNLQNIPVRT---- 653 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A G L+ AD + IE R+LA ++G+ Sbjct: 654 --------------------EQGRRIRQAFVAEEGHWLLSADYSQIELRILAHLSGDARL 693 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 ++AFA GEDI+ T A+ F+ + V R K + L Y G A+ + Sbjct: 694 LQAFAEGEDIHAVTAAEVFDLAPEDVDSAARRAAKAINFGLIYGQTPYGLAQQLGIDQAA 753 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493 + ++ + + +A + + + A Sbjct: 754 ARQYMDRYFERYLGVLEYMAQTRALAKKQGYVETLFGRRLYVPEIRSSNPARRTYAERAA 813 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541 + + GTA +L+K A A + +LQ+ +L E + + Sbjct: 814 INAPMQGTAADLIKMAMIAVDAWLQERPERGRMILQVHDELILEVPEAGLEAAKSALK 871 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYF 642 RTY + N +Q + D++ M G ++L VHDE++ E P+ Sbjct: 806 RTYAERAAINAPMQGTAADLIKMAMIAVDAWLQERPERG-RMILQVHDELILEVPEAGLE 864 Query: 643 SVG-TLCSLM 651 + L + M Sbjct: 865 AAKSALKARM 874 >gi|121604384|ref|YP_981713.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] gi|120593353|gb|ABM36792.1| DNA polymerase I [Polaromonas naphthalenivorans CJ2] Length = 941 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 101/600 (16%), Positives = 185/600 (30%), Gaps = 112/600 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD--- 56 +D ET S + A I +++ T +P D Sbjct: 368 AVDTETTSLDEMR----------AQIVGVSFSVTPGEAAYIPLTHDYPSAPEQLPLDEVL 417 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L +L + + N ++R +F GI++ T + + + A L Sbjct: 418 ARLKPWLENPARPKLGQNIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLASL 475 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 A G++ I + + N V EY D + T ++ Sbjct: 476 AER--------HVGRSGINY---EDLCGKGVHQIKFNQVDI-ARAAEYSCEDSDQTLDVH 523 Query: 175 KRLIPLSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + L P L + Q I G ID ++ + + Q +L+ + Sbjct: 524 RVLWPQLQANEKLLFIYQLEMQSSETLYRIERNGVLIDAPMLARQSHELGQRLLQLETEA 583 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ + L F G+ +V + + +LA+D L Sbjct: 584 YEMAGQPF-NLGSPKQLAEIFFDKLGMKVVKKTPSG-ARSTDEDVLEKLAEDHPLPAKLL 641 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L++ + GR+ + TGR S QN+P Sbjct: 642 EHRSLSKLKGTYTDKLAQLANPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIP------- 693 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR +A G + AD + IE R++A I+G++ Sbjct: 694 -----------------VKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESL 736 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF G D++ T A+ F +++VS EQR KV+ L Y AK Sbjct: 737 LHAFTAGLDVHRATAAEVFGVALEQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 796 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ Q + D + + + A Sbjct: 797 AAAYIDRYFQRYPGVKHYMDSTRQLAKEQGYVETVFGRRLLLPEINSPNGPRRAGAERAA 856 Query: 494 VKDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISARRV 543 + + GTA +L+K + Q ++Q+ +L E R+ Sbjct: 857 INAPMQGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVPEAEVEWVRTEIPRL 916 Score = 46.7 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 Q + D++ M K G +++ VHDE+V E P+ V + LM Sbjct: 862 QGTAADLIKLSMVKVQQVLDAEKRGTKMIMQVHDELVFEVPEAEVEWVRTEIPRLMA 918 >gi|293610426|ref|ZP_06692727.1| DNA polymerase I [Acinetobacter sp. SH024] gi|292827658|gb|EFF86022.1| DNA polymerase I [Acinetobacter sp. SH024] Length = 923 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 105/573 (18%), Positives = 195/573 (34%), Gaps = 112/573 (19%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRD 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QILVQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + Y Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAH----------------YAAE 499 Query: 166 DVEATRELFK----RLIPLSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIA 214 D T L++ +L P + E L+ ++ + + G R+D + KL A Sbjct: 500 DAHVTYRLYEVLSNKLKPFPELENILYNIEMPVARILSGMEEDGIRLDHAFLDKLSVEFA 559 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + + L+ +++ D + + LF GI + T + S S + ++ Sbjct: 560 KTMEGLENQAMEIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIE 617 Query: 275 KDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L G A LK + L E +D T + TGR S QN+P Sbjct: 618 HPLAEIILEHRGLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIP 677 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G+ L+ AD + IE R++A Sbjct: 678 IR------------------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAH 713 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 + +D + AF +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 714 FSQDDALVHAFQHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQ 773 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 ++Q+ Q + ++ ++ ++ Sbjct: 774 LGFTRQESQNYIKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVR 833 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +++K A + + + Sbjct: 834 KAAERAAINAPLQGSAADIIKLAMIEVDKILPK 866 >gi|254301196|ref|ZP_04968640.1| DNA polymerase I [Burkholderia pseudomallei 406e] gi|157811158|gb|EDO88328.1| DNA polymerase I [Burkholderia pseudomallei 406e] Length = 923 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 202/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+ + L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEREAYAL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------TEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC----VVQEGGSISARR 542 + GTA +L+K + A + ++Q+ +L +V+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|77918206|ref|YP_356021.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] gi|77544289|gb|ABA87851.1| DNA polymerase I [Pelobacter carbinolicus DSM 2380] Length = 891 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 95/541 (17%), Positives = 180/541 (33%), Gaps = 101/541 (18%) Query: 53 MPSDLLQYL---------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +P L + L D + +A N+ ++ ++ ++ + C ++LA Sbjct: 357 VPEQLDRALVIDKLRPLMADTQLAKIAQNAKYDLLVLRRA---GLEVAGLSCDTMLASYL 413 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 P++ K+ L SE L G + K I + +A Y Sbjct: 414 ANPAA-KSHGLDTLASELLGYRTIGYTEVTGKGKKQIGFEEVEIEKAT---------VYA 463 Query: 164 KRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L +L P E L + + +G RID D + L + Sbjct: 464 TEDADITLRLADKLEPQLAETGQGELFRTVELPLVTVLSDMEWQGVRIDADFLKGLSADM 523 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 L+ +I +L+ + L LF + ++ +T L Sbjct: 524 KTRLATLEGEIHELSGRSF-NVASPKQLGEVLFEHLKLPRGKKTKTG--WSTDVEVLTNL 580 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQP 327 A++ + ++ KL + L + + D GR+ + + TGR S Sbjct: 581 AEEHPIAARVLDYRSVAKLKSTYCDALPKLIHPDTGRIHTSFN-QAVTATGRLSSSDPNL 639 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R + + G L+ AD + +E R Sbjct: 640 QNIPIRT------------------------EEGRRIREAFVPAEGNLLLAADYSQVELR 675 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444 +LA +A E ++FA+GEDI+ T ++ F ++ V+ E R K + + Y Sbjct: 676 ILAHMADEPALKESFAHGEDIHARTASEIFGVFLELVTPEMRRQAKTINFGVLYGMSAFG 735 Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 AK + + F + ++AE+ Sbjct: 736 LAKSLGIARKEAQTYIDNYFARYPKVLEFMEAKKAEAREKQYVTTLLGRRCAVPEIASKN 795 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVV 532 ++ A+ + G+A +++K A H+ VLQ+ +L Sbjct: 796 GAVRGYAERNAINYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQVHDELVFDMPAAE 855 Query: 533 Q 533 Q Sbjct: 856 Q 856 Score = 44.7 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 8/69 (11%) Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS 643 R Y + N +Q + DI+ M K +VL VHDE+V + P + Sbjct: 799 RGYAERNAINYPIQGSAADIIKVAMLRIHERLKAEKLETKMVLQVHDELVFDMPAAEQAA 858 Query: 644 VGTLC-SLM 651 V L M Sbjct: 859 VENLVREQM 867 >gi|226195875|ref|ZP_03791462.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] gi|225932360|gb|EEH28360.1| DNA polymerase I [Burkholderia pseudomallei Pakistan 9] Length = 876 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 304 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 359 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 360 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 417 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 418 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 461 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 462 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 521 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 522 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 579 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 580 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 631 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 632 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 674 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 675 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 734 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 735 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 794 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 795 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 854 Query: 543 VANVP 547 VA + Sbjct: 855 VAKLK 859 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 768 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 818 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 819 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 853 >gi|78049756|ref|YP_365931.1| DNA polymerase I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038186|emb|CAJ25931.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 933 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 98/574 (17%), Positives = 180/574 (31%), Gaps = 100/574 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE QA + + P +L DRT+ + L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQL-DRTQ---ALAQLAPLLT 415 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V + + ++ + ++ +G ++ Sbjct: 416 DPAVRKLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K E+ C P+ + D + T L + L P Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLA 522 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + I G +D + + +++ + +L Sbjct: 523 SEPDLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRS 582 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + V + S + + +A L R+ + K Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAK 640 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E V GR+ + GA+ TGR S QN+P + Sbjct: 641 LRSTYTDKLPEMVHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G+KL+ D + IE R++A ++G+ + AF +G Sbjct: 691 ---------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 735 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 736 ADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + F + + ++ + A+ + G Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K+A + +LQ+ +L Sbjct: 856 TAADIIKRAMVNVDGWIANHAQRAKMILQVHDEL 889 Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M N ++L VHDE+V E + + + + M Sbjct: 861 IKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMA 910 >gi|330826175|ref|YP_004389478.1| DNA polymerase I [Alicycliphilus denitrificans K601] gi|329311547|gb|AEB85962.1| DNA polymerase I [Alicycliphilus denitrificans K601] Length = 921 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 99/583 (16%), Positives = 189/583 (32%), Gaps = 116/583 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP----- 54 ID ET S L A I +++ + + +P Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L +L D + + ++R +F GI++ T + + + A L Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A G+ I+ C P+ + A+ D + T + Sbjct: 456 AER--------HTGRTGISYEDLCGKGAKQIPFSQVPVDKAAAYS------CEDSDQTLD 501 Query: 173 LFKRLIPLSDGERDL---WLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + L P + + L + L+ I G ID D + + Q +L++ Sbjct: 502 VHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQ 561 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + + + L F G+ +V + T + +LA+D L Sbjct: 562 EAYDIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 619 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ KL + L++ GR+ + TGR S QN+P + Sbjct: 620 LLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT-- 676 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + D + IE R++A I+G++ Sbjct: 677 ----------------------PEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDE 714 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 ++AF G D++ T A+ F + +V+ EQR KV+ L Y AK Sbjct: 715 ALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDN 774 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + + ++ Q + +A++ + + Sbjct: 775 TAAKNYIDRYFQRYPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAER 834 Query: 492 FAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 A+ + GTA +L+KKA ++Q+ +L Sbjct: 835 AAINAPMQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDEL 877 >gi|325924860|ref|ZP_08186294.1| DNA polymerase I [Xanthomonas perforans 91-118] gi|325544705|gb|EGD16054.1| DNA polymerase I [Xanthomonas perforans 91-118] Length = 933 Score = 275 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 97/574 (16%), Positives = 180/574 (31%), Gaps = 100/574 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE QA + + P +L DRT+ + L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHHFPGAPAQL-DRTQ---ALAQLAPLLT 415 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V + + ++ + ++ +G ++ Sbjct: 416 DPAVRKLGQHGKYDLHVMRRHGVALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 475 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K E+ C P+ + D + T L + L P Sbjct: 476 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLA 522 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + I G +D + + +++ + +L Sbjct: 523 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRS 582 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + V + S + + +A L R+ + K Sbjct: 583 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAK 640 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E + GR+ + GA+ TGR S QN+P + Sbjct: 641 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 690 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G+KL+ D + IE R++A ++G+ + AF +G Sbjct: 691 ---------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 735 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 736 ADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 795 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + F + + ++ + A+ + G Sbjct: 796 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 855 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K+A + +LQ+ +L Sbjct: 856 TAADIIKRAMVNVDGWIANHAQRAKMILQVHDEL 889 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 55/170 (32%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M N ++L VHDE+V E + + + + M Sbjct: 861 IKRAMVNVDGWIANHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMA 910 >gi|261856277|ref|YP_003263560.1| DNA polymerase I [Halothiobacillus neapolitanus c2] gi|261836746|gb|ACX96513.1| DNA polymerase I [Halothiobacillus neapolitanus c2] Length = 940 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 105/601 (17%), Positives = 188/601 (31%), Gaps = 105/601 (17%) Query: 1 MSKLFIDIETRSPQPL---PKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPS 55 M + D ET S L VGV E A A+ + P +L ++ + + Sbjct: 362 MDWVAFDTETDS-LDLFAGRIVGVSFSIEDNRAAYVPLAHNYPGAPAQL----DRDTVLA 416 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 DL +L D + V N+ F+ + GI + + T + + L + Sbjct: 417 DLKPWLEDASRTKVMQNAKFDSHMLANH-GITLRGVLF-DTMLESYV------LDSTATR 468 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ----AWQLFGEYCKRDVEATR 171 + K + +I A + + G Y D + T Sbjct: 469 HDMDSLAAK---------YLGRSTITFEDIAGKGAKALSFPEIHLEQAGPYAAEDADVTG 519 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L P E+ L + + G R+D + + I + + Sbjct: 520 QLQQCLWPKLSVEPDLRSVYETIEQPLIEVLVAMERAGVRVDRGELAIQGKAIGERIAAV 579 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ K + T L+ LF + + + S + +L L Sbjct: 580 EQAAFKEAGREF-NLGSTKQLKELLFDELKLPVGKKTPKGEPST-DEEALGELVGSHPLP 637 Query: 281 RLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L + KL + L E + + GR+ + TGR S QN+P + Sbjct: 638 ALILDYRGLSKLKSTYIDRLPEDIHTHTGRVHSAF-HQAVTATGRLSSSNPNLQNIPIRS 696 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A G KL+ AD + IE R++A ++ Sbjct: 697 ------------------------EEGRRIRQAFVADPGCKLISADYSQIELRIMAHLSE 732 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 ++ AFA GEDI+ T A+ F +VS QR K + L Y AK Sbjct: 733 DERLCAAFAAGEDIHRATAAEVFGVKEVEVSDNQRRAAKAINFGLIYGMSAFGLAKQLDV 792 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489 + + + + + + S + + Sbjct: 793 PRGEAQAYIDLYFARYPGVAKYMERMRQQARQMGYVETVFGRRLYLPEIHSRNGQRRQYA 852 Query: 490 PEFAVKDKLIGTACELVKKAWRAKH-----QGVLQLWKDLTEGFACVVQEGGSISARRVA 544 A+ + GTA +++K A A H G ++ + + V E + Sbjct: 853 ERTAINAPMQGTAADIIKIAMIALHKLLVVPGRARMILQVHDELIFEVPESDVAEIEPII 912 Query: 545 N 545 Sbjct: 913 R 913 >gi|255067522|ref|ZP_05319377.1| DNA polymerase I [Neisseria sicca ATCC 29256] gi|255048317|gb|EET43781.1| DNA polymerase I [Neisseria sicca ATCC 29256] Length = 952 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 106/594 (17%), Positives = 201/594 (33%), Gaps = 95/594 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 374 TIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 430 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 485 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D Sbjct: 486 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLEAHL-RAQMDA-KQL 543 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ + Sbjct: 544 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAVAGQP 597 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 598 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 656 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 657 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 705 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 706 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 751 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 752 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 811 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 812 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 871 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A K + ++Q+ +L + ++ Sbjct: 872 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQI 925 >gi|257464896|ref|ZP_05629267.1| DNA polymerase I [Actinobacillus minor 202] gi|257450556|gb|EEV24599.1| DNA polymerase I [Actinobacillus minor 202] Length = 950 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 92/558 (16%), Positives = 184/558 (32%), Gaps = 91/558 (16%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L + + + N ++ +F GI++ + T + + T LA Sbjct: 427 QLKPILENPEIKKIGQNIKYDLTVFANH-GINVQGVAF-DTMLESYTLNSTGRHNMDDLA 484 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCKR 165 + H T E GK F + I + T H W + + Sbjct: 485 ERYLGHKTIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLW---SQLAQE 541 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +L + E L + I G ID + + I + +L++++ Sbjct: 542 PALV------KLFD--EIELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVH 593 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLAS 284 + + T L+ LF G+ ++ + S + + +LA + +L Sbjct: 594 SEAGSVFNLA-STKQLQEILFEKLGLPILKKTPKGAAST-NEEVLEELAMMGHRVPKLLI 651 Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 652 EHRGLSKLKSTYTDKLPLMINAKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR----- 705 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G K+V AD + IE R++A +A + Sbjct: 706 -------------------NEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHLANDKGM 746 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +KAFA G+DI+ +T ++ F P+D+V+ EQR K + L Y + + Sbjct: 747 LKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEFGLSNQLGISRAD 806 Query: 455 CGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFA 493 ++ + + F + +S + + A Sbjct: 807 AKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEIKSSNAMRRKAAERVA 866 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++K A + + + ++ + V V + Sbjct: 867 INAPMQGTAADIIKIAMIGIDRVI---------QHSDEIKMIMQVHDELVFEVKEDKVEH 917 Query: 554 HKRDVHIVLPSSRRLVYS 571 + + + + +L Sbjct: 918 YSAVIKAEMEKAIQLNVP 935 >gi|319762006|ref|YP_004125943.1| DNA polymerase i [Alicycliphilus denitrificans BC] gi|317116567|gb|ADU99055.1| DNA polymerase I [Alicycliphilus denitrificans BC] Length = 921 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 99/583 (16%), Positives = 189/583 (32%), Gaps = 116/583 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMP----- 54 ID ET S L A I +++ + + +P Sbjct: 348 AIDTETTSLDELR----------AEIVGISFSVEPGAAAYIPLAHDGPDTPAQLPLAEVL 397 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L +L D + + ++R +F GI++ T + + + A L Sbjct: 398 ARLKPWLEDPKHPKLGQHVKYDRHVFANH-GIEVRGY-VHDTMLQSYVLEVHKPHGLASL 455 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A G+ I+ C P+ + A+ D + T + Sbjct: 456 AER--------HTGRTGISYEDLCGKGAKQIPFSQVPVDKAAAYS------CEDSDQTLD 501 Query: 173 LFKRLIPLSDGERDL---WLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + L P + + L + L+ I G ID D + + Q +L++ Sbjct: 502 VHRVLWPQLEADEKLRGIYALEIACSETLFRIERNGVLIDADRLAAQSHALGQRILQLEQ 561 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + + + L F G+ +V + T + +LA+D L Sbjct: 562 EAYDIAGQPF-NLGSPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAK 619 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 ++ KL + L++ GR+ + TGR S QN+P + Sbjct: 620 LLEHRSLSKLKGTYTDKLAQLADPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT-- 676 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G+ + D + IE R++A I+G++ Sbjct: 677 ----------------------PEGRRVREAFVAPPGRVIASCDYSQIELRIMAHISGDE 714 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 ++AF G D++ T A+ F + +V+ EQR KV+ L Y AK Sbjct: 715 ALLRAFHEGLDVHRATAAEVFGVALGQVTSEQRRYAKVINFGLIYGMSSYGLAKNLGIDN 774 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + + ++ Q + +A++ + + Sbjct: 775 TAAKNYIDRYFQRYPGVWQYMQDTKAQAKARGYVETVFGRRLYLPEINSPNGPRRSAAER 834 Query: 492 FAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 A+ + GTA +L+KKA ++Q+ +L Sbjct: 835 AAINAPMQGTAADLIKKAMVQVQDALDAAKPEVLMIMQVHDEL 877 >gi|304388549|ref|ZP_07370650.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] gi|304337469|gb|EFM03637.1| DNA-directed DNA polymerase I [Neisseria meningitidis ATCC 13091] Length = 975 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 110/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 398 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGHLK 453 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 YL + + + N +++ +F I ++LA +GL L Sbjct: 454 PYLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 509 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 510 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 567 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL++ D Sbjct: 568 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQP 621 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 622 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 680 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 681 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 729 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 730 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 775 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 776 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 835 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 836 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 895 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 896 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 948 >gi|154707059|ref|YP_001423457.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] gi|154356345|gb|ABS77807.1| DNA polymerase I [Coxiella burnetii Dugway 5J108-111] Length = 902 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 109/609 (17%), Positives = 206/609 (33%), Gaps = 110/609 (18%) Query: 1 MSKLF------IDIET--RSPQPLPKVGVWAYAEQA---VITLCAYAWDDEPVKLWDRTE 49 M KL D ET + VGV ++A + + P +L + Sbjct: 317 MKKLADAKVFAFDTETTDFNAIQAKLVGV-SFAVSPHEAAYVPLWHDYTGAPAQL----D 371 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPS 107 + + +L L D + N ++ + K G+ I +K + ++LA N + Sbjct: 372 KEEVLRELKPLLEDPNKTIICQNLKYDAEVLAKE-GLTIRAKTY--DTLLASYVLNSSST 428 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 LAL + G+ ++ + NHV Y D Sbjct: 429 RHDLNTLALKYL--------GRIMVKF---EDVAGKGVKQISFNHV-TLDKATAYAAEDA 476 Query: 168 EATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +L +L+PL + E L + + RG +D ++ + Sbjct: 477 DVTLQLHHKLMPLIEKEKNLKKVFEQIEMPLVPILMQMEMRGVLVDTAMLQAQSIELGGR 536 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L++ KL S L+ L+ + + + G S + + + LA D Sbjct: 537 IALLEQQAYKLAGREFNLS-SPKQLQTILYEELKLPIFKKTPGGQPST-AENVLQDLALD 594 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L ++ ++ KL T L V R T + TGR S QN+P Sbjct: 595 YPLPKVILEHRSLTKLKTTYTDRLPVQVHPASRRIHTSYNQTVTSTGRLSSNNPNLQNIP 654 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G ++V AD + +E R++A Sbjct: 655 IRT------------------------EEGRKIRRAFIAPPGFQMVAADYSQVELRIIAH 690 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------- 444 ++ + IKAF DI+ T A+ F +++V+ EQR K + L Y Sbjct: 691 VSKDPSLIKAFDKEWDIHRATAAEVFGVNLEQVTPEQRRRAKAINFGLLYGMSSFGLGRQ 750 Query: 445 AKVFKTMASHC-------GLDLQQFSQNVKSTSTFEDW-EQAESHHLWMQDQYPEFA--- 493 + + +A + ++ Q ++ + + + E +++ D + Sbjct: 751 LGIGRDLAQEYIDIYFKRYPKVHEYMQKIRIVAFTQGYVETLFGRRVYLPDIHASNMQRR 810 Query: 494 -------VKDKLIGTACELVKKA------WRAKHQG----VLQLWKDLTEGFACVVQEGG 536 + + GTA +++K A W K+ ++Q+ +L A E Sbjct: 811 RAAERAAINAPMQGTAADIIKIAMIKVSDWLQKNPVEAHLIMQVHDELVFEVAEKDLEKV 870 Query: 537 SISARRVAN 545 ++ Sbjct: 871 IPQIKKAME 879 >gi|21244827|ref|NP_644409.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] gi|21110529|gb|AAM38945.1| DNA polymerase I [Xanthomonas axonopodis pv. citri str. 306] Length = 934 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 98/574 (17%), Positives = 182/574 (31%), Gaps = 100/574 (17%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE QA + + PV+L DRT+ + L L Sbjct: 361 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGVPVQL-DRTQ---ALAQLAPLLT 416 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V + + ++ + ++ +G ++ Sbjct: 417 DPAVRKLGQHGKYDLHVMRRHGVELAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 476 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 K E+ C P+ + D + T L + L P Sbjct: 477 VKYEDV-------CGKGAKQIPFAQISLEDATRY------AAEDADITLRLHRVLGPRLA 523 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + I G +D + + + +++ + +L Sbjct: 524 SEPGLERVYRDIEMPLVDVLARIEANGVCVDAAELRRQRADLSKRMLAAQQKATELAGRT 583 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L+ LF + V + S + + +A L R+ + K Sbjct: 584 F-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLTK 641 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E + GR+ + GA+ TGR S QN+P + Sbjct: 642 LRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED--------- 691 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G+KL+ D + IE R++A ++G+ + AF +G Sbjct: 692 ---------------GRRIRRAFVAPPGRKLIACDYSQIELRIMAHLSGDPGLVGAFESG 736 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T A+ F ID VS ++R K + L Y A+ + Sbjct: 737 ADVHRATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIAL 796 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + F + + ++ + A+ + G Sbjct: 797 YFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQG 856 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K+A + +LQ+ +L Sbjct: 857 TAADIIKRAMVKVDGWIADHAQRAKMILQVHDEL 890 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 54/170 (31%), Gaps = 10/170 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 742 ATAAEVFGRTIDTVSADERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 801 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 802 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 861 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMT 652 + M ++L VHDE+V E + + + + M Sbjct: 862 IKRAMVKVDGWIADHAQRAKMILQVHDELVFEADIDFVDTLLSEVTTRMA 911 >gi|94311560|ref|YP_584770.1| DNA polymerase I [Cupriavidus metallidurans CH34] gi|93355412|gb|ABF09501.1| fused DNA polymerase I 5'->3' exonuclease ; 3'->5' polymerase ; 3'->5' exonuclease [Cupriavidus metallidurans CH34] Length = 934 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 104/596 (17%), Positives = 185/596 (31%), Gaps = 98/596 (16%) Query: 5 FIDIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDR---TEQSAMPSDLLQ 59 ID ET S P+ VG+ E A V + + + + Sbjct: 355 AIDTETTSLDPMLAQLVGISLSVEPGAAAYIPVAHRGPDVAGLENHGQLSREYVLERMRG 414 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 +L D + + ++ +F G+ + T + + + LA Sbjct: 415 WLEDPARPKLGQHLKYDSHVFANH-GVALRGIA-HDTMLESYVLASYRNHGMDSLAERLL 472 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 T E C + +D EY D + T L +++ P Sbjct: 473 SLKTITYE------EVCGKGANQIGFDQID------LPRATEYAAEDADVTLRLHRKMQP 520 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E + ++ Q I G ID D + + L+ Sbjct: 521 QLEASEGLKYVYEQIEIPVSVVLQKIERNGVLIDADRLAAQSAELGLRMMDLERAAHDAA 580 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF + +V + S + +LA D L +L Sbjct: 581 GQPF-NLGSPKQIGEILFNQMKLPVVKKTASGAPST-DEEVLQKLADDYPLPKLLLDYRG 638 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L + V+ GR+ + A TGR + QN+P + Sbjct: 639 LSKLKSTYTDKLPKMVNPNTGRVHTSYGQATAV-TGRLASTDPNLQNIPVRT-------- 689 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA+ G +V AD + IE R++A I+G++ ++AF Sbjct: 690 ----------------EEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENLLRAF 733 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 ANGEDI+ T + F + VS EQR KV+ L Y A Sbjct: 734 ANGEDIHRATAGEIFGVEREAVSSEQRRYAKVINFGLIYGMSAFGLASNLGIEREAAKHY 793 Query: 459 LQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDK 497 + ++ + + + E LW+ + A+ Sbjct: 794 IDRYFMRYPGVAHYMEQTRQTAREQGYVETVFGRRLWLPDINGGNGPRRQAAERAAINAP 853 Query: 498 LIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +L+K + R + ++Q+ +L E + + Sbjct: 854 MQGTAADLIKLSMIAVQDWLEGERLGTRQIMQVHDELVLEVPQAELELVRVKLPEL 909 >gi|226942232|ref|YP_002797305.1| DNA polymerase I [Azotobacter vinelandii DJ] gi|226717159|gb|ACO76330.1| DNA polymerase I [Azotobacter vinelandii DJ] Length = 908 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 90/555 (16%), Positives = 190/555 (34%), Gaps = 107/555 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+++ P +L ++ A+ + L L D V ++ ++ + GI+ Sbjct: 359 AAYIPLAHSYMGVPDQL----DRDAVLAALRPILEDPARAKVGQHAKYDMNVLAHY-GIE 413 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSIDS 142 + + T + + + LAL + T + GK F + ++ Sbjct: 414 VRGVAY-DTMLESYVLDSTATRHDMDSLALKYLGQGTIRFEDIAGKGAKQLTFDQIAL-- 470 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWLLD 191 + G Y D + T L + L L + E L + Sbjct: 471 --------------EQAGPYAAEDADVTLRLHQCLWQKLEAIPALAKVLKEIEMPLVPVL 516 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I G +D L+ + + ++ ++L+ + +L + L L+ G+ Sbjct: 517 ARIERHGALVDAKLLGEQSLELGEKLQQLEREAHELAGEPFNLA-SPKQLGAILYDKLGL 575 Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 ++ + S + S + LA+ L ++ ++ KL + L + ++ GR Sbjct: 576 PVLSKTAKGQPST-AESVLADLAEQGYPLPQVIMRHRSLNKLKGTYTDKLPQQINPRTGR 634 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 635 IHTSY-HQAVTATGRLSSSDPNLQNIPIRT------------------------TEGRRI 669 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G +LV AD + IE R++A +A + + AF N D++ T A+ F + V Sbjct: 670 RQAFVAPEGYRLVAADYSQIELRIMAHLAQDTSLLHAFRNDLDVHRATAAEVFGVAPEAV 729 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 S +QR K + L Y A+ + ++ + + +A++ Sbjct: 730 SADQRRSAKAINFGLIYGMSAFGLARQIGVERKEAQAYIDRYFARYPGVLAYMERTRAQA 789 Query: 481 ---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + ++ A+ + G+A +++K+A Sbjct: 790 AEQGYVETLFGRRLYLPEIHSKNGALRKAAERTAINAPMQGSAADIIKRAMVTVDAWLLE 849 Query: 515 -----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 850 SGLDARMILQVHDEL 864 Score = 38.6 bits (88), Expect = 3.2, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 15/88 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----- 619 RRL ++ R +Q + DI+ M Sbjct: 800 GRRLYLPEIHSKN---GALRKAAERTAINAP------MQGSAADIIKRAMVTVDAWLLES 850 Query: 620 -NGYDIVLTVHDEIVSETPDTPYFSVGT 646 ++L VHDE+V E + ++ Sbjct: 851 GLDARMILQVHDELVLEVREDQVEALKA 878 >gi|167923694|ref|ZP_02510785.1| DNA polymerase I [Burkholderia pseudomallei BCC215] Length = 923 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 351 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLG 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 407 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 509 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 44.7 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 815 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 865 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 866 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 900 >gi|209551674|ref|YP_002283591.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537430|gb|ACI57365.1| DNA polymerase I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 999 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 96/509 (18%), Positives = 179/509 (35%), Gaps = 89/509 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L D V+ VA N ++ +L ++ I ++ + T +++ + L+ Sbjct: 471 LKSLLEDAAVLKVAQNLKYDYLLMQRY---GIETRSFDDTMLISYVLDAGTGAHGMDPLS 527 Query: 116 LNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 F H K G K ++ D RA H Y D + T Sbjct: 528 EKFLGHTPIPYKDVAGS------GKANVTFDLVDIDRATH---------YAAEDADVTLR 572 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L P ER L + + RG +D ++ +L +AQ +L++ Sbjct: 573 LWLVLKPRLAAAGLTSVYERLERPLLPVLARMEARGITVDRQILSRLSGELAQGAARLED 632 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I L + L LF G+ ++ T + S + LA L R Sbjct: 633 EIYVLAGERF-NIGSPKQLGDILFGKMGLAGGSKTK-TGQWSTSAQVLEDLAAAGFELPR 690 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V ++ + T ++ TGR S QN+P + Sbjct: 691 KIVDWRQLTKLKSTYTDALPGYVHAETKRVHTSYSLASTTTGRLSSSEPNLQNIPVRT-- 748 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ I++ G KL+ AD + IE RVLA +A Sbjct: 749 ----------------------AEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIP 786 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 787 QLTKAFEDGVDIHAMTASEMFGVPVEGMPGEVRRRAKAINFGIIYGISAFGLANQLSIER 846 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S G ++++ + + + + + S + ++ Sbjct: 847 SEAGDYIKKYFERFPGIRDYMESRKAMARDKGYVETIFGRRINYPEIRSSNPSVRAFNER 906 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQL 520 A+ + G+A +++++A + ++ Sbjct: 907 AAINAPIQGSAADVIRRAMIRMEPALAEV 935 >gi|83716432|ref|YP_438805.1| DNA polymerase I [Burkholderia thailandensis E264] gi|257141887|ref|ZP_05590149.1| DNA polymerase I [Burkholderia thailandensis E264] gi|83650257|gb|ABC34321.1| DNA polymerase I [Burkholderia thailandensis E264] Length = 926 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 115/605 (19%), Positives = 206/605 (34%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 354 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + + ++ + GI + T + + + LAL Sbjct: 410 DASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVR 467 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + + EY D + T +L L Sbjct: 468 TIKYEDVAGKGAQQIGFDEVPL----------------EQASEYAAEDADITLQLHHALY 511 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA +L++ L Sbjct: 512 PQIAREPGLSRVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAYGL 571 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 572 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 629 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 630 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 681 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G K+V AD + IE R++A I+ ++ ++A Sbjct: 682 -----------------AEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRA 724 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 725 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 784 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + +A + LW+ + A+ Sbjct: 785 YIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 844 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 845 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPESELSIVREKLPEMMCG 904 Query: 543 VANVP 547 VA + Sbjct: 905 VAKLK 909 >gi|161869227|ref|YP_001598393.1| DNA polymerase I [Neisseria meningitidis 053442] gi|161594780|gb|ABX72440.1| DNA polymerase I [Neisseria meningitidis 053442] Length = 930 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 109/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + T+ + N +++ +F DI ++LA +GL L Sbjct: 409 PHLENPTLKKIGQNLKYDQHVFANY---DIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 851 GTASDLIKRAMIDVRNWLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903 >gi|325133441|gb|EGC56105.1| DNA polymerase I [Neisseria meningitidis M13399] Length = 931 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 108/594 (18%), Positives = 202/594 (34%), Gaps = 95/594 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I S+LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDSMLASYIIESHLGHGLD-ELSG 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A K + ++Q+ +L + ++ Sbjct: 851 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQI 904 >gi|118581241|ref|YP_902491.1| DNA polymerase I [Pelobacter propionicus DSM 2379] gi|118503951|gb|ABL00434.1| DNA polymerase I [Pelobacter propionicus DSM 2379] Length = 893 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 101/589 (17%), Positives = 183/589 (31%), Gaps = 108/589 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-------EQSAMPSDL 57 ID+ET S P A I ++++ D + +P DL Sbjct: 316 AIDLETTSLDP----------RDAEIVGLSFSFRDHQAWYIPVGHTSDAGLQPGQLPRDL 365 Query: 58 -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 L + + N F+ + + ++LA PS + Sbjct: 366 VLERLRPQLESPSPTKIGQNIKFDMQVLAT---NGVSLSGIRFDTMLASYVLNPSRQGHG 422 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 AL EHL A + K + + A Y D +AT Sbjct: 423 LDALAL-EHLGHRMISYAEVTGSGKTQKNFSQVEIETA---------SRYACEDADATWL 472 Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L ++ PL E L + + + G +D+ L+ L + L+ Sbjct: 473 LHRKFSPLLAENGVEELFHRIEMPLVPILAGMENHGVLLDIRLLADLSRDFSSRMATLEG 532 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 I +L + L LF + ++G + ++ LA++ + RL Sbjct: 533 RIFQLAGTTF-NLNSPKQLGEVLFERLQLKTGKKTKGKTGWSTDNEVLSSLAEEHEIARL 591 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L V GR+ + + TGR S QN+P + Sbjct: 592 ILDYRGLSKLKSTYSDALPRLVHPRTGRVHTSYN-QTVTSTGRLSSSDPNLQNIPIRS-- 648 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G ++ AD + IE RVLA ++G+ Sbjct: 649 ----------------------DEGRMIRHAFIAPPGHVIISADYSQIELRVLAHLSGDP 686 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 +AF + EDI+ T ++ F + V+ E R K + + Y G A+ Sbjct: 687 VFCQAFEHDEDIHTRTASEVFGLFPEMVTAEMRRQAKTINFGIIYGQGSFSLARQLGIAR 746 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPE 491 + + + F D ++ ++ Sbjct: 747 KTAEEFISAYKERHAKAVGFLDDCIRQAEEQGFVTTILGRRLPIADITSTNGNIRAFAQR 806 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534 A+ + G+A +++K A + +L + + V+E Sbjct: 807 NAINYPIQGSAADIIKSAMIRVDGRIRSEGLKSRLIMQVHDELVFEVRE 855 >gi|325131391|gb|EGC54100.1| DNA polymerase I [Neisseria meningitidis M6190] Length = 975 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 109/594 (18%), Positives = 202/594 (34%), Gaps = 94/594 (15%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + + ID ET S L + + A +AV ++ P +L D + L Sbjct: 397 NTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRL 452 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110 +L + + + N +++ +F I ++LA +GL L Sbjct: 453 KPHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELS 508 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + + +G I + Y A+ + + D E Sbjct: 509 ERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQ 566 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E+++++ E + + + G +ID + + + E KL++ D Sbjct: 567 LEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQ 620 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 621 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSL 679 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 680 AKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT--------- 729 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 730 ---------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 774 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 775 NGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 834 Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498 ++ + + + ++ + + A+ + Sbjct: 835 DRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPM 894 Query: 499 IGTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 895 QGTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 948 >gi|253995782|ref|YP_003047846.1| DNA polymerase I [Methylotenera mobilis JLW8] gi|253982461|gb|ACT47319.1| DNA polymerase I [Methylotenera mobilis JLW8] Length = 942 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 104/594 (17%), Positives = 184/594 (30%), Gaps = 121/594 (20%) Query: 7 DIETRSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD 56 D ET S PL G AY + + D P +L E + + Sbjct: 370 DTETTSLDPLTAQIVGMSFSVAAGTGAY------LPLTHDYFDAPSQL-PLAE---VLAK 419 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113 L + T+ V N +++ + GI + T + + Sbjct: 420 FKPLLENPTIKKVGQNLKYDKHVLANH-GIALNGIA-HDTLLQSYVLESHRGHGMDELSA 477 Query: 114 LALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + GK F + +I+ T + Sbjct: 478 RHLGIEPISFEQVAGKGAKQVGFNQVTIEVAAEYAAEDAD----------------ITLQ 521 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L + L P S E TI G ID +++ + I + +L+ Sbjct: 522 LHEALSPQVLQDDKLNFIYSQVEMPSMECLFTIERNGVLIDANMLNRQSNEIGMKLMELE 581 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +L + L+ LF GI + + S + +LA D L + Sbjct: 582 AKAFELAGQPF-NLGSPKQLQEILFGKLGIKPIKKTPSGAPST-DEDVLQELALDYPLPK 639 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L + +++ GR+ + TGR + QN+P + Sbjct: 640 VLLEYRGLAKLKSTYTDKLPKMINAHTGRVHTNYN-QAVAITGRLASSDPNLQNIPVRT- 697 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G +V AD + IE R++A ++ + Sbjct: 698 -----------------------AEGRRIREAFIAPPGSHIVSADYSQIELRIMAHLSKD 734 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 ++AFAN EDI+ T A+ F V EQR KV+ L Y A+ Sbjct: 735 AGMLQAFANNEDIHRATAAEIFGVERSAVDNEQRRYAKVINFGLIYGMSAFGLAQNLNIE 794 Query: 452 ASHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQY--------------------P 490 S ++++ +D + +++ + Sbjct: 795 RSAAQNYIERYFARYPGVRQYMQDTRELAKEKGYVETYFGRRLWVPEINSANGMRRAGAE 854 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534 A+ + GTA +L+K A A + ++Q+ +L A E Sbjct: 855 RAAINAPMQGTAADLIKLAMIAVDKWLKDEQLNTKLIMQVHDELVLEVADSELE 908 >gi|167615322|ref|ZP_02383957.1| DNA polymerase I [Burkholderia thailandensis Bt4] Length = 926 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 115/605 (19%), Positives = 206/605 (34%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 354 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + + ++ + GI + T + + + LAL Sbjct: 410 DASKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVR 467 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + + EY D + T +L L Sbjct: 468 TIKYEDVAGKGAQQIGFDEVPL----------------EQASEYAAEDADITLQLHHALY 511 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA +L++ L Sbjct: 512 PQIAREPGLARVYRDIEMPVSLVLRKMERTGVLIDSDRLGRQSSEIATRLIELEQQAYGL 571 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 572 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 629 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 630 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 681 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G K+V AD + IE R++A I+ ++ ++A Sbjct: 682 -----------------AEGRRIREAFIAPPGSKIVSADYSQIELRIMAHISEDESLLRA 724 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 725 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 784 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + +A + LW+ + A+ Sbjct: 785 YIDRYFLRYPGVARYMEETRARAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 844 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 845 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPESELSIVREKLPEMMCG 904 Query: 543 VANVP 547 VA + Sbjct: 905 VAKLK 909 >gi|294668660|ref|ZP_06733756.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309422|gb|EFE50665.1| DNA polymerase I [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 958 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 105/596 (17%), Positives = 199/596 (33%), Gaps = 95/596 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 380 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 435 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 436 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 491 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D Sbjct: 492 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 549 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL++ Sbjct: 550 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAAGQP 603 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 604 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 662 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 663 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 711 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 712 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 757 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 758 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 817 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 818 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 877 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 GTA +L+K+A + + ++Q+ +L + ++ Sbjct: 878 GTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQIME 933 >gi|294084835|ref|YP_003551595.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] gi|292664410|gb|ADE39511.1| DNA polymerase I [Candidatus Puniceispirillum marinum IMCC1322] Length = 976 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 99/570 (17%), Positives = 185/570 (32%), Gaps = 100/570 (17%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF--KKTLGIDIPS 90 ++ DD P + + + +++ D V+ + HN ++ + + GI++ Sbjct: 423 LNFSDDDTPAH-YPQLDFETAMAEIKPLFEDPAVLKIGHNLKYDAHVLMRPRNGGINLAP 481 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDC 147 T L+ H G L +F Sbjct: 482 VD--DTMCLSYVLDGG----------RVERHSMDYLAGHWLDYTTIKFSDVCGKGAKQIP 529 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDR 197 +A +Y D + T L+ L P ER L + + + Sbjct: 530 FSELAPEA---ALDYAAEDADITLRLWMILKPRLAGEKVASVYERLERPLIPVLAQMENY 586 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D ++ ++ A + L +DI+ L + L LF G+ + Sbjct: 587 GITVDRSILARMSNDFATRMEALAQDILALAGEDFNIA-SPKQLGEILFDKMGLQGGKKA 645 Query: 258 EGTLKSILSHSNITQLAK---DLILNRLASSGSAILK---LNTLSEAV-SSDGRLRGTLQ 310 + T S + LA ++ L A LK + L E + + GR+ + Sbjct: 646 K-TGAYSTSADVLEDLAASGVEIASKVLDWRHLAKLKSTYADALVECILPATGRVHTSFS 704 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 GAS TGR S QN+P + +R+ IA Sbjct: 705 MVGAS-TGRLSSSDPNVQNIPIRT------------------------SEGRQIRTAFIA 739 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 + G KL+ D + IE R++A +AGE I+AF +G DI+ T ++ F P+D++ E R Sbjct: 740 AEGCKLISVDYSQIELRLVAHVAGEQSMIEAFKDGIDIHARTASEVFGIPLDQMDSETRR 799 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 K + + Y G A+ + + +N + + + E+ Sbjct: 800 RAKAINFGIIYGISAFGLARQLSIPQGEARDYIASYFENFPGIRAYMERIKTEAREDGFV 859 Query: 487 DQ---------------------YPEFAVKDKLIGTACELVKKAWRAKHQG--------- 516 + A+ + G+A +++K+A Sbjct: 860 ETLFGRRIHITGMAGGSAAHRGFAERQAINAPIQGSAADIIKRAMIRIPPALQAADIRAD 919 Query: 517 -VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +LQ+ +L + R+ Sbjct: 920 MLLQVHDELIFEAPAADADNAVKHITRIME 949 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 +Q + DI+ M D++L VHDE++ E P + V + +M Sbjct: 892 IQGSAADIIKRAMIRIPPALQAADIRADMLLQVHDELIFEAPAADADNAVKHITRIM 948 >gi|167724604|ref|ZP_02407840.1| DNA polymerase I [Burkholderia pseudomallei DM98] Length = 620 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 199/611 (32%), Gaps = 125/611 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60 D ET S P+ A I +++ + MP+ L + Sbjct: 48 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 97 Query: 61 ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D + + ++ + GI + T + + + LAL Sbjct: 98 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 155 Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K E+ GK F + + EY D + T + Sbjct: 156 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 199 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L P D E + L+ + + G ID D + + IA L+ Sbjct: 200 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 259 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ L G + + F + +V + S + +LA+D L + Sbjct: 260 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 317 Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 318 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 375 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 376 -----------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 412 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 413 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 472 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490 L + ++ + + + + + LW+ + Sbjct: 473 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 532 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGG 536 A+ + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 533 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 592 Query: 537 SISARRVANVP 547 VA + Sbjct: 593 PEMMCGVAKLK 603 Score = 44.3 bits (103), Expect = 0.075, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 512 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 562 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 563 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 597 >gi|46201227|ref|ZP_00055515.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 926 Score = 273 bits (699), Expect = 4e-71, Method: Composition-based stats. Identities = 95/545 (17%), Positives = 177/545 (32%), Gaps = 93/545 (17%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-- 108 + + + L L D V+ V HN ++ + G+ + + + T +L+ S Sbjct: 398 ADILARLKPLLADPAVLKVGHNIKYDMQVMA---GLGLAIQSFDDTMLLSYVLDGASHGH 454 Query: 109 -LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L CL L+ E C + +D + Y D Sbjct: 455 GLDELCL-LHLGHRNISFAEV-------CGSGRNQVTFDRVPLD------KACAYAAEDA 500 Query: 168 EATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L L P ER L + + G ++D ++ L E + Sbjct: 501 DMTLRLHGLLKPRLLLERMVSVYETLERPLVPVIAAMERDGIKVDRPQLMALSEDFGRRL 560 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +L+ ++V L +G + L LF + ++ T + + LA Sbjct: 561 TELETEVVALNNGEAFNLGSPQQLGKVLFETLNLPGGKKTK-TGQWATGADVLEDLAHLH 619 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L + KL + L ++ GR+ + A+ TGR S QN+P Sbjct: 620 PLPARLLDWRQLSKLKGTYTDALVAQINPATGRVHTSYAL-AATTTGRLSSSDPNLQNIP 678 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R +A GK+L+ AD + IE R++A Sbjct: 679 IRT------------------------EEGRKIRHAFVAEPGKRLISADYSQIELRLVAH 714 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 +A + AFA+G DI+ T ++ F P+D + R K + + Y G A Sbjct: 715 VAEIEGLRDAFADGADIHAITASQVFGVPLDGMDSALRRRAKAINFGIIYGISPFGLAAQ 774 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQ 486 ++ + TF + + E+ M+ Sbjct: 775 LGIPQGEAKAYIEAYFARYPEIRTFMERTKEEAREKGFVTTLFGRKVFTPGIKDKNGAMR 834 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISA 540 A+ + G A +++K+A ++ +L + + E + + Sbjct: 835 AFAERAAINGPIQGGAADIIKRAMIRLPAALVAEGLKARLLLQVHDELVLEAPEDETEAT 894 Query: 541 RRVAN 545 RV Sbjct: 895 VRVVK 899 >gi|94501578|ref|ZP_01308095.1| DNA polymerase I [Oceanobacter sp. RED65] gi|94426261|gb|EAT11252.1| DNA polymerase I [Oceanobacter sp. RED65] Length = 916 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 100/572 (17%), Positives = 185/572 (32%), Gaps = 100/572 (17%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID ET S + + + +A A+ + P +L ++ + + Sbjct: 341 AIDTETTSLKYMEAEIVGISLAVAPNEACYIPLAHDYAGAPEQL----DRDWVLQKMKPL 396 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS-LKNACLALNF 118 L DET V N ++ + K DI T + + +S LA ++ Sbjct: 397 LEDETPKKVGQNLKYDAHVLKNY---DIELNGIAHDTMLESYVLNSTASKHNMDDLAKHY 453 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 H E GK F + + + GEY D + T L Sbjct: 454 LGHECIDFESIAGKGAKQLTFNQIPV----------------EQAGEYAAEDADITLRLH 497 Query: 175 KRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P + E L + + G ++ D + + I Q ++L+ Sbjct: 498 QVLWPQLEADESLLTLYKKVELPLVQVLTNMEYVGASVNADKLHQQSSEIEQRLQELERK 557 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + + T L+ F + ++ + S + +L+ D L ++ Sbjct: 558 AHDIAGEVF-NLGSTKQLQAIFFEKLELPVIKKTPKGQPSTAEE-VLVELSHDYELPKVI 615 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++S + T + TGR S QN+P + Sbjct: 616 LEHRGLAKLKNTYTDKLPLMINSKSQRVHTSYHQAVTATGRLSSSDPNLQNIPIR----- 670 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R A G LV AD + IE R++A ++G+ Sbjct: 671 -------------------NEEGRKIRQAFEAPEGYTLVAADYSQIELRIMAHLSGDKGL 711 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF NG+DI+ T A+ V EQR K + L Y A+ S Sbjct: 712 LDAFKNGKDIHRATAAEIMEVDEADVDNEQRRRAKAVNFGLIYGMSAFGLARQLGIGRSE 771 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 + ++ + + + S + + A Sbjct: 772 AQEYIDKYFDRYPGVKKYMESTRELAAKQGYVETLFGRRLYLPEINSRNGMRRQAAERTA 831 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + GTA +++K+A HQ + + D+ Sbjct: 832 INAPMQGTAADIIKRAMIKMHQWIQESAHDVH 863 Score = 44.7 bits (104), Expect = 0.045, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKN----ATKNGYDI--VLTVHDEIVSETPDTPYFSV-GTLCSLM 651 Q + DI+ M ++ +D+ ++ VHDE++ E PD +V + S+M Sbjct: 837 QGTAADIIKRAMIKMHQWIQESAHDVHMIMQVHDELIFEVPDGQLDAVSAEIKSIM 892 >gi|167820743|ref|ZP_02452423.1| DNA polymerase I [Burkholderia pseudomallei 91] Length = 622 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 110/611 (18%), Positives = 199/611 (32%), Gaps = 125/611 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQY----- 60 D ET S P+ A I +++ + MP+ L + Sbjct: 50 DTETTSLDPMR----------AEIVGLSFSVEPGHAAYVPVAHRGPDMPAQLPRDEVLAK 99 Query: 61 ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D + + ++ + GI + T + + + LAL Sbjct: 100 LTPWLEDAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLAL 157 Query: 117 N-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K E+ GK F + + EY D + T + Sbjct: 158 RHLGVKTIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQ 201 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L P D E + L+ + + G ID D + + IA L+ Sbjct: 202 LHHALYPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALE 261 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ L G + + F + +V + S + +LA+D L + Sbjct: 262 QEAYALAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPK 319 Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 320 LLLEHRGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT- 377 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G K+V AD + IE R++A I+ + Sbjct: 378 -----------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISED 414 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 + ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 415 ESLLRAFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGIT 474 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYP 490 L + ++ + + + + + LW+ + Sbjct: 475 RDAAKLYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAE 534 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGG 536 A+ + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 535 RAAINAPMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKL 594 Query: 537 SISARRVANVP 547 VA + Sbjct: 595 PEMMCGVAKLK 605 Score = 44.0 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 514 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 564 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 565 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 599 >gi|56707285|ref|YP_169181.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110669755|ref|YP_666312.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|224456350|ref|ZP_03664823.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|254369967|ref|ZP_04985975.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254874123|ref|ZP_05246833.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|56603777|emb|CAG44744.1| DNA polymerase I [Francisella tularensis subsp. tularensis SCHU S4] gi|110320088|emb|CAL08127.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC198] gi|151568213|gb|EDN33867.1| DNA polymerase I [Francisella tularensis subsp. tularensis FSC033] gi|254840122|gb|EET18558.1| DNA polymerase I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158404|gb|ADA77795.1| DNA polymerase I [Francisella tularensis subsp. tularensis NE061598] Length = 897 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 102/558 (18%), Positives = 185/558 (33%), Gaps = 89/558 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + EHL IA K D ++ +Y D + T LF Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478 Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L ++ + G +ID +++ + K+L+ Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 L S LR LF G+ V + + S + QLA+D + L Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +G +V AD + IE R++A ++ + Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +K F DI+ T A+ ID+VS EQR K + L Y A+ + + Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + S + + S ++ ++ A Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++KKA + + Q + ++ + V V + + Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864 Query: 554 HKRDVHIVLPSSRRLVYS 571 + ++ ++ +L Sbjct: 865 IVAKIKSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|89256939|ref|YP_514301.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134301322|ref|YP_001121290.1| DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|156503129|ref|YP_001429194.1| DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368204|ref|ZP_04984224.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|290953999|ref|ZP_06558620.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|295312618|ref|ZP_06803370.1| DNA polymerase I [Francisella tularensis subsp. holarctica URFT1] gi|89144770|emb|CAJ80105.1| DNA polymerase I [Francisella tularensis subsp. holarctica LVS] gi|134049099|gb|ABO46170.1| multifunctional DNA polymerase I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254014|gb|EBA53108.1| DNA polymerase I [Francisella tularensis subsp. holarctica 257] gi|156253732|gb|ABU62238.1| multifunctional DNA polymerase I [Francisella tularensis subsp. holarctica FTNF002-00] Length = 897 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 102/558 (18%), Positives = 185/558 (33%), Gaps = 89/558 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + EHL IA K D ++ +Y D + T LF Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478 Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L ++ + G +ID +++ + K+L+ Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 L S LR LF G+ V + + S + QLA+D + L Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +G +V AD + IE R++A ++ + Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +K F DI+ T A+ ID+VS EQR K + L Y A+ + + Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + S + + S ++ ++ A Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++KKA + + Q + ++ + V V + + Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864 Query: 554 HKRDVHIVLPSSRRLVYS 571 + ++ ++ +L Sbjct: 865 IVAKIKSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|261494497|ref|ZP_05990983.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309881|gb|EEY11098.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. OVINE] Length = 952 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 94/556 (16%), Positives = 181/556 (32%), Gaps = 91/556 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L L + + + N ++ +F GI++ + T + + T L Sbjct: 428 SKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAF-DTMIESYTQNSTGRHNMDDL 485 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCK 164 A + H T E GK F K I T H W+ + Sbjct: 486 AARYLGHKTIPFEELAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQ--- 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 EL K + E L + I G ID +L I + ++++ + Sbjct: 543 -----EPELVKLF---DEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLV 594 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283 + T L+ LF G+ ++ + S + + +LA+ ++ +L Sbjct: 595 HAEAGQTFNLA-STKQLQEILFEKLGLPVLKKTPKGAPST-NEEVLDELAQQGHLVPKLL 652 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 653 MEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYN-QAVTATGRLSSSDPNLQNIPIR---- 707 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A G K+V AD + IE R++A ++ ++ Sbjct: 708 --------------------NEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEG 747 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 I AFA G+DI+ T A+ F + +V+ EQR K + L Y + + Sbjct: 748 MINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSNQLGIGRA 807 Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492 + + Q + F +S + ++ Sbjct: 808 EAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAILRKAAERV 867 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A+ + GTA +++K A + ++ + V V + Sbjct: 868 AINAPMQGTAADIIKVAMIGIDNAIRD---------NDEIKMIMQVHDELVFEVKADKID 918 Query: 553 RHKRDVHIVLPSSRRL 568 + + + + + L Sbjct: 919 HYSQLIKTEMEKAISL 934 >gi|261492276|ref|ZP_05988839.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261312055|gb|EEY13195.1| DNA-directed DNA polymerase I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 952 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 94/556 (16%), Positives = 181/556 (32%), Gaps = 91/556 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L L + + + N ++ +F GI++ + T + + T L Sbjct: 428 SKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAF-DTMIESYTQNSTGRHNMDDL 485 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCK 164 A + H T E GK F K I T H W+ + Sbjct: 486 AARYLGHKTIPFEELAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQ--- 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 EL K + E L + I G ID +L I + ++++ + Sbjct: 543 -----EPELVKLF---DEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLV 594 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283 + T L+ LF G+ ++ + S + + +LA+ ++ +L Sbjct: 595 HAEAGQTFNLA-STKQLQEILFEKLGLPVLKKTPKGAPST-NEEVLDELAQQGHLVPKLL 652 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 653 MEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYN-QAVTATGRLSSSDPNLQNIPIR---- 707 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A G K+V AD + IE R++A ++ ++ Sbjct: 708 --------------------NEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEG 747 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 I AFA G+DI+ T A+ F + +V+ EQR K + L Y + + Sbjct: 748 MINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSNQLGIGRA 807 Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492 + + Q + F +S + ++ Sbjct: 808 EAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAILRKAAERV 867 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A+ + GTA +++K A + ++ + V V + Sbjct: 868 AINAPMQGTAADIIKVAMIGIDNAIRD---------NDEIKMIMQVHDELVFEVKADKID 918 Query: 553 RHKRDVHIVLPSSRRL 568 + + + + + L Sbjct: 919 HYSQLIKTEMEKAISL 934 >gi|240949360|ref|ZP_04753702.1| DNA polymerase I [Actinobacillus minor NM305] gi|240296210|gb|EER46863.1| DNA polymerase I [Actinobacillus minor NM305] Length = 950 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 91/558 (16%), Positives = 183/558 (32%), Gaps = 91/558 (16%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L + + + N ++ +F GI++ + T + + T L+ Sbjct: 427 QLKPILENPEIKKIGQNIKYDLTVFANH-GINVQGVAF-DTMLESYTLNSTGRHNMDDLS 484 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCKR 165 + H T E GK F + I + T H W Sbjct: 485 DRYLGHKTIEFEAIAGKGKNQLTFDQIEISTAAEYAAEDADVTMKLHQVLWSQL------ 538 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +L + E L + I G ID + + I + +L++++ Sbjct: 539 ---VQEPTLVKLFD--EIELPLVSVLSRIERNGVLIDPAKLKQQSSEIERRLAELEQEVH 593 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLAS 284 + + T L+ LF G+ ++ + S + + +LA + +L Sbjct: 594 SEAGSVFNLA-STKQLQEILFEKLGLPILKKTPKGAAST-NEEVLEELAMMGHRVPKLLI 651 Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 652 EHRGLSKLKSTYTDKLPLMINAKTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIR----- 705 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G K+V AD + IE R++A +A ++ Sbjct: 706 -------------------NEEGRRIRQAFIARKGYKIVAADYSQIELRIMAHLANDEGM 746 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +KAFA G+DI+ +T ++ F P+D+V+ EQR K + L Y + + Sbjct: 747 LKAFAEGKDIHRSTASEIFGVPLDEVTGEQRRNAKAINFGLIYGMSEFGLSNQLGISRAD 806 Query: 455 CGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFA 493 ++ + + F + +S + + A Sbjct: 807 AKQYMEAYFNRYPNVLQFMTDIKAKAAEKGYVETLLGRRLYLPEIKSSNAMRRKAAERVA 866 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++K A + + + ++ + V V + Sbjct: 867 INAPMQGTAADIIKIAMIGIDRII---------QHSDEIKMIMQVHDELVFEVREDKVEH 917 Query: 554 HKRDVHIVLPSSRRLVYS 571 + + + + +L Sbjct: 918 YSALIKAEMEKAIQLSVP 935 >gi|229587657|ref|YP_002869776.1| DNA polymerase I [Pseudomonas fluorescens SBW25] gi|229359523|emb|CAY46364.1| DNA polymerase I [Pseudomonas fluorescens SBW25] Length = 929 Score = 273 bits (699), Expect = 5e-71, Method: Composition-based stats. Identities = 93/574 (16%), Positives = 190/574 (33%), Gaps = 117/574 (20%) Query: 25 AEQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD-----LLQYLRDETVMCVAHNSL 74 A+QA + ++A T + D L L D T + V ++ Sbjct: 355 AQQAQLVGVSFAVQPHEAAYIPLTHAYIGAPEQLDRDTVLLALKPLLEDPTKLKVGQHAK 414 Query: 75 FERILFKKTLGIDIPSKRWI------CTSVLARTNGLPS-SLKNACLALNFSEHLT---K 124 F+ + P+ T + + + LA + ++ T + Sbjct: 415 FDMNILANCAIGGDPAHGITVRGIAFDTMLESYVLNATATRHDMDSLAKKYLDYDTVAFQ 474 Query: 125 MEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---- 179 GK F + ++ + G Y D + T L + L Sbjct: 475 DIAGKGAKQLTFDQIAL----------------EQAGPYAAEDADVTLRLHQALFAQLSA 518 Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L+D E L + I +G +D DL+ + + +L+ ++ Sbjct: 519 IPSLASVLTDIEIPLVPVLARIERQGALVDKDLLGIQSIELGNKMVELERQAFEIAGEEF 578 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILK 291 + L L+ G+ ++ + G ++ + + +LA+D L ++ ++ K Sbjct: 579 -NLGSPKQLGAILYEKLGLPVLKKT-GKGQASTAEEVLAKLAEDDYPLPKVLMQYRSMSK 636 Query: 292 LNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E ++ GR+ + + TGR S QN+P + Sbjct: 637 LKSTYTDRLPEQINPRTGRIHTSY-HQAVAATGRLSSSDPNLQNIPVRT----------- 684 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA G K++ AD + IE R++A ++ ++ + AF + Sbjct: 685 -------------AEGRRIRQAFIAPKGYKMLAADYSQIELRIMAHLSKDEGLMNAFRHN 731 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQ 461 D++ T A+ F + V+ +QR K + L Y GA+ + Sbjct: 732 LDVHTATAAEVFKVELGDVTSDQRRSAKAINFGLIYGMGAQKLGKDIGVDTKTAKAYIDV 791 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIG 500 + + + +A++ + + A+ + G Sbjct: 792 YFARYPGVREYMERTRAQASDQGYVETFFGRRLYLPDIHSNKPQERAAAERTAINAPMQG 851 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++KKA + +LQ+ +L Sbjct: 852 TAADIIKKAMVLVDNWLTDSGLDAKVILQVHDEL 885 >gi|167010003|ref|ZP_02274934.1| DNA polymerase I [Francisella tularensis subsp. holarctica FSC200] Length = 897 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 102/558 (18%), Positives = 185/558 (33%), Gaps = 89/558 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + EHL IA K D ++ +Y D + T LF Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478 Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L ++ + G +ID +++ + K+L+ Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 L S LR LF G+ V + + S + QLA+D + L Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +G +V AD + IE R++A ++ + Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +K F DI+ T A+ ID+VS EQR K + L Y A+ + + Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + S + + S ++ ++ A Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++KKA + + Q + ++ + V V + + Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864 Query: 554 HKRDVHIVLPSSRRLVYS 571 + ++ ++ +L Sbjct: 865 IVAKIKSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|254360483|ref|ZP_04976632.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] gi|153091023|gb|EDN73028.1| DNA-directed DNA polymerase I [Mannheimia haemolytica PHL213] Length = 952 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 94/556 (16%), Positives = 181/556 (32%), Gaps = 91/556 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L L + + + N ++ +F GI++ + T + + T L Sbjct: 428 SKLKPILLNPEIKKIGQNIKYDLTIFANY-GIELQGVAF-DTMIESYTQNSTGRHNMDDL 485 Query: 115 ALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYD------CTRANHVQAWQLFGEYCK 164 A + H T E GK F K I T H W+ + Sbjct: 486 AARYLGHKTIPFEELAGKGKNQLTFDKIEIAKAAEYAAEDADVTMKLHQVLWEKLQQ--- 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 EL K + E L + I G ID +L I + ++++ + Sbjct: 543 -----EPELVKLF---DEIEMPLVGVLSRIERNGVLIDPKKLLTQSAEIEKRLEEVETLV 594 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLA 283 + T L+ LF G+ ++ + S + + +LA+ ++ +L Sbjct: 595 HAEAGQTFNLA-STKQLQEILFEKLGLPVLKKTPKGAPST-NEEVLDELAQQGHLVPKLL 652 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 653 MEHRGLSKLKSTYTDKLPQLINKKTGRVHTSYN-QAVTATGRLSSSDPNLQNIPIR---- 707 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A G K+V AD + IE R++A ++ ++ Sbjct: 708 --------------------NEEGRRIRQAFVAREGYKIVAADYSQIELRIMAHLSNDEG 747 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 I AFA G+DI+ T A+ F + +V+ EQR K + L Y + + Sbjct: 748 MINAFAEGKDIHRATAAEIFGVELGEVTSEQRRSAKAINFGLIYGMSSFGLSNQLGIGRA 807 Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492 + + Q + F +S + ++ Sbjct: 808 EAQKYMDLYFQRYPAVQQFMTDIREVAVEKGYVETLFGRRLYLPDIKSGNAILRKAAERV 867 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A+ + GTA +++K A + ++ + V V + Sbjct: 868 AINAPMQGTAADIIKVAMIGIDNAIRD---------NDEIKMIMQVHDELVFEVKADKID 918 Query: 553 RHKRDVHIVLPSSRRL 568 + + + + + L Sbjct: 919 HYSQLIKTEMEKAISL 934 >gi|186473237|ref|YP_001860579.1| DNA polymerase I [Burkholderia phymatum STM815] gi|184195569|gb|ACC73533.1| DNA polymerase I [Burkholderia phymatum STM815] Length = 915 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 107/580 (18%), Positives = 191/580 (32%), Gaps = 109/580 (18%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P + + + A +A A+ D PV+L + + + L + Sbjct: 341 SFDTETTSLDPMVAQIVGISIAVEAGKAAYIPVAHHGPDAPVQLP----RDEVLAKLKPW 396 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL---N 117 L V + ++ + GI + T + + LAL Sbjct: 397 LESRDKKKVGQHLKYDEQVLANY-GITMDGIE-HDTLLQSYVLESHRPHDMDNLALRHLG 454 Query: 118 FSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + GK F + ++D EY D + T L + Sbjct: 455 LKTIKYEDVAGKGASQIGFDEVALDKA----------------SEYAAEDADITLRLHQT 498 Query: 177 LIPLSDGERDL-----------WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E L + + + G ID++ + IA +L+ Sbjct: 499 LYPQIASEVPLDHVYRNIEVPTSRVLRKMERNGVLIDVEKLRVQSNEIATRLVELERQAY 558 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L G + + F + +V + S + +LA+D L + Sbjct: 559 DLAGGEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKTILE 616 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V++ GR+ + TGR + QN+P + Sbjct: 617 HRGLSKLKSTYTDKLPRMVNASTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 670 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G KLV AD + IE R++A I+G++ + Sbjct: 671 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDEALL 711 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF GEDI+ T ++ F+ +VS +QR I KV+ L Y A Sbjct: 712 RAFKQGEDIHRATASEVFSVTPLEVSNDQRRIAKVINFGLIYGMSSFGLASNLGITRDAA 771 Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAV 494 L + ++ + + + E LW+ + A+ Sbjct: 772 KLYIDRYFARYPGVAAYMENTRTSAKMKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 831 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA +L+K + A + + ++Q+ +L Sbjct: 832 NAPMQGTAADLIKLSMIAVQKWIEESGIRTRMIMQVHDEL 871 Score = 46.7 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKN 620 RRL ++ G A R +Q + D++ M ++ Sbjct: 807 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVQKWIEES 857 Query: 621 GYDI--VLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 G ++ VHDE+V E PD V L LM Sbjct: 858 GIRTRMIMQVHDELVLEVPDDELSDVRKRLPELMC 892 >gi|167850580|ref|ZP_02476088.1| DNA polymerase I [Burkholderia pseudomallei B7210] Length = 622 Score = 273 bits (699), Expect = 6e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 203/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + L +L Sbjct: 50 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----SDEVLAKLTPWLE 105 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 106 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 163 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 164 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 207 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 208 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 267 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 268 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 325 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 326 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 377 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 378 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 420 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 421 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 480 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 481 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 540 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 541 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 600 Query: 543 VANVP 547 VA + Sbjct: 601 VAKLK 605 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 514 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 564 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 565 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 599 >gi|316985617|gb|EFV64564.1| DNA polymerase I [Neisseria meningitidis H44/76] gi|325139302|gb|EGC61843.1| DNA polymerase I [Neisseria meningitidis CU385] Length = 983 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 191/551 (34%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 398 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 453 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 454 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 509 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 510 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 567 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 568 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 621 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 622 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 680 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 681 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 729 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 730 --------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 775 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 776 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 835 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 836 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 895 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 896 GTASDLIKRAM 906 >gi|208780185|ref|ZP_03247527.1| DNA polymerase I [Francisella novicida FTG] gi|208743834|gb|EDZ90136.1| DNA polymerase I [Francisella novicida FTG] Length = 897 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 104/562 (18%), Positives = 188/562 (33%), Gaps = 89/562 (15%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L D + VAHN F+ + K I+I K T ++A Sbjct: 369 EFVLDKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHD 426 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L+ EHL IA K D ++ +Y D + T Sbjct: 427 MDSLS---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADIT 474 Query: 171 RELFKRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 LF L + E L ++ + G +ID +++ + K+ Sbjct: 475 FRLFNYFKALLEQDKVLYKLYCELEMPLTIILNQMEKTGVKIDAAKLIQQSASLETSIKE 534 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+ L + S LR LF G+ V + + S + QLA+D + Sbjct: 535 LESKCYNLAGQEFKLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEI 592 Query: 280 NRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 593 AALIMKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS 651 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA NG +V AD + IE R++A ++ Sbjct: 652 ------------------------PEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSK 687 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + +KAF DI+ T A+ ID+VS EQR K + L Y A+ + Sbjct: 688 DKNLLKAFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEI 747 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489 + + + S + + S ++ ++ Sbjct: 748 PRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAA 807 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A+ + GTA +++KKA + + Q + ++ + V V + Sbjct: 808 ERAAINAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKT 860 Query: 550 VMRRHKRDVHIVLPSSRRLVYS 571 + + ++ ++ +L Sbjct: 861 KLEEIVAKIKSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|167899173|ref|ZP_02486574.1| DNA polymerase I [Burkholderia pseudomallei 7894] Length = 625 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 53 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 108 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 109 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 166 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 167 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 210 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 211 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDKLSRQSGEIATRLVTLEQEAYAL 270 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 271 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 328 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 329 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 380 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 381 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 423 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 424 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 483 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 484 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 543 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 544 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 603 Query: 543 VANVP 547 VA + Sbjct: 604 VAKLK 608 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 517 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 567 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 568 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 602 >gi|261393312|emb|CAX50944.1| DNA polymerase I (POL I) [Neisseria meningitidis 8013] Length = 930 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 109/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I S+LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDSMLASYIIESHLGHGLD-ELSG 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 851 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903 >gi|187931055|ref|YP_001891039.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] gi|187711964|gb|ACD30261.1| DNA polymerase I [Francisella tularensis subsp. mediasiatica FSC147] Length = 897 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 102/558 (18%), Positives = 184/558 (32%), Gaps = 89/558 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + EHL IA K D ++ +Y D + T LF Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478 Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L + + G +ID +++ + K+L+ Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTTILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 L S LR LF G+ V + + S + QLA+D + L Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +G +V AD + IE R++A ++ + Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +K F DI+ T A+ ID+VS EQR K + L Y A+ + + Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + S + + S ++ ++ A Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++KKA + + Q + ++ + V V + + Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864 Query: 554 HKRDVHIVLPSSRRLVYS 571 + ++ ++ +L Sbjct: 865 IVAKIKSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|167743555|ref|ZP_02416329.1| DNA polymerase I [Burkholderia pseudomallei 14] Length = 619 Score = 273 bits (698), Expect = 6e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 47 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 102 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 103 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 160 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 161 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 204 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 205 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 264 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 265 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 322 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 323 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 374 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 375 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 417 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 418 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 477 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 478 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 537 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 538 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 597 Query: 543 VANVP 547 VA + Sbjct: 598 VAKLK 602 Score = 44.3 bits (103), Expect = 0.072, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 511 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 561 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 562 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 596 >gi|167915856|ref|ZP_02502947.1| DNA polymerase I [Burkholderia pseudomallei 112] Length = 618 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 114/605 (18%), Positives = 204/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 46 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 101 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 102 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 159 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + + EY D + T +L L Sbjct: 160 TIKYEDVAGKGAQQIGFDEVPL----------------AQASEYAAEDADITLQLHHALY 203 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA L+++ L Sbjct: 204 PQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYAL 263 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 264 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 321 Query: 288 AILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 322 GLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 373 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G K+V AD + IE R++A I+ ++ ++A Sbjct: 374 -----------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMAHISEDESLLRA 416 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 417 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 476 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 + ++ + + + + + LW+ + A+ Sbjct: 477 YIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 536 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISARR 542 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 537 PMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMCG 596 Query: 543 VANVP 547 VA + Sbjct: 597 VAKLK 601 Score = 44.3 bits (103), Expect = 0.072, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NG 621 RRL ++ G A R +Q + D++ M G Sbjct: 510 GRRLWLPEINGGNGPRRQAA---ERAAINAP------MQGTAADLIKLSMIAVDDWLERG 560 Query: 622 ---YDIVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +++ VHDE+V E P+ V L +M Sbjct: 561 GLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 595 >gi|167566520|ref|ZP_02359436.1| DNA polymerase I [Burkholderia oklahomensis EO147] Length = 923 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 117/605 (19%), Positives = 205/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 351 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLP----RDEVLAKLKPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + + ++ + GI + T + + + LAL Sbjct: 407 DASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + +D EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPLDKA----------------SEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA +L+++ L Sbjct: 509 PQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYVL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA+ G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------AEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKD 496 + ++ + + + E LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC----VVQEGGSISARR 542 + GTA +L+K + A + ++Q+ +L VV+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 45.9 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 16/136 (11%) Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +T A + + + VA R K ++ RRL ++ G A Sbjct: 774 ITRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQA 833 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETP 637 R +Q + D++ M + G+ +++ VHDE+V E P Sbjct: 834 A---ERAAINAP------MQGTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVP 884 Query: 638 DTPYFSV-GTLCSLMT 652 + V L +M Sbjct: 885 ENELSVVREKLPEMMC 900 >gi|167573600|ref|ZP_02366474.1| DNA polymerase I [Burkholderia oklahomensis C6786] Length = 923 Score = 273 bits (698), Expect = 7e-71, Method: Composition-based stats. Identities = 117/605 (19%), Positives = 205/605 (33%), Gaps = 113/605 (18%) Query: 7 DIETRSPQPL--PKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 351 DTETTSLDPMLAQIVGLSFSVEPGHAAYVPVAHRGPDLPAQLP----RDEVLAKLKPWLE 406 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + + ++ + GI + T + + + LAL Sbjct: 407 DASRKKLGQHLKYDAQVLVNH-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 464 Query: 122 LTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ GK F + +D EY D + T +L L Sbjct: 465 TIKYEDVAGKGAQQIGFDEVPLDKA----------------SEYAAEDADITLQLHHALY 508 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P D E + L+ + + G ID D + + IA +L+++ L Sbjct: 509 PQIAREPGLTRVYRDIEMPVSLVLRKMERTGVLIDSDRLSRQSSEIATRLVELEQEAYVL 568 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 G + + F + +V + S + +LA+D L +L Sbjct: 569 AGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHR 626 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 627 GLSKLKSTYTDKLPRMVNPNTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------- 678 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA+ G K+V AD + IE R++A I+ ++ ++A Sbjct: 679 -----------------AEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISEDESLLRA 721 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F +V+ +QR I KV+ L Y A L Sbjct: 722 FAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAKL 781 Query: 458 DLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKD 496 + ++ + + + E LW+ + A+ Sbjct: 782 YIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINA 841 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFAC----VVQEGGSISARR 542 + GTA +L+K + A + ++Q+ +L VV+E Sbjct: 842 PMQGTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVPENELSVVREKLPEMMCG 901 Query: 543 VANVP 547 VA + Sbjct: 902 VAKLK 906 Score = 45.9 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 16/136 (11%) Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 +T A + + + VA R K ++ RRL ++ G A Sbjct: 774 ITRDAAKLYIDRYFLRYPGVARYMEETRTRAKEKGYVETVFGRRLWLPEINGGNGPRRQA 833 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETP 637 R +Q + D++ M + G+ +++ VHDE+V E P Sbjct: 834 A---ERAAINAP------MQGTAADLIKLSMIAVDDWLERGGFAARMIMQVHDELVLEVP 884 Query: 638 DTPYFSV-GTLCSLMT 652 + V L +M Sbjct: 885 ENELSVVREKLPEMMC 900 >gi|109896347|ref|YP_659602.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] gi|109698628|gb|ABG38548.1| DNA polymerase I [Pseudoalteromonas atlantica T6c] Length = 928 Score = 273 bits (697), Expect = 8e-71, Method: Composition-based stats. Identities = 108/586 (18%), Positives = 201/586 (34%), Gaps = 99/586 (16%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A A+ + D P +L ++SA+ + L D+ V + +++ + Sbjct: 378 DAAYLPLAHDYVDAPQQL----DRSAVLALFKPLLEDKNKAKVGQHLKYDKNVLANY--- 430 Query: 87 DIPSKRWICTSVLART--NGLPSSLKNACLA---LNFSEHLTKMEEGKALIAR-FCKGSI 140 DI + ++L N + + LA L S + GK F + + Sbjct: 431 DINLQGIAYDTMLESYVLNSVATRHDMDSLAQYYLGLSTVHFEDIAGKGAKQLTFNQIPL 490 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-----------PLSDGERDLWL 189 D +Y D + T L + L++ E L Sbjct: 491 DQAA----------------QYAAEDADITLRLHNHIWQKLHQTPELASVLTEIEVPLAT 534 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + G ID + + + +A +L+ ++ +L + T L+ LF Sbjct: 535 VLAKMEQFGVLIDSQKLSQQSQDLATRIMQLEREVHELAGEEF-NLGSTKQLQEILFNKL 593 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303 + ++ + S S + +LA L +L + KL + L + ++ G Sbjct: 594 SLPVLKKTPKGAPST-SEEVLQELALTYPLPKLLMEFRVLSKLKNTYTDKLPKMINPRSG 652 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P + Sbjct: 653 RVHTSY-HQAITATGRLSSTEPNLQNIPIRT------------------------EQGRR 687 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR IA G K+V AD + IE R++A ++ ++ +KAF+ G+DI+ T A+ FN + + Sbjct: 688 VRQAFIARPGYKIVAADYSQIELRIMAHLSQDEGLLKAFSQGKDIHTATAAEVFNVSLTE 747 Query: 424 VSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST-STFEDWEQA 478 V+ EQR K + L Y A K + + + ED Sbjct: 748 VTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRHDAQHYMDLYFERYPGVLKYMEDSRIV 807 Query: 479 ESHHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + ++ + A+ + GTA +++KKA + Sbjct: 808 AKENGYVSTVFGRRLYLPDINASNGLRRKGAERAAINAPMQGTAADIIKKAMLKVDAWID 867 Query: 519 QLWKDLTEGFACVVQEGG-SISARRVANVPRLVMRRHKRDVHIVLP 563 L D T V E I + V N ++ ++ V + +P Sbjct: 868 TLPSDQTRMIMQVHDELIFEIKEQNVENDKNTIVDLMEKAVSLDVP 913 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M + +++ VHDE++ E + + T+ LM K Sbjct: 848 QGTAADIIKKAMLKVDAWIDTLPSDQTRMIMQVHDELIFEIKEQNVENDKNTIVDLMEKA 907 >gi|89092190|ref|ZP_01165144.1| DNA polymerase I [Oceanospirillum sp. MED92] gi|89083278|gb|EAR62496.1| DNA polymerase I [Oceanospirillum sp. MED92] Length = 922 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 95/581 (16%), Positives = 187/581 (32%), Gaps = 98/581 (16%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56 D ET S Y E A + ++A + + Sbjct: 349 DTETTSLN---------YME-AELVGVSFAIEPGKAAYVPVAHDYMGAPEQITRETLLEK 398 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS------SLK 110 + L V + ++ + + GI++ + T + + + SL Sbjct: 399 MKPLLESSDHKKVGQHLKYDMNVLARY-GIELTGIEF-DTMLESYVLNSTATRHDMDSLA 456 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + L L + +GK + + PY A+ E Sbjct: 457 DRYLGLKTIKFEDIAGKGKKQLTFNQIELEQAAPYAAEDADITLRLHQAINAQLSKDETL 516 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +F D ER L + I G +D ++ + +A+ +L+ + Sbjct: 517 TSVFN------DIERPLIPVLSHIERNGALVDASMLGEQSIELAERMVELERQAYDIAGK 570 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF I ++ + S + +LA D L +L ++ Sbjct: 571 EFNLA-SPKQLQQILFEELSIPVIKKTPKGAPSTAEE-VLQELALDYPLPKLILEHRSLS 628 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L ++ GR+ + + TGR S QN+P + Sbjct: 629 KLKSTYTDKLPLMINPGTGRIHTSY-HQAVTATGRLSSTDPNLQNIPVRT---------- 677 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G K+V AD + IE R++A ++ + + AF+ Sbjct: 678 --------------QEGRRIRHAFIAPEGYKVVAADYSQIELRIMAHLSQDQGLLDAFSK 723 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G DI+ T A+ F +D+VS +QR K + L Y AK ++ Sbjct: 724 GADIHRATAAEVFKVELDQVSDDQRRSAKAINFGLIYGMSAFGLAKQLGIARKDAAQYIE 783 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + + + D + ++ + + A+ + Sbjct: 784 HYFETYPGVQHYMDDIRAKAQEQGYVETLFGRRLYLPEIKARNAMRRQAAERTAINAPMQ 843 Query: 500 GTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQE 534 GTA +++K+A W A+ +++ + + V++ Sbjct: 844 GTAADIIKRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRD 884 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNATK----NGYDI--VLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 Q + DI+ M K + +D+ ++ VHDE+V E DT S V + M Sbjct: 843 QGTAADIIKRAMVTVDKWLAESDFDVRMIMQVHDELVFEVRDTQVDSFVEAVKDKMATA 901 >gi|332109892|gb|EGJ10520.1| DNA-directed DNA polymerase [Rubrivivax benzoatilyticus JA2] Length = 915 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 103/601 (17%), Positives = 189/601 (31%), Gaps = 113/601 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDL-LQY-- 60 ID ET S +P+ A I ++A + P L L Sbjct: 341 AIDTETDSLEPMK----------ARIVGISFAVEPGRGAYVPLAHAGPDAPEQLPLDAVL 390 Query: 61 ------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + + N ++R +F GI + R T + + L Sbjct: 391 ARLKPWLEDASRAKLGQNLKYDRHVFANA-GIALAGVR-HDTMLESYVLEAHKPHSLESL 448 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 A E C ++ P+ EY D E + Sbjct: 449 AERHLGRKGLSYED------LCGKGVNQIPFAQVDV------ARATEYSAEDSEMALHVH 496 Query: 175 KRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P + E + + I G +D + + +A+ L+++ Sbjct: 497 QVLWPEIEADAGLRRVYEAIEMPVAEVLARIERHGVLVDPQELARQSRDLAERMVALEQE 556 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + + + + LF G+ + + S +T+LA D L Sbjct: 557 VYAIAEQPF-NLGSPKQIGEILFGKLGLPVKKRTASGAPST-DEDVLTELAADYPLPARI 614 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL + L V+ GR+ + TGR + QN+P + Sbjct: 615 LEHRSLAKLKGTYTDKLPAMVNPATGRVHTNYA-QAVAVTGRLASNEPNLQNIPIRT--- 670 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 VR +A G ++ AD + IE R++A I+ ++ Sbjct: 671 ---------------------PEGRRVRRAFVAPPGHVILSADYSQIELRIMAHISEDEG 709 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 ++AF+ G D++ T A+ F P+ +V+ EQR KV+ L Y G A Sbjct: 710 LLRAFSEGLDVHRATAAEVFGMPLAEVTSEQRRYAKVINFGLIYGMGAYGLAANLGIEQK 769 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQ----------YPEF 492 + ++ + D + + LW+ + Sbjct: 770 AAKDYIDRYFARFAGVKRYMDETRVRAKEKGYVETVFGRRLWLPEINSGNGPRRSGAERQ 829 Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A+ + GTA +L+K A A + V+Q+ +L + + R Sbjct: 830 AINAPMQGTAADLIKLAMIAVQKELDASGRATRMVMQVHDELVLEVPEAELDWAKDAIPR 889 Query: 543 V 543 + Sbjct: 890 L 890 Score = 45.1 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMT 652 Q + D++ M K +V+ VHDE+V E P+ ++ + LM Sbjct: 836 QGTAADLIKLAMIAVQKELDASGRATRMVMQVHDELVLEVPEAELDWAKDAIPRLMA 892 >gi|254673763|emb|CBA09444.1| DNA polymerase I [Neisseria meningitidis alpha275] Length = 931 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 105/594 (17%), Positives = 201/594 (33%), Gaps = 95/594 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + +S D R+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPDMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A K + ++Q+ +L + ++ Sbjct: 851 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVVETELDFVKEKLPQI 904 >gi|91787611|ref|YP_548563.1| DNA polymerase I [Polaromonas sp. JS666] gi|91696836|gb|ABE43665.1| DNA polymerase I [Polaromonas sp. JS666] Length = 944 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 100/600 (16%), Positives = 191/600 (31%), Gaps = 112/600 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD--- 56 +D ET S + A I +++ T + +P D Sbjct: 371 AVDTETTSLDEML----------AQIVGISFSVTPGEAAYIPLTHDYPDAPAQLPRDEVL 420 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L +L + + + + ++R +F GI++ T + + + A L Sbjct: 421 ARLKPWLENPAIAKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVHKPHGLASL 478 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 A G++ I + + N V + EY D + T ++ Sbjct: 479 AER--------HVGRSGINY---EDLCGKGVHQIKFNQVDIAKA-AEYSCEDSDQTLDVH 526 Query: 175 KRLIP---LSDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + L P +D R ++ L+ I G ID + K + +L+ + Sbjct: 527 RVLWPQIEANDKLRFVYELEMKSSETLYRIERNGVLIDAPTLAKQSGELGARIVQLEAEA 586 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + + F G+ +V + S + +LA+D L Sbjct: 587 HELAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPST-DEEVLEKLAEDYPLPAKIL 644 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L++ GR+ + TGR S QN+P Sbjct: 645 EHRGLSKLKGTYTDKLAQLAHPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIP------- 696 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR +A G + AD + IE R++A ++ ++ Sbjct: 697 -----------------VKTAEGRRVREAFVAPAGSVIASADYSQIELRIMAHLSEDEAL 739 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 ++AF G D++ T A+ F +D+VS EQR KV+ L Y A+ Sbjct: 740 LRAFTEGLDVHRATAAEVFGVAVDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIETKA 799 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ Q + D + + + A Sbjct: 800 AAAYIDRYFQRYPGVKHYMDETRLSAKSKGYVETVFGRRLYLPEINSPNGPRRGGAERAA 859 Query: 494 VKDKLIGTACELVK----------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + GTA +L+K A + + ++Q+ +L E + R+ Sbjct: 860 INAPMQGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHDELVFEVPEAEVEWVRVEIPRI 919 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMT 652 Q + D++ M K +++ VHDE+V E P+ V + +M Sbjct: 865 QGTAADLIKLSMVKVQEVLDAEKRATKMIMQVHDELVFEVPEAEVEWVRVEIPRIMA 921 >gi|261364888|ref|ZP_05977771.1| DNA polymerase I [Neisseria mucosa ATCC 25996] gi|288566937|gb|EFC88497.1| DNA polymerase I [Neisseria mucosa ATCC 25996] Length = 933 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 106/575 (18%), Positives = 199/575 (34%), Gaps = 95/575 (16%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 355 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 410 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 411 PHLENPVLKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 466 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D Sbjct: 467 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLEAHL-RAQMDA-KQL 524 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ G Sbjct: 525 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYA-AAGQ 577 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 578 LFNLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 637 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 638 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 686 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 687 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 732 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 733 GEDVHCRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 792 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 793 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 852 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524 GTA +L+K+A + + ++Q+ +L Sbjct: 853 GTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDEL 887 >gi|264677057|ref|YP_003276963.1| DNA polymerase I [Comamonas testosteroni CNB-2] gi|262207569|gb|ACY31667.1| DNA polymerase I [Comamonas testosteroni CNB-2] Length = 931 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 105/600 (17%), Positives = 186/600 (31%), Gaps = 112/600 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDL------ 57 +D ET S + A I +++ E +P L Sbjct: 358 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLNMDMVL 407 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L D + + +++ +F GI + T + + L Sbjct: 408 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 465 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL E C + P+ + A+ D + T ++ Sbjct: 466 ALRHVSRSGISYED------LCGKGKNQIPFAQVSVDKAAAYS------CEDSDQTLDVH 513 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P + + E I G ID + + + KL+E+ Sbjct: 514 NTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 573 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ S L F G+ +V + T + +LA+D L Sbjct: 574 YEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAKLL 631 Query: 285 SGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L++ A+ SDGR+ + TGR S QN+P + Sbjct: 632 EHRSLSKLKGTYTDKLAQMALPSDGRVHTHYA-QAVAVTGRLSSNDPNLQNIPVRT---- 686 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR +A GK + AD + IE R++A ++G++ Sbjct: 687 --------------------PEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEAL 726 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF NG D++ T A+ F +D+VS EQR KV+ L Y AK Sbjct: 727 LSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 786 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ Q + D +H + A Sbjct: 787 AAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAA 846 Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543 + + GTA +L+KKA A ++Q+ +L ++ + Sbjct: 847 INAPMQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAEIPSI 906 >gi|71905805|ref|YP_283392.1| DNA polymerase A [Dechloromonas aromatica RCB] gi|71845426|gb|AAZ44922.1| DNA polymerase A [Dechloromonas aromatica RCB] Length = 906 Score = 273 bits (697), Expect = 9e-71, Method: Composition-based stats. Identities = 97/556 (17%), Positives = 178/556 (32%), Gaps = 101/556 (18%) Query: 44 LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + D+ + + + L +L V N+ +++ +F GI + T + + Sbjct: 371 VADQLPREEVLARLKSWLESAAHKKVLQNAKYDQHVFANH-GIALSGIA-HDTMLQSYVI 428 Query: 104 GLPSSLKNACL---ALNFSEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLF 159 L L + + GK F + I + Sbjct: 429 ESDKGHDLGQLCTRHLGLATIAYEDLCGKGAKQITFDQVDI----------------ERA 472 Query: 160 GEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T + L P + E + I G ID D++ + Sbjct: 473 ATYAAEDSDVTLRVHNVLHPQFASEPGLSRIYHEIEMPARQVIWQIERNGILIDSDVLSR 532 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + Q+ L+ +L + L LF G+ + + S Sbjct: 533 QSHEMGQKIMALEAQAYELAGQPFNLA-SPKQLADILFEKQGLPVKKKTPSGGPST-DEE 590 Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 +++LA D L +L ++ KL + L V+ GR+ A TGR + Sbjct: 591 VLSELALDYPLPKLLLEHRSLSKLKGTYTDKLPRMVNPQTGRVHTHFS-QAAVVTGRLAS 649 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R+ IA G +V AD + Sbjct: 650 SDPNLQNIPVRS------------------------EEGRKIRTAFIAPAGSSIVSADYS 685 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++G++ + AFA+GED++ T + F +V +QR + K + L Y Sbjct: 686 QIELRIMAHLSGDERLLDAFAHGEDVHKATAGEIFGVTPLEVGPDQRRVAKSINFGLIYG 745 Query: 443 GG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLW--- 484 A+ S + ++ + + + E A LW Sbjct: 746 MSAFGLARQLGLERSAAQTYIDRYFARYPGVARYMEEARESARQHGYVETAFGRRLWFPD 805 Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEG 527 + A+ + GTA +L+K A A K + +LQ+ +L Sbjct: 806 IRSSNGNRRQGAERAAINAPMQGTAADLIKLAMIAVQNWLEKSALKSRLILQVHDELLLE 865 Query: 528 FACVVQEGGSISARRV 543 R+ Sbjct: 866 VPDGELMDVRTHLPRL 881 >gi|296314737|ref|ZP_06864678.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] gi|296838474|gb|EFH22412.1| DNA polymerase I [Neisseria polysaccharea ATCC 43768] Length = 930 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 106/594 (17%), Positives = 200/594 (33%), Gaps = 95/594 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 352 TIGIDTETTSLDAMDASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 407 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 408 PHLENPVLKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 463 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D Sbjct: 464 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 521 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAASQP 575 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 634 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 635 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 730 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 789 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 849 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A K + ++Q+ +L + ++ Sbjct: 850 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQI 903 >gi|307319227|ref|ZP_07598656.1| DNA polymerase I [Sinorhizobium meliloti AK83] gi|306895063|gb|EFN25820.1| DNA polymerase I [Sinorhizobium meliloti AK83] Length = 1004 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 98/552 (17%), Positives = 180/552 (32%), Gaps = 101/552 (18%) Query: 37 WDDEPVKLWDRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 PV S +P S L + L D +V+ V N + ++ K+ GI + S Sbjct: 460 LGGGPV-------DSQVPVREALSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSF 511 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 G + ++ ++ D +A Sbjct: 512 DDTMLMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDVTGTGRSSLTFDF----VDIDKAT 567 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 Y D + L+ L P ER L + + +RG + Sbjct: 568 A---------YAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITV 618 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D ++ +L +AQ L+++I +L L LF G+ ++ T Sbjct: 619 DRQILSRLSGELAQGAAALEDEIYRLAGETFTI-GSPKQLGDILFGKMGLPGGSKTK-TG 676 Query: 262 KSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGA 314 + S + LA L R + KL + L V + R+ A Sbjct: 677 QWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAM-AA 735 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + +R+ +A+ G Sbjct: 736 TTTGRLSSSDPNLQNIPIRT------------------------GEGRKIRTAFVATPGH 771 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P+D + E R K Sbjct: 772 KLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKA 831 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474 + + Y G A S G ++++ + + + Sbjct: 832 INFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIF 891 Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKD 523 + S + M+ ++ + G+A +++++A + ++ Sbjct: 892 GRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQ 951 Query: 524 LTEGFACVVQEG 535 + + V++G Sbjct: 952 VHDELIFEVEDG 963 >gi|239814549|ref|YP_002943459.1| DNA polymerase I [Variovorax paradoxus S110] gi|239801126|gb|ACS18193.1| DNA polymerase I [Variovorax paradoxus S110] Length = 940 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 103/595 (17%), Positives = 188/595 (31%), Gaps = 104/595 (17%) Query: 6 IDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 ID ET S + VGV E A A+ + D P +L + + L +L Sbjct: 368 IDTETTSLDEMVARIVGVSFSIEPGAAAYVPLAHNYPDAPAQLP----FDEVLARLKPWL 423 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + + + ++R +F GI++ T + + A LA Sbjct: 424 ENPAKKKLGQHIKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEAHRPHGLASLAERHL-- 479 Query: 122 LTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 G++ I+ C P+ EY D + T ++ L P Sbjct: 480 ------GRSGISYEDLCGKGAHQIPFSQVDI------AKAAEYSCEDSDQTLDVHLALWP 527 Query: 180 LSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + + L + Q + G ID + + L+++ ++ Sbjct: 528 QIERDEKLRFIYQLEMDSSEALYRVERNGVLIDAPTLAAQSHELGTRIMALEQEAYEIAG 587 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + F G+ +V + S + +LA+D L + Sbjct: 588 QPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPST-DEEVLEKLAEDYPLPAKILEHRGL 645 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + + GR+ + TGR S QN+P + Sbjct: 646 SKLKGTYTDKLGQLANPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT--------- 695 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR IA G + AD + IE R++A I+G++ ++AF Sbjct: 696 ---------------PEGRRVREAFIAPPGSVIASADYSQIELRIMAHISGDESLLRAFR 740 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G D++ T A+ F D+VS EQR KV+ L Y A+ + Sbjct: 741 EGIDVHRATAAEVFGATPDQVSSEQRRYAKVINFGLIYGMSSFGLARNLGIETKAAASYI 800 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498 ++ + D +A + + A+ + Sbjct: 801 DRYFARYPGVKAYMDETKALAKEKGYVETVFGRRLYLPEINSPNGPRRGGAERAAINAPM 860 Query: 499 IGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K + + + ++Q+ +L E R+ Sbjct: 861 QGTAADLIKLSMIKVQNVLDEEKRATRMIMQVHDELVFEVPEAEIEWVRTEIPRL 915 >gi|298369714|ref|ZP_06981031.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] gi|298282271|gb|EFI23759.1| DNA polymerase I [Neisseria sp. oral taxon 014 str. F0314] Length = 929 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 107/594 (18%), Positives = 201/594 (33%), Gaps = 95/594 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 K+ ID ET S L + + A +AV ++ P +L D + L Sbjct: 351 KIGIDTETTSLDAMNAALVGISIAFQAGKAVYIPVGHSLTAAPEQL-DL---QYVLGYLK 406 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 407 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 462 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D Sbjct: 463 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 520 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 521 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 574 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 575 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 633 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 634 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 682 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 683 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 728 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 729 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 788 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 789 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 848 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A K + ++Q+ +L + ++ Sbjct: 849 GTASDLIKRAMIDVSRWLVSDDLKSKLIMQVHDELVLEVPEAELDSVKEKLPQI 902 >gi|308390081|gb|ADO32401.1| DNA polymerase I [Neisseria meningitidis alpha710] gi|325135575|gb|EGC58193.1| DNA polymerase I [Neisseria meningitidis M0579] gi|325201379|gb|ADY96833.1| DNA polymerase I [Neisseria meningitidis M01-240149] gi|325207360|gb|ADZ02812.1| DNA polymerase I [Neisseria meningitidis NZ-05/33] Length = 929 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 104/593 (17%), Positives = 200/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +A+ ++ P + D + L Sbjct: 352 TIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTAAP-EQIDL---QDVLGRLK 407 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 408 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 463 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D Sbjct: 464 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 521 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ + Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELSRQSAELGAELMKLEQEAYAVAGQP 575 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 634 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 635 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLITAFQN 729 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 730 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKTFID 789 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 849 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 850 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 902 >gi|329888727|ref|ZP_08267325.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] gi|328847283|gb|EGF96845.1| DNA polymerase I family protein [Brevundimonas diminuta ATCC 11568] Length = 964 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 94/559 (16%), Positives = 171/559 (30%), Gaps = 101/559 (18%) Query: 41 PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 P++ D + + L L D +V+ V N ++ + + G+ + + Sbjct: 426 PLQQID---KPTALARLKDLLEDPSVLKVGQNIKYDLAVMAR-RGVRVAPIDDVMLISYV 481 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAW 156 GL + L+ + GK+ F + S Sbjct: 482 LEGGLHGHGMDELARLHLGHEPIPFKSVAGTGKSQ-KSFKHVELKSAVC----------- 529 Query: 157 QLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLV 206 Y D + T L + L P ER + + + G R+D D + Sbjct: 530 -----YAAEDADVTLRLHRLLKPRLAAEGLSNVYETLERGMPAVLADMERAGVRVDPDRL 584 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L Q +L+E+ KL + + LF + + + Sbjct: 585 RSLSSTFGQRMAELEEEAHKLAGRPF-NVGSPRQIGEILFGEMNLPGGKKTASG-QWGTD 642 Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 S + LA+ L R + KL + L A+ T A+ TGR + Sbjct: 643 ASVLEDLAQSHPLPRTILDWRQLSKLKGTYTDALVAAMDPQTNRVHTSYQLAAATTGRLA 702 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + + +R IAS G L+ AD Sbjct: 703 SSDPNLQNIPIRTET------------------------GRQIRQAFIASPGHVLISADY 738 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA I +AF +G DI+ T ++ F P++ + E R K + + Y Sbjct: 739 SQIELRLLAHIGDIPELKRAFKSGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIIY 798 Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------ 485 G A G ++ + + + D +A Sbjct: 799 GISAFGLAAQLGIDQGEAGAYIKTYFERFPGIRDYMDRTKALVKEQGFVTTVFGRRIHIP 858 Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTE 526 + A+ + G A +++++A + + +LQ+ +L Sbjct: 859 AIHSKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPGALAEAGLQTRMLLQVHDELVF 918 Query: 527 GFACVVQEGGSISARRVAN 545 E RR+ Sbjct: 919 EAPEAEAERAVAVIRRIME 937 >gi|15963928|ref|NP_384281.1| DNA polymerase I [Sinorhizobium meliloti 1021] gi|15073103|emb|CAC41562.1| Probable DNA polymerase I [Sinorhizobium meliloti 1021] Length = 1004 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 98/552 (17%), Positives = 180/552 (32%), Gaps = 101/552 (18%) Query: 37 WDDEPVKLWDRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 PV S +P S L + L D +V+ V N + ++ K+ GI + S Sbjct: 460 LGGGPV-------DSQVPGRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSF 511 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 G + ++ ++ D +A Sbjct: 512 DDTMLMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDVTGTGRSSLTFDF----VDIDKAT 567 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 Y D + L+ L P ER L + + +RG + Sbjct: 568 A---------YAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITV 618 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D ++ +L +AQ L+++I +L L LF G+ ++ T Sbjct: 619 DRQILSRLSGELAQGAAALEDEIYRLAGETFTI-GSPKQLGDILFGKMGLPGGSKTK-TG 676 Query: 262 KSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGA 314 + S + LA L R + KL + L V + R+ A Sbjct: 677 QWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAM-AA 735 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + +R+ +A+ G Sbjct: 736 TTTGRLSSSDPNLQNIPIRT------------------------GEGRKIRTAFVATPGH 771 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P+D + E R K Sbjct: 772 KLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKA 831 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474 + + Y G A S G ++++ + + + Sbjct: 832 INFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIF 891 Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKD 523 + S + M+ ++ + G+A +++++A + ++ Sbjct: 892 GRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQ 951 Query: 524 LTEGFACVVQEG 535 + + V++G Sbjct: 952 VHDELIFEVEDG 963 >gi|83313310|ref|YP_423574.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] gi|82948151|dbj|BAE53015.1| DNA polymerase I [Magnetospirillum magneticum AMB-1] Length = 928 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 84/495 (16%), Positives = 157/495 (31%), Gaps = 81/495 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D +V+ V HN ++ + G+ + A + L Sbjct: 406 LKPLLADPSVLKVGHNIKYDMQVMAMQ-GLAVEPFDDTMLLSYALDGASHGHGLDELCLL 464 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + E C + +D + + + D + T L Sbjct: 465 HLGHANIPFSEV-------CGSGRNQVTFDRVPLDKARDY------AAEDADMTLRLHAL 511 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P ER L + + G ++D ++ L E + +L+ +++ Sbjct: 512 LKPRLLSERMVSVYETLERPLVPVIAAMERDGIKVDRAQLMALSEDFGRRLTELETEVIA 571 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L +G + L LF + ++ T + + +LA L Sbjct: 572 LNNGEAFNLGSPQQLGKVLFETLNLPGGKKTK-TGQWATGADVLEELAPLHALPARLLDW 630 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L ++ GR+ + A+ TGR S QN+P + Sbjct: 631 RQLSKLKGTYTDALVAQINPATGRVHTSYSL-AATTTGRLSSSDPNLQNIPIRT------ 683 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A GKKLV AD + IE R++A +A Sbjct: 684 ------------------EEGRKIRHAFVAEPGKKLVSADYSQIELRLVAHVAEIAGLRD 725 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AFA+G DI+ T ++ F P+D + R K + + Y G A Sbjct: 726 AFAHGADIHAITASQVFGVPLDGIDPALRRRAKAINFGIIYGISAFGLAAQLGIPQGEAK 785 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 ++ + + + + E+ + M+ A+ Sbjct: 786 AYIEAYFARYPEIRAYMERTKEEARDQGFVTTLFGRKVFTPGIKDKNGAMRAFAERAAIN 845 Query: 496 DKLIGTACELVKKAW 510 + G A +++K+A Sbjct: 846 GPIQGGAADIIKRAM 860 >gi|319409706|emb|CBY90010.1| DNA polymerase I (POL I) [Neisseria meningitidis WUE 2594] Length = 938 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 104/551 (18%), Positives = 190/551 (34%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 851 GTASDLIKRAM 861 >gi|307306340|ref|ZP_07586084.1| DNA polymerase I [Sinorhizobium meliloti BL225C] gi|306902182|gb|EFN32779.1| DNA polymerase I [Sinorhizobium meliloti BL225C] Length = 1004 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 98/552 (17%), Positives = 180/552 (32%), Gaps = 101/552 (18%) Query: 37 WDDEPVKLWDRTEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 PV S +P S L + L D +V+ V N + ++ K+ GI + S Sbjct: 460 LGGGPV-------DSQVPVRETLSRLKELLEDPSVLKVGQNLKYGYLVMKRH-GIAMRSF 511 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 G + ++ ++ D +A Sbjct: 512 DDTMLMSYVLDAGNGAHGMDSLAERWLGHTPIAYKDVTGTGRSSLTFDF----VDIDKAT 567 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 Y D + L+ L P ER L + + +RG + Sbjct: 568 A---------YAAEDADIALRLWHVLKPRLAAKGLTRVYERLERPLISVLAGMEERGITV 618 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D ++ +L +AQ L+++I +L L LF G+ ++ T Sbjct: 619 DRQILSRLSGELAQGAAALEDEIYRLAGETFTI-GSPKQLGDILFGKMGLPGGSKTK-TG 676 Query: 262 KSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGA 314 + S + LA L R + KL + L V + R+ A Sbjct: 677 QWSTSAQVLEDLAAAGHDLPRKIVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFAM-AA 735 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + +R+ +A+ G Sbjct: 736 TTTGRLSSSDPNLQNIPIRT------------------------GEGRKIRTAFVATPGH 771 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 KLV AD + IE RVLA +A +AFA+G DI+ T ++ F P+D + E R K Sbjct: 772 KLVSADYSQIELRVLAHVADIPQLRQAFADGVDIHAMTASEMFGVPVDGMPSEIRRRAKA 831 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474 + + Y G A S G ++++ + + + Sbjct: 832 INFGIIYGISAFGLANQLSIERSEAGDYIKRYFERFPGIRDYMENTKAFARENGYVETIF 891 Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKD 523 + S + M+ ++ + G+A +++++A + ++ Sbjct: 892 GRRAHYPDIRSSNPSMRAFNERASINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQ 951 Query: 524 LTEGFACVVQEG 535 + + V++G Sbjct: 952 VHDELIFEVEDG 963 >gi|325206887|gb|ADZ02340.1| DNA polymerase I [Neisseria meningitidis M04-240196] Length = 938 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 106/551 (19%), Positives = 191/551 (34%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I S+LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDSMLASYIIESHLGHGLD-ELSG 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 851 GTASDLIKRAM 861 >gi|325143690|gb|EGC66009.1| DNA polymerase I [Neisseria meningitidis M01-240013] Length = 983 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 107/552 (19%), Positives = 192/552 (34%), Gaps = 85/552 (15%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 K+ ID ET S L + + A +AV ++ P +L D + L Sbjct: 397 EKIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGHL 452 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110 YL + + + N +++ +F I ++LA +GL L Sbjct: 453 KPYLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELS 508 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + + +G I + Y A+ + + D E Sbjct: 509 ERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQ 566 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 567 LEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQ 620 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 621 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSL 679 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 680 AKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT--------- 729 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 730 ---------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 774 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 775 NGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 834 Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498 ++ + + + ++ + + A+ + Sbjct: 835 DRYFDRYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPM 894 Query: 499 IGTACELVKKAW 510 GTA +L+K+A Sbjct: 895 QGTASDLIKRAM 906 >gi|115315303|ref|YP_764026.1| DNA polymerase I [Francisella tularensis subsp. holarctica OSU18] gi|115130202|gb|ABI83389.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] Length = 897 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 102/558 (18%), Positives = 185/558 (33%), Gaps = 89/558 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D + VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKPLFADSKKVKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDIDSL 430 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + EHL IA K D ++ +Y D + T LF Sbjct: 431 S---KEHLGIEPIAYTAIAGTGKQQQTLDQVDI---------EIVAKYAAEDADITFRLF 478 Query: 175 KRLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L ++ + G +ID +++ + K+L+ Sbjct: 479 NHFKALLEQDKVLFKLYCELEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESK 538 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 L S LR LF G+ V + + S + QLA+D + L Sbjct: 539 CYNLAGQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALI 596 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + + ++GR+ + G + TGR S QN+P + Sbjct: 597 MKYRHLSKLKNTYTDKLPKMLDANGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS---- 651 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA +G +V AD + IE R++A ++ + Sbjct: 652 --------------------PEGRKIREAFIAEDGYCIVAADYSQIELRIMAHLSKDKNL 691 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +K F DI+ T A+ ID+VS EQR K + L Y A+ + + Sbjct: 692 LKVFNQNLDIHSATAAEVLGISIDEVSSEQRRKAKAINFGLIYGMSAFGLARQLEIPRAE 751 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + S + + S ++ ++ A Sbjct: 752 AQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAA 811 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++KKA + + Q + ++ + V V + + Sbjct: 812 INAPMQGTAADIIKKAMINVNMMISQ-------EYNSEIKMVMQVHDELVFEVKKTKLEE 864 Query: 554 HKRDVHIVLPSSRRLVYS 571 + ++ ++ +L Sbjct: 865 IVAKIKSIMEAAVKLNVP 882 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M N + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMINVNMMISQEYNSEIKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|119503603|ref|ZP_01625686.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] gi|119460665|gb|EAW41757.1| DNA polymerase I [marine gamma proteobacterium HTCC2080] Length = 909 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 98/579 (16%), Positives = 184/579 (31%), Gaps = 110/579 (18%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + V + ++A A+ + P +L ++ + + L L Sbjct: 336 DTETTSLDYMQAEIVGVALAVATDRAAYIPLAHDYPGAPEQL----DRDLVLTRLRPLLE 391 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEH 121 D V N ++ + GI + + + + S LAL + Sbjct: 392 DSQRAKVGQNLKYDANVLANY-GIALRGIA-HDSMLESYVLDATGSRHDMDTLALKYLGE 449 Query: 122 LTKMEE---GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 T E GK F +I + Y D T +L + L Sbjct: 450 KTTHFEEVAGKGAKQITFNAVAI----------------EQAAPYAAEDAAVTLKLHQTL 493 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P D E L + I G R+D L+ + + L++ Sbjct: 494 WPKLESEAYLSTLYRDIELPLVPILSRIERNGARVDRQLLADQSHELGERLAILEQSAHD 553 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + L LF + ++ + S + + +LA D L + Sbjct: 554 LAGQAF-NLGSPKQLGEILFQKLELPVLKKTPKGAPST-AEDVLAELALDYPLPAVLMEY 611 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ KL + L + + GR+ + + TGR S QN+P + Sbjct: 612 RSLSKLRSTYTDRLPDMIDPGTGRVHTSY-HQAVTATGRLSSSDPNLQNIPIRT------ 664 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R A G+ +V AD + IE R++A ++ + + Sbjct: 665 ------------------AEGRRIRQAFCAPEGRSIVAADYSQIELRIMAHLSQDKGLLG 706 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AF D++ T A+ F P++ VS +QR K + L Y AK + Sbjct: 707 AFGANLDVHSATAAEVFGVPLEDVSSDQRREAKAINFGLIYGMSAFGLAKQLRLGRHEAQ 766 Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495 + ++ + + + + + + Q A+ Sbjct: 767 AYIDRYFERYPGVADYMTQTRELAHSQGYVETLFGRRLYLPEINARNKQRQMAAERTAIN 826 Query: 496 DKLIGTACELVKKAWRAKHQ----------GVLQLWKDL 524 + GTA +++K A A + ++Q+ +L Sbjct: 827 APMQGTAADIIKLAMIAVDEWLSKTDIDALMIMQVHDEL 865 Score = 40.5 bits (93), Expect = 0.87, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNATK--NGYDI----VLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ M + + DI ++ VHDE+V E DT ++ + LM Sbjct: 830 QGTAADIIKLAMIAVDEWLSKTDIDALMIMQVHDELVFEVADTEVATLTSAIPDLMADV 888 >gi|325127400|gb|EGC50333.1| DNA polymerase I [Neisseria meningitidis N1568] Length = 937 Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats. Identities = 103/551 (18%), Positives = 189/551 (34%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 352 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 407 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 408 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 463 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D Sbjct: 464 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLEAHL-RAQMDA-KQL 521 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 575 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 634 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 635 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 730 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 789 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINAPMQ 849 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 850 GTASDLIKRAM 860 >gi|325923784|ref|ZP_08185399.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] gi|325545717|gb|EGD16956.1| DNA polymerase I [Xanthomonas gardneri ATCC 19865] Length = 933 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 97/577 (16%), Positives = 183/577 (31%), Gaps = 106/577 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S PL +G+ AE QA + + P +L E+ + L L Sbjct: 360 DTETDSLDPLQADLIGLSVAAEPGQAAYLPFGHNFPGAPAQL----ERRQALAQLAPLLT 415 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 D V + + ++ + ++ GI + T + + + LA + Sbjct: 416 DPAVRKLGQHGKYDLHVMRRH-GIALAGYSD-DTLLQSFVLNSGSARHDMDSLAKRYL-- 471 Query: 122 LTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 G + C P+ + + D + T L L P Sbjct: 472 ------GYDTVKYEDVCGKGAKQIPFAQISLDDATRY------AAEDADITLRLHHVLGP 519 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + E L + I G +D + + +++ + +L Sbjct: 520 KLAAEPGLERVYREIEMPLVEVLARIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA 579 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L+ LF + V + S + + +A L R+ Sbjct: 580 GRTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRG 637 Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L E + GR+ + GA+ TGR S QN+P + Sbjct: 638 LTKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------ 690 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G+KL+ D + IE R++A ++G+ + AF Sbjct: 691 ------------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAF 732 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G D++ T A+ F ID VS ++R K + L Y A+ Sbjct: 733 ESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDY 792 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 + + F + + ++ + A+ Sbjct: 793 IALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAP 852 Query: 498 LIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + GTA +++K+A + +LQ+ +L Sbjct: 853 MQGTAADIIKRAMVSVDAWIADHAEHALMILQVHDEL 889 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 57/172 (33%), Gaps = 10/172 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 741 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 800 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 801 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 860 Query: 610 LCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M + ++L VHDE+V E + +G + + M+ Sbjct: 861 IKRAMVSVDAWIADHAEHALMILQVHDELVFEADADFVDTLLGEVTARMSAA 912 >gi|158426088|ref|YP_001527380.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] gi|158332977|dbj|BAF90462.1| DNA polymerase A [Azorhizobium caulinodans ORS 571] Length = 1020 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 104/602 (17%), Positives = 190/602 (31%), Gaps = 103/602 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-RTEQSAMPSDL---- 57 D ET S L V + +A A+ V D + +P + Sbjct: 436 DTETTSLDPMQADLVGVSLALAPNEACYIPLAH------VGAGDGLFTEGLLPGQIPFND 489 Query: 58 -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 L D + + HN ++ + + GI + A G + Sbjct: 490 ALAALKGMLEDGGTLKIGHNVKYDAAVLARH-GITVAPYDCTMCMSYALDAGRGGHGMDE 548 Query: 113 CLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKRD 166 E GK+ I F + +++ ++ W++ Sbjct: 549 LSIKYLGHTPIAFTEVAGKGKSQIT-FDRVPLEAATAYAAEDADVTLRLWRVLKPRLPS- 606 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E +++ L ER L + + RG ID + +L AQ +L+++I Sbjct: 607 -EGMTTVYETL------ERPLIAVLARMEARGISIDRATLARLSSEFAQGAARLEDEISG 659 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285 L I + + LF + + T + + +LA+ L + + Sbjct: 660 LAGEKI-NVGSPKQIGDLLFGKMQLPGATKTP-TGAWSTKANVLDELAEAGHELPQKILA 717 Query: 286 GSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L V+ T A+ TGR S QN+P + Sbjct: 718 WRQLSKLRSTYTDALPNYVNPTTHRVHTSYALAATTTGRLSSSEPNLQNIPIRT------ 771 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A G KLV AD + IE R+LA IA + Sbjct: 772 ------------------EEGRRIRRAFVAVPGTKLVSADYSQIELRLLAEIAEIPALRQ 813 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +G DI+ T ++ F P++ + E R K + + Y G A G Sbjct: 814 AFRDGIDIHAMTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLANQLGIPRDEAG 873 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 ++++ + + D + + + ++ A+ Sbjct: 874 QYIKRYFERFPGIRAYMDETRAYCREHGYVETLFGRRCHYPDIAASNPSIRAFNERAAIN 933 Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 +L GTA +++++A + +LQ+ +L E RRV Sbjct: 934 ARLQGTAADIIRRAMIRMEGALADAGLSARMLLQVHDELVFEVPDAEVEATLPVVRRVME 993 Query: 546 VP 547 Sbjct: 994 TA 995 Score = 40.5 bits (93), Expect = 0.98, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKN 654 Q + DI+ M ++L VHDE+V E PD ++ + +M Sbjct: 937 QGTAADIIRRAMIRMEGALADAGLSARMLLQVHDELVFEVPDAEVEATLPVVRRVMETA 995 >gi|254670866|emb|CBA07349.1| DNA polymerase I [Neisseria meningitidis alpha153] Length = 930 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 107/593 (18%), Positives = 200/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 851 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903 >gi|9858145|gb|AAG01015.1|AF288383_1 DNA polymerase I [Burkholderia pseudomallei] Length = 615 Score = 272 bits (695), Expect = 1e-70, Method: Composition-based stats. Identities = 115/606 (18%), Positives = 204/606 (33%), Gaps = 115/606 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ E A A+ D P +L + + + L +L Sbjct: 43 DTETTSLDPMRAQIVGLSFSVEPGHAAYVPVAHRGPDMPAQLP----RDEVLAKLTPWLE 98 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 D + + ++ + GI + T + + + LAL Sbjct: 99 DAGKKKLGQHLKYDAQVLANY-GIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLGVK 156 Query: 122 LTKME----EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K E +G I + V Q F EY D + T +L L Sbjct: 157 TIKYEDVAGQGAQQIGF----------------DEVPLAQAF-EYAAEDADITLQLHHAL 199 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P D E + L+ + + G ID D + + IA L+++ Sbjct: 200 YPQIAREPGLTRVYRDIELPVSLVLRKMERTGVLIDGDRLSRQSGEIATRLVALEQEAYA 259 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L G + + F + +V + S + +LA+D L +L Sbjct: 260 LAGGEF-NLGSPKQIGQIFFERLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEH 317 Query: 287 SAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L V+ D GR+ + TGR + QN+P + Sbjct: 318 RGLSKLKSTYTDKLPRMVNPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT------ 370 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A G K+V AD + IE R++ I+ ++ ++ Sbjct: 371 ------------------AEGRRIREAFVAPPGSKIVSADYSQIELRIMLHISEDESLLR 412 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 413 AFAHGEDIHRATAAEVFGVTPLEVTSDQRRIAKVINFGLIYGMSSFGLASNLGITRDAAK 472 Query: 457 LDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVK 495 L + ++ + + + + + LW+ + A+ Sbjct: 473 LYIDRYFLRYPGVARYMEETRMRAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAIN 532 Query: 496 DKLIGTACELVKKAWRAKH----------QGVLQLWK----DLTEGFACVVQEGGSISAR 541 + GTA +L+K + A + ++Q+ ++ E +V+E Sbjct: 533 APMQGTAADLIKLSMIAVDDWLERGGLRARMIMQVHDELVLEVPEDELSIVREKLPEMMC 592 Query: 542 RVANVP 547 VA + Sbjct: 593 GVAKLK 598 >gi|260551921|ref|ZP_05825783.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] gi|260405324|gb|EEW98819.1| DNA polymerase I (POL I) [Acinetobacter sp. RUH2624] Length = 923 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 107/562 (19%), Positives = 199/562 (35%), Gaps = 90/562 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QILAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEGLENQAM 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ D + + LF GI + T + S S + ++ L L Sbjct: 571 EIADETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLAEIILEHR 628 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 629 GLAKLKSTYTDRLVEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQESQNY 784 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844 Query: 498 LIGTACELVKKAWRAKHQGVLQ 519 L G+A +++K A A + + + Sbjct: 845 LQGSAADIIKLAMIAVDKILPK 866 >gi|319406408|emb|CBI80048.1| DNA polymerase I [Bartonella sp. 1-1C] Length = 968 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 90/536 (16%), Positives = 187/536 (34%), Gaps = 83/536 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L ++ V+ + N ++ ++ K+ I + S A G+ + + Sbjct: 442 LKPILENQAVLKIGQNIKYDWLVMKQH-NIVMCSFDDTMLLSYALEAGISTHGMDVLSER 500 Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEATR 171 ++ + I F + + Y A+ ++ WQ+ + Sbjct: 501 WLGHKPISYKDLTHSRRKIVSFARVDLKQATLYAAEDADITLRLWQVLKPQLV--AQKMT 558 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++++RL +R L + + +RG +D ++ +L +AQ L E+I +L Sbjct: 559 KIYERL------DRPLIEILARMEERGILVDRQILSRLSGELAQTVLNLGEEIYQLVGEK 612 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290 + L LF G+ ++ + S + +LA + IL R + Sbjct: 613 FNIA-SPKQLGDILFGKMGLPGGTKTKSG-QWSTSAQTLEELAAEGHILPRKIIDWRQLT 670 Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + + GR+ + TGR S QN+P + Sbjct: 671 KLKSTYTDALPSYILPTTGRVHTNYSLAT-TLTGRLSSSEPNLQNIPVRT---------- 719 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R+ +AS G L+ AD + IE R+LA +A +AFA Sbjct: 720 --------------AEGRKIRAAFVASKGHLLLSADYSQIELRILAHVADITALKEAFAK 765 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G+DI+ T ++ F ++ ++ E R K + + Y G A +Q Sbjct: 766 GQDIHAMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEASDYIQ 825 Query: 461 QFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKDKLI 499 + + + + + + H ++ A+ + Sbjct: 826 LYFERFPGIEDYMERTKIFARHYGYVETIFGRRIHYPEIKTDKPQIRSFNERAAINAPIQ 885 Query: 500 GTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 G+A +++++A R + +LQ+ +L + +I ++V Sbjct: 886 GSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESKKTTILIKKVME 941 >gi|121601792|ref|YP_988342.1| DNA polymerase I [Bartonella bacilliformis KC583] gi|120613969|gb|ABM44570.1| DNA polymerase I [Bartonella bacilliformis KC583] Length = 968 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 94/545 (17%), Positives = 187/545 (34%), Gaps = 101/545 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L ++ V+ + N ++ ++ ++ DI + + T +L+ G+ + + Sbjct: 442 LKPILENQAVLKIGQNMKYDWLVMRQY---DITIRSFDDTMLLSYVLDAGISTHGMDVLS 498 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR--ANHVQAWQLFGEYCKRDVEATRE 172 G IA + D + + + Y D + T Sbjct: 499 ERWL---------GHTPIAY------KNLTCDGKKIVSFAQVDLKQATLYAAEDADITLR 543 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L++ L P +R L + + +RG +D ++ L +AQ L+E Sbjct: 544 LWQVLKPQLVAQGMTKIYERLDRPLIEVLARMEERGILVDRQILSCLSGELAQAALSLEE 603 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I +L + L LF G+ ++G + S + +LA + +L R Sbjct: 604 EIYQLAGEQFNIA-SPKQLGDILFSKIGLPGGAKTKGG-QWSTSAQILEELAAEGHMLPR 661 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 I KL + L +S GR+ + TGR S QN+P + Sbjct: 662 KIVDWRQIAKLKSTYTDALPSYISPKTGRVHTNYSLAT-TSTGRLSSSEPNLQNIPIRTI 720 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R+ IAS G L+ AD + IE R+LA IA Sbjct: 721 ------------------------EGRKIRTAFIASEGCLLLSADYSQIELRLLAHIADI 756 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 +AFA G+DI+ T ++ F I+++S + R K + + Y G A Sbjct: 757 TALKEAFAQGQDIHAMTASQMFGVAIERMSSDVRRRAKAINFGIIYGISAFGLANQLGIS 816 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 ++ + + ++ + + + ++ ++ Sbjct: 817 REEASHYIRVYFERFPGIQSYMEATKIFARQHGYVETIFGRRIHYPEIKARDRQVRAFNE 876 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540 A+ + G+A +++++A + +LQ+ +L E Sbjct: 877 RAAINAPIQGSAADIIRRAMIQMEGALEKEGLSAKMLLQVHDELIFEIPKAESEKTKAIV 936 Query: 541 RRVAN 545 ++V Sbjct: 937 KKVME 941 >gi|299532523|ref|ZP_07045913.1| DNA polymerase I [Comamonas testosteroni S44] gi|298719470|gb|EFI60437.1| DNA polymerase I [Comamonas testosteroni S44] Length = 937 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 103/559 (18%), Positives = 177/559 (31%), Gaps = 102/559 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDL------ 57 +D ET S + A I +++ E +P L Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDMDMVL 413 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L D + + +++ +F GI + T + + L Sbjct: 414 ARLKPWLEDAGKKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL E C + P+ + A+ D + T ++ Sbjct: 472 ALRHVSRSGISYED------LCGKGKNQIPFAQVSVDKAAAYS------CEDSDQTLDVH 519 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P + + E I G ID + + + KL+E+ Sbjct: 520 NTLWPRIQAHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 579 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ S L F G+ +V + T + +LA+D L Sbjct: 580 YEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAKLL 637 Query: 285 SGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L++ A+ SDGR+ + TGR S QN+P + Sbjct: 638 EHRSLSKLKGTYTDKLAQMALPSDGRVHTHYA-QAVAVTGRLSSNDPNLQNIPVRT---- 692 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR +A GK + AD + IE R++A ++G++ Sbjct: 693 --------------------PEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEAL 732 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF NG D++ T A+ F +D+VS EQR KV+ L Y AK Sbjct: 733 LSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 792 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ Q + D +H + A Sbjct: 793 AAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAA 852 Query: 494 VKDKLIGTACELVKKAWRA 512 + + GTA +L+KKA A Sbjct: 853 INAPMQGTAADLIKKAMVA 871 >gi|225023896|ref|ZP_03713088.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] gi|224943370|gb|EEG24579.1| hypothetical protein EIKCOROL_00762 [Eikenella corrodens ATCC 23834] Length = 928 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 106/594 (17%), Positives = 200/594 (33%), Gaps = 95/594 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 K+ ID ET S L + + A +AV ++ P +L D + L Sbjct: 350 KIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 405 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 406 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 461 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + D Sbjct: 462 RWLGLETITYESLCGKGAKQIGFADVAIEQATEYAAQDADFALRLDAHL-RAQMDA-KQL 519 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 520 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 573 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 574 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 632 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 633 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 681 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 682 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 727 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 728 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 787 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 788 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 847 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + + ++Q+ +L + ++ Sbjct: 848 GTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQI 901 >gi|221068749|ref|ZP_03544854.1| DNA polymerase I [Comamonas testosteroni KF-1] gi|220713772|gb|EED69140.1| DNA polymerase I [Comamonas testosteroni KF-1] Length = 937 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 104/600 (17%), Positives = 186/600 (31%), Gaps = 112/600 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-EQSAMPSDL------ 57 +D ET S + A I +++ E +P L Sbjct: 364 ALDTETDSLDEMV----------ARIVGISFSVAVGEAAYIPLRHEGMDVPEQLDLDKVL 413 Query: 58 ---LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L D + + + +++ +F GI + T + + L Sbjct: 414 ARLRPWLEDASRKKLGQHVKYDQHVFANH-GITVRGYA-HDTMLQSYVLEADRPHNLTSL 471 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL + C P+ + A+ D + T ++ Sbjct: 472 ALR------HVNRSGISYEDLCGKGKSQIPFAQVPVDKAAAYS------CEDSDQTLDVH 519 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P + + E I G ID + + + KL+E+ Sbjct: 520 NTLWPRIQVHAGLLHIYELEMQTSEALFRIERNGVSIDAGELARQSNDLGARILKLEEEA 579 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ S L F G+ +V + T + +LA+D L Sbjct: 580 YEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAEDYPLPAKLL 637 Query: 285 SGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L++ A+ SDGR+ + TGR S QN+P + Sbjct: 638 EHRSLSKLKGTYTDKLAQMALPSDGRVHTHYA-QAVAVTGRLSSNDPNLQNIPVRT---- 692 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR +A GK + AD + IE R++A ++G++ Sbjct: 693 --------------------PEGRRVREAFVAPEGKLIASADYSQIELRIMAHLSGDEAL 732 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF NG D++ T A+ F +D+VS EQR KV+ L Y AK Sbjct: 733 LSAFKNGLDVHRATAAEVFGVSVDEVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKA 792 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ Q + D +H + A Sbjct: 793 AAAYIDKYFQRYPGVKRYMDQTVELAHAQGYVETVFGRRLVLPEINGGNGPRKKAAERAA 852 Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543 + + GTA +L+KKA A ++Q+ +L ++ + Sbjct: 853 INAPMQGTAADLIKKAMVAVQARLDAEKPEVLVIMQVHDELVFELPEAARDWVQAEIPAI 912 >gi|325981763|ref|YP_004294165.1| DNA polymerase I [Nitrosomonas sp. AL212] gi|325531282|gb|ADZ26003.1| DNA polymerase I [Nitrosomonas sp. AL212] Length = 916 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 104/581 (17%), Positives = 195/581 (33%), Gaps = 111/581 (19%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID ET S P L + + A + + P +L L + Sbjct: 342 SIDSETTSLNPMQAKLVGISFCVESHHAAYLPLMHRYPGVPQQL----SFDRALKKLKPW 397 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFS 119 L T + N +++ +F DI T + + LAL Sbjct: 398 LESATKPKLGQNLKYDKHVFANH---DIQLNGIAHDTLLQSYVLESHRPHNMDSLALRHL 454 Query: 120 EHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + T GK + F + +ID+ +Y D + T L + Sbjct: 455 DVKTISYDDVTGKGVKRIGFDEVAIDTA----------------TQYAAEDADITFRLHQ 498 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P + E + + I G +D L+ K + ++ L++ Sbjct: 499 ALYPDIQSNAQLSHIYREIEMPILSVLFEIERNGVLLDYKLLQKQSHELGEKLHALEQQA 558 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ + ++ LF + +V + + S + QLA D L +L Sbjct: 559 YDISGQPF-NLNSPKQIQEILFHQLKLPIVKKTPTGVPST-DEDVLQQLALDYPLPKLLL 616 Query: 285 SGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ KL + L + + GR+ + TGR + QN+P + Sbjct: 617 NYRSLSKLKSTYTDKLPLMMDRNTGRVHTNYS-QAVAVTGRLASSDPNLQNIPVRT---- 671 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G +++ AD + IE R++A I+ ++ Sbjct: 672 --------------------SEGRRIREAFIAPAGYRIISADYSQIELRIMAHISQDEGL 711 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +KAFA GEDI+ T A+ P+++V +EQR KV+ L Y A S Sbjct: 712 LKAFAAGEDIHSATAAEILGIPLNQVDQEQRRHAKVINFGLIYGMSEFGLATQLGIERSA 771 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 ++++ ++ + ++ L + A Sbjct: 772 ARAYMERYFARYPKVESYMQQTREKARRLGYVETVLGRRLWLPEINNANGNRRQGAERAA 831 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + + GTA +++K A A H + ++Q+ +L Sbjct: 832 INAPMQGTAADIIKLAMIAVHSWLHKEKLHSKLIMQVHDEL 872 >gi|221236513|ref|YP_002518950.1| DNA polymerase I [Caulobacter crescentus NA1000] gi|220965686|gb|ACL97042.1| DNA polymerase I [Caulobacter crescentus NA1000] Length = 982 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 87/509 (17%), Positives = 159/509 (31%), Gaps = 87/509 (17%) Query: 48 TEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + +P + L L D V+ VA N+ ++ + + GI + Sbjct: 443 ADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVAPIEDTMLISYVLE 501 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 GL + L+ ++ +A KG I A Y Sbjct: 502 AGLHGHGMDELSELHLGHKPIPFKQ----VAGSGKGQISFKHVALPEATA---------Y 548 Query: 163 CKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D + T L+ L P ER + + + + G R+D + + L Sbjct: 549 AAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNE 608 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + + +L + + LF + + T + + Sbjct: 609 FSLRMAQFEARAQELVGRPF-NLGSPKQIGDVLFGEMQMKGGKKT-ATGQWSTDSDVLES 666 Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 LA + L R+ + KL L A++ GR+ + A+ TGR S Sbjct: 667 LALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYAL-AATTTGRLSSSDPN 725 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + +R +A+ G L+ AD + IE Sbjct: 726 LQNIPVRT------------------------EEGRKIRKAFVAAPGHVLISADYSQIEL 761 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R+LA I KAF G DI+ T ++ F+TPI+ + R K + + Y Sbjct: 762 RLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAF 821 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481 G A G ++ + + + D E+ Sbjct: 822 GLANQLGISQGEAGAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAK 881 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + A+ + G A +++++A Sbjct: 882 SAAHRQFAERAAINAPIQGAAADVMRRAM 910 >gi|197106849|ref|YP_002132226.1| DNA polymerase I [Phenylobacterium zucineum HLK1] gi|196480269|gb|ACG79797.1| DNA polymerase I [Phenylobacterium zucineum HLK1] Length = 944 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 87/513 (16%), Positives = 162/513 (31%), Gaps = 93/513 (18%) Query: 46 DRTEQ--SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 D T+ + L L D +V+ VA N+ ++ + + GI++ Sbjct: 405 DLTQIPLEQAIARLKPLLEDPSVLKVAQNAKYDIAVLSRY-GIEVGPIDDTMLISYVLEA 463 Query: 104 GLPSSLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 GL + + L + GKA F + Sbjct: 464 GLHNHGMDELSKLGLDHEPIAFKSVAGTGKAQ-KSFKYVGLSEATC-------------- 508 Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y D + T L++ L P ER + + + G ++D + + +L Sbjct: 509 --YAAEDADVTLRLWEHLKPRLAHEGLATVYETLERPMPKVLADMECAGAKVDAERLRQL 566 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 Q +L+ + +L + + LF G+ ++ T S Sbjct: 567 SNEFGQRMAELEAEAHRLAGRPF-NLGSPKQIGEVLFKEMGLASGRVT-ATGAFSTDASM 624 Query: 270 ITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 + LA L R+ + KL + L A+S GR+ + ++ TGR S Sbjct: 625 LEDLAAQGHELPRILLDWRQLSKLKGTYTDALVAAISEQTGRVHTSFSL-ASTTTGRLSS 683 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 N+P + +R +A GK L+ AD + Sbjct: 684 SDPNLMNIPIRT------------------------EEGRKIRRAFVAEPGKVLISADYS 719 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA I +AF G DI+ T ++ F P++ + E R K + + Y Sbjct: 720 QIELRLLAHIGDIPQLKRAFREGLDIHAMTASEMFGVPVEGMPSETRRRAKAINFGIIYG 779 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY--------- 489 G A G ++ + + + D + + Sbjct: 780 ISAFGLANQLGIPQDEAGAYIKTYFERFPGIRAYMDRTKQAARSQGFVHTIFGRKVNIPA 839 Query: 490 ------------PEFAVKDKLIGTACELVKKAW 510 A+ + G+A +++++A Sbjct: 840 VKSKSQAERAFGDRAAINAPIQGSAADVMRRAM 872 >gi|311693184|gb|ADP96057.1| LOW QUALITY PROTEIN: DNA polymerase I [marine bacterium HP15] Length = 868 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 99/617 (16%), Positives = 197/617 (31%), Gaps = 116/617 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSD 56 D ET S Y + A I ++A + Sbjct: 295 DTETTSL---------RYMD-AEIVGVSFAVKPGEAAYVPLGHDYMGAPEQLDRDQVLDQ 344 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L + + V N +++ + GI + T + + + + LA Sbjct: 345 LKPLLENPDLAKVGQNLKYDKNVLANH-GITLEGIA-EDTMLESYVLNSVATRHDMDSLA 402 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + + T E GK F + ++ Y D + T Sbjct: 403 MYYLGEKTTSFESIAGKGAKQLTFNQIDLEKAA----------------PYAAEDADITL 446 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L P D + L + + RG I + + + +A+ +L Sbjct: 447 RLHQTLRPKLKETGKLAAVYEDIDLPLVPVLSRMEQRGTLISASTLRQHSQELAERMAEL 506 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS---HSNITQLAKDL 277 +++ ++ + T L+ + G+ ++ + + S ++ T + Sbjct: 507 EKEAHEVAGETF-NLGSTKQLQAIFYDKMGLPVIKKPQRARRQQRSRCFRNSPTNTNCRV 565 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 IL + S +TL E + GR+ + + TGR S QN+P + Sbjct: 566 ILEHRSLSKLKSTYTDTLPELIHHRTGRVHTSY-HQAVTATGRLSSSEPNLQNIPIRS-- 622 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G KLV AD + IE R++A ++G+ Sbjct: 623 ----------------------EQGRRIRQAFIAPEGYKLVAADYSQIELRIMAHLSGDK 660 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452 +KAF GEDI+ T ++ F +D VS +QR K + L Y A + Sbjct: 661 GLLKAFEKGEDIHKATASEVFGVSLDDVSSDQRRSAKAINFGLIYGMSAFGLSRQLDVER 720 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 + ++ + + D + + + +Q Sbjct: 721 KLAQEYIDRYFERYPGVLKYMDNIRKQAHDDGFVETLFGRRLYLPEINARNKQLQQAAER 780 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A+ + GTA +++K+A + + L + A + + + V + Sbjct: 781 TAINAPMQGTAADIIKRAM-------VDVENWLLKEHADEARMTMQVHDELILEVKESAL 833 Query: 552 RRHKRDVHIVLPSSRRL 568 + + + + ++ L Sbjct: 834 DKIRSGLEKRMSAAAEL 850 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%) Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 D+ A + V + ++ D + RRL ++ L Sbjct: 717 DVERKLAQEYIDRYFERYPGVLKYMDNIRKQAHDDGFVETLFGRRLYLPEINARNKQLQQ 776 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSE 635 A R +Q + DI+ M + + + + VHDE++ E Sbjct: 777 AA---ERTAINAP------MQGTAADIIKRAMVDVENWLLKEHADEARMTMQVHDELILE 827 Query: 636 TPDTPYFSV-GTLCSLMTKN 654 ++ + L M+ Sbjct: 828 VKESALDKIRSGLEKRMSAA 847 >gi|311744979|ref|ZP_07718764.1| DNA polymerase I [Algoriphagus sp. PR1] gi|126577486|gb|EAZ81706.1| DNA polymerase I [Algoriphagus sp. PR1] Length = 941 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 101/580 (17%), Positives = 200/580 (34%), Gaps = 109/580 (18%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58 +L D ET S A +A + ++A+ DR E + L Sbjct: 369 QLCFDTETTSVN----------AMEAELVGISFAYLSGEAYYIPCPADRAETDQILEQLK 418 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--KNACLAL 116 ++E ++ + N ++ ++ K D+ K + ++LA P + Sbjct: 419 PVFQNEKILKIGQNIKYDLLILKNY---DVEVKGKLYDTMLAHYLIEPEGKHSMDWLAEQ 475 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + E LI + K + D + EY D + T +L ++ Sbjct: 476 YLNYQPVSITE---LIGKKGKNQGNMRDVDVDQVT---------EYASEDADITLQLKEK 523 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + G RID + ++ + +E K+++ + + Sbjct: 524 LDPFLKENLLEKLFYEVENPLINVLTEMEFEGIRIDTKSLAEMSISLEKESKEIENKVYE 583 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + L LF +D T + +++LA + + R Sbjct: 584 IAGVRFNLA-SPKQLGDVLFEKLKLDPKAKKTKTGQYATGEEILSKLANEHEIARAILDF 642 Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++KL + L ++ G++ T + A+ TGR S QN+P + Sbjct: 643 RQMVKLKSTYVDALPTMINSKTGKIHTTYNQFVAA-TGRLSSINPNLQNIPIRTER---- 697 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + L+ AD + IE R++A +G++ I Sbjct: 698 --------------------GREIRKAFVPRDENHILLAADYSQIELRIMAAFSGDESMI 737 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF NG DI+ TT AK F P+++V+ + R K + Y G ++ + Sbjct: 738 EAFKNGRDIHATTAAKIFQVPLEEVTSDMRRKAKTANFGIIYGISAFGLSQRLSISRTEA 797 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + + D S + M+ A+ Sbjct: 798 KEIIDAYFKEFPAVKEYMDRAIEKARNDEYVETLLGRRRYLRDINSRNATMRGFAERNAI 857 Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + G+A +L+K A H + +LQ+ +L Sbjct: 858 NAPIQGSAADLIKVAMIDVHNWMKKENLKSKMILQVHDEL 897 >gi|254417961|ref|ZP_05031685.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] gi|196184138|gb|EDX79114.1| DNA polymerase I superfamily [Brevundimonas sp. BAL3] Length = 971 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 92/559 (16%), Positives = 173/559 (30%), Gaps = 95/559 (16%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 EP++ D ++ + L L + +V+ V N+ ++ + + GI + Sbjct: 432 EPIQQLD---KAKALAKLKVLLENPSVLKVLQNAKYDLAVMAR-RGIRVAPYDDTMLISY 487 Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 GL + L+ + S S + + Sbjct: 488 VLEGGLHGHGMDELARLHLGHDPVPFKSVAGTGK-----SQKSFRHVALKP--------A 534 Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 +Y D + T L++ L P ER L + + G RID D + +L Sbjct: 535 TQYAAEDADVTLRLWRLLKPRLAREGLSTVYETLERPLPAVLAEMETAGVRIDPDRLKRL 594 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 +L+ ++ + + LF + + + S Sbjct: 595 SSEFGLRMAELEAQAHEIAGRPF-NIGSPRQIGEILFGELNLPGGKKTASG-QWGTDASV 652 Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + LA L R+ + KL + L+ A R+ + Q A+ TGR + Sbjct: 653 LEDLAATHALPRVLLDWRQLSKLKGTYTDALTAAADPATDRVHTSYQL-AAATTGRLASS 711 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + + +R IA+ G L+ AD + Sbjct: 712 DPNLQNIPIRTET------------------------GREIRQAFIAAPGHLLISADYSQ 747 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE R+LA I +AF G DI+ T ++ F P++ + E R K + + Y Sbjct: 748 IELRLLAHIGDIPELKRAFKAGLDIHAATASEMFGVPVEGMPSETRRRAKAINFGIVYGI 807 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------- 485 G A G ++ + T+ D +AE Sbjct: 808 SAFGLAAQLGIDQGEAGAYIKTYFDRFPGIRTYMDKTRAEVRQAGFVSTVFGRRIHIPAI 867 Query: 486 -------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGF 528 + A+ + G A +++++A + +LQ+ +L Sbjct: 868 HSKSGAERQFGERAAINAPIQGAAADIIRRAMIRMPTALAEAGLTTRMLLQVHDELVFET 927 Query: 529 ACVVQEGGSISARRVANVP 547 + +RV Sbjct: 928 PEAEADRAITVIKRVMETA 946 >gi|169634321|ref|YP_001708057.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii SDF] gi|169153113|emb|CAP02187.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii] Length = 923 Score = 271 bits (694), Expect = 2e-70, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 202/584 (34%), Gaps = 94/584 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + LF GI + T + S S + ++ L L Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844 Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 L G+A +++K A + + +L + + V + Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888 >gi|309378893|emb|CBX22480.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 939 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 108/570 (18%), Positives = 197/570 (34%), Gaps = 89/570 (15%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 K+ ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 EKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QYVLDRL 408 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110 +L + + + N +++ +F I + ++LA +GL L Sbjct: 409 KPHLENPALKKIGQNLKYDQHVFANY---GIALNGIVGDAMLASYIIESHLGHGLD-ELS 464 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + + +G I + Y A+ + + D + Sbjct: 465 GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHL-RAQMD-DKQ 522 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 LEMYEKM------ELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQ 576 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GI + + I + + QLA D L ++ ++ Sbjct: 577 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSL 635 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E +S D R+ T + TGR +G QN+P + Sbjct: 636 AKLKSTYTDKLPEMISPRDKRVHTTYA-QAVAITGRLAGNNPNLQNIPIRT--------- 685 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 686 ---------------EEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 730 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 731 NGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 790 Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498 ++ + + + + + ++ + A+ + Sbjct: 791 DRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNANIRARAERAAINAPM 850 Query: 499 IGTACELVKKAW----RAKHQGVLQLWKDL 524 GTA +L+K+A R + W DL Sbjct: 851 QGTASDLIKRAMIDVSRWLSECEASPWDDL 880 >gi|241667791|ref|ZP_04755369.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876335|ref|ZP_05249045.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842356|gb|EET20770.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 896 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 97/509 (19%), Positives = 172/509 (33%), Gaps = 72/509 (14%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L D VAHN F+ + K G+ I + T ++A Sbjct: 368 EIVLDSLKPVFVDSQKSKVAHNFKFDEKILSKY-GVKI-VNQVNDTMIMAYVLKSSGKHD 425 Query: 111 NACLA---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCK 164 L+ L + T G+ + Y A+ + + F + K Sbjct: 426 MDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNHFLKMLK 485 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D E L+ S+ E L ++ + G +ID +++ + K+L+ Sbjct: 486 DD-EVLYSLY------SNVEMPLTIILNNMEKVGVKIDAAKLIEQSANLEDSIKELEIKC 538 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L S LR LF G+ V + ++ S + QLA++ + L Sbjct: 539 YDLAGQEFNLS-SPVQLREILFDKMGLPPVKKTAKG-QASTSEEVLVQLAEEYEIAALIM 596 Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + + +GR+ + G + TGR S QN+P + Sbjct: 597 KYRHLSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS----- 650 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA +V AD + IE R++A ++ + + Sbjct: 651 -------------------PEGRKIRQAFIAEQEFCVVAADYSQIELRIMAHLSKDKNLL 691 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 KAF G DI+ T A+ +D V+ EQR K + L Y AK + Sbjct: 692 KAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEA 751 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + S + S ++ ++ A+ Sbjct: 752 QEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAI 811 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + GTA +++KKA + +LQ + D Sbjct: 812 NAPMQGTAADIIKKAMIDVNTMILQEYND 840 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 10/125 (8%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 A+ +V K + +++ Y + + G YL +S+ + +R + Sbjct: 750 EAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERA 809 Query: 598 TENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLC 648 N +Q + DI+ + M + + +V+ VHDE+V E + + Sbjct: 810 AINAPMQGTAADIIKKAMIDVNTMILQEYNDDIKMVMQVHDELVFEVRKAKLNEITTKIK 869 Query: 649 SLMTK 653 S+M Sbjct: 870 SIMET 874 >gi|218767443|ref|YP_002341955.1| DNA polymerase I [Neisseria meningitidis Z2491] gi|121051451|emb|CAM07744.1| DNA polymerase I [Neisseria meningitidis Z2491] Length = 938 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 103/551 (18%), Positives = 190/551 (34%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 851 GTASDLIKRAM 861 >gi|288941214|ref|YP_003443454.1| DNA polymerase I [Allochromatium vinosum DSM 180] gi|288896586|gb|ADC62422.1| DNA polymerase I [Allochromatium vinosum DSM 180] Length = 911 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 101/568 (17%), Positives = 185/568 (32%), Gaps = 104/568 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + P +L ++ + + L L D V N ++ + + D Sbjct: 363 AAYVPLAHVYPGAPDQL----DRDRVLARLKPLLEDPGRPKVGQNLKYDMSVLARY---D 415 Query: 88 IPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSIDS 142 I + T + + + LA F +H T + GK F + + Sbjct: 416 IALRGIAHDTLLESYVLDSTARHDLDSLAKRFLDHDTIRFEDVAGKGAKQIGFDQVPL-- 473 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 + G Y D E T L + P + E L + Sbjct: 474 --------------EQAGPYAAEDAEVTLRLHRVFQPRLAAVPALERLYREIEMPLVPVL 519 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ID + +A++ +L+E ++ + + F G+ Sbjct: 520 SRLERAGVLIDSARLATQSAELARKILELEESAYRVAGRRF-NLGSPKQIGAIFFDELGL 578 Query: 252 DLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSD-GR 304 +V + S S + +LA + L R+ + KL + L V D GR Sbjct: 579 PVVAKTPKGAPST-SEDVLERLAAEGHELPRIILDHRGLSKLRSTYTDKLPRMVDRDTGR 637 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 638 VHTSY-HQAVTATGRLSSSDPNLQNIPIRT------------------------EEGRRI 672 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R IA++G +L+ AD + IE R++A ++G++ + AFA G+DI+ T A+ + V Sbjct: 673 RRAFIAASGHRLLAADYSQIELRIMAHLSGDERLLAAFAGGQDIHRATAAEILGLAPEDV 732 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + EQR K + L Y A+ + ++ + F D + + Sbjct: 733 TGEQRRSAKAINFGLIYGMSAFGLARQLGIERGAAQEYVDRYFERYPGVRDFMDRTRRQV 792 Query: 481 HH-------LWMQDQYPEFA--------------VKDKLIGTACELVKK------AWRAK 513 + PE + + GTA +++K+ AW Sbjct: 793 REDGYVETLFGRRLHLPEIGHGNQARRAAAERTAINAPMQGTAADIIKRAMIAVDAWIEA 852 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISAR 541 Q +L + + V E R Sbjct: 853 EQPAARLILQVHDELVLEVAESAVEETR 880 >gi|254515980|ref|ZP_05128040.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] gi|219675702|gb|EED32068.1| DNA polymerase I superfamily protein [gamma proteobacterium NOR5-3] Length = 907 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 102/582 (17%), Positives = 188/582 (32%), Gaps = 116/582 (19%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S + VG+ E+ A+++ P +L ++ A+ + L Sbjct: 334 DTETTSLNYMEAEI--VGLSFAVERGEAAYVPLAHSYPGTPAQL----DRDAVLAALKPL 387 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPS-SLKNACLALNF 118 L D + N ++ + + DI + T + + LAL + Sbjct: 388 LEDPDKAKLGQNLKYDASVLARY---DIAMQGIAFDTMLESYVLDSTGTRHDMDSLALKY 444 Query: 119 ---SEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 S + GK F K I+ T L Sbjct: 445 LGRSTTHFEDVAGKGAKQITFDKVGIEEAAAYAAEDAE----------------VTLALH 488 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P L+D E L + + G +D + + + + Q + L+E+ Sbjct: 489 ETLWPKLQETPSLASVLTDIELPLVPVLSRMERCGALLDEERLWEHSRELGQRLQALEEE 548 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + + L LF + ++ + S + +LA D L +L Sbjct: 549 AHNVAGQVF-NLGSPKQLGQILFEKLELPVLKKTPKGAPSTAEE-VLQELALDYPLPKLL 606 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L ++S GR+ + + TGR S QN+P + Sbjct: 607 IEHRGLSKLKSTYTDKLPGMINSHTGRIHTSY-HQAVTATGRLSSSDPNLQNIPIRT--- 662 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA+ G ++V AD + IE R++A ++ + Sbjct: 663 ---------------------EEGRRIRQAFIAAEGYQIVAADYSQIELRIMAHLSEDPG 701 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AF D++ T A+ F P+D VS EQR K + L Y A+ Sbjct: 702 LLAAFRENLDVHSATAAEVFGVPLDSVSGEQRRKAKAINFGLIYGMSAFGLARQLHLDRG 761 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPEF 492 + + + + +A +H Q Sbjct: 762 EAQRYIDVYFERYPGVRQYMVRTRALAHEQGYVETLFGRRLYLPEINVRNKMRQQAAERT 821 Query: 493 AVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 A+ + GTA +++K A A + ++Q+ +L Sbjct: 822 AINAPMQGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDEL 863 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 7/70 (10%) Query: 603 QAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655 Q + DI+ M +++ VHDE+V E ++ V LC LM+ Sbjct: 828 QGTAADIIKMAMLAVDGWIADDGVDAKMIMQVHDELVLEVAESQLDPVCDELCRLMSAAA 887 Query: 656 SWAKGLPLKA 665 A L ++A Sbjct: 888 DLAVPLLVEA 897 >gi|118595288|ref|ZP_01552635.1| DNA polymerase I [Methylophilales bacterium HTCC2181] gi|118441066|gb|EAV47693.1| DNA polymerase I [Methylophilales bacterium HTCC2181] Length = 904 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 117/617 (18%), Positives = 208/617 (33%), Gaps = 117/617 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV---------KLWDRTEQSA 52 ID ET S + AE I+LC + D+ +A Sbjct: 327 KFFSIDTETNSLNTMK-------AELVGISLC---INPGRACYIPLCHKNSSVDQLSLAA 376 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + DL L D ++ + N ++ +F GI+I T +++ + Sbjct: 377 VLEDLKPILEDSSIKKLGQNLKYDAHIFLNY-GIEINGISD-DTMLMSYVIESNQNHGMD 434 Query: 113 CLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L+ + H K E GK + F + S++ Y D + Sbjct: 435 KLSAKYLGHNCKSYESLVGKGVNQLTFDQVSVEDA----------------VPYAAEDAD 478 Query: 169 ATRELF-----------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T +L+ L D E I G ID ++ ++I ++ Sbjct: 479 VTLQLYLAMKETLDSNPSLLRVYKDIEIPAMKALIHIERNGVLIDPKILGDQSKVIGEKL 538 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 L+E L S L+ LF I + + S S +++LA + Sbjct: 539 LLLEEKAFDLAGQPFNLS-SPKQLQEILFEKLEIKPLKKTPSGTPST-SEEVLSELALNY 596 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L +L ++ KL + L + ++ GR+ + + TGR + QN+P Sbjct: 597 PLPKLILEYRSLAKLKSTYTDKLPKMINESSGRVHTSYN-QAIAITGRLASSDPNLQNIP 655 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + + VR IA +G K++ AD + IE R++A Sbjct: 656 IRT------------------------VEGRKVREAFIAPDGSKILSADYSQIELRIMAH 691 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 ++ + + AF N EDI+ T + FN VS EQR KV+ L Y G AK Sbjct: 692 LSKDKRLVAAFKNNEDIHTITAGEIFNIDNSAVSSEQRRYAKVINFGLIYGMGVYGLAKN 751 Query: 448 FKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQY----------------- 489 + ++++ S ED +Q + +++ + Sbjct: 752 LNIERAAAQNYIERYFSKYPSVREYMEDTKQDARKNGYVETHFGRRLWVPEINGSNGMQR 811 Query: 490 ---PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 A+ + GTA +L+K A ++ W D + + V V Sbjct: 812 AGAERAAINGPMQGTAADLIKMAMVG-----VKTWLDGQRHLK--GKMIMQVHDELVFEV 864 Query: 547 PRLVMRRHKRDVHIVLP 563 P + K ++ ++ Sbjct: 865 PDTEVTEFKENIKRIME 881 Score = 45.1 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 19/137 (13%) Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + A E V + +++ ++ RRL ++ G Sbjct: 754 IERAAAQNYIERYFSKYPSVREYMEDTKQDARKNGYVETHFGRRLWVPEINGSN---GMQ 810 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA--------TKNGYDIVLTVHDEIVSE 635 + R G +Q + D++ M G +++ VHDE+V E Sbjct: 811 RAGAERAAINGP------MQGTAADLIKMAMVGVKTWLDGQRHLKG-KMIMQVHDELVFE 863 Query: 636 TPDTPYFSVGT-LCSLM 651 PDT + +M Sbjct: 864 VPDTEVTEFKENIKRIM 880 >gi|239500679|ref|ZP_04659989.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB900] Length = 923 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 202/584 (34%), Gaps = 94/584 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + LF GI + T + S S + ++ L L Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844 Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 L G+A +++K A + + +L + + V + Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888 >gi|317121267|ref|YP_004101270.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] gi|315591247|gb|ADU50543.1| DNA polymerase I [Thermaerobacter marianensis DSM 12885] Length = 1060 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 82/416 (19%), Positives = 153/416 (36%), Gaps = 68/416 (16%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 VEA + E L + + + G +D + +L L + ++L E I + Sbjct: 641 VEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQELAEQIYQ 700 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + T L LF G+ +V ++ + LA + L Sbjct: 701 LAGETF-NINSTQQLGQILFERLGLPVVKKTK--TGYSTDAEVLETLAARHPIAELVLEY 757 Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 +++KL + L+E + DGR+ T Q A+ TGR S QN+P ++ Sbjct: 758 RSLVKLQGTYVDGLAEHIGPDGRVHTTFQQTVAA-TGRLSSTQPNLQNIPIRDEP----- 811 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G +LV AD + IE RVLA +G++ ++A Sbjct: 812 -------------------GRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDEGLLEA 852 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 FA G+D++ T ++ F P+++V+ EQR + K + L Y G A+ + + Sbjct: 853 FARGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDYGLARALRIDRADARR 912 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKD 496 + ++ + + + + ++ A+ Sbjct: 913 FMDRYFERYPGVKRYMEETIRRARQHGEVTTLLGRRRPVPEIRHRVYHIRQNAERVAINT 972 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 + GTA +++K A ++ VLQ+ +L + RR Sbjct: 973 PIQGTAADIMKLAMIRVYRALAGEGLRARIVLQVHDELLVEAPEDEVPAVAALLRR 1028 >gi|226941896|ref|YP_002796970.1| PolA [Laribacter hongkongensis HLHK9] gi|226716823|gb|ACO75961.1| PolA [Laribacter hongkongensis HLHK9] Length = 932 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 100/594 (16%), Positives = 185/594 (31%), Gaps = 119/594 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----------MPSD 56 D ET S P+ QA I ++A + + + Sbjct: 360 DTETDSLDPM----------QARIVGVSFAVTPGEAAYVPLAHVAPGVEPQLDRDRVLAQ 409 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA- 115 L +L + V N+ ++R + GI + T ++ +A Sbjct: 410 LKPWLENPAAAKVLQNANYDRHVLANH-GIRLAGVAD-DTMLMDYVLASHERHNMDAMAE 467 Query: 116 --LNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L + + GK F + +D+ Y D + T Sbjct: 468 RELGLATIKYEDICGKGARQIGFAEVDLDTATR----------------YAAEDADVTLR 511 Query: 173 LFKRL---------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L L S E + + G ID + + +++ +E ++ + Sbjct: 512 LRDVLAGKLDGARDTLYSSIELPTAAVLFAMERTGVLIDRAELARQSQVLGEEMLAIETE 571 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRL 282 + +L + L LF ID + + + S + +LA+D L + Sbjct: 572 VYELAGQPF-NLNSPKQLSDILFNKLAIDTKGVKKTASGGYSTDESVLEKLAEDYPLPKA 630 Query: 283 ASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L ++ D GR+ TGR + QN+P + Sbjct: 631 LLRYRGLAKLKSTYTDKLPAMINPDTGRVHTHYSQASVV-TGRLASSDPNLQNIPIRT-- 687 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 VR +A G +V AD + IE R++A ++G+ Sbjct: 688 ----------------------DEGRRVREAFVAPAGSCIVSADYSQIELRIMAHLSGDA 725 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 I AF G DI+ T ++ F P++ VS EQR K + L Y AK + Sbjct: 726 GLIAAFREGRDIHRATASEVFGVPLEAVSAEQRRYAKTINFGLIYGMSAFGLAKSLEIDN 785 Query: 453 SHCGLDLQQFSQNVKSTS-TFEDWEQAESHHLWMQDQYPE-------------------- 491 ++++ + +A W++ + Sbjct: 786 KAAQTFIERYFARYPGVQDYMQRTREAAREQGWVETVFGRRLYLPEIRSSNAARRAGAER 845 Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 A+ + GTA +L+K A + ++Q+ +L +E Sbjct: 846 AAINAPMQGTAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERER 899 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 13/73 (17%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNP 655 Q + D++ M + +++ VHDE+V E P+ V L M Sbjct: 853 QGTAADLIKLAMIRVADWLQREQLASRLIMQVHDELVLEVPEAERERVCAALPQEMAAV- 911 Query: 656 SWAKGL--PLKAE 666 GL PL AE Sbjct: 912 ---AGLAVPLVAE 921 >gi|184156936|ref|YP_001845275.1| DNA polymerase I [Acinetobacter baumannii ACICU] gi|294840299|ref|ZP_06784982.1| DNA polymerase I [Acinetobacter sp. 6014059] gi|183208530|gb|ACC55928.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Acinetobacter baumannii ACICU] gi|322506832|gb|ADX02286.1| DNA polymerase I [Acinetobacter baumannii 1656-2] gi|323516701|gb|ADX91082.1| DNA polymerase I [Acinetobacter baumannii TCDC-AB0715] Length = 923 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 202/584 (34%), Gaps = 94/584 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QVLAQIKPILENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + LF GI + T + S S + ++ L L Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844 Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 L G+A +++K A + + +L + + V + Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888 >gi|16127694|ref|NP_422258.1| DNA polymerase I [Caulobacter crescentus CB15] gi|13425184|gb|AAK25426.1| DNA polymerase I [Caulobacter crescentus CB15] Length = 967 Score = 271 bits (693), Expect = 3e-70, Method: Composition-based stats. Identities = 87/509 (17%), Positives = 159/509 (31%), Gaps = 87/509 (17%) Query: 48 TEQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + +P + L L D V+ VA N+ ++ + + GI + Sbjct: 428 ADIEQIPLADVIATLKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVAPIEDTMLISYVLE 486 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 GL + L+ ++ +A KG I A Y Sbjct: 487 AGLHGHGMDELSELHLGHKPIPFKQ----VAGSGKGQISFKHVALPEATA---------Y 533 Query: 163 CKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D + T L+ L P ER + + + + G R+D + + L Sbjct: 534 AAEDADVTLRLYHHLKPQLARASLSTVYETLERPMPAVLAMMENNGVRVDPEALRLLSNE 593 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + + +L + + LF + + T + + Sbjct: 594 FSLRMAQFEARAQELVGRPF-NLGSPKQIGDVLFGEMQMKGGKKT-ATGQWSTDSDVLES 651 Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 LA + L R+ + KL L A++ GR+ + A+ TGR S Sbjct: 652 LALEHELPRVLLDWRQLSKLKGTYTENLIAAIAPSTGRVHTSYAL-AATTTGRLSSSDPN 710 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + +R +A+ G L+ AD + IE Sbjct: 711 LQNIPVRT------------------------EEGRKIRKAFVAAPGHVLISADYSQIEL 746 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R+LA I KAF G DI+ T ++ F+TPI+ + R K + + Y Sbjct: 747 RLLAHIGDIPQLKKAFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAF 806 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481 G A G ++ + + + D E+ Sbjct: 807 GLANQLGISQGEAGAYIKTYFERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPDIEAK 866 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + A+ + G A +++++A Sbjct: 867 SAAHRQFAERAAINAPIQGAAADVMRRAM 895 >gi|121608805|ref|YP_996612.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] gi|121553445|gb|ABM57594.1| DNA polymerase I [Verminephrobacter eiseniae EF01-2] Length = 936 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 105/577 (18%), Positives = 189/577 (32%), Gaps = 104/577 (18%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S + VG+ + A ++ D P +L + + L + Sbjct: 363 ALDTETDSLDEMRAQIVGISLSVQPGAAAYIPLQHSGPDAPAQLPI----GQVLARLKPW 418 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D + + ++R +F GI++ T + + + LA Sbjct: 419 LEDGRRHKLGQHIKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHNLGSLAER--- 473 Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 G+ I+ C P+ + A+ D + T + + L Sbjct: 474 -----HTGRKGISYEDLCGKGAHQLPFAQVPVDKAAAYS------CEDADLTLNVHQTLW 522 Query: 179 PLS---DGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P D R ++ L+ I G ID + + + Q ++L D L Sbjct: 523 PQLQAHDRLRFIYELEIASSEALYRIERNGVLIDAPTLAQQSHELGQRIEQLQADAYALA 582 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 S L F G+ +V + T + +LA++ L Sbjct: 583 GQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGARSTDEEVLEKLAENYPLPAKLLEHRG 640 Query: 289 ILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++KL + L++ A+ GR+ + TGR S QN+P + Sbjct: 641 LIKLKGTYTDKLTQLALPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT-------- 691 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR +A G + AD + IE R++A ++ + + AF Sbjct: 692 ----------------PEGRRVREAFVAPAGCVIASADYSQIELRIMAHLSDDQALLHAF 735 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 G D++ T A+ F +D+VS EQR KV+ L Y G AK Sbjct: 736 HAGLDVHRATAAEVFGVALDQVSSEQRRYAKVINFGLIYGMGSFGLAKNLGLENKAAAAY 795 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 + ++ Q + D +A + + A+ Sbjct: 796 IDRYFQRYPGVKQYMDQTRAAAKSNGYVETVFGRRLYLPEINSPNGPRRSGAERSAINAP 855 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA +L+K A A + ++Q+ +L Sbjct: 856 MQGTAADLIKMAMVAVQKELDAQQPAIRMIMQVHDEL 892 >gi|193076392|gb|ABO11061.2| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 923 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 201/584 (34%), Gaps = 94/584 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L + Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQL----NRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + LF GI + T + S S + ++ L L Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844 Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 L G+A +++K A + + +L + + V + Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888 >gi|169797137|ref|YP_001714930.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|215484600|ref|YP_002326835.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] gi|294839290|ref|ZP_06783973.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013113] gi|294858990|ref|ZP_06796759.1| DNA polymerase I(POL I) [Acinetobacter sp. 6013150] gi|301510197|ref|ZP_07235434.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB058] gi|169150064|emb|CAM87958.1| DNA polymerase I, 3'--> 5' polymerase, 5'--> 3' and 3'--> 5' exonuclease [Acinetobacter baumannii AYE] gi|213987981|gb|ACJ58280.1| DNA polymerase I(POL I) [Acinetobacter baumannii AB307-0294] Length = 923 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 202/584 (34%), Gaps = 94/584 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + LF GI + T + S S + ++ L L Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844 Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 L G+A +++K A + + +L + + V + Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888 >gi|260556039|ref|ZP_05828258.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] gi|260410094|gb|EEX03393.1| DNA polymerase I [Acinetobacter baumannii ATCC 19606] Length = 923 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 201/584 (34%), Gaps = 94/584 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L + Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQL----NRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + LF GI + T + S S + ++ L L Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844 Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 L G+A +++K A + + +L + + V + Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888 >gi|319788387|ref|YP_004147862.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] gi|317466899|gb|ADV28631.1| DNA polymerase I [Pseudoxanthomonas suwonensis 11-1] Length = 927 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 95/582 (16%), Positives = 184/582 (31%), Gaps = 96/582 (16%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S P+ VG+ AE +A + + P +L L Sbjct: 352 ALDTETDSLDPMRARLVGLSFAAEPGRAAYLPLGHDYPGAPAQLG----YEQALDLLRPL 407 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D V + + ++ + ++ +G ++ + Sbjct: 408 LADPAVRKIGQHGKYDLHVLRRHGVAVAGYADDTLLESFVLDSGNARHDMDSLALRHLGY 467 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K E+ C + P+ + + D + T L + L Sbjct: 468 TTVKYEDI-------CGKGVRQIPFSQCALDDATRY------AAEDADITLRLHRVLSAR 514 Query: 181 S-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 D E L + + I G +D+D + + +++ + E L Sbjct: 515 LQAEPQLQAVYRDIEMPLVQVLERIEANGVLVDMDELRRQGADLSRRMLEAQERATALAG 574 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + + + S + + +A L R+ + Sbjct: 575 RSF-NLDSPKQLCALLFDELKLPALVKTPKGQPSTNEEA-LEAIADLHELPRIILEYRGL 632 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E V+ GR+ + GA+ TGR S QN+P + Sbjct: 633 AKLRSTYTDKLPEMVNPETGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTDD------- 684 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G+KLV D + IE R++A ++ + + AFA Sbjct: 685 -----------------GRRIRRAFVAPPGRKLVACDYSQIELRIMAHLSQDPGLLGAFA 727 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 +G DI+ T A+ F P+++V+ +R K + L Y G A+ + Sbjct: 728 SGADIHRATAAEVFGRPLEEVTVNERRAAKAINFGLMYGMGAFGLARQLGIDRGQAQDYI 787 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498 + + + + ++ + A+ + Sbjct: 788 ALYFSRYPGVRDYMERTREQARERGYVETVFGRRLHLEYINARNAAQRAGAERAAINAPM 847 Query: 499 IGTACELVKK------AWRAKHQGVLQLWKDLTEGFACVVQE 534 GTA +++K+ AW A H ++ + + E Sbjct: 848 QGTAADIIKRAMIAVDAWIADHAQRARMLLQVHDELVFEADE 889 >gi|145589891|ref|YP_001156488.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048297|gb|ABP34924.1| DNA polymerase I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 943 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 105/581 (18%), Positives = 192/581 (33%), Gaps = 101/581 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 +D ET S L VG+ + A + +L + + + +L Sbjct: 371 AVDTETTSLDALAAELVGISLSVKPGEACYIPVAHRNGEAQL----SRELVLKRMKSWLE 426 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG---LPSSLKNACLALNFS 119 + + V N ++ +F DI + ++L LP ++ + + Sbjct: 427 SSSHLKVGQNLKYDIHIFANY---DIHLEGIAFDTLLESYVLESHLPHNMDSLAE-RHLG 482 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + EE C + +D Q+ Y D + T L L P Sbjct: 483 LKTIRYEEV-------CGKGVHQIGFD------QVDLQIATNYAAEDADITLRLHLELWP 529 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E L+ + G RID L+ K + + + +L+ +I +L Sbjct: 530 QIQASPGLLYVYEKIEMPAMLVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEIHRLA 589 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + + LF + +V + S + +LA+D L + Sbjct: 590 GQPF-NIQSPKQIAEILFGQLELPIVKKTPSGAPST-DEEVLQKLAEDYPLPARILDYRS 647 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL L GR+ A TGR + QN+P + Sbjct: 648 LAKLMSTYIEKLPRMADPKTGRIHTNFSQATAV-TGRLASSDPNLQNIPVRT-------- 698 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I ++G KL+ AD + IE R++A IA ++ + AF Sbjct: 699 ----------------EEGRRIREAFIPADGCKLLSADYSQIELRIMAHIAEDENLLTAF 742 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 G+D++ T A+ F P+D V+ EQR KV+ L Y A + Sbjct: 743 KEGKDVHQATAAEIFGIPLDDVNSEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQNY 802 Query: 459 LQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDK 497 + ++ + + + + E+ LW+ + A+ Sbjct: 803 IAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWLPEIKGSNGPRRQGAERAAINAP 862 Query: 498 LIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVV 532 + GTA +L+K A W K Q ++ + + V Sbjct: 863 MQGTAADLIKLAMIAVEDWLEKEQLKTKMLLQVHDELVFDV 903 >gi|121635640|ref|YP_975885.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|120867346|emb|CAM11117.1| DNA polymerase I [Neisseria meningitidis FAM18] gi|325137472|gb|EGC60058.1| DNA polymerase I [Neisseria meningitidis ES14902] Length = 930 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 109/594 (18%), Positives = 202/594 (34%), Gaps = 94/594 (15%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + + ID ET S L + + A +AV ++ P +L D + L Sbjct: 352 NTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRL 407 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110 +L + + + N +++ +F I ++LA +GL L Sbjct: 408 KPHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELS 463 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + + +G I + Y A+ + + D E Sbjct: 464 ERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQ 521 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E+++++ E + + + G +ID + + + E KL++ D Sbjct: 522 LEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQ 575 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 576 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSL 634 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 635 AKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT--------- 684 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 685 ---------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 729 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 730 NGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 789 Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498 ++ + + + ++ + + A+ + Sbjct: 790 DRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPM 849 Query: 499 IGTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 850 QGTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903 >gi|330997297|ref|ZP_08321150.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] gi|329571092|gb|EGG52799.1| DNA-directed DNA polymerase [Paraprevotella xylaniphila YIT 11841] Length = 923 Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats. Identities = 93/590 (15%), Positives = 186/590 (31%), Gaps = 110/590 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59 L +D ET P+ A + +++ + + + ++ Sbjct: 353 LSLDTETTGTDPI----------SAKLVGLSFSVKENQAFYVPIPQDPEEAQKIVNEFKS 402 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116 DE ++ + N ++ ++ + GI + + I +++A P + Sbjct: 403 VYEDERILKIGQNIKYDLMVLQNY-GITLKGE--IFDTMIAHYLLQPELRHGMDYLAEV- 458 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + +EE + K D PP EY D + T +L Sbjct: 459 YLNYQTIHIEELIGPKGKNQKNMADLPPSQV------------YEYACEDADITLKLKNV 506 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P + E L + + G ID + + + L +E L+E+I Sbjct: 507 FEPKLKEEGCYDLFREVEMPLMPVLAWMERNGVCIDTEALKETSTLYTKEMNCLEEEIHA 566 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + + LF I T + + S + L + Sbjct: 567 LAGEPFNIA-SPKQVGEVLFEKLKISEKPKKTKTGQYVTSEEVLETLRTRHPIVEKILEH 625 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + ++ G + + + TGR S QN+P Sbjct: 626 RGLKKLLGTYIDALPKLINPETGHIHTSFN-QTITTTGRLSSSNPNLQNIP--------- 675 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I G + AD + IE R++A ++G+ I+ Sbjct: 676 ---------------VRNEEGKEIRKAFIPEPGCEFFSADYSQIELRIMAHLSGDPHMIE 720 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T AK + P+++V++E+R+ K + Y G A+ + Sbjct: 721 AFREGHDIHAATAAKVYKKPLEEVTREERSKAKTANFGIIYGITVFGLAERMNVSRAEAK 780 Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495 + + + SH+ ++ A+ Sbjct: 781 ELIDGYFTTYPKVKEYMQKSIETAREKGYTETIYHRKCYLRDINSHNAVVRGYAERNAIN 840 Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 + G+A +++K A A + + +LQ+ +L +E Sbjct: 841 APIQGSAADIIKIAMIAIYRRFQKEHIRSKMILQVHDELNFSVYPEEKER 890 >gi|237749335|ref|ZP_04579815.1| DNA polymerase I [Oxalobacter formigenes OXCC13] gi|229380697|gb|EEO30788.1| DNA polymerase I [Oxalobacter formigenes OXCC13] Length = 914 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 103/599 (17%), Positives = 195/599 (32%), Gaps = 117/599 (19%) Query: 5 FIDIETRSPQ--PLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMP-----S 55 ID ET S VG+ E A A+ + +P Sbjct: 340 AIDTETTSLDVMNAKLVGISLSIEPGHAAYIPLAHHS---------MEQSEQLPLQSVLD 390 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L +L + V N ++ + GI + T + + L+ Sbjct: 391 KLKPWLENPKKHKVGQNLKYDSHVLANY-GIRLQGI-VHDTLLESYVLESHRRHDMDSLS 448 Query: 116 LNFSEHL-----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 F ++ +G + I F + +ID + Y D + T Sbjct: 449 ERFLDYKPVSYTDICGKGASQIG-FDEIAIDVATH----------------YAAEDADVT 491 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +L + + P E ++ Q + G ID+D + + + Sbjct: 492 LQLHQSMWPRLKENDGLRFIYEKIEIPTSIVLQKMERNGVLIDVDKLNVQSRELGVKMDS 551 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L E+ +T G + L LF + ++ + S S + +LA+D L Sbjct: 552 LQENAY-VTAGQPFNLNSPKQLGELLFDKLKLPMIKKTPSGAPST-SEEVLEKLAEDFPL 609 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ + KL + L V+ GR+ + TGR + QN+P + Sbjct: 610 PKIILDYRGMSKLKTTYTDKLPRMVNPETGRVHTNYA-QAVAVTGRLASNDPNLQNIPIR 668 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IAS G K++ AD + IE R++A ++ Sbjct: 669 S------------------------EEGRRIREAFIASPGNKIISADYSQIELRIMAHLS 704 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + +KAF +G+D++ T ++ F+ +V+ +QR KV+ L Y A Sbjct: 705 DDASLLKAFHDGQDVHRATASEIFDITPLEVTSDQRRYAKVINFGLIYGMSAFGVASNLG 764 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQ 488 + + ++ + + + D E LW+ + Sbjct: 765 ISRTDAKNYIDRYFERYPGVARYMDETRQLAREQGYVETVFGRRLWLPEINSPNGPRRQA 824 Query: 489 YPEFAVKDKLIGTACELVK------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K + W K + +L + + V E + R Sbjct: 825 AERAAINAPMQGTAADIIKLSMIAVQDWLEKEKLDSKLIMQVHDELVLDVPEKELVLVR 883 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + DI+ M K +++ VHDE+V + P+ V L LM + Sbjct: 835 QGTAADIIKLSMIAVQDWLEKEKLDSKLIMQVHDELVLDVPEKELVLVREKLPELMAQV 893 >gi|325141470|gb|EGC63944.1| DNA polymerase I [Neisseria meningitidis 961-5945] Length = 930 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 106/593 (17%), Positives = 198/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + +S D R+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPDMISPQDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 ++ + + + + + A+ + Sbjct: 791 RYFARYPGVAEYMQRAKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRAK---------HQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 851 GTASDLIKRAMIDVRNWLSDGIDSKLVMQVHDELVLEVVETELDFVKEKLPQI 903 >gi|325204933|gb|ADZ00387.1| DNA polymerase I [Neisseria meningitidis M01-240355] Length = 908 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 109/594 (18%), Positives = 202/594 (34%), Gaps = 94/594 (15%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + + ID ET S L + + A +AV ++ P +L D + L Sbjct: 330 NTIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRL 385 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110 +L + + + N +++ +F I ++LA +GL L Sbjct: 386 KPHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELS 441 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + + +G I + Y A+ + + D E Sbjct: 442 ERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQ 499 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E+++++ E + + + G +ID + + + E KL++ D Sbjct: 500 LEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQ 553 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 554 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSL 612 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 613 AKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT--------- 662 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 663 ---------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 707 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 708 NGEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 767 Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498 ++ + + + ++ + + A+ + Sbjct: 768 DRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPM 827 Query: 499 IGTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 828 QGTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 881 >gi|319638957|ref|ZP_07993715.1| DNA polymerase I [Neisseria mucosa C102] gi|317399861|gb|EFV80524.1| DNA polymerase I [Neisseria mucosa C102] Length = 930 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 107/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F DI S+LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ L GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILVDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSIIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGIAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A K + ++Q+ +L + ++ Sbjct: 851 GTASDLIKRAMIDVSRWLSYDLKSKLIMQVHDELVLEVPEAELDLVKEKLPQI 903 >gi|325199072|gb|ADY94528.1| DNA polymerase I [Neisseria meningitidis G2136] Length = 930 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 109/593 (18%), Positives = 201/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL++ D Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQQAYAAADQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 851 GTASDLIKRAMIDVRNCLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903 >gi|313669194|ref|YP_004049478.1| DNA polymerase I [Neisseria lactamica ST-640] gi|313006656|emb|CBN88122.1| DNA polymerase I [Neisseria lactamica 020-06] Length = 932 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 106/595 (17%), Positives = 202/595 (33%), Gaps = 95/595 (15%) Query: 2 SKLFIDIETRSPQPLPKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 K+ ID ET S + V A +AV ++ P +L D + L Sbjct: 353 EKIGIDTETTSLDAMNAAPVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QYVLDRL 408 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110 +L + + + N +++ +F I + ++LA +GL L Sbjct: 409 KPHLENPALKKIGQNLKYDQHVFANC---GIALNGIVGDAMLASYIIESHLGHGLD-ELS 464 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + + +G I + Y A+ + + D + Sbjct: 465 GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHL-RAQMD-DKQ 522 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 LEMYEKM------ELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQ 576 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GI + + I + + QLA D L ++ ++ Sbjct: 577 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSL 635 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E +S D R+ T + TGR +G QN+P + Sbjct: 636 AKLKSTYTDKLPEMISPRDKRVHTTYA-QAVAITGRLAGNNPNLQNIPIRT--------- 685 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 686 ---------------EEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 730 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 731 NGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 790 Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498 ++ + + + + + ++ + A+ + Sbjct: 791 DRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLSDIRHTNANIRARAERAAINAPM 850 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + + ++Q+ +L + ++ Sbjct: 851 QGTASDLIKRAMIDVSRWLSDDLLQSKLIMQVHDELVLEVPEAELDLVKEKLPQM 905 >gi|313902130|ref|ZP_07835540.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] gi|313467593|gb|EFR63097.1| DNA polymerase I [Thermaerobacter subterraneus DSM 13965] Length = 1072 Score = 270 bits (691), Expect = 5e-70, Method: Composition-based stats. Identities = 77/383 (20%), Positives = 146/383 (38%), Gaps = 58/383 (15%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 VEA + E L + + + G +D + +L L + ++L E I + Sbjct: 653 VEAELAARGLERVYREIELPLVPVLAAMEEAGIAVDRRQLEELGRLFTRRSQELAEQIYE 712 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + T L LF G+ +V ++ + LA + L Sbjct: 713 LAGQTF-NINSTQQLGQILFERLGLPVVKKTKTG--YSTDAEVLETLAARHPIAELVLEY 769 Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 +++KL + L+E + DGR+ T Q A+ TGR S QN+P ++ Sbjct: 770 RSLVKLQGTYVDGLAEHIGPDGRIHTTFQQTVAA-TGRLSSTQPNLQNIPIRDEP----- 823 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G +LV AD + IE RVLA +G+ ++A Sbjct: 824 -------------------GRSLRRAFVAPPGHRLVAADYSQIELRVLAHYSGDPGLVEA 864 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 FA G+D++ T ++ F P+++V+ EQR + K + L Y G A+ + + Sbjct: 865 FAQGQDVHARTASEIFGVPLEQVTPEQRRVAKAVNFGLAYGQTDFGLARALRIDRADARR 924 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKD 496 ++++ + + + + ++ A+ Sbjct: 925 FMERYFERYPGVKRYMEETVRRARQQGEVTTLLGRRRPVPEIRHRVFHIRQNAERVAINT 984 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 + GTA +++K A H+ + + Sbjct: 985 PIQGTAADIMKLAMIRVHRALAE 1007 >gi|240849688|ref|YP_002971076.1| DNA polymerase I [Bartonella grahamii as4aup] gi|240266811|gb|ACS50399.1| DNA polymerase I [Bartonella grahamii as4aup] Length = 969 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 93/495 (18%), Positives = 180/495 (36%), Gaps = 77/495 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115 L L D +V+ + N ++ ++ K+ DI + T +L+ + L+ Sbjct: 443 LKPILEDSSVLKIGQNIKYDWLVMKQY---DIIISSFDDTMLLSYAFDAGILTHNMDDLS 499 Query: 116 LNFSEHL----TKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEA 169 + +H + I F + + Y RA+ ++ WQ+ Sbjct: 500 ERWLKHKPISYKDLTHNGKKITSFAQVDLKQATLYAAERADITLRLWQVLKPQLV--ARG 557 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ++++RL +R L + + +RG ID ++L+L +AQ L+E+I K D Sbjct: 558 MTKIYERL------DRPLVEVLARMEERGILIDRQILLRLSGELAQAALILEEEIYKQAD 611 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288 + L LF G+ ++G + S + +LA + +L R Sbjct: 612 EKFNLA-SPKQLGDILFGKMGLSGGAKTKGG-QWSTSAQTLEELAAEGHVLPRKIIEWRQ 669 Query: 289 ILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L + S GR+ + TGR S QN+P + Sbjct: 670 LAKLKSTYTDALPSYIFSKTGRVHTNYSL-AITSTGRLSSSEPNLQNIPVRT-------- 720 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA G L+ AD + IE R+LA IA +AF Sbjct: 721 ----------------AEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKALKEAF 764 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 A G DI+ T ++ F I+ + + R K + + Y G A G Sbjct: 765 AKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQEAGRY 824 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 +Q + + + + + + ++ ++ ++ A+ Sbjct: 825 IQLYFERFPGIKDYMEKTKIFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAINAP 884 Query: 498 LIGTACELVKKAWRA 512 + G+A +++++A Sbjct: 885 IQGSAADIIRRAMIQ 899 >gi|171057747|ref|YP_001790096.1| DNA polymerase I [Leptothrix cholodnii SP-6] gi|170775192|gb|ACB33331.1| DNA polymerase I [Leptothrix cholodnii SP-6] Length = 934 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 111/586 (18%), Positives = 195/586 (33%), Gaps = 107/586 (18%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQA---VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 ID ET S P+ +G+ ++A Q + + P +L + + L Sbjct: 360 AIDTETDSLDPMRARIIGI-SFAVQPLEAAYVPVGHDYPGAPDQLP----LDEVLARLRP 414 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 +L D V N ++ +F G+ + T + + A LA Sbjct: 415 WLEDAGTRKVGQNIKYDSHVFANH-GVTVRGYA-HDTMLESYVLEAHKPHGLASLA---D 469 Query: 120 EHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 HL G++ I C P+ + + D E T ++ + L Sbjct: 470 RHL-----GRSGINYEDLCGKGAGQIPFSHVAVDQASTYS------GEDSEMTLQVHQTL 518 Query: 178 IPLSDGE---RDLWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P + E R+L+ + I G ID ++ + +AQ L+++ Sbjct: 519 WPQLEAEPRLRELYETIEMPSAEVLVRIERNGVLIDAGVLARQSHQLAQRMHTLEQEAHA 578 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + + LF G+ + + S + +LA D L Sbjct: 579 IAGQPF-NMSSPKQIGEILFTKLGLPVKKKTASGAPST-DEEVLQELAADYPLPARILEH 636 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ KL + L V+ GR+ + TGR S QN+P + Sbjct: 637 RSLAKLKGTYTDKLPLMVNPSTGRVHTNYA-QAVAITGRLSSNDPNLQNIPIRT------ 689 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR +A+ G KLV AD + IE R++A I+G+ +K Sbjct: 690 ------------------AEGRRVREAFVAAPGHKLVSADYSQIELRLMAHISGDANLLK 731 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AFA+G D++ T A+ FN V+ EQR K + L Y G A Sbjct: 732 AFADGMDVHRATAAEVFNIAAADVTSEQRRYAKTINFGLIYGMGAFGLAASLGIEQKAAR 791 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVK 495 ++++ + D +A + L + A+ Sbjct: 792 DYIERYFARYPDVKRYMDETKAGAAQLGHVETLFGRRIVLPEIKGGNGPRKAAAERQAIN 851 Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV 531 + GTA +L+K A A + ++Q+ +L Sbjct: 852 APMQGTAADLIKLAMIAVQKAIDDEGRASKMIMQVHDELVLEVPEA 897 >gi|254784333|ref|YP_003071761.1| DNA polymerase I [Teredinibacter turnerae T7901] gi|237686342|gb|ACR13606.1| DNA polymerase I [Teredinibacter turnerae T7901] Length = 908 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 105/581 (18%), Positives = 190/581 (32%), Gaps = 114/581 (19%) Query: 7 DIETRSPQ--PLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S VGV E +A A+ + P +L + + + L L Sbjct: 335 DTETTSLNYMDAEIVGVSFAVEPGKAAYVPVAHDYLGAPEQL----SREHVLARLKPLLE 390 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSS------LKNACLA 115 ++ + V N ++ + DI K T + + + S L L Sbjct: 391 NDGLKKVGQNLKYDANVLANY---DIALKGIAYDTMLESYVHNSTGSRHDMDTLAELHLG 447 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 +G + F + + G Y D + T L + Sbjct: 448 HKTIHFEDIAGKGAKQLT-FNQI----------------KLEEAGPYAAEDADITLRLHQ 490 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P +D E L + I G +D L+ +L KL+++ Sbjct: 491 ALWPKVAEAEGLKTVFNDVELPLVSILSRIERNGALLDTKLLGELSLQHGASIVKLEKEA 550 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + L LF + +V + S + + +LA D L + Sbjct: 551 YELAGEEF-NLGSPKQLATILFEKMNLPVVKKTAKGAPST-NEEVMQELALDYPLPSVIL 608 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L V+ GR+ + + TGR S QN+P + Sbjct: 609 QHRSLSKLKSTYTDKLPTMVNKKTGRVHTSY-HQAVAATGRLSSSDPNLQNIPIKT---- 663 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G K+V AD + IE R++A ++ + Sbjct: 664 --------------------DEGRRIRQAFIAPAGYKMVAADYSQIELRIMAHLSNDPGL 703 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 KAFA G D++ +T A+ F T ++ VS EQR K + L Y A+ + + Sbjct: 704 QKAFAEGLDVHKSTAAEVFGTALENVSSEQRRSAKAINFGLIYGMSAFGLARQLRIGRND 763 Query: 455 CGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFA 493 + + + + + + S + + A Sbjct: 764 AQTYIDTYFERYPGVAEYMANIRKSAAEKGYVETLLGRRLYLPEINSSNGMRRQAAERVA 823 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + + GTA +++K+A + ++Q+ +L Sbjct: 824 INAPMQGTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDEL 864 Score = 45.1 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMT 652 Q + DI+ M + I++ VHDE+V E LC +M+ Sbjct: 829 QGTAADIIKRAMIDVDAWLQTEQIDARIIMQVHDELVLEVAAADAEAISAKLCDIMS 885 >gi|293397866|ref|ZP_06642072.1| DNA polymerase I [Neisseria gonorrhoeae F62] gi|291611812|gb|EFF40881.1| DNA polymerase I [Neisseria gonorrhoeae F62] Length = 930 Score = 270 bits (690), Expect = 5e-70, Method: Composition-based stats. Identities = 102/599 (17%), Positives = 195/599 (32%), Gaps = 106/599 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-MPSDL---- 57 + ID ET S A A + + A+ +P L Sbjct: 353 TIGIDTETTSLD----------AMNAELVGISIAFQAGEAVYIPVGHSLTAVPEQLDLQD 402 Query: 58 -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGL 105 +L + + + N +++ +F I ++LA +GL Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY---GIALNNIAGDAMLASYIIESHLGHGL 459 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 L L L + + +G I+ + Y A+ + + Sbjct: 460 D-ELSGRWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEA-RLRAQM 517 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D + E+++++ E + + + G +ID + + + E KL+++ Sbjct: 518 D-DKQLEMYEKM------ELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAY 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLAS 284 + L+ LF GI + + I + + + QLA D L ++ Sbjct: 571 AAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIIL 629 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L E +S D R+ T + TGR + QN+P + Sbjct: 630 QNRSLAKLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---- 684 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR A G +V AD + IE R++A ++G+ Sbjct: 685 --------------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTL 724 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 I AF +GED++ T A+ F T + VS EQR K + L Y G AK Sbjct: 725 IAAFQSGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLS 784 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFA 493 + ++ + + + ++ + + A Sbjct: 785 AKNFIDRYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAA 844 Query: 494 VKDKLIGTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + GTA +L+K+A + V+Q+ +L + ++ Sbjct: 845 INAPMQGTASDLIKRAMINVRNWLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903 >gi|332171730|gb|AEE20984.1| DNA polymerase I [Glaciecola agarilytica 4H-3-7+YE-5] Length = 928 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 95/557 (17%), Positives = 188/557 (33%), Gaps = 111/557 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT---- 83 A A+ + D P +L ++ ++ + L D+ V + +++ + Sbjct: 379 AAYLPLAHDYADAPEQL----DRDSVLALFKPLLEDKNKAKVGQHLKYDKNVLANYDINL 434 Query: 84 --LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSI 140 + D + ++ SV A + + S A L S + GK F + + Sbjct: 435 QGIAYDTMLESYVLDSV-ATRHDMDS---LAQHYLGLSTVHFEDIAGKGAKQLTFNQIPL 490 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189 + + Y D + T L + LS+ E L Sbjct: 491 EQAAH----------------YAAEDADITLRLHNHIWKKLNQSPELASVLSEIEVPLAT 534 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + G ID + + + +A +L+ ++ L + T L+ LF Sbjct: 535 VLAKMEQFGVLIDSQKLGQQSQDLASRILQLENEVHILAGEEF-NLGSTKQLQEILFKKL 593 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DG 303 + ++ + S S + +LA L +L + KL + L + ++ G Sbjct: 594 DLPVLKKTPKGAPST-SEEVLQELALTYPLPKLLMEFRVLSKLKNTYTDKLPKMINQRSG 652 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P + Sbjct: 653 RVHTSY-HQAITATGRLSSTEPNLQNIPIRT------------------------EQGRR 687 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 VR I G K+V AD + IE R++A ++ + +KAF+ G+DI+ T A+ FN +++ Sbjct: 688 VRQAFIPRPGYKIVAADYSQIELRIMAHLSQDKGLLKAFSQGKDIHTATAAEVFNVSLEE 747 Query: 424 VSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED----- 474 V+ EQR K + L Y A K + + + + + Sbjct: 748 VTTEQRRNAKAINFGLIYGMSAFGLSKQLNVSRQDAQHYMDLYFERYPGVLKYMEDARVV 807 Query: 475 ----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------- 510 + + + A+ + GTA +++KKA Sbjct: 808 AKEKGYVSTVFGRRLYLPDINASNGLRRKGAERAAINAPMQGTAADIIKKAMLKVDAWID 867 Query: 511 ---RAKHQGVLQLWKDL 524 + + ++Q+ +L Sbjct: 868 TLPNDQTRMIMQVHDEL 884 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 603 QAISRDILCEGMKNATK-------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 Q + DI+ + M + +++ VHDE++ E + S T+ LM K Sbjct: 848 QGTAADIIKKAMLKVDAWIDTLPNDQTRMIMQVHDELIFEIKEQNVESDKNTIVDLMEKA 907 >gi|59802404|ref|YP_209116.1| hypothetical protein NGO2103 [Neisseria gonorrhoeae FA 1090] gi|254492832|ref|ZP_05106003.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|260441414|ref|ZP_05795230.1| hypothetical protein NgonDG_10092 [Neisseria gonorrhoeae DGI2] gi|268593903|ref|ZP_06128070.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268595960|ref|ZP_06130127.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268598080|ref|ZP_06132247.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268600421|ref|ZP_06134588.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268602653|ref|ZP_06136820.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268681202|ref|ZP_06148064.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268683373|ref|ZP_06150235.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268685682|ref|ZP_06152544.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291044776|ref|ZP_06570485.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] gi|59719299|gb|AAW90704.1| putative DNA polymerase I [Neisseria gonorrhoeae FA 1090] gi|226511872|gb|EEH61217.1| DNA polymerase I [Neisseria gonorrhoeae 1291] gi|268547292|gb|EEZ42710.1| DNA polymerase I [Neisseria gonorrhoeae 35/02] gi|268549748|gb|EEZ44767.1| DNA polymerase I [Neisseria gonorrhoeae FA19] gi|268582211|gb|EEZ46887.1| DNA polymerase I [Neisseria gonorrhoeae MS11] gi|268584552|gb|EEZ49228.1| DNA polymerase I [Neisseria gonorrhoeae PID18] gi|268586784|gb|EEZ51460.1| DNA polymerase I [Neisseria gonorrhoeae PID1] gi|268621486|gb|EEZ53886.1| DNA polymerase I [Neisseria gonorrhoeae PID332] gi|268623657|gb|EEZ56057.1| DNA polymerase I [Neisseria gonorrhoeae SK-92-679] gi|268625966|gb|EEZ58366.1| DNA polymerase I [Neisseria gonorrhoeae SK-93-1035] gi|291011670|gb|EFE03666.1| DNA polymerase I [Neisseria gonorrhoeae DGI2] Length = 930 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 105/593 (17%), Positives = 201/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---GIALNNIAGDAMLASYIIESHLGHGLD-ELSG 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D + Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEA-RLRAQMD-DKQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S D R+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF + Sbjct: 685 --------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQS 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 851 GTASDLIKRAMINVRNWLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 903 >gi|261379438|ref|ZP_05984011.1| DNA polymerase I [Neisseria subflava NJ9703] gi|284797890|gb|EFC53237.1| DNA polymerase I [Neisseria subflava NJ9703] Length = 938 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 107/551 (19%), Positives = 193/551 (35%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 K+ ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 KIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F DI S+LA +GL L Sbjct: 409 PHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + + Y A+ + D Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIVQATEYAAQDADFALRLEAHLRAQMDD--KQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLSIDNISAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 851 GTASDLIKRAM 861 >gi|325201030|gb|ADY96485.1| DNA polymerase I [Neisseria meningitidis H44/76] Length = 916 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 191/551 (34%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 331 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 386 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 387 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 442 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 443 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 500 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 501 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 554 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 555 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 613 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 614 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 662 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 663 --------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 708 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 709 GEDVHRRTAAEVFGTAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 768 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 769 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 828 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 829 GTASDLIKRAM 839 >gi|34496234|ref|NP_900449.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] gi|34102088|gb|AAQ58455.1| DNA-directed DNA polymerase I [Chromobacterium violaceum ATCC 12472] Length = 928 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 100/597 (16%), Positives = 184/597 (30%), Gaps = 99/597 (16%) Query: 2 SKLFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + D ET S P+ VGV E A + + P +L A + L Sbjct: 351 KVVSFDTETTSLDPMQARIVGVSFSVEAGHAAYLPLEHHYAGAPQQLP----LEAALAKL 406 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L D + N ++ + GI + + + + LA Sbjct: 407 KPWLEDASKKKCGQNLKYDCHVLANH-GIALAGIAD-DSMLASYVLESHQRHNMDDLARR 464 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-- 175 + E C + + + Y D + T L + Sbjct: 465 ------HLGENTVSYEEICGKGAKQIGFSEVDVD------IAANYAAEDADITLRLNQFF 512 Query: 176 --RLI-----PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 +L D E + + + G ID D + + + +L++ +L Sbjct: 513 AGQLFGDLEKVYRDIELPVAEVLFKMERHGVLIDRDKLAAQSHQLGSQMLELEQRAYELA 572 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG-TLKSILSHSNITQLAKDLILNRLASSGS 287 + L+ LF I + + + S + QLA D L + Sbjct: 573 GQPF-NLNSPKQLQEILFGKLAIPTKGVKKTPSGGYSTDESVLEQLALDHPLPKCILEYR 631 Query: 288 AILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + GR+ T + TGR + QN+P + Sbjct: 632 GLAKLKSTYTDKLPTLIYPQTGRVHTTYA-QAVAITGRLASNDPNLQNIPVRT------- 683 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 VR IA G ++V AD + IE R++A ++ ++ +KA Sbjct: 684 -----------------AEGRRVREAFIAPAGWQIVSADYSQIELRIMAHLSDDEGMLKA 726 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA+GEDI+ T A+ F + V+ +QR K + L Y A S Sbjct: 727 FASGEDIHRATAAEVFGVELAAVTSDQRRAAKAINFGLIYGMSAFGLAAQLDIERSAAQQ 786 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKD 496 + ++ + + + ++ + A+ Sbjct: 787 YIDRYFMRYPGVAEYMQATREKAREQGYVETVFGRRLYLPDIKLSNPGRRAGAERAAINA 846 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +L+K A A + + ++Q+ +L E + Sbjct: 847 PMQGTAADLIKLAMIAVQDWLERDGLQSKLIMQVHDELVLEVPQAELEQVKRRLPEI 903 >gi|291514801|emb|CBK64011.1| DNA polymerase I [Alistipes shahii WAL 8301] Length = 958 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 99/541 (18%), Positives = 177/541 (32%), Gaps = 91/541 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + DE + + N F+ ++ ++ LGI I R T +L S LA Sbjct: 434 VRPLFEDEKIAKIGQNIKFDLMVLRR-LGITIR-GRMYDTMILHYLLDPESRHNMNALAE 491 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + K E + LI + K + + EY D + T +L + Sbjct: 492 KYLNY--KPIEIETLIGKGSKQ----------LTMDLVNVERVKEYAAEDADVTLQLKQA 539 Query: 177 LIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P+ + E + + I G RID + + + ++ +L+ I Sbjct: 540 LYPMIEQIGLQHLYFEIEEPMIAVLADIEMAGMRIDSEALAVYAVELNRKLAELEAAIRT 599 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF I T + + A+ + L Sbjct: 600 EAGEPNLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQLFARKHRIVDLILEY 659 Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL L + V+ S GR+ + + TGR S QN+P Sbjct: 660 RGVKKLLSTYVEALPQLVNRSTGRIHTSFN-QAVTATGRLSSTNPNLQNIP--------- 709 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399 +R I S+ L+ AD + +E R++A ++G++ I Sbjct: 710 ---------------VRDDMGRRIRKAFIPSDDDHLLLSADYSQVELRLMAHLSGDESLI 754 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF +GEDI+ T AK FN +D+V+ E+R K + Y G ++ + Sbjct: 755 AAFEHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQRLEIPRKEA 814 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + + D SH+ + AV Sbjct: 815 KEIIDGYFASYPGVKKYMDNVVEKAKEEGFVSTIFGRRRYLNDIASHNAIARGLAERNAV 874 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVA 544 + G+A +++K A H+ +LQ+ +L QE + Sbjct: 875 NAPIQGSAADIMKIAMINVHRRFAAEGIRSRVILQVHDELVVDMLRSEQERVTAIVTECM 934 Query: 545 N 545 Sbjct: 935 E 935 >gi|194100055|ref|YP_002003195.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|239998054|ref|ZP_04717978.1| hypothetical protein Ngon3_01018 [Neisseria gonorrhoeae 35/02] gi|240013236|ref|ZP_04720149.1| hypothetical protein NgonD_01055 [Neisseria gonorrhoeae DGI18] gi|240015682|ref|ZP_04722222.1| hypothetical protein NgonFA_00693 [Neisseria gonorrhoeae FA6140] gi|240079818|ref|ZP_04724361.1| hypothetical protein NgonF_00666 [Neisseria gonorrhoeae FA19] gi|240112026|ref|ZP_04726516.1| hypothetical protein NgonM_00295 [Neisseria gonorrhoeae MS11] gi|240114773|ref|ZP_04728835.1| hypothetical protein NgonPID1_00698 [Neisseria gonorrhoeae PID18] gi|240116973|ref|ZP_04731035.1| hypothetical protein NgonPID_00683 [Neisseria gonorrhoeae PID1] gi|240120307|ref|ZP_04733269.1| hypothetical protein NgonPI_00730 [Neisseria gonorrhoeae PID24-1] gi|240122611|ref|ZP_04735567.1| hypothetical protein NgonP_01466 [Neisseria gonorrhoeae PID332] gi|240124799|ref|ZP_04737685.1| hypothetical protein NgonSK_00995 [Neisseria gonorrhoeae SK-92-679] gi|240127317|ref|ZP_04739978.1| hypothetical protein NgonS_01450 [Neisseria gonorrhoeae SK-93-1035] gi|193935345|gb|ACF31169.1| PolA [Neisseria gonorrhoeae NCCP11945] gi|317165496|gb|ADV09037.1| hypothetical protein NGTW08_2086 [Neisseria gonorrhoeae TCDC-NG08107] Length = 908 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 105/593 (17%), Positives = 201/593 (33%), Gaps = 94/593 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 331 TIGIDTETTSLDAMNAELVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 386 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 387 PHLENPALKKIGQNLKYDQHVFANY---GIALNNIAGDAMLASYIIESHLGHGLD-ELSG 442 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D + Sbjct: 443 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEA-RLRAQMD-DKQL 500 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 501 EMYEKM------ELPVAQVLFEMECNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 554 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 555 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 613 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S D R+ T + TGR + QN+P + Sbjct: 614 KLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 662 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF + Sbjct: 663 --------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQS 708 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 709 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 768 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 769 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 828 Query: 500 GTACELVKKAWRA---------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A + V+Q+ +L + ++ Sbjct: 829 GTASDLIKRAMINVRNWLSDGIGSKLVMQVHDELVLEVVETELDFVKEKLPQI 881 >gi|254804208|ref|YP_003082429.1| DNA polymerase I [Neisseria meningitidis alpha14] gi|254667750|emb|CBA03667.1| DNA polymerase I [Neisseria meningitidis alpha14] Length = 937 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 108/579 (18%), Positives = 197/579 (34%), Gaps = 89/579 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D Sbjct: 465 RWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S D R+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAW----RAKHQGVLQLWKDLTEGFACVVQE 534 GTA +L+K+A R + LW L V + Sbjct: 851 GTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHD 889 >gi|295687670|ref|YP_003591363.1| DNA polymerase I [Caulobacter segnis ATCC 21756] gi|295429573|gb|ADG08745.1| DNA polymerase I [Caulobacter segnis ATCC 21756] Length = 966 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 84/495 (16%), Positives = 156/495 (31%), Gaps = 82/495 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D V+ VA N+ ++ + + GI + GL + L Sbjct: 441 LKPLLEDPAVLKVAQNAKYDIAVLARH-GIQVSPIEDTMLISYVLEAGLHGHGMDELSEL 499 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 ++ K I + A Y D + T L++ Sbjct: 500 WLGHKPIPFKQVAGT----GKAQISFKHVALSEATA---------YAAEDADVTLRLYET 546 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P ER + + + + G ++D + + +L + + + + Sbjct: 547 LKPRLAREGLLTVYETLERPMPAVLAAMENDGIKVDPEALRRLSNEFSLRMAEFEARATE 606 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + + LF I + T + + LA + L R+ Sbjct: 607 LVGRPF-NLGSPKQIGDVLFGEMQIKGGKKT-ATGQWSTDSDVLESLALEHELPRVLLDW 664 Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL L A++ GR+ + A+ TGR S QN+P + Sbjct: 665 RQLSKLKGTYTENLVAAIAERTGRVHTSYAL-AATTTGRLSSSDPNLQNIPVRT------ 717 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA GK L+ AD + IE R+LA I + Sbjct: 718 ------------------EEGRKIRKAFIAPQGKVLISADYSQIELRLLAHIGDIPQLKR 759 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T ++ F+TPI+ + R K + + Y G A G Sbjct: 760 AFQEGLDIHAMTASEMFDTPIEGMDPMIRRRAKAINFGIVYGISAFGLANQLGIPQGEAG 819 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 ++ + + + D + ++ + + A+ Sbjct: 820 AYIKTYFERFPGIQAYMDATKAFVREHGYVTTIFGRKINIPEIQAKSVGQRQFAERAAIN 879 Query: 496 DKLIGTACELVKKAW 510 + G A +++++A Sbjct: 880 APIQGAAADVMRRAM 894 >gi|225075916|ref|ZP_03719115.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] gi|224952772|gb|EEG33981.1| hypothetical protein NEIFLAOT_00940 [Neisseria flavescens NRL30031/H210] Length = 937 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 105/585 (17%), Positives = 190/585 (32%), Gaps = 101/585 (17%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAM-PSDL---- 57 + ID ET S A A + + A+ P L Sbjct: 353 TIGIDTETTSLD----------AMNASLVGISIAFQAGEAVYIPVGHSQTAAPEQLDLQD 402 Query: 58 -----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGL 105 +L + + + N +++ +F I ++LA +GL Sbjct: 403 VLGRLKPHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGL 459 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 L L L + + +G I+ + Y A+ + + Sbjct: 460 D-ELSERWLGLETITYESLCGKGAKQISFADVAIGQATEYAAQDADFALRLEAHL-RAQM 517 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D E+++++ E + + + G +ID + + + E KL+++ Sbjct: 518 DA-KQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAY 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLAS 284 + L+ LF GI + + I + + + QLA D L ++ Sbjct: 571 AAAGQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIIL 629 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL + L E +S D R+ T + TGR + QN+P + Sbjct: 630 QNRSLAKLKSTYTDKLPEMISPRDNRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---- 684 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR A G +V AD + IE R++A ++G+ Sbjct: 685 --------------------AEGRRVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTL 724 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 I AF NGED++ T A+ F T + VS EQR K + L Y G AK Sbjct: 725 IAAFQNGEDVHRRTAAEVFGTAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLS 784 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFA 493 + ++ + + + ++ + + A Sbjct: 785 AKNFIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAA 844 Query: 494 VKDKLIGTACELVKKAW----RAKHQGVLQLWKDLTEGFACVVQE 534 + + GTA +L+K+A R + LW L V + Sbjct: 845 INAPMQGTASDLIKRAMIDVSRWLSECEASLWDCLKSKLIMQVHD 889 >gi|325129412|gb|EGC52244.1| DNA polymerase I [Neisseria meningitidis OX99.30304] Length = 937 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 102/551 (18%), Positives = 189/551 (34%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +A+ ++ P +L D + L Sbjct: 352 TIGIDTETTSLDAMNASLVGISIAFQAGEAIYIPVGHSLTAAPEQL-DL---QDVLGRLK 407 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 408 PHLENPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 463 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D Sbjct: 464 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA-KQL 521 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 575 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 634 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 635 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 730 GEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKNFID 789 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 849 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 850 GTASDLIKRAM 860 >gi|167627238|ref|YP_001677738.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597239|gb|ABZ87237.1| DNA polymerase I [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 896 Score = 270 bits (689), Expect = 7e-70, Method: Composition-based stats. Identities = 95/509 (18%), Positives = 172/509 (33%), Gaps = 72/509 (14%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L D VAHN F+ + K G+ I + T ++A Sbjct: 368 EIVLDILKPIFVDSQKSKVAHNFKFDEKVLSKY-GVKI-VNQVNDTMIMAYVLKSSGKHD 425 Query: 111 NACLA---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCK 164 L+ L + T G+ + Y A+ + + F + K Sbjct: 426 MDSLSKEHLGIEPIAYTTLAGTGRNQLTLDQIDIEKVAKYAAEDADITFRLYNHFLKMLK 485 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D E L+ S+ E L ++ + G +ID +++ + K+L+ Sbjct: 486 DD-EVLYSLY------SNVEMPLTIILNNMERIGVKIDATKLIEQSANLEDSIKELEIKC 538 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L S LR LF G+ V + ++ S + QLA++ + L Sbjct: 539 YDLAGQEFNLS-SPVQLREILFDKMGLPPVKKTAKG-QASTSEEVLVQLAEEYEIAALIM 596 Query: 285 SGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + + +GR+ + G + TGR S QN+P + Sbjct: 597 KYRHLSKLKNTYTDKLPKMLDVNGRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS----- 650 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A +V AD + IE R++A ++ + + Sbjct: 651 -------------------PEGRKIRQAFVAEQEFCVVAADYSQIELRIMAHLSKDKNLL 691 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 KAF G DI+ T A+ +D V+ EQR K + L Y AK + Sbjct: 692 KAFNQGLDIHSATAAEVLGISLDMVTSEQRRRAKAINFGLIYGMSAFGLAKQLEIPRGEA 751 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + S + S ++ ++ A+ Sbjct: 752 QEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERAAI 811 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + GTA +++KKA + +L+ + D Sbjct: 812 NAPMQGTAADIIKKAMIDVNTMILREYND 840 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 10/125 (8%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 A+ +V K + +++ Y + + G YL +S+ + +R + Sbjct: 750 EAQEYIDVYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPDISSKNVIQRNAAERA 809 Query: 598 TENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFSV-GTLC 648 N +Q + DI+ + M + + +V+ VHDE+V E + + Sbjct: 810 AINAPMQGTAADIIKKAMIDVNTMILREYNDDIKMVMQVHDELVFEVRKAKLNEITTKIK 869 Query: 649 SLMTK 653 S+M Sbjct: 870 SIMET 874 >gi|126640679|ref|YP_001083663.1| DNA polymerase I [Acinetobacter baumannii ATCC 17978] Length = 879 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 107/584 (18%), Positives = 201/584 (34%), Gaps = 94/584 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L + Sbjct: 306 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYIPLAHNYENAPQQL----NRE 354 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ +F I K W S+LA N + Sbjct: 355 QVLAQIKPVLENEAVKKIGHHLKYDAHIFANH---GIELKGWYFDSMLASYVLNAAATRH 411 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 412 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 469 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 470 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 526 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + LF GI + T + S S + ++ L L Sbjct: 527 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 584 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 585 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 635 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 636 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 680 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 681 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 740 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 741 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 800 Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 L G+A +++K A + + +L + + V + Sbjct: 801 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 844 >gi|170749936|ref|YP_001756196.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] gi|170656458|gb|ACB25513.1| DNA polymerase I [Methylobacterium radiotolerans JCM 2831] Length = 1060 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 89/541 (16%), Positives = 180/541 (33%), Gaps = 93/541 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + V+ V N ++ ++ + GI++ T +++ L + + Sbjct: 534 LKPLLENPGVLKVGQNLKYDWVVLARY-GIEVAPFD--DTMLISYV--LDAGKGGHGMDE 588 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 HL + +A + + +A Y D + T L++ Sbjct: 589 LARRHLGHQPITFSDVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 639 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + P ER L + + RG R+D +++ +L +Q +L+E+I + Sbjct: 640 MKPRLVAEHRVAVYETLERPLLPVIARMEQRGIRVDREMLSRLSGDFSQILVRLEEEIQE 699 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285 S + LF G+ + + + + +LA+ L + Sbjct: 700 DAGEKF-SVGSPKQIGDILFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHELPKKILE 757 Query: 286 GSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L R+ + A+ TGR S QN+P + Sbjct: 758 WRQLSKLKSTYTDALQAHADRETARVHTSFSL-AATTTGRLSSSEPNLQNIPIRT----- 811 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A+ G +L+ AD + IE R+LA +A Sbjct: 812 -------------------EEGRRIRRAFVAAPGNRLISADYSQIELRLLAHMADIPELR 852 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 KAF +G DI+ T + F P+ +++ + R K + + Y G A Sbjct: 853 KAFEDGIDIHAATASAMFGVPLKEMTPDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 912 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++Q+ + + + + Q S++ + A+ Sbjct: 913 SAFIKQYFEQFPGIRDYIETTKKSCRDKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 972 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + G+A +++++A + +LQ+ +L A E R V Sbjct: 973 NAPIQGSAADIIRRAMTRMEAALAAKKLNARMLLQVHDELVFEVAEDEVERTIPIIRGVM 1032 Query: 545 N 545 Sbjct: 1033 E 1033 >gi|213156072|ref|YP_002318117.1| DNA polymerase I [Acinetobacter baumannii AB0057] gi|301344695|ref|ZP_07225436.1| DNA polymerase I [Acinetobacter baumannii AB056] gi|301595519|ref|ZP_07240527.1| DNA polymerase I [Acinetobacter baumannii AB059] gi|213055232|gb|ACJ40134.1| DNA polymerase I [Acinetobacter baumannii AB0057] Length = 923 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 106/584 (18%), Positives = 201/584 (34%), Gaps = 94/584 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQS 51 ID ET S + AE A A+ +++ P +L ++ Sbjct: 350 HFAIDTETTSLD-------YRIAEMVGFSIAFDAKDAYYVPLAHNYENAPQQL----DRE 398 Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSL 109 + + + L +E V + H+ ++ + I K W S+LA N + Sbjct: 399 QVLAQIKPVLENEAVKKIGHHLKYDAHISANH---GIELKGWYFDSMLASYVLNAAATRH 455 Query: 110 KNACLALNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A + HLT E GK + F + I+ + HV ++L+ E Sbjct: 456 GMDDVARVYLSHLTTTFEQIAGKGAKQKTFNQIEIEVAAHYAAEDAHV-TYRLY-EVLSN 513 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++A EL L + E + + + + G R+D + KL A+ + L+ + Sbjct: 514 KLKAHPELENILY---NIEMPVARILSGMEEDGIRLDHAFLDKLSVEFAKTMEDLENQAM 570 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + LF GI + T + S S + ++ L L Sbjct: 571 EIAGETFNIA-SPKQVGEILFDKLGIKGGKKT-ATGQYSTSESVLEKIEHPLTEIILEHR 628 Query: 286 GSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 G A LK + L E +D T + TGR S QN+P + Sbjct: 629 GLAKLKSTYTDRLIEQSHNDTHRVHTSYHQALTATGRLSSSDPNLQNIPIR--------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA G+ L+ AD + IE R++A + +D + AF Sbjct: 680 ---------------RQIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVHAF 724 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 725 QHGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTREESQNY 784 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++Q+ Q + ++ ++ ++ A+ Sbjct: 785 IKQYFQRYPGIYEYMQRTRQVASEQGFVETILGRRLYTPDIDARNVMVRKAAERAAINAP 844 Query: 498 LIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 L G+A +++K A + + +L + + V + Sbjct: 845 LQGSAADIIKLAMIEVDKILPKDQAKLLLQVHDELVFEVDSNIA 888 >gi|319404919|emb|CBI78519.1| DNA polymerase I [Bartonella sp. AR 15-3] Length = 925 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 92/544 (16%), Positives = 179/544 (32%), Gaps = 99/544 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L ++ ++ + N ++ ++ K+ I + S A G+ + + Sbjct: 399 LKPILENQAILKIGQNIKYDWLVMKQY-NIVMRSFDDTMLLSYALEAGISTHGMDILSER 457 Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 ++ + F + + + Y D + T L Sbjct: 458 WLGHKSITYKDLTYNGRKVNSFAQIDL----------------KQATLYAAEDADITLRL 501 Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++ L P +R L + + +RG +D ++ +L +AQ L+E+ Sbjct: 502 WQVLKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEE 561 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282 I +L + L LF G+ ++ + S + +LA + IL R Sbjct: 562 IYQLVGEKFNIA-SPKQLGDILFGKIGLPGGSKTKNG-QWSTSAQTLEELAAEGHILPRK 619 Query: 283 ASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + + KL + L + GR+ + TGR S QN+P + Sbjct: 620 IVNWRQLTKLKSTYTDALPSYILPKTGRVHTNYSLAT-TSTGRLSSSEPNLQNIPVRT-- 676 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ IAS G L+ AD + IE RVLA A Sbjct: 677 ----------------------AEGRKIRTAFIASKGYLLLSADYSQIELRVLAHFADIT 714 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 +AFA G+DI+ T A+ F ++ +S E R K + + Y G A Sbjct: 715 ALKEAFAQGQDIHAMTAAQMFGVAVEGMSSEIRRRAKAINFGIIYGISPFGLANQLGISR 774 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPE 491 +Q + + + + + + H ++ Sbjct: 775 KEASHYIQLYFERFPGIKDYMEKTKMFARHHGYVETIFGRRIHCPEIKAVNPQVRAFNER 834 Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + G+A +++++A + +LQ+ +L +I R Sbjct: 835 AAINAPIQGSAADIIRRAMIQMENALEKEKLSAKMLLQVHDELIFEVPKSESTKTAILVR 894 Query: 542 RVAN 545 +V Sbjct: 895 KVME 898 >gi|167764029|ref|ZP_02436156.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] gi|167698145|gb|EDS14724.1| hypothetical protein BACSTE_02412 [Bacteroides stercoris ATCC 43183] Length = 952 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 98/590 (16%), Positives = 188/590 (31%), Gaps = 111/590 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQS-AMPSDL 57 L ID ET +P+ AE L ++ D V + +++ + ++ Sbjct: 381 LSIDTETTGTEPME-------AE-----LVGMSFSDAENQAYYVPVPANRDEALKIVNEF 428 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E M V N ++ I+ + G+ + K + ++LA P + Sbjct: 429 RPLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAE 485 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E + K D PP D Y D + T +L Sbjct: 486 IYLHYQTIHIDELIGAKGKNQKNMRDLPPEDV------------YRYACEDADVTLKLKN 533 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L + E L + I G RID + + + E ++++++I Sbjct: 534 VLEKELKEHAAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIY 593 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L G + + LF I T + + S + L + Sbjct: 594 ALAGGETFNIGSPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILE 653 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 654 YRGLKKLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR------ 706 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I +G + AD + IE R++A ++ + I Sbjct: 707 ------------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMI 748 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF +G DI+ T AK + I+ V+ + R K + Y G A+ Sbjct: 749 DAFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVFGLAERMNVPRQEA 808 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 809 KELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 868 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A +Q +LQ+ +L +E Sbjct: 869 NAPIQGSAADIIKVAMSLIYQRLQSNNLKAKMILQVHDELNFSVPEAEKE 918 >gi|291615288|ref|YP_003525445.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] gi|291585400|gb|ADE13058.1| DNA polymerase I [Sideroxydans lithotrophicus ES-1] Length = 929 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 100/574 (17%), Positives = 184/574 (32%), Gaps = 98/574 (17%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET L + A QA A+ + P +L + L + Sbjct: 357 SLDTETTGLDGMTAQLVGISFSIEAHQAAYLPLAHHYPGAPDQLG----REHALQKLKHW 412 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL-ALNFS 119 L + N +++ +F + P + N L L S Sbjct: 413 LESPAHKKLGQNLKYDQHIFANHGIAFAGIAEDTLLQSYVLESHKPHEMGNLALRHLGLS 472 Query: 120 EHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 GK F + +++ Y D + T +L + L Sbjct: 473 TVSYADVVGKGAKQIGFDQVDLETATR----------------YAAEDADITLQLHQTLS 516 Query: 179 PLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 P E + + + G ID ++ + + + ++++ + Sbjct: 517 PQLQGRLDAVYRQIELPVREVLFKMERNGVLIDSAMLGRQSHELGLKLNEIEKQAFEAAG 576 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + + + S + +LA D L +L + Sbjct: 577 QPF-NLNSPKQLSEILFDKLQLPVKKKTPSGTPST-DEEVLQELALDYPLPKLLLEYRGM 634 Query: 290 LKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ + + TGR + QN+P + Sbjct: 635 AKLKSTYTDKLPQMVNAKTGRVHTSYA-QAVAVTGRLASSDPNLQNIPIRT--------- 684 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I G ++V AD + IE R++A ++G++ +KAFA Sbjct: 685 ---------------PEGRRIREAFITPAGSRIVSADYSQIELRIMAHLSGDEGLLKAFA 729 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 GEDI+ T A+ F+ +D VS EQR KV+ L Y A S + Sbjct: 730 AGEDIHRATAAEVFSVALDAVSSEQRRYAKVINFGLIYGMSAYGLAAQLNIETSAAKQYI 789 Query: 460 QQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKL 498 + + D + ++ LW+ + A+ + Sbjct: 790 DLYFARYPGVKRYMDSTREQAKAQGFVETWFGRRLWLPEINGANGMRRQAAERAAINAPM 849 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 GTA +L+K A A +Q W + + ++ Sbjct: 850 QGTAADLIKLAMIA-----VQDWLETEKLATKLI 878 >gi|302381367|ref|YP_003817190.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] gi|302191995|gb|ADK99566.1| DNA polymerase I [Brevundimonas subvibrioides ATCC 15264] Length = 994 Score = 269 bits (688), Expect = 9e-70, Method: Composition-based stats. Identities = 85/509 (16%), Positives = 157/509 (30%), Gaps = 88/509 (17%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D+ ++ + + L L D V+ V N ++ + + GI + GL Sbjct: 458 DQLDKPTVLARLKGLLEDPGVLKVVQNGKYDLAVMAR-RGIRVAPIDDTMLISYVLEGGL 516 Query: 106 PSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 + L+ + GKA F + Sbjct: 517 HGHGMDELSRLHLGHEPIPFKSVAGTGKAQ-KSFKHVELKPATC---------------- 559 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ L P ER + + + RG R+D + +L Sbjct: 560 YAAEDADVTLRLWRILKPRLATERLATVYETLERGMPAVLADMELRGIRVDPARLRRLSS 619 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +L+ ++ + + LF + + + + + Sbjct: 620 EFGLRMAELEAQAHEIAGRPF-NVGSPRQIGEILFGELNLPGGKKTASG-QWETGAATLE 677 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 LA+ L R+ + KL + L A+ T A+ TGR + Sbjct: 678 GLAETHALPRVLLDWRQLSKLKGTYTDALVAAMDPQTDRVHTSYQLAAATTGRLASSDPN 737 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + + +R IA +G L+ AD + IE Sbjct: 738 LQNIPIRTET------------------------GRQIRQAFIAKDGHVLISADYSQIEL 773 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R+LA I +AF G DI+ T ++ F P+ + E R K + + Y Sbjct: 774 RLLAHIGDIPELKRAFKAGIDIHTATASEMFGVPVADMDPETRRRAKAINFGIVYGISAF 833 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM----------------- 485 G A G ++ + + T+ D +AE L Sbjct: 834 GLANQLGIDQGEAGAYIKTYFERFPGIRTYMDATRAEVRSLGFVSTVFGRKIHIPAIASK 893 Query: 486 ----QDQYPEFAVKDKLIGTACELVKKAW 510 + A+ + G A +++++A Sbjct: 894 SGAERQFGERAAINAPIQGAAADIIRRAM 922 >gi|319792363|ref|YP_004154003.1| DNA polymerase i [Variovorax paradoxus EPS] gi|315594826|gb|ADU35892.1| DNA polymerase I [Variovorax paradoxus EPS] Length = 937 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 102/599 (17%), Positives = 189/599 (31%), Gaps = 112/599 (18%) Query: 6 IDIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQY 60 ID ET S + VGV E + + D P +L D + + L + Sbjct: 365 IDTETTSLDEMVAQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPID-----EVLAKLKPW 419 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS- 119 L + + + ++R +F GI++ T + + + A LA Sbjct: 420 LENPEKKKLGQHIKYDRHVFANH-GIEVEGYA-HDTMLQSYVLEVHKPHGLASLAERHLG 477 Query: 120 ----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + +G I F + I EY D + T ++ + Sbjct: 478 RSGISYEDLCGKGAHQI-SFSQVDIAKAA----------------EYSCEDSDQTLDVHR 520 Query: 176 RLIPLSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P + L + Q + G ID + + L+++ Sbjct: 521 TLWPQLEANEKLRFVYQLEMDSSEALYRVERNGVMIDSATLAAQSHELGTRIMALEQEAY 580 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++ + + F G+ +V + S + +LA+D L Sbjct: 581 EIAGQPF-NLGSPKQIGEIFFTKLGLPVVKKTPSGAPST-DEEVLEKLAEDYPLPAKILE 638 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + + GR+ + TGR S QN+P + Sbjct: 639 HRGLSKLKGTYTDKLGQLANPRTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPIRT----- 692 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR +A G + AD + IE R++A I+G++ + Sbjct: 693 -------------------PEGRRVREAFVAPAGSVIASADYSQIELRIMAHISGDESLL 733 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF G D++ T A+ F + D+VS EQR KV+ L Y AK Sbjct: 734 RAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSFGLAKNLGIETKAA 793 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAV 494 ++++ + D +A + + A+ Sbjct: 794 ASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEINSPNGPRRGGAERAAI 853 Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +L+K + + + ++Q+ +L E R+ Sbjct: 854 NAPMQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEVPEAEVEWVRAEIPRL 912 >gi|163857439|ref|YP_001631736.1| DNA polymerase I [Bordetella petrii DSM 12804] gi|163261167|emb|CAP43469.1| DNA polymerase I [Bordetella petrii] Length = 948 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 90/519 (17%), Positives = 174/519 (33%), Gaps = 88/519 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L+D + H++ ++ +F G+ + + T + A + L Sbjct: 426 ERMRAWLQDPARPKLLHHAKYDAHVFANE-GVALAGIQD-DTMLQAYVLESHRGVGLNDL 483 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 A + + G C +D + G Y D + T +L Sbjct: 484 AQRY------LGRGGITYEELCGKGAKQIGFDEVAV------EQAGHYACEDADFTLQLH 531 Query: 175 KRLIPLSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P + L + Q + G ++D + + + QE +L++ Sbjct: 532 HALRPRVAADAGLERIYQLEIQVSRVLTVVERNGVKVDAAELGRQSHRLGQEMLQLEQRA 591 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + L LF + +V + G S +T+LA+D L ++ Sbjct: 592 YELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTAGGAPST-DEEVLTRLAQDYPLPQVLL 649 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L +++ GR+ A TGR + QN+P + + Sbjct: 650 EYRGLSKLKSTYTDKLPRMINARTGRVHTHYS-QAAVVTGRLASSDPNLQNIPVRTEA-- 706 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR +A +G LV AD + IE R++A ++ + Sbjct: 707 ----------------------GRRVREAFVAEHG-VLVSADYSQIELRIMAHVSDDANL 743 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +AFA G+DI+ T ++ F +D+V +QR K + L Y G A Sbjct: 744 QQAFAAGKDIHRATASEIFGVALDEVGADQRRAAKAINFGLIYGMGVFGLASNLGITRDA 803 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ + + + + + + A Sbjct: 804 AQAYIDRYFARYPGVAQYMEHTRQLARQQGYVETVFGRRLQLPDIRAASGPRRQGAERAA 863 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 + + GTA +L+K A A +Q W D ++ Sbjct: 864 INAPMQGTAADLIKMAMVA-----VQDWLDAERLATRMI 897 >gi|224541516|ref|ZP_03682055.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] gi|224525553|gb|EEF94658.1| hypothetical protein CATMIT_00686 [Catenibacterium mitsuokai DSM 15897] Length = 867 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 99/534 (18%), Positives = 182/534 (34%), Gaps = 78/534 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 + Y ++ + E + L YL+DET ++ ++ + G++I Sbjct: 327 ILGYGIYNDEQAYFISYENALKDESFLAYLKDETKKKYGYDIK-SAVIGSRWNGVEIN-- 383 Query: 92 RWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + LA P+ LK C ++ + EE F KG+ P D Sbjct: 384 GYTFDLSLASYVLEPAIKEELKYVCTHFDYDG-VQYDEEV------FGKGAKKHIPDDAL 436 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A H + K V + K+ D E + + + G IDLD++ + Sbjct: 437 LAQHTVSKAKAIYELKDVVTKELKDKKQYELYEDIELPVTRILGEMEFAGTEIDLDVLKE 496 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 + E + +KL DI +++ + L LF G+ ++ T + +L Sbjct: 497 MDEAFDETIEKLSNDIYRISGTTF-NISSPKQLGQVLFEDLGLKGGKKTKTGYSTSQDVL 555 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 L+L + + L L E V D ++ + + TGR S Sbjct: 556 EKIIDAHPVVPLVLEYRMLTKLSSTYLKGLQEQVFPDNKIHTIYK-QTLTHTGRLSSVDP 614 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R ++ NG LV D + IE Sbjct: 615 NLQNIPVRS------------------------EEGKLIRKAFVSHNGY-LVSFDYSQIE 649 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444 R+LA +A I AF G+DI+ T A F ++V+ + R+ K + + Y Sbjct: 650 LRILAHMAHVTNLIDAFNQGKDIHRHTAALVFGVKDEEVTPQMRSQAKAVNFGIIYGMSE 709 Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 +K + + ++ + T+ D Sbjct: 710 FRLSKDIGMSIAEARNFINKYFETYPEVKTYMDEVVEVCKKQGYVSTLLNRKRYIPTIND 769 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + ++ Q +A+ + GT +++K A K Q +LQ+ +L Sbjct: 770 KNFMVRQQAQRYAMNTPIQGTGADILKLAMIEVDKALKVHHLKSQMILQVHDEL 823 >gi|15677811|ref|NP_274975.1| DNA polymerase I [Neisseria meningitidis MC58] gi|7227243|gb|AAF42310.1| DNA polymerase I [Neisseria meningitidis MC58] Length = 938 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 105/551 (19%), Positives = 191/551 (34%), Gaps = 85/551 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 + ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 TIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 408 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F I ++LA +GL L Sbjct: 409 PHLGNPALKKIGQNLKYDQHVFANY---GIALNGIAGDAMLASYIIESHLGHGLD-ELSE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I + Y A+ + + D E Sbjct: 465 RWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMD-EKQL 522 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 576 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNRSLA 635 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 636 KLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 684 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 685 --------------EEGRKVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F T + VS EQR K + L Y G AK + Sbjct: 731 GEDVHRRTAAEVFGTAPENVSSEQRRYAKSINFGLIYGMGQYGLAKSLGIDNLSAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 791 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNANARAGAERAAINAPMQ 850 Query: 500 GTACELVKKAW 510 GTA +L+K+A Sbjct: 851 GTASDLIKRAM 861 >gi|307726557|ref|YP_003909770.1| DNA polymerase I [Burkholderia sp. CCGE1003] gi|307587082|gb|ADN60479.1| DNA polymerase I [Burkholderia sp. CCGE1003] Length = 913 Score = 269 bits (688), Expect = 1e-69, Method: Composition-based stats. Identities = 110/575 (19%), Positives = 192/575 (33%), Gaps = 99/575 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E A A+ D PV+L + + + L + Sbjct: 339 SFDTETTSLDPMTAQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLP----REEVLAKLKPW 394 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + GI++ T + + LAL Sbjct: 395 LESAQQKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNLALRHLG 452 Query: 120 EHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 K E+ G +A + D T H + E T Sbjct: 453 VKTIKYEDVAGKGAQQIGFDEVALEKAAEYAAEDADITLRLHQTMYPQLA------AEKT 506 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E R D E + + + G ID + + + IA +L+ +L G Sbjct: 507 LENVYR-----DIEVPTSRVLRKMERTGVLIDAEKLRQQSNEIATRLIELESKAYELAGG 561 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + F + +V + S + +LA+D L ++ + Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKILLEHRGLS 619 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L V++ GR+ + TGR + QN+P + Sbjct: 620 KLKSTYTDKLPRMVNASTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 668 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G KLV AD + IE R++A I+G++ ++AF+ Sbjct: 669 --------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRAFSQ 714 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GEDI+ T A+ F+ +VS +QR + KV+ L Y A L + Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774 Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDKLI 499 ++ + + D E LW+ + A+ + Sbjct: 775 RYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524 GTA +L+K + A + ++Q+ +L Sbjct: 835 GTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDEL 869 >gi|261378116|ref|ZP_05982689.1| DNA polymerase I [Neisseria cinerea ATCC 14685] gi|269145571|gb|EEZ71989.1| DNA polymerase I [Neisseria cinerea ATCC 14685] Length = 930 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 108/566 (19%), Positives = 195/566 (34%), Gaps = 90/566 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 K+ ID ET S L + + A +AV ++ P +L D + L Sbjct: 352 KIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QDVLGRLK 407 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLKN 111 +L + + + N +++ +F DI S+LA +GL L Sbjct: 408 PHLENPALKKIGQNLKYDQHVFANY---DIALNGIAGDSMLASYIIESHLGHGLD-ELSE 463 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + +G I+ + Y A+ + + D Sbjct: 464 RWLGLETITYESLCGKGAKQISFADVAIGQATEYTAQDADFALRLEAHL-RAQMDA-KQL 521 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 522 EMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAAGQP 575 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAIL 290 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 576 F-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYALPKIILQNRSLA 634 Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L E + DGR+ T + TGR + QN+P + Sbjct: 635 KLKSTYTDKLPEMIFPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT---------- 683 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR A G +V AD + IE R++A ++G+ I AF N Sbjct: 684 --------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAAFQN 729 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 730 GEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKTFID 789 Query: 461 QFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLI 499 ++ + + + ++ + + A+ + Sbjct: 790 RYFARYPGVAEYMQRTKEQAAAQGYVETLFGRRLYLPDIRNKNTNARAGAERAAINAPMQ 849 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLT 525 GTA +L+K+A + W DL Sbjct: 850 GTASDLIKRAMID-----VSRWLDLD 870 >gi|241758960|ref|ZP_04757072.1| DNA polymerase I [Neisseria flavescens SK114] gi|241320781|gb|EER57014.1| DNA polymerase I [Neisseria flavescens SK114] Length = 935 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 107/597 (17%), Positives = 202/597 (33%), Gaps = 96/597 (16%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 K+ ID ET S L + + A +AV ++ P + D + L Sbjct: 352 KIGIDTETTSLDAMNAALVGISIAFQAGEAVYIPVGHSLTAAP-EQIDL---QDVLGRLK 407 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIP---SKRWICTSVLART-------NGLPSS 108 +L + + + N +++ +F GI + ++LA +GL Sbjct: 408 PHLENSALKKIGQNLKYDQHVFANY-GIALNGIALNGIAGDAMLASYIIESHLGHGLD-E 465 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L L L + + +G I + Y A+ + + D Sbjct: 466 LSERWLGLETITYESLCGKGAKQIGFADVAIGQATEYAAQDADFALRLEAHL-RAQMDA- 523 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 524 KQLEMYEKM------ELPVAQVLFEMERNGVQIDRAELARQSAELGAELMKLEQEAYAAA 577 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGS 287 + L+ LF GI + + I + + + QLA D L ++ Sbjct: 578 GQPF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEAVLEQLAPDYPLPKIILQNR 636 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL + L E +S DGR+ T + TGR + QN+P + Sbjct: 637 SLAKLKSTYTDKLPEMISPKDGRVHTTYA-QAVAITGRLASNNPNLQNIPIRT------- 688 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 VR A G +V AD + IE R++A ++G+ I A Sbjct: 689 -----------------AEGRRVRRAFTAPQGSVIVSADYSQIELRIMAHLSGDKTLIAA 731 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F NGED++ T A+ F + VS EQR K + L Y G AK Sbjct: 732 FQNGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNISAKN 791 Query: 458 DLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKD 496 + ++ + + + ++ + + A+ Sbjct: 792 FIDRYFARYPGVAEYMQRTKEQAAAQGFVETLFGRRLYLPDIHNKNANARAGAERAAINA 851 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + GTA +L+K+A K + ++Q+ +L + ++ Sbjct: 852 PMQGTASDLIKRAMIDVSCWLDSDGLKTKLIMQVHDELVLEVPEAELDLVKEKLPQI 908 >gi|119899889|ref|YP_935102.1| DNA polymerase I [Azoarcus sp. BH72] gi|119672302|emb|CAL96216.1| DNA polymerase I [Azoarcus sp. BH72] Length = 918 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 114/592 (19%), Positives = 197/592 (33%), Gaps = 99/592 (16%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VG+ +A A+ +A A+ D P +L + + L +L Sbjct: 346 DTETTSLDPMSARLVGMSFALAQGEAAYLPLAHRGTDVPQQLP----LDEVLARLKPWLE 401 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEH 121 + + N ++ + GI + T + + LA Sbjct: 402 SDRHAKLGQNLKYDAHVLLNH-GIRLGGI-THDTLLESYVLESDKPHDMDSLAKRHLGLT 459 Query: 122 LTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 E G +A C + + D T H W VEA Sbjct: 460 TIPYTEVCGKGAKQIGFDEVALDCAAAYAAEDADVTLRLHETLWPQ--------VEALPR 511 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L D E + + G ID L+ + E + + L+ + L Sbjct: 512 LAALYR---DVELPTLQVLFEMERTGVLIDPFLLAQHGEELGRRLLGLEAEAHVLAGQPF 568 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L LF + ++ + T + +TQLA+D L +L ++ KL Sbjct: 569 -NLGSPKQLGEILFGKLALPVLKKT-ATGQPSTDEDVLTQLAEDYPLPKLLLEHRSLAKL 626 Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L V+ GR+ A TGR + QN+P + Sbjct: 627 KSTYADKLPRMVNPKTGRVHTCFSQATAV-TGRLASTDPNLQNIPIRT------------ 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R+ IA +V AD + IE R++A ++G+ ++AFA GE Sbjct: 674 ------------AEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSGDARLLEAFAEGE 721 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--------------GGAKVFKTMA 452 D++ T A+ F +VS EQR KV+ L Y G A+ + Sbjct: 722 DVHRATAAEVFGVAPSEVSSEQRRYAKVINFGLIYGMSAHGLAKNLGIERGAAQAWIDRY 781 Query: 453 SHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + +K+ + + + + + A+ + GT Sbjct: 782 FARYPGVADYMERIKAEAKDKGYVETVFGRRLHLPDIRAQQAGRRQAAERAAINAPMQGT 841 Query: 502 ACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 A +L+KKA A K + VLQ+ +L E + + Sbjct: 842 AADLIKKAMIAVSGWLRASGLKSRLVLQVHDELVLEVPVAEVETLRAALPGL 893 >gi|56477692|ref|YP_159281.1| DNA polymerase I [Aromatoleum aromaticum EbN1] gi|56313735|emb|CAI08380.1| DNA polymerase I [Aromatoleum aromaticum EbN1] Length = 908 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 107/593 (18%), Positives = 194/593 (32%), Gaps = 101/593 (17%) Query: 7 DIETRSPQPLPK--VGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + VG+ +A E +A A+ + P +L E + + L +L Sbjct: 336 DTETTSLDQMAAKLVGMSFAIVEGEAAYLPLAHIYPAAPAQL-PLAE---VLAKLKPWLE 391 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + + N ++ + G+ + T + + LA HL Sbjct: 392 SDAHPKLGQNLKYDAHVLANH-GLRLGGIA-HDTLLQSYVLESDRPHDMDSLAKR---HL 446 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 + C + A + EY D + T L ++L P Sbjct: 447 GIDTIPYTAV---CGKGVGQI------CFDQVAIERATEYAAEDADITLRLHRKLWPQLE 497 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E + + G ID L+ + E + + L+ + L Sbjct: 498 AAPALAALYRDIEMPAMAVLFDMERTGVLIDAFLLAQQSEELGRRLMTLEREAHDLAGQP 557 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF G+ +V + T + + QLA D L +L + K Sbjct: 558 F-NLGSPKQLGEILFGKLGLPVVKKT-ATGQPSTDEEVLAQLADDYPLPKLLLEHRGLSK 615 Query: 292 L-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L V+ GR+ + + TGR + QN+P + Sbjct: 616 LKSTYTDKLPRMVNAKTGRVHTSFS-QAVAVTGRLASSEPNLQNIPIRT----------- 663 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R+ IA +V AD + IE R++A ++ + +++FA G Sbjct: 664 -------------AEGRRIRAAFIAPRDHVIVSADYSQIELRIMAHLSSDARLLQSFAEG 710 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 ED++ T A+ F +V+ EQR KV+ L Y AK + + + Sbjct: 711 EDVHRATAAEIFGMTPGEVTSEQRRYAKVINFGLIYGMSAHGLAKNLGLERAAAAAYIDR 770 Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500 + + + + ++E+ + A+ + G Sbjct: 771 YFARYPGVAAYMERTRSEARARGYVETVYGRRLYLPEIRASQAGRRQAAERAAINAPMQG 830 Query: 501 TACELVKKAWRAK----------HQGVLQLWKDLTEGFACVVQEGGSISARRV 543 TA +L+KKA A + VLQ+ +L E + + Sbjct: 831 TAADLIKKAMIATRRWLADAALRSRLVLQVHDELVLEVPRDELETVRATLPGL 883 Score = 41.6 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 Q + D++ + M +VL VHDE+V E P +V TL LMT Sbjct: 829 QGTAADLIKKAMIATRRWLADAALRSRLVLQVHDELVLEVPRDELETVRATLPGLMT 885 >gi|261401773|ref|ZP_05987898.1| DNA polymerase I [Neisseria lactamica ATCC 23970] gi|269208086|gb|EEZ74541.1| DNA polymerase I [Neisseria lactamica ATCC 23970] Length = 939 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 108/570 (18%), Positives = 195/570 (34%), Gaps = 89/570 (15%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 K+ ID ET S L + + A +AV ++ P +L D + L Sbjct: 353 EKIGIDTETTSLDAMNASLVGISIAFQAGEAVYIPVGHSLTAAPEQL-DL---QYVLDRL 408 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110 +L + + + N +++ +F I + ++LA +GL L Sbjct: 409 KPHLENSALKKIGQNLKYDQHVFANY---GIALNGIVGDAMLASYIIESHLGHGLD-ELS 464 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + + +G I + Y A+ + D Sbjct: 465 GRWLGLETITYESLCGKGAKQIGFADVAIGPATEYAAQDADFALRLEAHLRAQMDD--KQ 522 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E+++++ E + + + G +ID + + + E KL+++ Sbjct: 523 LEMYEKM------ELPVAQVLFEMERVGVQIDRAELARQSAELGAELVKLEQEAYAAAGQ 576 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GI + + I + + QLA D L ++ ++ Sbjct: 577 PF-NLNSPKQLQEILFDKMGIPTKGLKKTAKGGISTNEDVLEQLAPDYPLPKIILKNRSL 635 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E +S D R+ T + TGR +G QN+P + Sbjct: 636 AKLKSTYTDKLPEMISPRDKRVHTTYA-QAVAITGRLAGNNPNLQNIPIRT--------- 685 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR A G +V AD + IE R++A ++G+ I AF Sbjct: 686 ---------------EEGRKVRRAFTAPPGSVIVSADYSQIELRIMAHLSGDKTLIAAFQ 730 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 731 NGEDVHRRTAAEVFGIAPENVSSEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 790 Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498 ++ + + + + + ++ + A+ + Sbjct: 791 DRYFARYPGVAEYMQRARECAAGQGYVETLFGRRLYLPDIRHTNANIRARAERAAINAPM 850 Query: 499 IGTACELVKKAW----RAKHQGVLQLWKDL 524 GTA +L+K+A R + W DL Sbjct: 851 QGTASDLIKRAMIDVSRWLSECEASPWDDL 880 >gi|124266340|ref|YP_001020344.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] gi|124259115|gb|ABM94109.1| DNA-directed DNA polymerase [Methylibium petroleiphilum PM1] Length = 937 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 108/558 (19%), Positives = 183/558 (32%), Gaps = 99/558 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S + VG+ + A+ + P +L ++L Sbjct: 363 ALDTETDSLDGMRARIVGLSFSVQPYEACYIPLAHTYPGAPDQLP--------LDEVLAA 414 Query: 61 LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L+ D + + N ++ +F GI + T + + LA Sbjct: 415 LKSWLEDGSRAKLGQNVKYDTHVFANH-GIAVRGY-VHDTLLQSYVLEAHKPHSLESLA- 471 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 S HL + +A I + TRA EY D + T ++ + Sbjct: 472 --SRHLDRKGLSYEDVAGKGAQQIPFAQVELTRAT---------EYSGEDSDMTLDVHRV 520 Query: 177 LIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P + E ++ I G ID L+ + +AQ L+++ Sbjct: 521 LWPQLEAAPRLREVYERIEMPTSVILGRIERHGVLIDSALLARQSADLAQRMVALEQEAH 580 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + + LF GI + S + +LA D L Sbjct: 581 ALAGQPF-NLGSPKQIGEILFNKLGIPAKKKTASGAPST-DEEVLAELAADYPLPAKLLE 638 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ KL + L V++ GR+ + TGR + QN+P + Sbjct: 639 HRSLAKLKGTYTDKLPLMVNAATGRVHTNYA-QAVAVTGRLASNDPNLQNIPIRT----- 692 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR IA G ++ AD + IE R++A I+ + + Sbjct: 693 -------------------PEGRRVREAFIAPPGHVILSADYSQIELRIMAHISEDPGLL 733 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 KAFA G D++ T ++ FN P+ +VS EQR KV+ L Y G A Sbjct: 734 KAFAEGLDVHRATASEVFNVPVAEVSSEQRRYAKVINFGLIYGMGAFGLASNLGIEQKAA 793 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAV 494 + ++ + D +A + L + A+ Sbjct: 794 KDYIDRYFARFAGVKRYMDETRARAKELGYVETLFGRRIYLPEINGGNGPRRTGAERQAI 853 Query: 495 KDKLIGTACELVKKAWRA 512 + GTA +L+K A A Sbjct: 854 NAPMQGTAADLIKLAMIA 871 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 16/95 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 RR+ ++ G T R+ +Q + D++ M Sbjct: 829 GRRIYLPEINGGNGPRRTGA---ERQAINAP------MQGTAADLIKLAMIAVQAALDAQ 879 Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMT 652 +V+ VHDE+V E P+ ++ + LM Sbjct: 880 QRATCMVMQVHDELVFEVPEAELDWARTAVPELMA 914 >gi|269140843|ref|YP_003297544.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|267986504|gb|ACY86333.1| DNA polymerase I [Edwardsiella tarda EIB202] gi|304560602|gb|ADM43266.1| DNA polymerase I [Edwardsiella tarda FL6-60] Length = 930 Score = 268 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 105/576 (18%), Positives = 199/576 (34%), Gaps = 103/576 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQA----VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L V A A+ + D P +L ++ + + L L Sbjct: 356 DTETDSLDVLSANLVGISCADAPGQACYIPLAHDYLDAPRQL----DRQYVLARLQPLLE 411 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 DE V + N ++ + + GI + + T + + + LA +H Sbjct: 412 DEGVAKIGQNLKYDIGVMARY-GITLRGVAF-DTMLESYVLNSVAGRHDMDSLAARHLDH 469 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 T E A + + + + P + EY D + T +L +RL P Sbjct: 470 KTITFEEIAGKGK-GQLTFNQIP-----------LEQAAEYAAEDADVTLQLHQRLWPTL 517 Query: 182 DGE-----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +GE L + + G ID ++ + + +A + L++ Sbjct: 518 EGESGPSHIFRDIDMPLIPVLSRMERTGVLIDSAILGQHSQELAVRLEALEQQAHSEAGE 577 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAI 289 S T L+ LF + ++ + G S + + +LA L ++ + Sbjct: 578 PFNLS-STKQLQAILFEKQQLPVLKKTPGGAPST-NEEVLAELADQGYALPQVILEYRTL 635 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + V+ GR+ + + TGR S QN+P + Sbjct: 636 AKLKSTYTDKLPQMVNPLTGRVHTSY-HQAVTATGRLSSSDPNLQNIPVRS--------- 685 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA G ++V AD + IE R++A ++G+ + AFA Sbjct: 686 ---------------DEGRRIRQAFIAPAGSRIVAADYSQIELRIMAHLSGDKGLLAAFA 730 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 G+DI+ T A+ F P++ VS +QR K + L Y A+ + Sbjct: 731 AGKDIHRATAAEVFGLPLEAVSADQRRSAKAINFGLIYGMSAFGLARQLNIGRGEAQRYM 790 Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498 + + + + + + + + A+ + Sbjct: 791 DLYFERYPGVLAYMERTRQLASDQGYVETLDGRRLYLPEINARNGMRRKAAERAAINAPM 850 Query: 499 IGTACELVKKAWRAKH----------QGVLQLWKDL 524 GTA +++K+A A + ++Q+ +L Sbjct: 851 QGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVHDEL 886 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 Q + DI+ M + +++ VHDE+V E P++ +V + +LM Sbjct: 851 QGTAADIIKRAMIAVDGWLQEAQPEVRMIMQVHDELVFEVPESQVEAVVCQVRALM 906 >gi|256838291|ref|ZP_05543801.1| DNA polymerase I [Parabacteroides sp. D13] gi|256739210|gb|EEU52534.1| DNA polymerase I [Parabacteroides sp. D13] Length = 925 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 81/534 (15%), Positives = 166/534 (31%), Gaps = 95/534 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L++ + + N F+ ++ +K ++ + +++A P + Sbjct: 399 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 455 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +EE + + S+ + P + EY D + T + Sbjct: 456 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADVTLK 503 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P + E L + + G +D + + + KL++ Sbjct: 504 LKNYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALKQSSGELTASMNKLEQ 563 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ +L + T + LF +D T S + +L + Sbjct: 564 EVYELAGAEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGK 622 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L E ++ G++ + + TGR S QN+P Sbjct: 623 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 676 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395 +R I N AD + IE R++A ++G+ Sbjct: 677 -------------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGD 717 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF +G DI+ T AK + P+++V+ + R K + Y G A+ Sbjct: 718 PHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 777 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 S + + + + SH+ ++ Sbjct: 778 RSESKELIDGYFSTYPRIKEYMEESVKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 837 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 A+ + G+A +++K A K + +LQ+ +L E Sbjct: 838 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE 891 >gi|150398570|ref|YP_001329037.1| DNA polymerase I [Sinorhizobium medicae WSM419] gi|150030085|gb|ABR62202.1| DNA polymerase I [Sinorhizobium medicae WSM419] Length = 1004 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 100/529 (18%), Positives = 183/529 (34%), Gaps = 89/529 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNAC 113 S L + L D +++ VA N + ++ K+ G+ + T +++ + Sbjct: 476 SRLKELLEDPSILKVAQNLKYGYLVMKRH-GVTMQGFD--DTMLISYVLDAGNGAHGMES 532 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 LA + H +G R +ID D A Y D + L Sbjct: 533 LAERWLGHTPIASKGITGSGR-SSLTIDFVDIDKAAA-----------YSAEDADIALRL 580 Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L P ER L + + +RG +D ++ +L +AQ L+++ Sbjct: 581 WHVLKPRLTARGLTRVYERLERPLISVLAGMEERGIPVDRQILSRLSGELAQGAAALEDE 640 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRL 282 I +L L LF G+ ++ T + S + LA L R Sbjct: 641 IYRLAGETFTI-GSPKQLGDILFGKLGLPGGSKTK-TGQWSTSAQVLEDLAAAGHDLPRK 698 Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L V + + T A+ TGR S QN+P + Sbjct: 699 IVDWRQLTKLKSTYTDALPGFVHPETKRVHTCFALAATTTGRLSSSDPNLQNIPIRT--- 755 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R+ +A+ G KLV AD + IE RVLA +A Sbjct: 756 ---------------------GEGRKIRTAFVATPGHKLVSADYSQIELRVLAHVADIPQ 794 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AFA+G DI+ T ++ F P+D + E R K + + Y G A S Sbjct: 795 LRQAFADGVDIHAMTASEMFGVPVDGMPGEIRRRAKAINFGIIYGISAFGLANQLSIERS 854 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 G ++++ + + + + S + M+ Sbjct: 855 EAGDYIKRYFERFPGIRDYMENTKTFARENGYVETIFGRRAHYPDIRSSNPSMRAFNERA 914 Query: 493 AVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEG 535 ++ + G+A +++++A + ++ + + V+EG Sbjct: 915 SINAPIQGSAADIIRRAMVKMEPALEAAKLSARMLLQVHDELIFEVEEG 963 >gi|289207231|ref|YP_003459297.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] gi|288942862|gb|ADC70561.1| DNA polymerase I [Thioalkalivibrio sp. K90mix] Length = 911 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 104/603 (17%), Positives = 199/603 (33%), Gaps = 122/603 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP-----SD 56 D ET S A +A I ++A++ +P Sbjct: 338 DTETTSLD----------AMRAEIVGMSFAFEPGTAWYLPLAHTGPDADPQLPRAETLER 387 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNA 112 L +L E + H+ ++R + I + + ++L + L + Sbjct: 388 LKPWLESERHGKLGHHLKYDRNVLGNH---GITLRGIVDDTLLESFCLDAGANRHDLDSL 444 Query: 113 CL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L++ + GK + I D A Y D + Sbjct: 445 AERHLDYKTTHYEDVAGKGVKQ------IPFAEVDIGIATD---------YAGEDADICL 489 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L P + E L + I G ++D D + + + + E +++ Sbjct: 490 QLDAVFQPRLQAAEGPAFVYREIEMPLVPVLADIERVGVKVDPDRLGEQSQELLAEMERI 549 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + + + G + ++ LF G+ ++ + S + + Q+A D L Sbjct: 550 EREAFEEAGGEF-NLGSPKQIQEILFERLGLPVLRRTPKGQPST-AEDVLEQMADDYALP 607 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 RL + KL TL + GR+ + GA+ TGR S QN+P + Sbjct: 608 RLILEHRGLSKLRSTYTETLPRRIHPETGRVHTSYHQAGAA-TGRLSSSEPNLQNIPVRT 666 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + +R IA G +L+ AD + IE R++A ++ Sbjct: 667 EA------------------------GRRIRRAFIAEEGHQLLAADYSQIELRIMAHLSQ 702 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + +KAFA G+DI+ T A+ F ++VS +QR K + L Y A+ Sbjct: 703 DAGLLKAFAEGQDIHRATAAEVFGLDPEQVSGDQRRAAKAINFGLIYGMSAWGLARNLGI 762 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489 + ++ + + + S + + Q Sbjct: 763 EQGEAREYIDRYFSRYPGVHDYMERARASGRENGYVETLFGRRLYLPEINSRNGARRQQS 822 Query: 490 PEFAVKDKLIGTACELVKKAW-RAKH---------QGVLQLWKDLTEGFACVVQEGGSIS 539 A+ + GTA +++K+A R H + ++Q+ +L A E + Sbjct: 823 ERVAINAPMQGTAADIIKRAMVRVAHDLEDTGIDARMIMQVHDELVFEVADAAVEDLTTL 882 Query: 540 ARR 542 R+ Sbjct: 883 VRK 885 >gi|308272139|emb|CBX28746.1| DNA polymerase I [uncultured Desulfobacterium sp.] Length = 912 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 103/561 (18%), Positives = 186/561 (33%), Gaps = 90/561 (16%) Query: 2 SKLFIDIETRSPQPLP----KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 + +D ET S PL + V A +A A+ ++ P +L D E M + Sbjct: 334 NHFALDTETTSENPLKAKLVGISVSLKANEAFYIPLAHKYEGVPKQL-DMNETLNMLKGV 392 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116 + + + + N ++ I+ K+ GIDI + T + + + +AL Sbjct: 393 FE---NPDIKKIGQNIKYDWIVLKRH-GIDIAGV-YSDTMIASYLINPSKRAHNLDQIAL 447 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +F H E + G + P Y D + T Sbjct: 448 DFLGHKKITFEETVGKKKPESGFSNVPLEKA------------VSYACEDADITLMAHDV 495 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + +G +D + + +L + Q+ + L+E+I Sbjct: 496 LFPKLLEIGLKDLFENIEMPLIPVLMKMEIKGICVDRNRLSELSKHFEQQIEDLEENIYS 555 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + + L LF + + ++ +T+LA++ L L Sbjct: 556 VAGMTF-NIKSPQQLGEVLFEKLMLPVKKKTKKKTGYSTDVDVLTELAQNHELPALVLRH 614 Query: 287 SAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L E + R+ + + TGR S QN+P Sbjct: 615 RTLSKLKSTYTDALLEIADPETERIHTSFN-QTVTATGRLSSSNPNLQNIP--------- 664 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +RS + G KL+ AD + IE R+LA A ++ I Sbjct: 665 ---------------VKTDEGREIRSAFVPKKGWKLLSADYSQIELRLLAHCAEDEILIN 709 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456 AF EDI+ T + F + ++ E R K + ++ Y A K Sbjct: 710 AFLEDEDIHTRTAIEIFQIFPEFITPELRYQAKTINFSIMYGISAFSLSKDLGISQKMAQ 769 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 + + K F D +++H + + AV Sbjct: 770 TYINNYFARYKEVKRFIDKTISDAHVNKKTSTLLGRIRLLPDIDSSNKIVIAAAERIAVN 829 Query: 496 DKLIGTACELVKKAWRAKHQG 516 + GTA +L+K A + Sbjct: 830 TPIQGTAADLIKIAMINIDKA 850 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 +Q + D++ M N K ++L+VHDE+V E P V L M Sbjct: 828 VNTPIQGTAADLIKIAMINIDKAFTEKKLKAAMLLSVHDELVFEVPPDELDMVSDLVKNM 887 Query: 652 TKNPSWAKGLPLK 664 +N W +PLK Sbjct: 888 MENV-WTLKVPLK 899 >gi|319403494|emb|CBI77073.1| DNA polymerase I [Bartonella rochalimae ATCC BAA-1498] Length = 968 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 92/536 (17%), Positives = 186/536 (34%), Gaps = 83/536 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L ++ V+ + N ++ ++ K+ I + S A G+ + + Sbjct: 442 LKPILENQAVLKIGQNIKYDWLVMKQY-NIVMCSFDDTMLLSYALEAGISTHGMDVLSKR 500 Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEATR 171 ++ I F + + Y A+ ++ WQ+ + Sbjct: 501 WLGHKPISYKDLTHSGRKIVSFAQVDLKQATLYAAEDADITLRLWQVLKPQLV--AQKMT 558 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++++RL +R L + + +RG +D ++ +L +AQ L+E+I +L Sbjct: 559 KIYERL------DRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQLVGEK 612 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290 + L LF G+ ++ + S + +LA + IL R + Sbjct: 613 FNIA-SPKQLGDILFGKMGLLGGAKTKSG-QWSTSAQTLEELAAEGHILPRKIIDWRQLT 670 Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + + GR+ + TGR S QN+P + Sbjct: 671 KLKSTYTDALPSYILPTTGRVHTNYSLAT-TLTGRLSSSEPNLQNIPVRT---------- 719 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R +AS G L+ AD + IE R+LA +A +AF Sbjct: 720 --------------AEGRKIRKAFVASKGYLLLSADYSQIELRILAHVADITALKEAFTK 765 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G+DI+ T ++ F ++ ++ E R K + + Y G A +Q Sbjct: 766 GQDIHTMTASQMFGVAVEGMTSEIRRRAKAINFGIIYGISPFGLASQLGISRKEASDYIQ 825 Query: 461 QFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------------AVKDKLI 499 + + + + + + H + YPE A+ + Sbjct: 826 LYFERFPGIEDYMERTKIFARHHGYVETIFGRRIHYPEIKTAKSQIRAFNERAAINAPIQ 885 Query: 500 GTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 G+A +++++A R + +LQ+ +L +I ++V Sbjct: 886 GSAADIIRRAMIQMENALEKERLSAKMLLQVHDELIFEVPKSESTKTAILIKKVME 941 >gi|209517786|ref|ZP_03266621.1| DNA polymerase I [Burkholderia sp. H160] gi|209501732|gb|EEA01753.1| DNA polymerase I [Burkholderia sp. H160] Length = 913 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 108/580 (18%), Positives = 196/580 (33%), Gaps = 109/580 (18%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E +A A+ D PV+L + + + L + Sbjct: 339 SFDTETTSLDPMIAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLAKLKPW 394 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + GI++ T + + + LAL Sbjct: 395 LESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSLALRHLG 452 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E K E+ GK F + ++D T L + Sbjct: 453 EKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDAD----------------ITLRLHQA 496 Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P + E + + + G ID + + + IA +L+ + Sbjct: 497 LYPQIAAEKTLDHVYREIEVPTSRVLRKMERTGVLIDAEKLRQQSSEIATRLIQLEGEAY 556 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L G + + F G+ ++ + S + +LA+D L ++ Sbjct: 557 ELAGGEF-NLGSPKQIGQIFFEKLGLPVIKKTPSGAPST-DEEVLQKLAEDYPLPKVLLE 614 Query: 286 GSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 615 HRGLSKLKSTYTDKLPRMVNRQTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 668 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G KLV AD + IE R++A I+G++ + Sbjct: 669 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLM 709 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF+ GEDI+ T ++ FN +VS +QR + KV+ L Y A Sbjct: 710 RAFSQGEDIHRATASEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAA 769 Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAV 494 + + ++ + + D E LW+ + A+ Sbjct: 770 KMYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 829 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA +L+K + A + ++Q+ +L Sbjct: 830 NAPMQGTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDEL 869 >gi|49474837|ref|YP_032878.1| DNA polymerase I [Bartonella henselae str. Houston-1] gi|49237642|emb|CAF26822.1| DNA polymerase I [Bartonella henselae str. Houston-1] Length = 968 Score = 268 bits (685), Expect = 2e-69, Method: Composition-based stats. Identities = 88/493 (17%), Positives = 174/493 (35%), Gaps = 73/493 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL----PSSLKNA 112 L L D+ V+ + N ++ ++ K+ GI I A G ++L Sbjct: 442 LKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIHCFDDTMLLSYALEAGTLTHNMNALSER 500 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171 L + GK + + + Y A+ ++ WQ+ + Sbjct: 501 WLGHKPIAYKDLTHNGKKITSFAEVDLKQATLYAAEDADITLRLWQVLKPQLV--AQGMT 558 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +++RL +R L + + +RG +D ++L+L +AQ L+E+I +L+ Sbjct: 559 RIYERL------DRPLIEVLARMEERGILVDRQILLRLSGELAQAAFILEEEIYQLSGEK 612 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290 + L LF G+ ++G + S + +LA + IL R + Sbjct: 613 FNLA-SPKQLGDILFGKMGLPGGAKTKGG-QWSTSAQTLEELAAEGHILPRKIIDWRQLA 670 Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + GR+ + TGR S QN+P + Sbjct: 671 KLKSTYTDALPSYILPKTGRVHTNYSL-AITSTGRLSSSEPNLQNIPVRT---------- 719 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R+ +A L+ AD + IE R+LA IA +AF+ Sbjct: 720 --------------AEGRKIRTAFVAPKRHVLLSADYSQIELRILAHIANITALKEAFSR 765 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G+DI+ T ++ F I+ + + R K + + Y G A G +Q Sbjct: 766 GQDIHAITASQIFGVAIEGMPSDIRRRAKAINFGIIYGISAFGLANQLGLSRQEAGRYIQ 825 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + + + + + + ++ ++ A+ + Sbjct: 826 LYFERFPGIKDYIETTKTFARQNGYVETIFGRRIHYPEIKAASPQVRSFNERAAINAPIQ 885 Query: 500 GTACELVKKAWRA 512 G+A +++++A Sbjct: 886 GSAADIIRRAMIQ 898 Score = 41.6 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP-DTPYFSVGTLCSLM 651 +Q + DI+ M ++L VHDE+V E P + ++ + +M Sbjct: 884 IQGSAADIIRRAMIQMEDALEKEKLSAKMLLQVHDELVFEVPEEESKKTMAVVKKVM 940 >gi|294777402|ref|ZP_06742853.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] gi|294448470|gb|EFG17019.1| DNA-directed DNA polymerase [Bacteroides vulgatus PC510] Length = 971 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 95/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%) Query: 5 FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 +D ET P+ VG+ ++YAE + PV DR E + ++ Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRAEAQKIVNEFRPAF 452 Query: 62 RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115 E V+ V N ++ ++ D ++ L + + Sbjct: 453 EKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ E + +G+ + +I + L E D E Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + + G R+D + + + E +++E++ +L + Sbjct: 566 KLF--YEIEMPLVPVLTYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 + LF I T + + S + L + + KL Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682 Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ G++ + + TGR S QN+P + Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIH 777 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T AK + IDKV++EQR+ K + Y G A+ + + + Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837 Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + D S + ++ A+ + G+A + Sbjct: 838 YPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 ++K A +Q +LQ+ +L +E Sbjct: 898 IIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938 >gi|167644193|ref|YP_001681856.1| DNA polymerase I [Caulobacter sp. K31] gi|167346623|gb|ABZ69358.1| DNA polymerase I [Caulobacter sp. K31] Length = 973 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 98/554 (17%), Positives = 176/554 (31%), Gaps = 100/554 (18%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + + L L D V+ +A N+ ++ + + GI++ GL Sbjct: 441 EEVIAALKPLLEDPAVLKIAQNAKYDIAVLARY-GINVGPIEDTMLISYVLEAGLHGHGM 499 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + L ++ +A KG I A Y D + T Sbjct: 500 DELSELWLGHKPISFKQ----VAGSGKGQISFKHVGLAEATA---------YAAEDADVT 546 Query: 171 RELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L+ L P ER L + + + G R+D D + +L + Sbjct: 547 LRLYNVLKPRLAREGLLTVYETLERPLPAVLAAMENDGIRVDPDTLRRLSNEFSMRMADF 606 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + +L + + LF + + T + + LA + L Sbjct: 607 EARAQELVGRPF-NLGSPKQIGDVLFGEMALKGGKKT-ATGQWSTDSDVLEALALEHELP 664 Query: 281 RLASSGSAILKLNT-----LSEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 R+ + KL L A++ G R+ + A+ TGR S QN+P + Sbjct: 665 RVLLDWRQLSKLKGTYTENLIAAIAPGGGNRVHTSYAL-AATTTGRLSSSDPNLQNIPIR 723 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A+ GK L+ AD + IE R+LA I Sbjct: 724 T------------------------EEGRKIRKAFVAAPGKVLISADYSQIELRLLAHIG 759 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 KAF G DI+ T ++ FN PI+ + E R K + + Y G A Sbjct: 760 DIPQLKKAFQEGLDIHAMTASEMFNVPIEGMPSEVRRRAKAINFGIVYGISAFGLANQLS 819 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQ 488 G ++ + + + + +A + + Sbjct: 820 IPQGEAGAYIKTYFERFPGIQAYMEATKAFVREHGYVTTIFGRKINIPDIGGKSVAHRQF 879 Query: 489 YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSI 538 A+ + G A +++++A + +LQ+ +L V E Sbjct: 880 AERAAINAPIQGAAADVMRRAMVRMPGALKAAGLSSRMLLQVHDEL-------VFEAPEA 932 Query: 539 SARRVANVPRLVMR 552 A+ +V R VM+ Sbjct: 933 EAQATIDVAREVMQ 946 >gi|319935865|ref|ZP_08010291.1| DNA polymerase I [Coprobacillus sp. 29_1] gi|319809132|gb|EFW05613.1| DNA polymerase I [Coprobacillus sp. 29_1] Length = 869 Score = 268 bits (684), Expect = 3e-69, Method: Composition-based stats. Identities = 102/545 (18%), Positives = 188/545 (34%), Gaps = 91/545 (16%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 I L YA ++ + E + D L YL+DE ++N +IL + GI Sbjct: 325 HKSIVL-GYALYNKEQAFYISFEDALNDQDFLNYLKDEKYSKYSYNIK-AQILSARWNGI 382 Query: 87 DIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 DI + LA L +K+ C ++ + F K + Sbjct: 383 DIKGMNF--DLQLASYILNPSLKDEMKSICDYYDYDS-------VQYEEEVFGKLAKKHI 433 Query: 144 PYDCTRANHV-----QAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDR 197 P A H + L E +R + + +L++ L E + + + Sbjct: 434 PEIDLLARHTVSKAKAIYDLKDEAIQRLKDEEQFDLYQNL------ELPVTYILADMEYV 487 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +ID+ ++ +++ Q+ K+++EDI L D + L LF G+ + Sbjct: 488 GAKIDIHVLKEMEMDFEQQIKQIEEDIYMLADKEF-NISSPKQLGEVLFERLGLPNGKKT 546 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T + IL LI + + + L E V +DG++ Sbjct: 547 KTGYSTSQDILEKIEGLHPIIPLIQKYRMLTKLSSTYVKGLQEQVFADGKIHTIYN-QAL 605 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 ++TGR S QN+P +R I S+ Sbjct: 606 TQTGRLSSIEPNLQNIP------------------------VRQEEGKLIRKAFIPSHDY 641 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV D + IE R+LA +AG I+AF +DI+ T A F ++V+ R K Sbjct: 642 -LVTFDYSQIELRILAHLAGVQSLIEAFNQDKDIHTHTAALVFKVKDEEVTANMRRQAKA 700 Query: 435 MELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474 + + Y G ++ ++++ + + D Sbjct: 701 VNFGIIYGMGEFKLSQQIGVSLKEAKEFIRRYFEEYPEIKVYMDQIVEDCKNTGYVSTVL 760 Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ----------GVLQ 519 + +++Q FA+ + G+ +++K A +Q +LQ Sbjct: 761 NRKRYIPTINDKNFMVREQARRFAMNSPIQGSGADILKLAMMKVNQLMKDKHLKSEMILQ 820 Query: 520 LWKDL 524 + +L Sbjct: 821 VHDEL 825 >gi|213581306|ref|ZP_03363132.1| DNA polymerase I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 437 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 87/482 (18%), Positives = 163/482 (33%), Gaps = 92/482 (19%) Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKMEE--- 127 N ++R + + GI++ + T + + + L+ + +H T E Sbjct: 1 NLKYDRGVLQNY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLSDRWLKHKTITFEDIA 58 Query: 128 GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------- 179 GK F + ++ + G Y D + T +L ++ P Sbjct: 59 GKGKNQLTFNQIAL----------------EEAGRYAAEDADVTLQLHLKMWPELQQHKG 102 Query: 180 ----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E L + + G +ID ++ K E I +L++ + S Sbjct: 103 PLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAELEKKAHDIAGEAFNLS 162 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 T L+ LF GI + + G S S + +LA D L ++ + KL Sbjct: 163 -STKQLQTILFEKQGIKPLKKTPGGAPST-SEEVLEELALDYPLPKVILEYRGLAKLKST 220 Query: 293 --NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ GR+ + + TGR S QN+P Sbjct: 221 YTDKLPLMINPKTGRVHTSY-HQAVTATGRLSSTDPNLQNIP------------------ 261 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R IA +V AD + IE R++A ++ + + AFA G+DI+ Sbjct: 262 ------VRNEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIH 315 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQN 465 T A+ F P+D V+ EQR K + L Y A + + + + Sbjct: 316 RATAAEVFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFER 375 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYP---------------------EFAVKDKLIGTACE 504 + + +A++ + A+ + GTA + Sbjct: 376 YPGVLEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAAD 435 Query: 505 LV 506 ++ Sbjct: 436 II 437 >gi|150003775|ref|YP_001298519.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] gi|149932199|gb|ABR38897.1| DNA polymerase I [Bacteroides vulgatus ATCC 8482] Length = 971 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 95/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%) Query: 5 FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 +D ET P+ VG+ ++YAE + PV DR E + ++ Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRAEAQKIVNEFRPAF 452 Query: 62 RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115 E V+ V N ++ ++ D ++ L + + Sbjct: 453 EKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ E + +G+ + +I + L E D E Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + + G R+D + + + E +++E++ +L + Sbjct: 566 KLF--YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 + LF I T + + S + L + + KL Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682 Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ G++ + + TGR S QN+P + Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDTNMIEAFKEGDDIH 777 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T AK + IDKV++EQR+ K + Y G A+ + + + Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837 Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + D S + ++ A+ + G+A + Sbjct: 838 YPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 ++K A +Q +LQ+ +L +E Sbjct: 898 IIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938 >gi|332184717|gb|AEE26971.1| DNA polymerase I [Francisella cf. novicida 3523] Length = 897 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 102/553 (18%), Positives = 184/553 (33%), Gaps = 79/553 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D VAHN F+ + K I+I K T ++A L Sbjct: 373 DKLKPLFADVKKAKVAHNFKFDEKVLSKYA-IEINGK-VDDTMIMAYVLKSSGKHDMDSL 430 Query: 115 A---LNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVE 168 + L + GK Y A+ + + F ++D E Sbjct: 431 SKEHLGIEPIAYTAIAGTGKHQQTLDQIDIEIVAKYAAEDADITFRLFNHFKALLEQD-E 489 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 +L+ + E L ++ + G +ID +++ + K+L+ L Sbjct: 490 TLYKLY------CEIEMPLTIILNQMEKTGVKIDATKLIQQSASLETSIKELESKCYNLA 543 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 S LR LF G+ V + + S + QLA+D + L Sbjct: 544 GQEFNLS-SPVQLREILFEKLGLPPVKKTAKG-QVSTSEEVLVQLAEDYEIAALIMKYRH 601 Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KL + L + + + R+ + G + TGR S QN+P + Sbjct: 602 LSKLKNTYTDKLPKMLDVNSRVHTSYNQTG-TVTGRLSSSDPNLQNIPIKS--------- 651 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA NG +V AD + IE R++A ++ + +KAF Sbjct: 652 ---------------PEGRKIREAFIAENGYCIVAADYSQIELRIMAHLSKDKNLLKAFN 696 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 DI+ T A+ ID+VS EQR K + L Y AK + + + Sbjct: 697 QSLDIHSATAAEVLGIGIDEVSSEQRRKAKAINFGLIYGMSAFGLAKQLEIPRAEAQEYI 756 Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498 + S + + S ++ ++ A+ + Sbjct: 757 DIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRNAAERAAINAPM 816 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 GTA +++KKA + +LQ + V+ + V V + + + Sbjct: 817 QGTAADIIKKAMIDVNTMILQ-------EYNSEVKMVMQVHDELVFEVKKTKLEEIVAKI 869 Query: 559 HIVLPSSRRLVYS 571 ++ ++ +L Sbjct: 870 KSIMEAAVKLSVP 882 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 10/128 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E A+ ++ K + +++ Y + + G YL S+ + +R Sbjct: 746 EIPRAEAQEYIDIYFNRYPSVKEYMTTAKEFAKQNGYVETILGRRLYLPEINSKNVMQRN 805 Query: 593 YGGKLTENI-VQAISRDILCEGMKNAT-------KNGYDIVLTVHDEIVSETPDTPYFS- 643 + N +Q + DI+ + M + + +V+ VHDE+V E T Sbjct: 806 AAERAAINAPMQGTAADIIKKAMIDVNTMILQEYNSEVKMVMQVHDELVFEVKKTKLEEI 865 Query: 644 VGTLCSLM 651 V + S+M Sbjct: 866 VAKIKSIM 873 >gi|255013148|ref|ZP_05285274.1| DNA polymerase I [Bacteroides sp. 2_1_7] Length = 921 Score = 267 bits (683), Expect = 3e-69, Method: Composition-based stats. Identities = 84/563 (14%), Positives = 176/563 (31%), Gaps = 105/563 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L++ + + N F+ ++ +K ++ + +++A P + Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +EE + + S+ + P + EY D + T + Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADVTLK 499 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P + E L + + G +D + + + KL++ Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQ 559 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ +L + T + LF +D T S + +L + Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGK 618 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L E ++ G++ + + TGR S QN+P Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395 +R I N AD + IE R++A ++G+ Sbjct: 673 -------------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGD 713 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF +G DI+ T AK + P+++V+ + R K + Y G A+ Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 S + + + + SH+ ++ Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 833 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540 A+ + G+A +++K A K + +LQ+ +L E Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE------ 887 Query: 541 RRVANVPRLVMRRHKRDVHIVLP 563 V ++V+ + + + +P Sbjct: 888 ----EVKKIVLEEMENVMKLQVP 906 >gi|296445991|ref|ZP_06887941.1| DNA polymerase I [Methylosinus trichosporium OB3b] gi|296256509|gb|EFH03586.1| DNA polymerase I [Methylosinus trichosporium OB3b] Length = 993 Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats. Identities = 100/600 (16%), Positives = 188/600 (31%), Gaps = 101/600 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD- 56 D ET S L V + +A + P D + +P D Sbjct: 407 DTETTSLDPMSCDLVGVSLATAPGRACYIPLRHVASAGP----DLLGGGEPPPAQIPFDD 462 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 L L +V+ +A N ++ ++ G+D+ A +G + + Sbjct: 463 AIARLKPLLEARSVLKIAQNMKYDLLVLA-CCGVDVAPIEDTMLISYALDSGRNNHGLDE 521 Query: 113 CLALNFSEHLTKM----EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 + G++ I + Y A+ ++ W++ Sbjct: 522 LAKKHLGHECIPFAAVAGSGRSFIGFARVPLDKATEYAAEDADVALRLWRVLKPRLA--A 579 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E +++ L ER + + + RG ID +++ +L AQ+ +L+ +I L Sbjct: 580 EHMTSVYETL------ERPMVGVLAAMERRGVAIDRNILSRLSGEFAQDMARLEAEIYDL 633 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281 + L LF G+ + T S S + LA+ IL+ Sbjct: 634 AGESF-NLGSPKQLGDILFGRMGLPGAKKT-ATGAWSTSASVLEDLAESGNTFAARILDW 691 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S + L V+ R+ + A+ TGR S QN+P Sbjct: 692 RQLSKLKSTYTDALPGFVNKATNRVHTSYAL-AATTTGRLSSSEPNLQNIP--------- 741 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 A +R +A G L+ AD + IE R+LA IA + Sbjct: 742 ---------------VRNEAGRKIRKAFVAEPGHALISADYSQIELRLLAHIADIPQLRQ 786 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AFA G DI+ T ++ F P+ + + R K + + Y G A Sbjct: 787 AFAEGIDIHAKTASEMFGVPVQGMPSDVRRRAKAINFGIIYGISAFGLANQLGIPREEAA 846 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVK 495 ++++ + + D + + + A+ Sbjct: 847 AYIKRYFERFPGIRDYMDKTKRLVREQGVVTTIFGRKCHFPRIGSSNASERAFFERAAIN 906 Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + G A +++++A + ++Q+ +L E +RV Sbjct: 907 APIQGAAADIIRRAMARMDAALATAGCSARMLMQVHDELVFEAPLEETETTIAVVKRVME 966 >gi|302188971|ref|ZP_07265644.1| DNA polymerase I [Pseudomonas syringae pv. syringae 642] Length = 921 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 184/555 (33%), Gaps = 99/555 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D + V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKIKVGQHAKFAINLLANCA--- 416 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 A+ L + T+ + + I+ Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIA 469 Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 A + A + G Y + + T L + L+D E L + Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR Sbjct: 589 PVLSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479 + + R K + L Y AK + ++ + + +A+ Sbjct: 743 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 802 Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++KKA A + Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 862 Query: 515 -----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 863 SGLDARVILQVHDEL 877 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|325299488|ref|YP_004259405.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] gi|324319041|gb|ADY36932.1| DNA polymerase I [Bacteroides salanitronis DSM 18170] Length = 923 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 98/586 (16%), Positives = 183/586 (31%), Gaps = 102/586 (17%) Query: 4 LFIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 L +D ET P+ VG+ +AYAE + PV DRTE + Sbjct: 353 LSLDTETTGTDPIRAELVGMSFAYAENQAFYV--------PVPA-DRTEAQRIVDKFKPV 403 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + + V N ++ ++ + + + +++A P +E Sbjct: 404 FENPQTLKVGQNIKYDMLVLANY---GVEIQGPMFDTMIAHYVLQPELHHGMD---YLAE 457 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 E K KG D AN Y D + T +L L Sbjct: 458 IYLHYETIKIEELIGPKGKNQKNMRDLDPANI-------YRYACEDADVTLKLKNVLEKE 510 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 D E L + + G RID + + + +++E++ +L Sbjct: 511 LKQNDAEALFCDIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHRLAGV 570 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + LF I T + + S + L + + Sbjct: 571 EFNIA-SPKQVGEVLFDRLKIVDKPKKTKTGQYVTSEEVLESLKGKHEIVEKILEHRGLK 629 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ G + + + TGR S QN+P Sbjct: 630 KLLGTYIDALPQLINPETGHIHTSFN-QTVTATGRLSSSNPNLQNIP------------- 675 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I G + AD + IE R++A ++G+ I+AF Sbjct: 676 -----------VRNEDGKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEAFRA 724 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 +DI+ T AK + ++ V++EQR+ K + Y G A+ + Sbjct: 725 NQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVFGLAERLGIDRKEAKELID 784 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + +N + D S + ++ A+ + Sbjct: 785 GYFENYPHVKEYMDSSIQAARQKGYIETVFRRRRYLPDINSRNAVVRGYAERNAINAPIQ 844 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 G+A +++K A + + +LQ+ +L +E Sbjct: 845 GSAADIIKVAMIRIYRRFREEGIRSKMILQVHDELNFSVVPEEKEK 890 >gi|78224176|ref|YP_385923.1| DNA polymerase I [Geobacter metallireducens GS-15] gi|78195431|gb|ABB33198.1| DNA polymerase I [Geobacter metallireducens GS-15] Length = 892 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 103/598 (17%), Positives = 188/598 (31%), Gaps = 101/598 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWD-----RTEQSAMPSD- 56 +D+ET S PL +A I + ++ D +P Sbjct: 314 TFAVDLETTSLNPL----------EAEIVGISLSYRDHEACYIPVGHFYLGAPEQLPRRR 363 Query: 57 LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 +L L D + V N ++ +F++ I C +++A P + Sbjct: 364 VLDALTPLLIDPKIRKVGQNLKYDYQVFRRH---GIELGGVWCDTMVASYLLNPVRSGHG 420 Query: 113 CLALNFSEHLTKM-------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +L KM +GK + + Y C ++ AW L + R Sbjct: 421 LDSLAVEHLDHKMISYEEVAGKGKEQVNFAQVPVEKASTYSCEDSDA--AWLLHRLFLPR 478 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 ++ D E L + + G ++DL L+ +L ++ +L+ I Sbjct: 479 -----VAVWGMERLFFDVEMPLVPILAEMELAGVKLDLPLLGELSAGFGKQLAELEGRIT 533 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LIL 279 L + L LF + ++ + + +LA+ LIL Sbjct: 534 GLAPEPF-NLNSPKQLGEVLFEKLKLPTGKKTKTKTGWSTNVEELERLAEAGHEIAALIL 592 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V GR+ + + TGR S QN+P + Sbjct: 593 QYRGLAKLKSTYTDALPKLVQPATGRVHTSYN-QTVTNTGRLSSSEPNLQNIPVRT---- 647 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G L+ AD + IE RVLA + + Sbjct: 648 --------------------EEGRRIRRAFIAEEGHLLLSADYSQIELRVLAHFSEDRVF 687 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 AFA EDI+ T A+ F + V+ E R K + + Y G AK Sbjct: 688 CDAFAKDEDIHTRTAAEVFGLFPEMVTPEMRRQAKAINFGVIYGQGAFSLAKQLGIATKV 747 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 + + F D +S + ++ A Sbjct: 748 AREFIDNYFARHPGARAFLDGCVREAEEKGHVTTLLGRRLPIPDIKSANGNIRAFAQRNA 807 Query: 494 VKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545 V + G+A +++K+A + +L + + V +G ++ ++ Sbjct: 808 VNYPIQGSAADIIKEAMVKVTARMRRDVVGSRLIMQVHDELVFEVPKGEVVAMEQLVR 865 >gi|332039085|gb|EGI75507.1| DNA polymerase I [Hylemonella gracilis ATCC 19624] Length = 924 Score = 267 bits (682), Expect = 5e-69, Method: Composition-based stats. Identities = 98/587 (16%), Positives = 187/587 (31%), Gaps = 120/587 (20%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD--- 56 +D ET S + A I +++ + +P D Sbjct: 347 ALDTETTSLDEMV----------AEIVGISFSVTPGEAAYIPLMHDYPDAPAQLPRDEVL 396 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L +L + + + ++R +F GI++ T + + + A L Sbjct: 397 AKLKGWLENPAKKKLGQHVKYDRHVFANH-GIEVQGY-VHDTMLQSYVLEVHKPHGLASL 454 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A G+ I C P+ + EY D + T + Sbjct: 455 AERHL--------GRKGINYEDLCGKGAKQIPFSQVSID------KAAEYSCEDSDQTLD 500 Query: 173 LFKRLIPLSDGE-------RDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERK 218 + + L P + + R ++ L+ I G ID + + + Q Sbjct: 501 VHRTLWPRLEKDAQEGGKLRFIYELEIASSETLYRIERNGVLIDAPTLAQQSHELGQRIL 560 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L+++ +L + + F G+ +V + T + +LA D Sbjct: 561 QLEQEAYELAGQPF-NLGSPKQIGEIFFGKLGLPIVKKT-ATGAPSTDEEVLEKLADDYP 618 Query: 279 LNRLASSGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L + KL + L++ A+ GR+ + TGR S QN+P Sbjct: 619 LPAKILEHRGLSKLKGTYTDKLAQMALPGTGRVHTHYA-QAVAVTGRLSSNDPNLQNIPI 677 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + VR IA G + AD + IE R++A + Sbjct: 678 RT------------------------PEGRRVREAFIAPPGCLIASADYSQIELRIMAHL 713 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448 +G+ + AF +G D++ T ++ F P V+ EQR K + L Y AK Sbjct: 714 SGDAALLLAFHDGMDVHRATASEVFGVPTSAVTSEQRRYAKTINFGLIYGMSSYGLAKSL 773 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------------------- 488 + ++++ + D +A + + Sbjct: 774 GIDNTAAKNYIERYFDRFAGVKRYMDETRASAKAKGYVETVFGRRLYLPEINSPNGPRRG 833 Query: 489 -YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + GTA +L+K + A K + ++Q+ +L Sbjct: 834 GAERAAINAPMQGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDEL 880 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMT 652 Q + D++ M +A +++ VHDE+V E P+ + + LM Sbjct: 845 QGTAADLIKLSMNAVQRVLDAEGRKTKMIMQVHDELVFEVPENEVDWLKREVPKLMA 901 >gi|171464028|ref|YP_001798141.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193566|gb|ACB44527.1| DNA polymerase I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 942 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 104/573 (18%), Positives = 187/573 (32%), Gaps = 108/573 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQY- 60 +D ET S + A+A A + + + ++ + DL+ Sbjct: 370 AVDTETTS--------LDAFA--AELVGISLSVKPGEACYIPVAHRNGEAQLDRDLVLAR 419 Query: 61 ----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L T + V N ++ +F GI + + T + + LA Sbjct: 420 MKSWLESATHLKVGQNLKYDSHIFANY-GITLKGVVF-DTLLESYVLESHLPHNMDSLAE 477 Query: 117 N-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + EE C + +D ++ +Y D + T L Sbjct: 478 RHLGMKTIRYEEV-------CGKGVHQIGFD------QVDLKIATDYAAEDADITLRLHL 524 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E + + G RID L+ K + + + +L+ +I Sbjct: 525 ELWPQIQESPGLLYVYEKVEMPAMRVLGIMERNGIRIDSALLAKQGQQVGKRLLELEGEI 584 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 KL + + + LF + ++ + S + +LA+D L Sbjct: 585 HKLAGQPF-NIQSPKQIAEILFGQLELPVIKKTPSGAPST-DEEVLQKLAEDYPLPARIL 642 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++ KL L GR+ A TGR + QN+P + Sbjct: 643 DYRSLAKLMSTYIEKLPRMADPKTGRVHTNFSQATAV-TGRLASSDPNLQNIPVRT---- 697 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I + G KL+ AD + IE R++A IA ++ Sbjct: 698 --------------------EEGRRIREAFIPAEGCKLLSADYSQIELRIMAHIAEDENL 737 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AF +G+D++ T A+ F P+D VS EQR KV+ L Y A S Sbjct: 738 LTAFRDGKDVHQATAAEIFGVPLDDVSSEQRRYAKVINFGLIYGMSAFGLAGNLGIECSA 797 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFA 493 + ++ + + + + E+ LW + A Sbjct: 798 AQNYIAKYFDRYPGVAQYMERTRLEARENGYVETVFGRRLWSPEIKGSNGPRRQGAERAA 857 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + GTA +L+K A A ++ W + + Sbjct: 858 INAPMQGTAADLIKLAMIA-----VEDWFEKEQ 885 >gi|49473694|ref|YP_031736.1| DNA polymerase I [Bartonella quintana str. Toulouse] gi|49239197|emb|CAF25513.1| DNA polymerase I [Bartonella quintana str. Toulouse] Length = 968 Score = 266 bits (681), Expect = 5e-69, Method: Composition-based stats. Identities = 90/502 (17%), Positives = 171/502 (34%), Gaps = 91/502 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D+ V+ + N ++ ++ K+ GI I A G + L+ Sbjct: 442 LKPILEDQAVLKIGQNIKYDWLVMKQY-GIVIRCFDDTMLLSYALDAG-ALTHNMDALSE 499 Query: 117 NFSEHL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + H + I F + + + Y D + T Sbjct: 500 RWLGHKPIAYKDLTHNGKKITSFAQVDL----------------KQATLYAAEDADITLR 543 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L++ L P +R L + + +RG +D ++L+L +AQ L+E Sbjct: 544 LWQVLKPQLVARGMTKVYERLDRPLVEVLAKMEERGILVDRQILLRLSGELAQAAFILEE 603 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNR 281 +I +L + L LF + ++ + S + +LA + IL R Sbjct: 604 EIYQLAGEKFNLA-SPKQLGGILFGKMSLPGGTRTKSG-QWSTSAQTLEELAAEGHILPR 661 Query: 282 LASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + KL + L + S GR+ + TGR S QN+P + Sbjct: 662 KIIDWRQLAKLKSTYADALPSYILSKTGRIHTNYSL-AITSTGRLSSSEPNLQNIPVRT- 719 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R+ IA G L+ AD + IE R+LA IA Sbjct: 720 -----------------------TEGRKIRTAFIAPKGHMLLSADYSQIELRILAHIADI 756 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 +AFA G+DI+ T ++ F I+ ++ + R K + + Y G A Sbjct: 757 IALKEAFAQGQDIHAITASQMFGVAIEGMNSDIRRRAKAINFGIIYGISAFGLANQLGLS 816 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 +Q + + + + + + ++ +L ++ Sbjct: 817 RQEASHYIQLYFERFPGIKDYMEMTKNFACRNGYVETIFGRRIHYPEIKAANLQVRSFNE 876 Query: 491 EFAVKDKLIGTACELVKKAWRA 512 A+ + G+A +++++A Sbjct: 877 RAAINAPIQGSAADIIRRAMIQ 898 >gi|66043540|ref|YP_233381.1| DNA polymerase I [Pseudomonas syringae pv. syringae B728a] gi|63254247|gb|AAY35343.1| DNA polymerase A [Pseudomonas syringae pv. syringae B728a] Length = 921 Score = 266 bits (681), Expect = 6e-69, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 184/555 (33%), Gaps = 99/555 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D + V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKIKVGQHAKFAINLLANCA--- 416 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 A+ L + T+ + + I+ Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 469 Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 A + A + G Y + + T L + L+D E L + Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR Sbjct: 589 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479 + + R K + L Y AK + ++ + + +A+ Sbjct: 743 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 802 Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++KKA A + Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 862 Query: 515 -----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 863 SGLDARVILQVHDEL 877 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|325954851|ref|YP_004238511.1| DNA polymerase I [Weeksella virosa DSM 16922] gi|323437469|gb|ADX67933.1| DNA polymerase I [Weeksella virosa DSM 16922] Length = 941 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 110/612 (17%), Positives = 207/612 (33%), Gaps = 106/612 (17%) Query: 1 MSKL---FIDIETRSPQPL--PKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAM 53 M L D ET S PL VG+ E+ +DD + Sbjct: 366 MKTLDSFAFDTETTSLDPLEAKLVGISFSWEKGKGYYLPFPEDFDDA----------KNI 415 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + + + + + HN ++ + K GI I + + T + Sbjct: 416 ILEFAELFSNPAIEKIGHNIKYDLKVLYKY-GIRIDGENF-DTMIAHYLLNPDMRHNLDV 473 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ + + K + LI + K + D EY D + T +L Sbjct: 474 LSETYLGY--KPVSIETLIGKKGKNQKNFREVDLIEQT---------EYGTEDSDVTFQL 522 Query: 174 FKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 P + E L + T+ G R+D+D + +L + ++ K+L++ Sbjct: 523 KNIFEPELEKVSLTKLFRNIEMPLMKVLATMEIEGIRLDVDFLQQLSKKHQEKIKELEQK 582 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI----L 279 I + L LF ++ T + +++LA I L Sbjct: 583 IFSEAGEEF-NLNSPKQLGDILFDKLKLEPKSKKTKTGQYSTGEEILSKLAHYPIIKNIL 641 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L E V+ R+ T A+ TGR S QN+P + Sbjct: 642 HYRQLQKLKSTYIDALPELVNPVTQRVHTTFAQTVAA-TGRLSSVNPNLQNIPIRT---- 696 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA K++ AD + IE R++A +A + Sbjct: 697 --------------------EEGQQIRKAFIARNPEYKIISADYSQIELRLIAQMAQDPV 736 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +KAF +GEDI+ +T AK F +D+V++EQR+ K + + Y G A+ + Sbjct: 737 MVKAFQDGEDIHASTAAKIFGVALDEVTREQRSQAKTVNFGIIYGVSAFGLAQQTGLSNT 796 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + + + D + A + + ++ Sbjct: 797 EAKKLIDAYYETYPTLKKYIDQQIASARENGFVETLMRRRRYLKDINSRNNTVRSHAERN 856 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 AV + G+A ++VK A +Q+ K+L + + + V + P + Sbjct: 857 AVNAPIQGSAADIVKLAM-------IQIQKELDK--KFATKMLLQVHDELVFDAPISEVE 907 Query: 553 RHKRDVHIVLPS 564 + + + S Sbjct: 908 EVSKMIKTTMES 919 >gi|188993608|ref|YP_001905618.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. B100] gi|167735368|emb|CAP53582.1| DNA-directed DNA polymerase [Xanthomonas campestris pv. campestris] Length = 927 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 101/577 (17%), Positives = 187/577 (32%), Gaps = 106/577 (18%) Query: 7 DIETRSPQPLPKV--GVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L G+ AE QA + + P +L DRT+ + L L Sbjct: 354 DTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQ---ALAQLAPLLT 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V + + ++ + ++ +G ++ Sbjct: 410 DPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 469 Query: 123 TKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K E+ GK +F + S++ D TR Y D + T L + L Sbjct: 470 VKYEDICGKGAKQIKFAQVSLE----DATR------------YAAEDADITLRLHQVLGK 513 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 D E L + + I G +D + + +++ + +L Sbjct: 514 RLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA 573 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L+ LF + V + S + + +A L R+ + Sbjct: 574 GRTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILDYRS 631 Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L E + GR+ + GA+ TGR S QN+P + Sbjct: 632 LAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------ 684 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G+KL+ D + IE R++A ++G+ + AF Sbjct: 685 ------------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAF 726 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G D++ T A+ F ID VS ++R K + L Y A+ Sbjct: 727 ESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDY 786 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 + + F + + ++ + A+ Sbjct: 787 IALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAP 846 Query: 498 LIGTACELVKKAWRAKHQ----------GVLQLWKDL 524 + GTA +++K+A + +LQ+ +L Sbjct: 847 MQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDEL 883 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 10/172 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 735 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 794 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 795 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 854 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M + ++L VHDE+V E + + + + M+ Sbjct: 855 IKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAA 906 >gi|21233442|ref|NP_639359.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770406|ref|YP_245168.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] gi|21115286|gb|AAM43241.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575738|gb|AAY51148.1| DNA polymerase I [Xanthomonas campestris pv. campestris str. 8004] Length = 927 Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats. Identities = 101/577 (17%), Positives = 187/577 (32%), Gaps = 106/577 (18%) Query: 7 DIETRSPQPLPKV--GVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L G+ AE QA + + P +L DRT+ + L L Sbjct: 354 DTETDSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQL-DRTQ---ALAQLAPLLT 409 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D V + + ++ + ++ +G ++ Sbjct: 410 DPAVRKLGQHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDT 469 Query: 123 TKMEE--GKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 K E+ GK +F + S++ D TR Y D + T L + L Sbjct: 470 VKYEDICGKGAKQIKFAQVSLE----DATR------------YAAEDADITLRLHQVLGK 513 Query: 180 -----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 D E L + + I G +D + + +++ + +L Sbjct: 514 RLAAEPALESVYRDIEMPLVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELA 573 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L+ LF + V + S + + +A L R+ + Sbjct: 574 GRTF-NLDSPKQLQALLFDELKLPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILDYRS 631 Query: 289 ILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L E + GR+ + GA+ TGR S QN+P + Sbjct: 632 LAKLRSTYTDKLPEMIHPQSGRVHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------ 684 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G+KL+ D + IE R++A ++G+ + AF Sbjct: 685 ------------------GRRIRRAFVAPAGRKLIACDYSQIELRIMAHLSGDPGLVGAF 726 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 +G D++ T A+ F ID VS ++R K + L Y A+ Sbjct: 727 ESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDY 786 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 + + F + + ++ + A+ Sbjct: 787 IALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAP 846 Query: 498 LIGTACELVKKAWRAKHQ----------GVLQLWKDL 524 + GTA +++K+A + +LQ+ +L Sbjct: 847 MQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDEL 883 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 10/172 (5%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 A ++ G + V R + + F Q G G A+ + Sbjct: 735 ATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMSAFGLARQLGIGRGEAQDYIALYFSRY 794 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YL+ + +R + N +Q + DI Sbjct: 795 PGVRDFMETTRQQARDKGYVETVFGRRLYLDFINAGSQGQRAGAERAAINAPMQGTAADI 854 Query: 610 LCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M + ++L VHDE+V E + + + + M+ Sbjct: 855 IKRAMVSVDGWIADHAQRALMILQVHDELVFEADADFVDTLLAEVTARMSAA 906 >gi|301311753|ref|ZP_07217678.1| DNA polymerase type I [Bacteroides sp. 20_3] gi|300830313|gb|EFK60958.1| DNA polymerase type I [Bacteroides sp. 20_3] Length = 921 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 81/534 (15%), Positives = 166/534 (31%), Gaps = 95/534 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L++ + + N F+ ++ +K ++ + +++A P + Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +EE + + S+ + P + EY D + T + Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADITLK 499 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P + E L + + G +D + + + KL++ Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQ 559 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ +L + T + LF +D T S + +L + Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGK 618 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L E ++ G++ + + TGR S QN+P Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395 +R I N AD + IE R++A ++G+ Sbjct: 673 -------------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGD 713 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF +G DI+ T AK + P+++V+ + R K + Y G A+ Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 S + + + + SH+ ++ Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 833 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 A+ + G+A +++K A K + +LQ+ +L E Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE 887 >gi|221135267|ref|ZP_03561570.1| DNA polymerase I [Glaciecola sp. HTCC2999] Length = 931 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 92/554 (16%), Positives = 181/554 (32%), Gaps = 102/554 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL---WDRTEQSAMPSDLLQYLRDETVM 67 + + + A A + + D P +L W L L++ Sbjct: 365 YMEAQIVGISLCVAAGDACYIPLLHDYPDAPEQLNSQWAL-------EQLTPLLKNSKNQ 417 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEHLTKME 126 V HN F++ + GI + + T + + + + L+L++ H Sbjct: 418 KVGHNLKFDKNVLANH-GITLNGVAY-DTMLESYVLNSVVTKHHIEALSLHYLGHSPITL 475 Query: 127 E---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 E GK F + + + + + L + L P Sbjct: 476 ESIAGKGAKQLTFNQIGL----------------AEAAPFAAENADIILRLHQLLWPQLV 519 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +S+ E L + + G ID + + + +A+ L+E + ++ Sbjct: 520 NAPELANVVSELEVPLSQVLSRMEQTGVLIDSQKLAQQSQSLAERILHLEETVHEMAGEA 579 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + T L+ LF + ++ + S + +LA + L + + K Sbjct: 580 F-NLGSTKQLQHILFEKMNLPVIKKTPKGAPST-GEEVLQELALNYPLPKAIMEYRGLTK 637 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + + GR+ + Q + TGR S QN+P + Sbjct: 638 LKNTYTDKLPKLIDHRTGRVHTSYQ-QAITATGRLSSTDPNLQNIPIRT----------- 685 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 VR IA G K+V AD + IE R++A ++ + + AFANG Sbjct: 686 -------------EEGRKVREAFIARPGYKIVAADYSQIELRIMAHLSSDSGLLHAFANG 732 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 D++ T ++ F ++ V+ EQR K + L Y AK + Sbjct: 733 LDVHKATASEVFGVALEHVTSEQRRSSKAINFGLIYGMSAFGLAKQLNIPRGDAQHYMDT 792 Query: 462 FSQNVKST-STFEDWEQAESHHLWMQDQYPE--------------------FAVKDKLIG 500 + + +D + +++ + A+ + G Sbjct: 793 YFERYPGVLQYMQDTREEAKAQGYVKTVFGRRLYLPEITSSNGARRAGAERAAINAPMQG 852 Query: 501 TACELVKKAWRAKH 514 TA +++K + A Sbjct: 853 TAADIIKLSMLAVD 866 >gi|163867312|ref|YP_001608506.1| DNA polymerase I [Bartonella tribocorum CIP 105476] gi|161016953|emb|CAK00511.1| DNA polymerase I [Bartonella tribocorum CIP 105476] Length = 968 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 89/498 (17%), Positives = 171/498 (34%), Gaps = 93/498 (18%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSE 120 D V+ + N ++ ++ K+ DI + + T +L+ + L+ + E Sbjct: 447 EDSAVLKIGQNIKYDWLVVKQY---DIVIRSFDDTMLLSYALDAGALTHNMDDLSERWLE 503 Query: 121 HL----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 H + I F + + + Y D + T L++ Sbjct: 504 HKPIAYKDLTHNGKKITSFAQVDL----------------KQATLYAAEDADITLRLWQV 547 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P +R L + + +RG +D ++L+L +AQ L+E+I K Sbjct: 548 LKPQLVARGMTKIYERLDRPLVEVLARMEERGILVDRQILLRLSGELAQAALILEEEIYK 607 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL-AKDLILNRLASS 285 D + L LF G+ ++G + S + +L A+ L R Sbjct: 608 QADEKFNLA-SPKQLGDILFDKMGLPGGAKTKGG-QWSTSAQTLEELSAEGHTLPRKIIE 665 Query: 286 GSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + GR+ + TGR S QN+P + Sbjct: 666 WRQLAKLKSTYADALPSYILPKTGRVHTNYSL-AITSTGRLSSSEPNLQNIPVRT----- 719 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R+ IA G L+ AD + IE R+LA IA Sbjct: 720 -------------------AEGRKIRTAFIAPKGHVLLSADYSQIELRILAHIADIKALK 760 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AFA G DI+ T ++ F I+ + + R K + + Y G A Sbjct: 761 EAFAKGHDIHAITASQMFGVAIEGMHSDIRRRAKAINFGIIYGISAFGLANQLGISRQEA 820 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 G +Q + + + + + + ++ ++ ++ A+ Sbjct: 821 GRYIQLYFERFPGIKDYMEKTKSFARENGYVETIFGRRIHYPEIKAKNVKIRSLNERAAI 880 Query: 495 KDKLIGTACELVKKAWRA 512 + G+A +++++A Sbjct: 881 NAPIQGSAADIIRRAMIQ 898 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 16/94 (17%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 RR+ Y ++K + + R +Q + DI+ M Sbjct: 856 GRRIHYPEIKAKNVKIRSLN---ERAAINAP------IQGSAADIIRRAMIQMEDALKEE 906 Query: 621 --GYDIVLTVHDEIVSETP-DTPYFSVGTLCSLM 651 ++L VHDE++ E P + ++ + +M Sbjct: 907 NLSAKMLLQVHDELIFEVPEEESKKTMAVVKDVM 940 >gi|34541416|ref|NP_905895.1| DNA polymerase type I [Porphyromonas gingivalis W83] gi|34397733|gb|AAQ66794.1| DNA polymerase type I [Porphyromonas gingivalis W83] Length = 926 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 96/561 (17%), Positives = 190/561 (33%), Gaps = 97/561 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62 D ET S L A ITLCA + E + L LR Sbjct: 357 SFDTETDSKDALR-------ANIVAITLCA---ESGRAFFIPLPEDEEIGKRRLDLLRPL 406 Query: 63 --DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 D + V N ++ + + I + + +++A P + Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY---GIEVRGQLFDTMIAHYLLFP----------DLRH 453 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ-AWQLFGEYCKRDVEATRELFKRLIP 179 ++ +M E L+ D D + Q Q +Y D + T +L++RL Sbjct: 454 NMDEMAE--TLLGYCTVHYSDLVGSDKQEVHIRQVPLQNLADYAMEDADITWQLYERLNA 511 Query: 180 LSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + + G ++D +++ + + +E ++++++I +L Sbjct: 512 MLSEAGMTSLFESIEMPLVPVLANMERSGVKLDTEVLRRTASGLGEEMQRIEDEIYRLAG 571 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + LF I + + + +L + + RL I Sbjct: 572 HSF-NINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYRGI 630 Query: 290 LKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL L E DG+L + A+ TGR S QN+P + Sbjct: 631 KKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIPIRT---------- 679 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R+ + N + AD + IE R++A ++ ++ I+AF Sbjct: 680 --------------EVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQAFL 725 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +GEDI+ T +K + P+ +V+ + R K + Y G ++ + + Sbjct: 726 HGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRTEAKALI 785 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKL 498 + + + + D AE+ ++ A+ + Sbjct: 786 EGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERNAINAPI 845 Query: 499 IGTACELVKKAWRAKHQGVLQ 519 G+A +L+K A H+ + + Sbjct: 846 QGSAADLIKLAMIRIHEEITE 866 >gi|262383147|ref|ZP_06076284.1| DNA polymerase I [Bacteroides sp. 2_1_33B] gi|262296025|gb|EEY83956.1| DNA polymerase I [Bacteroides sp. 2_1_33B] Length = 921 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 84/563 (14%), Positives = 176/563 (31%), Gaps = 105/563 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L++ + + N F+ ++ +K ++ + +++A P + Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +EE + + S+ + P + EY D + T + Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADITLK 499 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P + E L + + G +D + + + KL++ Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLAEMEATGVTLDTVALRQSSGELTASMNKLEQ 559 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ +L + T + LF +D T S + +L + Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRNKHPIIGK 618 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L E ++ G++ + + TGR S QN+P Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395 +R I N AD + IE R++A ++G+ Sbjct: 673 -------------------VRDDLGREIRKAFIPDNTDCLFFSADYSQIELRIMAHLSGD 713 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF +G DI+ T AK + P+++V+ + R K + Y G A+ Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 S + + + + SH+ ++ Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 833 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540 A+ + G+A +++K A K + +LQ+ +L E Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE------ 887 Query: 541 RRVANVPRLVMRRHKRDVHIVLP 563 V ++V+ + + + +P Sbjct: 888 ----EVKKIVLEEMENVMKLQVP 906 >gi|317402839|gb|EFV83381.1| DNA polymerase I [Achromobacter xylosoxidans C54] Length = 948 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 98/550 (17%), Positives = 185/550 (33%), Gaps = 102/550 (18%) Query: 52 AMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 +P D L +L D + + H++ ++ +F GI + T + A Sbjct: 418 QLPKDEVLARLRPWLEDASRAKLLHHAKYDTHVFANE-GIRLAGIA-EDTMLQAYVLESH 475 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + LA + G++ ++ C +D + G Y Sbjct: 476 RGVGLNDLAQRYL--------GRSGVSYEDLCGKGAKQIGFDEVAVD------KAGHYAA 521 Query: 165 RDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T +L + L P + E + + TI G ++D + + + Sbjct: 522 EDADFTLQLHQVLRPQVAADAGLERIYLLEMQVSAVLTTIERNGVKVDAAELGRQSHKLG 581 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 QE +L++ +L + L LF + +V + G S +++LA Sbjct: 582 QEMLQLEQKAYELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTAGGAPST-DEEVLSKLA 639 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328 +D L ++ + KL + L ++ D GR+ A TGR + Q Sbjct: 640 QDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPDTGRVHTHYS-QAAVITGRLASSDPNLQ 698 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + + VR IA G L+ AD + IE R+ Sbjct: 699 NIPVRTEA------------------------GRRVREAFIAEQG-LLLSADYSQIELRI 733 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 +A ++ + +AFA GEDI+ T ++ F + VS EQR K + L Y G Sbjct: 734 MAHVSDDANLQRAFAAGEDIHRATASEVFGVALADVSSEQRRAAKAINFGLIYGMGVFGL 793 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------- 488 A + ++ + + + + + + Sbjct: 794 ASNLGITRDAAQAYIDRYFARYPGVAMYMENTRRVAREQGYVETVFGRRLQLPEIRGASG 853 Query: 489 -----YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQ 533 A+ + GTA +L+K A A + + ++Q+ +L Sbjct: 854 PRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLEAEKLQTRMIMQVHDELVLEAPDAEL 913 Query: 534 EGGSISARRV 543 E + R+ Sbjct: 914 ELVKQTLPRL 923 >gi|254524679|ref|ZP_05136734.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] gi|219722270|gb|EED40795.1| DNA polymerase I superfamily protein [Stenotrophomonas sp. SKA14] Length = 924 Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats. Identities = 92/555 (16%), Positives = 179/555 (32%), Gaps = 108/555 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + P +L + L L+D + + ++ + ++ Sbjct: 376 AAYIPVGHDYPGAPAQLP----MQQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRH---G 428 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSID 141 + + + ++L N + LAL + + T + GK F + ID Sbjct: 429 VDVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGID 488 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLL 190 Y D + T L + L P D E L + Sbjct: 489 EASR----------------YAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPV 532 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 TI G RID D + + + ++ + +L + L+ LF Sbjct: 533 LTTIEANGVRIDTDELRRQSQDLSSRMLAAQQKATELAGRSF-NLDSPKQLQAVLFDELK 591 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + V + S + + +A+ L R+ + KL + L E V+ GR Sbjct: 592 LPAVVKTPKGQPSTNEEA-LEAIAEQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGR 650 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + GA+ TGR S QN+P + + Sbjct: 651 VHTSYHQSGAA-TGRLSSSDPNLQNIPIRTED------------------------GRRI 685 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G +L+ AD + IE R++A ++ + ++AF G D++ T A+ F +++V Sbjct: 686 RRAFVAPEGCQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEEV 745 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475 + +R K + L Y A+ + + F + Sbjct: 746 TPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRYPGVRDFMERMRQQA 805 Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ---- 515 + + ++ A+ + GTA +++K+A Q Sbjct: 806 RDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRD 865 Query: 516 ------GVLQLWKDL 524 +LQ+ +L Sbjct: 866 SGAPARMILQVHDEL 880 Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F G I + + L Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLG--IDRGQAQDYVALYFS 789 Query: 553 RHKR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + + + + G YLN ++ R + N +Q + Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849 Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 DI+ M + + ++L VHDE+V ET + + + M++ Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQA 903 >gi|330952067|gb|EGH52327.1| DNA polymerase I [Pseudomonas syringae Cit 7] Length = 921 Score = 266 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 86/555 (15%), Positives = 183/555 (32%), Gaps = 99/555 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D + V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPEKIKVGQHAKFAINLLANCA--- 416 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 A+ L + + + + I+ Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTAPRHDRDSLVAKYLTHTPINFQEIA 469 Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 A + A + G Y + + T L + L+D E L + Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR Sbjct: 589 PVLSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479 + + R K + L Y AK + ++ + + +A+ Sbjct: 743 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 802 Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++KKA A + Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 862 Query: 515 -----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 863 SGLDARVILQVHDEL 877 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|254880993|ref|ZP_05253703.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|319640001|ref|ZP_07994728.1| DNA polymerase I [Bacteroides sp. 3_1_40A] gi|254833786|gb|EET14095.1| DNA polymerase I [Bacteroides sp. 4_3_47FAA] gi|317388279|gb|EFV69131.1| DNA polymerase I [Bacteroides sp. 3_1_40A] Length = 971 Score = 266 bits (679), Expect = 9e-69, Method: Composition-based stats. Identities = 95/581 (16%), Positives = 186/581 (32%), Gaps = 94/581 (16%) Query: 5 FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 +D ET P+ VG+ ++YAE + PV DR E + ++ Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRAEAQKIVNEFRPAF 452 Query: 62 RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115 E V+ V N ++ ++ D ++ L + + Sbjct: 453 EKEGVLKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ E + +G+ + +I + L E D E Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + + G R+D + + + E +++E++ +L + Sbjct: 566 KLF--YEIEMPLVPVLAYMERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 + LF I T + + S + L + + KL Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682 Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ G++ + + TGR S QN+P + Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T AK + IDKV++EQR+ K + Y G A+ + + + Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837 Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + D S + ++ A+ + G A + Sbjct: 838 YPQIKEYMDKSIDLARGQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGGAAD 897 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 ++K A +Q +LQ+ +L +E Sbjct: 898 IIKVAMVRIYQRFQSESIKSKMILQVHDELNFSVLPEEKEK 938 >gi|330977284|gb|EGH77239.1| DNA polymerase I [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 921 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 183/555 (32%), Gaps = 99/555 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCA--- 416 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 A+ L + T+ + + I+ Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 469 Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 A + A + G Y + + T L + L+D E L + Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR Sbjct: 589 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479 + + R K + L Y AK + ++ + + +A+ Sbjct: 743 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 802 Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++KKA A + Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 862 Query: 515 -----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 863 SGLDARVILQVHDEL 877 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 13/165 (7%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGT 646 DI+ + M ++G D ++L VHDE+V E + V Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVSE 891 >gi|298373964|ref|ZP_06983922.1| DNA polymerase type I [Bacteroides sp. 3_1_19] gi|298268332|gb|EFI09987.1| DNA polymerase type I [Bacteroides sp. 3_1_19] Length = 921 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 85/563 (15%), Positives = 176/563 (31%), Gaps = 105/563 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L++ + + N F+ ++ +K ++ + +++A P + Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +EE + + S+ + P + EY D + T + Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADVTLK 499 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P + E L + + G +D + + + KL++ Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQ 559 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ +L + T + LF +D T S + +L + Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGK 618 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L E ++ G++ + + TGR S QN+P Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395 +R I N AD + IE R++A ++G+ Sbjct: 673 -------------------VRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGD 713 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF +G DI+ T AK + P++KV+ + R K + Y G A+ Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 S + + + + SH+ ++ Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLPDINSHNAVVRGYAE 833 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540 A+ + G+A +++K A K + +LQ+ +L E Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNIYKEEAE------ 887 Query: 541 RRVANVPRLVMRRHKRDVHIVLP 563 V ++V+ + + + +P Sbjct: 888 ----EVKKIVLEEMENVMKLQVP 906 >gi|28199207|ref|NP_779521.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182681937|ref|YP_001830097.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|28057313|gb|AAO29170.1| phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|182632047|gb|ACB92823.1| DNA-directed DNA polymerase [Xylella fastidiosa M23] gi|307578195|gb|ADN62164.1| DNA-directed DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 377 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 137/374 (36%), Positives = 187/374 (50%), Gaps = 46/374 (12%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F +Y +RDV A R++ KRL + E LW LDQTINDRG +D DL + Sbjct: 3 WAQFVDYARRDVAAMRDVVKRLPSHNYTGAELALWFLDQTINDRGVLVDTDLAQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + ++ L E LT G+++++ Q AL +L G+ L DM + T++ L + + Sbjct: 63 ERAKQALAERTSDLTAGVVQAATQRDALLHHLSTAHGVALPDMQQHTVERCLDDPLLPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASTTSTAKYQALLNCTSRDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+E +T I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQEAITVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSNIEGRVLA 242 Query: 391 WIAGEDWKIKAF----------------------------------------ANGEDIYV 410 W+AGE K+ AF G+DIY Sbjct: 243 WLAGETPKLHAFGEFDTCQGVDGTWHSGEAITHGALRGAPITLQWNAEHAPIRKGDDIYK 302 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 YA +F V+K+QR IGKV ELALGY GG F A+ +DL+ + Sbjct: 303 RAYAHSFGIAPQAVTKQQRQIGKVQELALGYGGGVGAFAAFAAMYHIDLEAIAGYYPPPI 362 Query: 471 TFEDW-EQAESHHL 483 + + + HH Sbjct: 363 STHETAPPHQPHHR 376 >gi|32130563|gb|AAF24859.3|AF050678_1 DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 103/554 (18%), Positives = 190/554 (34%), Gaps = 81/554 (14%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D+ET + L + + +++ + D + + + L + Sbjct: 331 ALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDI------EQVLQRLAPF 384 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LR AH+ ++ ++ ++ T + A G L F++ Sbjct: 385 LRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLG---ENAVGLKELAFTK 439 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 +MEE LI R K + + R +Y DVEAT L + L P Sbjct: 440 LGWEMEEITELIGR-GKKQLTMDRAEIARVT---------QYACADVEATYRLVEVLRPQ 489 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ E L + + G ID+ + +L ++ + L+ I +L Sbjct: 490 LEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELAGH 549 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + + L LF G+ ++ + +L + T + IL Sbjct: 550 PL-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLLKL 608 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L V GR+ A+ TGR S QN+P + + + A Sbjct: 609 KSTYVDALPRQVHPQTGRVHTIFHQTVAA-TGRLSSSDPNLQNIPARGELGLAVRRAFIA 667 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 NR IA L+ D + IE R++A + + ++AFA G+ Sbjct: 668 DNRPGYR---------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGK 712 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T ++ F P+D V+ E R I KV+ + Y G A+ ++ + Sbjct: 713 DIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEAY 772 Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501 Q + + + + + L + AV L GT Sbjct: 773 FQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQGT 832 Query: 502 ACELVKKAWRAKHQ 515 A +++K A A H+ Sbjct: 833 AADIMKLAMIAVHR 846 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%) Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLT 598 A+R R + + L Y + G YL TS R ++ Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMA 824 Query: 599 ENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SL 650 N+ +Q + DI+ M + G ++L VHDE+V E P++ + L + Sbjct: 825 VNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTTELVTTR 884 Query: 651 MTKN--------------PSWAK 659 M++ P+WA Sbjct: 885 MSRVVELSVPLEVDAKAGPNWAD 907 >gi|148260504|ref|YP_001234631.1| DNA polymerase I [Acidiphilium cryptum JF-5] gi|146402185|gb|ABQ30712.1| DNA polymerase I [Acidiphilium cryptum JF-5] Length = 915 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 92/558 (16%), Positives = 166/558 (29%), Gaps = 79/558 (14%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID ET P L + V +A + +D P + P Sbjct: 343 AIDTETTGLNPRHAKLVGISVATAPGRAAYVPLGH--EDGPQLPRPLALERLAPV----- 395 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D +++ + HN+ F+ + ++ D G + AL+ Sbjct: 396 LADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDH 455 Query: 121 HLTKMEEGKALIAR---FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 +E F ID V + EA L++ + Sbjct: 456 RPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRPRLRTEAALALYETM 515 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 ER L + + G +D + + A+ + +I KL + Sbjct: 516 ------ERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLAGRAF-NPGS 568 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILK 291 L LF G+ ++ T + + +LA +L Sbjct: 569 PKQLGEILFDEMGLPGGKRTK-TGAWGTDATVLEELAASGHDLPVRVLEWRQLQKLKSTY 627 Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + +D R+ + + TGR S QN+P + Sbjct: 628 ADALVGEIDIADQRVHTSFS-QAITTTGRLSSNEPNLQNIPIRT---------------- 670 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R IA+ GK L+ AD + IE R+LA +A ++FA GEDI+ Sbjct: 671 --------SEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHA 722 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 T A+ F P++ + R K + + Y G A+ S + + Sbjct: 723 RTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARY 782 Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505 + + + + + A+ L G A ++ Sbjct: 783 PEIRRYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADI 842 Query: 506 VKKAWRAKHQGVLQLWKD 523 +K+A + D Sbjct: 843 IKRAMVRLPAAIRDAGLD 860 Score = 54.0 bits (128), Expect = 7e-05, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 68/219 (31%), Gaps = 23/219 (10%) Query: 456 GLDLQQFSQNVKSTSTFE-DWEQAESHHLWMQDQYPEFAVK-----DKLIGTACELVKKA 509 G +++ + D+ Q E L P D TA E+ Sbjct: 673 GARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLP 732 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMRRHKRDVHIV 561 V + K + G + G A+R + +R ++ Sbjct: 733 MEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNET 792 Query: 562 LPSSRRLVYS-DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKN--- 616 +R Y G Y+ T + R Y + N +Q + DI+ M Sbjct: 793 AEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPA 852 Query: 617 -ATKNGYDIVL--TVHDEIVSETPDTPYFSVGTL-CSLM 651 G D V+ VHDE+V E P + L C++M Sbjct: 853 AIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVM 891 >gi|221632712|ref|YP_002521933.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] gi|221156104|gb|ACM05231.1| DNA polymerase I [Thermomicrobium roseum DSM 5159] Length = 917 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 105/610 (17%), Positives = 201/610 (32%), Gaps = 87/610 (14%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D+ET + L + + +++ + D + + + L + Sbjct: 331 ALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDI------EQVLQRLAPF 384 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LR AH+ ++ ++ ++ T + A G L F++ Sbjct: 385 LRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLG---ENAVGLKELAFTK 439 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 +MEE LI R K + + R +Y DVEAT L + L P Sbjct: 440 LGWEMEEITELIGR-GKKQLTMDRAEIARVT---------QYACADVEATYRLVEVLRPQ 489 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ E L + + G ID+ + +L ++ + L+ I +L Sbjct: 490 LEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELAGH 549 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ ++ + +L + T + IL Sbjct: 550 PF-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLLKL 608 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L V GR+ A+ TGR S QN+P + + + A Sbjct: 609 KSTYVDALPRQVHPQTGRVHTIFHQTVAA-TGRLSSSDPNLQNIPARGELGLAVRRAFIA 667 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 NR IA L+ D + IE R++A + + ++AFA G+ Sbjct: 668 DNRPGYR---------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGK 712 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T ++ F P+D V+ E R I KV+ + Y G A+ ++ + Sbjct: 713 DIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEAY 772 Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501 Q + + + + + L + AV L GT Sbjct: 773 FQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQGT 832 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 A +++K A A H+ ++ + + V E + + + Sbjct: 833 AADIMKLAMIAVHRALAERGLRSRMLLQVHDELVLEVPESELATTTELVTTRMSRVVELS 892 Query: 556 RDVHIVLPSS 565 + + + Sbjct: 893 VPLEVDAKAG 902 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 50/143 (34%), Gaps = 23/143 (16%) Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLT 598 A+R R + + L Y + G YL TS R ++ Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMA 824 Query: 599 ENI-VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SL 650 N+ +Q + DI+ M + ++L VHDE+V E P++ + L + Sbjct: 825 VNMPLQGTAADIMKLAMIAVHRALAERGLRSRMLLQVHDELVLEVPESELATTTELVTTR 884 Query: 651 MTKN--------------PSWAK 659 M++ P+WA Sbjct: 885 MSRVVELSVPLEVDAKAGPNWAD 907 >gi|188995635|ref|YP_001929887.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] gi|188595315|dbj|BAG34290.1| DNA polymerase I [Porphyromonas gingivalis ATCC 33277] Length = 926 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 95/563 (16%), Positives = 188/563 (33%), Gaps = 101/563 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62 D ET S L A ITLCA + E + L LR Sbjct: 357 SFDTETDSKDALR-------ANIVAITLCA---ESGRAFFIPLPEDEEIGKRRLDLLRPL 406 Query: 63 --DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 D + V N ++ + + I + + +++A P + Sbjct: 407 FADTAIGKVGQNMKYDIQVLSRY---GIEVRGQLFDTMIAHYLLFP----------DLRH 453 Query: 121 HLTKMEE---GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 ++ +M E G I D + Q +Y D + T +L++RL Sbjct: 454 NMDEMAETLLGYRTIHYSDLVGSDKQEVHIRQV----PLQNLADYAMEDADITWQLYERL 509 Query: 178 IPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L + + G ++D +++ + + +E ++++++I +L Sbjct: 510 NAMLSEAGMTSLFESIEMPLVPVLVDMERSGVKLDTEVLRRTASRLGEEMQRIEDEIYRL 569 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF I + + + +L + + RL Sbjct: 570 AGHSF-NINSPSQVGTVLFEELQITEKPKKTKSGSYSTNEEILVKLQEKHPIVRLILDYR 628 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 I KL L E DG+L + A+ TGR S QN+P + Sbjct: 629 GIKKLLSTYVEALPEMRYPDGKLHTSFNQTVAT-TGRLSSSNPNLQNIPIRT-------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R+ + N + AD + IE R++A ++ ++ I+A Sbjct: 680 ----------------EVGRGLRAAFVPDNDECIFMSADYSQIELRLMAHLSEDESLIQA 723 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +GEDI+ T +K + P+ +V+ + R K + Y G ++ + Sbjct: 724 FLHGEDIHRATASKIYRLPLVEVTDDMRRRAKTANFGIIYGISAFGLSERLNISRTEAKA 783 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKD 496 ++ + + + D AE+ ++ A+ Sbjct: 784 LIEGYFASYPGVKAYMDRSIAEAKRQGYVTTLFGRKRFLRDINSANAVVRGYAERNAINA 843 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 + G+A +L+K A H+ + + Sbjct: 844 PIQGSAADLIKLAMIRIHEEITE 866 >gi|255320831|ref|ZP_05362005.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262380276|ref|ZP_06073431.1| DNA polymerase I [Acinetobacter radioresistens SH164] gi|255302000|gb|EET81243.1| DNA polymerase I [Acinetobacter radioresistens SK82] gi|262298470|gb|EEY86384.1| DNA polymerase I [Acinetobacter radioresistens SH164] Length = 919 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 96/589 (16%), Positives = 199/589 (33%), Gaps = 108/589 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAE-----------QAVITLCAYAWDDEPVKLWDRTEQSAM 53 ID ET S + AE A A+ + P +L + + Sbjct: 348 AIDTETTSLD-------YRVAEMVGFSVAFDAKDAYYVPLAHDYAGAPEQL----NREQV 396 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKN 111 + + L ++ V + H+ ++ +F I K W ++LA N + + Sbjct: 397 LAQIKPILENDQVEKIGHHLKYDAHIFANH---GIELKGWFFDTMLASYVLNSVATRHGM 453 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 +A + HLT E A KG+ ++ + ++ Y D T Sbjct: 454 DDVARLYLSHLTTTFEQVA-----GKGAKQ-------KSFNQIELEVASPYAAEDAHVTY 501 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L++ L L + E + + + + G R+D + +L A+ ++L Sbjct: 502 RLYEVLAEKLKAHPELCNILYNIEMPVARILTGMEEDGIRLDHGFLDQLSIEFAKTMQEL 561 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD---L 277 ++ +++ + + LF GI + T + S S + ++ + Sbjct: 562 EQQAMEMAGETFNIA-SPKQVGEVLFEKLGIKGGKKT-TTGQFSTSESILEKIEHPIAAV 619 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 IL + + + L + ++ T + TGR S QN+P + Sbjct: 620 ILEHRSLAKLKSTYTDALVKQSNNSTHRVHTSYHQALTATGRLSSSDPNLQNIPIR---- 675 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 G +R IA G+ L+ AD + IE R++A + +D Sbjct: 676 --------------------GEIGRQIRKAFIAPAGRVLLAADYSQIELRLMAHFSQDDA 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AF +G+D++ T A+ ++ V+ +QR K + L Y + Sbjct: 716 LLDAFRHGQDVHRRTAAEVLGIALEDVTNDQRRQAKAVNFGLLYGMSEFGLIRQLGFTRQ 775 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++Q+ + ++ ++ ++ Sbjct: 776 ESQDYIKQYFHRYPGIYEYMQRTRQLALEQGFVDTLFGRRLYTPDIDARNMMVRKAAERA 835 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 A+ L G+A +++K A A + + +L + + V E + Sbjct: 836 AINAPLQGSAADIIKLAMIAVDKILPKDQARLLLQVHDELVFEVDENIA 884 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%) Query: 603 QAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 Q + DI+ M K + ++L VHDE+V E + + L +M Sbjct: 842 QGSAADIIKLAMIAVDKILPKDQARLLLQVHDELVFEVDENIADELAPQLAEVM 895 >gi|238022872|ref|ZP_04603298.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] gi|237865680|gb|EEP66818.1| hypothetical protein GCWU000324_02793 [Kingella oralis ATCC 51147] Length = 930 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 101/588 (17%), Positives = 196/588 (33%), Gaps = 99/588 (16%) Query: 2 SKLFIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 ++ +D ET S P L + + A +AV + + ++ + W + L Sbjct: 353 EQIGLDTETTSLDPMNARLVGISMAFAAGEAVYIPINHTFAEQQLS-W-----ETLLGSL 406 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 YL +T++ + N +++ +F GI + + + LA Sbjct: 407 KPYLESKTLLKIGQNLKYDQHVFANH-GIQLQGIA-GDAMLASYVLESHLGHGLDELAQR 464 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + T E C + + EY +D + + L Sbjct: 465 WLGLETITYES------LCGKGAKQISFADVSV------EQATEYACQDADFALRIEAHL 512 Query: 178 I---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + E + + + G ID + + + E KL++ L Sbjct: 513 KAQMSDEQRKMYEEMELPVAQVLFHMERNGVLIDRAELAQQSAELGAELLKLEQQAYDLA 572 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGS 287 + L+ LF GI + + + SI + + + QLA D L ++ Sbjct: 573 GQPF-NLNSPKQLQEILFTKLGIPTKGLKKTSTGSISTNEAVLEQLAMDYPLPKIILQNR 631 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 ++ KL + L E ++ + T + TGR + QN+P + Sbjct: 632 SLAKLKSTYTDKLPEMINPNTHRIHTNYAQAVAITGRLASNNPNLQNIPIRT-------- 683 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR IA +V AD + IE R++A ++G+ I+AF Sbjct: 684 ----------------SEGRRVRRAFIAPENSVIVSADYSQIELRIMAHLSGDATLIEAF 727 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 NGED++ T A+ F + ++ EQR K + L Y AK + + Sbjct: 728 KNGEDVHRRTAAEVFGMQPENITPEQRRYAKTINFGLIYGMSSYGLAKSLGIDNASADMF 787 Query: 459 LQQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDK 497 ++++ + + + + + + + A+ Sbjct: 788 IKRYFARYTGVADYMQRTKEQAADLGYVETLFGRRLYLPDIHAKNAQARAGAERAAINAP 847 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 + GTA +L+K+A A K + +Q+ +L QE Sbjct: 848 MQGTASDLIKRAMIAVDDFLLSGSLKTRLTMQVHDELVLEVPKSEQER 895 >gi|71897679|ref|ZP_00679924.1| DNA polymerase A [Xylella fastidiosa Ann-1] gi|71732582|gb|EAO34635.1| DNA polymerase A [Xylella fastidiosa Ann-1] Length = 923 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 96/584 (16%), Positives = 185/584 (31%), Gaps = 114/584 (19%) Query: 5 FIDIETRSPQPL----------PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 +D ET S P+ +VG AY + + PV+L ++ Sbjct: 346 ALDTETDSLDPMQAVLIGLSFASEVGCAAY------LPFGHDYPGAPVQL----DRGQAL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L L D V V + ++ + ++ + T+G + Sbjct: 396 ALLQPLLEDPAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLA 455 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + K + KG+ P Q +Y D + T L Sbjct: 456 RRHLGYETMKY------VDLVGKGAKQIPFSHVGV-------QEATQYAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P + E L + + I G +ID + + K +++ + Sbjct: 503 CVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L++ LF + +V + S + + + L R+ Sbjct: 563 AMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEA-LEAIVDQHALPRVI 620 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL L E + GR+ GA+ TGR S QN+P + Sbjct: 621 LEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD- 678 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A +G+KL+ D + IE R++A ++G+ Sbjct: 679 -----------------------GRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AF +G D++ A+ F ID+V+ +R K + L Y A+ Sbjct: 716 LVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRG 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEF 492 + + F + + ++ + Sbjct: 776 EAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 835 Query: 493 AVKDKLIGTACELVKKAW------------RAKHQGVLQLWKDL 524 A+ + GTA +++K+A R + +LQ+ +L Sbjct: 836 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDEL 879 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551 A+ ++ G + V R + + F Q G S A+ + Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YLN+ S +R + N +Q + DI Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848 Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M G+ ++L VHDE+V E + + V + + M Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902 >gi|89900119|ref|YP_522590.1| DNA polymerase I [Rhodoferax ferrireducens T118] gi|89344856|gb|ABD69059.1| DNA polymerase I [Rhodoferax ferrireducens T118] Length = 957 Score = 265 bits (678), Expect = 1e-68, Method: Composition-based stats. Identities = 103/590 (17%), Positives = 193/590 (32%), Gaps = 98/590 (16%) Query: 5 FIDIETRSPQPLPKVGVWAY-----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 +D ET S + V E A I A+A+ D P +L + + + L Sbjct: 384 ALDTETTSLDEMRAQIVGISFSVTPGEAAYI-PLAHAYPDAPAQL-PLAD---VLAKLKP 438 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 +L+D + + + ++R +F GI++ T + + + A LA Sbjct: 439 WLQDASHKKLGQHVKYDRHVFANH-GIEVQGYA-HDTMLQSYVLEVTKPHGLASLAER-- 494 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + C + +D +Y D + T ++ + L P Sbjct: 495 ----HLGRSGISFEDLCGKGANQICFDQVDI------AQAAQYSCEDSDMTLDVHRALWP 544 Query: 180 L---SDGERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L +D R ++ L+ I G ID + + Q +L+++ +L Sbjct: 545 LLQANDKLRFIYELEIASSEALYRIERNGVLIDGPTLAVQSHELGQRILQLEKEAHELAG 604 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 S + F G+ +V + T + +LA+D L + Sbjct: 605 QPFNLS-SPKQIAEIFFTKLGLPVVKKTP-TGSPSTDDEVLQKLAEDYPLPAKILEHRGL 662 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L++ GR+ A TGR S QN+P + Sbjct: 663 AKLKGTYTDKLAQLAHPRTGRVHTHYAQAIAV-TGRLSSLEPNLQNIPVRT--------- 712 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR +A G + AD + IE R++A I+G+ + AF Sbjct: 713 ---------------PEGRRVREAFVAPPGSVIASADYSQIELRIMAHISGDAALLLAFH 757 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 +G D++ T ++ F +V+ EQR KV+ L Y AK + + Sbjct: 758 DGIDVHRATASEIFGVDRAQVTSEQRRYAKVINFGLIYGMSAYGLAKALSIDNTAAKNYI 817 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498 +++ + + +A + + A+ + Sbjct: 818 ERYFDRYPGVKNYMEHTRALAKRQGYVETVFGRRLYLPEINSPNGPRRSGAERAAINAPM 877 Query: 499 IGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARR 542 GTA +L+K + Q + ++ + + V E R Sbjct: 878 QGTAADLIKLSMVKVQQVIDEEKRATKMIMQVHDELVFEVPESEIDWVRH 927 >gi|190576375|ref|YP_001974220.1| DNA polymerase I [Stenotrophomonas maltophilia K279a] gi|190014297|emb|CAQ47944.1| putative DNA polymerase I [Stenotrophomonas maltophilia K279a] Length = 924 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 90/555 (16%), Positives = 177/555 (31%), Gaps = 108/555 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + P +L + L L+D + + ++ + ++ Sbjct: 376 AAYIPVGHDYPGAPAQLP----MQQVLDALRSVLQDPAKKKLGQHGKYDLHVLRRH---G 428 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSID 141 + + + ++L N + LAL + + T + GK F + ID Sbjct: 429 VQVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQIPFSQVGID 488 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLL 190 Y D + T L L P E L + Sbjct: 489 EASR----------------YAAEDADITLRLHHALQPQLLAEPALDSVYRGIEMPLVPV 532 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 +I G R+D D + + + ++ + +L + L+ LF Sbjct: 533 LASIEANGVRVDTDELRRQSQDLSSRMLAAQQKATELAGRSF-NLDSPKQLQAVLFDELK 591 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GR 304 + V + S + + +A L R+ + KL + L E V+ D GR Sbjct: 592 LPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGR 650 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + GA+ TGR S QN+P + + Sbjct: 651 VHTSYHQSGAA-TGRLSSSDPNLQNIPIRTED------------------------GRRI 685 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G +L+ AD + IE R++A ++ + ++AF G D++ T A+ F +++V Sbjct: 686 RRAFVAPEGFQLLAADYSQIELRIMAHLSEDPGLVRAFEQGADVHRATAAEVFGRTLEEV 745 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475 + +R K + L Y A+ + + F + Sbjct: 746 TPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRYPGVRDFMERMRQQA 805 Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ---- 515 + + ++ A+ + GTA +++K+A Q Sbjct: 806 RDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRD 865 Query: 516 ------GVLQLWKDL 524 +LQ+ +L Sbjct: 866 SGAPARMILQVHDEL 880 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F G I + + L Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLG--IDRGQAQDYVALYFS 789 Query: 553 RHKR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + + + + G YLN ++ R + N +Q + Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849 Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 DI+ M + + ++L VHDE+V ET + + + M++ Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERMSQA 903 >gi|29569818|gb|AAO85272.1| DNA polymerase I [Thermomicrobium roseum] Length = 917 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 103/554 (18%), Positives = 189/554 (34%), Gaps = 81/554 (14%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D+ET + L + + +++ + D + + + L + Sbjct: 331 ALDVETTALHPMYADLVGIALATAPDRSYYVPLGHTTGDTQLDI------EQVLQRLAPF 384 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 LR AH+ ++ ++ ++ T + A G L F++ Sbjct: 385 LRHPEKQRYAHHGKYDALVLERAG--FPRPHIDFDTMIAAYLLG---ENAVGLKELAFTK 439 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 +MEE LI R K + + R +Y DVEAT L + L P Sbjct: 440 LGWEMEEITELIGR-GKKQLTMDRAEIARVT---------QYACADVEATYRLVEVLRPQ 489 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ E L + + G ID+ + +L ++ + L+ I +L Sbjct: 490 LEAHNQLRLFTEIELPLIDVLIDMEKAGIAIDVPYLEQLSIMLDGQLHALERRIYELAGH 549 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ ++ + +L + T + IL Sbjct: 550 PF-NINSPQQLSTLLFDELGLPRGKRTKTGYSVSQEVLENLRDTHPIVEAILEYRQLLKL 608 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L V GR+ A+ TGR S QN+P + + + A Sbjct: 609 KSTYVDALPRQVHPQTGRVHTIFHQTVAA-TGRLSSSDPNLQNIPARGELGLAVRRAFIA 667 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 NR IA L+ D + IE R++A + + ++AFA G+ Sbjct: 668 DNRPGYR---------------IADEPILLLSVDYSQIELRLMAHFSQDPALLRAFAEGK 712 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T ++ F P+D V+ E R I KV+ + Y G A+ ++ + Sbjct: 713 DIHAATASEVFGVPLDAVTPEMRRIAKVVNFGIMYGMQAYGLARDTGMSRQDAQRFIEAY 772 Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501 Q + + + + + L + AV L GT Sbjct: 773 FQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMAVNMPLQGT 832 Query: 502 ACELVKKAWRAKHQ 515 A +++K A A H+ Sbjct: 833 AADIMKLAMIAVHR 846 Score = 44.7 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 30/143 (20%), Positives = 51/143 (35%), Gaps = 23/143 (16%) Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLT 598 A+R R + + L Y + G YL TS R ++ Sbjct: 765 AQRFIEAYFQRFPGVARYLEETRRRAAELGYVETLFGRRRYLPEITSSNPARRQAAERMA 824 Query: 599 ENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SL 650 N+ +Q + DI+ M + G ++L VHDE+V E P++ + L + Sbjct: 825 VNMPLQGTAADIMKLAMIAVHRPLAERGLRSRMLLQVHDELVLEVPESELATTTELVTTR 884 Query: 651 MTKN--------------PSWAK 659 M++ P+WA Sbjct: 885 MSRVVELSVPLEVDAKAGPNWAD 907 >gi|160883388|ref|ZP_02064391.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] gi|156111108|gb|EDO12853.1| hypothetical protein BACOVA_01357 [Bacteroides ovatus ATCC 8483] Length = 949 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 83/581 (14%), Positives = 171/581 (29%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDKALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + K + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + D Y D + T +L Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + ++++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906 >gi|110640023|ref|YP_680233.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] gi|110282704|gb|ABG60890.1| DNA polymerase I [Cytophaga hutchinsonii ATCC 33406] Length = 946 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 94/557 (16%), Positives = 180/557 (32%), Gaps = 102/557 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL----R 62 D ET S L +A + A ++ + T +L L Sbjct: 379 DTETTSLNAL----------EAELVGLAISFRAKEAYYIPFTSDQIQTQRILDLLQPAFE 428 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLA-LNF 118 ++ V N ++ ++ KK + + ++LA P + LN+ Sbjct: 429 KSSITKVGQNLKYDLLVLKKY---NFAIAGPLFDTMLAHYLLEPEMRHGMDTLAEVYLNY 485 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + + GK KG+ D + EY D + T +L+K Sbjct: 486 TPVSIEQLIGK-------KGAKQGTMRDVEI-------EAIKEYAAEDADITFQLYKFFS 531 Query: 179 PL----------SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 PL ++ E L + + G +ID + + L+ E ++++I + Sbjct: 532 PLVKDQNLNPLFNEVEMPLSEVLADMELEGVKIDTQALSEFSSLLQTEITAVEKEIYEHA 591 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF +D T + +T+L D + Sbjct: 592 GVQF-NISSPKQLGEILFDKLKLDPNAKKTKTGQYATGEDVLTKLDSDHPILANILDYRE 650 Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + DGR+ + + TGR S QN+P + Sbjct: 651 FQKLKSTYVDALPLLLGKDGRVHTSFN-QAVAATGRLSSTNPNLQNIPIRTDR------- 702 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A + ++ AD + IE R++A + ++ + AF Sbjct: 703 -----------------GKEIRRAFVARDNDHVILSADYSQIELRIMAAFSKDESMLNAF 745 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 G DI+ TT +K F PI+ V+ + R K++ + Y G ++ Sbjct: 746 RKGVDIHSTTASKVFKVPIEDVTADMRRKAKMVNFGIIYGISAFGLSQRLSIPRKEAAEI 805 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 + + + + D S ++ M+ A+ Sbjct: 806 ITAYFTEFPAVKAYMDACVNSAREVEYVETILGRRRFLRDINSRNMTMRGFAERNAINAP 865 Query: 498 LIGTACELVKKAWRAKH 514 + G+A +++K A H Sbjct: 866 IQGSAADMIKVAMIRIH 882 >gi|313204661|ref|YP_004043318.1| DNA polymerase i [Paludibacter propionicigenes WB4] gi|312443977|gb|ADQ80333.1| DNA polymerase I [Paludibacter propionicigenes WB4] Length = 949 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 93/562 (16%), Positives = 184/562 (32%), Gaps = 102/562 (18%) Query: 1 MSKLFI------DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQ 50 +S+LFI D ET G+ + V +A + D+TE Sbjct: 370 ISQLFIQKSVCFDTET--------TGLDMFTSDLVGMSFCFA--EGEAYYVSLPEDKTES 419 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSL 109 + + + ++ + + N F+ ++ I K + +++A P Sbjct: 420 KEVLREFKAFFENDRIEKIGQNMKFDLLML---WQYGIELKGKLFDTMIAHYLVQPELRH 476 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LA + + T E L+ K D D + +Y D + Sbjct: 477 GMDYLAEIYLNYRTIHFE--DLVGAKGKNQADIRTVDINK---------LCDYAAEDADV 525 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L + L + E L + T+ G RID + + + ++ E K Sbjct: 526 TFRLKQILEKELKADALENLFYEIEMPLMQVLATMEHTGVRIDSEALRQSSVILTDEMLK 585 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+++I +L + + LF +D T + S + +L + Sbjct: 586 LEKEIHQLAGYEF-NVSSPMQVGEILFDRLKLDDKAKKTKTGQYSTSEDILEKLQSKHPI 644 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + KL + L + +S G++ + A+ TGR S QN+P + Sbjct: 645 IGKILDYRGLKKLLSTYIDALPQLISPITGKVHTSYNQTVAA-TGRLSSTNPNLQNIPIR 703 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R I AD + IE R++A ++ Sbjct: 704 ------------------------DAQGKEIRKAFIPDADCLFFSADYSQIELRIMAHLS 739 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 G+ ++AF +G DI+ T AK + P+++V+ + R K + Y G + Sbjct: 740 GDKNMLEAFNSGHDIHTATAAKIYKIPLEEVTSDMRRKAKTANFGIIYGISVFGLSDRLS 799 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQ 488 + ++ + + D ++ + ++ Sbjct: 800 IPRAEAKELIEGYFATYPDVKKYMDNAIQKAKEMGYVETLLGRKRFLPDINSQNSIVRGF 859 Query: 489 YPEFAVKDKLIGTACELVKKAW 510 A+ + GTA +++K A Sbjct: 860 AERNAINAPIQGTAADIIKIAM 881 >gi|260172660|ref|ZP_05759072.1| DNA polymerase I [Bacteroides sp. D2] gi|315920953|ref|ZP_07917193.1| DNA polymerase I [Bacteroides sp. D2] gi|313694828|gb|EFS31663.1| DNA polymerase I [Bacteroides sp. D2] Length = 949 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 83/581 (14%), Positives = 171/581 (29%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + K + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + D Y D + T +L Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + ++++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906 >gi|329956362|ref|ZP_08296959.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] gi|328524259|gb|EGF51329.1| DNA-directed DNA polymerase [Bacteroides clarus YIT 12056] Length = 952 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 102/589 (17%), Positives = 186/589 (31%), Gaps = 109/589 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSDLL 58 L ID ET +P+ V A AY A DE +K+ ++L Sbjct: 381 LSIDTETTGTEPMEAELVGMSFSDAENR--AYYVPVPANRDEALKIV---------NELR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLAL 116 +E M V N ++ I+ + G+ + K + ++LA P + + Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAEI 486 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 ++E LI K + A V Y D + T +L Sbjct: 487 YLQYQTIHIDE---LIGARGKNQKNM---RDLPAEDV------YRYACEDADVTLKLKNV 534 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L + I G RID + + + E ++++++I Sbjct: 535 LEKELKEQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALRQSSEHFTLRLQEIEKEIYA 594 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L G + + LF I T + + S + L + Sbjct: 595 LAGGETFNIASPKQVGEVLFDRLKIVDKAKKTKTGQYVTSEEVLESLRSKHAIIGKILEY 654 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 655 RGLKKLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR------- 706 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I +G + AD + IE R++A ++ + I Sbjct: 707 -----------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDKNMID 749 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +G DI+ T AK + I+ V+ + R K + Y G A+ Sbjct: 750 AFLSGYDIHAATAAKIYKVDINDVTADMRRKAKTANFGIIYGISVFGLAERMNVPRQEAK 809 Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495 + + + + D S + ++ A+ Sbjct: 810 ELIDGYFETYPQVKEYMDRSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAIN 869 Query: 496 DKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A Q +LQ+ +L +E Sbjct: 870 APIQGSAADIIKVAMSLICQRLQSNNLKAKMILQVHDELNFSVPEAEKE 918 >gi|299145218|ref|ZP_07038286.1| DNA polymerase type I [Bacteroides sp. 3_1_23] gi|298515709|gb|EFI39590.1| DNA polymerase type I [Bacteroides sp. 3_1_23] Length = 949 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 83/581 (14%), Positives = 171/581 (29%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + K + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + D Y D + T +L Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + ++++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKVYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 806 KELIDGYFETYPGVKVYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906 >gi|265752656|ref|ZP_06088225.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] gi|263235842|gb|EEZ21337.1| DNA polymerase I [Bacteroides sp. 3_1_33FAA] Length = 971 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 96/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%) Query: 5 FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 +D ET P+ VG+ ++YAE + PV DRTE + ++ Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRTEAQKIVNEFRPAF 452 Query: 62 RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115 E + V N ++ ++ D ++ L + + Sbjct: 453 EKEGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ E + +G+ + +I + L E D E Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + I G R+D + + + E +++E++ +L + Sbjct: 566 KLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 + LF I T + + S + L + + KL Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682 Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ G++ + + TGR S QN+P + Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T AK + IDKV++EQR+ K + Y G A+ + + + Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837 Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + D S + ++ A+ + G+A + Sbjct: 838 YPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 ++K A +Q +LQ+ +L +E Sbjct: 898 IIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938 >gi|329114079|ref|ZP_08242843.1| DNA polymerase I [Acetobacter pomorum DM001] gi|326696618|gb|EGE48295.1| DNA polymerase I [Acetobacter pomorum DM001] Length = 965 Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats. Identities = 85/535 (15%), Positives = 164/535 (30%), Gaps = 92/535 (17%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTSVLARTNGLPSSLKNACLALNF 118 +D+ V+ + HN+ F+ ++ GI + S +++ GL + L+ Sbjct: 445 QDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSNLHL 503 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + + + P + +Y D + T L+ L Sbjct: 504 NHTPITYDSVTGTGR--NRVPFAQVPV-----------ETATKYAAEDADVTLRLWYVLH 550 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P ER L ++ + G +D + +L + + ++ DI + Sbjct: 551 PTLRTNKALALYEQIERPLSVILADMEKAGIAVDRTELDRLSKDFEARMQGMENDIYEAA 610 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRL 282 + L LF G+ + S + LA IL Sbjct: 611 GRQF-NIGSPKQLGEILFDEMGLKGGKRGKAG-AWSTDSSVLQDLADQGHDLPARILAWR 668 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L D R+ + Q + TGR S QN+P + Sbjct: 669 QLAKLKSTYTDALLRQAGRDDRVHTSFQM-AITSTGRLSSTDPNLQNIPVRT-------- 719 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA +GKKL+ AD + IE R+LA +A +AF Sbjct: 720 ----------------EEGTRIRQAFIAPSGKKLISADYSQIELRLLADVANIPALREAF 763 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLD 458 G+DI+ T ++ FN P++ + R K + + Y A K A Sbjct: 764 QLGQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTY 823 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 + + + + + E+ + A+ Sbjct: 824 IDAYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAP 883 Query: 498 LIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 L G A +++K+A + G ++ + + E + + + Sbjct: 884 LQGGAADIIKRAMVHLPLALQKAGFGATRMLLQVHDELLFETDESDAEAVAEIIK 938 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 9/118 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS-DVKGDCSYLNTATSQLMRERTYGGKL 597 AR + + + + +R Y G Y+ + R Y + Sbjct: 819 EARTYIDAYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQ 878 Query: 598 TENI-VQAISRDILCEGM----KNATKNGY---DIVLTVHDEIVSETPDTPYFSVGTL 647 N +Q + DI+ M K G+ ++L VHDE++ ET ++ +V + Sbjct: 879 AINAPLQGGAADIIKRAMVHLPLALQKAGFGATRMLLQVHDELLFETDESDAEAVAEI 936 >gi|326561447|gb|EGE11797.1| DNA polymerase I [Moraxella catarrhalis 46P47B1] Length = 959 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + + Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 707 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 708 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQD 808 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891 >gi|298484257|ref|ZP_07002421.1| DNA polymerase type I [Bacteroides sp. D22] gi|295085932|emb|CBK67455.1| DNA polymerase I [Bacteroides xylanisolvens XB1A] gi|298269582|gb|EFI11179.1| DNA polymerase type I [Bacteroides sp. D22] Length = 949 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 90/578 (15%), Positives = 178/578 (30%), Gaps = 102/578 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57 L +D ET +P+ A + +++ + V + DR E + + Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + + K + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAV---VKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVE 168 + ++E GK D Y C A+ + L E + D E Sbjct: 484 IYLHYQTIHIDELIGPKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAE 543 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 RL D E L + I G +D + + + + ++++++I +L Sbjct: 544 -------RLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA 594 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF I T + + S + L + Sbjct: 595 GETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRG 653 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 LKKLLGTYIDALPLLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR--------- 703 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G AD + IE R++A ++ + I AF Sbjct: 704 ---------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAF 748 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 + DI+ T AK + + V + R K + Y G A+ Sbjct: 749 LSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKEL 808 Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497 + + + + D S + ++ A+ Sbjct: 809 IDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAP 868 Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 869 IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906 >gi|315497503|ref|YP_004086307.1| DNA polymerase i [Asticcacaulis excentricus CB 48] gi|315415515|gb|ADU12156.1| DNA polymerase I [Asticcacaulis excentricus CB 48] Length = 953 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 80/501 (15%), Positives = 151/501 (30%), Gaps = 86/501 (17%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 +L L D TV+ V N ++ +F + GI + GL + Sbjct: 421 ELKPLLEDPTVLKVGQNIKYDLSVFARY-GIRVAPYDDTMLISYVLEGGLHGHGMDELSE 479 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L+ ++ K + D A EY D + T L+ Sbjct: 480 LHLGHTPIPFKQVAGT----GKSAKSFKFVDLKPAT---------EYAAEDADITLRLWH 526 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P ER + + + G RID ++ L + +++ + Sbjct: 527 VLKPQLAQKRLLTVYETLERAMPTVLSDMELAGVRIDPQVLRLLSQDFGVRMGEIETEAH 586 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD--------- 276 + + L F + + T + + ++A+ Sbjct: 587 TVAGHPF-NLNSPQQLGAIFFDEMALPGGKKT-ATGQWATDVKVLEEIAEKGTHDQGQRL 644 Query: 277 --LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L+L+ + + L E + T ++ TGR S QN+P + Sbjct: 645 ARLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSYQLASTTTGRLSSNEPNLQNIPIRT 704 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R+ +A G KL+ AD + IE R+LA I Sbjct: 705 L------------------------EGRKIRTAFVARAGHKLISADYSQIELRLLAHIGD 740 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKT 450 KAF +G DI+ T ++ F P++ + E R K + + Y A Sbjct: 741 IGQLKKAFQDGIDIHALTASEMFGVPVEGMPSEVRRRAKAINFGIIYGISAFGLGNQLGI 800 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 G ++ + + + D + + Sbjct: 801 DNQEAGRYIKTYFERFPGIKAYMDAAKEQVKATGYVETIFGRRIHIPDIHAKSAGQRAFA 860 Query: 490 PEFAVKDKLIGTACELVKKAW 510 A+ + GTA +++++A Sbjct: 861 ERAAINAPIQGTAADIIRRAM 881 >gi|237720620|ref|ZP_04551101.1| DNA polymerase I [Bacteroides sp. 2_2_4] gi|229450371|gb|EEO56162.1| DNA polymerase I [Bacteroides sp. 2_2_4] Length = 949 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 83/581 (14%), Positives = 171/581 (29%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + K + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + D Y D + T +L Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + ++++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906 >gi|188581651|ref|YP_001925096.1| DNA polymerase I [Methylobacterium populi BJ001] gi|179345149|gb|ACB80561.1| DNA polymerase I [Methylobacterium populi BJ001] Length = 1047 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 89/498 (17%), Positives = 166/498 (33%), Gaps = 83/498 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D + V N ++ + + GID+ T +++ L + + Sbjct: 521 LKPLLEDAGTLKVGQNLKYDFSVLHRY-GIDVAPFD--DTMLISYV--LDAGKGGHGMDE 575 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 HL A +A + + +A Y D + T L++ Sbjct: 576 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 626 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + P ER L + + G ID +++ +L +Q +L+E+I + Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280 + + LF G+ + + + + +LA+ ILN Sbjct: 687 DAGEKFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 744 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++L E R+ + A+ TGR S QN+P + Sbjct: 745 WRQLSKLKSTYTDSLQEHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 798 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A GKKL+ AD + IE R+LA IA Sbjct: 799 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF G DI+ T + F P+D+++ + R K + + Y G A Sbjct: 840 EAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 899 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++Q+ + + D + Q S++ + A+ Sbjct: 900 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 959 Query: 495 KDKLIGTACELVKKAWRA 512 + GTA +++++A Sbjct: 960 NAPIQGTAADIIRRAMTR 977 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 22/116 (18%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 R Y ++ + + R+ +Q + DI+ M Sbjct: 935 GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALGAE 985 Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGL--PL----KAEG 667 ++L VHDE+V E PD ++ + +M + P+ A L PL +A G Sbjct: 986 KLAARMLLQVHDELVFEVPDDEVEATIPVIAHVMEEAPAPALSLSVPLVVEARAAG 1041 >gi|212692553|ref|ZP_03300681.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] gi|212664838|gb|EEB25410.1| hypothetical protein BACDOR_02050 [Bacteroides dorei DSM 17855] Length = 971 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 96/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%) Query: 5 FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 +D ET P+ VG+ ++YAE + PV DRTE + ++ Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRTEAQKIVNEFRPAF 452 Query: 62 RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115 E + V N ++ ++ D ++ L + + Sbjct: 453 EKEGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ E + +G+ + +I + L E D E Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + I G R+D + + + E +++E++ +L + Sbjct: 566 KLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 + LF I T + + S + L + + KL Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682 Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ G++ + + TGR S QN+P + Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T AK + IDKV++EQR+ K + Y G A+ + + + Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837 Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + D S + ++ A+ + G+A + Sbjct: 838 YPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 ++K A +Q +LQ+ +L +E Sbjct: 898 IIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938 >gi|326568454|gb|EGE18534.1| DNA polymerase I [Moraxella catarrhalis BC7] Length = 956 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 372 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 422 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 423 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 479 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 480 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 539 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 540 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 593 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 650 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + + Sbjct: 651 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 704 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 705 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 745 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + Sbjct: 746 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIGVDRAVAQD 805 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 806 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 865 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 866 PLQGSAAEIIKLAMIAVDEVLPK 888 >gi|330972146|gb|EGH72212.1| DNA polymerase I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 822 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 184/555 (33%), Gaps = 99/555 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D + V ++ F L Sbjct: 265 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKIKVGQHAKFAINLLANCA--- 317 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 A+ L + T+ + + I+ Sbjct: 318 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 370 Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 A + A + G Y + + T L + L+D E L + Sbjct: 371 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 430 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 431 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 489 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR Sbjct: 490 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 548 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 549 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 583 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 584 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 643 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479 + + R K + L Y AK + ++ + + +A+ Sbjct: 644 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 703 Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++KKA A + Sbjct: 704 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 763 Query: 515 -----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 764 SGLDARVILQVHDEL 778 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 630 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 687 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 688 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 747 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 748 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 793 >gi|262405632|ref|ZP_06082182.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|294644423|ref|ZP_06722186.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] gi|262356507|gb|EEZ05597.1| DNA polymerase I [Bacteroides sp. 2_1_22] gi|292640258|gb|EFF58513.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CC 2a] Length = 949 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 90/578 (15%), Positives = 178/578 (30%), Gaps = 102/578 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57 L +D ET +P+ A + +++ + V + DR E + + Sbjct: 377 KILSLDTETTETEPM----------DAELVGMSFSIAENEAFYVPVPSDRDEALKIVKEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + + K + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNYGAV---VKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVE 168 + ++E GK D Y C A+ + L E + D E Sbjct: 484 IYLHYQTIHIDELIGPKGKNQKNMRDLDPKDVYLYACEDADITLKLKNVLEKELKENDAE 543 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 RL D E L + I G +D + + + + ++++++I +L Sbjct: 544 -------RLF--YDIEMPLVPVLVNIERNGVLLDTEALQQSSAHFTAQMEQIEKEIYELA 594 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + LF I T + + S + L + Sbjct: 595 GETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRG 653 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 654 LKKLLGTYIDALPLLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR--------- 703 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I G AD + IE R++A ++ + I AF Sbjct: 704 ---------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAF 748 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 + DI+ T AK + + V + R K + Y G A+ Sbjct: 749 LSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKEL 808 Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497 + + + + D S + ++ A+ Sbjct: 809 IDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAP 868 Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 869 IQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906 >gi|326403697|ref|YP_004283779.1| DNA polymerase I [Acidiphilium multivorum AIU301] gi|325050559|dbj|BAJ80897.1| DNA polymerase I [Acidiphilium multivorum AIU301] Length = 892 Score = 265 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 150/498 (30%), Gaps = 68/498 (13%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D +++ + HN+ F+ + ++ D G + AL+ Sbjct: 373 LADPSILKIFHNAKFDLHVLERAGLADATPVDDTMLMSYTLGAGRHGHGMDELSALHLDH 432 Query: 121 HLTKMEEGKALIAR---FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 +E F ID V + EA L++ + Sbjct: 433 RPISYDEVTGTGRSRVSFAAVPIDRATAYAAEDADVTLRLWLLLRPRLRTEAALALYETM 492 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 ER L + + G +D + + A+ + +I KL + Sbjct: 493 ------ERRLLSVLLGMERAGIMVDRADLESMSAEFARRMDDIQREIEKLAGRAF-NPGS 545 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILK 291 L LF G+ ++ T + + +LA +L Sbjct: 546 PKQLGEILFDEMGLPGGKRTK-TGAWGTDATVLEELAASGHDLPVRVLEWRQLQKLKSTY 604 Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + +D R+ + + TGR S QN+P + Sbjct: 605 ADALVGEIDIADQRVHTSFS-QAITTTGRLSSNEPNLQNIPIRT---------------- 647 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R IA+ GK L+ AD + IE R+LA +A ++FA GEDI+ Sbjct: 648 --------SEGARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHA 699 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 T A+ F P++ + R K + + Y G A+ S + + Sbjct: 700 RTAAEVFGLPMEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARY 759 Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505 + + + + + A+ L G A ++ Sbjct: 760 PEIRRYMNETAEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADI 819 Query: 506 VKKAWRAKHQGVLQLWKD 523 +K+A + D Sbjct: 820 IKRAMVRLPAAIRDAGLD 837 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 68/219 (31%), Gaps = 23/219 (10%) Query: 456 GLDLQQFSQNVKSTSTFE-DWEQAESHHLWMQDQYPEFAVK-----DKLIGTACELVKKA 509 G +++ + D+ Q E L P D TA E+ Sbjct: 650 GARIRRAFIAAPGKALISADYSQIELRLLAHVADIPALKESFAKGEDIHARTAAEVFGLP 709 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMRRHKRDVHIV 561 V + K + G + G A+R + +R ++ Sbjct: 710 MEGMDPMVRRRAKAINFGIIYGISAFGLARQLGIENSEAKRFIDAYFARYPEIRRYMNET 769 Query: 562 LPSSRRLVYS-DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKN--- 616 +R Y G Y+ T + R Y + N +Q + DI+ M Sbjct: 770 AEFARTHGYVLTPFGRRCYVPGITEKNPARRGYAERQAINAPLQGGAADIIKRAMVRLPA 829 Query: 617 -ATKNGYDIVL--TVHDEIVSETPDTPYFSVGTL-CSLM 651 G D V+ VHDE+V E P + L C++M Sbjct: 830 AIRDAGLDAVMLLQVHDELVFEAPKDQAEATAKLACAVM 868 >gi|189460222|ref|ZP_03009007.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] gi|189433083|gb|EDV02068.1| hypothetical protein BACCOP_00859 [Bacteroides coprocola DSM 17136] Length = 954 Score = 265 bits (676), Expect = 3e-68, Method: Composition-based stats. Identities = 92/589 (15%), Positives = 188/589 (31%), Gaps = 110/589 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDLLQY 60 +D ET P+ A + ++++ + V + E++ A+ L Sbjct: 385 SLDTETTGTDPIT----------AELVGMSFSFAENQAFYVPVPANREEALAIVKKLKPI 434 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLALN 117 + +E + + N ++ ++ + + + +++A L + Sbjct: 435 IENEKTLKIGQNIKYDMLVL---GNYGVEVRGPMFDTMIAHYVLQPELHHGMDYLAEV-Y 490 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K+EE LI K + T +Y D + T +L K L Sbjct: 491 LKYETIKIEE---LIGPKGKNQKNMRDLSPTSV---------YKYACEDADVTLKLKKVL 538 Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E L + + G RID + + + + K+L+E++ +L Sbjct: 539 EKELIENNVNELFQTIEMPLVPVLAYMERNGVRIDTEALKETSQHFTARMKQLEEEVHQL 598 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF I T + + S + L + Sbjct: 599 AGMEFNIA-SPKQVGEVLFDRLKITDKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR 657 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L ++ G + + + TGR S QN+P + Sbjct: 658 GLKKLLGTYIDALPLLINPKTGHIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED----- 711 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I G + AD + IE R++A ++G+ I+A Sbjct: 712 -------------------GKEIRRAFIPDEGCEFFSADYSQIELRIMAHLSGDPHMIEA 752 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F G+DI+ T AK + ++ V++EQR+ K + Y G A+ Sbjct: 753 FQKGQDIHAATAAKIYKEKLEDVTREQRSKAKTANFGIIYGISVFGLAERLNIERKEAKE 812 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + + +N + D S + ++ A+ Sbjct: 813 LIDGYFENYPHVKEYMDQSIRLAQEKGYIETIFKRKRYLPDINSRNAVVRGYAERNAINA 872 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 + G+A +++K A + + +LQ+ +L +E Sbjct: 873 PIQGSAADIIKVAMIRIYKRFMEEGIRSKMILQVHDELNFSVVPEEKEK 921 >gi|224823577|ref|ZP_03696686.1| DNA polymerase I [Lutiella nitroferrum 2002] gi|224604032|gb|EEG10206.1| DNA polymerase I [Lutiella nitroferrum 2002] Length = 887 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 100/595 (16%), Positives = 182/595 (30%), Gaps = 101/595 (16%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S L + +A A+ + P +L D A L + Sbjct: 313 SLDTETTSLDQMEARLVGISFSVTEGEAAYLPLAHHYAGVPEQL-DLAATLA---RLKPW 368 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFS 119 L + + N ++R + I ++LA + LA Sbjct: 369 LENPARKKLGQNLKYDRHVLANH---GIALAGVADDTLLASYVIESHLTHNMDDLARR-- 423 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-- 177 + E C + + Y D + T L + L Sbjct: 424 ----HLGESTVSYEEICGKGAKQIGFAEVDI------AVASNYAAEDADITLRLNRALAG 473 Query: 178 -------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 D E + + + G ID + + + + +L+++ + Sbjct: 474 KLEGRLASVYRDIELPVAEVLFAMERNGVLIDRQRLAEQSHQLGSQMLQLEQEAYQQAGQ 533 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG-TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GID + + + S + QLA D L +L + Sbjct: 534 PF-NLNSPKQLQEILFGKLGIDTKGVKKTPSGGFSTDESVLEQLALDHPLPKLILQYRGL 592 Query: 290 LKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + D GR+ + TGR S QN+P + Sbjct: 593 AKLKSTYTDKLPSLIRPDTGRVHTNYA-QAVAITGRLSSSDPNLQNIPVRT--------- 642 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR IA G ++V AD + IE R++A ++ + + AFA Sbjct: 643 ---------------AEGRRVREAFIAPPGHRIVSADYSQIELRIMAHLSDDANMLAAFA 687 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 +GEDI+ TT A+ F ++V+ EQR K + L Y A + + Sbjct: 688 SGEDIHKTTAAEVFGVTREQVTSEQRRAAKAINFGLIYGMSAFGLAAQLDIERNAAQQYI 747 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKL 498 ++ + + + + + A+ + Sbjct: 748 DRYFMRFPGVADYMQRTREMAREQGYVETVFGRRLYLPEIRASNPGRRSGAERAAINAPM 807 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K A A + ++Q+ +L ++ Sbjct: 808 QGTAADLIKLAMIAVQRWLVAEGLGSKLIMQVHDELVLEVPEAELARVKERLPQI 862 >gi|83859032|ref|ZP_00952553.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] gi|83852479|gb|EAP90332.1| DNA polymerase I [Oceanicaulis alexandrii HTCC2633] Length = 924 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 82/520 (15%), Positives = 166/520 (31%), Gaps = 100/520 (19%) Query: 46 DRTEQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 D + P + L ++ ++ V N ++ +F++ G+ + Sbjct: 378 DLADGGMKPDQIDESEALGRLKAILENDAILKVGQNFKYDLAVFQRY-GVRVAPYDDTML 436 Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANH 152 + GL + + + +E GK+ RF + + + Sbjct: 437 ISYVQAAGLHNHGMDELAERHLGHTCISFKEVCGTGKSQ-KRFSEIDLKTA--------- 486 Query: 153 VQAWQLFGEYCKRDVEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRID 202 EY D + T L++ L ER L + + G ++D Sbjct: 487 -------TEYAAEDADITLRLWELLKAGLAGKGLSTVYETLERPLPQVLTDMELAGVKVD 539 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + + +L AQ+ + +E KL + + LF G+ ++ Sbjct: 540 VAQLSRLSSDFAQKMAEAEETAHKLAGTKF-NLGSPKQIGEILFGEMGLPGGKKTKSG-A 597 Query: 263 SILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGAS 315 + + +LA L + + KL + L +A++ GR+ + A+ Sbjct: 598 WSTDAAVLDELAAQGHDLPKALLTWRQFSKLKSTYSDALKDAINPNTGRVHTSFSL-AAT 656 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P + +R A G Sbjct: 657 TTGRLSSSEPNLQNIPIRT------------------------EEGRKIREAFTAEPGHV 692 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 +V AD + IE R+LA IA + +AF G+DI+ T ++ F P++ + R K + Sbjct: 693 IVAADYSQIELRLLAHIADVEALKQAFREGQDIHALTASEMFGVPLENMDPTTRRNAKAI 752 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474 + Y G A + + + + D Sbjct: 753 NFGIIYGISAFGLANNLGIGRDEAKSYIDSYFKKFPGIKDYMDAMKDEAKAKGCVSTIFG 812 Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + ++ A+ + G A +++++A Sbjct: 813 RRIHLPGIKDKNPSVRQFTERQAINAPIQGAAADIIRRAM 852 >gi|330938832|gb|EGH42351.1| DNA polymerase I [Pseudomonas syringae pv. pisi str. 1704B] Length = 832 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 183/555 (32%), Gaps = 99/555 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 275 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCA--- 327 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 A+ L + T+ + + I+ Sbjct: 328 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 380 Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 A + A + G Y + + T L + L+D E L + Sbjct: 381 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 440 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 441 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 499 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR Sbjct: 500 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 558 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 559 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 593 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 594 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 653 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE- 479 + + R K + L Y AK + ++ + + +A+ Sbjct: 654 TTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLNYMERTRAQA 713 Query: 480 --------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----- 514 + + ++ A+ + GTA +++KKA A + Sbjct: 714 AEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDE 773 Query: 515 -----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 774 SGLDARVILQVHDEL 788 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 55/165 (33%), Gaps = 13/165 (7%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 640 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 697 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 698 RYPGVLNYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 757 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGT 646 DI+ + M ++G D ++L VHDE+V E + V Sbjct: 758 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDLVDQVSE 802 >gi|326576276|gb|EGE26191.1| DNA polymerase I [Moraxella catarrhalis CO72] Length = 956 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 198/563 (35%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 372 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 422 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 423 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 479 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 480 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 539 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 540 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 593 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 650 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + + Sbjct: 651 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 704 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 705 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 745 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 746 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 805 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 806 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 865 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 866 PLQGSAAEIIKLAMIAVDEVLPK 888 >gi|237709129|ref|ZP_04539610.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] gi|229456825|gb|EEO62546.1| DNA polymerase I [Bacteroides sp. 9_1_42FAA] Length = 971 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 96/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%) Query: 5 FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 +D ET P+ VG+ ++YAE + PV DRTE + ++ Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRTEAQKIVNEFRPAF 452 Query: 62 RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115 E + V N ++ ++ D ++ L + + Sbjct: 453 EKEGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ E + +G+ + +I + L E D E Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADVTLKLKNILEQELKTNDAE------- 565 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + I G R+D + + + E +++E++ +L + Sbjct: 566 KLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 + LF I T + + S + L + + KL Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682 Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ G++ + + TGR S QN+P + Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T AK + IDKV++EQR+ K + Y G A+ + + + Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837 Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + D S + ++ A+ + G+A + Sbjct: 838 YPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 ++K A +Q +LQ+ +L +E Sbjct: 898 IIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938 >gi|237724388|ref|ZP_04554869.1| DNA polymerase I [Bacteroides sp. D4] gi|229437257|gb|EEO47334.1| DNA polymerase I [Bacteroides dorei 5_1_36/D4] Length = 971 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 96/581 (16%), Positives = 187/581 (32%), Gaps = 94/581 (16%) Query: 5 FIDIETRSPQPLPK--VGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 +D ET P+ VG+ ++YAE + PV DRTE + ++ Sbjct: 402 SLDTETTGTDPITAELVGMSFSYAENQAFYV--------PVP-ADRTEAQKIVNEFRPAF 452 Query: 62 RDETVMCVAHNSLFERILFKKTLG------IDIPSKRWICTSVLARTNGLPSSLKNACLA 115 E + V N ++ ++ D ++ L + + Sbjct: 453 EKEGALKVGQNIKYDMLVLGNYGTEVRGPLFDTMVAHYVLQPELRHNMDYLAEIYLHYQT 512 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ E + +G+ + +I + L E D E Sbjct: 513 IHIEELIGPKGKGQKNMRDLSPEAIYKYACEDADITLKLKNILEQELKTNDAE------- 565 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +L + E L + I G R+D + + + E +++E++ +L + Sbjct: 566 KLF--YEIEMPLVPVLAYIERNGVRVDTEALKQTSEHFTARMNQIEEEVHQLAGTDFNIA 623 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 + LF I T + + S + L + + KL Sbjct: 624 -SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHRGLKKLLGT 682 Query: 293 --NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ G++ + + TGR S QN+P + Sbjct: 683 YIDALPLLINKETGKIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED------------- 728 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +G + AD + IE R++A ++G+ I+AF G+DI+ Sbjct: 729 -----------GKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSGDANMIEAFKEGDDIH 777 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T AK + IDKV++EQR+ K + Y G A+ + + + Sbjct: 778 AATAAKVYKISIDKVTREQRSKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFET 837 Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + D S + ++ A+ + G+A + Sbjct: 838 YPQIKEYMDKSIDLARRQGYIETIFGRKRYLPDINSRNSVVRGYAERNAINAPIQGSAAD 897 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 ++K A +Q +LQ+ +L +E Sbjct: 898 IIKAAMVRIYQRFQSENIKSKMILQVHDELNFSVLPEEKEK 938 >gi|288961988|ref|YP_003452298.1| DNA polymerase I [Azospirillum sp. B510] gi|288914268|dbj|BAI75754.1| DNA polymerase I [Azospirillum sp. B510] Length = 972 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 83/498 (16%), Positives = 162/498 (32%), Gaps = 83/498 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D +V+ + HN F+ LF + GI + G + L Sbjct: 450 LKDVLEDPSVLKIGHNFKFDHQLFGRN-GITVSPVDDSMLISYVLEGGSHGHGMDELAEL 508 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + +E C + +D + A+ D + T L+ Sbjct: 509 HLAYTPIPFKEV-------CGTGKNQITFDRVPLDKALAY------AAEDADITLRLWTL 555 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P +R L + + G RID + +L + ++ ++++++ Sbjct: 556 LKPRLVDSRMVTVYETLDRPLVPVVANMEREGVRIDQQALARLSQDLSVRLAEIEKEVHA 615 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280 L + L LF + + T S + +LA+ +L+ Sbjct: 616 LAGQSF-NIGSPKQLGEILFDTLKLGTGKKGK-TGAYSTDSSVLEELAEQGHTIAQRVLD 673 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L E +S GR+ A+ TGR S QN+P + Sbjct: 674 WRQLAKLKSTYTDALQEKISPVTGRVHTAFAL-AATNTGRLSSTDPNLQNIPVRT----- 727 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +AS G KL+ D + IE R++A +A Sbjct: 728 -------------------EEGRKIRRAFVASPGHKLLSVDYSQIELRLVAEMADIQALK 768 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF +G DI+ T A+ F P+ +++ + R K + + Y G + Sbjct: 769 DAFRDGLDIHAATAAQVFGIPLAQMTPDIRRKAKAINFGIIYGISGFGLGRQLGIAPGEA 828 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 ++ + + + + +A + + + A+ Sbjct: 829 NAFIKTYLERFHELKVWMEATKAFARQHGYVATLFGRRCYMPGIQDKNAARRAFAERQAI 888 Query: 495 KDKLIGTACELVKKAWRA 512 + GTA +++K+A Sbjct: 889 NAPIQGTAADIMKRAMNR 906 >gi|326574946|gb|EGE24876.1| DNA polymerase I [Moraxella catarrhalis 101P30B1] Length = 959 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 198/563 (35%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSID-SPPYDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D + Y C A+ + + F ++ Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDVASHYACEDADITFRLFNRFNQHIN 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + + Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 707 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 708 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891 >gi|91975436|ref|YP_568095.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] gi|91681892|gb|ABE38194.1| DNA polymerase I [Rhodopseudomonas palustris BisB5] Length = 1033 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 94/493 (19%), Positives = 171/493 (34%), Gaps = 73/493 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-----TNGLPSSL 109 L L + + N F +L + GI + + + A ++GL +L Sbjct: 505 DALKPLLESAGLAKIGFNIKFTAVLLAQH-GITLRNIDDLQLMSYALDAGRGSHGLD-AL 562 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVE 168 + L GKA I + Y RA+ ++ W++ E Sbjct: 563 SESNLGHTLHALGELTGSGKAKIGFDQVPIERATEYAGERADVALRLWRVLKPRLV--AE 620 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 +++ L ER L + + RG ID ++ +L AQ +++ +I +L Sbjct: 621 RMMAVYETL------ERPLVGVLARMERRGISIDRSVLSRLSADFAQTAARIEAEIRELA 674 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGS 287 I + L LF G+ ++ T S + +LA+ R Sbjct: 675 GEDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHEFPRKILDWR 732 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L V + T A+ TGR S QN+P + Sbjct: 733 QVSKLRSTYTDALPNYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------ 786 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IAS G KLV AD + IE R+L+ +A KAF Sbjct: 787 ------------------GRKIRRAFIASPGYKLVSADYSQIELRLLSEVAEVPALRKAF 828 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 +G DI+ T ++ F P++ + E R K + + Y G A G Sbjct: 829 QDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAY 888 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++++ + + D + ++ + ++ A+ + Sbjct: 889 IKRYFERFPGIRAYMDETRDFCRAHGYVETLFGRKCHYPDIKASNPSIRAFNERAAINAR 948 Query: 498 LIGTACELVKKAW 510 L G+A +++++A Sbjct: 949 LQGSAADIIRRAM 961 >gi|293368661|ref|ZP_06615268.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] gi|292636303|gb|EFF54788.1| DNA-directed DNA polymerase [Bacteroides ovatus SD CMC 3f] Length = 949 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 84/581 (14%), Positives = 172/581 (29%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPSDQDEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + K + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GATVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + D Y D + T +L Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDV---------YLYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + ++++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMEQIEKEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + T + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKIYKTDLKDVGSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 906 >gi|144899389|emb|CAM76253.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense MSR-1] Length = 925 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 87/554 (15%), Positives = 172/554 (31%), Gaps = 97/554 (17%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + + L L D +V+ + HN ++ + + + + T +L+ Sbjct: 392 DILGREVTLAKLAPLLADASVLKIGHNIKYDMQVMAQA---GLTVTAFDDTMLLSYVLDG 448 Query: 106 --PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 + L+ K + C + +D + A+ Sbjct: 449 ASHGHGMDELAKLHLDHDTIKFADV-------CGTGKNQITFDRVPLDKALAY------A 495 Query: 164 KRDVEATRELF---------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L +R++ + + ER L + + G ++D ++ L Sbjct: 496 AEDADITLRLHGALKARLLAERMVTVYETLERPLVPVIVAMEAAGIKVDRTALMALSAEF 555 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 +L+ I L + L LF + ++ T + + +L Sbjct: 556 GGRMAELEVQIQNLAGREF-NVGSPQQLGKVLFENMSLPGGKKTK-TGQWGTGADALEEL 613 Query: 274 AKD------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 A +L+ S + L ++ GR+ + + TGR S Sbjct: 614 AAQGHDLPARVLDWRQLSKLKGTYTDALVAQINPRTGRVHTSFAL-ALTTTGRLSSSDPN 672 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + +R IA G L+ AD + IE Sbjct: 673 LQNIPIRS------------------------EEGRKIRHAFIAEPGHVLLSADYSQIEL 708 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R++A +A I+AF +G DI+ T A+ F P++ + R K + + Y Sbjct: 709 RLVAHVACIKGLIQAFHDGADIHAITAAQVFGVPVEGMDPMLRRRAKAINFGIIYGISAF 768 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------------- 481 G A+ + + F + + E+ Sbjct: 769 GLAQQLGISNGEAKSYIDAYFGRYPEIRDFMERTKEEARANGFVLTPFGRKVFTPGIKDK 828 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV 531 + M+ A+ + G A +++K+A K + +LQ+ +L Sbjct: 829 NGAMRAFAERAAINGPIQGGAADIIKRAMIRLPAALAAEGLKARLLLQVHDELVLEVPVA 888 Query: 532 VQEGGSISARRVAN 545 Q+ RV Sbjct: 889 EQDATRAVVCRVME 902 >gi|326565599|gb|EGE15762.1| DNA polymerase I [Moraxella catarrhalis 12P80B1] Length = 959 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 705 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 706 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891 >gi|326562218|gb|EGE12546.1| DNA polymerase I [Moraxella catarrhalis 7169] Length = 956 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 372 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 422 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 423 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 479 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 480 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 539 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 540 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 593 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 650 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + Sbjct: 651 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 702 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 703 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 745 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 746 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 805 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 806 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 865 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 866 PLQGSAAEIIKLAMIAVDEVLPK 888 >gi|150009559|ref|YP_001304302.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] gi|149937983|gb|ABR44680.1| DNA polymerase I [Parabacteroides distasonis ATCC 8503] Length = 921 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 85/563 (15%), Positives = 176/563 (31%), Gaps = 105/563 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNA 112 L++ + + N F+ ++ +K ++ + +++A P + Sbjct: 395 ERFSPALQNPKSLKIGQNIKFDILVLRKY---NVKVAGPLFDTMIAHYLLNPELRHGMDY 451 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +EE + + S+ + P + EY D + T + Sbjct: 452 LAETYLKYQTVHIEELIGPKGK-NQLSMRNVPV-----------EQIAEYAAEDADITLK 499 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L P + E L + + G +D + + + KL++ Sbjct: 500 LKNYFAPELKKEGLESLFTTIEMPLIYVLVEMEATGVTLDTVALKQSSGELTASMNKLEQ 559 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 ++ +L + T + LF +D T S + +L + Sbjct: 560 EVYELAGTEF-NINSTKQVGEILFDRLKLDEKAKKTKTGGYSTSEDVLEKLRSKHPIIGK 618 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L E ++ G++ + + TGR S QN+P Sbjct: 619 LLEYRGLKKLLSTYIDALPELINPQTGKIHTSFN-QAVTSTGRLSSTNPNLQNIP----- 672 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGE 395 +R I N AD + IE R++A ++G+ Sbjct: 673 -------------------VRDDLGREIRKAFIPDNADCLFFSADYSQIELRIMAHLSGD 713 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF +G DI+ T AK + P++KV+ + R K + Y G A+ Sbjct: 714 PHMIEAFQSGADIHAATAAKIYGIPVEKVTSDMRRKAKTANFGIIYGISVFGLAERLGIP 773 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 S + + + + SH+ ++ Sbjct: 774 RSESKELIDGYFSTYPRIKEYMEESIKVAKEKGYVETIFKRKRFLSDINSHNAVVRGYAE 833 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540 A+ + G+A +++K A K + +LQ+ +L E Sbjct: 834 RNAINAPIQGSAADIIKLAMVRIYERFEEEGLKSKMILQVHDELNFNVYKEEAE------ 887 Query: 541 RRVANVPRLVMRRHKRDVHIVLP 563 V ++V+ + + + +P Sbjct: 888 ----EVKKIVLEEMENVMKLQVP 906 >gi|319778281|ref|YP_004129194.1| DNA polymerase I [Taylorella equigenitalis MCE9] gi|317108305|gb|ADU91051.1| DNA polymerase I [Taylorella equigenitalis MCE9] Length = 908 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 99/562 (17%), Positives = 183/562 (32%), Gaps = 94/562 (16%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60 +D ET S L VG+ + AW + M +++L+ Sbjct: 335 ALDTETNSLDQLKTRLVGISLSTD------IGKAWYIPVAHQVELGCNQLMKAEVLEAMR 388 Query: 61 --LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L E + N+ ++ +F GI + + T VLA + L+L + Sbjct: 389 SWLESEQKTKILQNAKYDMHVFANE-GIVLKGIK-HDTMVLAYVIDTNQRVGLEALSLKY 446 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 I ++V +Y D + T L L+ Sbjct: 447 LNRKG-----------LSYEEICGKGAKAITFDYVPL-DQATQYACEDADFTFHLLTELL 494 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P + D E + + + G ID +L E+I+ KL+ +I L Sbjct: 495 PKLEGFEGLKFIYDLEMQVLQVLFDMERVGVLIDSSKLLSQSEIISCRLSKLESEIFNLA 554 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF ++ + + S + + +LA D + + Sbjct: 555 GEEF-NINSPKQLSEILFTKLKLETQGKTRTGVIST-NEDALEKLALDHPIAVHLLEYRS 612 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L ++ GR+ +GR S QN+P + Sbjct: 613 LSKLKSTYTDKLPTMINKVTGRVHTVFSQTTV-LSGRLSSFDPNLQNIPIRNED------ 665 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR +A +G KL+ AD + +E R++A I+ ++ +KAF Sbjct: 666 ------------------GRQVRQAFVAEDGFKLMSADYSQVELRLMAHISNDEGMLKAF 707 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLD 458 G DI+ +T ++ F P+ +V QR K + L Y GA Sbjct: 708 KEGADIHRSTASEVFGVPLSEVDDSQRRAAKAINFGLIYGMGAFALANNLGISRETAQNY 767 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDK 497 + ++ F D + ++ + A+ Sbjct: 768 IYKYFDRFPKVRKFMDDIKIQASQDGYVETIYGRRIYIPGIQDSKGARKAALERVAINAP 827 Query: 498 LIGTACELVKKAWRAKHQGVLQ 519 + G+A +++K A + H+ + Q Sbjct: 828 VQGSAADIIKMAMISVHKWISQ 849 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 11/72 (15%) Query: 602 VQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 VQ + DI+ M + K I+L VHDE+V E ++ + L LM Sbjct: 828 VQGSAADIIKMAMISVHKWISQNKLNSRIILQVHDELVLEVHESEIEILKLKLPKLMEDV 887 Query: 655 PSWAK-GLPLKA 665 AK +PL+A Sbjct: 888 ---AKLDVPLEA 896 >gi|255693278|ref|ZP_05416953.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] gi|260620957|gb|EEX43828.1| DNA polymerase type I [Bacteroides finegoldii DSM 17565] Length = 930 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 82/581 (14%), Positives = 173/581 (29%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDL 57 L +D ET +P+ A + +++ + + ++ Sbjct: 358 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPANQEETLKIVNEF 407 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E+ + V N ++ I+ + + K + +++A P + Sbjct: 408 RPVFENESSLKVGQNIKYDMIVLQNY---GVEVKGPLFDTMIAHYVLQPELRHGMDYLAE 464 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + Y D + T +L Sbjct: 465 IYLHYQTIHIDE---LIGPKGKNQKNMRDLAPKDV---------YRYACEDADVTLKLKN 512 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + ++ ++++++I Sbjct: 513 VLEKELKENGTERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTEQMERIEKEIY 572 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + + LF I T + + S + L + Sbjct: 573 DLAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 631 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 632 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 684 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 685 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 726 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + +V + R K + Y G A+ Sbjct: 727 DAFLSNHDIHAATAAKIYKIGLKEVDSDMRRKAKTANFGIIYGISVFGLAERMNVERKEA 786 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 787 KELIDGYFETYPGVKAYMDQSIRVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 846 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 847 NAPIQGSAADIIKVAMARIYQRFRAEGIKTKMILQVHDELN 887 >gi|326572008|gb|EGE22010.1| DNA polymerase I [Moraxella catarrhalis BC8] Length = 956 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 372 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 422 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 423 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 479 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 480 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 539 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 540 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 592 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 593 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 650 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + Sbjct: 651 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 702 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 703 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 745 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 746 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 805 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 806 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 865 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 866 PLQGSAAEIIKLAMIAVDEVLPK 888 >gi|326567172|gb|EGE17294.1| DNA polymerase I [Moraxella catarrhalis BC1] Length = 959 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 705 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 706 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891 >gi|285016940|ref|YP_003374651.1| DNA polymeraseIprotein [Xanthomonas albilineans GPE PC73] gi|283472158|emb|CBA14665.1| probable dna polymeraseIprotein [Xanthomonas albilineans] Length = 922 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 97/555 (17%), Positives = 183/555 (32%), Gaps = 106/555 (19%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A + + PV+L DR + A + LL+ D V + ++ + ++ Sbjct: 373 HADYLPLGHDYPGAPVQL-DRVQALAALAPLLE---DPAKRKVGQHGKYDLHVLRRHGVQ 428 Query: 87 DIPSKRWICTSVLARTNGLPSS-LKNACLA---LNFSEHLTKMEEGKALIAR-FCKGSID 141 T + + +S LA L + + GK F + +ID Sbjct: 429 VHGYAD--DTMLESFVLNSTASRHDMDSLAKRYLGYDTVKYEDVAGKGAKQIAFSQVAID 486 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190 D T Y D + T L + L D E L + Sbjct: 487 ----DAT------------GYAAEDADITLRLHRALSAQLDAEPALARVYREIEMPLVPV 530 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 I G +D+ + K ++++Q + V L + L+ LF Sbjct: 531 LTRIEANGVCVDIAELRKQSQVLSQRMLAAQQKAVALAGRSF-NLDSPKQLQAVLFDELK 589 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + + + S + + +A L R+ + KL + L E V+ GR Sbjct: 590 LPALLKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPETGR 648 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + GA+ TGR S QN+P + + Sbjct: 649 VHTSYHQAGAA-TGRLSSSDPNLQNIPIRTED------------------------GRRI 683 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G+KL+ D + IE R++A ++ + ++AF+ G D++ T A+ F +++V Sbjct: 684 RRAFVAPPGRKLIACDYSQIELRIMAHLSEDPGLLRAFSQGVDVHRATAAEVFGRTLEQV 743 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475 S +R K + L Y A+ + + + F + Sbjct: 744 SANERRAAKAINFGLMYGMSAFGLARNLGIGRGEAQDYVALYFSRYPAVRDFMERMREQA 803 Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW--------- 510 + ++ A+ + GTA +++K+A Sbjct: 804 RTQGYVETLFGRRLYLNDINAKQQGLRAGAERAAINAPMQGTAADIIKRAMVSVDTWLQD 863 Query: 511 -RAKHQGVLQLWKDL 524 RA+ +LQ+ +L Sbjct: 864 HRARALMILQVHDEL 878 >gi|284035476|ref|YP_003385406.1| DNA polymerase I [Spirosoma linguale DSM 74] gi|283814769|gb|ADB36607.1| DNA polymerase I [Spirosoma linguale DSM 74] Length = 1024 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 90/530 (16%), Positives = 184/530 (34%), Gaps = 85/530 (16%) Query: 31 TLCAYAWDDE---PVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 AY + PV DR E A+ + T+ V N ++ ++ KK G++ Sbjct: 472 LSFAYRAGEAFYVPVP-ADRAEAQAIVDQFKPVFENPTIEKVGQNLKYDLLMLKKY-GVE 529 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + K + T + +A+ + + E +ALI + KG + D Sbjct: 530 VQGKLF-DTMIAHYLIEPEMRHNMDMMAMTYLNYSP--VEIEALIGKKGKGQLTMRDVDI 586 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDR 197 + +Y D + T +L P + E L + + Sbjct: 587 QKV---------VDYAGEDADITLQLKHAFAPRLEKDNLHKLFDQVEMPLVQVLTDLELE 637 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +ID + + +L + + +++ ++I ++ + L LF +D Sbjct: 638 GIKIDTNALSELSATLEVDMRQVQQEIFEIAGESF-NIGSPKQLGEVLFDKLKLDKNAKK 696 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQF 311 T + +++L + + R ++KL + L +S GR+ + Sbjct: 697 TKTGQYATGEEILSKLEAEHEIARKILDYRELIKLKNTYVDALPLLISKRTGRIHTSFN- 755 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370 + TGR S QN+P + +R + Sbjct: 756 QAVAATGRLSSTNPNLQNIPIRT------------------------PRGQEIRKAFVPR 791 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 ++ AD + IE R++A +G+ ++AF NG DI+ T +K F+ +D+V+ + R Sbjct: 792 GPEFVIMSADYSQIELRIMAAFSGDQTMLEAFNNGVDIHTQTASKVFHVGLDEVTSDMRR 851 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------ 480 K + + Y G A+ K G ++++ + + D ++ Sbjct: 852 KAKTINFGIIYGISSFGLAQRLKIPRKEAGQIIEEYFAGFPAVKDYIDQCIEKARGFGYA 911 Query: 481 ---------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + + AV + G+A +++K A H+ Sbjct: 912 ETILGRRRYLRDINSRNQTDRMFAERNAVNAPIQGSAADMLKIAMIQIHE 961 >gi|296113895|ref|YP_003627833.1| DNA polymerase I [Moraxella catarrhalis RH4] gi|295921589|gb|ADG61940.1| DNA polymerase I [Moraxella catarrhalis RH4] Length = 959 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 197/563 (34%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 543 QDKTAAQLLYH-------LEMPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRT------- 705 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 706 -----------------DTGRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891 >gi|298485205|ref|ZP_07003298.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160193|gb|EFI01221.1| DNA polymerase I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 921 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 85/554 (15%), Positives = 183/554 (33%), Gaps = 97/554 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + T+ + + I+ Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470 Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192 A + A + G Y + + T L + L+D E L + Sbjct: 471 KGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589 Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR+ Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 + R K + L Y AK + ++ + + +A+ Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++KKA A + Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863 Query: 515 ----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 864 GLDARVILQVHDEL 877 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|33602215|ref|NP_889775.1| DNA polymerase I [Bordetella bronchiseptica RB50] gi|33576653|emb|CAE33731.1| DNA polymerase I [Bordetella bronchiseptica RB50] Length = 904 Score = 264 bits (674), Expect = 5e-68, Method: Composition-based stats. Identities = 98/526 (18%), Positives = 174/526 (33%), Gaps = 97/526 (18%) Query: 49 EQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +P D L +L D + H++ ++ +F G+ + T + A Sbjct: 371 AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANE-GVSLAGVA-EDTMLQAYVL 428 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGE 161 + LA F G++ + C +D L G Sbjct: 429 ESHRGVGLNDLAQRFL--------GRSGVNYEDLCGKGAKQIGFDEVAV------ALAGH 474 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWL----------LDQTINDRGYRIDLDLVLKLQE 211 Y D + T +L + L P + L + + G ++D + + Sbjct: 475 YSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSH 534 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + QE L++ +L + L LF G+ +V + G S ++ Sbjct: 535 KLGQEMLALEQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPST-DEEVLS 592 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 +LA+D L ++ + KL + L ++ GR+ A TGR + Sbjct: 593 KLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYS-QAAVITGRLASSDP 651 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + + VR IA G KL+ AD + IE Sbjct: 652 NLQNIPVRTEA------------------------GRRVREAFIAEQG-KLLSADYSQIE 686 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444 R++A ++ + +AFA GEDI+ T ++ F P+ +V EQR K + L Y G Sbjct: 687 LRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV 746 Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------- 488 A + ++ + + D + + + Sbjct: 747 FGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRA 806 Query: 489 --------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + GTA +L+K A A +Q W D Sbjct: 807 ASGPRRQGAERAAINAPMQGTAADLIKMAMVA-----VQDWLDAER 847 >gi|88811281|ref|ZP_01126537.1| DNA polymerase I [Nitrococcus mobilis Nb-231] gi|88791820|gb|EAR22931.1| DNA polymerase I [Nitrococcus mobilis Nb-231] Length = 898 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 95/576 (16%), Positives = 188/576 (32%), Gaps = 114/576 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT----------EQSAMPSD 56 D+ET S Y + A I ++A + E+ + Sbjct: 325 DLETTSLN---------YMD-AEIVGLSFAVEPARAAYVPVAHIGQGVSPQLERGHVLEQ 374 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL 114 L L D + N ++ + DI + ++L + L Sbjct: 375 LRPLLEDPRRAKLGQNLKYDMSVLAHY---DIALRGVRFDTMLESYILDSTATRHDMDSL 431 Query: 115 ALNFSEHLT---KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 AL + H T + GK F + +I + EY D + Sbjct: 432 ALKYLGHRTIKFEDVAGKGAKQLTFDQVAI----------------ERATEYAAEDADIA 475 Query: 171 RELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L P E L + + G + +L+ +AQ + Sbjct: 476 LRLHRVLYPKLRQLPGPERVFHAIEMPLLPVLSRMERTGVLVSRELLAAQSAELAQRLAE 535 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 ++ + + + ++ L+ G+ ++ + S + S + +LA L Sbjct: 536 IEASVYRAAGCEF-NLGSPKQIQAVLYDRQGLPVLAKTPKGAPST-AESVLQELAATYPL 593 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 R+ A+ KL + L + GR+ + + + TGR S QN+P + Sbjct: 594 PRMILEHRALAKLKSTYTDKLPLLIHPRTGRVHTSYR-QAVAATGRLSSSDPNLQNIPVR 652 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G +L+ D + +E R++A + Sbjct: 653 S------------------------PEGRRIRRGFIARQGYRLLAVDYSQVELRIMAHFS 688 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 G++ +AFA GEDI+ T A+ F T +++V+ EQR K + L Y A+ Sbjct: 689 GDERLHRAFAAGEDIHRATAAEVFATALEQVTAEQRRAAKAINFGLIYGMSAYGLARQLG 748 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 ++++ + F + + + + + Sbjct: 749 IERDAAQHYVERYFERYPGVKAFMERIRREARERQYVETVFGRRLYLPEINASNAQRRQA 808 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 A+ + G+A +++K+A Q + +D+ Sbjct: 809 AERTAINAPMQGSAADIIKRAMVRVDQWLQSEREDV 844 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 6/50 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 Q + DI+ M + +VL VHDE+V E P +V Sbjct: 819 QGSAADIIKRAMVRVDQWLQSEREDVFMVLQVHDELVFEVPTPDVQAVAE 868 >gi|33596490|ref|NP_884133.1| DNA polymerase I [Bordetella parapertussis 12822] gi|33566259|emb|CAE37170.1| DNA polymerase I [Bordetella parapertussis] Length = 904 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 98/526 (18%), Positives = 174/526 (33%), Gaps = 97/526 (18%) Query: 49 EQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +P D L +L D + H++ ++ +F G+ + T + A Sbjct: 371 AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANE-GVSLAGVA-EDTMLQAYVL 428 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGE 161 + LA F G++ + C +D L G Sbjct: 429 ESHRGVGLNDLAQRFL--------GRSGVNYEDLCGKGAKQIGFDEVAV------PLAGH 474 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWL----------LDQTINDRGYRIDLDLVLKLQE 211 Y D + T +L + L P + L + + G ++D + + Sbjct: 475 YSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSH 534 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + QE L++ +L + L LF G+ +V + G S ++ Sbjct: 535 KLGQEMLALEQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPST-DEEVLS 592 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 +LA+D L ++ + KL + L ++ GR+ A TGR + Sbjct: 593 KLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMINPATGRVHTHYS-QAAVITGRLASSDP 651 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + + VR IA G KL+ AD + IE Sbjct: 652 NLQNIPVRTEA------------------------GRRVREAFIAEQG-KLLSADYSQIE 686 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444 R++A ++ + +AFA GEDI+ T ++ F P+ +V EQR K + L Y G Sbjct: 687 LRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV 746 Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------- 488 A + ++ + + D + + + Sbjct: 747 FGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRA 806 Query: 489 --------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + GTA +L+K A A +Q W D Sbjct: 807 ASGPRRQGAERAAINAPMQGTAADLIKMAMVA-----VQDWLDAER 847 >gi|33592382|ref|NP_880026.1| DNA polymerase I [Bordetella pertussis Tohama I] gi|33572027|emb|CAE41550.1| DNA polymerase I [Bordetella pertussis Tohama I] Length = 904 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 99/526 (18%), Positives = 174/526 (33%), Gaps = 97/526 (18%) Query: 49 EQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +P D L +L D + H++ ++ +F G+ + T + A Sbjct: 371 AGDQLPRDEVIARLRGWLEDAGRAKLLHHAKYDTHVFANE-GVSLAGVA-EDTMLQAYVL 428 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGE 161 + LA F G++ + C +D L G Sbjct: 429 ESHRGVGLNDLAQRFL--------GRSGVNYEDLCGKGAKQIGFDEVAV------PLAGH 474 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWL----------LDQTINDRGYRIDLDLVLKLQE 211 Y D + T +L + L P + L + + G ++D + + Sbjct: 475 YSCEDSDFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSH 534 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + QE L++ +L + L LF G+ +V + G S ++ Sbjct: 535 KLGQEMLALEQRAYELAGQPF-NLNSPKQLGEILFGRMGLPVVRKTAGGAPST-DEEVLS 592 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 +LA+D L ++ + KL + L +S GR+ A TGR + Sbjct: 593 KLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMISPATGRVHTHYS-QAAVITGRLASSDP 651 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + + VR IA G KL+ AD + IE Sbjct: 652 NLQNIPVRTEA------------------------GRRVREAFIAEQG-KLLSADYSQIE 686 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444 R++A ++ + +AFA GEDI+ T ++ F P+ +V EQR K + L Y G Sbjct: 687 LRIMAHVSDDANLQRAFAAGEDIHRATASEVFGVPLAEVGAEQRRAAKAINFGLIYGMGV 746 Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------- 488 A + ++ + + D + + + Sbjct: 747 FGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQLPDIRA 806 Query: 489 --------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A+ + GTA +L+K A A +Q W D Sbjct: 807 ASGPRRQGAERAAINAPMQGTAADLIKMAMVA-----VQDWLDAER 847 >gi|117926540|ref|YP_867157.1| DNA polymerase I [Magnetococcus sp. MC-1] gi|117610296|gb|ABK45751.1| DNA polymerase I [Magnetococcus sp. MC-1] Length = 911 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 100/536 (18%), Positives = 175/536 (32%), Gaps = 99/536 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPS-DLLQYLR----DETVMCVAHNSLFERILFKK 82 A +A D P + +P D+L L+ + N ++ +FK+ Sbjct: 362 AYYIPVGHALDAAP--------EGQLPRADVLAALKPLLESPEIGKTGQNIKYDYQIFKR 413 Query: 83 TLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 I + + + + L A A N + E G+ I + Sbjct: 414 Y---HITMQGIERDSMLYSYL------LYGANRAHNLDA-IATEELGRTTIKF---EDVA 460 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-----------GERDLWLL 190 R + V L Y D E T + + P D ER L + Sbjct: 461 GKGRKRIRFDQVPL-HLAAPYACEDAEVTWQAAASMAPNLDREPGLKRLYETIERPLIPV 519 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +D D++ + ++ R +L E+I +L + + T L LF G Sbjct: 520 LAEMEYAGVLVDRDVLSTMSADFSKRRARLVEEIHELAGEVF-NVNSTQQLGHILFEKMG 578 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLI-LNRLASSGSAILKL-----NTLSEAVSS-DG 303 I ++ S +++LA D + + + ++ KL + L + G Sbjct: 579 IKGGKRTKSGF--STDVSVLSKLADDGEKIPQQVLAYRSLTKLQSTYTDALVALIHPYTG 636 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + + TGR S QN+P + Sbjct: 637 RVHTSYN-QAVTLTGRLSSSDPNLQNIPIRT------------------------EEGRA 671 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R+ IA G L+ AD + IE RVLA + +AF G DI+ T A+ F P+ + Sbjct: 672 IRTAFIAPAGWSLLAADYSQIELRVLAHMGNVSRLKEAFHAGLDIHAATAAELFGVPLAQ 731 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V+ E R + K + L Y AK + + + D + Sbjct: 732 VTGEHRRMAKTINFGLVYGMSPFGLAKRLGIQNNEARAYMDLYFARYDGVRQHMDATIRD 791 Query: 480 SH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + +++ A+ L G+A +L+K A H Sbjct: 792 ARAHGFVETLGGRRCPIRDINATQRSLREFAERTAINAPLQGSASDLIKLAMIRLH 847 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 603 QAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLCS-----LM 651 Q + D++ M G+ +VL VHDE+V E PD +V + +M Sbjct: 832 QGSASDLIKLAMIRLHGALQAGGFKARMVLQVHDELVLEVPDKELAAVKEVVRSCMEGVM 891 Query: 652 TKNPS 656 T + Sbjct: 892 TLSIP 896 >gi|330986810|gb|EGH84913.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M301315] Length = 921 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 86/554 (15%), Positives = 183/554 (33%), Gaps = 97/554 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + T+ + + I+ Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470 Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192 A + A + G Y + + T L + L+D E L + Sbjct: 471 KGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589 Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR+ Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F +D V+ Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELDNVT 743 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 + R K + L Y AK + ++ + + +A+ Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++KKA A + Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863 Query: 515 ----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 864 GLDARVILQVHDEL 877 Score = 44.7 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G + V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELDNVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|257481814|ref|ZP_05635855.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 85/554 (15%), Positives = 184/554 (33%), Gaps = 97/554 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + T+ + + I+ Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470 Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192 A + A + G+Y + + T L + L+D E L + Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589 Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR+ Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 + R K + L Y AK + ++ + + +A+ Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++KKA A + Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863 Query: 515 ----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 864 GLDARVILQVHDEL 877 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|317474651|ref|ZP_07933925.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] gi|316909332|gb|EFV31012.1| DNA polymerase I [Bacteroides eggerthii 1_2_48FAA] Length = 952 Score = 263 bits (673), Expect = 5e-68, Method: Composition-based stats. Identities = 102/588 (17%), Positives = 187/588 (31%), Gaps = 107/588 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSDLL 58 L ID ET +P+ V A AY A DE +K+ ++ Sbjct: 381 LSIDTETTGTEPMEAELVGMSFSNAENR--AYYVPVPANRDEALKIV---------NEFR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 +E M V N ++ I+ + G+ + K + T + LA + Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGKLF-DTMLAHYVLQPELRHNMDYLAEIY 487 Query: 119 SEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + T ++E + K D PP D Y D + T +L L Sbjct: 488 LRYRTIHIDELIGSRGKNQKSMRDLPPEDV------------YRYACEDADVTLKLKNVL 535 Query: 178 IPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L + I G RID + + + E ++++++I L Sbjct: 536 EKELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYAL 595 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 +G + + LF I T + + S + L + Sbjct: 596 ANGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR 655 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR-------- 706 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I +G + AD + IE R++A ++ + I A Sbjct: 707 ----------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMIDA 750 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +G DI+ T AK + I +V+ + R K + Y G A+ Sbjct: 751 FLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVFGLAERMNVSRQEAKE 810 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + + + + D S + ++ A+ Sbjct: 811 LIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 870 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A +Q +LQ+ +L +E Sbjct: 871 PIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKE 918 >gi|295700821|ref|YP_003608714.1| DNA polymerase I [Burkholderia sp. CCGE1002] gi|295440034|gb|ADG19203.1| DNA polymerase I [Burkholderia sp. CCGE1002] Length = 913 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 107/575 (18%), Positives = 194/575 (33%), Gaps = 99/575 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E +A A+ D PV+L + + + L + Sbjct: 339 SFDSETTSLDPMVAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLAKLKPW 394 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + GI++ T + + + LAL Sbjct: 395 LESADHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLESYVLESHRTHDMDSLALRHLG 452 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDC------TRANHVQAWQLFGEYCKRDVEAT 170 K E+ GK F + ++D T H + D Sbjct: 453 VKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDADITLRLHQALYPQIAVENSLD-HVY 511 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 RE+ E + + + G ID + + + IA +L+ +L G Sbjct: 512 REI----------EVPTSRVLRKMERTGVLIDAEKLRQQSGEIATRLIELEGSAYELAGG 561 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + F + ++ + S + +LA+D L ++ + Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVIKKTPSGAPST-DEEVLQKLAEDYPLPKILLEHRGLS 619 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L V+ GR+ + TGR + QN+P + Sbjct: 620 KLKSTYTDKLPRMVNPRTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 668 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G KLV AD + IE R++A I+G++ ++AF+ Sbjct: 669 --------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLMRAFSQ 714 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GEDI+ T ++ FN +VS +QR + KV+ L Y A + + Sbjct: 715 GEDIHRATASEIFNVTPLEVSSDQRRVAKVINFGLIYGMSAFGLASNLGITRDAAKMYID 774 Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAVKDKLI 499 ++ + + D E LW+ + A+ + Sbjct: 775 RYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524 GTA +L+K + A + ++Q+ +L Sbjct: 835 GTAADLIKMSMIAVQNWIEDSKIGTRMIMQVHDEL 869 >gi|330957163|gb|EGH57423.1| DNA polymerase I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 921 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 183/555 (32%), Gaps = 99/555 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ ++ L L D + V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDSVLKTLKPLLEDPGKIKVGQHAKFAINLLANCA--- 416 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 A+ L + T+ + + I+ Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIA 469 Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 A + A + G Y + + T L + L+D E L + Sbjct: 470 GKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVL 529 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304 ++ + T + + + + +LA+ D L ++ ++ KL + L E ++ GR Sbjct: 589 PILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATAAEVFGVELEGV 742 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 +++ R K + L Y AK + ++ + + +A++ Sbjct: 743 TQDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQA 802 Query: 481 HHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWRAKH----- 514 + A+ + GTA +++KKA A + Sbjct: 803 AEQGFVETIFGRRLYLPDINAKNPSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLDA 862 Query: 515 -----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 863 SGLDARVILQVHDEL 877 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V + R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELEGVTQDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M +G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLDASGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|320322196|gb|EFW78292.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. B076] gi|320331847|gb|EFW87785.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 921 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 85/554 (15%), Positives = 184/554 (33%), Gaps = 97/554 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + T+ + + I+ Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470 Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192 A + A + G+Y + + T L + L+D E L + Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589 Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR+ Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 + R K + L Y AK + ++ + + +A+ Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++KKA A + Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863 Query: 515 ----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 864 GLDARVILQVHDEL 877 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|240139017|ref|YP_002963492.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240008989|gb|ACS40215.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 1047 Score = 263 bits (673), Expect = 6e-68, Method: Composition-based stats. Identities = 90/499 (18%), Positives = 163/499 (32%), Gaps = 85/499 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLA 115 L L D + V N ++ + + GID+ T +++ LA Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRPFD--DTMLISYVLDAGKGGHGMDELA 577 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 H A R K + D D A Y D + T L++ Sbjct: 578 RRHLGHQPITFADVAGTGR-NKVTFDHVAIDKATA-----------YAAEDADVTLRLWR 625 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + P ER L + + G ID +++ +L +Q +L+E+I Sbjct: 626 MMKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQ 685 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLIL 279 + + + LF G+ + + + + +LA+ IL Sbjct: 686 EDAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKIL 743 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N S ++L + R+ + A+ TGR S QN+P + Sbjct: 744 NYRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT---- 798 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A GKKL+ AD + IE R+LA IA Sbjct: 799 --------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQL 838 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AF G DI+ T + F +D+++ + R K + + Y G A Sbjct: 839 REAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREE 898 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 ++Q+ + + D + Q S++ + A Sbjct: 899 ASAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQA 958 Query: 494 VKDKLIGTACELVKKAWRA 512 + + GTA +++++A Sbjct: 959 INAPIQGTAADIIRRAMTR 977 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 R Y ++ + + R+ +Q + DI+ M Sbjct: 935 GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 985 Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664 ++L VHDE+V E PD ++ + +M + P A L L+ Sbjct: 986 KLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1030 >gi|71736059|ref|YP_272564.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556612|gb|AAZ35823.1| DNA polymerase I [Pseudomonas syringae pv. phaseolicola 1448A] Length = 921 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 85/554 (15%), Positives = 184/554 (33%), Gaps = 97/554 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + T+ + + I+ Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470 Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192 A + A + G+Y + + T L + L+D E L + Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589 Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR+ Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 + R K + L Y AK + ++ + + +A+ Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++KKA A + Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863 Query: 515 ----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 864 GLDARVILQVHDEL 877 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|237797957|ref|ZP_04586418.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020808|gb|EGI00865.1| DNA polymerase I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 921 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 90/574 (15%), Positives = 187/574 (32%), Gaps = 103/574 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLAN----- 414 Query: 88 IPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 C + +G+ + T+ + + ++ Sbjct: 415 -------CAIGGDQAHGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPVNFQD 467 Query: 145 YDCTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWL 189 A + A + G Y + + T L + LSD E L Sbjct: 468 IAGKGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFETRLAAIPTLQPVLSDIEMPLVP 527 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + I +G +D +L+ + + L+ + + + L + L+ Sbjct: 528 VLARIERQGALVDANLLGIQSVELGDKMTALECEAFAIAGEEF-NLGSPKQLGVILYEKL 586 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-D 302 G+ ++ + T + + + +++LA+ D L ++ ++ KL + L E ++ Sbjct: 587 GMPILSKT-ATGQPSTAEAVLSELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRT 645 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + + TGR S QN+P + Sbjct: 646 GRVHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGR 680 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ Sbjct: 681 RIRQAFVAPKGYKLLAADYSQIELRIMAHLARDEGLLHAFRNDLDVHRATAAEVFGVELE 740 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ + R K + L Y AK + ++ + + +A Sbjct: 741 GVTNDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRA 800 Query: 479 ESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWRAKH--- 514 ++ + A+ + GTA +++KKA A + Sbjct: 801 QAAEQGFVETIFGRRLYLPDINAKNPSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWL 860 Query: 515 -------QGVLQLWKDLTEGFACVVQEGGSISAR 541 + +LQ+ +L + E S R Sbjct: 861 EESGLDARVILQVHDELVLEVREDLVEQISEQIR 894 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELEGVTNDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNPSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VEQISEQ 892 >gi|28198313|ref|NP_778627.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182680952|ref|YP_001829112.1| DNA polymerase I [Xylella fastidiosa M23] gi|28056383|gb|AAO28276.1| DNA polymerase I [Xylella fastidiosa Temecula1] gi|182631062|gb|ACB91838.1| DNA polymerase I [Xylella fastidiosa M23] gi|307579419|gb|ADN63388.1| DNA polymerase I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 923 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 96/584 (16%), Positives = 185/584 (31%), Gaps = 114/584 (19%) Query: 5 FIDIETRSPQPL----------PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 +D ET S P+ +VG AY + + PV+L ++ Sbjct: 346 ALDTETDSLDPMQAVLIGLSFASEVGCAAY------LPFGHDYPGAPVQL----DRGQAL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L L D V V + ++ + ++ + T+G + Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLA 455 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + K + KG+ P Q +Y D + T L Sbjct: 456 RRHLGYETMKY------VDLVGKGAKQIPFSHVGV-------QEATQYAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P + E L + + I G +ID + + K +++ + Sbjct: 503 CVLAPKLLAEPRLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L++ LF + +V + S + + + L R+ Sbjct: 563 AMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEA-LEAIVDQHALPRVI 620 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL L E + GR+ GA+ TGR S QN+P + Sbjct: 621 LEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD- 678 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A +G+KL+ D + IE R++A ++G+ Sbjct: 679 -----------------------GRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AF +G D++ A+ F ID+V+ +R K + L Y A+ Sbjct: 716 LVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRG 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEF 492 + + F + + ++ + Sbjct: 776 EAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 835 Query: 493 AVKDKLIGTACELVKKAW------------RAKHQGVLQLWKDL 524 A+ + GTA +++K+A R + +LQ+ +L Sbjct: 836 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDEL 879 Score = 44.3 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551 A+ ++ G + V R + + F Q G S A+ + Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YLN+ S +R + N +Q + DI Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848 Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M G+ ++L VHDE+V E + + V + + M Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902 >gi|71276059|ref|ZP_00652340.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|170729656|ref|YP_001775089.1| DNA polymerase I [Xylella fastidiosa M12] gi|71163142|gb|EAO12863.1| DNA polymerase A [Xylella fastidiosa Dixon] gi|167964449|gb|ACA11459.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 923 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 96/584 (16%), Positives = 185/584 (31%), Gaps = 114/584 (19%) Query: 5 FIDIETRSPQPL----------PKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 +D ET S P+ +VG AY + + PV+L ++ Sbjct: 346 ALDTETDSLDPMQAVLIGLSFASEVGCAAY------LPFGHDYPGAPVQL----DRGQAL 395 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L L D V V + ++ + ++ + T+G + Sbjct: 396 ALLQPLLEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHDMDTLA 455 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + K + KG+ P Q +Y D + T L Sbjct: 456 RRHLGYETMKY------VDLVGKGAKQIPFSHVGV-------QEATQYAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P + E L + + I G +ID + + K +++ + Sbjct: 503 CVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L++ LF + +V + S + + + L R+ Sbjct: 563 AMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEA-LEAIVDQHALPRVI 620 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL L E + GR+ GA+ TGR S QN+P + Sbjct: 621 LEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD- 678 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A +G+KL+ D + IE R++A ++G+ Sbjct: 679 -----------------------GRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AF +G D++ A+ F ID+V+ +R K + L Y A+ Sbjct: 716 LVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRG 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEF 492 + + F + + ++ + Sbjct: 776 EAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 835 Query: 493 AVKDKLIGTACELVKKAW------------RAKHQGVLQLWKDL 524 A+ + GTA +++K+A R + +LQ+ +L Sbjct: 836 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDEL 879 Score = 44.7 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551 A+ ++ G + V R + + F Q G S A+ + Sbjct: 729 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YLN+ S +R + N +Q + DI Sbjct: 789 SGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848 Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M G+ ++L VHDE+V E + + V + + M Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902 >gi|313157640|gb|EFR57054.1| DNA-directed DNA polymerase [Alistipes sp. HGB5] Length = 958 Score = 263 bits (672), Expect = 6e-68, Method: Composition-based stats. Identities = 96/531 (18%), Positives = 178/531 (33%), Gaps = 91/531 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + ++ + + N F+ ++ + LG++I +++ T +L S LA Sbjct: 434 VRPLFENDRIAKIGQNIKFDLMVL-RQLGLEIRGRKY-DTMILHYLLDPESRHNMNALAE 491 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + K E + LI + K + + EY D + T L Sbjct: 492 KYLNY--KPIEIETLIGKGSKQ----------LTMDLVNVERVKEYAAEDADVTLRLKHA 539 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E + + I G RID + + +++ +L+ I + Sbjct: 540 LYPQIEELGLQHLYFEIEEPMIAVLADIEMAGVRIDSEALAVYSVELSRRLAELEAAICE 599 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF I T + + A + L Sbjct: 600 EAGESQLNINSARQLGEVLFGKMRIAEKPKMTKTKQFCTDEDYLQSFAHKHRIVDLILEY 659 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL L + V+ GR+ + + TGR S QN+P +E Sbjct: 660 RGVKKLLSTYVEALPQLVNRRTGRIHTSFN-QAVTATGRLSSTNPNLQNIPVRE------ 712 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I S L+ AD + +E R++A ++G++ I Sbjct: 713 ------------------EMGRRIRRAFIPSDEEHLLLSADYSQVELRLMAHLSGDESLI 754 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AFA+GEDI+ T AK FN +D+V+ E+R K + Y G ++ + Sbjct: 755 AAFAHGEDIHAATAAKLFNKTLDEVTSEERRRAKTANFGIIYGISAFGLSQRLEIPRKEA 814 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAV 494 + + + + D A++ H+ + AV Sbjct: 815 KEIIDGYFASYPKVQEYMDNVVAKAKEEGFVSTIFGRRRYLNDIASHNAIARGLAERNAV 874 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 + G+A +++K A H+ +LQ+ +L QE Sbjct: 875 NAPIQGSAADIMKIAMINVHRRFAAEGIRSKVILQVHDELVVDMLRSEQER 925 >gi|218131732|ref|ZP_03460536.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] gi|217986035|gb|EEC52374.1| hypothetical protein BACEGG_03353 [Bacteroides eggerthii DSM 20697] Length = 952 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 102/588 (17%), Positives = 187/588 (31%), Gaps = 107/588 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAY-----AWDDEPVKLWDRTEQSAMPSDLL 58 L ID ET +P+ V A AY A DE +K+ ++ Sbjct: 381 LSIDTETTGTEPMEAELVGMSFSNAENR--AYYVPVPANRDEALKIV---------NEFR 429 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 +E M V N ++ I+ + G+ + K + T + LA + Sbjct: 430 PLYENENSMKVGQNIKYDMIVLQNY-GVQVKGKLF-DTMLAHYVLQPELRHNMDYLAEIY 487 Query: 119 SEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + T ++E + K D PP D Y D + T +L L Sbjct: 488 LRYRTIHIDELIGSRGKNQKSMRDLPPEDV------------YRYACEDADVTLKLKNVL 535 Query: 178 IPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L + I G RID + + + E ++++++I L Sbjct: 536 EKELKKQSAEHLFYEIEMPLVPVLVNIESNGVRIDTEALKQSSEHFTLRLQEIEKEIYAL 595 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 +G + + LF I T + + S + L + Sbjct: 596 ANGETFNIASPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHAIIGKILEYR 655 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 656 GLKKLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR-------- 706 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I +G + AD + IE R++A ++ + I A Sbjct: 707 ----------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSQDRNMIDA 750 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +G DI+ T AK + I +V+ + R K + Y G A+ Sbjct: 751 FLSGYDIHAATAAKIYKVDISEVTTDMRRKAKTANFGIIYGISVFGLAERMNVSRQEAKE 810 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + + + + D S + ++ A+ Sbjct: 811 LIDGYFETYPQIKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 870 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A +Q +LQ+ +L +E Sbjct: 871 PIQGSAADIIKVAMSLIYQRIQSNNLKAKMILQVHDELNFSVPEAEKE 918 >gi|325267196|ref|ZP_08133863.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] gi|324981359|gb|EGC17004.1| DNA-directed DNA polymerase I [Kingella denitrificans ATCC 33394] Length = 984 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 95/589 (16%), Positives = 189/589 (32%), Gaps = 103/589 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE---QSAMPSDLLQ--- 59 +D ET S +P+ A + + A+ + +D+ Sbjct: 413 LDTETTSLEPMK----------AQLVGISIAFGAGDAAYIPVAHTFAEQLDWTDIKSSLQ 462 Query: 60 -YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 +L + + + N +++ +F GI + + + L+ + Sbjct: 463 PFLENPQLGKIGQNMKYDQHVFANH-GIALQGIS-GDAMLASYIVESHLGHGLDELSERW 520 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + T E C P+ + EY +D + + + L Sbjct: 521 LQLPTITYES------LCGKGAKQIPFADVPLD------KAAEYACQDADFALRIEQHLR 568 Query: 179 ---------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E + + + G ID + + + + +E +L+ + L Sbjct: 569 TQMDDKQLAMYQELELPVAQVLFAMERNGVFIDSNELAQQSAQLGKELWQLENEAFALAG 628 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSA 288 + L+ LF G+ + + S S + +LA D L +L + Sbjct: 629 KPF-NLNSPKQLQDILFNQMGLPTKGIKKTAGGSYSTDESVLEKLADDFPLPKLILQHRS 687 Query: 289 ILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L E + + GR+ + TGR + QN+P + Sbjct: 688 LAKLKSTYTDKLPEMILPATGRVHTNYA-QAVAITGRLASNNPNLQNIPIRT-------- 738 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR A G+ +V AD + IE R++A ++G+ AF Sbjct: 739 ----------------EQGRRVRRAFCAPEGQMMVSADYSQIELRIMAHLSGDPTLQAAF 782 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 N ED++ T A+ F P + ++ EQR K + L Y AK + Sbjct: 783 QNNEDVHRRTAAEVFGVPPEHITAEQRRYAKTINFGLIYGMSSFGLAKALGIDNMSAEMF 842 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQY--PEFAVKD------------------KL 498 ++++ + + + + ++ L + + D + Sbjct: 843 IKRYFARYTGVAEYMERTKEQARSLGYVETLFGRRLYLPDIHGSAIRRAAAERAAINAPM 902 Query: 499 IGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 GTA +L+K+A A Q QL + + V E + Sbjct: 903 QGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPEDELAHIK 951 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 19/77 (24%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPS 656 Q + D++ M ++ +V+ VHDE+V + P+ L + + P Sbjct: 903 QGTASDLIKRAMIKVQAALAAEQSSAQLVMQVHDELVLQVPE------DELAHIKAQLPQ 956 Query: 657 WAKG-------LPLKAE 666 W +PL AE Sbjct: 957 WMSDVGEGVLAVPLLAE 973 >gi|153807182|ref|ZP_01959850.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] gi|149130302|gb|EDM21512.1| hypothetical protein BACCAC_01460 [Bacteroides caccae ATCC 43185] Length = 949 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 85/589 (14%), Positives = 176/589 (29%), Gaps = 108/589 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57 L +D ET +P+ A + +++ + V + D+ E + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSIAENEAFYVPVPADQEEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + + K + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLQNY---GVQVKGPLFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + Y D + T +L Sbjct: 484 IYLRYQTIHIDE---LIGPKGKNQKNMRDLAPKDV---------YRYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + + ++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSAHFTAQMENIEKEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLRIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLQDVGSDMRRKAKTANFGIIYGISVFGLAERMNVERKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 806 KELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQ 533 + G+A +++K A +Q +LQ+ +L + Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELNFSVPVEEK 914 >gi|289627990|ref|ZP_06460944.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646458|ref|ZP_06477801.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 2250] gi|330866583|gb|EGH01292.1| DNA polymerase I [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 921 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 85/554 (15%), Positives = 183/554 (33%), Gaps = 97/554 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPGKTKVGQHAKFAINLLANC---A 416 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + T+ + + I+ Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470 Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192 A + A + G Y + + T L + L+D E L + Sbjct: 471 KGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589 Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR+ Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 + R K + L Y AK + ++ + + +A+ Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++KKA A + Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863 Query: 515 ----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 864 GLDARVILQVHDEL 877 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|331009449|gb|EGH89505.1| DNA polymerase I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 921 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 85/554 (15%), Positives = 183/554 (33%), Gaps = 97/554 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + T+ + + I+ Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470 Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQ 192 A + A + G+Y + + T L + L+D E L + Sbjct: 471 KGAKQLTFDQIAIEQAGDYAAEEADLTLRLHEVFEARLAAIPTLQPVLNDIEMPLVPVLA 530 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589 Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR+ Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + TGR S QN+P + +R Sbjct: 649 HTSY-HQAVGVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-- 479 + R K + L Y AK + ++ + + +A+ Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 480 -------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------ 514 + + ++ A+ + GTA +++KKA A + Sbjct: 804 EQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863 Query: 515 ----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 864 GLDARVILQVHDEL 877 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|288925939|ref|ZP_06419869.1| DNA polymerase type I [Prevotella buccae D17] gi|288337363|gb|EFC75719.1| DNA polymerase type I [Prevotella buccae D17] Length = 920 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 89/591 (15%), Positives = 185/591 (31%), Gaps = 110/591 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV--KLWDRTEQS--AMPSDL 57 L +D ET S + +A + ++A ++ + + + + Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVVIPANREEALKIVAIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACL 114 D ++ V N ++ + + + + +++A P ++ Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVLRHY---GVEVAGPMFDTMIAHYLLQPELRHNMDYMAE 454 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +EE LI + + T EY D + T L Sbjct: 455 V-YLGYRTVHIEE---LIGPRGRNQKNMRDLSPTDI---------YEYACEDADITLRLK 501 Query: 175 KRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P D E L + + G +D + + + E+ + +++ I Sbjct: 502 NVLEPKLDEAGVARLFRDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTAIEQHI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + + LF I T + + S + QL + Sbjct: 562 YELAGEQF-NISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEIL 620 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 621 NYRGLKKLLSTYVDALPKLINPRTGRIHTSFN-QTVTATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I G AD + IE R++A ++ ++ Sbjct: 673 -----------------VRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+AF G DI+ T A+ ++ I +V+ +R K + Y G A+ Sbjct: 716 IEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMDISNGE 775 Query: 455 CGLDL----------QQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFA 493 + + + + K T+ + + SH+ ++ A Sbjct: 776 ARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGFAERNA 835 Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + + G+ +++K A H+ +LQ+ +L +E Sbjct: 836 INAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKE 886 >gi|5002704|emb|CAB44358.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1052 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 87/498 (17%), Positives = 165/498 (33%), Gaps = 83/498 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D + V N ++ + + GID+ T +++ L + + Sbjct: 526 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVTPFD--DTMLISYV--LDAGKGGHGMDE 580 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 HL A +A + + +A Y D + T L++ Sbjct: 581 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 631 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + P ER L + + G ID +++ +L +Q +L+E+I + Sbjct: 632 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 691 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280 + + LF G+ + + + + +LA+ ILN Sbjct: 692 DAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 749 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++L + R+ + A+ TGR S QN+P + Sbjct: 750 YRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 803 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A GKKL+ AD + IE R+LA IA Sbjct: 804 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 844 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF G DI+ T + F +D+++ + R K + + Y G A Sbjct: 845 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 904 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++Q+ + + D + Q S++ + A+ Sbjct: 905 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 964 Query: 495 KDKLIGTACELVKKAWRA 512 + GTA +++++A Sbjct: 965 NAPIQGTAADIIRRAMTR 982 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 R Y ++ + + R+ +Q + DI+ M Sbjct: 940 GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 990 Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664 ++L VHDE+V E PD ++ + +M + P A L L+ Sbjct: 991 RLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1035 >gi|254561612|ref|YP_003068707.1| DNA polymerase I [Methylobacterium extorquens DM4] gi|254268890|emb|CAX24851.1| DNA polymerase I [Methylobacterium extorquens DM4] Length = 1047 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 87/498 (17%), Positives = 165/498 (33%), Gaps = 83/498 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D + V N ++ + + GID+ T +++ L + + Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVTPFD--DTMLISYV--LDAGKGGHGMDE 575 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 HL A +A + + +A Y D + T L++ Sbjct: 576 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 626 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + P ER L + + G ID +++ +L +Q +L+E+I + Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280 + + LF G+ + + + + +LA+ ILN Sbjct: 687 DAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 744 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++L + R+ + A+ TGR S QN+P + Sbjct: 745 YRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 798 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A GKKL+ AD + IE R+LA IA Sbjct: 799 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF G DI+ T + F +D+++ + R K + + Y G A Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 899 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++Q+ + + D + Q S++ + A+ Sbjct: 900 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 959 Query: 495 KDKLIGTACELVKKAWRA 512 + GTA +++++A Sbjct: 960 NAPIQGTAADIIRRAMTR 977 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 R Y ++ + + R+ +Q + DI+ M Sbjct: 935 GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 985 Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664 ++L VHDE+V E PD ++ + +M + P A L L+ Sbjct: 986 RLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1030 >gi|90426328|ref|YP_534698.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] gi|90108342|gb|ABD90379.1| DNA polymerase I [Rhodopseudomonas palustris BisB18] Length = 1021 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 92/500 (18%), Positives = 160/500 (32%), Gaps = 87/500 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L V+ + N F +L + GI + + + A G + +A Sbjct: 493 EALRPILESPGVLKIGFNIKFTAVLLAQH-GITLQNADDVQLMSYALDAGRHAHGLDALA 551 Query: 115 ALNFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 E F + +ID Y D + Sbjct: 552 ETWLGHKTLSYGEVIGSGKAKLSFDQVAIDRATC----------------YAAEDADVAL 595 Query: 172 ELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L++ L P ER L + + RG ID ++ +L AQ +++ Sbjct: 596 RLWRVLKPRLVAERMTTVYETLERPLIGVLARMERRGISIDRAVLARLSGDFAQTAARIE 655 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILN 280 +I ++ I + L LF + ++ T S + +LA+ Sbjct: 656 AEIREIAGEEI-NIGSPKQLGDILFGKMQLPGGSKTK-TGAWSTSAQVLEELAEQGHEFP 713 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 R + KL + L V T A+ TGR S QN+P + Sbjct: 714 RKILDWRQVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTE 773 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA+ G KLV AD + IE R+LA IA Sbjct: 774 D------------------------GRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADI 809 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 +AF +G DI+ T ++ F PI + E R K + + Y G A Sbjct: 810 PVLKQAFQDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLGIP 869 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 G ++++ + + D + ++ + ++ Sbjct: 870 REEAGAYIKKYFERFPGIRAYMDATRDFCRAHGFVETLFGRKCHYPDIKASNASVRAFNE 929 Query: 491 EFAVKDKLIGTACELVKKAW 510 A+ +L GTA +++++A Sbjct: 930 RAAINARLQGTAADIIRRAM 949 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 + R+ Y D+K N + +L Q + DI+ M Sbjct: 903 FVETLFGRKCHYPDIKAS----NASVRAFNERAAINARL-----QGTAADIIRRAMVRME 953 Query: 619 KN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655 ++L VHDE++ E D ++ + +M P Sbjct: 954 DALAEKKLSAQMLLQVHDELIFEVADDEVAATLPVVQQVMQDAP 997 >gi|311105001|ref|YP_003977854.1| DNA polymerase I [Achromobacter xylosoxidans A8] gi|310759690|gb|ADP15139.1| DNA polymerase I [Achromobacter xylosoxidans A8] Length = 905 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 94/540 (17%), Positives = 180/540 (33%), Gaps = 97/540 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L +L D T + H++ ++ +F GI + T + A + LA Sbjct: 385 LKPWLEDATRAKLLHHAKYDAHVFANE-GIKLAGI-TEDTMLQAYVLESHRGVGLNDLAQ 442 Query: 117 NFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + G++ ++ C +D + G Y D + T +L Sbjct: 443 RYL--------GRSGVSYEDLCGKGAKQIGFDEVAVD------KAGHYAAEDSDFTLQLH 488 Query: 175 KRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + L P+ E + + T+ G ++D + + + QE +L++ Sbjct: 489 QVLRPMVAADEGLNRIYLLEMQVSEVLTTVERNGVKVDAAELGRQSHKLGQEMLQLEQKA 548 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + L LF + +V + S +++LA+D L ++ Sbjct: 549 YELAGQPF-NLNSPKQLGEILFGRMQLPVVRKTASGAPST-DEEVLSKLAQDYPLPQVLL 606 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L ++ GR+ A TGR + QN+P + + Sbjct: 607 EYRGLSKLKSTYTDKLPRMINPNTGRVHTHYS-QAAVITGRLASSDPNLQNIPVRTEA-- 663 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR IA G L+ AD + IE R++A ++ + Sbjct: 664 ----------------------GRRVREAFIAEQGM-LLSADYSQIELRIMAHVSDDANL 700 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 +AF GEDI+ T ++ F ++ VS EQR K + L Y G A Sbjct: 701 QRAFEAGEDIHRATASEVFGVSLEDVSTEQRRAAKAINFGLIYGMGVFGLASNLGITRDA 760 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + ++ + + D + + + A Sbjct: 761 AQAYIDRYFARYPGVAMYMDDTRRRAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAA 820 Query: 494 VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + GTA +L+K A A + + ++Q+ +L E + R+ Sbjct: 821 INAPMQGTAADLIKMAMIAVQDWLEAEKLQTRMIMQVHDELVLEAPDAELELVKEALPRL 880 >gi|218530645|ref|YP_002421461.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] gi|218522948|gb|ACK83533.1| DNA polymerase I [Methylobacterium chloromethanicum CM4] Length = 1047 Score = 263 bits (672), Expect = 7e-68, Method: Composition-based stats. Identities = 87/498 (17%), Positives = 165/498 (33%), Gaps = 83/498 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D + V N ++ + + GID+ T +++ L + + Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRPFD--DTMLISYV--LDAGKGGHGMDE 575 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 HL A +A + + +A Y D + T L++ Sbjct: 576 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 626 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + P ER L + + G ID +++ +L +Q +L+E+I + Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280 + + LF G+ + + + + +LA+ ILN Sbjct: 687 DAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 744 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++L + R+ + A+ TGR S QN+P + Sbjct: 745 YRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 798 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A GKKL+ AD + IE R+LA IA Sbjct: 799 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF G DI+ T + F +D+++ + R K + + Y G A Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 899 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++Q+ + + D + Q S++ + A+ Sbjct: 900 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 959 Query: 495 KDKLIGTACELVKKAWRA 512 + GTA +++++A Sbjct: 960 NAPIQGTAADIIRRAMTR 977 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 R Y ++ + + R+ +Q + DI+ M Sbjct: 935 GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 985 Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664 ++L VHDE+V E PD ++ + +M + P A L L+ Sbjct: 986 KLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1030 >gi|320162435|ref|YP_004175660.1| DNA polymerase I [Anaerolinea thermophila UNI-1] gi|319996289|dbj|BAJ65060.1| DNA polymerase I [Anaerolinea thermophila UNI-1] Length = 938 Score = 263 bits (672), Expect = 8e-68, Method: Composition-based stats. Identities = 110/615 (17%), Positives = 197/615 (32%), Gaps = 105/615 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQSAMP-SDL 57 + +D ET S PL L + EP + + T + +P + Sbjct: 358 IALDTETTSTDPLNGA------------LVGISLAVEPGTGYYLPVGHLTGEPQLPLESI 405 Query: 58 LQYLR----DETVMCVAHNSLFERILFK------KTLGIDIPSKRWICTSVLARTNGLPS 107 L D V N ++ + + + L D W+ +R GL Sbjct: 406 RDALAPFLGDPRKPKVGQNLKYDLLALRLAGMEAQGLAFDTLLAEWLVDPA-SRALGLK- 463 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 + L + + + GK PY A + E Sbjct: 464 EMAERYLGVQMTRIEELIGTGKNQRTMAQVSVAQVAPYAAADAEITLRLKPILEERMLKA 523 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 TR LF+ D E L + + G +D+ + ++ ++Q +++++I L Sbjct: 524 GVTR-LFQ------DVEMPLVPVLADMEWNGILLDVPFLQRMGVELSQRLAEIEKEIYAL 576 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH--SNITQLAKDLILNRLASS 285 + T L LF ++ D + T + S + +L + L Sbjct: 577 VGHPF-NINSTQQLSRVLFEELRLEPPDRRKKTSAGLYSTSAEVLEELRGRHPVLDLILE 635 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V+ GR+ G S TGR + QN+P + Sbjct: 636 NRELSKLKSTYVDALPQQVNPRTGRVHTRFNQTG-SVTGRLASSDPNLQNIPTRT----- 689 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR+ IA G L+ D + IE R++A +A ++ + Sbjct: 690 -------------------DLGRQVRNAFIADEGWVLLSVDYSQIELRIVAHVANDEAML 730 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHC 455 AF G+DI+ T A + P++ V++E R K + L Y A A + Sbjct: 731 AAFRAGQDIHAATAAAIYGVPLEAVTREMRRHAKAINFGLIYGMSAFGLSRSADLTLAEA 790 Query: 456 GLDLQQFSQNVKSTSTFED-------WEQAESHHLWMQDQYP---------------EFA 493 ++ + + F D E L + +P A Sbjct: 791 ENFVKAYFEQFPGVKRFLDDLRRRAAREGYVETLLGRRRYFPNLKNPANPALKAREEREA 850 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + GTA +++K A + + + V VPR M Sbjct: 851 INAPIQGTAADIIKLAMIR--------LPEALRAAGSRARLLLQVHDELVLEVPREEMPG 902 Query: 554 HKRDVHIVLPSSRRL 568 + V V+ ++ L Sbjct: 903 TAKLVQHVMETAYPL 917 >gi|315606907|ref|ZP_07881914.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] gi|315251415|gb|EFU31397.1| DNA-directed DNA polymerase I [Prevotella buccae ATCC 33574] Length = 920 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 92/591 (15%), Positives = 189/591 (31%), Gaps = 110/591 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLL 58 L +D ET S + +A + ++A ++ V + E++ + Sbjct: 348 KILSLDTETTSTNAI----------EAELVGLSFAVEERKAFYVAIPANREEALKIVAIF 397 Query: 59 QYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACL 114 + L D ++ V N ++ + + + + +++A P ++ Sbjct: 398 KPLYEDPEILKVGQNIKYDIEVLRHY---GVEVAGPMFDTMIAHYLLQPELRHNMDYMAE 454 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +EE LI + + T EY D + T L Sbjct: 455 V-YLGYRTVHIEE---LIGPRGRNQKNMRDLSPTDI---------YEYACEDADITLRLK 501 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P D E L + + G +D + + + E+ + +++ I Sbjct: 502 NVLEPKLDEAGVARLFHDIEMPLVGVLADMELNGVCLDTEALHETSEVFNKRMTTIEQHI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + + LF I T + + S + QL + Sbjct: 562 YELAGEQF-NISSPRQVGDILFGKMKIVDKPKKTKTGQFVTSEEVLQQLRSKSPIIDEIL 620 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + KL + L + ++ GR+ + + TGR S QN+P Sbjct: 621 NYRGLKKLLSTYVDALPKLINPRTGRIHTSFN-QTVTATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I G AD + IE R++A ++ ++ Sbjct: 673 -----------------VRDDDGKEIRKCFIPEPGCLFFSADYSQIELRIMAHLSEDENM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+AF G DI+ T A+ ++ I +V+ +R K + Y G A+ Sbjct: 716 IEAFREGFDIHAATAARIWHKDIGEVTPAERKKAKQANFGIIYGITTYGLAQRMDISNGE 775 Query: 455 CGLDL----------QQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFA 493 + + + + K T+ + + SH+ ++ A Sbjct: 776 ARDLIDGYFLTFPRVEAYMEQAKETARKQGYAETLFHRRRYLPDINSHNATVRGFAERNA 835 Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + + G+ +++K A H+ +LQ+ +L +E Sbjct: 836 INAPIQGSEADIIKVAMVRIHRRFKAEGIRSKMILQVHDELNFSVFPEEKE 886 >gi|163851894|ref|YP_001639937.1| DNA polymerase I [Methylobacterium extorquens PA1] gi|163663499|gb|ABY30866.1| DNA polymerase I [Methylobacterium extorquens PA1] Length = 1047 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 87/498 (17%), Positives = 165/498 (33%), Gaps = 83/498 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D + V N ++ + + GID+ T +++ L + + Sbjct: 521 LKPLLEDAGTLKVGQNLKYDLSVLHRY-GIDVRPFD--DTMLISYV--LDAGKGGHGMDE 575 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 HL A +A + + +A Y D + T L++ Sbjct: 576 LARRHLGHQPITFADVAGTGRNKVTFDRVAIDKATA---------YAAEDADVTLRLWRM 626 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + P ER L + + G ID +++ +L +Q +L+E+I + Sbjct: 627 MKPRLVAEHRVTVYETLERPLVPVLARMERAGIAIDRNMLSRLSGDFSQILARLEEEIQE 686 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILN 280 + + LF G+ + + + + +LA+ ILN Sbjct: 687 DAGERFQ-VSSPKQIGDVLFGKMGLPGAKKTPSG-QWATPATLLEELAQAGHDLPKKILN 744 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++L + R+ + A+ TGR S QN+P + Sbjct: 745 YRQLSKLKSTYTDSLQQHADRGTNRVHTSFAL-AATTTGRLSSSDPNLQNIPIRT----- 798 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A GKKL+ AD + IE R+LA IA Sbjct: 799 -------------------EEGRRIRRAFVAPEGKKLISADYSQIELRLLAHIADIPQLR 839 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF G DI+ T + F +D+++ + R K + + Y G A Sbjct: 840 EAFEQGIDIHAATASAMFGVALDQMTGDLRRRAKTINFGIIYGISAFGLADRLGIGREEA 899 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++Q+ + + D + Q S++ + A+ Sbjct: 900 SAFIKQYFERFPGIRDYIDTTKRSCREKGYVTTLFGRVCHYPQIRSNNPSERASVERQAI 959 Query: 495 KDKLIGTACELVKKAWRA 512 + GTA +++++A Sbjct: 960 NAPIQGTAADIIRRAMTR 977 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 18/107 (16%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 R Y ++ + + R+ +Q + DI+ M Sbjct: 935 GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEDALEAK 985 Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLK 664 ++L VHDE+V E PD ++ + +M + P A L L+ Sbjct: 986 KLTARMLLQVHDELVFEVPDDEVEATIPVIAGVMEEAP--APALTLR 1030 >gi|330890984|gb|EGH23645.1| DNA polymerase I [Pseudomonas syringae pv. mori str. 301020] Length = 921 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 86/554 (15%), Positives = 182/554 (32%), Gaps = 97/554 (17%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANC---A 416 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + T+ + + I+ Sbjct: 417 LDGDQTQGIDLQG------VRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIAG 470 Query: 148 TRANHVQ----AWQLFGEYCKRDVEATRELFK----------RLIPLS-DGERDLWLLDQ 192 A + A + G Y + + T L + L P+ D E L + Sbjct: 471 KGAKQLTFDQIAIEQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLHDIEMPLVPVLA 530 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 531 GIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGMP 589 Query: 253 LVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRL 305 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR+ Sbjct: 590 ILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRI 648 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 649 HTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRIR 683 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ Sbjct: 684 QAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVT 743 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + R K + L Y AK + ++ + + +A++ Sbjct: 744 TDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAA 803 Query: 482 HLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWRAKH------ 514 + A+ + GTA +++KKA A + Sbjct: 804 EQGFVETIFGRRLYLPDINAKTQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEES 863 Query: 515 ----QGVLQLWKDL 524 + +LQ+ +L Sbjct: 864 GLDARVILQVHDEL 877 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKTQSLRKGAERMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|58040155|ref|YP_192119.1| DNA polymerase I [Gluconobacter oxydans 621H] gi|58002569|gb|AAW61463.1| DNA polymerase I [Gluconobacter oxydans 621H] Length = 944 Score = 263 bits (671), Expect = 8e-68, Method: Composition-based stats. Identities = 81/512 (15%), Positives = 172/512 (33%), Gaps = 75/512 (14%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 + + V+ DRTE L L+D +V+ V N+ ++ +F+ +I Sbjct: 403 STGEAFVRQLDRTE---ALERLKPLLQDASVLKVFQNAKYDLTVFRGAGIPEITPIDDTM 459 Query: 96 TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR---FCKGSIDSPPYDCTRAN- 151 A++ G + L+ + + F + +I++ Sbjct: 460 LISYAQSAGEHGQGMDELSELHLGHTPVTYDSVTGTGRKRIPFAQVAIEAATAYAAEDAD 519 Query: 152 -HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 ++ WQ+ + L + ER L + + D G ++D + ++ Sbjct: 520 VTLRLWQVLRPQ--------LRTRQALALYEEIERPLIQILTDMEDVGIKVDATELRRMS 571 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 A+ ++++I + + L LF G+ ++ + Sbjct: 572 ADFAERMGTIEQEIHEQVGRSF-NVGSPKQLGEILFDEMGLPGGKRTKSG-SWGTDSGVL 629 Query: 271 TQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGC 323 LA+ L + + + KL + L + + D R+ + Q + TGR S Sbjct: 630 ESLAEQGHELPQKILAWRQLAKLKSTYADALVQQMDQDTQRVHTSFQM-AITTTGRLSSN 688 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R +A+ G L+ AD + Sbjct: 689 EPNLQNIPIRT------------------------EEGARIRKAFVATPGCVLLSADYSQ 724 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE R+LA +A + ++AF G+DI+ T ++ F P++ + R K + + Y Sbjct: 725 IELRLLAHVAKIEPLLEAFRLGQDIHARTASEVFGIPLEGMDPLTRRRAKAINFGIIYGI 784 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------------- 480 G A+ + + + + + + E+ Sbjct: 785 SAFGLAQQLQISPGEARSYIDAYFARYPGIRAYMERTKEEAKKHGYVTTPFGRRCYVPGI 844 Query: 481 --HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + A+ L G A +++K+A Sbjct: 845 TEKNGARRAYAERQAINAPLQGGAADIIKRAM 876 Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 22/125 (17%) Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM- 614 + + + G Y+ T + R Y + N +Q + DI+ M Sbjct: 818 MERTKEEAKKHGYVTTPFGRRCYVPGITEKNGARRAYAERQAINAPLQGGAADIIKRAMV 877 Query: 615 ---KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL-M--------------TKN 654 + G +VL VHDE++ E + ++ M Sbjct: 878 HLARRLPATGLKAKMVLQVHDELLFEVEEQDAKALADFVRTEMEGAAKLDVALEVETGIG 937 Query: 655 PSWAK 659 PSWA Sbjct: 938 PSWAD 942 >gi|330874574|gb|EGH08723.1| DNA polymerase I [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 921 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 89/561 (15%), Positives = 187/561 (33%), Gaps = 111/561 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84 A +++ P +L ++ + L L D + V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 419 Query: 85 --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136 I + ++L + L + H + GK F Sbjct: 420 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 479 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK----------RLIP-LSDGER 185 + +I + G Y + + T L + L P L+D E Sbjct: 480 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEM 523 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I +G +D +L+ + + L+ + + + L + L Sbjct: 524 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 582 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299 + G+ ++ + T + + + + +LA+ D L ++ ++ KL + L E + Sbjct: 583 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 641 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 642 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 676 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 736 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++ V+ + R K + L Y AK + ++ + + Sbjct: 737 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 796 Query: 475 WEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + ++ +++ A+ + GTA +++KKA A Sbjct: 797 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 856 Query: 514 H----------QGVLQLWKDL 524 + + +LQ+ +L Sbjct: 857 NGWLDESGLDARVILQVHDEL 877 Score = 40.9 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|330965636|gb|EGH65896.1| DNA polymerase I [Pseudomonas syringae pv. actinidiae str. M302091] Length = 921 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 89/561 (15%), Positives = 187/561 (33%), Gaps = 111/561 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84 A +++ P +L ++ + L L D + V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 419 Query: 85 --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136 I + ++L + L + H + GK F Sbjct: 420 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 479 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK----------RLIP-LSDGER 185 + +I + G Y + + T L + L P L+D E Sbjct: 480 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPSLQPVLNDIEM 523 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I +G +D +L+ + + L+ + + + L + L Sbjct: 524 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 582 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299 + G+ ++ + T + + + + +LA+ D L ++ ++ KL + L E + Sbjct: 583 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 641 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 642 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 676 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 736 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++ V+ + R K + L Y AK + ++ + + Sbjct: 737 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 796 Query: 475 WEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + ++ +++ A+ + GTA +++KKA A Sbjct: 797 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 856 Query: 514 H----------QGVLQLWKDL 524 + + +LQ+ +L Sbjct: 857 NGWLDESGLDARVILQVHDEL 877 Score = 40.9 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|326573955|gb|EGE23905.1| DNA polymerase I [Moraxella catarrhalis O35E] Length = 959 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 198/563 (35%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 543 QDKTAAQLLYH-------LEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + + Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 707 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 708 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891 >gi|326560574|gb|EGE10955.1| DNA polymerase I [Moraxella catarrhalis 103P14B1] Length = 959 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 198/563 (35%), Gaps = 94/563 (16%) Query: 5 FIDIETRSPQPL-----PKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSD- 56 ID ET + VG+ + D D + +P D Sbjct: 375 AIDTET---TDINWQHAKLVGISVSTADYEGYYIPVGHTADF------DVLLDNQLPIDT 425 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLK 110 L + + + + ++ +FKK GI+I W ++LA N + Sbjct: 426 VLSAFKPILENPNIGKIGQHLKYDAHIFKKY-GINISP--WQMDTMLASYVINAAATRHG 482 Query: 111 NACLA---LNFSEHLTKMEEGKALIAR-FCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 LA L + GK F K ++D+ Y C A+ + + F ++ Sbjct: 483 MDALAKHYLGVQTTTFEDVAGKGAKQLSFDKVAMDAASQYACEDADITFRLFNRFNQHIN 542 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D A + L+ E + + G ID D + +L + ++ L + Sbjct: 543 QDKTAAQLLYH-------LEIPTAQILTQMEHDGILIDTDFLGQLSDEFDKKIMALQIEA 595 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---DLILNR 281 ++ D + L LF GI ++ T + S + ++++ D++L Sbjct: 596 ERIADEPFNLA-SPKQLGEILFDKLGIAGGKKTK-TGQYATSEAVLSKIEHPLIDVVLEH 653 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + S +TL+ A GR+ + + TGR S QN+P + + Sbjct: 654 RSLSKLKSTYTDTLANAADEQGRVHTSY-HQALTSTGRLSSSDPNLQNIPIRTDT----- 707 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G+ ++ AD + IE R++A +G++ I+A Sbjct: 708 -------------------GRLIREAFIAPKGRMILAADYSQIELRLMAHFSGDESLIRA 748 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F + DI+ T A+ I +V+ +R K + L Y AK + + Sbjct: 749 FNHNLDIHTATAAEIMGKDISEVTPSERRAAKAVNFGLLYGMSAFGLAKQIEVDRAVAQD 808 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + + +S + ++D A+ Sbjct: 809 YIKRYFARYPAILEYMERTKTMAKQLGYVQTILGRKLYSPDIQSSNRMIKDAAERAAINA 868 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 L G+A E++K A A + + + Sbjct: 869 PLQGSAAEIIKLAMIAVDEVLPK 891 >gi|189464890|ref|ZP_03013675.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] gi|189437164|gb|EDV06149.1| hypothetical protein BACINT_01234 [Bacteroides intestinalis DSM 17393] Length = 941 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 92/592 (15%), Positives = 185/592 (31%), Gaps = 112/592 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW------DRTEQSAMPS 55 L ID ET S AE L ++ D + + +R E + + Sbjct: 369 KILSIDTETTS------------AEPMEAELVGMSFSDTENQAYYVPVPPEREEALKIVN 416 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113 + +E M V N ++ ++ + G+++ + + ++LA P + Sbjct: 417 EFRPLYENENSMKVGQNIKYDILVLQNY-GVEVKGE--LFDTMLAHYVLQPELRHNMDYL 473 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + ++E + K D PP + +Y D + T +L Sbjct: 474 AEIYLHYQTIHIDELIGPKGKNQKNMRDLPP------------EEVYKYACEDADITLKL 521 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L + + G RID + + + E ++++++ Sbjct: 522 KNVLEEELKKQGVEHLFYEIEMPLVRVLANMESNGVRIDTETLKQTSEHFTVRLQEIEKE 581 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I +L + + LF I T + + S + L + Sbjct: 582 IYELAGETFNIA-SPKQVGEILFDKLKIIDKAKKTKTGQYVTSEEVLESLRNKHEVIGKI 640 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 641 LEYRGLKKLLGTYVDALPLLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR---- 695 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I + + AD + IE R++A ++ + Sbjct: 696 --------------------DEDGKEIRKAFIPDDDCEFFSADYSQIELRIMAHLSEDKN 735 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I AF +G DI+ T AK + I V+ + R K + Y G A+ Sbjct: 736 MIDAFLSGYDIHAATAAKIYKIDIKDVTPDMRRKAKTANFGIIYGISIFGLAERMNVDRK 795 Query: 454 HCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEF 492 + + + + D S + ++ Sbjct: 796 EAKELIDGYFETYPQVREYMDKSIQVAREQGYVETIFHRKRFLPDINSRNATVRGYAERN 855 Query: 493 AVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 A+ + G+A +++K A ++ +LQ+ +L +E Sbjct: 856 AINAPIQGSAADIIKVAMARIYERFQSYKLKAKMILQVHDELNFSVPEAEKE 907 >gi|294649387|ref|ZP_06726818.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] gi|292824757|gb|EFF83529.1| DNA-directed DNA polymerase [Acinetobacter haemolyticus ATCC 19194] Length = 921 Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats. Identities = 97/568 (17%), Positives = 188/568 (33%), Gaps = 102/568 (17%) Query: 3 KLFIDIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 ID ET L V A A A+ ++ P +L + + + Sbjct: 348 HFAIDTETTNLDYRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQL----NREHVLEQIK 403 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLAL 116 L +E V + H+ ++ +F I + W ++LA N + +A Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH---GITIQGWYFDTMLASYVLNAAATRHGMDDVAR 460 Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + HLT E GK + F + ++ + Y D T Sbjct: 461 VYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAH----------------YAAEDAHVTYR 504 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L++ L L + E + + + + G ++D + +L ++ + L+ Sbjct: 505 LYEVLSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQTLE 564 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +L + + LF G+ + T + S S + ++ L Sbjct: 565 NQATELAGEAFNIA-SPKQVGEVLFDRLGLKGGKKT-ATGQYSTSESILEKIEHPLAEVI 622 Query: 282 LASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L G A LK NT ++ + S R+ + + TGR S QN+P + Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDSTHRVHTSY-HQALTATGRLSSTDPNLQNIPIRT-- 678 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G+ L+ AD + IE R++A + +D Sbjct: 679 ----------------------PIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDD 716 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + AF G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 717 ALVHAFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTR 776 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPE 491 + ++ Q + + + + ++ Sbjct: 777 EESRSYIARYFQRYPGVLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAER 836 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +++K A A + + + Sbjct: 837 AAINAPLQGSAADIIKLAMIAVDKILPK 864 >gi|213971016|ref|ZP_03399137.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] gi|301385579|ref|ZP_07233997.1| DNA polymerase I [Pseudomonas syringae pv. tomato Max13] gi|302058837|ref|ZP_07250378.1| DNA polymerase I [Pseudomonas syringae pv. tomato K40] gi|302132134|ref|ZP_07258124.1| DNA polymerase I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924252|gb|EEB57826.1| DNA polymerase I [Pseudomonas syringae pv. tomato T1] Length = 921 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 86/561 (15%), Positives = 184/561 (32%), Gaps = 111/561 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84 A +++ P +L ++ + L L D + V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 419 Query: 85 --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136 I + ++L + L + H + GK F Sbjct: 420 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 479 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGER 185 + +I + G Y + + T L + L++ E Sbjct: 480 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEM 523 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I +G +D +L+ + + L+ + + + L + L Sbjct: 524 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 582 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299 + G+ ++ + T + + + + +LA+ D L ++ ++ KL + L E + Sbjct: 583 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 641 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 642 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 676 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 736 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++ V+ + R K + L Y AK + ++ + + Sbjct: 737 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 796 Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + +++ A+ + GTA +++KKA A Sbjct: 797 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 856 Query: 514 H----------QGVLQLWKDL 524 + + +LQ+ +L Sbjct: 857 NGWLDESGLDARVILQVHDEL 877 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 27/158 (17%), Positives = 54/158 (34%), Gaps = 13/158 (8%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDT 639 DI+ + M ++G D ++L VHDE+V E + Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVRED 884 >gi|88800524|ref|ZP_01116087.1| DNA polymerase I [Reinekea sp. MED297] gi|88776755|gb|EAR07967.1| DNA polymerase I [Reinekea sp. MED297] Length = 933 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 96/571 (16%), Positives = 192/571 (33%), Gaps = 97/571 (16%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-IDIPSKR--- 92 + E K+ D ++ + + L+ D ++ ++ + ++I R Sbjct: 381 FQSEESKVLD---EAEVFNKLIPLFEDHAIVKTGYDIKADY----HWFNALNISPSRLLN 433 Query: 93 ------WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ S L R L + + + ++L K K + K Sbjct: 434 DVQVMAFVYDSTLKRDKSLSAHFSHLSIDNLVIQYLQKSP--KTVEDYLGKAGKRQLSPS 491 Query: 147 CTRANHVQAWQL----FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 +A+ + W F + +E + + ER L I + G ++D Sbjct: 492 AVKADDIGQWWAERADFVLRLGQWLEQGLASRQLSRVYQEIERPLSKTLAAIEENGVKLD 551 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 ++ V +L ++ + ++ L + L LF G+ + + Sbjct: 552 VEFVHELSTRFKRDLEDIERQAHDLAGVEF-NLDSPKQLADVLFERMGLPVKSKTASGAP 610 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA-VSSDG--RLRGTLQFYGA 314 S + +T+LA + L RL + KL + L + DG RL T GA Sbjct: 611 ST-NEEVLTELAAEHELPRLILQSRRLRKLVGTYTDPLPTMTIDHDGDQRLHTTYNQTGA 669 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 +TGR + QN+P + +R +A G Sbjct: 670 -QTGRLNSNDPNLQNIPVRS------------------------EEGRSIRKAFVAPQGY 704 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 ++V AD + IE R++ ++ + I+AF G+DI+ T A+ ++VS EQR K Sbjct: 705 RIVAADYSQIELRIMTHLSQDANLIQAFREGKDIHRATAAEVMGIEEEQVSAEQRRSAKA 764 Query: 435 MELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------- 481 + L Y A+ + + + + + D +AE+ Sbjct: 765 INFGLIYGMSAFGLARQLGISRTEAKTYVDAYFERYPGVRRYMDETRAEAAESGYVETVF 824 Query: 482 ------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQ 519 + + A+ + GTA +++K A + ++Q Sbjct: 825 GRRLYLPGIQSSNQIARKAAERTAINAPMQGTAADIIKMAMVDVDNWLSNSSLRARMIMQ 884 Query: 520 LWK----DLTEGFACVVQEGGSISARRVANV 546 + ++ E + EG + AN+ Sbjct: 885 VHDELVFEVHEDDVAALTEGVRFRMQHCANL 915 >gi|226954287|ref|ZP_03824751.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] gi|226834958|gb|EEH67341.1| DNA polymerase I [Acinetobacter sp. ATCC 27244] Length = 921 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 96/564 (17%), Positives = 186/564 (32%), Gaps = 94/564 (16%) Query: 3 KLFIDIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 ID ET L V A A A+ ++ P +L + + + Sbjct: 348 HFAIDTETTNLDYRIAELVGFSVAFDAHDAYYVPVAHDYEGAPEQL----NREHVLEQIK 403 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLAL 116 L +E V + H+ ++ +F I + W ++LA N + +A Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH---GITIQGWYFDTMLASYVLNAAATRHGMDDVAR 460 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + HLT E I N ++ ++ Y D T L++ Sbjct: 461 VYLSHLTTTFEQ-----------IAGKGAKQKSFNQIEL-EVAAHYAAEDAHVTYRLYEV 508 Query: 177 LIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L L + E + + + + G ++D + +L ++ + L+ Sbjct: 509 LSAKLKHHPELVNILHNIEMPVARVLTGMEEDGIKLDHAFLDQLSVEFSETMQTLENQAT 568 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF G+ + T + S S + ++ L L Sbjct: 569 ELAGEAFNIA-SPKQVGEVLFDRLGLKGGKKT-ATGQYSTSESILEKIEHPLAEVILEHR 626 Query: 286 GSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 G A LK NT ++ + S R+ + + TGR S QN+P + Sbjct: 627 GLAKLK-NTYTDRLVEQSHDSTHRVHTSY-HQALTATGRLSSTDPNLQNIPIRT------ 678 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA G+ L+ AD + IE R++A + +D + Sbjct: 679 ------------------PIGRQIRRAFIAPEGRVLLAADYSQIELRLMAHFSQDDALVH 720 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AF G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 721 AFQQGQDVHRRTAAEVLGIDIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTREESR 780 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVK 495 + ++ Q + + + + ++ A+ Sbjct: 781 SYIARYFQRYPGVLDYMERTRQIAREQGFVETILGRRLYTPDILANNKMIKQAAERAAIN 840 Query: 496 DKLIGTACELVKKAWRAKHQGVLQ 519 L G+A +++K A A + + + Sbjct: 841 APLQGSAADIIKLAMIAVDKILPK 864 >gi|224536944|ref|ZP_03677483.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] gi|224521431|gb|EEF90536.1| hypothetical protein BACCELL_01820 [Bacteroides cellulosilyticus DSM 14838] Length = 941 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 92/592 (15%), Positives = 186/592 (31%), Gaps = 112/592 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW------DRTEQSAMPS 55 L ID ET S AE L ++ D + + +R E + + Sbjct: 369 KILSIDTETTS------------AEPMEAELVGMSFSDTENQAYYVPVPAEREEALKIVN 416 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNAC 113 + +ET M V N ++ ++ + + K + +++A P + Sbjct: 417 EFRPLYENETSMKVGQNIKYDILVLQNY---GMEVKGELFDTMIAHYVLQPELRHNMDYL 473 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + ++E LI K + + +++ Y D + T +L Sbjct: 474 AEIYLHYQTIHIDE---LIGPRGKNQKNM--------RDLPPEEVYK-YACEDADVTLKL 521 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L + E L + + G RID + + + E ++++++ Sbjct: 522 KNVLEEELKKQGVEHLFYEIEMPLVRVLANLESNGVRIDTEALKQTSEHFTVRLQEIEKE 581 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I +L + + + LF I T + + S + L + Sbjct: 582 IYELAEETFNIA-SPKQVGEILFDKLKITDKAKKTKTGQYVTSEEVLESLRNKHEIIGKI 640 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 641 LEYRGLKKLLGTYIDALPLLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR---- 695 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R I +G + AD + IE R++A ++ + Sbjct: 696 --------------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKN 735 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I AF +G DI+ T AK + I V+ + R K + Y G A+ Sbjct: 736 MIDAFLSGYDIHAATAAKIYKVDIKDVTSDMRRKAKTANFGIIYGISIFGLAERMNVDRK 795 Query: 454 HCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEF 492 + + + + D S + ++ Sbjct: 796 EAKELIDGYFETYPQVREYMDKSIQIAREQGYVETIFHRKRFLPDINSRNATVRGYAERN 855 Query: 493 AVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 A+ + G+A +++K A ++ +LQ+ +L +E Sbjct: 856 AINAPIQGSAADIIKVAMARIYKRFQSNNLKAKMILQVHDELNFSVPEAEKE 907 >gi|194367713|ref|YP_002030323.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] gi|194350517|gb|ACF53640.1| DNA polymerase I [Stenotrophomonas maltophilia R551-3] Length = 924 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 92/555 (16%), Positives = 177/555 (31%), Gaps = 108/555 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A + + P +L + L L+D + + ++ + ++ Sbjct: 376 AAYIPVGHDYPGAPPQLP----MQQVLDALRPVLQDPAKKKLGQHGKYDLHVLRRH---G 428 Query: 88 IPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FCKGSID 141 + + + ++L N + LAL + + T + GK F + ID Sbjct: 429 VEVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYNTIKFEDVAGKGAKQIPFSQVGID 488 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-----------DGERDLWLL 190 Y D + T L + L P D E L + Sbjct: 489 EASR----------------YAAEDADITLRLHRALQPQLLAEPALDSVYRDIEMPLVPV 532 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 +I G RID + + + ++ + +L + L+ LF Sbjct: 533 LTSIEANGVRIDTVELRRQSQDLSSRMLAAQQKATELAGRSF-NLDSPKQLQAVLFDELK 591 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GR 304 + V + S + + +A L R+ + KL + L E V+ D GR Sbjct: 592 LPAVVKTPKGQPSTNEEA-LEAIADQHELPRVILEYRGLAKLRSTYTDKLPEMVNPDTGR 650 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + GA+ TGR S QN+P + + Sbjct: 651 VHTSYHQSGAA-TGRLSSSDPNLQNIPIRTED------------------------GRRI 685 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R IA G +L+ AD + IE R++A ++ + + AF G D++ T A+ F +++V Sbjct: 686 RRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLVGAFEQGADVHRATAAEVFGRTLEEV 745 Query: 425 SKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW----- 475 + +R K + L Y A+ + + F + Sbjct: 746 TPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQAQDYVALYFSRYPGVRDFMERMRQQA 805 Query: 476 ----------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ---- 515 + + ++ A+ + GTA +++K+A Q Sbjct: 806 RDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAADIIKRAMVDVDQWLRD 865 Query: 516 ------GVLQLWKDL 524 +LQ+ +L Sbjct: 866 SGAPARMILQVHDEL 880 Score = 38.9 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 14/174 (8%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F G I + + L Sbjct: 732 ATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLG--IDRGQAQDYVALYFS 789 Query: 553 RHKR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + + + + G YLN ++ R + N +Q + Sbjct: 790 RYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAINAPMQGTAA 849 Query: 608 DILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 DI+ M + + ++L VHDE+V ET + + + M++ Sbjct: 850 DIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEELRLQVVERMSQA 903 >gi|331014880|gb|EGH94936.1| DNA polymerase I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 921 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 86/561 (15%), Positives = 184/561 (32%), Gaps = 111/561 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84 A +++ P +L ++ + L L D + V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 419 Query: 85 --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136 I + ++L + L + H + GK F Sbjct: 420 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 479 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGER 185 + +I + G Y + + T L + L++ E Sbjct: 480 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEM 523 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I +G +D +L+ + + L+ + + + L + L Sbjct: 524 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 582 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299 + G+ ++ + T + + + + +LA+ D L ++ ++ KL + L E + Sbjct: 583 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 641 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 642 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 676 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F Sbjct: 677 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 736 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++ V+ + R K + L Y AK + ++ + + Sbjct: 737 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 796 Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + +++ A+ + GTA +++KKA A Sbjct: 797 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 856 Query: 514 H----------QGVLQLWKDL 524 + + +LQ+ +L Sbjct: 857 NGWLDESGLDARVILQVHDEL 877 Score = 40.9 bits (94), Expect = 0.76, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 729 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 786 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 787 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 846 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 847 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 892 >gi|28867575|ref|NP_790194.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] gi|28850810|gb|AAO53889.1| DNA polymerase I [Pseudomonas syringae pv. tomato str. DC3000] Length = 925 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 86/561 (15%), Positives = 184/561 (32%), Gaps = 111/561 (19%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL--- 84 A +++ P +L ++ + L L D + V ++ F L Sbjct: 368 AAYIPLTHSYMGVPQQL----DRDTVLKTLKPLLEDPNKIKVGQHAKFAINLLANCAIGG 423 Query: 85 --GIDIPSKRWICTSVLARTN--GLPSSLKNACLALNFSEHLT---KMEEGKALIAR-FC 136 I + ++L + L + H + GK F Sbjct: 424 DQAQGIELQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQDIAGKGAKQLTFD 483 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGER 185 + +I + G Y + + T L + L++ E Sbjct: 484 QIAI----------------EQAGNYAAEEADLTLRLHEVFEARLAAIPTLQPVLNEIEM 527 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + I +G +D +L+ + + L+ + + + L + L Sbjct: 528 PLVPVLARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVIL 586 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAV 299 + G+ ++ + T + + + + +LA+ D L ++ ++ KL + L E + Sbjct: 587 YEKLGMPILSKT-ATGQPSTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQI 645 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ + + TGR S QN+P + Sbjct: 646 NPRTGRIHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------ 680 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G KL+ AD + IE R++A +A ++ + AF N D++ T ++ F Sbjct: 681 AEGRRIRQAFVAPKGYKLLAADYSQIELRIMAHLAKDEGLLHAFRNDLDVHRATASEVFG 740 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++ V+ + R K + L Y AK + ++ + + Sbjct: 741 VELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYME 800 Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + +++ A+ + GTA +++KKA A Sbjct: 801 RTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAADIIKKAMVAV 860 Query: 514 H----------QGVLQLWKDL 524 + + +LQ+ +L Sbjct: 861 NGWLDESGLDARVILQVHDEL 881 Score = 40.9 bits (94), Expect = 0.75, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 733 ATASEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 790 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 791 RYPGVLDYMERTRTQAAEQGFVETIFGRRLYLPDINAKNPSLRNGAQRMAINAPMQGTAA 850 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 851 DIIKKAMVAVNGWLDESGLDARVILQVHDELVLEVREDL---VDQISEQ 896 >gi|114568570|ref|YP_755250.1| DNA polymerase I [Maricaulis maris MCS10] gi|114339032|gb|ABI64312.1| DNA polymerase I [Maricaulis maris MCS10] Length = 928 Score = 262 bits (670), Expect = 1e-67, Method: Composition-based stats. Identities = 92/547 (16%), Positives = 172/547 (31%), Gaps = 100/547 (18%) Query: 48 TEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 +P D L L D V+ + N ++ + + GID+ Sbjct: 388 AAPEQIPMDQALKVLKPLLEDPAVLKIGQNFKYDLGVLSRY-GIDVAPYDDTMLISYVME 446 Query: 103 NGLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 GL +A L+ +E GK I F K +D Sbjct: 447 AGLHGHGMDALAELHLGHTCIPFKEICGTGKNQIT-FDKVPLDKA--------------- 490 Query: 159 FGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T L++ L P ER + + + G ++D D + + Sbjct: 491 -TLYAAEDADITLRLWEILKPALVAKKMATVYETLERPMADVLSKMERVGIKVDPDQLNR 549 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L Q+ + + + + + LF G+ ++ T + Sbjct: 550 LSSDFGQKMMAAEAEAHEAAGRDF-NVASPKQIGEILFGEMGLPGGKKTK-TGAWSTDAA 607 Query: 269 NITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + QLA + L KL ++L ++ D + T A+ TGR S Sbjct: 608 VLDQLAAEGHALPVALLEYRQFAKLKSTYSDSLFAHINRDTKRVHTSFSLAATTTGRLSS 667 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + + +R IA G LV AD + Sbjct: 668 TEPNLQNIPIRTEA------------------------GRQIREVFIAEPGHVLVAADYS 703 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 +E R+LA IA + +AF +G DI+ T ++ F PI+ + R K + + Y Sbjct: 704 QVELRLLAHIANVESLKQAFRDGTDIHAMTASEVFGVPIEGMDPMVRRKAKAINFGVIYG 763 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------------ 480 G A + + + + D +A++ Sbjct: 764 ISAFGLANQIGVKRDEAKAFIDAYFEKFPGIRAYMDEMKAKAAETGYVETIFGRRAHFPG 823 Query: 481 ---HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACV 531 + M+ A+ + G+A +++++A + ++ + + Sbjct: 824 IRDKNPNMRMFAERQAINAPIQGSAADVIRRAMIRMDDALNAANLDAKMLLQVHDELVFE 883 Query: 532 VQEGGSI 538 V E + Sbjct: 884 VPENQAA 890 >gi|319898198|ref|YP_004158291.1| DNA polymerase I [Bartonella clarridgeiae 73] gi|319402162|emb|CBI75688.1| DNA polymerase I [Bartonella clarridgeiae 73] Length = 968 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 83/498 (16%), Positives = 167/498 (33%), Gaps = 83/498 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L ++ ++ + N ++ ++ K+ I + S A G+ + + Sbjct: 442 LKPILENQAILKIGQNIKYDWLVMKQY-DIVMRSFDDTMLLSYALEAGISTHGIDVLSER 500 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 ++ + K + D +A Y D + T L++ Sbjct: 501 WLGHKPITYKD----LTYNGKKIVSFAQIDLKQAT---------LYAAEDADITLRLWQV 547 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P +R L + + +RG +D ++ +L +AQ L+E+I + Sbjct: 548 LKPQLVAQRMTKIYERLDRPLIEILARMEERGILVDRQILSRLSGELAQAALNLEEEIYQ 607 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285 L + L LF G+ ++ + S + +LA + IL R Sbjct: 608 LVGERFNIA-SPKQLGDILFGKMGLPGGAKTKNG-QWSTSAQTLEELATEGHILPRKIVD 665 Query: 286 GSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + + GR+ + TGR S QN+P + Sbjct: 666 WRQLAKLKSTYTDALPSYILTKTGRVHTNYSLAT-TSTGRLSSSEPNLQNIPART----- 719 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R+ IAS G L+ AD + IE R+LA A Sbjct: 720 -------------------AEGRKIRAAFIASEGHILLSADYSQIELRILAHFADIGALK 760 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF G+DI+ T ++ F ++ + + R K + + Y G A Sbjct: 761 EAFLQGQDIHAMTASQMFGVAVEGMPSDIRQRAKAINFGIIYGISSFGLANQLGISRKEA 820 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAV 494 G ++ + + + + + + H ++ A+ Sbjct: 821 GNYIRLYFERFPGIEDYMEKTKMFARHHGYVETIFGRRIHYPEIKTANPQIRAFNERAAI 880 Query: 495 KDKLIGTACELVKKAWRA 512 + G+A +++++A Sbjct: 881 NAPIQGSAADIIRRAMIQ 898 >gi|329119683|ref|ZP_08248364.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] gi|327464280|gb|EGF10584.1| DNA-directed DNA polymerase I [Neisseria bacilliformis ATCC BAA-1200] Length = 932 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 107/595 (17%), Positives = 198/595 (33%), Gaps = 95/595 (15%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 ++ ID ET S L + + A +A ++ P +L D + L Sbjct: 353 ERIGIDTETTSLDAMNAQLVGISIAFEAGEAAYIPLGHSMTAAPQQL-DLQDT---LGRL 408 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-------NGLPSSLK 110 +L + ++ + N +++ +F I + ++LA +GL L Sbjct: 409 KPHLENGSLKKIGQNLKYDQHVFANY---GIALRGIAGDAMLASYIVESHLGHGLD-ELS 464 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L L + + +G I+ + Y A+ F + + A Sbjct: 465 ERWLGLPTITYESLCGKGAKQISFADVAVEQAAEYAAQDAD-------FALRLEAHLRAQ 517 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + K+L + E + + + G ID + + KL+E + Sbjct: 518 MD-EKQLEMYLNLELPVAQVLFEMERNGVHIDRAELAAQSSELGAALLKLEEQAFQTAGQ 576 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAI 289 + L+ LF GI + + I + + + QLA D L ++ ++ Sbjct: 577 PF-NLNSPKQLQEILFDKMGIPTKGLKKTASGGISTNEAVLEQLAPDYPLPKIILENRSL 635 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E ++ GR+ T + TGR + QN+P + Sbjct: 636 AKLKSTYTDKLPEMINPRTGRVHTTYS-QAVAITGRLASSNPNLQNIPIRT--------- 685 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR A G +V AD + IE R++A ++G+ + AF Sbjct: 686 ---------------AEGRRVRRAFTAPAGSLIVSADYSQIELRIMAHLSGDKTLMAAFQ 730 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 NGED++ T A+ F + VS EQR K + L Y G AK + Sbjct: 731 NGEDVHRRTAAEVFGIAPENVSPEQRRYAKTINFGLIYGMGQYGLAKSLGIDNLSAKNFI 790 Query: 460 QQFSQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKL 498 ++ + + + E + + + A+ + Sbjct: 791 DRYFARYPGVAEYIQRTKEEAAAQGYVETLFGRRLYLPDIRAKNANARAGAERAAINAPM 850 Query: 499 IGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543 GTA +L+K+A A ++Q+ +L E +V Sbjct: 851 QGTASDLIKRAMIAVSSRLHSDGLESKLIMQVHDELVLEVVENELETVKEMLPQV 905 >gi|258543756|ref|ZP_05703990.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] gi|258520992|gb|EEV89851.1| DNA polymerase I [Cardiobacterium hominis ATCC 15826] Length = 881 Score = 262 bits (669), Expect = 1e-67, Method: Composition-based stats. Identities = 92/508 (18%), Positives = 169/508 (33%), Gaps = 94/508 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLA 115 L L + ++R +F + GI++ + T +++ T + LA Sbjct: 333 LKPLLEASAPPKSGQHHKYDRHIFARA-GIELRGIKD-DTMLMSYTIDSTATRHNLDDLA 390 Query: 116 LNFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + H T E GK F + +++ Y D + T Sbjct: 391 DYYLNHQTTTFEDIAGKGAKQLTFDQIPLETA----------------TAYACEDADITL 434 Query: 172 ELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L L P + E L L I G RID + I+ + L Sbjct: 435 RLKNHLAPKLAAVPQLDALYRELEMPLAELLYKIEATGVRIDPAALAAQSAEISGQLAAL 494 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL--I 278 + L + L+ L+ G+ ++ + S + + +LA+ Sbjct: 495 EHAAHTLAGSPF-NLGSPKQLQEILYDQLGLPVLRKTPKGQPST-NEEVLAELAESHGAE 552 Query: 279 LNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L RL + KL T L E ++ GR+ + + TGR S QN+P Sbjct: 553 LPRLILEHRGLAKLKTTYTDRLPELINPHTGRIHTSY-HQAVTSTGRLSSSDPNLQNIPV 611 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + + +R IA +G +++ AD + IE R++A + Sbjct: 612 RSEA------------------------GRRIRRAFIAEDGWQILAADYSQIELRIMAHL 647 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448 + + + AFA G+DI+ T A+ F + VS+EQR K + L Y A+ Sbjct: 648 SADPGLLAAFARGDDIHRATAAEIFGVAPEAVSREQRRDAKAINFGLIYGMSAFGLARQL 707 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487 + + + D + +H + + Sbjct: 708 NIPRGQAADYIDTYFARYPKVRDYMDATREAAHKQGYVETLLGRRLYLPDINSKNPQRRQ 767 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQ 515 A+ + G+A +++K+A A + Sbjct: 768 ASERLAINAPMQGSAADIIKRAMLAIDR 795 >gi|170691111|ref|ZP_02882277.1| DNA polymerase I [Burkholderia graminis C4D1M] gi|170144360|gb|EDT12522.1| DNA polymerase I [Burkholderia graminis C4D1M] Length = 913 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 109/580 (18%), Positives = 192/580 (33%), Gaps = 109/580 (18%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E A A+ D PV+L + + + L + Sbjct: 339 SFDTETTSLDPMVAQIVGLSFSVEAGHAAYVPVAHRGPDAPVQLP----RDEVLAKLKPW 394 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + GI++ T + + LAL Sbjct: 395 LESAEHKKVGQHLKYDEQVLANY-GIEMRGVE-HDTLLQSYVLESHRPHDMDNLALRHLG 452 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 K E+ GK F + ++D T L + Sbjct: 453 IKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDAD----------------ITLRLHQT 496 Query: 177 LIPLSDGERDLWLLDQT-----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E L + + + G ID + + + IA +L+ + Sbjct: 497 LYPQLAAEETLEHVYRDIEVPTSRVLRKMERSGVLIDAEKLRQQSSEIATRLIQLESEAY 556 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L G + + F + +V + S + +LA+D L ++ Sbjct: 557 VLAGGEF-NLGSPKQIGQIFFERLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKILLE 614 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V++ GR+ + TGR + QN+P + Sbjct: 615 HRGLSKLKSTYTDKLPRMVNANTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 668 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G KLV AD + IE R++A I+G++ + Sbjct: 669 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF+ GEDI+ T A+ F+ +VS +QR + KV+ L Y A Sbjct: 710 RAFSEGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAA 769 Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAV 494 L + ++ + + D E LW+ + A+ Sbjct: 770 KLYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 829 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA +L+K + A + ++Q+ +L Sbjct: 830 NAPMQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDEL 869 >gi|332188178|ref|ZP_08389907.1| DNA polymerase I family protein [Sphingomonas sp. S17] gi|332011785|gb|EGI53861.1| DNA polymerase I family protein [Sphingomonas sp. S17] Length = 921 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 97/559 (17%), Positives = 184/559 (32%), Gaps = 90/559 (16%) Query: 4 LFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAMPS 55 + ID ET S L V + +A + + PV++ + Sbjct: 340 IAIDTETSSTDATQAELVGVSLCLSPNKACYIPLGHGGTDLLSEVPVQIP----VAEALE 395 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 + D +V+ + N F+ I+ + GI I GL + A Sbjct: 396 RIKALCEDPSVLKIGQNLKFDMIVLGE-RGISIAPHDDTIVMSFDLDAGLHGHGMDELAA 454 Query: 116 LNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEAT 170 + S +E GK + + Y A+ ++ W+ F + +E Sbjct: 455 THLSHTCLAFKEVVGTGKKQLGFHEVDLKTATRYAAEDADVTLRLWKRFK--ARLPMEQA 512 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +++ +R L + + RG ++D + + +L A + L+ +I L Sbjct: 513 TRVYEM------VDRPLVPVIANMERRGIKVDRERLSQLSTEFAGQIAGLEGEIHTLAGT 566 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-------LILNRLA 283 L LF G+ + + + + +LA+D IL Sbjct: 567 PFTI-GSPKQLGEILFDRLGLKGGRKGKSGV-YSTDVTELERLARDGGEEIVRKILEWRQ 624 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S + L ++ GR+ + GA +TGR S QN+P + Sbjct: 625 LSKLKSTYTDALQAQINPKTGRVHTSYSLTGA-QTGRLSSTEPNLQNIPIRT-------- 675 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA +G L+ AD + IE R+ A +A AF Sbjct: 676 ----------------EVGRQLREAFIAEDGHVLIAADYSQIELRLAAHMADVPALRDAF 719 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 ANG+DI+ T + F +V+++ R K + A+ Y G A A Sbjct: 720 ANGDDIHSLTAKELFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLDVSADEAQAM 775 Query: 459 LQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDK 497 + ++ + + + + + S + + A+ Sbjct: 776 IDRYFERFPGINRYIAETLSSVREKGFTETLFGRKTHFPRIASRNQGERQGAERAAINAP 835 Query: 498 LIGTACELVKKAWRAKHQG 516 + GT+ +++K+A Sbjct: 836 IQGTSADIIKRAMVRMEPA 854 >gi|298387037|ref|ZP_06996591.1| DNA polymerase type I [Bacteroides sp. 1_1_14] gi|298260187|gb|EFI03057.1| DNA polymerase type I [Bacteroides sp. 1_1_14] Length = 949 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 86/581 (14%), Positives = 180/581 (30%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57 L +D ET +P+ A + +++ + V + D E++ + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + G+ + + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKGA--LFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + D Y D + T +L Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDI---------YRYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + ++++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTSTGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + S + + S + ++ A+ Sbjct: 806 KELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906 >gi|260220821|emb|CBA28770.1| DNA polymerase I [Curvibacter putative symbiont of Hydra magnipapillata] Length = 542 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 91/543 (16%), Positives = 181/543 (33%), Gaps = 96/543 (17%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A+ + P +L ++ + + L +L + + + + ++R +F GI++ Sbjct: 1 MAHRYPGAPEQL----DRDVVLAKLKPWLENPQALKLVQHIKYDRHVFANH-GIEVQGYA 55 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 T + + A LA + C + +D Sbjct: 56 -HDTMLQSYVLEADKPHGLASLAER------HLGRSGISFEDLCGKGANQISFDQVDI-- 106 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ----------TINDRGYRID 202 EY D + T ++ L P + L + + I G ID Sbjct: 107 ----AKAAEYACEDSDQTLDVHLVLWPQIEANDKLKFIYELEIASSEALYRIERNGVLID 162 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + + Q +L+ + ++ S L F G+ +V + T Sbjct: 163 APTLAAQSHELGQRILQLETEAYEIAGQPFNLS-SPKQLGEIFFDKLGMPVVKKT-ATGA 220 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE-AVSSDGRLRGTLQFYGASR 316 + +LA+D L ++ KL + L++ A+ GR+ + Sbjct: 221 RSTDEEVLEKLAEDYPLPAKLLEHRSLAKLKGTYTDKLAQLALPRTGRVHTHYA-QAVAV 279 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + VR +A+ G + Sbjct: 280 TGRLSSNDPNLQNIPIRT------------------------AEGRRVREAFVAAPGCVI 315 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 AD + IE R++A I+ + ++AF +G D++ T A+ F P+D+VS EQR KV+ Sbjct: 316 ASADYSQIELRIMAHISDDPALLRAFHDGLDVHRATAAEVFGVPVDQVSSEQRRYAKVIN 375 Query: 437 LALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST-STFEDWEQAESHHLWMQDQY-- 489 L Y A+ + +Q++ + + E + +++ + Sbjct: 376 FGLIYGMSAFGLARNLGIDNTAAKNYIQRYFERYPGVKAYMESTRELAKRQGYVETVFGR 435 Query: 490 ------------------PEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLW 521 A+ + GTA +L+K + + ++Q+ Sbjct: 436 RLQLAGIKNAKGAQLAGLERAAINAPMQGTAADLIKLSMVKVQQVLDAQNKSTKMIMQVH 495 Query: 522 KDL 524 +L Sbjct: 496 DEL 498 >gi|281412608|ref|YP_003346687.1| DNA polymerase I [Thermotoga naphthophila RKU-10] gi|281373711|gb|ADA67273.1| DNA polymerase I [Thermotoga naphthophila RKU-10] Length = 893 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 104/580 (17%), Positives = 191/580 (32%), Gaps = 108/580 (18%) Query: 5 FIDIETRS----PQPLPKVGV-WAYAEQAVITLC---AYAWDDEPVKLWDRTEQSAMPSD 56 ID+ET S + + V + E I L A D++ V Sbjct: 321 AIDLETSSLDPFDCDIAGISVSFKPKEAYYIPLHHRNAQNLDEKEV-----------LKK 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L + L D V N F+ + + + +++A P+ K L Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVL---MVKGVEPVPPHFDTMIAAYLIEPNEKKFNLDDL 426 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 KM + L+ F D + Y D + T L+K Sbjct: 427 ALKFLGYKMTSYQELM-SFSSPLFGFSFVDV-------PLEKAANYSCEDADITYRLYKT 478 Query: 177 L-IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + L + E L + + G +D + + KL E ++ ++L E+I + Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + + LF GI + T + +LA + + L Sbjct: 539 IAGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 I KL + L + V+ GR+ + G + TGR S QNLP Sbjct: 598 RKIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP--------- 647 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I+ +V AD + IE R+LA ++G++ + Sbjct: 648 ---------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLL 692 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHC 455 +AF G D++ T ++ FN ++V++E R GK++ ++ Y G Sbjct: 693 RAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEA 752 Query: 456 GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494 + + + D Q + Q + A+ Sbjct: 753 EKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAI 812 Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + GTA +++K A + + + ++Q+ +L Sbjct: 813 NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDEL 852 Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K +++ VHDE+V E PD ++ L Sbjct: 816 IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVK 869 >gi|229495891|ref|ZP_04389617.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] gi|229317204|gb|EEN83111.1| DNA polymerase type I [Porphyromonas endodontalis ATCC 35406] Length = 937 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 100/600 (16%), Positives = 204/600 (34%), Gaps = 107/600 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDL 57 + D ET PL A I + ++A ++ D E A+ L Sbjct: 366 KQFAFDTETDGLNPLT----------ASIVVASFAPEEGEAYYLPLPQDFDEACAILQPL 415 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +R+ ++ +A N+ F++ L + + +++A P N Sbjct: 416 DALMRNSEILKMAQNAKFDQKLLARYGVSSATP---LFDTLVAHYLIAPDQRHNL----- 467 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + L + G IA + A +L +Y D + R L+ L Sbjct: 468 --DTLAEQYLGYRTIAYSDLSEKKNFDLRRDVAE-----ELLVDYAAEDADVVRRLYPLL 520 Query: 178 IPLSDGER----------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E+ L + + + G ++D+ + ++ E + + ++ ++ I Sbjct: 521 REKLEQEQQEKLFWEVEMPLVGVLERMEREGVQLDVQRLHEVSEKLTNDLRETEDAIFHW 580 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + + LF G+ T S +++ + + Sbjct: 581 AGHSF-NVSSPKQVGVVLFEELGLHAKGKKTKTNTYSTSEEVLSKCVDQHPIVQKILDYR 639 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL L E V DGRLR + + TGR S QN+P + Sbjct: 640 GLKKLIGTYTEALPELVYPDGRLRTSYN-QAVTVTGRLSSSDPNLQNIPIRS-------- 690 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKA 401 +RS + + + + AD + IE R++A + ++ IKA Sbjct: 691 ----------------AMGQEIRSAFVPRSSEFTFLSADYSQIELRLMAHFSQDEHLIKA 734 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F GED++ +T A+ +N ++V+ QR+ K + Y G ++ S Sbjct: 735 FVEGEDVHRSTAARIYNVAPEEVTPLQRSHAKTANFGIIYGISAYGLSQRLNIDPSEASS 794 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKD 496 + + +N + + D ++ L ++ AV Sbjct: 795 LISSYFENYPAVRAYMDECVQKARKLGYTETLLGRRRYLPDINSRSATVRQFAERNAVNA 854 Query: 497 KLIGTACELVKKAW----------RAKHQGVLQLWKDLT-EGFACVVQEGGSISARRVAN 545 + GTA +L+K A K + ++Q+ +L + + V E ++ + + Sbjct: 855 PIQGTAADLIKVAMIRIDAKMRERNMKSRMIMQVHDELNFDAYLPEVDELRALVHQEMCQ 914 >gi|253568986|ref|ZP_04846396.1| DNA polymerase I [Bacteroides sp. 1_1_6] gi|251841005|gb|EES69086.1| DNA polymerase I [Bacteroides sp. 1_1_6] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 86/581 (14%), Positives = 180/581 (30%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57 L +D ET +P+ A + +++ + V + D E++ + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + G+ + + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKGA--LFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + D Y D + T +L Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDI---------YRYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + ++++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTSTGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + S + + S + ++ A+ Sbjct: 806 KELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906 >gi|302344141|ref|YP_003808670.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] gi|301640754|gb|ADK86076.1| DNA polymerase I [Desulfarculus baarsii DSM 2075] Length = 890 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 99/625 (15%), Positives = 194/625 (31%), Gaps = 116/625 (18%) Query: 3 KLFIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA 52 +L ID ET S P+ G+ YA A+ W + + + Sbjct: 315 QLAIDTETTSLDPIRADLVGFSLCVSPGLAYYA------PLAHDWPADEPQ----APRRQ 364 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----S 108 L Q L D ++ + N ++ + ++ + + +++A P+ Sbjct: 365 ALDLLGQALADPGLLKIGQNLKYDLNVLRRA---GLSVAGPLFDTMVADYLLNPAKASHG 421 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L+ + E F + + Y D + Sbjct: 422 LEAIAAEHLGRGVIGFEEAVGGKGKGFAQAPP----------------ERAVPYAAEDAD 465 Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + + L P D E L L + G ID + + +L + Q Sbjct: 466 VALQAAQALGPKLDEADLRRLFDELEMPLTPLLAKMERYGVLIDAEELGRLSAELDQALA 525 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 ++ I L + T L LF G+ V ++ S + LA Sbjct: 526 AGEQKIYALAGHEF-NINSTQQLGQVLFDELGLSQVKKTKKRTAYSTDMSVLAILAAQHP 584 Query: 279 LNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L + A KL + L ++ D GR+ + + TGR S QN+P Sbjct: 585 LPAEVLAYRANAKLKSTYVDALPALINPDTGRVHTSFNQC-VTATGRLSSSDPNLQNIP- 642 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 G +R C + + G+ LV AD + IE RVLA + Sbjct: 643 -----------------------VRGELGRRMRGCFVPAPGRLLVSADYSQIELRVLAHL 679 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVF 448 + + ++ A G D++ T A+ F+ V++E R K + + Y A+ Sbjct: 680 SQDPLMLQDMAEGLDVHTQTAARIFDVMPGLVTREMRVRAKTVNFGVLYGMSAFRLAREQ 739 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQD 487 + + ++ + + F+ S ++ Sbjct: 740 GVSRAEAEDIIARYLGRYQGVARFQQQNLSQCRQRGYVTTILGRRRFLPAINSSDRQARE 799 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD------LTEGFACVVQEGGSISAR 541 A+ + G+A +++K A + + + + D + + EGG Sbjct: 800 AAERVALNTPIQGSAADIIKLAMLRVDEMLTRHYPDSPMILQVHDELVFETPEGGVEQFA 859 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSR 566 + + + ++ + + R Sbjct: 860 QAVRRCMEDVLKLDVELKVDVGWGR 884 Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 6/44 (13%) Query: 602 VQAISRDILCEGMKNATK---NGYD---IVLTVHDEIVSETPDT 639 +Q + DI+ M + Y ++L VHDE+V ETP+ Sbjct: 810 IQGSAADIIKLAMLRVDEMLTRHYPDSPMILQVHDELVFETPEG 853 >gi|296135724|ref|YP_003642966.1| DNA polymerase I [Thiomonas intermedia K12] gi|295795846|gb|ADG30636.1| DNA polymerase I [Thiomonas intermedia K12] Length = 934 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 105/559 (18%), Positives = 193/559 (34%), Gaps = 88/559 (15%) Query: 5 FIDIETRSPQPLPKVGVWAYAE----QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID ET S P+ V +A A+A+ P +L + + L + Sbjct: 361 AIDTETDSLDPMRARLVGISLSVAPGEAAYLPLAHAYPGAPEQLP----MAEVLERLRPW 416 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + + N+ ++R +F G+ I T + + L S Sbjct: 417 LENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSLV---SR 471 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HL + + + C + +D A + Y D + T ++ +RL P Sbjct: 472 HLGRDDTLSYE--QVCGKGTKAITFD------QVALDVATRYSGEDADLTLQVHQRLWPQ 523 Query: 181 SDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E + + Q I G +D DL+ + + + L+ +L G Sbjct: 524 IQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQAFELAGG 583 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + LF + + + S + +LA+D L R+ ++ Sbjct: 584 AF-NLGSPKQIGEILFDRLQLPVQKKTASGAPST-DEEVLEKLAEDYPLPRVILDHRSLS 641 Query: 291 KLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ D GR+ + TGR + QN+P + Sbjct: 642 KLKSTYTEKLPQMINPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 690 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G + +D + IE R++A ++ + + AFA Sbjct: 691 --------------AEGRRIREAFIAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAA 736 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GEDI+ T A+ F +VS +QR + KV+ L Y A+ S L + Sbjct: 737 GEDIHRATAAEIFGVTPLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYID 796 Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPE---------FAVKDKLIG 500 ++ + + + E LW+ D + A+ + G Sbjct: 797 RYFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHASGPRRAAAERAAINAPMQG 856 Query: 501 TACELVKKAWRAKHQGVLQ 519 TA +L+K A A +++ Sbjct: 857 TAADLIKMAMIAVDAALMR 875 >gi|15837705|ref|NP_298393.1| DNA polymerase I [Xylella fastidiosa 9a5c] gi|9106058|gb|AAF83913.1|AE003946_4 DNA polymerase I [Xylella fastidiosa 9a5c] Length = 923 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 101/584 (17%), Positives = 194/584 (33%), Gaps = 114/584 (19%) Query: 5 FIDIETRSPQPLPKV--GVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S P+ V G+ AE A + + PV+L ++ + L Sbjct: 346 ALDTETDSLDPMQAVLIGLSFAAEVGCAAYLPFGHDYPGAPVQL----DRGQALALLQPL 401 Query: 61 LRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L D V V + ++ + ++ D + ++ TS AR + +L L Sbjct: 402 LEDAAVRKVGQHGKYDMHVLRRYGIVLAGYADDTLLESFVLTSGHARHD--MDTLARRHL 459 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +++ + +G I + TR Y D + T L Sbjct: 460 GYETMKYVDLVGKGAKQI-----PFSHVGVQEATR------------YAAEDADITLRLH 502 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P + E L + + I G +ID + + K +++ + Sbjct: 503 CVLAPKLLAEPSLERVYREIEMPLVAVLERIEANGVQIDAEELYKQSADLSRRMVIAQQK 562 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L + L++ LF + +V + S + + + L R+ Sbjct: 563 AMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTNEEA-LEAIVDQHALPRVI 620 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL L E + GR+ GA+ TGR S QN+P + Sbjct: 621 LEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGRLSSSDPNLQNIPIRTDD- 678 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R +A +G+KL+ D + IE R++A ++G+ Sbjct: 679 -----------------------GRRIRRAFVAPSGRKLIACDYSQIELRIMAHLSGDAG 715 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 + AF +G D++ A+ F ID+V+ +R K + L Y A+ Sbjct: 716 LVDAFESGVDVHCAIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGISRG 775 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEF 492 + + F + + ++ + Sbjct: 776 EAQDYIALYFDRFAGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERA 835 Query: 493 AVKDKLIGTACELVKKAW------------RAKHQGVLQLWKDL 524 A+ + GTA +++K+A R + +LQ+ +L Sbjct: 836 AINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHDEL 879 Score = 44.0 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551 A+ ++ G + V R + + F Q G S A+ + Sbjct: 729 AIAAEVFGRGIDEVTLNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 788 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YLN+ S +R + N +Q + DI Sbjct: 789 AGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 848 Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M G+ ++L VHDE+V E + + V + + M Sbjct: 849 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 902 >gi|29348669|ref|NP_812172.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] gi|29340574|gb|AAO78366.1| DNA polymerase I [Bacteroides thetaiotaomicron VPI-5482] Length = 949 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 86/581 (14%), Positives = 180/581 (30%), Gaps = 108/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57 L +D ET +P+ A + +++ + V + D E++ + ++ Sbjct: 377 KILSLDTETTGTEPM----------DAELVGMSFSITENQAFYVPVPDNREEALKIVNEF 426 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + G+ + + +++A P + Sbjct: 427 RPVFENENSLKVGQNIKYDMIVLENY-GVQVKGA--LFDTMIAHYVLQPELRHGMDYLAE 483 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + D Y D + T +L Sbjct: 484 IYLHYQTIHIDE---LIGPKGKNQKNMRDLDPKDI---------YRYACEDADVTLKLKN 531 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L D E L + I G +D + + + + ++++++I Sbjct: 532 VLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALKQSSVHFTAQMQRIEQEIY 591 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 592 ELAGETFNIA-SPKQVGEVLFDKLRIIEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILE 650 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 651 HRGLKKLLGTYIDALPQLINPRTGRVHTSFN-QTVTSTGRLSSSNPNLQNIPIR------ 703 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I G AD + IE R++A ++ + I Sbjct: 704 ------------------DENGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMI 745 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T AK + + V + R K + Y G A+ Sbjct: 746 DAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEA 805 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + S + + S + ++ A+ Sbjct: 806 KELIDGYFETYPSVKAYMEKSIQIAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 865 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + G+A +++K A +Q +LQ+ +L Sbjct: 866 NAPIQGSAADIIKVAMARIYQRFQTEGIQAKMILQVHDELN 906 >gi|148270302|ref|YP_001244762.1| DNA polymerase I [Thermotoga petrophila RKU-1] gi|147735846|gb|ABQ47186.1| DNA polymerase I [Thermotoga petrophila RKU-1] Length = 893 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 104/580 (17%), Positives = 191/580 (32%), Gaps = 108/580 (18%) Query: 5 FIDIETRS----PQPLPKVGV-WAYAEQAVITLC---AYAWDDEPVKLWDRTEQSAMPSD 56 ID+ET S + + + + E I L A D++ V Sbjct: 321 AIDLETSSLDPFECDIAGISLSFKPKEAYYIPLHHRNAQNLDEKEV-----------LKK 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L + L D V N F+ + + I +++A P+ K L Sbjct: 370 LKEILEDPGAKIVGQNLKFDYKVL---MVKGIEPVPPHFDTMIAAYLIEPNEKKFNLDDL 426 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 KM + L+ F D + Y D + T L+K Sbjct: 427 ALKFLGYKMTSYQELM-SFSSPLFGFSFVDV-------PLEKAANYSCEDADITYRLYKT 478 Query: 177 L-IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + L + E L + + G +D + + KL E ++ ++L E+I + Sbjct: 479 LSLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYR 538 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + + LF GI + T + +LA + + L Sbjct: 539 IAGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEY 597 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 I KL + L + V+ GR+ + G + TGR S QNLP Sbjct: 598 RKIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP--------- 647 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I+ +V AD + IE R+LA ++G++ + Sbjct: 648 ---------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLL 692 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHC 455 +AF G D++ T ++ FN ++V++E R GK++ ++ Y G Sbjct: 693 RAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEA 752 Query: 456 GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494 + + + D Q + Q + A+ Sbjct: 753 EKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAI 812 Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + GTA +++K A + + + ++Q+ +L Sbjct: 813 NTPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDEL 852 Score = 40.5 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K +++ VHDE+V E P+ ++ L Sbjct: 816 IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVK 869 >gi|288928711|ref|ZP_06422557.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] gi|288329695|gb|EFC68280.1| DNA polymerase type I [Prevotella sp. oral taxon 317 str. F0108] Length = 927 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 87/589 (14%), Positives = 189/589 (32%), Gaps = 110/589 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQY 60 + +D ET S + A + ++A +++ V + ++ ++ D + Sbjct: 357 ISLDTETTSTNAI----------DAQLVGLSFAVEEKKAYYVPVPEQANEAQNIVDKFKA 406 Query: 61 L-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116 + + + V N ++ + + I + + +++A P ++ Sbjct: 407 IYENPNTLKVGQNIKYDLEVLRNY---GIMLQGPLFDTMIAHYLLQPELRHNMDFMAEVY 463 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E + ALI K + + Y D + T +L Sbjct: 464 LNYETVHID----ALIGAKGKTQKNMRELAPSEV---------YAYACEDADITLQLKNV 510 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P ++ E L + + G RID + + ++ + +L+++I + Sbjct: 511 LQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ 570 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF I T + + S + L + Sbjct: 571 AAGKTF-NVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDY 629 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 A+ KL + L + ++ G + + + TGR S QN+P Sbjct: 630 RALKKLLGTYVDALPKLINPRTGHIHTSFN-QAVTATGRLSSSDPNLQNIP--------- 679 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G +R C I G + AD + IE RV+A ++ + + Sbjct: 680 ---------------VRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T AK ++ P+ +V++++R K + Y G A + Sbjct: 725 AFREGYDIHSATAAKIYDKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEAK 784 Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495 + + + + + S + ++ A+ Sbjct: 785 QLIDGYFKMFPQVRDYMEQAKETAKANGYVETFFHRRRYLPDINSSNATVRGIAERNAIN 844 Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534 + G+A +++K A + + +LQ+ +L +E Sbjct: 845 APIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKE 893 >gi|198274096|ref|ZP_03206628.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] gi|198273174|gb|EDY97443.1| hypothetical protein BACPLE_00233 [Bacteroides plebeius DSM 17135] Length = 931 Score = 261 bits (668), Expect = 2e-67, Method: Composition-based stats. Identities = 88/589 (14%), Positives = 184/589 (31%), Gaps = 104/589 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57 +D ET P+ A + ++++ + V + E++ + + Sbjct: 359 KFFSLDTETTGIDPIT----------AELVGMSFSFAENQAFYVPVPANREEALTIVNIF 408 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + + + N ++ I+ G+ + K + T + Sbjct: 409 KPAFENPDSLKIGQNIKYDLIMLANY-GVTLKGKMF-DTMIAHYVLQPELRHGMD----Y 462 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 +E K E K KG D + +Y D + T +L + L Sbjct: 463 LAEIYLKYETIKIEELIGAKGKKQGNMRDLAP-------EAVYKYACEDADVTLKLKQVL 515 Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + E L + + G RID + + + +++E++ +L Sbjct: 516 ENELETNGVKKLFEEIEMPLVPVLAYMERNGVRIDTEALKETSRHFTARMNQIEEEVHQL 575 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF I T + + S + L + Sbjct: 576 AGMEFNIA-SPKQVGEVLFDRLKIVEKAKKTKTGQYVTSEEVLESLRGKHEIVGKILEHR 634 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 635 GLKKLLGTYIDALPQLINPATGRIHTSFN-QTVTATGRLSSSNPNLQNIPIRNED----- 688 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I G + AD + IE R++A ++ + I+A Sbjct: 689 -------------------GKEIRKAFIPDEGCEFFSADYSQIELRIMAHLSNDPHMIEA 729 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +DI+ T AK + +++V++EQR+ K + Y G A+ Sbjct: 730 FQKDQDIHAATAAKIYKVKLEEVTREQRSKAKTANFGIIYGISVFGLAERLNVDRKEAKA 789 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKD 496 + + +N + + D E+ ++ A+ Sbjct: 790 LIDGYFENYPNVKAYMDQSIQEAREKGYIETIFKRKRYLPDINSKNAVVRGYAERNAINA 849 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 + G+A +++K A +Q +LQ+ +L +E Sbjct: 850 PIQGSAADIIKVAMIRIYQRFQEEGIRSKMILQVHDELNFSVLPEEKEK 898 >gi|114777011|ref|ZP_01452031.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] gi|114552532|gb|EAU54992.1| DNA polymerase I [Mariprofundus ferrooxydans PV-1] Length = 917 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 102/574 (17%), Positives = 174/574 (30%), Gaps = 111/574 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS-----AMPSDL- 57 + +D ET S Q A A + ++A +S P L Sbjct: 336 IALDTETTSLQ----------AHDAELVGLSFATRAGEAWYIPVGHRSTDLLVPAPQQLP 385 Query: 58 --------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLP 106 L D HN ++ + ++ GI++ + +LA P Sbjct: 386 LQHVLAALKPLLEDAAKRKCGHNLKYDAQVLRRA-GIELAGIA-ADSMLLAYCLYPAKYP 443 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 SL + + H T E A+ + D P Y D Sbjct: 444 PSLDSVAED-YLNYHCTPYSEVAGKGAK--QVCFDEVPVSIA-----------TPYACED 489 Query: 167 VEATREL----------FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + L RL + E L + I G +D +++ L Sbjct: 490 ADIALRLTGLLSAQLLTEGRLTRHDEIELPLSQVLADIEWTGAHVDAEMLAGLSTGFGLR 549 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 +L+ I + + L + LF I ++ + + +LA + Sbjct: 550 IAELESQIHAAAGEKF-NIQSPKQLGVLLFETLAIPGGKKTKSG-QWATGQEVLEKLADE 607 Query: 277 LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + RL + KL + L + + + GR+ + + TGR S QN+ Sbjct: 608 HEVPRLILQVRQLAKLKSTYTDALPKLIHRTTGRVHTSFN-QAITTTGRLSSSDPNLQNI 666 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R IA G L+ AD + IE R++A Sbjct: 667 PIRS------------------------AEGREIRKAFIAEEGHTLLAADYSQIELRLMA 702 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 +G+ AFANGEDI+ T A ++ VS E R K + + Y AK Sbjct: 703 HFSGDAALCAAFANGEDIHAATAAAVNGIALEDVSGEMRRRAKAINFGILYGMSAFGLAK 762 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WM 485 + + + S F D + Sbjct: 763 QLNISRGEAQTFIDTYFERYPSVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSSNGMR 822 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A+ L G+A +++K A H+ + Q Sbjct: 823 RAYAERTAINAPLQGSAADIIKVAMIHLHRRLRQ 856 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 11/124 (8%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGKL 597 A+ + + + L +R Y + G Y+ +S R Y + Sbjct: 770 EAQTFIDTYFERYPSVRGFMDDTLVLAREQGYVETLLGHRVYVPEISSSNGMRRAYAERT 829 Query: 598 TENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 N +Q + DI+ M I+L VHDE++ E P + + ++ Sbjct: 830 AINAPLQGSAADIIKVAMIHLHRRLRQEAPAAAIILQVHDELIVEAPVDQ---IDAVSAI 886 Query: 651 MTKN 654 M + Sbjct: 887 MRQT 890 >gi|323529237|ref|YP_004231389.1| DNA polymerase I [Burkholderia sp. CCGE1001] gi|323386239|gb|ADX58329.1| DNA polymerase I [Burkholderia sp. CCGE1001] Length = 913 Score = 261 bits (667), Expect = 2e-67, Method: Composition-based stats. Identities = 109/580 (18%), Positives = 192/580 (33%), Gaps = 109/580 (18%) Query: 5 FIDIETRSPQPLPK--VGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ A A A+ D PV+L + + + L + Sbjct: 339 SFDTETTSLDPMTAQIVGLSFAVEAGHAAYVPVAHRGPDAPVQLP----RDEVLAKLKPW 394 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + GI++ T + + LAL Sbjct: 395 LESAKHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVLESHRPHDMDNLALRHLG 452 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 K E+ GK F + ++D T L + Sbjct: 453 VKTIKYEDVAGKGAQQIGFDEVALDKAAEYAAEDAD----------------ITLRLHQT 496 Query: 177 LIPLSDGERDLWLLDQT-----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E+ L + + + G ID + + IA +L+ + Sbjct: 497 LYPQLAAEKTLEHVYRDIEVPTSRVLRKMERTGVLIDAEKLRLQSSEIAARLIELESEAY 556 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L G + + F + +V + S + +LA+D L ++ Sbjct: 557 VLAGGEF-NLGSPKQIGQIFFERLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKILLE 614 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V++ GR+ + TGR + QN+P + Sbjct: 615 HRGLSKLKSTYTDKLPRMVNASTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 668 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G KLV AD + IE R++A I+G++ + Sbjct: 669 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF+ GEDI+ T A+ F+ +VS +QR + KV+ L Y A Sbjct: 710 RAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAA 769 Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWM----------QDQYPEFAV 494 L + ++ + + D E LW+ + A+ Sbjct: 770 KLYIDRYFARYPGVARYMDETRLSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 829 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA +L+K + A + ++Q+ +L Sbjct: 830 NAPMQGTAADLIKLSMIAVQKWIEESNIGTRMIMQVHDEL 869 >gi|167583897|ref|ZP_02376285.1| DNA polymerase I [Burkholderia ubonensis Bu] Length = 917 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 107/592 (18%), Positives = 191/592 (32%), Gaps = 115/592 (19%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60 D ET S P+ VG+ E +A A+ P D EQ + L + Sbjct: 345 DTETTSLDPMTARLVGLSFSVEPGKAAYLPVAHR---GP----DLPEQLPLDEVLARLKP 397 Query: 61 -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118 L V + ++ + GI++ T + + + LAL Sbjct: 398 WLESADRKKVGQHLKYDAQVLANY-GIELSGIE-HDTLLESYVLESHRTHDMDSLALRHL 455 Query: 119 SEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 K E+ GK F + ++ T +L Sbjct: 456 GVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----------------ITLQLHH 499 Query: 176 RLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P + E + ++ + + G ID + IA +L+ Sbjct: 500 ALYPQVAREPGLERVYREIEMPVSIVLRKMERTGVLIDDARLQAQSTEIATRLVELEAQA 559 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L G + + F + +V + S + +LA+D L +L Sbjct: 560 YELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLL 617 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 618 EHRGLSKLKSTYTDKLPRMVNPETGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 673 --------------------AEGRRIREAFIASPGHQIVSADYSQIELRIMAHISGDASL 712 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 ++AF+NGEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 713 LRAFSNGEDIHRATAAEVFGVTPLEVTADQRRIAKVINFGLIYGMSAFGLASNLGITRDA 772 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFA 493 L + ++ + + + +A + LW+ + A Sbjct: 773 AKLYIDRYFARYPGVAQYMEDTRAIAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAA 832 Query: 494 VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 + + GTA +L+K + A + ++Q+ +L Sbjct: 833 INAPMQGTAADLIKLSMIAVDDWLTRDGLASRMIMQVHDELVLEVPEAELPR 884 >gi|330821221|ref|YP_004350083.1| DNA polymerase I [Burkholderia gladioli BSR3] gi|327373216|gb|AEA64571.1| DNA polymerase I [Burkholderia gladioli BSR3] Length = 919 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 107/588 (18%), Positives = 197/588 (33%), Gaps = 95/588 (16%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E A A+ D P +L + + + L + Sbjct: 345 SFDTETTSLDPMVAQIVGISLSTEPGSAAYIPVAHRGPDAPEQLP----RDEVLAKLKPW 400 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + I + T + + + LAL Sbjct: 401 LESAERRKVGQHLKYDAQVLANY-EIALNGIE-HDTLLESYVLESHRTHDMDSLALRHLG 458 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDC------TRANHVQAWQLFGEYCKRDVEAT 170 K EE GK F + +++ T H+ + V Sbjct: 459 VKTIKYEEVAGKGAQQIGFDEVPLETAAAYAAEDADITLQLHLAMYPQ--------VARE 510 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L + ++ E + L+ + + G ID + K IA +L+ + +L G Sbjct: 511 PGLKRV---YAEIEMPVSLVLRRMERTGVLIDSARLDKQSHEIAVRLIELEREAYELAGG 567 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + F + +V + S + +LA+D L +L + Sbjct: 568 EF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHRGLS 625 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L +++ GR+ + TGR + QN+P + Sbjct: 626 KLKSTYTDKLPRMINARTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 674 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IAS G ++V AD + IE R++A I+ ++ ++AF+ Sbjct: 675 --------------AEGRRIREAFIASPGCRIVSADYSQIELRIMAHISEDESLLRAFSQ 720 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GEDI+ T A+ F +VS +QR I KV+ L Y A L + Sbjct: 721 GEDIHRATAAEVFGVTPLEVSNDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYID 780 Query: 461 QFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLI 499 ++ + + + +A + LW+ + A+ + Sbjct: 781 RYFARYPGVANYMETTRAVAKDKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 840 Query: 500 GTACELVK------KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 GTA +L+K W + + ++ + + V E R Sbjct: 841 GTAADLIKLSMIAVDGWLERDKLRSRMIMQVHDELVLEVPEDELALVR 888 >gi|329847238|ref|ZP_08262266.1| DNA polymerase I [Asticcacaulis biprosthecum C19] gi|328842301|gb|EGF91870.1| DNA polymerase I [Asticcacaulis biprosthecum C19] Length = 959 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 73/508 (14%), Positives = 152/508 (29%), Gaps = 89/508 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + ++ V N ++ + K+ GID+ GL + L Sbjct: 427 LKPVLENRNILKVGQNIKYDLSVLKRY-GIDVAPYDDTMLMSYVVEGGLHGHGMDELSQL 485 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + ++ ++ A + +Y D + T L+ Sbjct: 486 HLGHTPIPFKQVAGSGKTL-------------KSFKFVALKEATQYAAEDADVTLRLWHV 532 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P ER + + G R+D ++ L + ++++ Sbjct: 533 LKPRLVRDRLNTVYETLERGMPKALSEMELNGIRVDPQVLRNLSQDFGTRMNAIEQEAHA 592 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----------- 275 + L + F + + + + +A+ Sbjct: 593 HLGRPF-NLNSPQQLGVVFFDEMKLPGGKRTASG-QWATDVKVLEDIAEGKNGTGAGQTL 650 Query: 276 -DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L+L+ + + L E R+ + ++ TGR + QN+P + Sbjct: 651 AKLLLDYRQMAKLKGTYTDALVEYADPQTQRIHTSFHL-ASTTTGRLASNEPNLQNIPIR 709 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R+ IA G KL+ AD + IE R+LA I Sbjct: 710 T------------------------GEGRKIRTAFIAKPGCKLISADYSQIELRLLAHIG 745 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 + KAF++G+DI+ T ++ F P+ ++ E R K + + Y G A Sbjct: 746 DIEQLKKAFSDGQDIHAMTASEMFGVPMADMTSEIRRRAKAINFGIIYGISGFGLANQLG 805 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 ++ + + + D + ++ Sbjct: 806 IDQGEASRYIKTYFERFPGIKDYMDATKQFLRDNGFVQTLMGRKIHIPEINGKGGAIKAF 865 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQG 516 A+ + GTA +++++A Sbjct: 866 AERAAINAPIQGTAADIIRRAMMRMQPR 893 >gi|296533832|ref|ZP_06896368.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] gi|296265850|gb|EFH11939.1| DNA-directed DNA polymerase I [Roseomonas cervicalis ATCC 49957] Length = 968 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 88/500 (17%), Positives = 153/500 (30%), Gaps = 84/500 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 L L D V+ + HN+ ++ + + +DI + G + Sbjct: 441 EALRPLLADPAVLKILHNAKYDLEVLARPEHGALDITPVDDTMLISYSMDAGRHGHGMDE 500 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + +E + I +A Y D + T Sbjct: 501 LSLRHLGHRPIPFDEVTGT----GRARIPFSQVALDKATA---------YAAEDADVTLR 547 Query: 173 LFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L++ L P ER + + + + G ++D + ++ E +Q L++ Sbjct: 548 LWQALRPRLRPDRSLALYEQVERRMVAVLRDMEMAGIKVDGAELARIGEDFSQRMVVLEQ 607 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA-KDLILNR 281 +I +L + L LF + + S + LA + L R Sbjct: 608 EIHELAGKPF-NVGSPKQLGEILFDEQKLPGGKRGKNG-AWGTDASVLEDLAARGHELPR 665 Query: 282 LASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + KL + L+ + DGR+ + TGR S QN+P + Sbjct: 666 RVLHWRQLAKLKSTYVEGLAAQIDRRDGRVHTDFSM-AVTSTGRLSSTEPNLQNIPIRT- 723 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A G L+ AD + IE R+LA +A Sbjct: 724 -----------------------EEGVRIRRAFVAEPGHVLLAADYSQIELRLLAHLADV 760 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 AFA GEDI+ T A F DKV KE R K + + Y A Sbjct: 761 PSLRDAFAKGEDIHSRTAADIFGLAPDKVDKEARRRAKTINFGIIYGMSAFGLAARLGIG 820 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-----------LWM----------QDQYP 490 + + + ++E+ LW+ + Sbjct: 821 PGEARGIIDAYFSQYPGILEEMERLKSEAREKGYVLSPFGRKLWIDGIQAKEQARRGNAE 880 Query: 491 EFAVKDKLIGTACELVKKAW 510 A+ G A E++K+A Sbjct: 881 RAAINAPFQGGAAEIIKRAM 900 >gi|282879100|ref|ZP_06287860.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] gi|281298834|gb|EFA91243.1| DNA-directed DNA polymerase [Prevotella buccalis ATCC 35310] Length = 920 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 101/591 (17%), Positives = 194/591 (32%), Gaps = 110/591 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQSAMPSD 56 L +D ET S P+ +A + ++A EP V + + E + Sbjct: 348 KILSLDTETTSTNPM----------EAELVGLSFAV--EPKKAFYVPVPAKHEDAVNLVK 395 Query: 57 LLQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACL 114 + + L +E ++ V N ++ + + I K + +++A P + Sbjct: 396 IFKPLYENEEIVKVGQNIKYDMEVLRNY---GIELKGPMFDTMIAHYVLQPELRHNMDYM 452 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 A + + T E LI K + T Y D + T +L Sbjct: 453 AEVYLNYQTIHIE--KLIGERGKNQKNMRDLSPTDV---------YLYACEDADITLQLK 501 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G RID + + + E + L+ I Sbjct: 502 NALEPKLKEAGVADLFYQMEMPLVNVLAEMEMNGVRIDTEALKETSENFTKRMLDLEHQI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + + LF I T + + S + + A + L Sbjct: 562 HELAGESF-NVSSPKQVGDILFGKLQIAEKPKKTKTGQFVTSEEELQKYAAGNEIVTLIL 620 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + ++ G + + + TGR S QN+P Sbjct: 621 DYRGLKKLLGTYVDALPKLINPRTGHIHTSFN-QTVTATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G +R C I +G AD + IE RV+A ++G+ Sbjct: 673 -----------------VRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+AF +G DI+ T AK + + V++++R K + Y G A+ + Sbjct: 716 IEAFQHGYDIHAATAAKIYGKDMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRNE 775 Query: 455 CGLDLQQFS----------QNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFA 493 + + + K+T+ + + S + ++ A Sbjct: 776 AKQLIDGYFTTFPQVYDYMEQAKATAREQGYVETFFHRRRYLPDINSRNATVRGFAERNA 835 Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534 + + G+A +++K A + + +LQ+ +L +E Sbjct: 836 INAPIQGSAADIIKVAMIRIYKRFKRENIQSKMILQVHDELNFSVLPEEKE 886 >gi|219850431|ref|YP_002464864.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] gi|219544690|gb|ACL26428.1| DNA polymerase I [Chloroflexus aggregans DSM 9485] Length = 936 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 108/548 (19%), Positives = 185/548 (33%), Gaps = 87/548 (15%) Query: 49 EQSAMP-SDLLQYL----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 E +P +D++ L D + AHN+ F+ + +GI + + T + A Sbjct: 396 EGEQLPLADVVAALGPLFADPNIPKFAHNAKFDAEVLA-GVGIQVAGLAF-DTMIAAAML 453 Query: 104 GLPSSLKNACLA-LNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 G LK+ L E + G I F I+ Sbjct: 454 GKRQGLKDLAFYELKLPEPPTTIEDLIGRGSKQI-SFAAVPIEQAAPYAAADALHTLLLT 512 Query: 159 FGEYCKRDVE-ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + + A R+L+ R E L + + G +D + + +L + AQ Sbjct: 513 ETLRGQLTTDTALRDLYYR------VELPLIDVLTDMELTGILLDHEYLRELGKRFAQRI 566 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS---------ILSHS 268 +L E I G + L LF GI+ D LKS + S Sbjct: 567 AELTEQIYAKAGGPF-NINSGQQLNEVLFERLGINPRDYGLSKLKSGGYSITAEVLEELS 625 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + +A D++ R + ++ L + V+ GR+ + GA+ TGR S Sbjct: 626 QLYPIAADILAYRQ-LTKLKSTYIDALPQLVNPRTGRIHTSYNQIGAA-TGRLSSNNPNL 683 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R +A+ G + V AD + IE R Sbjct: 684 QNIPVRT------------------------EEGREIRRAFVAAPGHRFVAADYSQIELR 719 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443 VLA I+G++ I AF G DI+ T ++ F D+V K QR + K + + Y G Sbjct: 720 VLAHISGDENLIAAFQQGLDIHAATASRLFGVAPDQVDKNQRRVAKTVVFGVIYGISAFG 779 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQYPE----------- 491 A+ + + + D A H ++Q + Sbjct: 780 LAQRLGIERDLARQLIDNLFEQFPGIRRYIDQTLAFGRQHGYVQTLFGRRRVMEDLRASG 839 Query: 492 --------FAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++K A H+ +L + + E Sbjct: 840 ARRAAAEREAINAPIQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEV 899 Query: 538 ISARRVAN 545 +A + Sbjct: 900 PAAAHLLR 907 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M + + G ++L VHDE+++E P+ + L +M+ Sbjct: 854 IQGTAADIMKMAMVYVHRALRERGLRTRLLLQVHDELIAEAPEEEVPAAAHLLREVMSNT 913 >gi|170289072|ref|YP_001739310.1| DNA polymerase I [Thermotoga sp. RQ2] gi|170176575|gb|ACB09627.1| DNA polymerase I [Thermotoga sp. RQ2] Length = 893 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 100/579 (17%), Positives = 188/579 (32%), Gaps = 106/579 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57 ID+ET S P I + ++ + ++ + L Sbjct: 321 AIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L D V N F+ + + + +++A P+ K L Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVL---MVKGVEPVPPHFDTMIAAYLLEPNEKKFNLDDLA 427 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 KM + L+ F D + Y D + T L+K L Sbjct: 428 LKFLGYKMTSYQELM-SFSSPLFGFSFADV-------PVEKAANYSCEDADITYRLYKIL 479 Query: 178 -IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + L + E L + + G +D + + KL E ++ ++L E+I ++ Sbjct: 480 SLKLHEADLENVFYKIEMPLVSVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRI 539 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF GI + T + +LA + + L Sbjct: 540 AGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYR 598 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 I KL + L + V+ GR+ + G + TGR S QNLP Sbjct: 599 KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP---------- 647 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I+ +V AD + IE R+LA ++G++ +K Sbjct: 648 --------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLK 693 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHCG 456 AF G D++ T ++ FN ++V++E R GK++ ++ Y G Sbjct: 694 AFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAE 753 Query: 457 LDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVK 495 + + + D Q + Q + A+ Sbjct: 754 KMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAIN 813 Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + GTA +++K A + + + ++Q+ +L Sbjct: 814 TPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDEL 852 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K +++ VHDE+V E PD ++ L Sbjct: 816 IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPDEEKDALVELVK 869 >gi|258543204|ref|YP_003188637.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256634282|dbj|BAI00258.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01] gi|256637342|dbj|BAI03311.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-03] gi|256640394|dbj|BAI06356.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-07] gi|256643451|dbj|BAI09406.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-22] gi|256646506|dbj|BAI12454.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-26] gi|256649559|dbj|BAI15500.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-32] gi|256652545|dbj|BAI18479.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655603|dbj|BAI21530.1| DNA polymerase I [Acetobacter pasteurianus IFO 3283-12] Length = 933 Score = 261 bits (666), Expect = 3e-67, Method: Composition-based stats. Identities = 83/493 (16%), Positives = 152/493 (30%), Gaps = 85/493 (17%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSK---RWICTSVLARTNGLPSSLKNACLALNF 118 +D+ V+ + HN+ F+ ++ GI + S +++ GL + A++ Sbjct: 413 QDDAVLKIFHNAKFDLLILDHA-GIPLSSITAVDDTMLISYSQSAGLHGQGMDELSAMHL 471 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 S + + P +Y D + T L+ L Sbjct: 472 SHTPISYDSVTGTGR--NRLPFAQVPVATA-----------TKYAAEDADVTLRLWHVLH 518 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P ER L + + G +D + +L + + ++ DI + Sbjct: 519 PTLRTNKALVLYEQIERPLSAILADMEKAGIAVDRAELDRLSKDFEARMQGMENDIYEAA 578 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRL 282 + L LF G+ + S + LA IL Sbjct: 579 GRQF-NIGSPKQLGEILFDEMGLKGGKRGKAG-AWSTDSSVLQDLADQGHDLPARILAWR 636 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + L + R+ + Q + TGR S QN+P + Sbjct: 637 QLAKLKSTYTDALLRQAGRNDRVHTSFQM-AITSTGRLSSTDPNLQNIPVRT-------- 687 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA GKKL+ AD + IE R+LA +A +AF Sbjct: 688 ----------------EEGTRIRQAFIAPPGKKLISADYSQIELRLLADVANIPALREAF 731 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLD 458 G+DI+ T ++ FN P++ + R K + + Y A K A Sbjct: 732 QLGQDIHARTASEVFNIPLEGMDALTRRRAKAINFGIIYGISAFGLGKQLGIPAGEARTY 791 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 + + + + + E+ + A+ Sbjct: 792 IDAYFARYPGIRDYMERMREEARTHGYVLTPFGRRCYVPGIHEKSAARRQYAERQAINAP 851 Query: 498 LIGTACELVKKAW 510 L G A +++K+A Sbjct: 852 LQGGAADIIKRAM 864 >gi|187921421|ref|YP_001890453.1| DNA polymerase I [Burkholderia phytofirmans PsJN] gi|187719859|gb|ACD21082.1| DNA polymerase I [Burkholderia phytofirmans PsJN] Length = 913 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 109/580 (18%), Positives = 195/580 (33%), Gaps = 109/580 (18%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E +A A+ D PV+L + + + L + Sbjct: 339 SFDTETTSLDPMTAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLARLKPW 394 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + GI++ T + + + LAL Sbjct: 395 LESAEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSLALRHLG 452 Query: 120 EHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 K EE GK F + ++D T L + Sbjct: 453 VKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDAD----------------ITLRLHQA 496 Query: 177 LIPLSDGERDLWLLDQT-----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L P E+ L + + + G ID + + IA +L+ + Sbjct: 497 LYPQVTAEKTLEYVYRAIELPTSRVLRKMERTGVLIDAEKLRLQSSEIATRLIQLESEAY 556 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L G + + F + +V + S + +LA+D L ++ Sbjct: 557 VLAGGEF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDYPLPKILLE 614 Query: 286 GSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V++ GR+ + TGR + QN+P + Sbjct: 615 HRGLSKLKSTYTDKLPRMVNATTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT----- 668 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G KLV AD + IE R++A I+G++ + Sbjct: 669 -------------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLL 709 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF+ GEDI+ T A+ F+ +VS +QR + KV+ L Y A Sbjct: 710 RAFSQGEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLAANLGITRDAA 769 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAV 494 L + ++ + + D + + LW+ + A+ Sbjct: 770 KLYIDRYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAI 829 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA +L+K + A + ++Q+ +L Sbjct: 830 NAPMQGTAADLIKLSMIAVQNWIEESKIGTRMIMQVHDEL 869 >gi|269468158|gb|EEZ79860.1| DNA polymerase I [uncultured SUP05 cluster bacterium] Length = 916 Score = 261 bits (666), Expect = 4e-67, Method: Composition-based stats. Identities = 102/567 (17%), Positives = 194/567 (34%), Gaps = 87/567 (15%) Query: 7 DIETRSPQPLPKVG----VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D+ET S V+ + + + + D P +L D + + + L L+ Sbjct: 344 DLETTS-LDYMNAAIVGWVFLVDKDSFYVPVGHDYLDAPKQL-DF-DDALL--TLKPILQ 398 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNFSEH 121 DE++ V N ++ + ID+ T V + + + L++++ H Sbjct: 399 DESINKVGQNLKYDAHVLANY-QIDLNGISD-DTMVKSYVLNSVATRHNMDDLSMHYLNH 456 Query: 122 LTK-----MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 T +GK I G + PY C V + D+ +L K Sbjct: 457 QTIHFSDVAGKGKKQITFNQVGLEAAFPYAC---EDVIVTHELNKVLDEDIVQYPKLVKL 513 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E L + + G ID L+ Q + ++ ++ +L Sbjct: 514 YQVL---EMPLIKVLLRMERNGVEIDAGLLNAQQLDVVKQMNEIQSQAFELAGDAFNLE- 569 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----DLILNRLASSGSAILKL 292 ++ LF G+ L + + ++ +L DLIL+ + L Sbjct: 570 SPKQIQQILFSEEGLGLEAKKKTPKGAPSTNEEALKLLDHPLVDLILSYRTLTKLNSTYL 629 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + + + + T + TGR S QN+P + Sbjct: 630 EALPKQIDLNTKRLHTSYHQAVTATGRLSSSNPNLQNIPIRT------------------ 671 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G ++ AD + IE R++A I+ + I+AF N D++ T Sbjct: 672 ------ELGARIRGAFIAGKGNVIIAADYSQIELRIMAHISQDKSLIEAFNNDVDVHSAT 725 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468 + FN PI++V+K+ R K + L Y AK + + + +N Sbjct: 726 ASMMFNVPIEEVNKDHRRNAKAINFGLIYGMSAFGLAKQINVSRTEAKQYIDAYFENYPG 785 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + D Q + + +Q A+ + G++ +++K Sbjct: 786 VLNYMDNIREAAKVQGYVETIMGRRLYLPQINAKNKMLQQHALRTAINAPMQGSSADIIK 845 Query: 508 KAWRAKHQ----------GVLQLWKDL 524 KA H+ ++Q+ +L Sbjct: 846 KAMLDVHEWIGDGNDEIKMIMQVHDEL 872 >gi|293604245|ref|ZP_06686653.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] gi|292817470|gb|EFF76543.1| DNA polymerase I [Achromobacter piechaudii ATCC 43553] Length = 905 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 106/569 (18%), Positives = 191/569 (33%), Gaps = 100/569 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S + VG+ E A A+ D +L ++ + + L + Sbjct: 333 ALDTETTSLDQMQARLVGLSLAVEPGVACYIPVAHRGPDGATQLP----KAEVLARLKPW 388 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D + + H++ ++ +F GI + T + A + LA + Sbjct: 389 LEDASRAKLLHHAKYDAHVFANE-GIALAGITD-DTMLQAYVLESHRGVGLNDLAQRYL- 445 Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 G++ I+ C +D + G Y D + T +L L Sbjct: 446 -------GRSGISYEDLCGKGAKQIGFDEVAVD------KAGHYAAEDADFTLQLHHVLR 492 Query: 179 PLSDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P+ L + Q TI G ++D + + + + QE +L++ +L Sbjct: 493 PMVAANEGLDRIYQLEIKVSAVLTTIERNGVKVDAEELGRQSHKLGQEMLRLEQKAYELA 552 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF + +V + S +T+LA D L ++ Sbjct: 553 GQPF-NLNSPKQLGEILFDRMQLPVVRKTASGAPST-DEDVLTKLALDYPLPQVLLEYRG 610 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L ++ GR+ A TGR + QN+P + + Sbjct: 611 LSKLKSTYTDKLPRMINPATGRVHTRYS-QAAVITGRLASSDPNLQNIPVRTEA------ 663 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR IA G L+ AD + IE R++A ++ + AF Sbjct: 664 ------------------GRRVREAFIAEQGM-LLSADYSQIELRIMAHVSDDANLQSAF 704 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 A GEDI+ T A+ F + VS +QR K + L Y G A Sbjct: 705 AAGEDIHRATAAEVFGVALADVSTDQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAY 764 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 + ++ + + + + + + A+ Sbjct: 765 IDRYFARYPGVAMYMENTRRLAREQGYVETVFGRRLQLPEIRGASGPRRQGAERAAINAP 824 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + GTA +L+K A A +Q W + + Sbjct: 825 MQGTAADLIKLAMVA-----VQDWLEAEK 848 >gi|134292957|ref|YP_001116693.1| DNA polymerase I [Burkholderia vietnamiensis G4] gi|134136114|gb|ABO57228.1| DNA polymerase I [Burkholderia vietnamiensis G4] Length = 917 Score = 260 bits (665), Expect = 4e-67, Method: Composition-based stats. Identities = 110/582 (18%), Positives = 191/582 (32%), Gaps = 117/582 (20%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60 D ET S P+ VG+ E +A A+ P D EQ + L + Sbjct: 345 DTETTSLDPMTARLVGLSFSVEPGKAAYLPVAHR---GP----DLPEQLPLDDVLARLKP 397 Query: 61 -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALN- 117 L V + ++ + DI T + + + LAL Sbjct: 398 WLEAADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVLESHRTHDMDSLALRH 454 Query: 118 FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K E+ GK F + ++D T +L Sbjct: 455 LGVKTIKYEDVAGKGAKQIGFDEVALDQAAAYAAEDAD----------------ITLQLH 498 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P + E + L+ + + G ID L+ IA +L+ Sbjct: 499 HVLYPQIAREAGLERVYREIEMPVSLVLRKMERTGVLIDDALLHAQSNEIATRLIELEGQ 558 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 +L G + + F + +V + S + +LA+D L +L Sbjct: 559 AYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLL 616 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 617 LEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLASNEPNLQNIPVRT--- 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 673 ---------------------AEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDAS 711 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 ++AFA+GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 712 LLRAFAHGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRD 771 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEF 492 L + ++ + + + +A + LW+ + Sbjct: 772 AAKLYIDRYFARYPGVAQYMEDTRAAAKDQGYVETVFGRRLWLPEINGGNGPRRQAAERA 831 Query: 493 AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 A+ + GTA +L+K + R + ++Q+ +L Sbjct: 832 AINAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 873 >gi|238024946|ref|YP_002909178.1| DNA polymerase I [Burkholderia glumae BGR1] gi|237879611|gb|ACR31943.1| DNA polymerase I [Burkholderia glumae BGR1] Length = 917 Score = 260 bits (665), Expect = 5e-67, Method: Composition-based stats. Identities = 106/583 (18%), Positives = 195/583 (33%), Gaps = 101/583 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E A A+ D P +L + + + L + Sbjct: 343 SFDTETTSLDPMVAQIVGLSLCTEPGSAAYVPVAHRGPDAPEQLP----RDEVLAKLKPW 398 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALN-F 118 L + V + ++ + DI T + + + LAL Sbjct: 399 LENPARKKVGQHLKYDAQVLANY---DIALNGVEHDTLLESYVLESHRTHDMDSLALRHL 455 Query: 119 SEHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K E+ G +A + + D T H + VE Sbjct: 456 GVKTIKYEDVAGKGAQQIGFDEVALDVAAAYAAEDADITLQLHRVMYPQ--------VER 507 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L + ++ E + + + + G ID + IA +L+ + L Sbjct: 508 EAGLKRV---YTEIELPVSFVLRKMERTGVLIDSGRLEAQSREIAVRLVELEREAYALAG 564 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + + F + +V + S + +LA+D L +L + Sbjct: 565 GEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHRGL 622 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L +++ GR+ + TGR + QN+P + Sbjct: 623 SKLKSTYTDKLPRMINASTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT--------- 672 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA+ G K+V AD + IE R++A I+G++ ++AF+ Sbjct: 673 ---------------AEGRRIREAFIAAPGCKIVSADYSQIELRIMAHISGDESLLRAFS 717 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 GEDI+ T A+ F +VS +QR I KV+ L Y A L + Sbjct: 718 QGEDIHRATAAEVFGVTPLEVSTDQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYI 777 Query: 460 QQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKL 498 ++ + + + +A + LW+ + A+ + Sbjct: 778 DRYFARYPGVANYMETTRASAKAQGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPM 837 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV 531 GTA +L+K + A + + ++Q+ +L Sbjct: 838 QGTAADLIKLSMIAVDGWLERDGLRSRMIMQVHDELVLEVPDA 880 >gi|304383743|ref|ZP_07366202.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] gi|304335267|gb|EFM01538.1| DNA-directed DNA polymerase I [Prevotella marshii DSM 16973] Length = 920 Score = 260 bits (664), Expect = 6e-67, Method: Composition-based stats. Identities = 100/593 (16%), Positives = 191/593 (32%), Gaps = 112/593 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPSD 56 + ID ET S YA A + ++A ++ PV DR E + + Sbjct: 348 QTVSIDTETTS----------LYAMDAELVGLSFAVEERQAFYVPVPA-DRKEAEKIVNI 396 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 E +M V N ++ + + G+ + + +++A P ++ Sbjct: 397 FKPLYESEAIMKVGQNMKYDLEVLRNY-GVCLRGA--LFDTMIAHYLIQPELRHNMDYMA 453 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + ++ LI KG + + A EY D + T +L Sbjct: 454 EV-YLNYQTIHID---TLIG--AKGKHQKSMRELSPA-------QVYEYAAEDADITLQL 500 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P E L + + G RID + + +++ + L+ Sbjct: 501 KNVLEPKLREVEAEELFYQIEMPLVPVLAEMEMNGVRIDTQSLKETSDILTRRMHDLEAR 560 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I +L G + + LF I T + + S + QL + Sbjct: 561 IYELAGGEFNIA-SPKQVGDMLFGRMKIIDKPKKTKTGQYVTSEEVLQQLRGKHEIVGDI 619 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L + +++ GR+ + + TGR S QN+P Sbjct: 620 LDYRGLKKLLGTYVDALPKLINTRTGRIHTSFN-QTVTATGRLSSSEPNLQNIP------ 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 G +R I G AD + IE RV+A ++G+ Sbjct: 673 ------------------VRGEDGKEIRKAFIPEEGCLFFSADYSQIELRVMAHLSGDAH 714 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+AF G DI+ T AK + ++ V++++R K + Y G A+ + Sbjct: 715 MIEAFREGYDIHAATAAKIYGRAVEDVTRDERTKAKRANFGIIYGITVFGLAERLDIDRN 774 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 + + + + SH+ ++ Sbjct: 775 EAKQLIDGYFMMFPQVKDYMEHSKEVARTHGYVETIFHRRRYLPDINSHNATVRGFAERN 834 Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 A+ + G+A +++K A + + +LQ+ +L +E Sbjct: 835 AINAPIQGSAADIIKVAMIRIYRRFMKEGIRSKMILQVHDELNFSVFPEEKER 887 >gi|296159650|ref|ZP_06842473.1| DNA polymerase I [Burkholderia sp. Ch1-1] gi|295890094|gb|EFG69889.1| DNA polymerase I [Burkholderia sp. Ch1-1] Length = 913 Score = 260 bits (664), Expect = 7e-67, Method: Composition-based stats. Identities = 108/575 (18%), Positives = 195/575 (33%), Gaps = 99/575 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E +A A+ D PV+L + + + L + Sbjct: 339 SFDTETTSLDPMIAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLARLKPW 394 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + GI++ T + + + LAL Sbjct: 395 LESVEHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSLALRHLG 452 Query: 120 EHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 K EE G +A + D T H + V A Sbjct: 453 VKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQVLYPQ--------VAAE 504 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + L D E + + + G ID + + + IA +L+ + L G Sbjct: 505 KTLQ---YVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAGG 561 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + F + +V + S + +LA+D L ++ + Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDFPLPKILLEHRGLS 619 Query: 291 KL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L V++ GR+ + TGR + QN+P + Sbjct: 620 KLKSTYTDKLPRMVNATTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 668 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G KLV AD + IE R++A I+G++ +++F+ Sbjct: 669 --------------GEGRRIREAFIAPPGHKLVSADYSQIELRIMAHISGDESLLRSFSQ 714 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GEDI+ T A+ F+ +VS +QR + KV+ L Y A L + Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774 Query: 461 QFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLI 499 ++ + + D + + LW+ + A+ + Sbjct: 775 RYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524 GTA +L+K + A + ++Q+ +L Sbjct: 835 GTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDEL 869 >gi|91777303|ref|YP_552511.1| DNA polymerase I [Burkholderia xenovorans LB400] gi|91689963|gb|ABE33161.1| DNA polymerase A [Burkholderia xenovorans LB400] Length = 913 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 108/575 (18%), Positives = 194/575 (33%), Gaps = 99/575 (17%) Query: 5 FIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S P+ VG+ E +A A+ D PV+L + + + L + Sbjct: 339 SFDTETTSLDPMIAQIVGLSLSVEAGRAAYVPLAHRGPDAPVQLP----RDEVLARLKPW 394 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FS 119 L V + ++ + GI++ T + + + LAL Sbjct: 395 LESAGHKKVGQHLKYDEQVLANY-GIEMRGIE-HDTLLQSYVVESHRTHDMDSLALRHLG 452 Query: 120 EHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 K EE G +A + D T H + V A Sbjct: 453 VKTIKYEEVAGKGAGQIGFDEVALDKAAEYAAEDADITLRLHQVLYPQ--------VAAE 504 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + L D E + + + G ID + + + IA +L+ + L G Sbjct: 505 KTLQ---YVYHDIELPTSRVLRKMERTGVLIDSEKLRQQSSEIATRLIQLESEAYVLAGG 561 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + F + +V + S + +LA+D L ++ + Sbjct: 562 EF-NLGSPKQIGQIFFEKLELPVVKKTPSGAPST-DEEVLQKLAEDFPLPKILLEHRGLS 619 Query: 291 KL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L V++ GR+ + TGR + QN+P + Sbjct: 620 KLKSTYTDKLPRMVNATTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 668 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G KLV AD + IE R++A I+G++ + +F+ Sbjct: 669 --------------GEGRRIREAFIAPAGHKLVSADYSQIELRIMAHISGDESLLHSFSQ 714 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GEDI+ T A+ F+ +VS +QR + KV+ L Y A L + Sbjct: 715 GEDIHRATAAEIFSVTPLEVSNDQRRVAKVINFGLIYGMSSFGLASNLGITRDAAKLYID 774 Query: 461 QFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLI 499 ++ + + D + + LW+ + A+ + Sbjct: 775 RYFARYPGVARYMDETRVSAKAKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPMQ 834 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524 GTA +L+K + A + ++Q+ +L Sbjct: 835 GTAADLIKLSMIAVQKWIEESKIGTRMIMQVHDEL 869 >gi|294789122|ref|ZP_06754361.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] gi|294482863|gb|EFG30551.1| DNA polymerase I [Simonsiella muelleri ATCC 29453] Length = 926 Score = 260 bits (663), Expect = 7e-67, Method: Composition-based stats. Identities = 104/576 (18%), Positives = 188/576 (32%), Gaps = 100/576 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 ++ +D ET S P+ V A AV A+ W S P Sbjct: 352 RQIGLDTETNSLDPMTAKLVGISMAFAAGDAVYIPVAHTL--AEQLDWQEISGSLKP--- 406 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 +L D+ + + N +++ +FK GID+ + + S LA+ Sbjct: 407 --FLEDKNLAKIGQNLKYDQHIFKNH-GIDLQGIA-GDAMLASYIVESHLSHNLDDLAMR 462 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + T E C + EY +D + + + L Sbjct: 463 WLGLETISYES------LCGKGAKQISFADVNV------AQATEYACQDADFALRIEQHL 510 Query: 178 IP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + E + + + G +D + + + E +L++ L Sbjct: 511 RTQMDAQQIEIYENMELPVAQVLFQMERAGVHLDCAELAQQSTELGTELLQLEQQAYDLA 570 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGS 287 + L+ LF GI + + S + +LA D L +L Sbjct: 571 GQPF-NLNSPKQLQEILFNQLGIPTKGVKKTAKGGYSTDESVLEKLADDYPLPKLILQNR 629 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL + L E ++ GR+ + TGR + QN+P + + Sbjct: 630 SLAKLKSTYTDKLPEMINPQTGRVHTNYA-QAVAITGRLASNNPNLQNIPIRTK------ 682 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 VR A +G +V AD + IE R++A ++G+ A Sbjct: 683 ------------------QGRRVRRAFNAPDGYLIVSADYSQIELRIMAHLSGDATLQAA 724 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F N ED++ T A+ F +K++ EQR K + L Y G AK + Sbjct: 725 FQNNEDVHRRTAAEVFGVAPEKITLEQRRYAKTINFGLIYGMGEYGLAKSLGIDNVSAAM 784 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++++ + + S+H + A+ Sbjct: 785 FIKRYFARYTGVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGAERAAINA 844 Query: 497 KLIGTACELVKKA--------WRAKHQGVLQLWKDL 524 + GTA +L+KKA K + V+Q+ +L Sbjct: 845 PMQGTASDLIKKAMIDVSKFLMNQKSRLVMQVHDEL 880 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 14/130 (10%) Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 VA + ++ + R+L D+ + + R Sbjct: 795 GVAEYMQRTKEHAQQFGFVETLFGRKLYLPDIHSNHAMKRAGA---ERAAINAP------ 845 Query: 602 VQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNPS 656 +Q + D++ + M + +K +V+ VHDE+V E ++ + L +M++ + Sbjct: 846 MQGTASDLIKKAMIDVSKFLMNQKSRLVMQVHDELVLEVHESELDWIQIKLPEIMSQVGA 905 Query: 657 WAKGLPLKAE 666 +PL AE Sbjct: 906 EVLNVPLLAE 915 >gi|15644367|ref|NP_229419.1| DNA-directed DNA polymerase I [Thermotoga maritima MSB8] gi|4982191|gb|AAD36686.1|AE001805_11 DNA-directed DNA polymerase I [Thermotoga maritima MSB8] Length = 893 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 99/579 (17%), Positives = 188/579 (32%), Gaps = 106/579 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57 ID+ET S P I + ++ + ++ + L Sbjct: 321 AIDLETSSLDPF----------DCDIVGISVSFKPKEAYYIPLHHRNAQNLDEKEVLKKL 370 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L D V N F+ + + + +++A P+ K L Sbjct: 371 KEILEDPGAKIVGQNLKFDYKVL---MVKGVEPVPPYFDTMIAAYLLEPNEKKFNLDDLA 427 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 KM + L+ F D + Y D + T L+K L Sbjct: 428 LKFLGYKMTSYQELM-SFSFPLFGFSFADV-------PVEKAANYSCEDADITYRLYKTL 479 Query: 178 -IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + L + E L + + G +D + + KL E ++ ++L E+I ++ Sbjct: 480 SLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEEIYRI 539 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF GI + T + +LA + + L Sbjct: 540 AGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHEIIPLILEYR 598 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 I KL + L + V+ GR+ + G + TGR S QNLP Sbjct: 599 KIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP---------- 647 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I+ +V AD + IE R+LA ++G++ ++ Sbjct: 648 --------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAHLSGDENLLR 693 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHCG 456 AF G D++ T ++ FN ++V++E R GK++ ++ Y G Sbjct: 694 AFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVRLGVPVKEAE 753 Query: 457 LDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVK 495 + + + D Q + Q + A+ Sbjct: 754 KMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRKRDIPQLMARDRNTQAEGERIAIN 813 Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + GTA +++K A + + + ++Q+ +L Sbjct: 814 TPIQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDEL 852 Score = 40.5 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K +++ VHDE+V E P+ ++ L Sbjct: 816 IQGTAADIIKLAMIEIDRELKERKMRSKMIIQVHDELVFEVPNEEKDALVELVK 869 >gi|323144953|ref|ZP_08079513.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] gi|322415232|gb|EFY06006.1| DNA-directed DNA polymerase [Succinatimonas hippei YIT 12066] Length = 940 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 109/601 (18%), Positives = 192/601 (31%), Gaps = 106/601 (17%) Query: 7 DIETRS--PQPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S P+ VGV E+ A+A+ PV+ + + L Sbjct: 361 DTETTSLHPEDCTLVGVSFSVEEKEAFYLPLAHAYLGAPVQ---LAKDDVF-AKLAPVFA 416 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D + + HN F+ ++ G+ + T ++A S LA + + Sbjct: 417 DPKIKKIGHNVKFDLLVL-YFAGLSAVKGVYADTMLMAHLLDSVQSCALDNLAEKYLSYK 475 Query: 123 T-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 T K + ++ + D+ P D Y D E LF L+P Sbjct: 476 TIKYSDVAGSGSK--SVTFDNVPVDIA-----------CAYSGEDSEVALRLFNVLLPKI 522 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L + E + + G + D + + E++ E + + +DI Sbjct: 523 KDEGKANDILFNLEMPCLSVLFDMERVGALVSADELYRQTEVLKSELQAVQKDIYAAAGQ 582 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF I + G + + +T++A + L Sbjct: 583 EFNIA-SPKQLGNVLFESLAIPYPKKVKVDKNGNKQYSTAEDVLTEIAPMYDIANLVLRF 641 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ KL L +S GR+ + G + TGR S QN+P + Sbjct: 642 RSVSKLIGTYTEKLPLLISKRTGRIHTSFNQAGTT-TGRLSSSDPNLQNIPART------ 694 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA G LV AD + IE R++A IA + IK Sbjct: 695 ------------------HEGKLIRKAFIAPQGYTLVSADYSQIELRLIAHIAKDPNLIK 736 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCG 456 AF G DI+ T A+ I++V+ E+R+ K L Y GA Sbjct: 737 AFKLGYDIHKATAAEVLGKDINEVTGEERSRAKATNFGLMYGMGAHGLSAQTGLSFKAAK 796 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVK 495 + + + D + +H + A+ Sbjct: 797 AYIDCYFTRYPKIRDYMDSIKKFAHEHGYVETILGRRIDFPGINSTNRIAVTGAERAAIN 856 Query: 496 DKLIGTACELVKKAWRA-----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + G+A +++K A A + +LQ+ +L + + + + Sbjct: 857 APMQGSAADIIKIAMIAIEKWITSLPADTVRMILQVHDELVFEVKNEFLDEATAKIKELM 916 Query: 545 N 545 Sbjct: 917 E 917 >gi|320352875|ref|YP_004194214.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] gi|320121377|gb|ADW16923.1| DNA polymerase I [Desulfobulbus propionicus DSM 2032] Length = 894 Score = 260 bits (663), Expect = 8e-67, Method: Composition-based stats. Identities = 100/573 (17%), Positives = 182/573 (31%), Gaps = 111/573 (19%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S PL VGV E C + + L+++ Sbjct: 316 AVDTETDSLDPLKARLVGVSLCTEDGEAWYLPCGHRDEAGE-----LVAGQLPLDRLIEF 370 Query: 61 LR----DETVMCVAHNSLFERILFKK--TLGIDIPSKRWICTSVLARTNGLPSS---LKN 111 LR + HN F+ + GI + T + A L + Sbjct: 371 LRPVLEHPGTTKIGHNLKFDLAVLSAPCNGGIQLACPL-HDTMIGAWLLAPDRRTYKLDD 429 Query: 112 ACLALNFS----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 C +N E +T ++ + FC+ + + Y DV Sbjct: 430 LCGEINLRMTSYEEVTHADKSEDA---FCRVPL----------------EAAKNYSCEDV 470 Query: 168 EATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 L++ +P L + E L + + G R+D D + +L + Sbjct: 471 YGALRLYQEQLPQLERADLLALLREVEGPLVPVLAAMEREGIRVDADKLARLSAEFDRRL 530 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 + + I + + L LF + ++ + L+ D Sbjct: 531 RTDELSIYQAAGMSF-NINSPKQLGEVLFEKLQLPKGRKTK--TGWSTDVKVLENLSFDH 587 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L L + KL + L+ + GR+ + G + TGR S QN+P Sbjct: 588 ELPALILQYRNLAKLKSTYVDKLASLRNPRTGRVHTSFNQCG-TATGRLSSSSPNLQNIP 646 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +RS IA++G L+ AD + I+ RVLA Sbjct: 647 IRT------------------------EEGRRIRSAFIAADGCLLLAADYSQIDLRVLAH 682 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 + + I AF G+DI+ T A+ FN + V+ E R + K + + Y + Sbjct: 683 YSQDRELIAAFQGGQDIHRRTAAEIFNVSPELVTAEMRRVAKTINFGIVYGMSSFGLSSQ 742 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486 L + ++ + F ++ + + Sbjct: 743 LHVSRKDAQLFIDRYFAHFSGIKDFMASTIQQAKKDGFVTTLLGRRRPLAEINSANRVQR 802 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A+ + GTA +++K A H+ +L+ Sbjct: 803 EFAERTAINTPIQGTAADIIKLAMLRIHRELLR 835 >gi|189501769|ref|YP_001957486.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] gi|189497210|gb|ACE05757.1| hypothetical protein Aasi_0323 [Candidatus Amoebophilus asiaticus 5a2] Length = 936 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 100/575 (17%), Positives = 193/575 (33%), Gaps = 107/575 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQYLR 62 D ET S P Y QA + ++A+ + A+ + L Sbjct: 367 DTETTSLDP--------Y--QAQLVGISFAYYPGEAYYVPIPAERKAAQAIIEEFRPLLE 416 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 T V N ++ ++ +T GI++ T V +A ++ + Sbjct: 417 STTQCKVGQNLKYDNLIL-RTYGIEVAPP-IFDTMVAHYLVAPDKPHNMNAIAESYLNYA 474 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS- 181 E + + S+ +L EY D + T +L KRL+ L+ Sbjct: 475 PIPIEALIGSRKSTQKSMRMVDV-----------ELVKEYACEDADITLQL-KRLLELNI 522 Query: 182 ----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E L + + +G +ID ++ ++ + E L+++I +L Sbjct: 523 KQENLSKLFYEIEIPLVQVLTAMEYQGVQIDTQVLREISVTLGTELAALEKEIHRLAGHA 582 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSG 286 + L LF I + + + + L KD IL+ Sbjct: 583 F-NISSPKQLGEILFDKLKIAGNNKKTKSGQYATGELVLADLTKDHPIAANILDYRELQK 641 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + +S DG++ + + TGR S QN+P + Sbjct: 642 LKSTYVDALIDLISPFDGKVHTSYNQTVVT-TGRLSSTNPNLQNIPIRTEK--------- 691 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S L+ AD + IE R++A + ++ I+AF Sbjct: 692 ---------------GRAIRKAFVPSKPDHVLLSADYSQIELRIMASFSQDEHMIEAFKA 736 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G+DI+ T +K F P+++V + R K + Y G A+ S +Q Sbjct: 737 GKDIHTATASKLFKVPLEQVDESMRRQAKTANFGIIYGISGFGLAQRLGISRSEAIATIQ 796 Query: 461 QFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLI 499 + Q + + D ++ ++ A+ + Sbjct: 797 AYFQEFHAIKAYMDRVIGQAREQGYVTTLMGRKRYLRDINSRNSTLRGFDERNAINTPIQ 856 Query: 500 GTACELVKKAW----------RAKHQGVLQLWKDL 524 GTA E++K A + + + +LQ+ +L Sbjct: 857 GTAAEMIKLAMVHIYEWLQKEKLQSKLILQVHDEL 891 >gi|329960630|ref|ZP_08298973.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] gi|328532503|gb|EGF59297.1| DNA-directed DNA polymerase [Bacteroides fluxus YIT 12057] Length = 953 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 96/590 (16%), Positives = 189/590 (32%), Gaps = 112/590 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQS-AMPSDL 57 L ID ET +P+ AE L ++ D V + E++ + ++L Sbjct: 383 LSIDTETTGTEPME-------AE-----LVGMSFSDAENKGYYVPVPPNREEALKIINEL 430 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + G+ + + ++LA P + Sbjct: 431 RPLYENEKSLKVGQNIKYDMIVLQNY-GVQVRGA--LFDTMLAHYVLQPELRHNMDYLAE 487 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E + K D P D Y D + T +L Sbjct: 488 IYLHYQTIHIDELIGAKGKNQKNMRDLPAEDV------------YRYACEDADITLKLKN 535 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L + E L + I G R+D + + + E ++++++I Sbjct: 536 VLEKELKEQGAEHLFYEIEMPLVPVLVNIETNGMRLDTEALKQSSEHFTVRLQEIEKNIY 595 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + L + Sbjct: 596 ELAGETF-NIGSPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLESLRGKHAVIGKILE 654 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++S GR+ + + TGR S QN+P + Sbjct: 655 YRGLKKLLSTYIDALPQLINSRTGRIHTSFN-QAVTSTGRLSSSNPNLQNIPIR------ 707 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I +G + AD + IE R++A ++ + I Sbjct: 708 ------------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDKNMI 749 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF +G DI+ T AK + I++V+ + R K + Y G A+ Sbjct: 750 DAFLSGHDIHAATAAKIYKIDIEEVTSDMRRKAKTANFGIIYGISVFGLAERLNVSRQEA 809 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 810 KELIDGYFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 869 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A +Q +LQ+ +L +E Sbjct: 870 NAPIQGSAADIIKVAMAHIYQRITSNKLKAKMILQVHDELNFSVPASEKE 919 >gi|313205711|ref|YP_004044888.1| DNA polymerase i [Riemerella anatipestifer DSM 15868] gi|312445027|gb|ADQ81382.1| DNA polymerase I [Riemerella anatipestifer DSM 15868] gi|315022894|gb|EFT35918.1| DNA polymerase I [Riemerella anatipestifer RA-YM] gi|325336847|gb|ADZ13121.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Riemerella anatipestifer RA-GD] Length = 935 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 96/554 (17%), Positives = 182/554 (32%), Gaps = 90/554 (16%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E A+ + E+++ +AHN ++ + GI++ + T + Sbjct: 403 AEAQAIVERFRPFFEKESILKIAHNLKYDYKVLLNY-GIEVTGNLF-DTMIAHYLLNPDG 460 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L+ + + E LI + KG D +Y D Sbjct: 461 RHGMDYLSEMYLNYKPIALE--TLIGKKGKGQKTLREIDLPTQT---------QYAAEDA 509 Query: 168 EATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T +L++ P E L + + G +D + + + Q+ Sbjct: 510 DITFQLYEIFSPQLKKEEVEEVFYKIEMPLVKVLAKMELTGVALDEEWLKDESISLEQDL 569 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 K L+ I + + L LF +D T + S + +L+ Sbjct: 570 KILEGQIFEQAGEEF-NINSPKQLGDILFEKLKLDPKAKKTKTGQYSTSEDVLQKLSHKH 628 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + +L + KL + L +S DGR+ + A+ TGR + QN+P Sbjct: 629 EIIKLILEYRQLQKLKSTYVDALPNQISPIDGRVHTSFAQTVAA-TGRLASNNPNLQNIP 687 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + VR +A G K+V AD + IE R++A Sbjct: 688 IRTER------------------------GQQVRGAFVAPKGSKIVSADYSQIELRLIAE 723 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF--- 448 I+GE+ IKAF G+DI+ +T +K F+ P+++VSK QR+ K + + Y A Sbjct: 724 ISGEETMIKAFKEGQDIHASTASKLFDVPLNEVSKTQRSQAKTVNFGIIYGQSAFALADQ 783 Query: 449 -KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486 + + + + F + + + ++ Sbjct: 784 TGLSRTDAKQLIDSYYETYPKLKAFMTEQVQVARKKGYVETIMGRKRHLKDINSNNFVVR 843 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGG 536 AV + G+A +++K A + LQ+ +L E Sbjct: 844 GHAERNAVNAPIQGSAADIIKLAMIKIDSEIKAQGLKTKMLLQVHDELVFEVPNEEIEVA 903 Query: 537 SISARRVANVPRLV 550 + ++ Sbjct: 904 TTLIKQEMETAYST 917 >gi|310687606|dbj|BAJ23222.1| DNA dependent DNA polymerase [Thermotoga petrophila] Length = 893 Score = 259 bits (661), Expect = 1e-66, Method: Composition-based stats. Identities = 94/528 (17%), Positives = 176/528 (33%), Gaps = 89/528 (16%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 ++ + L + L D V N F+ + + + +++A P+ Sbjct: 362 DEKEVLKKLKEILEDPGAKIVGQNLKFDYKVL---MVKGVEPVPPHFDTMIAAYLIEPNE 418 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 K L KM + L+ F D + Y D + Sbjct: 419 KKFNLDDLALKFLGYKMTSYQELM-SFSSPLFGFSFADV-------PVEKAANYSCEDAD 470 Query: 169 ATRELFKRL-IPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T L+K L + L + E L + + G +D + + KL E ++ + Sbjct: 471 ITYRLYKTLSLKLHEADLENVFYKIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLE 530 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L E+I ++ + + LF GI + T + +LA + Sbjct: 531 ELAEEIYRIAGEPF-NINSPKQVSRILFEKLGIKPRGKTTKTGDYSTRIEVLEELAGEHE 589 Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + L I KL + L + V+ GR+ + G + TGR S QNLP Sbjct: 590 IIPLILEYRKIQKLKSTYIDALPKMVNPKTGRIHASFNQTG-TATGRLSSSDPNLQNLP- 647 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAW 391 +R I+ +V AD + IE R+LA Sbjct: 648 -----------------------TKSEEGKEIRKAIVPQDPNWWIVSADYSQIELRILAH 684 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-V 447 ++G++ +KAF G D++ T ++ FN ++V++E R GK++ ++ Y G Sbjct: 685 LSGDENLLKAFEEGIDVHTLTASRIFNVKPEEVTEEMRRAGKMVNFSIIYGVTPYGLSVR 744 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQ 486 + + + D Q + Q Sbjct: 745 LGVPVKEAEKMIVNYFVLYPKVRDYIQRVVSEAKEKGYVRTLFGRRRDIPQLMARDRNTQ 804 Query: 487 DQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + A+ + GTA +++K A + K + ++Q+ +L Sbjct: 805 AEGERIAINTPIQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDEL 852 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K +++ VHDE+V E PD ++ L Sbjct: 816 IQGTAADIIKLAMIEIDRELKESKMKTKMIIQVHDELVFEVPDEEKDALVELVK 869 >gi|255010273|ref|ZP_05282399.1| putative DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 964 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 92/584 (15%), Positives = 181/584 (30%), Gaps = 100/584 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59 L +D ET P+ A + +++ + + + + Sbjct: 394 LALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFES 443 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 +++ + V N ++ ++ + GI+I + + T V LA + Sbjct: 444 VFKNDKSLKVGQNIKYDMLVLQNY-GIEIRGRLF-DTMVAHYVLQPELRHNMDYLAEIYL 501 Query: 120 EHLTKMEE------GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVEATR 171 + T E GK D Y C A+ + L E K D E Sbjct: 502 HYQTIHIEELIGPRGKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAE--- 558 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L + E L + I G R+D + + + E + ++++I L Sbjct: 559 ----KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEE 612 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + LF I T + + S + L + + K Sbjct: 613 FNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYRGLKK 671 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + ++ GR+ + + TGR S QN+P + Sbjct: 672 LLSTYIDALPQLINPRTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR------------ 718 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I +G AD + IE R++A ++ + I AF +G Sbjct: 719 ------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSG 766 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T AK + I +V+ + R K + Y G A+ + Sbjct: 767 YDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDG 826 Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500 + + + D S + ++ A+ + G Sbjct: 827 YFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQG 886 Query: 501 TACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 +A +++K A ++ +LQ+ +L +E Sbjct: 887 SAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKE 930 >gi|115526809|ref|YP_783720.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] gi|115520756|gb|ABJ08740.1| DNA polymerase I [Rhodopseudomonas palustris BisA53] Length = 1012 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 90/493 (18%), Positives = 169/493 (34%), Gaps = 73/493 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LK 110 L L V+ + N F +L + G+ + + + A G + L Sbjct: 484 EALRPLLESPGVLKIGFNIKFTAVLLAQH-GLTLQNHDDVQLMSYALDAGRHAHGLDALA 542 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRDVE 168 L + + GKA + F + +ID ++ W++ E Sbjct: 543 ENWLGHKALSYGEVIGSGKAKLG-FDQVAIDRATCYAAEDADVALRLWRILKPRLT--AE 599 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 +++ L ER L + + RG ID ++ +L AQ +++ +I ++ Sbjct: 600 RMMTVYETL------ERPLIGVLARMERRGISIDRQVLARLSSDFAQTAARIEAEIREIA 653 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGS 287 + + L LF G+ ++ T S S + +LA++ R Sbjct: 654 GEEL-NIGSPKQLGDVLFGKMGLPGGKKTK-TGAWSTSASILDELAEEGHQFPRKILDWR 711 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L V T A+ TGR S QN+P + Sbjct: 712 QVSKLRSTYTDALPTYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------ 765 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R IA+ G KLV AD + IE R+L+ +A AF Sbjct: 766 ------------------GRKIRRAFIAAPGHKLVSADYSQIELRLLSEVAEVPALRTAF 807 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 +G DI+ T ++ F P+ + E R K + + Y G A G Sbjct: 808 QDGIDIHAMTASEMFGVPVKDMPGEVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAY 867 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++++ + + D + ++ + ++ A+ + Sbjct: 868 IKKYFERFPGIRDYMDATKEFCRAHGYVETLFGRKCHYPDIKASNPSIRAFNERAAINAR 927 Query: 498 LIGTACELVKKAW 510 L GTA +++++A Sbjct: 928 LQGTAADIIRRAM 940 >gi|294339888|emb|CAZ88251.1| DNA polymerase I (POL I) [Thiomonas sp. 3As] Length = 922 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 104/559 (18%), Positives = 194/559 (34%), Gaps = 88/559 (15%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID ET S P L + + +A A+A+ P +L + + L + Sbjct: 349 AIDTETDSLDPMRARLIGISLSVTPGEAAYLPLAHAYPGAPEQLP----MAEVLERLRPW 404 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + + N+ ++R +F G+ I T + + L S Sbjct: 405 LENADKPKLGQNAKYDRHVFANA-GVTIRGYA-HDTLLESYVIEAHKPHSLDSLV---SR 459 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 HL + + + C + +D A + Y D + T ++ +RL P Sbjct: 460 HLGRDDTLSYE--QVCGKGAKAITFD------QVALDVATRYSGEDADLTLQVHQRLWPQ 511 Query: 181 SDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E + + Q I G +D DL+ + + + L+ +L G Sbjct: 512 IQADAGLTRIYALEMQVSEVLQRIERTGVLVDGDLLRAQSGELGAKMQTLEAQAFELAGG 571 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + LF + + + S + +LA+D L R+ ++ Sbjct: 572 AF-NLGSPKQIGEILFDRLQLPVQKKTASGAPST-DEEVLEKLAEDYPLPRVILDHRSLS 629 Query: 291 KLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ D GR+ + TGR + QN+P + Sbjct: 630 KLKSTYTEKLPQMINPDTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT---------- 678 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R +A G + +D + IE R++A ++ + + AFA Sbjct: 679 --------------AEGRRIREAFVAPKGWLIASSDYSQIELRIMAHLSQDAGLLAAFAA 724 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 GEDI+ T A+ F +VS +QR + KV+ L Y A+ S L + Sbjct: 725 GEDIHRATAAEIFGVTSLEVSSDQRRMAKVINFGLIYGMSAFGLARNLGLERSAAQLYID 784 Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPE---------FAVKDKLIG 500 ++ + + + E LW+ D + A+ + G Sbjct: 785 RYFARYPGVAAYMERTRKLAAEQGYVETVFGRRLWLPDIHASGPRRAAAERAAINAPMQG 844 Query: 501 TACELVKKAWRAKHQGVLQ 519 TA +L+K A A +++ Sbjct: 845 TAADLIKMAMIAVDAALVR 863 >gi|118340598|gb|ABK80648.1| putative DNA polymerase I [uncultured marine Nitrospinaceae bacterium] Length = 894 Score = 258 bits (660), Expect = 2e-66, Method: Composition-based stats. Identities = 112/580 (19%), Positives = 208/580 (35%), Gaps = 111/580 (19%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D+ET S P+ VG+ E A A+ + P + + + L Sbjct: 322 ALDLETTSLNPVQAHVVGISLSCEAGVACYIPLAHRYFGVPEQ----LDLDLVLKKLKPL 377 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL----KNACLAL 116 L D + V N ++ I+ K + G+++ + T + + A L Sbjct: 378 LEDPKLKKVGQNIKYDLIVLK-SEGVNLVGVAF-DTMLASYILNPSGRRHNMNDMARDYL 435 Query: 117 NFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 ++ K G A F K I +L EY D + T L++ Sbjct: 436 GYTTTKYKEVVGTASKEIGFDKVDI----------------ELATEYAAEDADITWRLYE 479 Query: 176 RLIPLS---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L PL + E L + + G ++D + KL +LI Q+ + ++I Sbjct: 480 NLSPLLQGDDFKLLQELELPLIEVLAEMELHGMKLDKSHLQKLSQLIQQKLEDQQKEIYS 539 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + L + LF + ++ ++ S + QLA + L + + Sbjct: 540 LAGEEF-NINSPKQLSVILFEKLELPVIKKTKNG--YSTDVSVLEQLAAEHELPDVVLTY 596 Query: 287 SAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEI 339 ++KL + L E + ++ GR+ + A+ TGR S QN+P R E E Sbjct: 597 RQLVKLKSTYADALQEDIFNNTGRVHTSFNQTVAA-TGRLSSSNPNLQNIPIRTEMGRE- 654 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A L+ AD + +E RVLA ++ ++ + Sbjct: 655 ------------------------IRKAFVAEGNNHLLSADYSQVELRVLAHLSEDEALV 690 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF GEDI+ T + F T +++ E R + K + + Y G +K K Sbjct: 691 DAFQMGEDIHTRTACEIFGTTPERLDAEARRMAKAVNFGIVYGLSAFGLSKQLKIYPKDA 750 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + Q+ K + A++ + +++ A+ Sbjct: 751 KKFIDQYFALYKKVKVYMVETVAQAKEVGYTLTLMNRRRYLPDLKSQNRQVRESAERIAI 810 Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + G+A +L+K A + K + +LQ+ +L Sbjct: 811 NSPVQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHDEL 850 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV-----GTLCSL 650 VQ + D++ M K ++L VHDE+V E P+ + + + Sbjct: 814 VQGSAADLIKLAMIRLAEQIRTKKLKSRMILQVHDELVFECPEDEEQEMRALVTKEMEEV 873 Query: 651 M 651 M Sbjct: 874 M 874 >gi|301062352|ref|ZP_07203015.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] gi|300443556|gb|EFK07658.1| DNA-directed DNA polymerase [delta proteobacterium NaphS2] Length = 893 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 108/564 (19%), Positives = 187/564 (33%), Gaps = 94/564 (16%) Query: 4 LFIDIETRSPQPLP----------KVGVWAYAEQAVITLCAYAWDDEPVKL-WDRTEQSA 52 L ID ET P+ K G +A + + P ++ W Sbjct: 317 LAIDTETTGTDPMRADLVGVSFCLKEG------KAFYLPVGHHYLGVPAQVSWPDAR--- 367 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-LKN 111 L L D+ V+ V N ++ + K+ G+ + + T + + Sbjct: 368 --DVLKDVLEDDAVLKVGQNIKYDACVLKRH-GVSLSGISF-DTMIASYVINPGLRQHNL 423 Query: 112 ACLALNFSEHLT---KMEEGKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRD 166 LA + H K GK AR F + S++ Y C A+ + RD Sbjct: 424 DALAQRYLNHKMISYKDVVGKGKNARGFEEVSLEKACEYSCEDADMTFRLRRILAKQIRD 483 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E LF L E L + + G +ID L + A+E K++++ I Sbjct: 484 -EKNEALFNEL------EMKLLPVLLDMEMTGIKIDTALFETMSADFAEEMKQVEKKIQA 536 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF + + + T + + +LA+ + R Sbjct: 537 DAGMEF-NLNSPQQLGKVLFEVLKLPGGRKTAKTKRYSTDVKVLQKLAESHRIAREILRF 595 Query: 287 SAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ KL + L V+ + R+ + A+ TGR S QN+P + Sbjct: 596 RSLAKLKSTYLDALVRMVNPETKRVHTSFNQTVAA-TGRLSSSDPNLQNIPIR------- 647 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G A +R +A +GK LV AD + IE RV A + + + Sbjct: 648 -----------------GDAGKNIRKGFMAGSGKILVAADYSQIELRVFAHYSQDAAFMA 690 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCG 456 AF +DI+ T + +V+ E R I K + + Y G + Sbjct: 691 AFKENQDIHARTALEVLGKEKGEVTPEMRRIAKAINFGIIYGMGPQKLSEELSISKEAAQ 750 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVK 495 + + K F++ + ++ + AV Sbjct: 751 DYINAYYDRYKGVKRFKEKAIETALEKGYVTTLFNRRRYLPDISHNNNRIRSEAERMAVN 810 Query: 496 DKLIGTACELVKKAWRAKHQGVLQ 519 + GTA +L+KKA H + + Sbjct: 811 TPIQGTAADLIKKAMIEIHNRLTE 834 >gi|172062801|ref|YP_001810452.1| DNA polymerase I [Burkholderia ambifaria MC40-6] gi|171995318|gb|ACB66236.1| DNA polymerase I [Burkholderia ambifaria MC40-6] Length = 917 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 101/538 (18%), Positives = 176/538 (32%), Gaps = 104/538 (19%) Query: 46 DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D EQ + L + L V + ++ + GI++ T + + Sbjct: 381 DMPEQLPIDEVLARLKPWLESADRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYV 438 Query: 103 NGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQL 158 + LAL K E+ GK F + +++ Sbjct: 439 LESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD------ 492 Query: 159 FGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 T +L + L P D E + L+ + + G ID L+ Sbjct: 493 ----------ITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQ 542 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 IA +L+ +L G + + F + +V + S Sbjct: 543 AQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DE 600 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + +LA+D L +L + KL + L V+ GR+ + TGR + Sbjct: 601 EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLA 659 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R IAS G ++V AD Sbjct: 660 SNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSADY 695 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A I+G+ ++AFA GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 696 SQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 755 Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAE----------SHHLWM- 485 A L + ++ + ED A LW+ Sbjct: 756 GMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTRTAAKDKGYVETVFGRRLWLP 815 Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + A+ + GTA +L+K + R + ++Q+ +L Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDEL 873 >gi|262374328|ref|ZP_06067604.1| DNA polymerase I [Acinetobacter junii SH205] gi|262310886|gb|EEY91974.1| DNA polymerase I [Acinetobacter junii SH205] Length = 921 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 189/568 (33%), Gaps = 102/568 (17%) Query: 3 KLFIDIET----RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 ID ET L + A +A A+ ++ P +L + + + + Sbjct: 348 HFAIDTETTNLDYRVAELVGFSIAFDANEAYYVPLAHDYEGAPEQL----SREQVLAQIK 403 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLAL 116 L +E V + H+ ++ +F I + W ++LA N + +A Sbjct: 404 PILENEQVKKIGHHLKYDAHIFANH---GIIIQGWYFDTMLASYVLNAAATRHGMDDVAR 460 Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + HLT E GK + F + ++ + Y D T Sbjct: 461 VYLSHLTTTFEQIAGKGAKQKTFNQIELEVAAH----------------YAAEDAHVTYR 504 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L++ L L + E + + + + G ++D + +L + + L+ Sbjct: 505 LYEVLSSKLKSHPELVNILHNIEMPVARVLTGMEEDGIKLDHKFLDQLSVEFSDTMQTLE 564 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +L + + LF GI + T + S S + ++ L Sbjct: 565 NQATELAGETFNIA-SPKQVGEVLFDKLGIKGGKKT-ATGQYSTSESILEKIEHPLAEVI 622 Query: 282 LASSGSAILKLNTLSEAV-----SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L G A LK NT ++ + + R+ + + TGR S QN+P + Sbjct: 623 LEHRGLAKLK-NTYTDRLVEQSHDATHRVHTSY-HQALTATGRLSSTDPNLQNIPIRT-- 678 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G+ L+ AD + IE R++A + +D Sbjct: 679 ----------------------PIGRQIRKAFIAPEGRVLLAADYSQIELRLMAHFSQDD 716 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + AF G+D++ T A+ I+ V+ +QR K + L Y + Sbjct: 717 ALVHAFQQGQDVHRRTAAEVLGIAIEDVTNDQRRQAKAVNFGLLYGMSEFGLTRQLGFTR 776 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQYPE 491 + ++ Q + + + + ++ Sbjct: 777 EESRSYIARYFQRYPGVLDYMERTRQIAREQGFVETILGRRLYTPDILATNKMIKQAAER 836 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +++K A A + + + Sbjct: 837 AAINAPLQGSAADIIKLAMIAVDKILPK 864 >gi|81299005|ref|YP_399213.1| DNA polymerase I [Synechococcus elongatus PCC 7942] gi|81167886|gb|ABB56226.1| DNA polymerase I [Synechococcus elongatus PCC 7942] Length = 953 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 119/653 (18%), Positives = 208/653 (31%), Gaps = 144/653 (22%) Query: 36 AWDDEPVKL--WDRT--EQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGI 86 AW +EP +L E +P +L LR + N+ F+R++ + Sbjct: 390 AWGEEPDQLAYIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQ--- 446 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 I + ++LA P SL ++ AL + + D P Sbjct: 447 GIELAGVVFDTMLASYLLNP-SLGHSLDAL-----------ADRWLKLQTRSYSDLVPKG 494 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQTIN 195 T A A +YC DV + L L L E L + + Sbjct: 495 KTIAQVAIA--AVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEME 552 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 DRG RID + +L E + E +L+ L + L LF G+++ Sbjct: 553 DRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRF-NLGSPKQLSELLFEKLGLNVKK 611 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQ 310 + + + +L D + L + KL + L V++DGR+ Sbjct: 612 SRKTKTGYSTDAAVLEKLQGDHPIIDLILEHRTLAKLKSTYVDALPSLVAADGRIHTDFN 671 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P + S +R + Sbjct: 672 -QAVTATGRLSSSNPNLQNIPIRT------------------------EFSRQIRKAFLP 706 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G L AD + IE R+LA ++ E ++A+ G+D++ T + F+ ++++ E+R Sbjct: 707 REGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFD--REEITSEERR 764 Query: 431 IGKVMELALGYQGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 IGK++ + Y GA+ F + + +F T+ Sbjct: 765 IGKIINFGVIYGMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTY-------------- 810 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 L + + + + G + + Sbjct: 811 -----------LQSLERQAIARGYVETVLGRRRYFD------------------------ 835 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 L R + D + +QL+R +Q S Sbjct: 836 ----------FEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAP------IQGSS 879 Query: 607 RDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 DI+ M Y ++L VHDE+V E P + S+ + M + Sbjct: 880 ADIIKVAMVQLQALLQSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQA 932 >gi|300087225|ref|YP_003757747.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526958|gb|ADJ25426.1| DNA polymerase I [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 915 Score = 258 bits (659), Expect = 2e-66, Method: Composition-based stats. Identities = 92/555 (16%), Positives = 183/555 (32%), Gaps = 101/555 (18%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET L + + A + ++ + D +L +Y Sbjct: 345 ALDTETTGLDALSADLVGLSLAPAAGEGYYLPVGHSGVEGRQWTTD---------ELKRY 395 Query: 61 L----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L D + +AHN+ ++ + G + ++LA SSL LA Sbjct: 396 LGPVLADVGIGKIAHNAKYDLHILA---GAGLLVAGLDFDTMLAAHLLGESSLSLKGLA- 451 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 F+ +M ALI G T + +Y D + T L++ Sbjct: 452 -FNRLGIEMTPITALI-----GEGRHQKCIST-----CGLRETADYACADADMTLRLYQL 500 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L+P + E L + + G +D+ ++ + + ++ +++ I + Sbjct: 501 LLPELEKENQSRLFDEVEMPLVPVIMDMEAAGIAVDVTILSAMSARLGRQLTEIEAAIYE 560 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + L LF + + + + + L + + RL Sbjct: 561 QANRPFNIA-SPRQLGEVLFEELKLPVGRKTRSG--YRTDAAVLEGLKDEHEIVRLILEY 617 Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L VS+ DGRL + + TGR S QN+P Sbjct: 618 RTLAKLKSTYVDILPAMVSARDGRLHTSFN-QARTATGRLSSSDPNLQNIP--------- 667 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G +R +A G L+ AD + I+ R LA ++G+ I Sbjct: 668 ---------------VRGQYGREIRQAFVAPPGHFLLAADYSQIDLRALAHLSGDSALIA 712 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456 AF EDI+ T + P D+++ E R K + + Y + + Sbjct: 713 AFNAEEDIHTATAMSLYGLPRDEITPEMRRFAKTVNFGVIYGMSGYGLEQATEMSREEST 772 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 +Q + + + + + ++ + +++ A+ Sbjct: 773 RFIQTYFERYPGVRAYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVREAAERMAIN 832 Query: 496 DKLIGTACELVKKAW 510 + GT+ +++K A Sbjct: 833 MPVQGTSADIIKVAM 847 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 24/132 (18%), Positives = 46/132 (34%), Gaps = 9/132 (6%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERT 592 E + R + +++ +R Y + + G Y+ + + R Sbjct: 765 EMSREESTRFIQTYFERYPGVRAYLNLTKEQARSRGYVETILGRRRYIPDINAANRQVRE 824 Query: 593 YGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG 645 ++ N+ VQ S DI+ M + ++L VHDE++ E P + Sbjct: 825 AAERMAINMPVQGTSADIIKVAMLEVRREMDSQGLESRLLLQVHDELIFEVPQAELMFMS 884 Query: 646 TLCS-LMTKNPS 656 L S M+ Sbjct: 885 ELASRRMSAAVE 896 >gi|146329645|ref|YP_001209132.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] gi|146233115|gb|ABQ14093.1| DNA polymerase I [Dichelobacter nodosus VCS1703A] Length = 901 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 81/536 (15%), Positives = 179/536 (33%), Gaps = 76/536 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L + ++ + + F+R + + + + Sbjct: 376 LKNLFENASIRKIGQHLKFDRHILARYGISLNGVIDDTMLMSYCYNSTATRHNMDDLADF 435 Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSPP-YDCTRAN-HVQAWQLFGEYCKRDVEATR 171 ++ + E+ A RF + +++ Y C A+ +Q +Q F + + + Sbjct: 436 YLNKQTIRFEDIAGSGAKQRRFDEIDLETAMQYACEDADITLQLYQFFQQKLASE-PTLQ 494 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L++ + ER L + + +G +I D + + +A + K L + +L G+ Sbjct: 495 ALYE------NVERPLAEILWAMEHQGVKIAGDKLAVQSQELAAQLKTLQKQAYQLAGGV 548 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-------DLILNRLAS 284 + L+ LF + ++ + T ++ + + +LA+ ++ILN A Sbjct: 549 F-NLDSPKQLQEILFERLALPVIHKTP-TGQASTNEEVLQKLAELRQSALPEIILNYRAL 606 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L E + D + T + TGR S QN+P + Sbjct: 607 GKLKSTYTDKLPELIDPDSKRVHTSYHQAVTSTGRLSSSDPNLQNIPIRS---------- 656 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G ++ AD + IE R++A ++ ++ +AF Sbjct: 657 --------------DEGRRIRQAFIAEEGYSILAADYSQIELRIMAHLSQDERLQRAFQL 702 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 +DI+ T A+ F+ + V + QR K + L Y A+ + + Sbjct: 703 QQDIHTATAAELFSVAPEAVDRNQRRDAKAINFGLIYGMSAFGLARQLNISRTQAAEYID 762 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 ++ + D + ++ + A+ + Sbjct: 763 KYFHRYPQVLAYMDSARQTAQQQGYVSTLLGRRLYIPDIHNKNMQRRRAAERLAINAPMQ 822 Query: 500 GTACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEGG-SISARRVANVPRL 549 G+A +++K A Q +L + + V I R+ ++ Sbjct: 823 GSAADIIKLAMVQFWQTYGAQKECRLLMQVHDELVFEVATAALDIWQPRITHIMEH 878 >gi|288800530|ref|ZP_06405988.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] gi|288332743|gb|EFC71223.1| DNA polymerase type I [Prevotella sp. oral taxon 299 str. F0039] Length = 921 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 89/589 (15%), Positives = 189/589 (32%), Gaps = 106/589 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D ET S L +A + +++ + + ++ Sbjct: 349 RIVSLDTETTSLNAL----------EAELVGLSFSVSPQEAFYVPIPNEQQKAQKIVNAF 398 Query: 62 ----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116 +E + V N ++ + + I K + +++A P +A Sbjct: 399 QPLYENEEIEKVGQNIKYDIEVLRNY---GITMKGPLFDTMIAHYLLQPELRHNMDDMAE 455 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + K LI K ++ + +Y D + T +L Sbjct: 456 TYLRY--KTIHIDQLIGAKGKDQLNMRSLAP---------EQIVDYACEDADITLQLKNI 504 Query: 177 ---------LIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L PL + E L + + G ++D+ + ++ + ++ ++ I + Sbjct: 505 FEPKLKEAGLYPLFKEVEMPLIYVLAEMECNGVKLDVQALSEVSKTFNEQLSLYEQKIYE 564 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + + LF + T + + S + +L + Sbjct: 565 LAGETF-NISSPKQVGTILFEKLKVAEKPKKTKTGQYVTSEEELQKLINKHPIIDEILKY 623 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + V+ G + + + TGR S QN+P Sbjct: 624 RGLKKLLSTYVDALPKLVNPKTGNIHTSFN-QATTATGRLSSSDPNLQNIP--------- 673 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G +R C I + G AD + IE R++A ++G++ I+ Sbjct: 674 ---------------VRGEDGKEIRKCFIPNEGCLFFSADYSQIELRIMAHLSGDENMIE 718 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T AK + PID+V++++R K + Y G A+ + Sbjct: 719 AFIEGHDIHAATAAKIYKKPIDEVTRDERTKAKRANFGIIYGITVFGLAERLNIERNEAK 778 Query: 457 LDLQQFSQNVKSTSTFEDWE---------------------QAESHHLWMQDQYPEFAVK 495 ++ + + + S + ++ A+ Sbjct: 779 QLIEGYFSTFPQVQAYMEQCKETAKQNGYVETFMHRRRYLADINSQNATVRGYAERNAIN 838 Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 + G+A +++K A K + +LQ+ +L +E Sbjct: 839 APIQGSAADIIKLAMVRIYERFNNEGIKSKMILQVHDELNFSVLPNEKE 887 >gi|282880586|ref|ZP_06289293.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] gi|281305689|gb|EFA97742.1| DNA-directed DNA polymerase [Prevotella timonensis CRIS 5C-B1] Length = 920 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 93/591 (15%), Positives = 184/591 (31%), Gaps = 110/591 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW-DDEPVKLWDRTEQS---AMPSDL 57 L +D ET S A +A + +++ + + + + + Sbjct: 348 KILSLDTETTSTN----------AMEAELVGLSFSVAPHQAFYVPIPANREQTIKIVNLF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACL 114 +E ++ V N ++ + + GI++ + +++A P ++ Sbjct: 398 KPAYENEAILKVGQNIKYDMEVLSRY-GIELKGN--LFDTMIAHYLLQPELRHNMDYMAE 454 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +EE LI KG + EY D + T +L Sbjct: 455 V-YLRYQTVHIEE---LIGPRGKGQKNMRDLAPNDI---------YEYACEDADITLQLK 501 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L P E L + + G RID + ++ E + L+ I Sbjct: 502 NILEPKLKEREVDQLFYQMEMPLVRVLTQMEMNGVRIDTKALQEVSESFTKRMNDLEAQI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + + LF I T + + S + + A + L Sbjct: 562 HQLAGESF-NVSSPKQVGDILFEKLQIAEKPKKTKTGQFVTSEEELQKYATGNEIVTLIL 620 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + ++ G + + + TGR S QN+P Sbjct: 621 DYRGLKKLLGTYVDALPKLINPQTGHIHTSFN-QTVTATGRLSSSDPNLQNIP------- 672 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G +R C I +G AD + IE RV+A ++G+ Sbjct: 673 -----------------VRGEDGKEIRKCFIPEDGCLFFSADYSQIELRVMAHLSGDKHM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+AF G DI+ T AK + + V++++R K + Y G A+ Sbjct: 716 IEAFQEGYDIHAATAAKMYGKEMKDVTRDERTKAKRANFGIIYGITVFGLAERLGIDRGE 775 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + ++ + S + ++ A Sbjct: 776 AKQLIDGYFTTFPQVQSYMEQAKDMAREKGYVETFFHRRRYLPDINSQNATVRGFAERNA 835 Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534 + + G+A +++K A + + +LQ+ +L +E Sbjct: 836 INAPIQGSAADIIKVAMIRIYERFKRENIQSKMILQVHDELNFSVLPSEKE 886 >gi|298207105|ref|YP_003715284.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] gi|83849739|gb|EAP87607.1| DNA polymerase I [Croceibacter atlanticus HTCC2559] Length = 956 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 113/611 (18%), Positives = 201/611 (32%), Gaps = 104/611 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSA-MPSDLLQYLR 62 D ET PL A + A++WD + D E++ + +L + Sbjct: 389 DTETTGLNPLT----------AELVGIAFSWDAGKGFYLPFSDNKEEAQQLIEELRPFFE 438 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121 +E + V N ++ + K DI + + ++LA LA + + Sbjct: 439 NEDIQKVGQNLKYDIKVLHKY---DIEVRGPLFDTMLAHYLINPDMRHNMDVLAETYLNY 495 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 E LI + KG D + + Y D + T +L + Sbjct: 496 SPVSIE--TLIGK--KGKNQKSMRDVPLEDQTE-------YAVEDADITLQLKEHFEKEL 544 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + + G +D + L E + + L+ I K Sbjct: 545 GDANTQKLFDDIEIPLLRVLAAMELEGINLDKAFLNNLAEDLNNDIATLEASIYKEAGEE 604 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF + T + + ++ LA D + + + K Sbjct: 605 F-NIGSPKQLGEILFDKLKLVEKPKKTRTGQYSTAEDVLSYLAADHTIIQNVLDYRGLAK 663 Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + L E V DGR+ + TGR S QN+P + Sbjct: 664 LKSTYVDALPEQVEEDGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER---------- 712 Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 VR + L+ AD + IE R++A ++ ED I+AF NG Sbjct: 713 --------------GRQVRKAFVPKNEDYVLLAADYSQIELRIIAALSEEDTMIEAFKNG 758 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 EDI+ +T AK FN PI++V++EQR+ K + + Y G + S + Sbjct: 759 EDIHASTAAKVFNVPINEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLTRSESKDLIDT 818 Query: 462 FSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIG 500 + + + + S + ++ AV + G Sbjct: 819 YYKTYPKLRNYMSNLVDDAREDGYVSTVLGRRRYLKDINSSNGVVRGAAERNAVNAPIQG 878 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 +A +++K A H+ + + + + V +VP+ + K V Sbjct: 879 SAADIIKVAMINIHKKLAE--------GNFKTKMLLQVHDELVFDVPKNELEDIKTLVKT 930 Query: 561 VLPSSRRLVYS 571 + S+ L Sbjct: 931 EMESAYTLSVP 941 Score = 40.5 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M N K ++L VHDE+V + P + TL Sbjct: 876 IQGSAADIIKVAMINIHKKLAEGNFKTKMLLQVHDELVFDVPKNELEDIKTLVK 929 >gi|115357994|ref|YP_775132.1| DNA polymerase I [Burkholderia ambifaria AMMD] gi|115283282|gb|ABI88798.1| DNA polymerase I [Burkholderia ambifaria AMMD] Length = 917 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 101/538 (18%), Positives = 175/538 (32%), Gaps = 104/538 (19%) Query: 46 DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D EQ + L + L V + ++ + GI + T + + Sbjct: 381 DLPEQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYV 438 Query: 103 NGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQL 158 + LAL K E+ GK F + +++ Sbjct: 439 LESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD------ 492 Query: 159 FGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 T +L + L P D E + L+ + + G ID L+ Sbjct: 493 ----------ITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQ 542 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 IA +L+ +L G + + F + +V + S Sbjct: 543 AQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DE 600 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + +LA+D L +L + KL + L V+ GR+ + TGR + Sbjct: 601 EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLA 659 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R IAS G ++V AD Sbjct: 660 SNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSADY 695 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A I+G+ ++AFA GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 696 SQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 755 Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTS-TFEDWEQAE----------SHHLWM- 485 A L + ++ + ED A LW+ Sbjct: 756 GMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTRTAAKDKGYVETVFGRRLWLP 815 Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + A+ + GTA +L+K + A + ++Q+ +L Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDEL 873 >gi|307700631|ref|ZP_07637659.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] gi|307614161|gb|EFN93402.1| conserved hypothetical protein [Mobiluncus mulieris FB024-16] Length = 240 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 117/285 (41%), Gaps = 57/285 (20%) Query: 402 FANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 F NGED+Y T + F P++K V+ E R GK+ LA GY G K M Sbjct: 1 FKNGEDLYCATASAMFGVPVEKHGVNSELRQKGKIAVLACGYNGSVGALKAMG------- 53 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+K L + + AWRA + ++Q Sbjct: 54 ---------------------------------ALKMGLSKDELQPIVDAWRAANPNIVQ 80 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 LW D+ + G ++ R L + + I LPS RRL Y + Sbjct: 81 LWHDVDNAATRAISTGSPVTLR------NLGFEKKSGMLFINLPSGRRLAYVKPGIGMNR 134 Query: 580 LNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHD 630 + + + TYGGKL ENIVQA +RD+L E + G IV+ +HD Sbjct: 135 FGGTSITYWGQGVARKWQKLETYGGKLVENIVQATARDLLVEDITRIENAGNRIVMHIHD 194 Query: 631 EIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 E+V + P +V +C+L+ + P GLP+ A GYE Y+K Sbjct: 195 EVVIDEPINSGITVADICALLNELPERTAGLPIDAAGYECGFYQK 239 >gi|124004714|ref|ZP_01689558.1| DNA polymerase I [Microscilla marina ATCC 23134] gi|123989837|gb|EAY29366.1| DNA polymerase I [Microscilla marina ATCC 23134] Length = 955 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 111/627 (17%), Positives = 205/627 (32%), Gaps = 122/627 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLR 62 D ET S A+ A + A+A D+ E A+ + + Sbjct: 368 DTETTSLV----------AQDAELVGIAFATYAGEAYYVPTPADQKEAQAIVDEFKEVFE 417 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEH 121 DE++ +A N ++ ++ K I K ++LA P LA ++ + Sbjct: 418 DESIGKIAQNLKYDWVVLKNY---GIEPKGKFFDTMLAHYLLQPDMRHNMDVLAKSYLNY 474 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK------ 175 E +LI + KG D + Y D + T +L + Sbjct: 475 EP--VEITSLIGK--KGKKQGSMRDVELDKITE-------YAGEDADITLQLKEIFDAQI 523 Query: 176 ------RLIP------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 P L + E L + T+ G R+D + + KL + +A+E Sbjct: 524 KAQDLRHPAPEDGGEKVTLEKLLDEVETPLIEVLATVETNGVRLDSESLAKLSKELAKEV 583 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 L+E I K+ + L LF +D + + + +LA Sbjct: 584 VVLEEKIYKIAGEQFNIA-SPKQLGEILFGKLQLDPKAKKTKSGQYATGEEILVKLADKN 642 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + + KL + L E V+ L T + TGR S QN+P Sbjct: 643 EIVQHILDFRGLQKLKNTYVDALPELVNKKTGLIHTSYNQAVAATGRLSSTNPNLQNIPI 702 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAW 391 + VR I + + L+ AD + IE R++A Sbjct: 703 RT------------------------AQGREVRRAFIPRSDEFVLLAADYSQIELRIMAE 738 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV---- 447 + + IKAF NGEDI+ TT +K + P+D+V + R K + Y A Sbjct: 739 FSQDATMIKAFQNGEDIHATTASKIYKVPLDQVDSDMRRKAKTANFGIIYGISAHGLSER 798 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------- 488 G ++ + + + + D ++ + Sbjct: 799 LNIPRKEAGEIIKAYFEEFPAVKQYMDDMINKAREQEYVETILGRRRYLRNINSRNAVER 858 Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGG 536 A+ + G+A +++K A H+ +LQ+ +L ++ Sbjct: 859 GNAERNAINAPIQGSAADMIKIAMIRLHEFLKKEHLKSKMILQVHDEL---VFDAHKDEL 915 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLP 563 I + ++ + + R + + + Sbjct: 916 GILKPAIVDLMKNALSSINRTMQVPME 942 >gi|222099813|ref|YP_002534381.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] gi|221572203|gb|ACM23015.1| DNA-directed DNA polymerase I [Thermotoga neapolitana DSM 4359] Length = 893 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 99/589 (16%), Positives = 191/589 (32%), Gaps = 106/589 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57 +D+ET S I + ++ + +++ + S L Sbjct: 321 ALDLET-SSLDPFNC---------EIVGISVSFKPKTAYYIPLHHRNAQNLDETLVLSKL 370 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L D + V N ++ + + I +++A P+ K L+ Sbjct: 371 KEILEDPSSKIVGQNLKYDYKVL---MVKGISPVYPHFDTMIAAYLLEPNEKKFNLEDLS 427 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 KM + L+ F D Y D + T L+K L Sbjct: 428 LKFLGYKMTSYQELM-SFSSPLFGFSFADV-------PVDKAANYSCEDADITYRLYKIL 479 Query: 178 IPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E L + + G +D + + KL E ++ ++L E I ++ Sbjct: 480 SMKLHEAELENVFYRIEMPLVNVLARMELNGVYVDTEFLKKLSEEYGKKLEELAEKIYQI 539 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + LF GI + T + + ++A + + L Sbjct: 540 AGEPF-NINSPKQVSKILFEKLGIKPRGKTTKTGEYSTRIEVLEEIANEHEIVPLILEYR 598 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 I KL +TL + V+ GR+ + G + TGR S QNLP Sbjct: 599 KIQKLKSTYIDTLPKLVNPKTGRIHASFHQTG-TATGRLSSSDPNLQNLP---------- 647 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I+ +V AD + IE R+LA ++G++ +K Sbjct: 648 --------------TKSEEGKEIRKAIVPQDPDWWIVSADYSQIELRILAHLSGDENLVK 693 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAK-VFKTMASHCG 456 AF G D++ T ++ +N ++V++E R +GK++ ++ Y G Sbjct: 694 AFEEGIDVHTLTASRIYNVKPEEVNEEMRRVGKMVNFSIIYGVTPYGLSVRLGIPVKEAE 753 Query: 457 LDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVK 495 + + ++ D Q + Q + A+ Sbjct: 754 KMIISYFTLYPKVRSYIQQVVAEAKEKGYVRTLFGRKRDIPQLMARDKNTQSEGERIAIN 813 Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534 + GTA +++K A K + ++Q+ +L +E Sbjct: 814 TPIQGTAADIIKLAMIDIDEELRKRNMKSRMIIQVHDELVFEVPDEEKE 862 >gi|171321673|ref|ZP_02910595.1| DNA polymerase I [Burkholderia ambifaria MEX-5] gi|171093053|gb|EDT38279.1| DNA polymerase I [Burkholderia ambifaria MEX-5] Length = 917 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 99/538 (18%), Positives = 175/538 (32%), Gaps = 104/538 (19%) Query: 46 DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D EQ + L + L V + ++ + GI + T + + Sbjct: 381 DLPEQLPIDDVLARLRPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYV 438 Query: 103 NGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQL 158 + LAL K E+ GK F + +++ Sbjct: 439 LESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD------ 492 Query: 159 FGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 T +L + L P D E + L+ + + G ID L+ Sbjct: 493 ----------ITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQ 542 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 IA +L+ +L G + + F + +V + S Sbjct: 543 AQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DE 600 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + +LA+D L +L + KL + L V+ GR+ + TGR + Sbjct: 601 EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLA 659 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R IAS G ++V AD Sbjct: 660 SNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSADY 695 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A I+G+ ++AFA GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 696 SQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 755 Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWM- 485 A L + ++ + + + E LW+ Sbjct: 756 GMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAQYMEDTRTTAKEKGYVETVFGRRLWLP 815 Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + A+ + GTA +L+K + A + ++Q+ +L Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDEL 873 >gi|220906286|ref|YP_002481597.1| DNA polymerase I [Cyanothece sp. PCC 7425] gi|219862897|gb|ACL43236.1| DNA polymerase I [Cyanothece sp. PCC 7425] Length = 982 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 119/682 (17%), Positives = 220/682 (32%), Gaps = 127/682 (18%) Query: 7 DIETR--SPQPLPKVGVW----AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET SP+ VG+ +Q ++ D T L Sbjct: 395 DTETTALSPRDAQLVGIGCCWGPAPDQIAYLPLGHSQGGN----LDLT---LALEQLRPL 447 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D N+ ++R++ K G+ + + T + + S L+ + + Sbjct: 448 LEDARYPKAFQNTKYDRLVLK-FQGVHLQGVVF-DTMLASYVLNPEGSHNLTDLSRKYLD 505 Query: 121 -----HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + +E+G+ L S+++ C + + F K + K Sbjct: 506 ITAQSYTDLVEKGQNLADL----SVEAIANYC----GLDVYATFQLVPKLRADLLDANPK 557 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L L E+ L + + G RID D + +L + + Q+ L+E L + Sbjct: 558 LLDLLLTVEQPLEPVLAIMETCGIRIDQDYLKQLSQQLEQDLHALEERAYGLAGETF-NL 616 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 L LF +D+ + L + + ++ D + L + KL Sbjct: 617 GSPKQLSELLFNKLKLDVKKSRKTKLGYSTDAATLEKMQGDHPVIDLILEHRTLAKLKST 676 Query: 293 --NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L V SD GR+ + TGR S QN+P + Sbjct: 677 YVDALPNLVRSDTGRVHTDFN-QAITATGRLSSSNPNLQNIPIRT--------------- 720 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 S +R I G LV AD + IE R+LA ++ E ++A+ +D++ Sbjct: 721 ---------EFSRQIRKAFIPEPGWMLVTADYSQIELRILAHLSQEPRLVEAYQQHQDVH 771 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T + ++ E+R + K++ + Y GA+ F A G+ +Q + Sbjct: 772 KLTAQLL--LEKEDINPEERRLAKIINFGVIYGMGAQRF---ARESGVSFKQAKGFID-- 824 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 +E + + M+ Q + L+G Sbjct: 825 RFYERYPLVFRYLKQMEGQAIALGYVETLLGR---------------------------- 856 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 R R++ L +++ ++ +R Sbjct: 857 ------------------RRYFSFDSRELQ-QLRGKDPDSLAELDLSQLKVSQYDRGQLR 897 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645 +Q S DI+ M + ++L VHDE+V E P + + + Sbjct: 898 AAANAP------IQGSSADIIKVAMIKLQQRLQPYQTRLLLQVHDELVFEMPPSEWEPLR 951 Query: 646 TLCS-LMTKNPSWAKGLPLKAE 666 +L M + +PL AE Sbjct: 952 SLIQATMAEAVP--LSIPLLAE 971 >gi|148653845|ref|YP_001280938.1| DNA polymerase I [Psychrobacter sp. PRwf-1] gi|148572929|gb|ABQ94988.1| DNA polymerase I [Psychrobacter sp. PRwf-1] Length = 1022 Score = 257 bits (657), Expect = 3e-66, Method: Composition-based stats. Identities = 90/503 (17%), Positives = 174/503 (34%), Gaps = 74/503 (14%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLART--NGLPS 107 + + L L + + + + ++ + K + +++ K W ++LA N + Sbjct: 482 DTVLAKLKPILENPNIGKIGQHLKYDAHVLSKYGIELNMSPKNWEMDTMLASYVLNAAAT 541 Query: 108 SLKNACLALNFSEHLT---KMEEGKALIA-RFCKGSID-SPPYDCTRANHV-QAWQLFGE 161 LA ++ T + GK F K +I+ + Y C A+ Q ++LF + Sbjct: 542 RHSMDDLARHYLHTQTISFEDVAGKGAKQVTFDKVAINIASDYACEDADITYQLFELFQD 601 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 K D R L + IP++ + + G I + +L E +E L+ Sbjct: 602 KLKDDAVNQRLLHELEIPVAQ-------ILCQMESEGIMIKRSFLNELSERFDEEIVALE 654 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + + G + L LF G+ ++ + + ++++ + L Sbjct: 655 KQAY-IEAGEAFNLGSPKQLGEMLFDKLGVIGGKKTKSG-QYSTGEAVLSKI--EHPLAE 710 Query: 282 LASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +A ++ KL + L +D T + TGR S QN+P + ++ Sbjct: 711 IALEYRSLAKLKNTYTDALDAVADNDTDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTKT 770 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G+ L+ AD + IE R++A +G+D Sbjct: 771 ------------------------GRLIRQAFIAPKGRVLLAADYSQIELRLMAHFSGDD 806 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM----A 452 +AF G DI+ T A+ +D V+ +R K + L Y A Sbjct: 807 NLTRAFNEGLDIHSATAAEVLGKSVDDVTPTERRNAKAINFGLLYGMSAFGLAKQIQMGR 866 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 S + Q+ + + + ++ Sbjct: 867 SEAQDYINQYFARYPGVQRYMQETRNSAVDNGYIETILGRKLYTPDIQHSNQMVRRGAER 926 Query: 492 FAVKDKLIGTACELVKKAWRAKH 514 A+ L G+A +L+K A A Sbjct: 927 AAINAPLQGSAADLIKLAMIAVD 949 >gi|38146987|gb|AAR11878.1| DNA polymerase I [Tepidomonas sp. HM1] Length = 927 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 86/596 (14%), Positives = 183/596 (30%), Gaps = 112/596 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA-----MPSD--- 56 +D ET S + A + +++ + +P D Sbjct: 354 ALDTETTSLDEMA----------ARLVGISFSVAPGEAAYLPLAHEDPGTAGQLPLDEVL 403 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L +L D + +++ + GI + T + + + L Sbjct: 404 ARLRPWLEDPAAAKCGQHIKYDQHVLANH-GILVQGY-VHDTMLQSYVLEVHRPHNLESL 461 Query: 115 ALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A G++ + C P+ + Y D E Sbjct: 462 AERHL--------GRSAMRYEDLCGKGAAQIPFARVPI------ERAAPYACEDAEQCLA 507 Query: 173 LFKRLIPLSDG---ERDLWLLDQ-------TINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + + L P + ++ L+ + G ID + + + + + + L+ Sbjct: 508 VHQVLWPQLQAQPALQRIYELEVAVSGVLWRMERHGVLIDAAELQRQSQALGERIRALEA 567 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + L + + + + ++ + T + +LA+D L Sbjct: 568 EAHALAGMPF-NLGSPKQIAEVFYDRLKLPVLKKT-ATGAPSTDEEVLEKLAEDYPLPAR 625 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 +++KL + L ++ GR+ + TGR + QN+P + Sbjct: 626 VLEHRSLVKLKSTYTDKLPTMINPATGRVHTHFA-QAVAVTGRLASAEPNLQNIPIRT-- 682 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R+ IA G + AD + IE R++A ++ + Sbjct: 683 ----------------------PEGRRIRAAFIAPPGHVIASADYSQIELRIMAHLSQDP 720 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 ++AF G D++ T A+ F + V+ EQR K + L Y AK A Sbjct: 721 ALLRAFEQGLDVHRATAAEVFGVSPEHVTPEQRRYAKTINFGLIYGMSPYGLAKALGIDA 780 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------YPEF------------- 492 S ++++ + + + +A++ + PE Sbjct: 781 SAAKSYIERYFERFAGVRAYMEQTRAQARARGYVETVFGRRLVLPEIQSPNGPRRAAAER 840 Query: 493 -AVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +L+K + A + Q ++ + + V R Sbjct: 841 AAINAPMQGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDWVR 896 Score = 40.9 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + D++ M + +VL VHDE+V E P+ V + LM Sbjct: 848 QGTAADLIKMSMVAVQRALDEQQRRTRMVLQVHDELVFEVPNEEVDWVRTEVPRLMAAV 906 >gi|313148069|ref|ZP_07810262.1| DNA polymerase I [Bacteroides fragilis 3_1_12] gi|313136836|gb|EFR54196.1| DNA polymerase I [Bacteroides fragilis 3_1_12] Length = 941 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 92/584 (15%), Positives = 181/584 (30%), Gaps = 100/584 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQ 59 L +D ET P+ A + +++ + + + + Sbjct: 371 LALDTETTGTDPM----------DAELVGMSFSIAENQAFYIPVPAGREEATKIVREFES 420 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 +++ + V N ++ ++ + GI+I + + T V LA + Sbjct: 421 VFKNDKSLKVGQNIKYDMLVLQNY-GIEIRGRLF-DTMVAHYVLQPELRHNMDYLAEIYL 478 Query: 120 EHLTKMEE------GKALIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVEATR 171 + T E GK D Y C A+ + L E K D E Sbjct: 479 HYQTIHIEELIGPRGKGQKNMRDLSPKDVYLYACEDADVTLKLKNILEQELKKNDAE--- 535 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L + E L + I G R+D + + + E + ++++I L Sbjct: 536 ----KLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYNLAGEE 589 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + LF I T + + S + L + + K Sbjct: 590 FNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDVIGKILEYRGLKK 648 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + ++ GR+ + + TGR S QN+P + Sbjct: 649 LLSTYIDALPQLINPRTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR------------ 695 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I +G AD + IE R++A ++ + I AF +G Sbjct: 696 ------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSKDKNMIDAFLSG 743 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T AK + I +V+ + R K + Y G A+ + Sbjct: 744 YDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDG 803 Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500 + + + D S + ++ A+ + G Sbjct: 804 YFETYPQVKAYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQG 863 Query: 501 TACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 +A +++K A ++ +LQ+ +L +E Sbjct: 864 SAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPVKEKE 907 >gi|260910758|ref|ZP_05917412.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] gi|260635119|gb|EEX53155.1| DNA-directed DNA polymerase I [Prevotella sp. oral taxon 472 str. F0295] Length = 927 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 91/589 (15%), Positives = 195/589 (33%), Gaps = 110/589 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQY 60 + +D ET S + +A + ++A +++ V + ++ +++ + + Sbjct: 357 ISLDTETTSTNAI----------EAQLVGLSFAIEEKKAYYVPVPEQADEAQNIVNRFKA 406 Query: 61 L-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116 + + + V N ++ + + I + + +++A P ++ Sbjct: 407 IYENPKTLKVGQNIKYDLEVLRNY---GIALQGPLFDTMVAHYLLQPELRHNMDFMAEVY 463 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 E + ALI K + + Y D + T +L Sbjct: 464 LNYETVHID----ALIGPKGKAQKNMRELAPSEV---------YNYACEDADITLQLKNV 510 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P ++ E L + + G RID + + ++ + +L+++I + Sbjct: 511 LQPKLVEAGVERLFNEVEMPLIPVLAEMECNGVRIDTAALKETSQVFTERMLQLEQEIYQ 570 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF I T + + S + L + Sbjct: 571 AAGKTF-NVASPKQVGDILFGEMKIIDKPKKTKTGQYVTSEEVLQTLRSKHPIVAHILDY 629 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 A+ KL + L + ++ G + + + TGR S QN+P Sbjct: 630 RALKKLLGTYVDALPKLINPRTGHIHTSFN-QAVTATGRLSSSDPNLQNIP--------- 679 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G +R C I G + AD + IE RV+A ++ + + Sbjct: 680 ---------------VRGEDGKEIRKCFIPEEGCEFFSADYSQIELRVMAHLSQDANMLD 724 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T AK +N P+ +V++++R K + Y G A + Sbjct: 725 AFREGYDIHAATAAKIYNKPVSEVTRDERTKAKRANFGIIYGITVFGLADRLNIERAEAK 784 Query: 457 LDL----------QQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVK 495 + QQ+ + K T+ + S + ++ A+ Sbjct: 785 QLIDGYFKMFPQVQQYMEQAKETARANGYVETFFHRRRYLPDINSGNATVRAIAERNAIN 844 Query: 496 DKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534 + G+A +++K A + + +LQ+ +L +E Sbjct: 845 APIQGSAADIIKVAMVRIFQRFQRENIRSKMILQVHDELNFSVLPTEKE 893 >gi|86747974|ref|YP_484470.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] gi|86571002|gb|ABD05559.1| DNA polymerase I [Rhodopseudomonas palustris HaA2] Length = 1032 Score = 257 bits (656), Expect = 4e-66, Method: Composition-based stats. Identities = 93/516 (18%), Positives = 179/516 (34%), Gaps = 81/516 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--CTSVLARTNGLPS--SLK 110 L L + + N F +L + G+ + + + + VL G +L Sbjct: 504 DALRPLLDSAGLAKIGFNIKFTAVLLAQH-GVTLRNIDDVQLISYVLDAGRGSHGLDALS 562 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169 + L GKA IA + Y R++ ++ W++ E Sbjct: 563 ESNLGHTLHVLGALTGSGKAKIAFDQVPIDRATEYGGERSDVALRLWRVLKPRLV--AER 620 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +++ L ER L + + RG ID ++ +L AQ +++ +I +L Sbjct: 621 MMAVYETL------ERPLVGVLARMERRGISIDRQVLSRLSADFAQTAARIEAEIRELAG 674 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288 I + L LF G+ ++ T S + +LA+ R Sbjct: 675 EDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHEFPRKILDWRQ 732 Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KL + L V + T A+ TGR S QN+P + Sbjct: 733 VSKLRSTYTDALPTYVHPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------- 785 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A+ G +LV AD + IE R+L+ +A KAF Sbjct: 786 -----------------GRKIRRAFVATPGHRLVSADYSQIELRLLSEVADVPALRKAFQ 828 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +G DI+ T ++ F P++ + + R K + + Y G A G + Sbjct: 829 DGIDIHAMTASEMFGVPVEGMPSDIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYI 888 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + ++ + ++ A+ +L Sbjct: 889 KRYFERFPGIRAYMDETRDFCRTHGYVETLFGRKCHYPDIKASNPSIRAFNERAAINARL 948 Query: 499 IGTACELVKKAW----------RAKHQGVLQLWKDL 524 G+A +++++A + Q +LQ+ +L Sbjct: 949 QGSAADIIRRAMVRMEDALAEKKLAAQMLLQVHDEL 984 >gi|218258588|ref|ZP_03474931.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] gi|218225358|gb|EEC98008.1| hypothetical protein PRABACTJOHN_00586 [Parabacteroides johnsonii DSM 18315] Length = 940 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 84/530 (15%), Positives = 162/530 (30%), Gaps = 91/530 (17%) Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L++ + N F+ ++ +K GI I + T + + Sbjct: 419 ALQNPKSFKIGQNIKFDILVVRKY-GIRIAGPLF-DTMIAHYLLNPELRHGMD----YLA 472 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 E K + + KG D + Y D + T +L P Sbjct: 473 ETYLKYKTVRIEELIGPKGRKQLCMRDVPIPQVAE-------YAAEDADITLKLKNYFAP 525 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 D E L + + G +D + + E + KKL+++I +L Sbjct: 526 CLDKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTIALKQSSEELTTALKKLEKEIYELAG 585 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 I + + LF I+ T S + ++ + + Sbjct: 586 -IKFNINSARQVGEVLFDHLKIEEKAKKTKTGSYSTSEEILEKMRSKHPVVEKLLEYRGL 644 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L E ++ G++ + + TGR S QN+P Sbjct: 645 KKLLSTYIDALPELINPETGKIHTSYN-QAVTSTGRLSSTNPNLQNIP------------ 691 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R A AD + IE R++A ++ + I+AF Sbjct: 692 ------------VRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAHLSQDAHMIEAF 739 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 +G DI+ T AK + P+++V+ + R K + Y G A+ + Sbjct: 740 RSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAERLNIPRAESKEL 799 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++ + + + D SH+ ++ A+ Sbjct: 800 IEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDINSHNAIVRGYAERNAINAP 859 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGS 537 + G+A +++K A K + +LQ+ +L E Sbjct: 860 IQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDEMEKVK 909 >gi|91203357|emb|CAJ71010.1| stongly similair to DNA polymerase I [Candidatus Kuenenia stuttgartiensis] Length = 887 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 103/565 (18%), Positives = 191/565 (33%), Gaps = 107/565 (18%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYL 61 ID+ET PL VG+ EQ AY P T +P ++ + L Sbjct: 316 AIDLETTGTDPLKAHIVGLSFSWEQKE----AYYVPLMAPENTRHLTADIVLP-EIRKVL 370 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119 DE+ + N ++ ++ KK +I K S++A P+ + +A + Sbjct: 371 EDESKKKIGQNIKYDLLVLKKH---NIGLKGIYFDSMIASYLLNPAKRNHNLDDIAFEYL 427 Query: 120 EHLTKM-----EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + T M GK I ++D P D +Y +D + T L Sbjct: 428 SYKTIMIAELIGSGKQQI------TMDKVPVD-----------KVCQYACQDADITFRLA 470 Query: 175 KRLIPLSDGERDLWLLDQTIND-----------RGYRIDLDLVLKLQELIAQERKKLDED 223 + + PL E LW L Q I G I+ D + ++ +A + + L+++ Sbjct: 471 ETMAPLLKKE-GLWQLFQEIEIPLIYVLAEMEGNGICINADFLRQMSGDLAAQLQCLEKE 529 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I ++ + + L LF + + ++ + + + LA L +LA Sbjct: 530 IYRVAEQEF-NISSHKQLGAILFDKFQLPKLRRTKTGV--STDANVLASLAWRHPLPKLA 586 Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L ++ D G++ T + TGR S QN+P Sbjct: 587 LEYRQLAKLKSTYADALPNLLNQDTGKIHTTFN-QTVTSTGRLSSSNPNLQNIP------ 639 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396 +R I + AD + IE R+LA + + Sbjct: 640 ------------------VKTDIGKQIRRAFIPSGKNAVFLSADYSQIELRILAHFSEDT 681 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 ++AF DI+ + ++ P++ V+ E R K + + Y G ++ Sbjct: 682 ALMEAFREDLDIHAAVASSIYHVPLENVTTEMRRNAKAINFGIIYGLNEYGLSRDTGLSL 741 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPE 491 + + + + F D E+ + Sbjct: 742 NDAKDFIDAYFTLYQGVREFRDKVVEEAKEMGYVKTLFNRKRAIPDINAKNKRFRNLAER 801 Query: 492 FAVKDKLIGTACELVKKAWRAKHQG 516 A+ + G+A +L+K A + Sbjct: 802 IAINTIIQGSAADLIKVAMNNIYSK 826 >gi|170701220|ref|ZP_02892190.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] gi|170133887|gb|EDT02245.1| DNA polymerase I [Burkholderia ambifaria IOP40-10] Length = 917 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 99/538 (18%), Positives = 175/538 (32%), Gaps = 104/538 (19%) Query: 46 DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D EQ + L + L V + ++ + GI + T + + Sbjct: 381 DMPEQLPIDDVLARLKPWLESADRKKVGQHLKYDAQVLANY-GIALNGIE-HDTLLESYV 438 Query: 103 NGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQL 158 + LAL K E+ GK F + +++ Sbjct: 439 LESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALEQAAAYAAEDAD------ 492 Query: 159 FGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 T +L + L P D E + L+ + + G ID L+ Sbjct: 493 ----------ITLQLHQALYPQVAREAGLERVYRDIEMPVSLVLRKMERTGVLIDDALLQ 542 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 IA +L+ +L G + + F + +V + S Sbjct: 543 AQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DE 600 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + +LA+D L +L + KL + L V+ GR+ + TGR + Sbjct: 601 EVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLA 659 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R IAS G ++V AD Sbjct: 660 SNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSADY 695 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R++A I+G+ ++AFA GEDI+ T A+ F +V+ +QR I KV+ L Y Sbjct: 696 SQIELRIMAHISGDASLLRAFAQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIY 755 Query: 442 QGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWM- 485 A L + ++ + + + E LW+ Sbjct: 756 GMSAFGLASNLGITRDAAKLYIDRYFTRYPGVAHYMEDTRTTAKDKGYVETVFGRRLWLP 815 Query: 486 ---------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + A+ + GTA +L+K + A + ++Q+ +L Sbjct: 816 EINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDQLASRMIMQVHDEL 873 >gi|56751326|ref|YP_172027.1| DNA polymerase I [Synechococcus elongatus PCC 6301] gi|56686285|dbj|BAD79507.1| DNA polymerase I [Synechococcus elongatus PCC 6301] Length = 964 Score = 257 bits (656), Expect = 5e-66, Method: Composition-based stats. Identities = 119/653 (18%), Positives = 208/653 (31%), Gaps = 144/653 (22%) Query: 36 AWDDEPVKL--WDRT--EQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGI 86 AW +EP +L E +P +L LR + N+ F+R++ + Sbjct: 401 AWGEEPDQLAYIPLGHEEGEQLPLQTVLTALRPILESDRHPKALQNAKFDRLILRHQ--- 457 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 I + ++LA P SL ++ AL + + D P Sbjct: 458 GIELAGVVFDTMLASYLLNP-SLGHSLDAL-----------ADRWLKLQTRSYSDLVPKG 505 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLDQTIN 195 T A A +YC DV + L L L E L + + Sbjct: 506 KTIAQVAIA--AVAQYCGSDVHVVQRLIPLLKAGIAESPALQFLLETVELPLEAVLAEME 563 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 DRG RID + +L E + E +L+ L + L LF G+++ Sbjct: 564 DRGIRIDEGYLAELSEHLKGELDRLEGAAHTLAGDRF-NLGSPKQLSELLFEKLGLNVKK 622 Query: 256 MSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQ 310 + + + +L D + L + KL + L V++DGR+ Sbjct: 623 SRKTKTGYSTDAAVLEKLQGDHPIIDLILEHCTLAKLKSTYVDALPSLVAADGRIHTDFN 682 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P + S +R + Sbjct: 683 -QAVTATGRLSSSNPNLQNIPIRT------------------------EFSRQIRKAFLP 717 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G L AD + IE R+LA ++ E ++A+ G+D++ T + F+ ++++ E+R Sbjct: 718 REGWLLAAADYSQIELRILAHLSQEPVLLEAYRQGDDVHRLTASLLFD--REEITSEERR 775 Query: 431 IGKVMELALGYQGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 IGK++ + Y GA+ F + + +F T+ Sbjct: 776 IGKIINFGVIYGMGAQRFARETGSSTKEAQGFIDRFYDRYPRVFTY-------------- 821 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 L + + + + G + + Sbjct: 822 -----------LQSLERQAIARGYVETVLGRRRYFD------------------------ 846 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 L R + D + +QL+R +Q S Sbjct: 847 ----------FEDTGLQKLRGSDPESIDLDKIRPSRFEAQLLRAAANAP------IQGSS 890 Query: 607 RDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 DI+ M Y ++L VHDE+V E P + S+ + M + Sbjct: 891 ADIIKVAMVQLQALLQSYQARMLLQVHDELVLELPPEEWDSLAPQIQQTMEQA 943 >gi|307717956|ref|YP_003873488.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] gi|38146989|gb|AAR11879.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] gi|306531681|gb|ADN01215.1| DNA polymerase I [Spirochaeta thermophila DSM 6192] Length = 897 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 85/591 (14%), Positives = 172/591 (29%), Gaps = 106/591 (17%) Query: 34 AYAWDDEPVKLWDRTEQS--AMPSDLLQ-----YLRDETVMCVAHNSLFERILFKKTLGI 86 ++A D+ +P+D+++ L V+ V N F+ + ++ Sbjct: 349 SFAVDEGRACYVPLAAPDVRPLPADVVREVLSPLLVSTEVVKVGQNLKFDYHVLRRWGVR 408 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + + ++ A F + Sbjct: 409 PEGPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPV------ 462 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE----------RDLWLLDQTIND 196 G Y D + L + L + E L + + + Sbjct: 463 ----------AEAGVYAAEDADIALRLSRVLKERLEAEGLGRVFYEMEMPLLSILARMEE 512 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G +D + + + + ++++I +L + T L+ LF+ G+ V Sbjct: 513 WGIGLDGEALSAFGRELEERISTIEKEIFELVGHEF-NVGSTKQLQEVLFVERGLPPVKK 571 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQ 310 ++ S + +LA + ++ KL + L V+ GRL Sbjct: 572 TKTGF--STDTSVLEELAARDPVAAKVLEYRSLTKLKNTYVDVLPGLVNPGTGRLHTWFS 629 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 G + TGR S QN+P + +R + Sbjct: 630 QVG-TATGRLSSKDPNLQNIPIKT------------------------EEGRRIREAFVP 664 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G + AD + IE +LA ++ + +AF GED++ T + F P + V+ EQR Sbjct: 665 QRGWWFLSADYSQIELVILAHLSEDPALCRAFREGEDVHRATGSLLFGVPPEAVTPEQRR 724 Query: 431 IGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 I K + + Y A + + + F + AE+ Sbjct: 725 IAKTINFGVIYGMSAFRLSRELGIPRKEAERFIDAYFTTYAGVRAFIERTIAEAEEKGYV 784 Query: 487 DQ---------------------YPEFAVKDKLIGTACELVKKAWRA----------KHQ 515 AV + G+ +++K A + Sbjct: 785 TTLFGRKRPLPYITSRNKTQKTGAERIAVNTPIQGSGADIIKLAMIDLDAQMRRMGLASR 844 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 +LQ+ +L V +R+ + R + + + R Sbjct: 845 MILQVHDEL----IFEVPPEELEVMKRLVRERMEGVVRLSVPLRVEMGVGR 891 >gi|90408664|ref|ZP_01216816.1| DNA polymerase I [Psychromonas sp. CNPT3] gi|90310240|gb|EAS38373.1| DNA polymerase I [Psychromonas sp. CNPT3] Length = 936 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 99/561 (17%), Positives = 187/561 (33%), Gaps = 104/561 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + D P +L E A L L V N F R + + GI+ Sbjct: 388 AFYLPLAHDYIDAPAQL----EYLATLDKLKPLLEKIAPQKVVFNLKFMRSVL-RLEGIN 442 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSE-----HLTKMEEGKALIARFCKGSIDS 142 + + + + A L L + + + +GK + F + SI Sbjct: 443 LQGVAF-DPMLESYLLDSTGKHDKASLTLKYLQIEIASYEAIAGKGKKQLP-FNQVSIKD 500 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLD 191 Y VE + L L P D E L ++ Sbjct: 501 I----------------TPYVGEHVELSLRLHLLLWPKLEKFPKLVALYEDIELPLAIVL 544 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G ID ++ I + +++++ + G + L+ LF + Sbjct: 545 SDVELGGVEIDATMLGAQSVEIGKRLLEIEKEAY-IEAGKEFNLSSPKQLQSILFEDLEL 603 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 ++ + S + +LA+ L +L + KL + L + +++ GR+ Sbjct: 604 PILKKTPKGAPST-GEEVLVELAETYKLPKLVIEHRGLSKLKSTYTDKLPKMINAQTGRV 662 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 + + TGR S QN+P + +R Sbjct: 663 HTSY-HQAVTVTGRLSSSDPNLQNIPIRS------------------------EQGRRIR 697 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 IA G K+V AD + IE R++A ++ + ++AF+ G DI+ T ++ F+ +D+V+ Sbjct: 698 QAFIAPQGYKIVAADYSQIELRIMAHLSQDKGLLEAFSTGLDIHKATASEVFSVSVDEVT 757 Query: 426 KEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 QR K + L Y AK K S L + ++ T+ + ++ Sbjct: 758 TNQRRSAKAINFGLIYGMSAFGLAKQLKISRSDAKLYMDKYFHRYPGVLTYMQTTRDKAR 817 Query: 482 HLWMQDQY---------------------PEFAVKDKLIGTACELVKKAW-------RAK 513 + A+ + GTA +++KKA + Sbjct: 818 EQGFVETILGRRLQLPHINSRNGILKKASERAAINAPMQGTAADIIKKAMLDVAAWVEKQ 877 Query: 514 HQGVLQLWKDLTEGFACVVQE 534 +QL + + ++E Sbjct: 878 APSQVQLLMQVHDELVFCIKE 898 >gi|255034889|ref|YP_003085510.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] gi|254947645|gb|ACT92345.1| DNA polymerase I [Dyadobacter fermentans DSM 18053] Length = 963 Score = 256 bits (655), Expect = 6e-66, Method: Composition-based stats. Identities = 93/575 (16%), Positives = 193/575 (33%), Gaps = 107/575 (18%) Query: 7 DIETRS--PQPLPKVGV---WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 D ET S VG+ + E I PV DR + + Sbjct: 395 DTETTSLDTTDAELVGLSFSYLAGEAFYI----------PVP-ADRQQAEEIVGYFRAVF 443 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 +E + + N ++ ++ K GI++ K T + LA ++ + Sbjct: 444 ENENIEKIGQNIKYDMLVLKNY-GIEVHGKL-SDTMLAHYLLEPDKRHGMDILAASYLNY 501 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRL 177 +LI + KG D +Y D + T +L + L Sbjct: 502 EP--VSITSLIGK--KGGKQGNMRDVAIPEIT-------QYAGEDADITFQLHSIFSREL 550 Query: 178 IPLS------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++ + E L + ++ + G R+D++ + ++ ++ + ++ + +I + Sbjct: 551 PKVNAAKLFNEVEMPLTKVLASMENTGVRLDINALKEMSAVLESDLRQTESEIYEAAGQS 610 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF + T + ++ L + ++ R + K Sbjct: 611 F-NISSPKQLGEVLFEKMKLIEKPKKTKTGQYATGEEILSDLEANHLIARKILDYRELQK 669 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L VSS GR+ + + TGR S QN+P + Sbjct: 670 LKSTYVDALPTMVSSRTGRIHTSYN-QAVAATGRLSSTNPNLQNIPIRT----------- 717 Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + + +++ AD + IE R++A +G+ +AF Sbjct: 718 -------------PRGREIRKAFVPDSADFQILSADYSQIELRIMAAFSGDASMTEAFNQ 764 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G DI+ TT +K F P+++V+ + R K++ + Y G A+ ++ Sbjct: 765 GRDIHATTASKVFQVPLEEVTSDMRRKSKMVNFGIIYGISAFGLAQRLGIPRGEASEIIR 824 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 + + + + D S + + A+ + Sbjct: 825 AYFEEFPAVKGYMDKVVNDAREREYVETILGRRRYLPDINSRNQTNRGYAERNAINAPIQ 884 Query: 500 GTACELVKKAWRAKH----------QGVLQLWKDL 524 G+A +++K A H + +LQ+ +L Sbjct: 885 GSAADMIKVAMINIHDFMAKEKLKSRMILQVHDEL 919 >gi|294675119|ref|YP_003575735.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] gi|294471965|gb|ADE81354.1| DNA-directed DNA polymerase [Prevotella ruminicola 23] Length = 921 Score = 256 bits (654), Expect = 8e-66, Method: Composition-based stats. Identities = 92/591 (15%), Positives = 186/591 (31%), Gaps = 108/591 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQS-AMPSDL 57 L +D ET S + A + ++A + V + E++ + + Sbjct: 349 KILSLDTETTSTSAI----------DAELVGLSFAVKEFEAFYVPVPANREEALQIVNIF 398 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC--LA 115 + ++ V N ++ + + GI++ K W +++A P N Sbjct: 399 KPAYENPEILKVGQNLKYDLEVLRNY-GIELKGKMW--DTMIAHYLIQPELHHNMDYMAE 455 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + +EE + K PP EY D + T L Sbjct: 456 IYLNYQTIHIEELIGPKGKNQKSMRSLPPSQV------------YEYAAEDADITLRLKN 503 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +L P + E L + + G +D + + + +++ I Sbjct: 504 KLEPELKKAECEDLFYNIEMPLMPVLAEMELNGVCLDTASLAETSKQFTNRMNEIEARIY 563 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + + LF I T + + S + QL + Sbjct: 564 ELAGEQFNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLQQLRNKHEIVADILE 622 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ G + + + TGR S QN+P + Sbjct: 623 HRGLKKLIGTYIDALPKLINPKTGHIHTSFN-QTITATGRLSSSDPNLQNIPIR------ 675 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 G +R I G AD + IE RV+A ++ + I Sbjct: 676 ------------------GEDGKEIRKAFIPEPGCLFFSADYSQIELRVMAHLSQDAEMI 717 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 K F+ G+D++ T A + PI++V++++R K + Y G A+ Sbjct: 718 KVFSEGKDLHAATAANIYKKPIEEVTRDERTKSKRANFGIIYGITVFGLAERLDIPRDEA 777 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + + SH+ ++ A+ Sbjct: 778 KMLIDGYFDTFPQVHDYMEKSKEVAREKGYVTTLFGRRRYLPDINSHNATVRGFAERNAI 837 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 + GTA +++K A + + +LQ+ +L +E Sbjct: 838 NAPIQGTAADIIKVAMIRIYNRFKAEGIRSKMILQVHDELNFSVYPDEKEK 888 >gi|319900544|ref|YP_004160272.1| DNA polymerase I [Bacteroides helcogenes P 36-108] gi|319415575|gb|ADV42686.1| DNA polymerase I [Bacteroides helcogenes P 36-108] Length = 952 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 96/590 (16%), Positives = 186/590 (31%), Gaps = 112/590 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQS-AMPSDL 57 L ID ET +P+ AE L ++ D V + E++ + ++L Sbjct: 382 LSIDTETTGTEPME-------AE-----LVGMSFSDAENQAYYVPVPPIREEALKIVNEL 429 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLA 115 +E + V N ++ I+ + +I K + ++LA P + Sbjct: 430 RPLYENEKSLKVGQNIKYDMIVLQNY---EIQVKGPLFDTMLAHYVLQPELRHNMDYLAE 486 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++E LI K + Y D + T +L Sbjct: 487 IYLHYQTIHIDE---LIGPRGKNQKNMRDLSPEEV---------YRYACEDADVTLKLKN 534 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L + E L + I G R+D + + + E ++++++I Sbjct: 535 ILEKELKEQGGEHLFHEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTIRLQEIEKEIY 594 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L D + + LF I T + + S + L + Sbjct: 595 ALADETFNIA-SPKQVGEILFDKLRIVEKAKKTKTGQYVTSEEVLESLRGKHGIIGKILE 653 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL ++L + ++ G + + + TGR S QN+P + Sbjct: 654 YRGLKKLLSTYIDSLPQLINPRTGHIHTSFN-QAVTATGRLSSSNPNLQNIPIR------ 706 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I +G + AD + IE R++A ++ + I Sbjct: 707 ------------------DEDGKEIRKAFIPDDGCEFFSADYSQIELRIMAHLSEDRNMI 748 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF +G DI+ T AK + T I V+ + R K + Y G A+ Sbjct: 749 DAFRSGYDIHAATAAKIYKTDISDVTADMRRKAKTANFGIIYGISVFGLAERMNVSRQEA 808 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + + + D S + ++ A+ Sbjct: 809 KELIDGYFETYPQVKEYMDRSIRIARENGYVETIFHRKRFLPDINSRNAVVRGYAERNAI 868 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A H+ +LQ+ +L +E Sbjct: 869 NAPIQGSAADIIKVAMAHIHRRFVSNNLKAKMILQVHDELNFSVPASEKE 918 >gi|224368350|ref|YP_002602513.1| PolA [Desulfobacterium autotrophicum HRM2] gi|223691066|gb|ACN14349.1| PolA [Desulfobacterium autotrophicum HRM2] Length = 891 Score = 256 bits (654), Expect = 9e-66, Method: Composition-based stats. Identities = 99/564 (17%), Positives = 182/564 (32%), Gaps = 92/564 (16%) Query: 4 LFIDIETRSPQP-LPK-VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 L +D ET S P L K VG+ E +A + + K D + A+ + Sbjct: 315 LSVDTETTSKHPMLAKLVGISFAVEPHRAYYIPVGHT-GMDAKKQPDLSRVIAL---IRP 370 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116 L + V V N ++ I+ + GI + + T + + SL + L Sbjct: 371 LLENPEVKKVGQNIKYDYIVLTRH-GIRMQGLGF-DTMIASHLLNPSQRGHSLDKIAMDL 428 Query: 117 NFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-----HVQAWQLFGEYCKRDV 167 + +E GK I + Y A+ H Q E D+ Sbjct: 429 -LDHKTIRYKEVTGSGKTQIGFNEVEIQTALDYAAEDADITLLCHGILKQKLQESNLLDL 487 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ E L + + G ++D + +L + QE L+ I L Sbjct: 488 ------------MNQVEMPLITVLADMEMHGIKVDRKKLGELSKTFEQEMMTLETQIYAL 535 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + L LF + ++ + +LA+ L Sbjct: 536 AGETF-NINSSQQLGTILFEKLQLPAKKKTKKKTGYSTDVEVLNELAEHHELPEKILRYR 594 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL + L E + GR+ + + TGR S QN+P + Sbjct: 595 SLGKLKSTYSDALQELIHPETGRIHTSFN-QAITATGRLSSSDPNLQNIPIRT------- 646 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + G LV AD + IE R+LA A ++ I++ Sbjct: 647 -----------------NEGKMIREAFVPEPGHILVAADYSQIELRLLAHFAEDEILIQS 689 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F N EDI+ T A+ F + ++++ R K + + Y AK Sbjct: 690 FRNDEDIHTRTAAEVFQAFPEFITEDLRRQAKAINFGIMYGMSAFKLAKEINVTRKTAQT 749 Query: 458 DLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKD 496 + + F D ++ ++ ++ A+ Sbjct: 750 YIDSYFARYAGVKRFIDKTIEQAKTTGEVTTILGRKRRLNDINASNVNLRKLAERAAINT 809 Query: 497 KLIGTACELVKKAWRAKHQGVLQL 520 + G+A +L+K A + + + Sbjct: 810 PVQGSAADLIKLAMINMDRELKKT 833 >gi|257092739|ref|YP_003166380.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045263|gb|ACV34451.1| DNA polymerase I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 922 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 95/592 (16%), Positives = 187/592 (31%), Gaps = 97/592 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAE----QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S PL V +A A+ + P + + + L + Sbjct: 344 ALDTETTSLDPLAARIVGISLAVAPGEAAYLPLAHDYPGVPAQ---LPCDEVL-ARLKSW 399 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + + +++ + GI + R T + + S K+ + Sbjct: 400 LESPGHAKIGQHLKYDQHVLANH-GIALAGVR-HDTLLQSYVLE---SGKDGVRGHDLG- 453 Query: 121 HLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 L G A I C + ++ + + L L Sbjct: 454 QLATRHLGLATIPYEALCGKGANQIGFEQVAIGQAAEYAAEDADLCQ------RLHAVLY 507 Query: 179 P-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P ++ E + + + +G ID +L+ + I + L+ Sbjct: 508 PQIVADAGLARVYAEIEIPVRDILFRMERQGVLIDGELLTRQSHEIGKRLLDLEARAHAA 567 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ + + S +++LA D L ++ Sbjct: 568 AGQPF-NVNSPKQLAEILFDKLGLPVKKKTPSGTPST-DEEVLSELALDYPLPKILLESR 625 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + V++ GR+ + + TGR + QN+P + Sbjct: 626 QLAKLKGTYTDKLPKMVNAGTGRVHTSYA-QAVAVTGRLASSDPNLQNIPVRT------- 677 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R+ IA G LV AD + IE R++A ++ + ++A Sbjct: 678 -----------------AEGRRIRAAFIAPPGSSLVSADYSQIELRIMAHLSEDARLLEA 720 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 FA GED++ T A+ F V +QR + KV+ L Y A+ Sbjct: 721 FAQGEDVHRATAAEIFGVRPVDVGPDQRRVAKVINFGLIYGMSAFGLARELDLERGAAQA 780 Query: 458 DLQQFSQNVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKD 496 ++++ + + + + LW+ + A+ Sbjct: 781 YIERYFARYPGVARYMATTREAARTQGYVETVFGRRLWLPEIRSSQAGRRQGAERAAINA 840 Query: 497 KLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + G+A +L+K A W + +L + + V + R Sbjct: 841 PMQGSAADLIKSAMIAVQGWLDAERLQTRLLMQVHDELVLEVPDDELARVRG 892 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 16/138 (11%) Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 DL G A E VA + ++ RRL +++ + Sbjct: 772 DLERGAAQAYIERYFARYPGVARYMATTREAARTQGYVETVFGRRLWLPEIRSSQAGRRQ 831 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSET 636 R +Q + D++ M +A + +++ VHDE+V E Sbjct: 832 GA---ERAAINAP------MQGSAADLIKSAMIAVQGWLDAERLQTRLLMQVHDELVLEV 882 Query: 637 PDTPYFSV-GTLCSLMTK 653 PD V G L LMT Sbjct: 883 PDDELARVRGELPRLMTD 900 >gi|219815956|gb|ACL37078.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 102/578 (17%), Positives = 201/578 (34%), Gaps = 86/578 (14%) Query: 5 FIDIETRSPQP-----LPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 +D ET S + V A +A + + P +L + + L Sbjct: 352 AVDTETTS-VDYRLARIVGVSFALQASEAFYIPIGHDYMGAPEQL----DAKFVLDTLKP 406 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLALN 117 L + + + + ++ +F I W ++LA P++ LA Sbjct: 407 ILENPAIGKIGQHMKYDAHVFNNH---GISLAGWAFDTMLASYVLNPTATRHGMDDLAQY 463 Query: 118 FSEHLTKMEE---GKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + ++ T E GK F + ++ PY A+ W+L+ + + A + Sbjct: 464 YLDYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADIT--WRLYEYFAQ----ALAK 517 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + K L + E + + + G R+D+ + +L + + L+ ++L Sbjct: 518 IPKLEKLLLEIEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELAGQPF 577 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF GI + T ++IL + +A IL + S Sbjct: 578 -NVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKIDHPIIAT--ILEYRSLSKLK 634 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++L S+ + T + TGR S QN+P + Sbjct: 635 STYTDSLIAQSDSETQRVHTSYHQAITATGRLSSTDPNLQNIPIR--------------- 679 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G +R IA G+ ++ AD + IE R++A + ++ +KAF +G DI Sbjct: 680 ---------GEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDI 730 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQ 464 + T A+ ++ V+ +QR K + L Y AK K + + + Sbjct: 731 HQATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLKLSRAEAQEYITLYFS 790 Query: 465 NVKSTSTFEDWEQAES-----------HHLWM----------QDQYPEFAVKDKLIGTAC 503 S + + +A + L+M + A+ L G+A Sbjct: 791 RYPSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAA 850 Query: 504 ELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGS 537 +++K A + Q + ++ + + V E + Sbjct: 851 DIIKLAMISVDQALPKEHAKMLLQVHDELVFEVDEDKA 888 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 14/92 (15%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 RRL +++ + + A R +Q + DI+ M + + Sbjct: 817 GRRLYMENIRAGNAMVRQAA---ERAAINAP------LQGSAADIIKLAMISVDQALPKE 867 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 ++L VHDE+V E + V L LM Sbjct: 868 HAKMLLQVHDELVFEVDEDKADEVTALLKKLM 899 >gi|260591949|ref|ZP_05857407.1| DNA polymerase type I [Prevotella veroralis F0319] gi|260536233|gb|EEX18850.1| DNA polymerase type I [Prevotella veroralis F0319] Length = 920 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 91/595 (15%), Positives = 187/595 (31%), Gaps = 116/595 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L +D ET S + A + +++ +++ +P + + L Sbjct: 348 KTLSLDTETTSTDAI----------SAELVGLSFSVEEKEAYYV------PIPENREEAL 391 Query: 62 R----------DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 + +E+++ V N ++ + G+ + + +++A P N Sbjct: 392 KRVAIFKPVYENESILKVGQNIKYDYEVLSNY-GVKLKGA--MFDTMIAHYLIQPELRHN 448 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 +E L + KG D + + EY D + T Sbjct: 449 MD---YMAETLLGYQTIHIEELLGSKGKKQKNMRDLSPTDI-------YEYAAEDADITL 498 Query: 172 ELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L P E L + + G RID + + + ++ + ++ + Sbjct: 499 RLKNVLAPKLKELNVEELFWSIEMPLVRVLADMELTGVRIDTEALKETSKIFTERMRQYE 558 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 I K + + LF I T + + S + + + R Sbjct: 559 VKIFKEAGEEF-NISSPKQVGDILFGKMQILDKPKKTKTGQYVTSEEVLQSIESKHPIVR 617 Query: 282 LASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL L + ++S G + + + TGR S QN+P + Sbjct: 618 NILNYRGMKKLLSTYVEALPKLINSRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTD 676 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R C I G AD + IE R++A ++ + Sbjct: 677 D------------------------GKEIRKCFIPEEGCMFFSADYSQIELRIMAHLSED 712 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 D ++AF G DI+ T AK ++ +D V+ QR K + Y G A+ + Sbjct: 713 DNMMEAFREGYDIHRATAAKIWHEALDDVTDAQRKKAKQANFGIIYGITTFGLAQRMEIP 772 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 + +Q + + + + S + ++ Sbjct: 773 NNEARALIQDYFRTFPKVQAYMEHAKELARSKGYAETLFHRRRYLPNINSRNGTIRGFDE 832 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 A+ + GT +++K A + + +LQ+ +L +E Sbjct: 833 RNAINAPIQGTEADIIKVAMVRIWNRFKEEGIRSKMILQVHDELNFSVYPDEREK 887 >gi|74318471|ref|YP_316211.1| DNA polymerase I [Thiobacillus denitrificans ATCC 25259] gi|74057966|gb|AAZ98406.1| DNA polymerase A [Thiobacillus denitrificans ATCC 25259] Length = 907 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 104/572 (18%), Positives = 184/572 (32%), Gaps = 104/572 (18%) Query: 5 FIDIETRSPQPLP--KVGV-WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D+E S PL +G+ +A E +A + + P +L + + Sbjct: 333 ALDVEASSASPLQCELIGLAFAVCEGEAAYLPLGHHYAGAPAQLSRAAAFARI----KPL 388 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---LN 117 L + V N + R + GI + T + + + A LA L Sbjct: 389 LEERAAKIVGQNLKYARHVLANC-GIALGGAAD-DTLLQSYVLEAHQPHELASLANRHLG 446 Query: 118 FSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + GK F + ++ + GEY + T + + Sbjct: 447 LATLACDELTGKGAARIGFDQVAV----------------ERAGEYAAEQADVTLRVRGQ 490 Query: 177 L-----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L + E + + + G +D L+ + ++ +L++ Sbjct: 491 LAARIAASEKLEYVYREIELPVSEVLFRMERAGVLLDRALLAAQSGELGRKMLELEQRAF 550 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + + + LF G+ ++ + G S + LA D + R Sbjct: 551 QEAGQPF-NLGSPKQIGDILFAQKGLPILKKTPGGAPST-DEETLELLALDHPIARAILD 608 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V GRL + A TGR + QN+P + Sbjct: 609 YRGLAKLKSTYTDKLPQMVHPLTGRLHTSYSQATAV-TGRLASVEPNLQNIPART----- 662 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G LV AD + IE R++A ++ + + Sbjct: 663 -------------------AEGRRIREAFIAPPGHLLVSADYSQIELRIMAHLSDDAGLL 703 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AFAN DI+ T A+ F P+D VS EQR I KV+ L Y A S Sbjct: 704 HAFANDLDIHTATAAEVFGVPLDAVSAEQRRIAKVINFGLIYGMSAFGLASQLNLERSAA 763 Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494 + ++ + + + + + + A+ Sbjct: 764 QAWIDRYFTRYPGVANYMLRTRESARAQGYVETVFGRRLYLPEINARNPQRRQGAERAAI 823 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + GTA +L+K A A +Q W D Sbjct: 824 NAPMQGTAADLIKLAMIA-----VQRWIDSER 850 Score = 44.0 bits (102), Expect = 0.081, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKN 654 Q + D++ M + G ++L VHDE++ E P+ V L S M Sbjct: 828 QGTAADLIKLAMIAVQRWIDSERLGTRLLLQVHDELILEVPEHELERVRAELPSHMCDV 886 >gi|238917003|ref|YP_002930520.1| DNA polymerase I [Eubacterium eligens ATCC 27750] gi|238872363|gb|ACR72073.1| DNA polymerase I [Eubacterium eligens ATCC 27750] Length = 894 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 93/526 (17%), Positives = 186/526 (35%), Gaps = 98/526 (18%) Query: 59 QYLRD--ETVMCVAHNSLFERILFKKTL---------GIDIPSKRWICTSVLARTNGLPS 107 YL D V+ VA N K L G + S++ + +A PS Sbjct: 363 SYLADRLSDVVSVASNRNIASANIKDYLDIFEKDKINGYPLVSEKAFIDTAIAAYLLHPS 422 Query: 108 -------SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS-PPYDCTRANHVQAWQLF 159 SL L+L + + GK I + + D+ Y C + + Sbjct: 423 NESYDYESLGREFLSLTYPSKTELL--GKLSINKAVNEAEDNLIKYACLSS--------Y 472 Query: 160 GEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 Y D + + + L + E L + + +G +D ++ +++ + Sbjct: 473 AYYKCADKITEQLKSENMYELFETIEMPLIFVLFEMQQQGISVDKQALVDYSKVLGTKIS 532 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 L+++I + + L + LF G+ ++ + + +LA D Sbjct: 533 VLEKEIYEAAGEEF-NINSPKQLGVILFERLGMPNGKKTKSG--YSTAADVLEKLAPDYP 589 Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + + KL + L++ +S DGR+ GT + TGR S QN+P + Sbjct: 590 VVSKILEYRQLAKLKSTYADGLTQYISEDGRIHGTFN-QTITATGRISSTEPNLQNIPIR 648 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R + +G + AD + IE R+LA ++ Sbjct: 649 ------------------------MEMGKAIRKVFVPKDGFVFLDADYSQIELRILAHMS 684 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 G++ I+A+ + DI+ T A+ F P+++V+ EQR K + + Y ++ Sbjct: 685 GDEKLIEAYNSSADIHRATAAQVFGVPLEEVTDEQRRNAKAVNFGIIYGMSSFGLSQDLS 744 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 ++++ + + TF D + +S + + Sbjct: 745 ISRKEAKEYIERYFASYPTIKTFIDGLVSDAKEKGYSLTMYNRRREIPEIKSSNFMQRSF 804 Query: 489 YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + GTA +++K A + + +LQ+ +L Sbjct: 805 GERVAMNAPIQGTAADIIKLAMINVYNALKEHNLRSRLILQVHDEL 850 Score = 44.0 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M N ++L VHDE++ ET + Sbjct: 801 QRSFGERVAMNAPIQGTAADIIKLAMINVYNALKEHNLRSRLILQVHDELLVETAEDEVD 860 Query: 643 SVGTL 647 +V + Sbjct: 861 TVKQI 865 >gi|39937781|ref|NP_950057.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] gi|39651641|emb|CAE30163.1| DNA polymerase I [Rhodopseudomonas palustris CGA009] Length = 1025 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 102/545 (18%), Positives = 175/545 (32%), Gaps = 95/545 (17%) Query: 54 PSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 P D L L+ V V F +L + G+ + + A G S Sbjct: 492 PRDALDALKPILESAGVAKVGFAIKFAAVLLAQH-GLTLRNIDDPQLMSYALDAGRGSHA 550 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 +A N L + E K D P D A Y + Sbjct: 551 LDALSESNLGHTLHTLTELTGTGK--NKIGFDQVPVDRATA-----------YAAERADV 597 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + L + L P ER L + + RG ID ++ +L AQ + Sbjct: 598 SLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAAR 657 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278 ++ +I +L I + L LF G+ ++ T S + +LA+ Sbjct: 658 IEAEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHE 715 Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 R + KL + L V T A+ TGR S QN+P + Sbjct: 716 FPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 775 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A+ G KLV AD + IE R+L+ +A Sbjct: 776 TED------------------------GRKIRRAFVATPGNKLVSADYSQIELRLLSEVA 811 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 812 DVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLS 871 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 G ++++ + + D + ++ + ++ Sbjct: 872 IPREEAGAYIKRYFERFPGIRAYMDETRDFCRNHGYVTTLFGRKCHYPDIKASNPSIRAF 931 Query: 489 YPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSI 538 A+ +L G+A +++++A + Q +LQ+ +L E Sbjct: 932 NERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLP 991 Query: 539 SARRV 543 R V Sbjct: 992 VVRAV 996 >gi|183220086|ref|YP_001838082.1| DNA polymerase I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910206|ref|YP_001961761.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774882|gb|ABZ93183.1| DNA-directed DNA polymerase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778508|gb|ABZ96806.1| DNA polymerase I (POL I) [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 942 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 97/569 (17%), Positives = 179/569 (31%), Gaps = 101/569 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-VKLWD------------RT 48 + ID ET S P+ AE L ++ +EP V + Sbjct: 365 KPISIDTETTSQDPMM-------AE-----LLGISFSEEPGVAYYIAFSHSESIYSHLLP 412 Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 L L D + N ++ ++ K I K ++LA P Sbjct: 413 SAEESLKILKPMLEDSNWKKIGQNIKYDLLVLKNY---GIELKGIYFDTMLASYLLNPGE 469 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 ++ + K + L+ K + D + EY D + Sbjct: 470 RRHNMDDMAVDYLNYKTITYEELVGT-GKKKQNLYDIDPDKV---------SEYACEDAD 519 Query: 169 ATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E + L + G +D L + K Sbjct: 520 ITLQLHNVLSPKMDENIHKKLFYEMEMPVLLTLADMEFEGIAVDKSYFESLSGTFDTKIK 579 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 + +++I + T L+ LF + ++ T S+L T Sbjct: 580 EHEKNIHFYAGRQF-NVNSTKELQTVLFEDLRLPAEKKTQTGYSTDHSVLESLQGTHPII 638 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D +L+ S +TL V+ + T + TGR S QN+P Sbjct: 639 DDLLSIRKFSKLKSTYTDTLPLLVNPKTKRIHTSYNQTIAATGRLSSTNPNLQNIP---- 694 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G +++ D + IE R++A + + Sbjct: 695 --------------------IKDEEGRLLRKGFIAKKGYEILSLDYSQIELRIMAHFSND 734 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I A+ +G DI+ T A F P D+V+ + R KV+ ++ Y G + + Sbjct: 735 PNMIDAYNSGADIHKRTAAGIFGVPEDQVTPDMRNKAKVVNFSVIYGVTSFGLSNNLRIS 794 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 ++++ K +T+ + S H + + Sbjct: 795 RKEAKEFIEKYFAAYKGVATYMEEIVEFCKQNGYVETLLGRRRYLPDIHSSHKMVSEGAK 854 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GT+ +++K A H+ + + Sbjct: 855 RVAINSPIQGTSADMIKIAMIQIHEKIKK 883 >gi|218441140|ref|YP_002379469.1| DNA polymerase I [Cyanothece sp. PCC 7424] gi|218173868|gb|ACK72601.1| DNA polymerase I [Cyanothece sp. PCC 7424] Length = 966 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 126/676 (18%), Positives = 218/676 (32%), Gaps = 145/676 (21%) Query: 7 DIETRS--PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAMP-SDLLQYL 61 D ET S P+ VG+ C + V TE +P ++L L Sbjct: 381 DTETTSLEPKDTTLVGIG----------CCWGEQPTEVAYIPLNHTEGEQLPQEEVLSAL 430 Query: 62 ----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 E V N+ F+RI+ L I + ++LA P L+ Sbjct: 431 SVILESENYPKVFQNTKFDRIVL---LNKGIKLAGVVFDTMLASYVLRPE------LSHK 481 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 S+ + E + T+ + + YC D AT L +L Sbjct: 482 LSDLCERYLENIKALNYRDLEIPK------TQTIAHLSLEKVAHYCGMDAYATFMLVPKL 535 Query: 178 IP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 I L E+ L + + + G ID + +L + + Q+ + L+ + Sbjct: 536 IAELKQAPDLYELLLKVEQPLEPVLAEMENTGVCIDTAYLNQLSQQLEQDLQILETKAYE 595 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF G++ + H+ + +L D + Sbjct: 596 AAGESF-NLGSPKQLSEILFEKLGLNKRKSRKLKTGYSTDHATLEKLQGDHPIIDYILEH 654 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L V GR+ + TGR S QN+P + Sbjct: 655 RTLAKLKSTYVDALPALVHPQTGRVHTDFN-QAVTTTGRLSSSNPNLQNIPIRT------ 707 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R I + LV AD + IE R+LA ++ E ++ Sbjct: 708 ------------------EFSRQIRKAFITQDDWLLVSADYSQIELRILAHLSQEPVLLE 749 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ N +D++ T F+ + ++ E+R+IGK + + Y GA+ F A GL Q Sbjct: 750 AYQNYQDVHRVTAQLLFDK--EVITSEERSIGKTINFGVIYGMGAQRF---ARSMGLSFQ 804 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + + HQ ++ Sbjct: 805 EGKDFIDKY--------------------------------------------HQKYARV 820 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 ++ L + +G + + RR+ L R ++ D L Sbjct: 821 FEYLERVKKEAIAKGFVTTIKG--------RRRYFEFFDDKLNHLRGEKPENLDLDKLNL 872 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSET 636 N + +QL+R +Q S DI+ M + Y ++L VHDE+V E Sbjct: 873 NYSDAQLLRAAANAP------IQGSSADIIKIAMVQLHEILQHYQARLLLQVHDELVFEI 926 Query: 637 PDTPYFSVG-TLCSLM 651 P + + + M Sbjct: 927 PPDEWEDLQVKIKDTM 942 >gi|53711382|ref|YP_097374.1| DNA polymerase I [Bacteroides fragilis YCH46] gi|52214247|dbj|BAD46840.1| DNA polymerase I [Bacteroides fragilis YCH46] Length = 935 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 92/588 (15%), Positives = 184/588 (31%), Gaps = 108/588 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59 L +D ET P+ A + +++ + + + + Sbjct: 365 LALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEP 414 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 ++E + V N ++ ++ + GI++ K + T V LA + Sbjct: 415 VFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGKLF-DTMVAHYVLQPELRHNMDYLAEIYL 472 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----- 174 + T E LI KG + Q Y D + T +L Sbjct: 473 HYQTIHIE--ELIGPKGKGQKNMRDLSP---------QEVYLYACEDADVTLKLKNILEQ 521 Query: 175 -------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++L + E L + I G R+D + + + E + ++++I L Sbjct: 522 ELKKNDAEKLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL 579 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 +G + + LF I T + + S + L + Sbjct: 580 AEGEFNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR 638 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 639 GLKKLLSTYIDALPQLINPKTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR-------- 689 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I +G AD + IE R++A ++ + I A Sbjct: 690 ----------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDA 733 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +G DI+ T AK + I +V+ + R K + Y G A+ Sbjct: 734 FLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKE 793 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + + + ++ D S + ++ A+ Sbjct: 794 LIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 853 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A ++ +LQ+ +L +E Sbjct: 854 PIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKE 901 >gi|325859715|ref|ZP_08172845.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] gi|325482641|gb|EGC85644.1| DNA-directed DNA polymerase [Prevotella denticola CRIS 18C-A] Length = 920 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 92/589 (15%), Positives = 185/589 (31%), Gaps = 112/589 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR-- 62 ID ET S + A + +++ ++ + L+Y+R Sbjct: 351 SIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANR---EEALKYIRIF 397 Query: 63 -----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLAL 116 ++ ++ + N ++ + G+ + + + +++A P +A Sbjct: 398 KPLYENDKILKIGQNIKYDYKVLNNY-GVTLQGE--MFDTMIAHYLIQPELHHNMDYMAE 454 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + T E LI K + T EY D + T L Sbjct: 455 TLLGYRTIHIE--ELIGPKGKKQKNMRDLSPTDI---------CEYAAEDADITLRLKHL 503 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + G +D + + + + K+ +++I K Sbjct: 504 LEPRLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYK 563 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + LF I T + + S + L + R + Sbjct: 564 EAGETF-NIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNY 622 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + ++ G + + + TGR S QN+P + Sbjct: 623 RGMKKLLSTYIDALPKLINPRTGHIHTSFN-QAQTATGRLSSSDPNLQNIPVRTDD---- 677 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R C I +G AD + IE R++A ++G++ ++ Sbjct: 678 --------------------GKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMME 717 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T AK ++ IDKV+ QR K + Y G A+ Sbjct: 718 AFREGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGEAR 777 Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495 +Q + + + S + ++ A+ Sbjct: 778 ELIQDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAIN 837 Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 + GT +++K A + + +LQ+ +L +E Sbjct: 838 APIQGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886 >gi|307564753|ref|ZP_07627281.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] gi|307346475|gb|EFN91784.1| DNA-directed DNA polymerase [Prevotella amnii CRIS 21A-A] Length = 945 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 92/591 (15%), Positives = 192/591 (32%), Gaps = 112/591 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQ 59 L +D ET S + QA + +++ + DR + M + Sbjct: 375 LSLDTETTSTNTM----------QAELVGLSFSIEPNKAFYIAIPSDRDKAQKMVNIFKP 424 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116 ++ ++ + N ++ + + GI+I K + +++A L ++ L Sbjct: 425 LYEEDKILKIGQNIKYDYEVLAQY-GINIKGK--MFDTMIAHYLIQPELHHNMDYMAETL 481 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + ++E LI K + T EY D + T +L+ Sbjct: 482 -LNYKTIHIDE---LIGAKGKEQKNMRNLSPTSI---------YEYACEDADITLQLYNV 528 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L+P D E L + + G +D D + + + + + + I + Sbjct: 529 LLPKLKDVNAEKLFWDIEMPLVRVLANMEMNGVCLDTDALQETSNIFTKRMQTYEAQIYE 588 Query: 227 LTDGIIRSSRQTYALRMYLFLITGI-DLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + + LF I + ++ + + + + L + R + Sbjct: 589 QAGEKF-NISSPKQVGDILFGKMQIMEKPKKTKKG-QYVTNEEVLQSLEASSPIVRNILN 646 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 I KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 647 YRGIKKLLGTYVDALPKLINKRTGRIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD--- 702 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R C I AD + IE R++A ++ ++ I Sbjct: 703 ---------------------GKEIRKCFIPEPECVFFSADYSQIELRIMAHLSKDENMI 741 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF +G DI+ T AK ++ P++ V+ QR K + Y G A+ + Sbjct: 742 EAFRSGYDIHRATAAKIWHIPMEDVTDTQRKKAKQANFGIIYGITTYGLAQRMGIPNNEA 801 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++ + F + S + ++ A+ Sbjct: 802 KKLIEDYFNTFPKVHDFMESAKELARKKGYAETIFGRRRYLNDINSKNSTVRGFAERNAI 861 Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535 + GT +++K A + + +LQ+ +L +E Sbjct: 862 NAPIQGTEADIIKVAMIRIYERFCRENIRSKMILQVHDELNFSVFPDEKER 912 Score = 41.3 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 8/118 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 A+++ + + +R+ Y++ + G YLN S+ R + + Sbjct: 800 EAKKLIEDYFNTFPKVHDFMESAKELARKKGYAETIFGRRRYLNDINSKNSTVRGFAERN 859 Query: 598 TENI-VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q DI+ M + ++L VHDE+ V + Sbjct: 860 AINAPIQGTEADIIKVAMIRIYERFCRENIRSKMILQVHDELNFSVFPDEKERVEHIV 917 >gi|265764828|ref|ZP_06093103.1| DNA polymerase I [Bacteroides sp. 2_1_16] gi|263254212|gb|EEZ25646.1| DNA polymerase I [Bacteroides sp. 2_1_16] Length = 941 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 92/588 (15%), Positives = 184/588 (31%), Gaps = 108/588 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQ 59 L +D ET P+ A + +++ + + + + Sbjct: 371 LALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAERKEAIKIVREFEP 420 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 ++E + V N ++ ++ + GI++ K + T V LA + Sbjct: 421 VFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGKLF-DTMVAHYVLQPELRHNMDYLAEIYL 478 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----- 174 + T E LI KG + Q Y D + T +L Sbjct: 479 HYQTIHIE--ELIGPKGKGQKNMRDLSP---------QEVYLYACEDADVTLKLKNILEQ 527 Query: 175 -------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++L + E L + I G R+D + + + E + ++++I L Sbjct: 528 ELKKNDAEKLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL 585 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 +G + + LF I T + + S + L + Sbjct: 586 AEGEFNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR 644 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 645 GLKKLLSTYIDALPQLINPKTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR-------- 695 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I +G AD + IE R++A ++ + I A Sbjct: 696 ----------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDA 739 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +G DI+ T AK + I +V+ + R K + Y G A+ Sbjct: 740 FLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKE 799 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + + + ++ D S + ++ A+ Sbjct: 800 LIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 859 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A ++ +LQ+ +L +E Sbjct: 860 PIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKE 907 >gi|78063065|ref|YP_372973.1| DNA polymerase I [Burkholderia sp. 383] gi|77970950|gb|ABB12329.1| DNA polymerase A [Burkholderia sp. 383] Length = 917 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 111/609 (18%), Positives = 194/609 (31%), Gaps = 121/609 (19%) Query: 7 DIETRSPQPL--PKVGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60 D ET S P+ VG+ E A A+ P D EQ + L + Sbjct: 345 DTETTSLDPMLARLVGLSFSVESGKAAYLPVAHR---GP----DMPEQLPLDEVLARLKP 397 Query: 61 -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNACLALN- 117 L V + ++ + DI T + + + LAL Sbjct: 398 WLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESYVVESHRTHDMDSLALRH 454 Query: 118 FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 K E+ GK F + ++ T +L Sbjct: 455 LGVKTIKYEDVAGKGAKQIGFDEVALTQAAEYAAEDAD----------------ITLQLH 498 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L P + E + L+ + + G ID + IA +L+ Sbjct: 499 HALYPQVAREPGLLHVYREIEMPVSLVLRKMERTGVLIDDVRLQAQSTEIATRLIELEAQ 558 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 +L G + + F + +V + S + +LA+D L +L Sbjct: 559 AYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLL 616 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L V+ GR+ + TGR + QN+P + Sbjct: 617 LEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT--- 672 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IAS G ++V AD + IE R++A I+G+ Sbjct: 673 ---------------------AEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDAS 711 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 712 LLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLIYGMSAFGLASNLGITRD 771 Query: 454 HCGLDLQQFSQNVKSTSTFED-----------WEQAESHHLWM----------QDQYPEF 492 L + ++ + + + E LW+ + Sbjct: 772 AAKLYIDRYFARYPGVAQYMEDTRSVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERA 831 Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWK----DLTEGFACVVQEGGSI 538 A+ + GTA +L+K + A + ++Q+ ++ +G +V+E Sbjct: 832 AINAPMQGTAADLIKLSMIAVDDWLTRDKLASRMIMQVHDELVLEVPDGELSLVREKLPE 891 Query: 539 SARRVANVP 547 VA + Sbjct: 892 MMCGVAKLK 900 >gi|60679700|ref|YP_209844.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|253564511|ref|ZP_04841968.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|60491134|emb|CAH05882.1| putative DNA polymerase I [Bacteroides fragilis NCTC 9343] gi|251948287|gb|EES88569.1| DNA polymerase I [Bacteroides sp. 3_2_5] gi|301161164|emb|CBW20702.1| putative DNA polymerase I [Bacteroides fragilis 638R] Length = 941 Score = 256 bits (653), Expect = 1e-65, Method: Composition-based stats. Identities = 92/588 (15%), Positives = 184/588 (31%), Gaps = 108/588 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQ 59 L +D ET P+ A + +++ + + + + Sbjct: 371 LALDTETTGTDPM----------DAELVGMSFSITENQAFYVPVPAEREEAIKIVREFEP 420 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 ++E + V N ++ ++ + GI++ K + T V LA + Sbjct: 421 VFKNEKSLKVGQNIKYDMLVLQNY-GIEVRGKLF-DTMVAHYVLQPELRHNMDYLAEIYL 478 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----- 174 + T E LI KG + Q Y D + T +L Sbjct: 479 HYQTIHIE--ELIGPKGKGQKNMRDLSP---------QEVYLYACEDADVTLKLKNILEQ 527 Query: 175 -------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++L + E L + I G R+D + + + E + ++++I L Sbjct: 528 ELKKNDAEKLF--YEIEMPLVPVLVNIESNGVRLDTEALKQSSEHFTTRLQSIEKEIYTL 585 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 +G + + LF I T + + S + L + Sbjct: 586 AEGEFNIA-SPKQVGEILFDKLKIVEKAKKTKTGQYVTSEEVLESLRNKHDIIGKILEYR 644 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 645 GLKKLLSTYIDALPQLINPKTGRIHTSFN-QTVTATGRLSSSNPNLQNIPIR-------- 695 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I +G AD + IE R++A ++ + I A Sbjct: 696 ----------------DEDGKEIRKAFIPDDGCSFFSADYSQIELRIMAHLSEDKNMIDA 739 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +G DI+ T AK + I +V+ + R K + Y G A+ Sbjct: 740 FLSGYDIHAATAAKIYKVDIKEVTADMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKE 799 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + + + ++ D S + ++ A+ Sbjct: 800 LIDGYFETYPQVKSYMDKSIQVAREHGYVETIFHRKRFLPDINSRNAVVRGYAERNAINA 859 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+A +++K A ++ +LQ+ +L +E Sbjct: 860 PIQGSAADIIKVAMARIYERFKAEGLKAKMILQVHDELNFSVPAKEKE 907 >gi|298372616|ref|ZP_06982606.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] gi|298275520|gb|EFI17071.1| DNA polymerase type I [Bacteroidetes oral taxon 274 str. F0058] Length = 949 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 88/566 (15%), Positives = 174/566 (30%), Gaps = 107/566 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW------DRTEQSAMPSDLLQY 60 D ET S + + ++ EP K + D+ + + Sbjct: 377 DTETTS------------LDTFEAQIVGLSFAVEPQKAYYVALPDDKQKTEEILRRFAPL 424 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALN 117 L D ++ N ++ + I + +++A P ++ Sbjct: 425 LEDASIEKTGQNMKYDISVLGNY---GIGVGGRMFDTMIAHYLLQPELRHNMDYMAEVF- 480 Query: 118 FSEHLTKMEEGKALIARFC--KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174 E F K P + R + +Y D + T +L Sbjct: 481 LGYRTIHFGE------LFDDDKTKKSGKPIEDIRKVELGK---LKDYACEDADITLQLKN 531 Query: 175 -----------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 K L D E L + + G ID + E + +E +K++ D Sbjct: 532 IFGQKLCESSLKNLF--FDIEMPLVPILAKMESNGVLIDDFALASYAETLKRELQKIERD 589 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I+ D I + + LF I T + + +L + +L Sbjct: 590 ILAYVDLPI-NISSPKQIGELLFERLRIVEKPTKTKTGQYRTDEETLQKLRNRHPIIKLI 648 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL L + ++ ++ + TGR S QN+P Sbjct: 649 LEHRGLKKLLSTYVEALPKLINPKTNKIHTSFN-QTVVSTGRLSSSNPNLQNIP------ 701 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA G L+ AD + +E R++A ++G+ Sbjct: 702 ------------------VRDDYGREIRKAFIAEPGCVLLSADYSQVELRIMAHLSGDRN 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 + AFA+G+DI+ T A+ F PI++V+ + R K + Y G ++ Sbjct: 744 MLSAFASGQDIHAATAARIFKVPIEEVTSDMRRKAKTANFGIIYGISAFGLSERLDIPRK 803 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492 + + ++ + + E+ + ++ Sbjct: 804 EAAALIDGYFESFPDVKRYMEQAIEEARRNGSVQTLFGRKLYLPDINSQNAGVRGFAERI 863 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVL 518 A+ + GTA +++K A + + Sbjct: 864 AINAPIQGTAADIIKIAMIKVDEAIR 889 >gi|288801790|ref|ZP_06407232.1| DNA polymerase type I [Prevotella melaninogenica D18] gi|288335832|gb|EFC74265.1| DNA polymerase type I [Prevotella melaninogenica D18] Length = 920 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 91/585 (15%), Positives = 188/585 (32%), Gaps = 104/585 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYL 61 ID ET S + A + +++ +++ V + E++ + + L Sbjct: 351 SIDTETTSTDAI----------SAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPL 400 Query: 62 -RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + +M + N ++ + + G+ + K + +++A P N +E Sbjct: 401 YESDKIMKIGQNIKYDYEVLTRY-GVTLQGK--MFDTMIAHYLIQPELHHNMD---YMAE 454 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L + KG D + + EY D + T L L P Sbjct: 455 TLLSYQTIHIEELLGPKGKKQKNMRDLSPTDI-------YEYAAEDADITLRLKNVLEPR 507 Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + E L + + G +D + + ++ + K+ +++I K Sbjct: 508 LKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEAGE 567 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + LF I T + + S + L + R + + Sbjct: 568 EF-NISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILNYRGMK 626 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ G + + + TGR S QN+P + Sbjct: 627 KLLSTYIDALPKLINPRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD-------- 677 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R C I G AD + IE R++A ++ ++ ++AF Sbjct: 678 ----------------GKEIRKCFIPEEGCLFFSADYSQIELRIMAHLSEDENMMEAFRE 721 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G DI+ T AK ++ IDKV+ QR K + Y G A+ ++ Sbjct: 722 GHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIE 781 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + + + + S + ++ A+ + Sbjct: 782 GYFRTFPKVQAYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQ 841 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 GT +++K A + + +LQ+ +L +E Sbjct: 842 GTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEERE 886 >gi|221212339|ref|ZP_03585316.1| DNA polymerase I [Burkholderia multivorans CGD1] gi|221167438|gb|EED99907.1| DNA polymerase I [Burkholderia multivorans CGD1] Length = 920 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 94/541 (17%), Positives = 172/541 (31%), Gaps = 110/541 (20%) Query: 49 EQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 MP L +L V + ++ + GI++ T + Sbjct: 381 RGPDMPEQLPLDDVLARLKSWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLE 438 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQA 155 + + LAL K E+ GK F + ++ Sbjct: 439 SYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD--- 495 Query: 156 WQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLD 204 T +L + L P + E + L+ + + G ID Sbjct: 496 -------------ITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDA 542 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + IA L+ L G + + F + +V + S Sbjct: 543 RLQAQSNEIATRLVDLEAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST 601 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTG 318 + +LA+D L +L + KL + L V+ GR+ + TG Sbjct: 602 -DEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYA-QAVAVTG 659 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R + QN+P + +R IA+ G ++V Sbjct: 660 RLASNDPNLQNIPVRT------------------------AEGRRIREAFIAAPGHRIVS 695 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F +V+ +QR I KV+ Sbjct: 696 ADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFG 755 Query: 439 LGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHL 483 L Y A L + ++ + + + +A + L Sbjct: 756 LIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRL 815 Query: 484 WM----------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKD 523 W+ + A+ + GTA +L+K + A + ++Q+ + Sbjct: 816 WLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDE 875 Query: 524 L 524 L Sbjct: 876 L 876 >gi|312129432|ref|YP_003996772.1| DNA polymerase i [Leadbetterella byssophila DSM 17132] gi|311905978|gb|ADQ16419.1| DNA polymerase I [Leadbetterella byssophila DSM 17132] Length = 933 Score = 255 bits (652), Expect = 1e-65, Method: Composition-based stats. Identities = 89/521 (17%), Positives = 166/521 (31%), Gaps = 92/521 (17%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 + +E + VA N ++ + G+++ + T + LA Sbjct: 409 EFKPLFENENIRKVAQNIKYDLTILATY-GVEVKGE-IYDTMLAHYILEPDQRHGMDYLA 466 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + K LI KG D + EY D + T +L Sbjct: 467 ETYLSY--KPIPISDLIG---KGKKQLNMRDV-------PLEQIKEYAAEDADITLQLKH 514 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L L + E L + + G +ID++ + L + ++ K EDI Sbjct: 515 VLDAQIKKTDQGRLLQEVELPLVHVLSDMERTGVKIDVEALHDLSNTLQKDLAKTQEDIF 574 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + L LF ID T + + D + R Sbjct: 575 QLAGMEF-NVGSPKQLGEILFEHMKIDEKPKKTPTGQYATGEDILVNYEADHEIVRKILD 633 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L +S GR+ T + TGR S QN+P + Sbjct: 634 FRELSKLKSTYVDALPTLISKRTGRIHTTYN-QAVAATGRLSSTNPNLQNIPIRTER--- 689 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R I ++ AD + IE R++A +G++ Sbjct: 690 ---------------------GREIRKAFIPGGEEFTILSADYSQIELRIMADFSGDESM 728 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 ++AF NG DI+ T +K F +++V+ + R K++ + Y G A+ Sbjct: 729 LEAFDNGMDIHAATASKVFGVSLEEVNSDMRRKAKMVNFGIIYGISAFGLAQRLGIPRGE 788 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFA 493 + + ++ D ++ L + A Sbjct: 789 AKNIIDAYFTQFPKVKSYMDQTIEKARELEYVETILGRRRYLRDINSRNQTNRGFAERNA 848 Query: 494 VKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + + G+A +++K A H + +LQ+ +L Sbjct: 849 INAPIQGSAADMIKVAMIQIHDFMKKENLKSKMILQVHDEL 889 >gi|330427661|gb|AEC18995.1| DNA polymerase I [Pusillimonas sp. T7-7] Length = 860 Score = 255 bits (652), Expect = 2e-65, Method: Composition-based stats. Identities = 106/566 (18%), Positives = 182/566 (32%), Gaps = 96/566 (16%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQ--AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S P+ VG+ E A A+ P +Q + L + Sbjct: 288 ALDTETTSLDPMQARLVGLSMSVEAGVACYIPVAHR---GPDHAPQLPKQEVL-DRLRPW 343 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D + HN+ ++ + G+ + T + A + LA + Sbjct: 344 LEDSKAHKLLHNAKYDTHVL-MNEGVALAGVA-EDTMLQAYVLESHKRVNMQELAERWLG 401 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + E C +D + + D + T +L + L P Sbjct: 402 RIGTTYED------LCGKGAKQIGFDEIDVDKASHY------ACEDADFTLQLHQVLRPK 449 Query: 181 SDGERDLWLLDQ----------TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + L + Q I G ID L+ + Q+ + + +L Sbjct: 450 VLADPGLENIYQLEVQASATLAIIERNGVAIDGKLLAAQSHELGQKLLEFEAKAYELAGQ 509 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + +V + S +T+LA D L L + Sbjct: 510 PF-NLNSPKQLGEILFQRMQLPIVRKTPSGAPST-DEDVLTKLAHDYPLPALLLEYRGLA 567 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ GR+ A TGR + QN+P + Sbjct: 568 KLKSTYTDKLPKMINPRTGRVHTRYA-QAAVITGRLASSDPNLQNIPVRT---------- 616 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR+ +AS G ++V AD + IE RV+A ++ ++ +AF Sbjct: 617 --------------PEGRRVRAAFVASGG-QIVSADYSQIELRVMAHVSDDENLRQAFER 661 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G+DI+ T A+ F +VS EQR K + L Y G A + Sbjct: 662 GDDIHQATAAEVFGAAQAEVSAEQRRAAKAINFGLIYGMGEFGLASNLGITRDAARAYID 721 Query: 461 QFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFA----------VKDKLI 499 ++ + + + E LW+ D + + Sbjct: 722 RYFARYPGVAAYMEQTKRMANELGYVETVFGRRLWLPDLRGAKGPRRAAAERAAINAPMQ 781 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLT 525 GTA +L+K A A +Q W + Sbjct: 782 GTAADLIKMAMVA-----VQDWLEAE 802 >gi|126663071|ref|ZP_01734069.1| DNA polymerase I [Flavobacteria bacterium BAL38] gi|126624729|gb|EAZ95419.1| DNA polymerase I [Flavobacteria bacterium BAL38] Length = 950 Score = 255 bits (652), Expect = 2e-65, Method: Composition-based stats. Identities = 92/521 (17%), Positives = 174/521 (33%), Gaps = 84/521 (16%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-G 104 D+ E + + +E + + N ++ + ++ K + +++A Sbjct: 414 DQEEAQTLIEKFRPFFENENIEKIGQNMKYDLKILSNY---NMQVKGKLFDTMIAHYLIN 470 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L+ + ++ K E LI + KG D + EY Sbjct: 471 PDMRHNMDVLSETYLKYAPKSIE--TLIGK--KGKNQLSMRDVPLEDI-------KEYAT 519 Query: 165 RDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T +L + P+ + E L + + G R+D++ + + + Sbjct: 520 EDADITFQLKEHFQPILEKVGTKKLFDEIEIPLVPVLADMEKEGIRLDVEFLKNMSVDMQ 579 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQL 273 +E ++ I + + L LF I + T + ++ L Sbjct: 580 KEIDAFEQQIYETAGEKFNLA-SPKQLGDILFDKLKIGGAKQKKTKTGQYATGEEVLSYL 638 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 A + + R ++KL + L V GR+ + TGR S Sbjct: 639 ANEHQIVRDILEWRQMVKLQSTYIDALPNQVDKKTGRVHTDY-MQTVAATGRLSSTNPNL 697 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386 QN+P + +R IA L+ AD + IE Sbjct: 698 QNIPIRTEK------------------------GRLIRKAFIARDENYTLLSADYSQIEL 733 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R++A + GE+ IKAF N EDI+ +T AK FN P+D+V+KEQR+ K + + Y Sbjct: 734 RIIAALCGEENMIKAFQNHEDIHKSTAAKVFNIPLDEVTKEQRSHAKTVNFGIIYGVSAF 793 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------------- 488 G + ++ + Q +F + + + Sbjct: 794 GLSNQTNLSRKESAELIEAYYQTYPKLKSFMTSQVDFARENGYVETISGRRRYLKDINSA 853 Query: 489 -------YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 AV + G+A +++K A H+ + Sbjct: 854 NAIVRGGAERNAVNAPIQGSAADIIKIAMINIHKKLTSENW 894 >gi|300775482|ref|ZP_07085343.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] gi|300505509|gb|EFK36646.1| DNA-directed DNA polymerase I [Chryseobacterium gleum ATCC 35910] Length = 944 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 101/555 (18%), Positives = 187/555 (33%), Gaps = 96/555 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLR 62 D ET S L +A + ++++ DR E + Sbjct: 377 DTETTSLNEL----------EAELVGMSFSYKKGLAYYIPLSEDRAEVLQTLEIFRPFFE 426 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121 E ++ VAHN F+ + K+ DI K + +++A L+ + + Sbjct: 427 KEDLLKVAHNLKFDYKVLKQY---DITVKGAMFDTMIAHYLLNPDGRHGMDYLSEVYLNY 483 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 K + +I + KG D Y D + T +L++ P Sbjct: 484 --KPVSIETIIGK--KGKKQGNFRDADLRTQTD-------YAAEDADVTFQLYELFAPQL 532 Query: 182 ----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E L + + G +D + + + + K L+ I +L+ Sbjct: 533 KKENLEELFYNIEMPLMEVLAKMELSGISLDEKWLAQESVDLENDLKGLEAKIFELSGEE 592 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF +D T + S + +L+ + + K Sbjct: 593 F-NMNSPRQLGEILFEKMQLDPKAKKTKTGQYATSEDVLQKLSSKHEIIKHILEYRTYQK 651 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + D R+ A+ TGR + QN+P + Sbjct: 652 LKSTYVDALPSQIDKDDNRVHTNFSQTTAA-TGRLASVNPNLQNIPIRTLR--------- 701 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R ++ GKK++ AD + IE R++A I+GE+ IKAF +G Sbjct: 702 ---------------GQQIRGAFVSGEGKKIISADYSQIELRLIAEISGEENMIKAFQDG 746 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCGLDLQQ 461 EDI+ +T AK F P+ +VSK QR+ K + + Y GA + ++ Sbjct: 747 EDIHASTAAKLFKIPLAEVSKTQRSQAKTVNFGIIYGQGAFALAEQTGLSRTEAKQMIEA 806 Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500 + + + + ++ L ++ AV + G Sbjct: 807 YFETYPKLKEYMAEQVNKARQLGYVETILGRKRHLKDINSNNFVVRGHAERNAVNAPVQG 866 Query: 501 TACELVKKAWRAKHQ 515 +A ++VK A + Sbjct: 867 SAADIVKIAMIKIDR 881 >gi|323343700|ref|ZP_08083927.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] gi|323095519|gb|EFZ38093.1| DNA-directed DNA polymerase I [Prevotella oralis ATCC 33269] Length = 920 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 94/590 (15%), Positives = 189/590 (32%), Gaps = 110/590 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR- 62 L +D ET S P+ A + ++A +++ ++ + Sbjct: 350 LSLDTETTSTNPI----------DAELVGLSFAVEEKKAFYVPIPSNRQEAQKIVNIFKP 399 Query: 63 ---DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLAL 116 + ++ V N ++ + G+ + K + ++LA P ++ L Sbjct: 400 IYENPDILKVGQNLKYDLEVLHNY-GVTLKGK--MFDTMLAHYVIQPELRHNMDYMAETL 456 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + ++E LI K D EY D + T +L Sbjct: 457 -LNYRTIHIDE---LIGPRGKNQKSMRELDPKEV---------YEYAAEDADITLQLKNV 503 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L + I G ID D + + ++ + + + +I + Sbjct: 504 LETKLKEMECEDLFWNIEMPLMPVLAEIEMNGVVIDTDSLRETSAILTKRMQDYEHEIYQ 563 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + + LF I T + + S + QL + Sbjct: 564 LAGEEF-NISSPKQVGDILFGKMKIVEKPKKTKTGQFVTSEEVLQQLENKSPIVAKILEY 622 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + ++ G + + + TGR S QN+P Sbjct: 623 RGLKKLLGTYVDALPKLINPRTGHIHTSFN-QAITATGRLSSSDPNLQNIP--------- 672 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G +R C I G AD + IE RV+A ++ + I+ Sbjct: 673 ---------------VRGEDGKEIRKCFIPEPGCLFFSADYSQIELRVMAHLSSDKNMIE 717 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +G DI+ T AK + PI++V++++R K + Y G A+ Sbjct: 718 AFMHGYDIHAATAAKIYKKPIEEVTRDERNKAKRANFGIIYGITTYGLAQRLDIDNREAK 777 Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVK 495 ++ + + + + +A++ H+ ++ A+ Sbjct: 778 ELIEGYFETFPQVYEYMERAKADARAKGYAETLFHRRRYLPDINSHNATVRGYAERNAIN 837 Query: 496 DKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 + G+A +++K A +LQ+ +L +E Sbjct: 838 APIQGSAADIIKVAMIRISDRFKRENIHSKLILQVHDELNFSVYPDEKEK 887 >gi|146337867|ref|YP_001202915.1| DNA polymerase I [Bradyrhizobium sp. ORS278] gi|146190673|emb|CAL74677.1| DNA polymerase I (POL I) [Bradyrhizobium sp. ORS278] Length = 1034 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 100/511 (19%), Positives = 179/511 (35%), Gaps = 73/511 (14%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D+ ++S + L L ++ + +N F +L + GI + + I A G Sbjct: 497 DQIKESEALAALKPVLESTGLLKIGYNIKFLAVLLAQH-GITLQNVDDILLMSYALDAGR 555 Query: 106 PS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLF 159 S SL LA + GK + F + +ID A V + W++ Sbjct: 556 GSHKLDSLAEHVLAHAIISEGELIGSGKNKLT-FEQVAIDRATAHAAEAADVIHRVWRVL 614 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 E +++ L ER L + + RG ID ++ +L AQ + Sbjct: 615 KPRLT--AERMTAVYETL------ERPLVSVLARMERRGISIDRQVLSRLSGDFAQTAAR 666 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK---- 275 ++ ++ +L I + + LF G+ ++ T S S + LA+ Sbjct: 667 VEAELQELAGEPI-NVGSPKQIGDILFGKMGLSGGTRTK-TGAWSTSASILDDLAEQGND 724 Query: 276 --DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 IL S + L V+ T A+ TGR S QN+P + Sbjct: 725 FARKILEWRQVSKLKSTYTDALPTYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 784 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA+ G KLV AD + IE R+LA IA Sbjct: 785 TED------------------------GRKIRRAFIATPGYKLVSADYSQIELRLLAEIA 820 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 +AF +G DI+ T ++ F PI + E R K + + Y G A Sbjct: 821 DIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLANQLG 880 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 ++++ + + D + + ++ + ++ Sbjct: 881 IAREEASAYIKRYFERFPGIRAYMDETREFCRKNGYVVTLFGRKCHYPEIKASNASVRAF 940 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ +L GTA +++++A + + Q Sbjct: 941 NERAAINARLQGTAADIIRRAMTRVEEALAQ 971 >gi|309791689|ref|ZP_07686181.1| DNA polymerase I [Oscillochloris trichoides DG6] gi|308226311|gb|EFO80047.1| DNA polymerase I [Oscillochloris trichoides DG6] Length = 951 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 115/636 (18%), Positives = 207/636 (32%), Gaps = 166/636 (26%) Query: 56 DLLQYL----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLK 110 +++ L D AHN+ F+ + LG+ I + T + A G + LK Sbjct: 410 EVVAALGPFFADPNKAKYAHNAKFDIEML---LGVGIEVQGLAFDTMIAAALLGKRAGLK 466 Query: 111 NACLALNFSEHLTKMEEGKALIAR------FCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + LA + M + LI R F + I + Y Sbjct: 467 D--LAFYELQLPDPMTPIEDLIGRGTKQISFAQVPI----------------ERATPYAA 508 Query: 165 RDVEATRELFKRLIPLS-----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 D + T L L P E L + + G +D + L + + Sbjct: 509 ADADMTLRLVHALEPQLATTPKLHDLYRRLELPLVHVLVQMEQAGIALDKPYIEYLGQRM 568 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI--DLVDMSEGTLKSILSHSNIT 271 ++++I ++ +G + + L LF G+ + V+ + T K ++ + Sbjct: 569 GTRIAAIEQEIYQIAEGPF-NINSSDQLSDILFGKIGLSTEGVERTAKTKKYSITADTLE 627 Query: 272 QLAK-------DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 +L + + IL S ++ L V+ GR+ T GA+ TGR S Sbjct: 628 RLRERDTSGICERILEYRRLSKLKSTYVDALPALVNPRTGRVHTTYNQVGAA-TGRLSSN 686 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R +A+ G + + AD + Sbjct: 687 DPNLQNIPVRT------------------------QEGREIRRGFVAAPGHRFIAADYSQ 722 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE RVLA+I + ++AF G+DI+ T A+ F ID+V KEQR I K + + Y Sbjct: 723 IELRVLAYITKDPNLVRAFQEGQDIHAATAAQLFGVAIDQVDKEQRRIAKTVVFGVIY-- 780 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 G F A + ++ + Sbjct: 781 GISAFG------------------------------------------LAQRTEMGRSEA 798 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + + G+ ++ + V + + R + + Sbjct: 799 QDLINSLFTRFPGIRDY-------------INRTLEQGQTTGVVQTIFGRQRAMPELQSR 845 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATK 619 RR RE +Q + DI+ M + ++ Sbjct: 846 GPRRAAA-----------------EREAINAP------IQGTAADIMKIAMIKMARALSE 882 Query: 620 NGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652 G ++L VHDE++ E P+ V L +M Sbjct: 883 RGLRTRLLLQVHDELILEAPEEEVALVAELVREVMA 918 >gi|219815948|gb|ACL37073.1| DNA polymerase I [uncultured bacterium] Length = 944 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 100/574 (17%), Positives = 192/574 (33%), Gaps = 103/574 (17%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S L + + YA +A P D+ + A+ + L Sbjct: 374 DTETTSLVAIEAELVGLALSYYAGEAYYVPF-------PA---DKAQTQAILEEFRGVLE 423 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 E + + N ++ + KK I+I + + T + + + +A + + Sbjct: 424 SENIKKIGQNLKYDITVLKKY-NIEIKGECF-DTMLASYLLDPDNRHSMDAMAEKYLNY- 480 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 + ++ + + K + D Q EY D + T +L + P Sbjct: 481 SPVKIDTLIGKKSTKNTTQGNMRDVEV-------QKVVEYAGEDADITLQLKEYFAPKVA 533 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E L + I G RID + + E++ ++ K L++ I L+ + Sbjct: 534 ERPILEKLFKTVEMPLMHVLAHIEATGVRIDTQALAESSEILDKDIKILEQTIYTLSGEV 593 Query: 232 IRSSRQTYALRMYLFLITGI-----DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF + T + +L+ ++ + ++ R Sbjct: 594 FNIA-SPQQLGKVLFEKLNLMKNPPKTKTGQYATGEEVLTKLTDNEIVQQILEIR-ELQK 651 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L VS DGRL + TGR S QN+P + Sbjct: 652 LKSTYVDALPALVSKIDGRLHTSYN-QAVVATGRLSSTNPNLQNIPIKTAK--------- 701 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I ++ ++ AD + IE R++A + ++ ++AF N Sbjct: 702 ---------------GREIRKAFIPTDDDFVILSADYSQIELRLIAAFSQDETMMEAFNN 746 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460 G DI+ T +K + I +V+ + R + K A+ Y A K S + Sbjct: 747 GTDIHTATASKIYKIDIQEVTADMRRMAKTANFAILYGSSAFNLSAQLKISTSEAKKLID 806 Query: 461 QFSQNVKSTSTFEDWEQAESHHL--------------------WMQDQYPEFAVKDKLIG 500 + + F+D ++ + Q AV + G Sbjct: 807 SYYGEFSAVKKFKDEMIQKARQFEYAETFLGRRRYLAGINGGAMVSGQAERNAVNSPIQG 866 Query: 501 TACELVKKAWRAKH----------QGVLQLWKDL 524 TA +++K A H + +LQ+ +L Sbjct: 867 TAADMIKLAMIDIHRFMMREKMQSKMILQVHDEL 900 >gi|83594843|ref|YP_428595.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] gi|83577757|gb|ABC24308.1| DNA polymerase A [Rhodospirillum rubrum ATCC 11170] Length = 924 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 84/494 (17%), Positives = 152/494 (30%), Gaps = 69/494 (13%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 RD V+ V HN F+ + D+ L + L+ Sbjct: 398 RDPGVLKVGHNLKFDLHVLANAGLSDVAPVDDTMVLSYVLDGTLHGHGMDELAGLHLGRR 457 Query: 122 LTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 EE GK I F + +D V + E + + L Sbjct: 458 TITFEEVCGKGKGQIT-FDQVPLDKAVAYAAEDADVTLRLYLLLRDRLLKEHMVRVHETL 516 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 +R + + + G R+D + L A+ L++ I L + Sbjct: 517 ------DRPMVRILTDMEAAGVRVDALRLKALSGDFAKRMGDLEDQIHALAGHAF-NVAS 569 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILK 291 L LF + S T + QLA + +L+ + Sbjct: 570 PKQLGEVLFEEMSLTGGKKSRKTGAWSTDAQVLDQLAAEGHDLPARVLDWRQYAKLKGTY 629 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + GR+ T + TGR S QN+P + + Sbjct: 630 TDALVAEIDERTGRVHTTYGL-TVTATGRLSSNDPNLQNIPVRSEA-------------- 674 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R IA+ G L+ AD + IE R++A +AG +AFA G+DI+ Sbjct: 675 ----------GRKIREAFIAAPGHLLISADYSQIELRLVAHVAGITALRQAFAEGKDIHA 724 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 T ++ F P++ + R K + + Y G A+ + + Sbjct: 725 ITASQVFGVPVEGMDPMVRRQAKAINFGIIYGISAHGLAQQLGVGRPEAAAFITAYFARF 784 Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505 ++ + + E+ + + A+ + G A ++ Sbjct: 785 PEIRSYMETVKEEARTVGWVATPFGRRIPIPGIQDKNPAARAFAERQAINAPIQGGAADI 844 Query: 506 VKKAWRAKHQGVLQ 519 +K+A A + Q Sbjct: 845 IKRAMIALPPALEQ 858 >gi|270295031|ref|ZP_06201232.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270274278|gb|EFA20139.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 951 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 95/584 (16%), Positives = 183/584 (31%), Gaps = 100/584 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +P+ V A AY PV +R E + ++ + Sbjct: 381 LSIDTETTGTEPMDAELVGMSFSDAENR--AYYV---PVP-AEREEVLKIVNEFRPLFEN 434 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLALNFSEH 121 E M V N ++ I+ + G+ + K + ++LA P + + Sbjct: 435 EKSMKVGQNIKYDMIILQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAEIYLHYQ 491 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 ++E + K D PP D Y D + T +L L Sbjct: 492 TIHIDELIGARGKNQKNMRDLPPEDV------------YRYACEDADVTLKLKNVLEKEL 539 Query: 182 ----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E L + I G +D + + + + ++++++I ++ Sbjct: 540 KEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGET 599 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + LF I T + + S + + + K Sbjct: 600 F-NISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKK 658 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + ++ GR+ + + TGR S QN+P + Sbjct: 659 LLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR------------ 705 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I G + AD + IE R++A ++ + I AF +G Sbjct: 706 ------------DEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSG 753 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T AK + I+ V+ + R K + Y G A+ + Sbjct: 754 HDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQEAKELIDG 813 Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500 + + + D S + ++ A+ + G Sbjct: 814 YFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAERNAINAPIQG 873 Query: 501 TACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 +A +++K A +Q +LQ+ +L +E Sbjct: 874 SAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKE 917 >gi|167753813|ref|ZP_02425940.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] gi|167658438|gb|EDS02568.1| hypothetical protein ALIPUT_02098 [Alistipes putredinis DSM 17216] Length = 959 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 86/531 (16%), Positives = 166/531 (31%), Gaps = 91/531 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + D + + N F+ ++ + LG++I + + T +L S LA+ Sbjct: 435 IRPLFADGKIAKIGQNIKFDLMVLAR-LGVEIRGRLY-DTMILHYLLDPESRHNMDALAM 492 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + +LI + + + + EY D + T L + Sbjct: 493 RYLNYRPI--SITSLIGK----------GARQLTMDMISLERVAEYAAEDADVTLRLKQV 540 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E + + I G RID + + + + + L+ DI + Sbjct: 541 LWPKVEELDLAGLYLEIEEPMIAVLAEIEMAGVRIDSEALAEYAVELNKTLNDLEGDIRR 600 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L D + L LF I T + + A + Sbjct: 601 LADEPSLNVNSARQLGEVLFGKLRIAEKPKMTKTKQFSTEEEYLQTFAHKYEIVDKILEY 660 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL L V+ G++ + + TGR S QN+P Sbjct: 661 RGVKKLLSTYVEALPLLVNPVTGKIHTSFN-QAVTATGRLSSTNPNLQNIP--------- 710 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399 +R I S+ L+ AD + +E R++A ++G++ I Sbjct: 711 ---------------VRDELGRRIRKAFIPSDDEHLLLSADYSQVELRLMAHLSGDESLI 755 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF +GED++ T A+ F + +V ++R K + Y G ++ Sbjct: 756 AAFEHGEDVHAATAARLFGKEVAEVDSDERRKAKTANFGIIYGISAFGLSQRLDIPRKEA 815 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAV 494 ++ + + + D E+ AV Sbjct: 816 KEIIEGYFASYPKVKEYMDRVVEEAKRDGYVSTIFGRRRYLNDIASRNAVARGLAERNAV 875 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 + G+A +++K A + +LQ+ +L QE Sbjct: 876 NAPIQGSAADIMKIAMIRVSRRFREEGIRSKVILQVHDELVVDMLRSEQER 926 >gi|192293562|ref|YP_001994167.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] gi|192287311|gb|ACF03692.1| DNA polymerase I [Rhodopseudomonas palustris TIE-1] Length = 1025 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 102/545 (18%), Positives = 175/545 (32%), Gaps = 95/545 (17%) Query: 54 PSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 P D L L+ V V F +L + G+ + + A G S Sbjct: 492 PRDALDALKPILESAGVAKVGFAIKFAAVLLAQH-GLTLRNIDDPQLMSYALDAGRGSHA 550 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 +A N L + E K D P D A Y + Sbjct: 551 LDALSESNLGHTLHTLTELTGTGK--NKIGFDQVPVDRATA-----------YAAERADV 597 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + L + L P ER L + + RG ID ++ +L AQ + Sbjct: 598 SLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFAQTAAR 657 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278 ++ +I +L I + L LF G+ ++ T S + +LA+ Sbjct: 658 IEAEIRELAGEDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHE 715 Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 R + KL + L V T A+ TGR S QN+P + Sbjct: 716 FPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVR 775 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A+ G KLV AD + IE R+L+ +A Sbjct: 776 TED------------------------GRKIRRAFVATPGNKLVSADYSQIELRLLSEVA 811 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 KAF +G DI+ T ++ F P++ + E R K + + Y G A Sbjct: 812 DVPALRKAFQDGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLS 871 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 G ++++ + + D + ++ + ++ Sbjct: 872 IPREEAGAYIKRYFERFPGIRAYMDETRDFCRTHGYVTTLFGRKCHYPDIKASNPSIRAF 931 Query: 489 YPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSI 538 A+ +L G+A +++++A + Q +LQ+ +L E Sbjct: 932 NERAAINARLQGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLP 991 Query: 539 SARRV 543 R V Sbjct: 992 VVRSV 996 >gi|160888685|ref|ZP_02069688.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] gi|156861999|gb|EDO55430.1| hypothetical protein BACUNI_01102 [Bacteroides uniformis ATCC 8492] Length = 958 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 95/584 (16%), Positives = 183/584 (31%), Gaps = 100/584 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +P+ V A AY PV +R E + ++ + Sbjct: 388 LSIDTETTGTEPMDAELVGMSFSDAENR--AYYV---PVP-AEREEVLKIVNEFRPLFEN 441 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP--SSLKNACLALNFSEH 121 E M V N ++ I+ + G+ + K + ++LA P + + Sbjct: 442 EKSMKVGQNIKYDMIILQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAEIYLHYQ 498 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 ++E + K D PP D Y D + T +L L Sbjct: 499 TIHIDELIGARGKNQKNMRDLPPEDV------------YRYACEDADVTLKLKNVLEKEL 546 Query: 182 ----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E L + I G +D + + + + ++++++I ++ Sbjct: 547 KEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGET 606 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + LF I T + + S + + + K Sbjct: 607 F-NISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLKK 665 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L + ++ GR+ + + TGR S QN+P + Sbjct: 666 LLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR------------ 712 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I G + AD + IE R++A ++ + I AF +G Sbjct: 713 ------------DEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIDAFLSG 760 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T AK + I+ V+ + R K + Y G A+ + Sbjct: 761 HDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQEAKELIDG 820 Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500 + + + D S + ++ A+ + G Sbjct: 821 YFETYPQVKEYMDKSIQVARENGYVETIFHRKRFLPDINSRNGVVRGYAERNAINAPIQG 880 Query: 501 TACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 +A +++K A +Q +LQ+ +L +E Sbjct: 881 SAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKE 924 >gi|154494277|ref|ZP_02033597.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] gi|154085961|gb|EDN85006.1| hypothetical protein PARMER_03628 [Parabacteroides merdae ATCC 43184] Length = 940 Score = 255 bits (651), Expect = 2e-65, Method: Composition-based stats. Identities = 82/541 (15%), Positives = 164/541 (30%), Gaps = 91/541 (16%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + L++ + + N F+ ++ +K GI I + T + Sbjct: 408 EADKILAHFSPALQNPKSLKIGQNIKFDILVVRKY-GIRIAGPLF-DTMIAHYLLNPELR 465 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 +E K + + + D + Y D + Sbjct: 466 HGMD----YLAETYLKYKTVRIEELIGPRERKQLTMRDVPVVQVAE-------YAAEDAD 514 Query: 169 ATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L P D E L + + G +D + + E + K Sbjct: 515 ITLKLKNYFTPCLEKEGLESLFYDIEMPLIYVLAEMEYTGVTLDTVALKQSSEELTTALK 574 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 KL+++I +L + + LF I+ T S + ++ Sbjct: 575 KLEKEIYELAGMKF-NINSARQVGEVLFDHLKIEEKARKTKTGSYSTSEEILEKMRSKHP 633 Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + KL + L E ++ G++ + + TGR S QN+P Sbjct: 634 VVGKLLEYRGLKKLLSTYIDALPELINPETGKIHTSYN-QAVTSTGRLSSTNPNLQNIP- 691 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAW 391 +R A AD + IE R++A Sbjct: 692 -----------------------VRDELGREIRKAFTAENEDCIFFSADYSQIELRIMAH 728 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 ++ + I+AF +G DI+ T AK + P+++V+ + R K + Y G A+ Sbjct: 729 LSQDAHMIEAFRSGADIHAATAAKIYGIPVEEVTSDMRRKAKTANFGIIYGISVFGLAER 788 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 + ++ + + + D SH+ ++ Sbjct: 789 LSIPRAESKELIEGYFKTYPDIRAYMDESIEVAKEKGYVETIYKRKRFLPDINSHNAIVR 848 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGG 536 A+ + G+A +++K A K + +LQ+ +L E Sbjct: 849 GYAERNAINAPIQGSAADIIKVAMVRIFNRFETEGLKSKMILQVHDELNFNVYKDELEKV 908 Query: 537 S 537 Sbjct: 909 K 909 >gi|302877443|ref|YP_003846007.1| DNA polymerase I [Gallionella capsiferriformans ES-2] gi|302580232|gb|ADL54243.1| DNA polymerase I [Gallionella capsiferriformans ES-2] Length = 907 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 98/553 (17%), Positives = 183/553 (33%), Gaps = 105/553 (18%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A A+ + P +L D A + L +L E + N +++ +F GI Sbjct: 360 AAYLPLAHRYPGVPDQL-DL---DATLARLRPWLESEQHKKLGQNLKYDKHIFANH-GIA 414 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIAR---FCKGSIDSP 143 + T + + S LAL EE A+ F + +D Sbjct: 415 LRGISD-DTLLESYVLESHKSHDMDSLALRHLGVKTISYEEVAGRGAKQICFDQVDLD-- 471 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQ 192 + Y D + T +L + L P D E + Sbjct: 472 --------------IATRYAAEDADITLQLHQSLAPEITGKTGLQHVYRDIELPAMQVLF 517 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G +D +L+ + + L+ + + + ++ LF + Sbjct: 518 VMERNGVLLDANLLHVQSHELGVKLIALEARAHEAAEQPF-NLNSPKQIQEILFDKLKLP 576 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRLR 306 + + S + +LA D L ++ + KL + L + V+ + GR+ Sbjct: 577 VKKKTPSGAPST-DEEVLQELALDYPLPKILLEYRGMAKLKSTYTDKLPKMVNRATGRVH 635 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 + + TGR + QN+P + +R Sbjct: 636 TSYS-QAVAVTGRLASSDPNLQNIPIRS------------------------AEGRRIRE 670 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 IA +G +V AD + IE R++A ++G+ ++AFA ED++ T A+ F T V+ Sbjct: 671 AFIAPSGSCIVAADYSQIELRIMAHLSGDAGLLQAFAKNEDVHRATAAEIFMTTPVDVTT 730 Query: 427 EQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-- 480 EQR KV+ L Y AK + ++ + D + ++ Sbjct: 731 EQRRYAKVINFGLIYGMSAFGLAKQLGIERGAAQAYIARYFARYPGVRDYMDSTREQAKQ 790 Query: 481 ---------HHLWM----------QDQYPEFAVKDKLIGTACELVKKAWRA--------- 512 LW+ + A+ + GTA +L+K A Sbjct: 791 QGYVETVFGRRLWLPEINSSNAMKRQGAERAAINAPMQGTAADLIKLAMIQVQGWLETEK 850 Query: 513 -KHQGVLQLWKDL 524 K + ++Q+ +L Sbjct: 851 LKTRLIMQVHDEL 863 Score = 44.0 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652 Q + D++ M K +++ VHDE+V E PD + L LM Sbjct: 828 QGTAADLIKLAMIQVQGWLETEKLKTRLIMQVHDELVLEVPDDELSLIKASLPGLMC 884 >gi|94264033|ref|ZP_01287833.1| DNA polymerase A [delta proteobacterium MLMS-1] gi|93455544|gb|EAT05731.1| DNA polymerase A [delta proteobacterium MLMS-1] Length = 910 Score = 255 bits (650), Expect = 2e-65, Method: Composition-based stats. Identities = 101/571 (17%), Positives = 190/571 (33%), Gaps = 111/571 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLC-----AYAWDDE----PVKLW------DRT 48 L ID ET S L AE I+LC A A D+ P W Sbjct: 316 LVIDTETTSLNALR-------AELVGISLCPLPAAATAADNSQPTPPPTAWYLPIGHRLA 368 Query: 49 EQSAMPSDLLQY---------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + S P L L D ++ + HN ++ + K + + S++ Sbjct: 369 DGSPAPGQLPLAAVQQQLAPLLGDPQLLKLGHNLKYDLQVLKSH---GLELAAPLADSMI 425 Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 A P + + +++ E + F + + +V+ Sbjct: 426 ASYLIDPGR-----RSHKLDDLSSELLE--RQLTSF--AEVSAGDRRPEAFAYVEP-AAA 475 Query: 160 GEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 Y +DV A+R L++ P L + E L + + G +D ++ +L Sbjct: 476 CRYSCQDVVASRLLWELFAPQLQQLGLDSLLHEVEMALLPILARMERLGILVDPAVLDEL 535 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 + +E +L+ I +L + L L+ + ++G + Sbjct: 536 EREFGRELARLESKIAELAGESF-NINSPRQLGEVLYERLKLPHGRKTKGKTGYSTDYRE 594 Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +LA L S + KL + L+ + DGR+ T + TGR S Sbjct: 595 LERLAAYHDLPAAVISHRNLSKLKSTYVDKLATLIDPADGRVHTTFN-QTVTATGRLSSS 653 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R+ +A+ G + AD + Sbjct: 654 NPNLQNIPIRT------------------------PEGRRLRAAFVAAAGHLFLAADYSQ 689 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 I+ RVLA +G+ +AFA+ +DI+ T A+ F VS + R + K + + Y Sbjct: 690 IDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSADMRRVAKTINFGIVYGM 749 Query: 444 G----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM-------------- 485 A+ + + ++ + + F ++ Sbjct: 750 SAFGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQARRDGWVGTLLNRRRPLPEI 809 Query: 486 -------QDQYPEFAVKDKLIGTACELVKKA 509 ++ A+ + GTA +++K A Sbjct: 810 NSGNKMRREFAERTAINTPIQGTAADIIKLA 840 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 64/219 (29%), Gaps = 16/219 (7%) Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK--DKLIGTACE 504 F A H L +++ + + + QD + A + G Sbjct: 673 AFVAAAGHLFLAADYSQIDLRVLAHYSGDPVLQEAFAHDQDIHARTAAEIFRVNQGLVSA 732 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFAC-VVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 +++ + + G++ ++ R + + V+R + V Sbjct: 733 DMRRVAKTINFGIVYGMSAFGLAEQLRCSRKEAQTFIDRYFELYQGVLRFMQEIVEQARR 792 Query: 564 SSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATK 619 + + +N+ MR +Q + DI+ + + Sbjct: 793 DGWVGTLLNRRRPLPEINSGNK--MRREFAERTAINTPIQGTAADIIKLAAIACDRALRE 850 Query: 620 NGYD--IVLTVHDEIVSETPDTPYFSV-----GTLCSLM 651 G +L +HDE++ E P V + +M Sbjct: 851 AGCRSEALLQIHDELIFEVPQDELAQVGPLIRQAMEEVM 889 >gi|297569901|ref|YP_003691245.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] gi|296925816|gb|ADH86626.1| DNA polymerase I [Desulfurivibrio alkaliphilus AHT2] Length = 914 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 102/576 (17%), Positives = 189/576 (32%), Gaps = 117/576 (20%) Query: 4 LFIDIETRSPQPLP----------------------------KVGVWAYAEQAVITLCAY 35 L ID ET S PL + G Y A+ Sbjct: 317 LVIDTETTSLDPLQAELVGISLTLAAPGSDESEAKASRTAAGENGACWY------LPIAH 370 Query: 36 AWDDEPVKLWDRTEQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKT-LGIDIP 89 +D + +P +++ + L D+ + + HN ++ + + L + P Sbjct: 371 RREDG------SAAANQLPLAEVRRALAPLLADDRRLKLGHNLKYDLQVLHRHDLPLAPP 424 Query: 90 SKRWICTSVL----ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + S L R++GL L L + + + A + Y Sbjct: 425 LADTMIASYLIDPSRRSHGLDV-LSEELLQRRLTSFAEVTDRDRRPEAFAHVAPAAAAAY 483 Query: 146 DCTRANHVQA-WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 C + WQLF A EL + E L + + G +D Sbjct: 484 SCEDVAATRLLWQLFQPKL-----AELELAELFY---QVEITLLPILARMERVGILLDGQ 535 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 ++ +L +QE ++L I +L + L LF + ++G Sbjct: 536 VLKELAAEFSQELERLSSKIYQLAGVEF-NINSPRQLGEVLFERLKLPHGRKTKGKTGYS 594 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTG 318 + +LA L + + KL + LS ++ DGR+ + + TG Sbjct: 595 TDIRELERLAAYHDLPAAIIAQRNLSKLKSTYVDKLSTLINPADGRIHTSFN-QTVTATG 653 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + +R IA+ G + + Sbjct: 654 RLSSSNPNLQNIPVRT------------------------QEGRRIRGAFIAAPGHRFLA 689 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + I+ RVLA + + ++AF +DI+ T A+ F V+ + R + K + Sbjct: 690 ADYSQIDLRVLAHYSADPMLLEAFQQDQDIHRRTAAEIFRVNPAMVTADMRRVAKTINFG 749 Query: 439 LGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQD 487 + Y A+ + + + ++ + + TF + ++ L + Sbjct: 750 IIYGMSAFGLAEQLRCSRKEAQVFIDRYFELYRGVKTFMEEIVEQARRDGFVRTLLKRRR 809 Query: 488 QYPEF--------------AVKDKLIGTACELVKKA 509 Q PE A+ + GTA +++K A Sbjct: 810 QLPEINSSNKLRREFAERTAINTPIQGTAADIIKLA 845 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 8/126 (6%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 ++ + R + R V + V + +N++ +R Sbjct: 765 CSRKEAQVFIDRYFELYRGVKTFMEEIVEQARRDGFVRTLLKRRRQLPEINSSNK--LRR 822 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV 644 +Q + DI+ + + +L +HDE++ E P+ +V Sbjct: 823 EFAERTAINTPIQGTAADIIKLAAIACDRELRRKNFNTEALLQIHDELIFEVPEDEQAAV 882 Query: 645 GTLCSL 650 G L Sbjct: 883 GKLVQQ 888 >gi|300771710|ref|ZP_07081585.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] gi|300761699|gb|EFK58520.1| DNA-directed DNA polymerase I [Sphingobacterium spiritivorum ATCC 33861] Length = 930 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 88/505 (17%), Positives = 164/505 (32%), Gaps = 81/505 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLA 115 L D + V N ++ +L + D+ K + ++LA + LA Sbjct: 406 FKPVLEDANIEKVGQNIKYDILLLSRY---DVKVKGTLFDTMLAHYLIDPDTRHGMDVLA 462 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 N+ ++ LI KG D +L EY D + T +L + Sbjct: 463 ENYLGYIP--VSITKLIGE--KGKKQGNMRDVEI-------ELIKEYASEDADITLQLKE 511 Query: 176 RLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + PL + E L + I G +ID+D++ + I ++ + L+ I Sbjct: 512 KFEPLLEETATLKLAQEVEFPLVYVLSEIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIY 571 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILN 280 + + L LF +D T + + LA IL+ Sbjct: 572 EKAGVKFNIA-SPKQLGEVLFDKLQLDPKAKKTKTGQYKTGEDVLLTLANKSDIVQDILD 630 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ L ++ L T + TGR S QN+P + Sbjct: 631 FRQLQKLKSTYVDALPGLINPTTGLIHTSYNQAVAATGRLSSTNPNLQNIPIRTER---- 686 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR I ++ AD + IE R++A ++ + + Sbjct: 687 --------------------GREVRKAFIPRSENNVILSADYSQIELRLMAELSQDANML 726 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 +AF G DI+ T AK + +D+VS +QR K + + Y A + Sbjct: 727 EAFQKGYDIHRATAAKVYGLELDEVSSDQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREA 786 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + Q+ Q + A + ++ ++ A+ Sbjct: 787 ADIIDQYFQQYSGIRDYMAKAIASAKENGFVETILKRRRYLRDINSANMTVRGFAERNAI 846 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ 519 + G+A +++K A + + Q Sbjct: 847 NAPIQGSAADMIKVAMLRIQEDIEQ 871 >gi|225013103|ref|ZP_03703517.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] gi|225002761|gb|EEG40743.1| DNA polymerase I [Flavobacteria bacterium MS024-2A] Length = 940 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 97/553 (17%), Positives = 189/553 (34%), Gaps = 97/553 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDLLQYLR 62 D ET S L +A + A++W+ + L D+TE + + Sbjct: 372 DTETTSLNAL----------EAELVGIAFSWNKGKGYYLALPEDKTEVLEILDPFKAFFE 421 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121 + + HN ++ + + DI K + +++A LA + + Sbjct: 422 HPEIEKIGHNLKYDLKVLRNY---DIHVKAPLFDTMIAHYLINPDMRHNMDILAETYLNY 478 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR----- 176 + LI + KG + + + EY D + T +L + Sbjct: 479 SA--QSITELIGK--KGKNQGTMREVSL-------EQQTEYAVEDADITLQLKEYFHEEM 527 Query: 177 -----LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L E L + + G +D+ + L +A++ +KL+ I ++ Sbjct: 528 STAKTLELYQKVELPLVSVLTNMECEGINLDVSFLKSLSVTLAEDIQKLEAAIFEVAGEN 587 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L + LF + T + + ++ LAKD + ++ K Sbjct: 588 FNLA-SPKQLGLILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHPIISDILDWRSLQK 646 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L ++ GR+ + TGR S QN+P + Sbjct: 647 LQNTYVDALPNEINPKTGRVHTIYN-QAVAATGRLSSNNPNLQNIPIRTER--------- 696 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR I L+ AD + IE R++A ++G++ + AF N Sbjct: 697 ---------------GQQVRKAFIPRDENHVLMAADYSQIELRIIAALSGDEGMLSAFQN 741 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 EDI+ T +K FN P+++V++EQR K + + Y G ++ S ++ Sbjct: 742 NEDIHSATASKVFNVPLEEVTREQRGNAKTVNFGIIYGVSAFGLSQQTNLNRSEAKELIE 801 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + ++ + S + ++ AV + Sbjct: 802 TYYATYPKLRSYMQDQVDFARDNGYVSTVLGRRRYLKDINSQNAIVRGAAERNAVNAPIQ 861 Query: 500 GTACELVKKAWRA 512 G+A +++K A A Sbjct: 862 GSAADIIKLAMIA 874 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + ++L VHDE+V + P ++ + Sbjct: 860 IQGSAADIIKLAMIAIQNRLENKNWKSKMLLQVHDELVFDVPKEEINTLQEMVK 913 >gi|295132395|ref|YP_003583071.1| DNA polymerase I [Zunongwangia profunda SM-A87] gi|294980410|gb|ADF50875.1| DNA polymerase I [Zunongwangia profunda SM-A87] Length = 941 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 108/622 (17%), Positives = 214/622 (34%), Gaps = 111/622 (17%) Query: 1 MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + + D ET S PL +A + A++W+ + L+ Sbjct: 365 MKQKSVCFDTETTSLNPL----------EAQLVGIAFSWEGGKGYYLPFEDNIEKTQQLI 414 Query: 59 QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113 + LR + + N ++ + K I + +++A Sbjct: 415 ELLRPFFESPEIEKIGQNLKYDIKVLDKY---GIKVEGPTFDTMIAHYLINPDMRHNMDI 471 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 LA + + + LI + KG D A + Y D + T +L Sbjct: 472 LAETYLNYTP--QPISELIGK--KGKNQKSMRDVPLAEQTE-------YAAEDADITFQL 520 Query: 174 FK------------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 + +L ++ E L + + G +DLD + KL E + ++ K+L+ Sbjct: 521 KEFFEKELDEAKTRKLF--NEIEMPLVEVLADMEIEGINLDLDFLKKLSEALDRDIKELE 578 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 I + + S L + LF + T + S ++ LA + + + Sbjct: 579 AKIYEAAGEEFKIS-SPKQLGIILFEKLALVKKPKKTKTGQYSTSEDVLSYLAPEHEIVQ 637 Query: 282 LASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++KL + L V GR+ A+ TGR S QN+P + Sbjct: 638 HVLDYRGLVKLQNTYVDALPGQVEKSSGRVHTDYVQTIAA-TGRLSSNNPNLQNIPIRTE 696 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 VR I + L+ AD + IE R++A ++ Sbjct: 697 R------------------------GRQVRKAFIPRSDDYVLLAADYSQIELRIIAALSE 732 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 E+ IKAF +GEDI+ +T ++ FN P+++V++EQR+ K + + Y G + Sbjct: 733 EETMIKAFKDGEDIHASTASQVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSL 792 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQY 489 S + + + S + + A + + ++ Sbjct: 793 SRSESKELIDTYYKTYPKLSNYIADQVAYAREHGYVSTILGRRRYLKDINSQNAVVRGAA 852 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 AV + G+A +++K A H+ + + + V +V + Sbjct: 853 ERNAVNAPIQGSAADIIKIAMINIHKKL--------GEEKLQTKMLLQVHDELVFDVYKP 904 Query: 550 VMRRHKRDVHIVLPSSRRLVYS 571 + + K+ + + ++ +L Sbjct: 905 ELDQVKKLIKSEMENAYQLNVP 926 >gi|161521363|ref|YP_001584790.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189352470|ref|YP_001948097.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|160345413|gb|ABX18498.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] gi|189336492|dbj|BAG45561.1| DNA polymerase I [Burkholderia multivorans ATCC 17616] Length = 917 Score = 255 bits (650), Expect = 3e-65, Method: Composition-based stats. Identities = 94/541 (17%), Positives = 172/541 (31%), Gaps = 110/541 (20%) Query: 49 EQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 MP L +L V + ++ + GI++ T + Sbjct: 378 RGPDMPEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLE 435 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQA 155 + + LAL K E+ GK F + ++ Sbjct: 436 SYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD--- 492 Query: 156 WQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLD 204 T +L + L P + E + L+ + + G ID Sbjct: 493 -------------ITLQLHRALYPQIAREPGLERVYREIEMPVSLVLRKMERNGVLIDDA 539 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + IA L+ L G + + F + +V + S Sbjct: 540 RLQAQSNEIATRLVDLEAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST 598 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTG 318 + +LA+D L +L + KL + L V+ GR+ + TG Sbjct: 599 -DEEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYA-QAVAVTG 656 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R + QN+P + +R IA+ G ++V Sbjct: 657 RLASNDPNLQNIPVRT------------------------AEGRRIREAFIAAPGHRIVS 692 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A I+G+ ++AF+ GEDI+ T A+ F +V+ +QR I KV+ Sbjct: 693 ADYSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFG 752 Query: 439 LGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHL 483 L Y A L + ++ + + + +A + L Sbjct: 753 LIYGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKERGYVETVFGRRL 812 Query: 484 WM----------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKD 523 W+ + A+ + GTA +L+K + A + ++Q+ + Sbjct: 813 WLPEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDE 872 Query: 524 L 524 L Sbjct: 873 L 873 >gi|302344810|ref|YP_003813163.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] gi|302150181|gb|ADK96443.1| DNA-directed DNA polymerase [Prevotella melaninogenica ATCC 25845] Length = 920 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 91/585 (15%), Positives = 189/585 (32%), Gaps = 104/585 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYL 61 ID ET S + A + +++ +++ V + E++ + + L Sbjct: 351 SIDTETTSTDAI----------SAELVGLSFSVEEKKAFYVAVPANYEEALKIVQIFKPL 400 Query: 62 -RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + +M + N ++ + + G+ + K + +++A P N +E Sbjct: 401 YESDKIMKIGQNIKYDYEVLTRY-GVTLQGK--MFDTMIAHYLIQPELHHNMD---YMAE 454 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L + KG D + + EY D + T L L P Sbjct: 455 TLLGYQTIHIEELLGPKGKKQKNMRDLSPTDI-------YEYAAEDADITLRLKNVLEPR 507 Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + E L + + G +D + + ++ + K+ +++I K Sbjct: 508 LKELGVEELFWNIEMPLVRVLADMELNGVCLDTEALQDTSKIFTERMKQYEQEIYKEAGE 567 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + LF I T + + S + L + R + + Sbjct: 568 EF-NISSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLESKSPIVRNILNYRGMK 626 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ G + + + TGR S QN+P + Sbjct: 627 KLLSTYIDALPKLINPRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD-------- 677 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R C I +G AD + IE R++A ++ ++ ++AF Sbjct: 678 ----------------GKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSEDENMMEAFRE 721 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G DI+ T AK ++ IDKV+ QR K + Y G A+ ++ Sbjct: 722 GHDIHRATAAKIWHVDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAKELIE 781 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + + + + S + ++ A+ + Sbjct: 782 GYFRTFPKVQVYMEHAKEVARAKGYAETLFHRRRYLADINSRNATVRGFAERNAINAPIQ 841 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 GT +++K A + + +LQ+ +L +E Sbjct: 842 GTEADIIKVAMVRIWERFKKEGIRSKMILQVHDELNFSVFPEERE 886 >gi|281422322|ref|ZP_06253321.1| DNA polymerase type I [Prevotella copri DSM 18205] gi|281403643|gb|EFB34323.1| DNA polymerase type I [Prevotella copri DSM 18205] Length = 923 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 91/590 (15%), Positives = 186/590 (31%), Gaps = 110/590 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQY 60 L +D ET S + A + ++A ++ V + E++ ++ + Sbjct: 353 LSLDTETTSTTAI----------DAELVGLSFAVKEKEAFYVAIPANREEALKIVNIFKP 402 Query: 61 L-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116 L + ++ V N ++ + + I + + ++LA L ++ Sbjct: 403 LYENPEILKVGQNIKYDYEVL---INYGIEIQGKMFDTMLAHYLIQPELYHNMDYLAEVF 459 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + +EE LI KG D ++ EY D + T L Sbjct: 460 -LNYQTIHIEE---LIG--PKGKNQKSMRDLAPSDI-------YEYAAEDADITLRLKNV 506 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L + + G ID D + + E + +++ I + Sbjct: 507 LESKLKEIDCEDLFWNVEMPLVPVLAHMEMTGVCIDTDTLKETSENLTNRLNEIEHHIYE 566 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + + LF I T + + S + QL + + Sbjct: 567 LAGESFNIA-SPRQVGEILFGKMKIVEKPKKTKTGQYVTSEEVLQQLRSKSPIIDEILNY 625 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + ++S G + + + TGR S QN+P Sbjct: 626 RGLKKLLGTYIDALPKLINSRTGHIHASFN-QAITATGRLSSSDPNLQNIP--------- 675 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R C I G AD + IE R++A ++ + ++ Sbjct: 676 ---------------VRDDDGKEIRRCFIPEPGCLFFSADYSQIELRIMAHLSQDPNMVE 720 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T AK ++ I +V+ QR K + Y G A+ Sbjct: 721 AFREGSDIHAATAAKIWHEDIKEVTDAQRKKAKTANFGIIYGITTFGLAQRMNIENREAK 780 Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495 ++ + + + + S + ++ A+ Sbjct: 781 QIIEDYFRTFPGVQAYMEKAKEMAREKGYAETLFHRRRYLPDINSKNGTVRGFAERNAIN 840 Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 + G+ +++K A + + ++Q+ +L +E Sbjct: 841 APIQGSEADIIKVAMIRIFNRFRAEGIRSKMIIQVHDELNFSVYPEEKEK 890 >gi|148258542|ref|YP_001243127.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] gi|146410715|gb|ABQ39221.1| DNA polymerase I [Bradyrhizobium sp. BTAi1] Length = 1020 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 98/507 (19%), Positives = 172/507 (33%), Gaps = 77/507 (15%) Query: 47 RTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 D L L+ ++ + N F +L + GI + + I A Sbjct: 480 LAPDQVKDRDALAALKPVLESAGILKIGFNIKFVAVLLAQH-GITLANVDDIQLMSYALD 538 Query: 103 NGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAW 156 G S SL LA + GK + F + +ID A V + W Sbjct: 539 AGRGSQKFESLAEHVLAHAVLGEGELVGSGKNKLT-FEQVAIDRATAHAAEAADVIHRLW 597 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 ++ E +++ L ER L + + RG ID ++ +L AQ Sbjct: 598 RVLKPRLV--AERMTAVYETL------ERPLVTVLAQMERRGIAIDRQVLSRLSGDFAQT 649 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK- 275 +++ ++ +L I + + LF G+ ++ T S S + LA+ Sbjct: 650 AGRVEAELQELAGEPI-NVGSPKQIGDILFGKMGLPGGTKTK-TGAWSTSASILDDLAEQ 707 Query: 276 -----DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 IL S + L V+ + T A+ TGR S QN+ Sbjct: 708 GNDFARKILEWRQVSKLKSTYTDALPTYVNPQSQRVHTTYALAATTTGRLSSNEPNLQNI 767 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R IA+ G KLV AD + IE R+LA Sbjct: 768 PVRTED------------------------GRKIRRAFIATPGHKLVSADYSQIELRLLA 803 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 IA +AF +G DI+ T ++ F PI + E R K + + Y G A Sbjct: 804 EIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPSEVRRRAKAINFGIIYGISAFGLAN 863 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485 ++++ + + D + + ++ + + Sbjct: 864 QLGIAREEASAYIKRYFERFPGIRAYMDETREFCRKHGYVTTLFGRKCHYPEIKASNASV 923 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA 512 + A+ +L GTA +++++A Sbjct: 924 RAFNERAAINARLQGTAADIIRRAMTR 950 >gi|320106496|ref|YP_004182086.1| DNA polymerase I [Terriglobus saanensis SP1PR4] gi|319925017|gb|ADV82092.1| DNA polymerase I [Terriglobus saanensis SP1PR4] Length = 934 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 83/512 (16%), Positives = 157/512 (30%), Gaps = 80/512 (15%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + A DD L D A + + L+D + H+ L + Sbjct: 403 LMAGLAADDNTALLLDLNAPEA--TAIRDALKDPALPKTTHDLK---SLLHTAGQRGLEI 457 Query: 91 KRW-ICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + S K A +A + +T + + + + P + Sbjct: 458 ANVAHDVMLYSYLINPTHGSHKLADVAARMGQSITPLVKNQT-------PPATALPEAAS 510 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 + + E + L P + + L + + G RID ++ Sbjct: 511 AIHRLAPALR----------IQAEEGELLKPYEEIDLPLVPVLLRMEQVGCRIDSQVLRD 560 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + +A + L E I ++ + L LF + + Sbjct: 561 MSSKLAVDMDALAERIYAMSGHRF-NINSPKQLGDVLFNKMDLPKPMKYGKGKVVSTAQD 619 Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA L + KL + L + +GR+ T G + TGR S Sbjct: 620 VLEELAAHHEAPALVLEYRQLAKLRSNYTEQLPQLADREGRVHTTFNQVG-TATGRLSST 678 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R+ I + G L+ AD + Sbjct: 679 NPNLQNIPTRT------------------------ALGREIRAAFIPAEGNVLLSADYSQ 714 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE R++A + + + A+ G+DI+ T A+ F + + KE R K + + Y Sbjct: 715 IELRLMAHFSQDPLLLDAYRTGKDIHTITAAEVFEVDPETMDKETRNRAKAVNFGIVYGI 774 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G A L ++++ + + F + Sbjct: 775 SPFGLAAQLGIPQGEAKLYIERYRERYAGVTAFIERTISDTRSTGKVSTLFGRTRPIPDI 834 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 S + + AV L GTA +++K A Sbjct: 835 GSRNPNQRGFAERTAVNTPLQGTAADMIKIAM 866 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 6/54 (11%) Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 Q + D++ M + L VHDE++ + P V L L Sbjct: 855 QGTAADMIKIAMLKIDAALTERKLATRMTLQVHDELLFDAPVGETEEVAALVKL 908 >gi|325521672|gb|EGD00436.1| DNA polymerase I [Burkholderia sp. TJI49] Length = 641 Score = 254 bits (649), Expect = 3e-65, Method: Composition-based stats. Identities = 107/576 (18%), Positives = 188/576 (32%), Gaps = 105/576 (18%) Query: 7 DIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-- 60 D ET S P+ VG+ E +A A+ P D EQ + L + Sbjct: 69 DTETTSLDPMVAQLVGLSFSTEPGKAAYLPVAHR---GP----DLPEQLPLDDVLARLKP 121 Query: 61 -LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118 L V + ++ + GI++ T + + + LAL Sbjct: 122 WLESAERKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLESYVLESHRTHDMDSLALRHL 179 Query: 119 SEHLTKMEE---------GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 K E+ G +A + D T H + V Sbjct: 180 GVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITLQLHHALYPQ--------VAR 231 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L + + E + L+ + + G ID + IA +L+ +L Sbjct: 232 EPGLQRVYR---EIEMPVSLVLRKMERTGVLIDDARLQAQSTEIATRLIELEGQAYELAG 288 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 G + + F + +V + S + +LA+D L +L + Sbjct: 289 GEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAEDYPLPKLLLEHRGL 346 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L V+ GR+ + TGR + QN+P + Sbjct: 347 SKLKSTYTDKLPRMVNPATGRVHTNYA-QAVAVTGRLASNDPNLQNIPVRT--------- 396 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IAS G ++V AD + IE R++A I+G+ ++AF+ Sbjct: 397 ---------------AEGRRIREAFIASPGHRIVSADYSQIELRIMAHISGDASLLRAFS 441 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 GEDI+ T A+ F +V+ +QR I KV+ L Y A L + Sbjct: 442 QGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLASNLGITRDAAKLYI 501 Query: 460 QQFSQNVKSTSTFED-----------WEQAESHHLWM----------QDQYPEFAVKDKL 498 ++ + + + E LW+ + A+ + Sbjct: 502 DRYFARYPGVAQYMEDTRTVAKEKGYVETVFGRRLWLPEINGGNGPRRQAAERAAINAPM 561 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDL 524 GTA +L+K + A + ++Q+ +L Sbjct: 562 QGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 597 >gi|209523939|ref|ZP_03272491.1| DNA polymerase I [Arthrospira maxima CS-328] gi|209495611|gb|EDZ95914.1| DNA polymerase I [Arthrospira maxima CS-328] Length = 945 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 119/672 (17%), Positives = 227/672 (33%), Gaps = 150/672 (22%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAM-PSDLLQ 59 D ET S L +G C + + + T+ + ++L Sbjct: 373 DTETTSLEPRDANLVGIG------------CCWGSELSDLAYIPLNHTQGEMLNIEEVLP 420 Query: 60 YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 LR E N+ F+R++ ++ GI + + T + + SS L+ Sbjct: 421 ALRPILESENYPKTLQNAKFDRLIL-RSQGITLKGVVF-DTMLASYVINPESSHNLTDLS 478 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + L + + + + K D + + F + +++ K Sbjct: 479 LRYLPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQI-----TQKMQDILK 533 Query: 176 RLIPLSD----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + PL+D E+ L + + +G RID D + +L + + + + L++ + + Sbjct: 534 DVPPLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSKQLGETLESLEKASHQAAGEV 593 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF +D + + + +L D + + K Sbjct: 594 F-NLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVINYILEYRTLSK 652 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E V SD GR+ + TGR S QN+P + Sbjct: 653 LKSTYVDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRT----------- 700 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R I +G LV AD + IE R+LA ++ E I+A+ Sbjct: 701 -------------EFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKMLIEAYNTN 747 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +D++ T F+ D+++ ++R +GK++ + Y G++ Sbjct: 748 QDVHSLTAQLLFDK--DEITADERRLGKIINFGVIYGMGSQ------------------- 786 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 FA + + TA + + +++ GV + L Sbjct: 787 -------------------------RFAREVGVSATAGKQFIDRFNSQYPGVFEY---LE 818 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-DCSYLNTAT 584 + +G ++ RR + +KG D LN Sbjct: 819 SQKLAAINQG-----------------------YVETILGRRRYFESLKGRDRDRLNYQD 855 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTP 640 Q++R +Q S DI+ M + Y ++L VHDE+V E P + Sbjct: 856 EQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQVHDELVFEVPLSE 909 Query: 641 YFSVGT-LCSLM 651 + + + S M Sbjct: 910 WEELQHQIKSTM 921 >gi|210077507|gb|ACJ07018.1| PolI [Thermus sp. Tok23.A1] Length = 833 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 91/493 (18%), Positives = 156/493 (31%), Gaps = 76/493 (15%) Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 LA L L E + + L+A + +P R Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTNPEGVARRYGG---- 398 Query: 157 QLFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 F E + LF+ L P + ER L + + RG R+D+ L+ Sbjct: 399 -EFTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLE 457 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 L + +E ++L+ +I +L + L LF G+ V +E T K + Sbjct: 458 ALSFELEKEMERLEGEIFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQ 516 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + L + L + KL + L V GRL A+ TGR S Sbjct: 517 GALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLS 575 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R +A G L+ AD Sbjct: 576 SSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+DI+ T A F V + R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484 A + ++++ Q+ + + E Sbjct: 672 GMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVP 731 Query: 485 --------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVV 532 +++ A + GTA +L+K A + L + + V Sbjct: 732 DLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEV 791 Query: 533 QEGGSISARRVAN 545 E + A+ + Sbjct: 792 PEDRAEEAKALVK 804 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R Y + G Y+ S++ R ++ N+ VQ + D Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 ++ M G ++L VHDE+V E P+ L +M Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807 >gi|325286748|ref|YP_004262538.1| DNA polymerase I [Cellulophaga lytica DSM 7489] gi|324322202|gb|ADY29667.1| DNA polymerase I [Cellulophaga lytica DSM 7489] Length = 946 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 103/619 (16%), Positives = 197/619 (31%), Gaps = 105/619 (16%) Query: 1 MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + + D ET PL A + A++W+ E +L+ Sbjct: 370 MKQTSVCFDTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPEDQDQAQELI 419 Query: 59 QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + LR DE + + N ++ + +K I + T + L Sbjct: 420 EQLRPFFEDEKIEKIGQNLKYDIKVLRKY--NLIIKGAYFDTMLAHYLINPDMRHNMDVL 477 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 A + + LI + K + + EY D + T +L Sbjct: 478 AETYLNYTPI--SITELIGKKGKNQLSMRQVPIEKQT---------EYAVEDADITYQLA 526 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 P +D E L + + G +D+D + L E + + K L+ I Sbjct: 527 SHFKPELKDAKTEELFNDIEIPLLSVLADMELEGINLDVDFLNSLSEELNTDIKNLETSI 586 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + + L LF + T + + ++ LA+D + + Sbjct: 587 YEAAGEEFNIA-SPKQLGEILFGKLKLVDKPKKTKTGQYSTAEDVLSYLAQDHEIIKNIL 645 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + V GR+ + TGR S QN+P + Sbjct: 646 EYRGLAKLKSTYIDALPDQVEESTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER-- 702 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 VR + L+ AD + IE R++A ++ E Sbjct: 703 ----------------------GRQVRKAFVPRDENYTLLAADYSQIELRIIAALSDETT 740 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+AF NGEDI+ +T +K FN P+D+V++EQR+ K + + Y G + Sbjct: 741 MIEAFKNGEDIHASTASKVFNVPLDQVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRG 800 Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492 + + + + + S + ++ Sbjct: 801 ESKELIDAYYETYPKLKKYMSELVDFARDNGYVQTVLGRRRYLKDINSRNAVVRSAAERN 860 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 AV + G+A +++K A H+ + G + + V + + + Sbjct: 861 AVNAPIQGSAADIIKIAMINIHKKLT--------GGNFKTKMLLQVHDELVFDAHKTELE 912 Query: 553 RHKRDVHIVLPSSRRLVYS 571 + + + ++ L Sbjct: 913 EVRALIKTEMENAYSLAVP 931 >gi|209886676|ref|YP_002290533.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] gi|209874872|gb|ACI94668.1| DNA polymerase I (POL I) [Oligotropha carboxidovorans OM5] Length = 1003 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 98/524 (18%), Positives = 176/524 (33%), Gaps = 77/524 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L A D + E + + L L E V+ + F +L + I + + Sbjct: 458 LFASGLADGQI------EAAKVLETLTALLESEAVLKTGFDIKFAAVLLAQH-NITLRTV 510 Query: 92 RWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + A G S L L H + G+ I+ + Y Sbjct: 511 DDVQLMSYALDAGRSSHDIEALAEQWLGHEMIAHADIVGSGRNRISLDQVEIPRAAEYGA 570 Query: 148 TRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A+ ++ W +F E +++ L ER L + + RG ID ++ Sbjct: 571 ESADVIMRLWLVFKARLIS--ERMNNVYESL------ERPLIDVLARMERRGIMIDRQVL 622 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +L AQ +L+ +I ++ I + L +F G+ ++ T + Sbjct: 623 ARLSGEFAQSAARLEAEIREIAGEDI-NPGSPKQLGDVMFGKMGLPGGQKTK-TGAWSTT 680 Query: 267 HSNITQLAK------DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 S + LA+ IL+ S + L + + T A+ TGR Sbjct: 681 ASILEDLAEAGHDFPRKILDWRQVSKLKSTYTDALPTHLLPQTQRVHTTYALAATTTGRL 740 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + +R IA+ G KLV AD Sbjct: 741 SSNEPNLQNIPVRTED------------------------GRKIRRAFIAAKGHKLVSAD 776 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+LA IA +AF +G DI+ T ++ F PI + E R K + + Sbjct: 777 YSQIELRLLAEIADIPVLKQAFKDGLDIHAMTASEMFGVPIKDMPGEVRRRAKAINFGII 836 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------W 475 Y G A G ++++ + + D + Sbjct: 837 YGISAFGLANQLGIPREEAGAYIKKYFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHY 896 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ + ++ A+ +L GTA +++++A + Q Sbjct: 897 PDIKASNPSLRAFNERAAINARLQGTAADIIRRAMIRMEDALTQ 940 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 9/73 (12%) Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655 Q + DI+ M ++L VHDE+V E PD+ ++ + +M + P Sbjct: 920 QGTAADIIRRAMIRMEDALTQKKLAARMLLQVHDELVFEVPDSEVDKTLPVIREVMEQAP 979 Query: 656 SWAKGL--PLKAE 666 A L PL+ + Sbjct: 980 FPATALSVPLRVD 992 >gi|327312866|ref|YP_004328303.1| DNA-directed DNA polymerase [Prevotella denticola F0289] gi|326945701|gb|AEA21586.1| DNA-directed DNA polymerase [Prevotella denticola F0289] Length = 920 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 90/586 (15%), Positives = 182/586 (31%), Gaps = 106/586 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-TEQSAMPSDLLQY--- 60 ID ET S + A + +++ ++ + + + Sbjct: 351 SIDTETTSTDAIR----------AELVGLSFSVEENKAFYVPLPANREEALKYVRIFKPL 400 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFS 119 ++ ++ + N ++ + G+ + K + +++A P +A Sbjct: 401 YENDNILKIGQNIKYDYEVLNNY-GVTLQGK--MFDTMIAHYLIQPELHHNMDYMAETLL 457 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + T E LI K + T EY D + T L L P Sbjct: 458 GYRTIHIE--ELIGPKGKKQKNMRDLSPTDI---------CEYAAEDADITLRLKHLLEP 506 Query: 180 LS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + + G +D + + + + K+ +++I K Sbjct: 507 RLKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAG 566 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + LF I T + + S + L + R + + Sbjct: 567 ETF-NIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYRGM 625 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL + L + ++ G + + + TGR S QN+P + Sbjct: 626 KKLLSTYIDALPKLINPRTGHIHTSFN-QAQTATGRLSSSDPNLQNIPVRTDD------- 677 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R C I +G AD + IE R++A ++G++ ++AF Sbjct: 678 -----------------GKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFR 720 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T AK ++ IDKV+ QR K + Y G A+ + Sbjct: 721 EGHDIHRATAAKIWHEDIDKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGEARELI 780 Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498 Q + + + S + ++ A+ + Sbjct: 781 QDYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAINAPI 840 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 GT +++K A + + +LQ+ +L +E Sbjct: 841 QGTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886 >gi|219815966|gb|ACL37085.1| DNA polymerase I [uncultured bacterium] Length = 927 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 104/577 (18%), Positives = 204/577 (35%), Gaps = 84/577 (14%) Query: 5 FIDIETRS-PQPLPK-VGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 +D ET S L + VGV A +A + + P +L + + L Sbjct: 352 AVDTETTSLDYRLARIVGVSFALQAGEAFYIPIGHDYMGAPEQL----DAQFVLDILKPI 407 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLALNF 118 L + + + + ++ +F I W ++LA P++ LA + Sbjct: 408 LENPAIGKIGQHMKYDAHVFNNH---GISLAGWAFDTMLASYVLNPTATRHGMDDLAQYY 464 Query: 119 SEHLTKMEE---GKALIAR-FCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + T E GK F + ++ PY A+ W+L+ + K + R Sbjct: 465 LNYTTTTFEQIAGKGAKQLTFNQIELEKAAPYAAEDADIT--WRLYEHFSKELAKIPR-- 520 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +RL L D E + + + G R+D+ + +L + + L+ ++L Sbjct: 521 LERL--LLDAEMPAAQVLYEMENNGIRLDIPFLAELGQRFGAQILTLESHAIELAGQPF- 577 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF GI + T ++IL + +A IL + S Sbjct: 578 NVSSPKQLGEILFDKLGIAGGKKTASGQYATGEAILEKIDHPIIAT--ILEYRSLSKLKS 635 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++L + T + TGR S QN+P + Sbjct: 636 TYTDSLIAQSDPATQRVHTSYHQAIAATGRLSSTDPNLQNIPIR---------------- 679 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 G +R IA G+ ++ AD + IE R++A + ++ +KAF +G DI+ Sbjct: 680 --------GEVGRQIRQAFIAPKGRIILAADYSQIELRLMAHFSQDEALLKAFRDGRDIH 731 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKTMASHC 455 T A+ ++ V+ +QR K + L Y A+ + T+ Sbjct: 732 QATAAEVMGIALEDVTSDQRRQAKAINFGLLYGMSAFGLAKQLNLSRAEAQEYITLYFSR 791 Query: 456 GLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + +N ++ + + + E + + ++ A+ L G+A + Sbjct: 792 YPSVHDYMENTRALAAEQGYVETVLGRRLYMENIRAGNAMVRQAAERAAINAPLQGSAAD 851 Query: 505 LVKKAWRAKHQGVLQLWK----DLTEGFACVVQEGGS 537 ++K A + Q + + + + V E + Sbjct: 852 IIKLAMISVDQSLPKEHAKMLLQVHDELVFEVDEDKA 888 Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 14/92 (15%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KN 620 RRL +++ + + A R +Q + DI+ M + K Sbjct: 817 GRRLYMENIRAGNAMVRQAA---ERAAINAP------LQGSAADIIKLAMISVDQSLPKE 867 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 ++L VHDE+V E + V L LM Sbjct: 868 HAKMLLQVHDELVFEVDEDKADEVTALLKKLM 899 >gi|282858640|ref|ZP_06267798.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] gi|282588558|gb|EFB93705.1| DNA-directed DNA polymerase [Prevotella bivia JCVIHMP010] Length = 920 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 98/592 (16%), Positives = 190/592 (32%), Gaps = 110/592 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLW-DRTEQSAMPSDL 57 L +D ET S + QA + ++A +++ V + DR E + Sbjct: 348 KVLSLDTETTSTDTM----------QAELVGLSFAIEEKKAFYVAIPSDRREAEKFVNIF 397 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACL 114 +E ++ V N ++ + + GIDI K + +++A L ++ Sbjct: 398 RPLYENENILKVGQNIKYDYEVLAQY-GIDIKGK--MFDTMIAHYLIQPELHHNMDYMAE 454 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L ++E + K D P D EY D + T +L+ Sbjct: 455 TL-LGYKTVHIDELIGAKGKHQKNMRDLSPTDI------------YEYASEDADITLQLY 501 Query: 175 KRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 K L P E L + + G +D D + + ++ + + I Sbjct: 502 KVLEPKLKEVNAEDLFWKIEMPLVRVLADMEMNGVCLDTDALAETSKIFTDRMNEYEALI 561 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + + + LF I T + + S + L + Sbjct: 562 YEQASEKF-NISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLEASAPIVGNIL 620 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 I KL + L + ++ G + + + TGR S QN+P + Sbjct: 621 KYRGIKKLLSTYIDALPKLINKRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD-- 677 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R C I AD + IE R++A ++ ++ Sbjct: 678 ----------------------GKEIRKCFIPEPKCLFFSADYSQIELRIMAHLSQDENM 715 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 ++AF +G DI+ T AK ++ P+++VS QR K + Y G A+ Sbjct: 716 MEAFRSGHDIHRATAAKIWHVPMEEVSDAQRKKAKQANFGIIYGITTYGLAQRMGIPNGE 775 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 ++ + + S F + S + ++ A Sbjct: 776 AKELIEGYFKTFPSVKAFMEKAKQTAREKGYAETLFNRRRYLSDINSKNGTVRGFAERNA 835 Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535 + + GT +++K A + + +LQ+ +L +E Sbjct: 836 INAPIQGTEADIIKVAMIRIWERFRRENIRSKMILQVHDELNFSVFPEEKEK 887 >gi|326798931|ref|YP_004316750.1| DNA polymerase I [Sphingobacterium sp. 21] gi|326549695|gb|ADZ78080.1| DNA polymerase I [Sphingobacterium sp. 21] Length = 928 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 85/559 (15%), Positives = 174/559 (31%), Gaps = 97/559 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113 + + + N F+ ++ D+ + ++LA + Sbjct: 402 QQFKPVFENPAIGKIGQNLKFDILVLS---WYDVKVAGELFDTMLAHYLIDPETRHGMDV 458 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ N+ + LI KG ++ D + Y D + T +L Sbjct: 459 LSENYLGYTP--VSITTLIGPKGKGQLNMRDVDPKTVSD---------YAAEDADITLQL 507 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + P+ + E L + + G RID+ + I E + L+ Sbjct: 508 KEIFEPMLIKVEADKLAHEVEFPLVPVLVDMERVGVRIDVKALSDFSLAIQNEVQILEAR 567 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI------TQLAKDL 277 I + + L LF +D T + + + + +D+ Sbjct: 568 IYEKAGVPFNIA-SPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLMALANKSDIVQDI 626 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + R + ++ L + ++ GR+ + + TGR S QN+P + Sbjct: 627 LEYRQLQKLRST-YVDALPQLINTKTGRVHTSYN-QAVAATGRLSSNNPNLQNIPIRTER 684 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGE 395 VR IA + ++ AD + IE R++A I+ + Sbjct: 685 ------------------------GREVRKAFIARDDEHVILSADYSQIELRLIAEISKD 720 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTM 451 + AFA G DI+ T AK + +++V+ QR K + + Y A + Sbjct: 721 ANMLDAFAKGLDIHTATAAKVYGVGLEEVTGNQRRNAKAVNFGIIYGQSAFGLSQSLGIP 780 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 ++Q+ + + A + + ++ Sbjct: 781 RREAADMIEQYFIQYPGIRDYMNNTIAFAKEHGYVETLLKRRRYLRDINSANATVRGFAE 840 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLW------KDLTEGFACVVQEGGSISARRVA 544 A+ + G+A +L+K A HQ + Q + + V + + + Sbjct: 841 RNAINAPIQGSAADLIKIAMIHIHQDIQQANLKGKMTMQVHDELVFDVPRNEVAAFKEII 900 Query: 545 NVPRLVMRRHKRDVHIVLP 563 R K + +P Sbjct: 901 E------ARMKGALKTEVP 913 >gi|158335307|ref|YP_001516479.1| DNA polymerase I [Acaryochloris marina MBIC11017] gi|158305548|gb|ABW27165.1| DNA polymerase I [Acaryochloris marina MBIC11017] Length = 957 Score = 253 bits (647), Expect = 5e-65, Method: Composition-based stats. Identities = 106/643 (16%), Positives = 204/643 (31%), Gaps = 127/643 (19%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + L L + V N+ F+R++F + GI + + T + Sbjct: 409 DNLDLETALEGLRPILESDVYPKVLQNAKFDRLVF-QFQGIQLQGVVF-DTMLANYVLNP 466 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 S L+ N+ + K K T+ EYC Sbjct: 467 ERSHNLTDLSRNYLQITAKS------YKELVKKGQTIADLSITQV---------AEYCGL 511 Query: 166 DVEATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 DV T +L ++L IP + E L + + G RID + + L + Sbjct: 512 DVFTTYQLREKLEAELAAIPSLHGLFQEVELPLEAVLAVMETSGVRIDQEYLQTLSTQLE 571 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + ++L+ +L I + L LF +D+ + L + + +L Sbjct: 572 ADLQRLEAGAYELAGE-IFNLGSPKQLSEILFGRLELDVKKSRKTKLGYSTDAATLEKLQ 630 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQ 328 D + + + KL + L V D R+ + TGR S Q Sbjct: 631 GDHPIIDVLLEYRTLAKLKSTYVDALPMLVRDDTHRIHTDFN-QAVTATGRLSSSNPNLQ 689 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + S +R+ I + L+ AD + IE R+ Sbjct: 690 NIPIRT------------------------EFSRQIRAAFIPESSWILMAADYSQIELRI 725 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA ++ E ++A+ NG+D++ T D+++ E+R + K++ + Y G Sbjct: 726 LAHLSQEPRLLEAYRNGQDVHTLTAQLL--LEKDQIAAEERRLAKIINFGVIYGMG---P 780 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 A G+ + ++ ++ + + ++ M+ + + ++G Sbjct: 781 HRFAREAGVKYSEAKDFIQ--RFYDRYPEVFAYLQRMEREAVSQGYVETILGR------- 831 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 R R + + Sbjct: 832 ---------------------------------------RRYFEFDSRGLKKYRGKALE- 851 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD----I 624 ++V +++ L+R +Q S D++ M + Sbjct: 852 ELAEVDLSDIKMSSYDRGLLRAAANAP------IQGSSADLIKIAMVQLQAALEPYKSRL 905 Query: 625 VLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666 ++ VHDE+V E P V + + M +PL AE Sbjct: 906 LMQVHDELVLEVPVDEVDDVRSQIKTTMETALP--LSIPLVAE 946 >gi|299142040|ref|ZP_07035174.1| DNA polymerase type I [Prevotella oris C735] gi|298576502|gb|EFI48374.1| DNA polymerase type I [Prevotella oris C735] Length = 920 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 92/598 (15%), Positives = 185/598 (30%), Gaps = 122/598 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L +D ET S + A + +A ++ A+P+D + L Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYV------AIPNDREEAL 391 Query: 62 ----------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSS 108 D +++ + N ++ + K G+ + K + ++LA L + Sbjct: 392 QYVNIFKPVYEDPSILKIGQNLKYDYEVLKNY-GVTLGGK--MFDTMLAHYVIQPELHHN 448 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + L + + E LI K D EY D + Sbjct: 449 MDYMAETLLHYKTIHIDE----LIGPRGKHQKSMRDLDPKDV---------YEYAAEDAD 495 Query: 169 ATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L L P + E L + + G R+D D + + + Sbjct: 496 ITLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMN 555 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 +L++ I + + + LF I T + + S + L Sbjct: 556 RLEQQIYEKAGETF-NISSPKQVGDILFGKMQIMEKPKKTKTGQYVTSEEVLQSLRAKHP 614 Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + KL L + ++ G + + + TGR S QN+P Sbjct: 615 IVADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFN-QALTATGRLSSSDPNLQNIPV 673 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + +R C + AD + IE R++A + Sbjct: 674 RSED------------------------GKEIRKCFVPEQDCMFFSADYSQIELRIMAHL 709 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 +G++ I+AF G DI+ T AK ++ I V+ E+R K + Y G A+ Sbjct: 710 SGDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRM 769 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487 + ++ + + + + E+ + ++ Sbjct: 770 EIDNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRG 829 Query: 488 QYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535 A+ + G+ +++K A + + +LQ+ +L +E Sbjct: 830 FAERNAINAPIQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPDEKER 887 >gi|317478024|ref|ZP_07937206.1| DNA polymerase I [Bacteroides sp. 4_1_36] gi|316905813|gb|EFV27585.1| DNA polymerase I [Bacteroides sp. 4_1_36] Length = 951 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 92/585 (15%), Positives = 182/585 (31%), Gaps = 102/585 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 L ID ET +P+ V A AY PV +R E + ++ + Sbjct: 381 LSIDTETTGTEPMDAELVGMSFSDAENR--AYYV---PVP-AEREEVLKIVNEFRPLFEN 434 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSE 120 E M V N ++ I+ + G+ + K + ++LA P ++ + Sbjct: 435 EKSMKVGQNIKYDMIILQNY-GVQVKGK--LFDTMLAHYVLQPELRHNMDYLAEIYLHYQ 491 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + + LI K + Y D + T +L L Sbjct: 492 TIHIDK----LIGARGKNQKNMRDLSPEDV---------YRYACEDADVTLKLKNVLEKE 538 Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + E L + I G +D + + + + ++++++I ++ Sbjct: 539 LKEQGAEHLFYEIEMPLVPVLVNIESNGVLLDTEALKQSSQHFTVRLQEIEKEIYEMAGE 598 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + LF I T + + S + + + Sbjct: 599 TF-NISSAKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLQSYRSKHDIIGKILEYRGLK 657 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ GR+ + + TGR S QN+P + Sbjct: 658 KLLSTYIDALPQLINPRTGRIHTSFN-QAVTATGRLSSSNPNLQNIPIR----------- 705 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I G + AD + IE R++A ++ + I+AF + Sbjct: 706 -------------DEDGKEIRKAFIPDTGCEFFSADYSQIELRIMAHLSEDKNMIEAFLS 752 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G DI+ T AK + I+ V+ + R K + Y G A+ + Sbjct: 753 GHDIHAATAAKIYKIDINDVTADMRRKAKTANFGIIYGISVFGLAERMGVSRQEAKELID 812 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 + + + D S + ++ A+ + Sbjct: 813 GYFETYPQVKEYMDKSIQVAREQGYVETIFHRKRFLPDINSRNGVVRGYAERNAINAPIQ 872 Query: 500 GTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 G+A +++K A +Q +LQ+ +L +E Sbjct: 873 GSAADIIKVAMAHIYQRFQAYNLKAKMILQVHDELNFSVPEAEKE 917 >gi|221197067|ref|ZP_03570114.1| DNA polymerase I [Burkholderia multivorans CGD2M] gi|221203739|ref|ZP_03576757.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221175905|gb|EEE08334.1| DNA polymerase I [Burkholderia multivorans CGD2] gi|221183621|gb|EEE16021.1| DNA polymerase I [Burkholderia multivorans CGD2M] Length = 920 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 92/529 (17%), Positives = 171/529 (32%), Gaps = 86/529 (16%) Query: 49 EQSAMPSDL---------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 MP L +L V + ++ + GI++ T + Sbjct: 381 RGPDMPEQLPLDDVLARLKPWLESPDRKKVGQHLKYDAQVLANY-GIELNGIE-HDTLLE 438 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAW 156 + + LAL K E+ GK + + + Sbjct: 439 SYVLESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDADITL 498 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QL + + L + + E + L+ + + G ID + IA Sbjct: 499 QLHCALYPQ-IAREPGLERVYR---EIEMPVSLVLRKMERNGVLIDDARLQAQSNEIAMR 554 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 L+ L G + + F + +V + S + +LA+D Sbjct: 555 LVDLEAQAYALAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-DEEVLQKLAED 612 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L +L + KL + L V+ GR+ + TGR + QN+ Sbjct: 613 YPLPKLLLEHRGLSKLKSTYTDKLPRMVNPSTGRVHTNYA-QAVAVTGRLASNDPNLQNI 671 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R IA+ G ++V AD + IE R++A Sbjct: 672 PVRT------------------------AEGRRIREAFIAAPGHRIVSADYSQIELRIMA 707 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AK 446 I+G+ ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Y A Sbjct: 708 HISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNADQRRIAKVINFGLIYGMSAFGLAS 767 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM---------- 485 L + ++ + + + +A + LW+ Sbjct: 768 NLGITRDAAKLYIDRYFARYPGVAQYMEDTRASAKERGYVETVFGRRLWLPEINGGNGPR 827 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + A+ + GTA +L+K + A + ++Q+ +L Sbjct: 828 RQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDKLASRMIMQVHDEL 876 >gi|254248787|ref|ZP_04942107.1| DNA polymerase A [Burkholderia cenocepacia PC184] gi|124875288|gb|EAY65278.1| DNA polymerase A [Burkholderia cenocepacia PC184] Length = 920 Score = 253 bits (647), Expect = 6e-65, Method: Composition-based stats. Identities = 101/566 (17%), Positives = 183/566 (32%), Gaps = 110/566 (19%) Query: 46 DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR 101 D EQ + L + L V + ++ + DI T + + Sbjct: 384 DMPEQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESY 440 Query: 102 TNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQ 157 + LAL K E+ GK F + ++ Sbjct: 441 VVESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----- 495 Query: 158 LFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLV 206 T +L L P + E + L+ + + G ID + Sbjct: 496 -----------ITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARL 544 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 IA +L+ + +L G + + F + +V + S Sbjct: 545 HAQSTEIATRLIELEGEAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-D 602 Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRW 320 + +LA+D L +L + KL + L V+ GR+ + TGR Sbjct: 603 EEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYA-QAVAVTGRL 661 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 + QN+P + +R IAS G ++V AD Sbjct: 662 ASNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSAD 697 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A I+G+ ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Sbjct: 698 YSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLI 757 Query: 441 YQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM 485 Y A L + ++ + + + +A + LW+ Sbjct: 758 YGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWL 817 Query: 486 ----------QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWK--- 522 + A+ + GTA +L+K + R + ++Q+ Sbjct: 818 PEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELV 877 Query: 523 -DLTEGFACVVQEGGSISARRVANVP 547 ++ EG +V+E VA + Sbjct: 878 LEVPEGELSLVREKLPEMMCGVAKLK 903 >gi|255534870|ref|YP_003095241.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] gi|255341066|gb|ACU07179.1| DNA polymerase I [Flavobacteriaceae bacterium 3519-10] Length = 949 Score = 253 bits (646), Expect = 6e-65, Method: Composition-based stats. Identities = 89/505 (17%), Positives = 176/505 (34%), Gaps = 80/505 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 ++ E V VAHN F+ + ++ K + +++A P + Sbjct: 426 FREFFEKEDVSKVAHNLKFDYKILQQY---GFSLKGLLFDTMIAHYLLNPDGKH----VI 478 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 ++ + + AL + K + + + Y D + T +L++ Sbjct: 479 DYLSEIYLNYKPVALESLIGKKGKNQLTFRSLTV------EEQTNYAAEDADITWQLYEV 532 Query: 177 LIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P E L + + G +D + + + + + L+ I + Sbjct: 533 FAPQLKKENLEDLFYKVEMPLLRVLAKMELEGVALDEKWLAQESIDLENDLRGLEAKIFE 592 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L D + L LF +D T + S + +L+ + + Sbjct: 593 LADVEF-NVNSPRQLGEILFEKLKLDPKAKKTKTGQYATSEDVLQKLSAKHDIIKYILEY 651 Query: 287 SAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 KL + L + D R+ + A+ TGR + QN+P + Sbjct: 652 RTYQKLKSTYVDALPLQIDKDDNRVHTSFSQTTAA-TGRLASVNPNLQNIPIRTLR---- 706 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A+ GKK++ AD + IE R++A I+ E+ I Sbjct: 707 --------------------GQQIRGAFVAAEGKKIISADYSQIELRLIAEISNEENMIL 746 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCG 456 AF NGEDI+V+T A+ F+ P+++V+K QR K + + Y GA + Sbjct: 747 AFQNGEDIHVSTAARLFDIPLEEVTKTQRGQAKTVNFGIIYGQGAFALAEQTGLSRTEAK 806 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVK 495 ++ + +N + + ++ L ++ AV Sbjct: 807 QMIESYFENYPRLKKYMGEQVQKAQELGYVETILNRKRHLKDINSANFVVKAHAERNAVN 866 Query: 496 DKLIGTACELVKKAWRAKHQGVLQL 520 + G+A +++K A Q + +L Sbjct: 867 APIQGSAADVIKLAMIKIDQKLSEL 891 >gi|325268321|ref|ZP_08134954.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] gi|324989463|gb|EGC21413.1| DNA-directed DNA polymerase I [Prevotella multiformis DSM 16608] Length = 920 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 91/585 (15%), Positives = 187/585 (31%), Gaps = 104/585 (17%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYL 61 +D ET S + A + +++ ++ V + +++ + + L Sbjct: 351 SLDTETTSTDAI----------SAELVGLSFSVEENRAFYVAIPADRQEATRIVGIFKPL 400 Query: 62 -RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 +E ++ + N ++ + G+ + K + +++A P N +E Sbjct: 401 YENEQILKIGQNIKYDYEVLSHY-GVTLQGK--MFDTMIAHYLIQPELHHNMD---YMAE 454 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 L KG D + + EY D + T L L P Sbjct: 455 TLLGYRTIHIEELLGPKGKKQRNMRDLSPTDI-------YEYAAEDADITLRLKHVLEPH 507 Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + E L + + G +D + + + + K+ +++I K Sbjct: 508 LKELGLEELFWNIEMPLVRVLADMELNGVCLDTEALQETSRIFTDRMKQYEQEIYKEAGE 567 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + LF I T + + S + L + R + + Sbjct: 568 TF-NIGSPKQVGDILFGKLQIMDKPKKTKTGQYVTSEEVLQSLEAKHPVVRNILNYRGMK 626 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + ++ G + + + TGR S QN+P + Sbjct: 627 KLLSTYIDALPKLINPRTGHIHTSFN-QAQTSTGRLSSSDPNLQNIPVRTDD-------- 677 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R C I +G AD + IE R++A ++G++ ++AF Sbjct: 678 ----------------GKEIRKCFIPEDGCLFFSADYSQIELRIMAHLSGDENMMEAFRE 721 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G DI+ T AK ++ I+KV+ QR K + Y G A+ S +Q Sbjct: 722 GHDIHRATAAKIWHEDIEKVTDAQRKKAKQANFGIIYGITTYGLAQRMGIPNSEARELIQ 781 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 + + + S + ++ A+ + Sbjct: 782 DYFHTFPKVKAYMEQAKETARAKGYAETLFHRRRYLPDINSRNATVRGFAERNAINAPIQ 841 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 GT +++K A + + +LQ+ +L +E Sbjct: 842 GTEADIIKVAMVRIWKRFKEEGIRSKMILQVHDELNFSVYPEERE 886 >gi|325105539|ref|YP_004275193.1| DNA polymerase I [Pedobacter saltans DSM 12145] gi|324974387|gb|ADY53371.1| DNA polymerase I [Pedobacter saltans DSM 12145] Length = 931 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 91/609 (14%), Positives = 192/609 (31%), Gaps = 97/609 (15%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDL 57 ++ +D ET G+ A A + ++A+ + L Sbjct: 358 KEVSMDTET--------TGLD--ANDAELVGLSFAYKAREAYYIAVPKHEKGILEFLEVL 407 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 L +E + + N ++ I+ K GI++ + + T + + L+ N Sbjct: 408 RPLLENENIRKIGQNLKYDYIILK-WYGIELKGE-FFDTMLAHYLLDPDTRHNMDVLSEN 465 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + LI + K ++ D + Y D + T +L + Sbjct: 466 YLGYTPI--SITELIGK-GKNQLNMRDIDVAKVTD---------YAAEDADVTLQLQQVF 513 Query: 178 IPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P+ + E L + + G +ID++ +++ + + KL+ I Sbjct: 514 EPMLIEAQAEKLAKEVENPLINVLGDMEKEGVKIDVEQLIRFSRDLQDDIGKLENTIYHK 573 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF +D T + + LA + + Sbjct: 574 AGHRFNIA-SPKQLGEILFDKLQLDPKAKKTKTGQYQTGEDVLLALANKSDIVKDILDFR 632 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L ++ GR+ + + TGR S QN+P + Sbjct: 633 QLQKLKSTYVDALPLMINKKTGRVHTSYN-QAVAATGRLSSNNPNLQNIPIRTEK----- 686 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR I L+ AD + IE R++A I+ ++ + Sbjct: 687 -------------------GREVRKAFIPRDENHILLSADYSQIELRIIAEISKDENMMD 727 Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AF+ G DI+ T AK + ++ V+ +QR K + + Y A + Sbjct: 728 AFSKGLDIHTATAAKVYGVANLEDVTSDQRRNAKAVNFGIIYGQSAFGLSQNLGIPRKEA 787 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 ++ + + K + + + ++ A+ Sbjct: 788 AEIIENYFEQYKGIKNYMSDTMNFARENGYVETIMGRRRYLRDINSANATVRGFAERNAI 847 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + G+A +++K A H+ ++ + + V ++M R Sbjct: 848 NAPIQGSAADMIKIAMLNIHKDLIDRKLQSKMTMQVHDELVFDVLVTEKDIVKEIIMDRM 907 Query: 555 KRDVHIVLP 563 K + +P Sbjct: 908 KNAIKTTVP 916 >gi|154498262|ref|ZP_02036640.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] gi|150272809|gb|EDM99977.1| hypothetical protein BACCAP_02250 [Bacteroides capillosus ATCC 29799] Length = 889 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 91/525 (17%), Positives = 175/525 (33%), Gaps = 77/525 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 +L+ L + H+ L + L + ++ + +A P+ L Sbjct: 370 VLKALFAADIKKNTHDVK---TLLSRLLEEGVEGDGFVFDTAIAAYLLAPTDGSYELEKL 426 Query: 117 N---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 F++ K ++ F + + ++ L R + Sbjct: 427 GITYFNQEFAKAKDTYLAPDAFSPLADQTAVLGGMLSHCALIGALKKVLAPRL--EELGM 484 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + D E L + + G +D + + +++ + +I +L Sbjct: 485 HQLYY---DIELPLCQVLSAMEHAGMLVDRKALSEFGDMLDERIAADQAEIYELAGETF- 540 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + T L LF G+ V ++ T +L D IL + Sbjct: 541 NINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGQHPIIDKILEYRQYTKLKST 600 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L + ++ DGR+ + Q + TGR S QN+P + Sbjct: 601 YVDGLGKVIAPDGRIHTSFQN-TVTATGRLSSTEPNLQNIPVRT---------------- 643 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R +A GK LV AD + IE R+LA IAG++ I+AF GEDI+ Sbjct: 644 --------ELGAELRKMFVAPAGKVLVDADYSQIELRLLAHIAGDEHMIEAFRTGEDIHT 695 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466 T A+ F P+D+V+K R+ K + + Y A + ++++ Sbjct: 696 VTAAQVFGVPVDQVTKHMRSSAKAVNFGIVYGISAFSLSQDIGVPTYEAKEYIEKYFARF 755 Query: 467 KSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + + +S + + A+ + GTA ++ Sbjct: 756 SGVHAYMTDVVNRAKTDGYVSTLFGRRRWLPELKSSNFNTRSFGERVALNMPIQGTAADI 815 Query: 506 VKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISA 540 +K A H +LQ+ +L C +E ++ A Sbjct: 816 MKLAMLHVHSRLREEGLQARLILQVHDEL--IVECPEEEAETVKA 858 Score = 50.9 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 7/65 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYF 642 R++G ++ N+ +Q + DI+ M + G ++L VHDE++ E P+ Sbjct: 795 TRSFGERVALNMPIQGTAADIMKLAMLHVHSRLREEGLQARLILQVHDELIVECPEEEAE 854 Query: 643 SVGTL 647 +V L Sbjct: 855 TVKAL 859 >gi|315187558|gb|EFU21314.1| DNA polymerase I [Spirochaeta thermophila DSM 6578] Length = 897 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 83/562 (14%), Positives = 160/562 (28%), Gaps = 98/562 (17%) Query: 36 AWDDEPVKLWDRTEQS--AMPSDLLQ-----YLRDETVMCVAHNSLFERILFKKTLGIDI 88 A D+ +P+D+++ L + V V N F+ + ++ Sbjct: 351 AVDEGRACYVPLAAPDVRPLPADVVREVLTPLLASQKVSKVGQNLKFDYHVLRRWGVRPE 410 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + + ++ A F + Sbjct: 411 GPFFDTMVAAWLLESDAGRYNLDRLAEKYLGWRTIHYKDVVEKGASFETVPV-------- 462 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRG 198 G Y D + L + L + E L + + + G Sbjct: 463 --------AEAGVYAAEDADIALRLSRVLKERLEAGDLGRVFYEMEMPLLSILARMEEWG 514 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D + + + + ++ +I L + T L+ LF+ G+ V ++ Sbjct: 515 IGLDGEALSAFGRELDERISNIENEIFDLVGHEF-NVGSTKQLQEVLFVERGLPPVKKTK 573 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGA 314 T S+L +L + + ++ L V+ GRL G Sbjct: 574 TGFSTDTSVLEELAAQDPVAAKVLEYRSLTKLKNTYVDVLPGLVNPETGRLHTWFSQVG- 632 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + +R + G Sbjct: 633 TATGRLSSKDPNLQNIPIKT------------------------EEGRRIREAFVPQRGW 668 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 + AD + IE +LA ++G+ +AF GED++ T + F P + V+ EQR I K Sbjct: 669 WFLSADYSQIELVILAHLSGDPALCRAFREGEDVHRATGSLLFGVPPETVTPEQRRIAKT 728 Query: 435 MELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-- 488 + + Y A + + + F + AE+ Sbjct: 729 INFGVIYGMSAFRLSRELGIPRKEAERFINAYFTTYAGVRAFIERTIAEAEEKGYVTTLF 788 Query: 489 -------------------YPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQ 519 AV + G+ +++K A + +LQ Sbjct: 789 GRKRPLPYITSRNKTQKTGAERIAVNTPIQGSGADIIKLAMIDLDAQMRRMGLASRMILQ 848 Query: 520 LWKDLTEGFACVVQEGGSISAR 541 + +L E R Sbjct: 849 VHDELIFEVPPEELEVMKRLVR 870 >gi|210077513|gb|ACJ07021.1| PolI [Thermus sp. Wai28.A1] Length = 833 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 90/493 (18%), Positives = 156/493 (31%), Gaps = 76/493 (15%) Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 LA L L E + + L+A + +P R Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTNPEGVARRYGG---- 398 Query: 157 QLFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 F E + LF+ L P + ER L + + RG R+D+ L+ Sbjct: 399 -EFTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLE 457 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 L + +E ++L+ ++ +L + L LF G+ V +E T K + Sbjct: 458 ALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLEKVLFDELGLTPVGRTEKTGKRSTAQ 516 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + L + L + KL + L V GRL A+ TGR S Sbjct: 517 GALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLS 575 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R +A G L+ AD Sbjct: 576 SSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+DI+ T A F V + R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484 A + ++++ Q+ + + E Sbjct: 672 GMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVP 731 Query: 485 --------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVV 532 +++ A + GTA +L+K A + L + + V Sbjct: 732 DLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEV 791 Query: 533 QEGGSISARRVAN 545 E + A+ + Sbjct: 792 PEDRAEEAKALVK 804 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R Y + G Y+ S++ R ++ N+ VQ + D Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 ++ M G ++L VHDE+V E P+ L +M Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807 >gi|307692866|ref|ZP_07635103.1| DNA polymerase I [Ruminococcaceae bacterium D16] Length = 900 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 93/503 (18%), Positives = 169/503 (33%), Gaps = 76/503 (15%) Query: 56 DLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +LQ L + V H + E+ L + I + + LA P+ Sbjct: 376 QVLQALFAPDIQKVVHGAKELEKELMDQG----IEPQGIRFDTELAAYLLSPTDGSYDLE 431 Query: 115 ALN---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L +++ K +E G+ DS + F +C ++A Sbjct: 432 KLGITYYNQEFAKAKE------YLTPGAFDSLFSLDSEGQSAGPMGAFLSHCAL-IDALY 484 Query: 172 E-LFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 E L +RL L + E L + + G +D + E +AQ +K I Sbjct: 485 ETLSQRLEELKLTQLYGEIELPLCPVLAEMERSGVLVDRKALAAFGEALAQGIEKDQALI 544 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 +L + T L LF G+ V ++ T +L + IL+ Sbjct: 545 YELAGEEF-NINSTQQLGKILFDKLGLPPVKKTKTGYSTNAEVLEKLRGKHPIIEAILDY 603 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + L + ++ DGR+ Q + TGR S QN+P + Sbjct: 604 RQLTKLKSTYADGLGKVIAPDGRIHTCFQN-TVTATGRLSSTEPNLQNIPIRT------- 655 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A+ GK LV AD + IE R+LA +AG+ I+ Sbjct: 656 -----------------QLGAQLREMFVAAPGKVLVDADYSQIELRLLAHMAGDQAMIEG 698 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGL 457 F +G DI+ T ++ F D+V+ + R K + + Y + Sbjct: 699 FHSGADIHTITASQVFGVTPDQVTPQMRRSAKAVNFGIVYGISPFSLSQDIGVSVQQAKE 758 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + ++ + + D + +S + + A+ Sbjct: 759 YMDKYFAHYSGVRAYMDGVVEQGKQDGYVATLFGRRRWLPELKSSNFNTRSFGERVALNM 818 Query: 497 KLIGTACELVKKAWRAKHQGVLQ 519 + GTA +++K A +L+ Sbjct: 819 PIQGTAADIIKLAMIRVRDRLLR 841 Score = 50.9 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642 R++G ++ N+ +Q + DI+ M +VL VHDE++ E P+ Sbjct: 807 TRSFGERVALNMPIQGTAADIIKLAMIRVRDRLLREGLEGRLVLQVHDELIVECPEAEAE 866 Query: 643 SVGTLCS 649 +V L Sbjct: 867 TVCRLVK 873 >gi|51891986|ref|YP_074677.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] gi|51855675|dbj|BAD39833.1| DNA polymerase I [Symbiobacterium thermophilum IAM 14863] Length = 874 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 83/456 (18%), Positives = 156/456 (34%), Gaps = 80/456 (17%) Query: 151 NHVQAWQLFG---EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 + W R +EA + E L + + G ID + Sbjct: 433 DTPDLWATRASVLPELHRRMEAELAAQGVDRLYREVELPLMPILAEMEAVGVGIDPAALH 492 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ + + ++ ++I +L + L LF G+ ++ Sbjct: 493 EMSVELERRILQVSQEIYELAGMQF-NISSPKQLGDVLFGKLGLPSGKKTKSG-GYSTDA 550 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +LA + + KL + L + ++ DGR+ T + TGR S Sbjct: 551 EVLEELAAAYPIAARVLDYRTLTKLKGTYVDALGQLIARDGRIHTTFA-QTVAETGRLSS 609 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R +A G L+ AD + Sbjct: 610 KDPNLQNIPIR------------------------IEEGRRIRKAFVARPGCVLLSADYS 645 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RV+A +G+ +AF + +DI+ T A+ F P+D+V+ E R K + L Y Sbjct: 646 QIELRVVAHFSGDPALREAFLHDQDIHTRTAAEVFGVPMDQVTPEMRRQAKAVNFGLIYG 705 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------- 482 G A+ + ++ + + + ++AE+ Sbjct: 706 QTDFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDGRRRPLPE 765 Query: 483 -----LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEG 527 ++ A+ + GTA +L+K+A A + +LQ+ +L Sbjct: 766 INHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRAMREEGLSARMILQVHDEL--V 823 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 F C V E V + RLV R + + + +P Sbjct: 824 FECPVGE--------VDRLARLVRREMEGAMKLDVP 851 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 11/194 (5%) Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 ++ + F L QD + A ++ G + V R + + V Sbjct: 648 ELRVVAHFSGDPALREAFLHDQDIHTRTA--AEVFGVPMDQVTPEMRRQAKAVNFGLIYG 705 Query: 525 TEGFACVVQEGGS-ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNT 582 F G S AR +R + +R Y G L Sbjct: 706 QTDFGLARSVGISRAEARAFIETYFAKFAGVRRYMEEKKAEAREKGYVTTLDGRRRPLPE 765 Query: 583 ATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635 ++ R ++ N +Q + D++ M + ++L VHDE+V E Sbjct: 766 INHRVFTIRQNAERMAINTPIQGTAADLMKRAMIAVRRAMREEGLSARMILQVHDELVFE 825 Query: 636 TPDTPYFSVGTLCS 649 P + L Sbjct: 826 CPVGEVDRLARLVR 839 >gi|281424796|ref|ZP_06255709.1| DNA polymerase type I [Prevotella oris F0302] gi|281401166|gb|EFB31997.1| DNA polymerase type I [Prevotella oris F0302] Length = 920 Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats. Identities = 92/597 (15%), Positives = 184/597 (30%), Gaps = 120/597 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 L +D ET S + A + +A ++ A+P+D + L Sbjct: 348 RILSLDTETTSTNAI----------DAELVGLCFAVEEHKAFYV------AIPNDREEAL 391 Query: 62 ----------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 D +++ + N ++ + K G+ + K + ++LA P N Sbjct: 392 QYVNIFKPVYEDPSILKIGQNLKYDYEVLKNY-GVTLGGK--MFDTMLAHYVIQPELHHN 448 Query: 112 ACLALNFSEHLTKMEEGK--ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 +E L + LI K D EY D + Sbjct: 449 MD---YMAETLLHYKTIHIDELIGPRGKHQKSMRDLDPKDV---------YEYAAEDADI 496 Query: 170 TRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T +L L P + E L + + G R+D D + + + + Sbjct: 497 TLQLKNVLEPKLKETGTENLFWNIEMPLVPVLADMELNGVRLDTDALHDTSMIFTERMNR 556 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ I + + + LF I T + + + + L + Sbjct: 557 LEQQIYEKAGETF-NISSPKQVGDILFGKMQIMEKPKKTKTGQYVTNEEVLQSLRAKHPI 615 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + KL L + ++ G + + + TGR S QN+P + Sbjct: 616 VADILDYRGLKKLLGTYVEALPKLINKRTGHIHTSFN-QALTATGRLSSSDPNLQNIPVR 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R C + AD + IE R++A ++ Sbjct: 675 SED------------------------GKEIRKCFVPEQDCMFFSADYSQIELRIMAHLS 710 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 G++ I+AF G DI+ T AK ++ I V+ E+R K + Y G A+ + Sbjct: 711 GDENMIEAFRQGFDIHAATAAKIWHKDIADVTSEERKKAKQANFGIIYGITTYGLAQRME 770 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQ 488 ++ + + + + E+ + ++ Sbjct: 771 IDNREARELIEGYFATFPKVRAYMEQAKEEARRKGYAETLFGRRRYLPDITSKNGTVRGF 830 Query: 489 YPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535 A+ + G+ +++K A + + +LQ+ +L +E Sbjct: 831 AERNAINAPIQGSEADIIKIAMIRIWQRFRAENIRSKMILQVHDELNFSVYPDEKER 887 >gi|319407881|emb|CBI81533.1| DNA polymerase I [Bartonella schoenbuchensis R1] Length = 968 Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats. Identities = 84/536 (15%), Positives = 178/536 (33%), Gaps = 83/536 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L D+ V+ + +N + ++ K+ I I A G + ++ Sbjct: 442 LKPILEDQAVLKIGYNMKYNWLIMKQYA-IVTQPFDDIMLISYALDAGTSTHNRDILSER 500 Query: 117 NFSEHLTKMEE---GKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRDVEATR 171 ++ I F + + + ++ WQ+ + Sbjct: 501 WLKHKPIAYKDLTHNGKKITSFAQVDLKQATFYAAEGADITLRLWQVLKPQLV--AQGVT 558 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++++RL +R L + + +RG +D ++ +L +AQ L+E+I +L Sbjct: 559 KIYERL------DRPLIEVLAKMEERGILVDRQILSRLSCELAQAALSLEEEIYQLVGER 612 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290 + L LF G+ ++ + S + +LA + L R + Sbjct: 613 FNIA-SPKQLSDILFGKMGLPGGVKTKNG-QWSTSAQILEELAAEGHTLPRKIVDWRQLT 670 Query: 291 KL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + GR+ + TGR S QN+P + Sbjct: 671 KLKSTYTDALPYYILPETGRVHTNYSLAT-TSTGRLSSSEPNLQNIPIRT---------- 719 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R+ IA G L+ AD + IE R+LA IA +AFA Sbjct: 720 --------------PEGRKIRTAFIAPKGCVLLSADYSQIELRILAHIANITALKEAFAQ 765 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 +DI+ T ++ F ++ + + R K + + Y G A + + Sbjct: 766 DQDIHAITASQIFGVAVEGMPSDIRRRAKAINFGIIYGISAFGLANQLSISRNEASRYID 825 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + + + + + + ++ + ++ A+ + Sbjct: 826 IYFERFPGIKDYMETTKSFARQHGYVETIFGRRIHYPEIKATNSQIRTFNERAAINAPIQ 885 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 G+A +++++A + +LQ+ +L E + +V Sbjct: 886 GSAADIIRRAMIQMEGALKKEKLSAKMLLQVHDELIFEVPETESEKTKVLVTKVME 941 Score = 44.0 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 17/91 (18%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN--- 620 RR+ Y ++K S + RT+ + N +Q + DI+ M Sbjct: 856 GRRIHYPEIKATNS----------QIRTFNERAAINAPIQGSAADIIRRAMIQMEGALKK 905 Query: 621 ---GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 ++L VHDE++ E P+T L Sbjct: 906 EKLSAKMLLQVHDELIFEVPETESEKTKVLV 936 >gi|38146983|gb|AAR11876.1| DNA polymerase I [Thermus filiformis] Length = 833 Score = 253 bits (645), Expect = 8e-65, Method: Composition-based stats. Identities = 90/493 (18%), Positives = 156/493 (31%), Gaps = 76/493 (15%) Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 LA L L E + + L+A + +P R Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTNPEGVARRYGG---- 398 Query: 157 QLFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 F E + LF+ L P + ER L + + RG R+D+ L+ Sbjct: 399 -EFTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLE 457 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 L + +E ++L+ ++ +L + L LF G+ V +E T K + Sbjct: 458 ALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQ 516 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + L + L + KL + L V GRL A+ TGR S Sbjct: 517 GALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLS 575 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R +A G L+ AD Sbjct: 576 SSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+DI+ T A F V + R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484 A + ++++ Q+ + + E Sbjct: 672 GMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVP 731 Query: 485 --------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVV 532 +++ A + GTA +L+K A + L + + V Sbjct: 732 DLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEV 791 Query: 533 QEGGSISARRVAN 545 E + A+ + Sbjct: 792 PEDRAEEAKALVK 804 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R Y + G Y+ S++ R ++ N+ VQ + D Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 ++ M G ++L VHDE+V E P+ L +M Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807 >gi|107026837|ref|YP_624348.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116691969|ref|YP_837502.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|170736037|ref|YP_001777297.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] gi|105896211|gb|ABF79375.1| DNA polymerase I [Burkholderia cenocepacia AU 1054] gi|116649969|gb|ABK10609.1| DNA polymerase I [Burkholderia cenocepacia HI2424] gi|169818225|gb|ACA92807.1| DNA polymerase I [Burkholderia cenocepacia MC0-3] Length = 917 Score = 253 bits (645), Expect = 9e-65, Method: Composition-based stats. Identities = 101/566 (17%), Positives = 183/566 (32%), Gaps = 110/566 (19%) Query: 46 DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR 101 D EQ + L + L V + ++ + DI T + + Sbjct: 381 DMPEQLPLDEVLARLKPWLESADRKKVGQHLKYDAQVLANY---DIALNGIEHDTLLESY 437 Query: 102 TNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQ 157 + LAL K E+ GK F + ++ Sbjct: 438 VVESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----- 492 Query: 158 LFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLV 206 T +L L P + E + L+ + + G ID + Sbjct: 493 -----------ITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARL 541 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 IA +L+ + +L G + + F + +V + S Sbjct: 542 HAQSTEIATRLIELEGEAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-D 599 Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRW 320 + +LA+D L +L + KL + L V+ GR+ + TGR Sbjct: 600 EEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYA-QAVAVTGRL 658 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 + QN+P + +R IAS G ++V AD Sbjct: 659 ASNDPNLQNIPVRT------------------------AEGRRIREAFIASPGHRIVSAD 694 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A I+G+ ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Sbjct: 695 YSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLI 754 Query: 441 YQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM 485 Y A L + ++ + + + +A + LW+ Sbjct: 755 YGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWL 814 Query: 486 ----------QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK--- 522 + A+ + GTA +L+K + A + ++Q+ Sbjct: 815 PEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDGWLTRDQLASRMIMQVHDELV 874 Query: 523 -DLTEGFACVVQEGGSISARRVANVP 547 ++ EG +V+E VA + Sbjct: 875 LEVPEGELSLVREKLPEMMCGVAKLK 900 >gi|282891035|ref|ZP_06299540.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499028|gb|EFB41342.1| hypothetical protein pah_c045o043 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 896 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 95/513 (18%), Positives = 165/513 (32%), Gaps = 91/513 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + + + HN ++ + + + I I S + + SL+ Sbjct: 373 EGVKPLFENSAIGFYGHNVKYDWHVLQNEGIQIQNICFDTILASYILNAHSRQHSLEVLA 432 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA----WQLFGEYCKRDVEA 169 L F K +I N + + EYC DV+ Sbjct: 433 LE------------------YFGKVTIPISELIGKGKNVLSMRDVPIERVTEYCCEDVDF 474 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L + L E L ++ + RG +D+ + +L + + QE K Sbjct: 475 TCRLKEVLEKQLKERDLLNLYHQIELPLLVVLAKMERRGIYVDIPYLEQLSKELTQELKT 534 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSH-SNITQLAK 275 L E I + + + LF+ GI + T +L N LA Sbjct: 535 LQESIYTMAGEEF-NLNSPKQVSELLFIKLGIPAPKKTATGHSTSAEVLEFLKNDYPLAG 593 Query: 276 DLILNRLASSGSAILKLNTLS-EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ RL + ++ L + + R+ T A+ TGR S QN+P + Sbjct: 594 KILEYRLLEKLRST-YVDALPSQVIPRTHRIHSTFNQSVAA-TGRLSSQDPNLQNIPIRT 651 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393 +R G + AD + IE R+LA ++ Sbjct: 652 ------------------------EEGRKIRGAFRPEKEGWSFLSADYSQIELRLLAHLS 687 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 + + AF N EDI+ T A F P+++VSKEQR K + + Y G A+ Sbjct: 688 QDPVLMAAFQNNEDIHTYTAASMFEIPLEQVSKEQRYQAKAINFGIIYGQQAFGLARELG 747 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + Q + D + S ++ ++ Sbjct: 748 IEVKQASKFITMYFQRYPKIKEYLDQSKENARATGKSVTLTGRERIIPEILSKNMQIRAA 807 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 AV L GTA +L+K A + + + Sbjct: 808 AERLAVNTPLQGTAADLIKMAMLKMDEEIEKQH 840 >gi|210077509|gb|ACJ07019.1| PolI [Thermus sp. Tp10.A2] Length = 833 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 90/493 (18%), Positives = 156/493 (31%), Gaps = 76/493 (15%) Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 LA L L E + + L+A + +P R Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTNPEGVARRYGG---- 398 Query: 157 QLFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 F E + LF+ L P + ER L + + RG R+D+ L+ Sbjct: 399 -EFTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLE 457 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 L + +E ++L+ ++ +L + L LF G+ V +E T K + Sbjct: 458 ALSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQ 516 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + L + L + KL + L V GRL A+ TGR S Sbjct: 517 GALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLS 575 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R +A G L+ AD Sbjct: 576 SSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADY 611 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++G++ + F G+DI+ T A F V + R K + + Y Sbjct: 612 SQIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLY 671 Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484 A + ++++ Q+ + + E Sbjct: 672 GMSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVP 731 Query: 485 --------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVV 532 +++ A + GTA +L+K A + L + + V Sbjct: 732 DLASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEV 791 Query: 533 QEGGSISARRVAN 545 E + A+ + Sbjct: 792 PEDRAEEAKALVK 804 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R Y + G Y+ S++ R ++ N+ VQ + D Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 ++ M G ++L VHDE+V E P+ L +M Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807 >gi|316936191|ref|YP_004111173.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] gi|315603905|gb|ADU46440.1| DNA polymerase I [Rhodopseudomonas palustris DX-1] Length = 1027 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 100/535 (18%), Positives = 179/535 (33%), Gaps = 81/535 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L + V F +L + G+ + + A G S +A Sbjct: 499 DALKPVLESAGIAKVGFAIKFAAVLLAQH-GLTLRNIDDPQLMSYALDAGRGSHGLDALS 557 Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE-A 169 N L + E GK I G + Y RA+ + +L R V + Sbjct: 558 ESNLGHTLHTLTELTGTGKNKIGLDQVGIDRATAYAAERAD--VSLRLARVLKPRLVAGS 615 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +++ L ER L + + RG ID ++ +L AQ +++ +I +L Sbjct: 616 MTAVYETL------ERPLVGVLARMERRGISIDRQVLSRLSSDFAQTAARIEAEIRELAG 669 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288 I + L LF G+ ++ T S + +LA+ + Sbjct: 670 EDI-NIGSPKQLGDILFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHEFPKKILEWRQ 727 Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KL + L V T A+ TGR S QN+P + Sbjct: 728 VSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------- 780 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A+ G KLV AD + IE R+L+ +A KAF Sbjct: 781 -----------------GRKIRRAFVATPGHKLVSADYSQIELRLLSEVADVPALRKAFQ 823 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +G DI+ T ++ F P++ + E R K + + Y G A G + Sbjct: 824 DGIDIHAMTASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYI 883 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + ++ + ++ A+ +L Sbjct: 884 KRYFERFPGIRAYMDETRDFCRAHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINARL 943 Query: 499 IGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 G+A +++++A + Q +LQ+ +L E R V Sbjct: 944 QGSAADIIRRAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLPVVRSV 998 >gi|116620469|ref|YP_822625.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] gi|116223631|gb|ABJ82340.1| DNA polymerase I [Candidatus Solibacter usitatus Ellin6076] Length = 865 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 81/417 (19%), Positives = 137/417 (32%), Gaps = 67/417 (16%) Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLW 188 D H + G ++ + T EL+++L P + E L Sbjct: 411 DADPGGCGLENQAHRRLDLKLGGAAEQHADITLELYEQLAPAIDGRGLRKLYDEIELPLT 470 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G RID + +L L+ + L +I L + L LF Sbjct: 471 RVLARMERTGIRIDGAELKRLSVLMESQISGLTAEIHALAGKPF-NISSPQQLGKVLFED 529 Query: 249 TGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-D 302 + + + +LA + + R + KL + L + Sbjct: 530 LNLPAPVKYGKGKTISTAADVLDELAAEHEIVRKVLEYRQLTKLKGTYVDALPALIDPAT 589 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GRL + GA+ TGR S QN+P + Sbjct: 590 GRLHTSFNQTGAA-TGRLSSSNPNLQNIPIRT------------------------SLGR 624 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ + +G KL+VAD + IE R+LA ++G++ ++AF GEDI+ T A+ P Sbjct: 625 EIRAAFVPRDGWKLLVADYSQIELRLLAHMSGDELLVQAFREGEDIHTRTAAEVMGVPPL 684 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ E R K + + Y G A + ++ + F + A Sbjct: 685 MVTPEARRDAKAVNFGIVYGISAFGLAAQLGIGRAEAERYIKNYFARYVGVKRFIEETIA 744 Query: 479 E---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 E + + AV L GTA +L+K A Sbjct: 745 EVRKTGVTKTLFGRERPIPEINGRNPNARGFAERTAVNSPLQGTAADLIKLAMVRID 801 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 598 TENIVQAISRDILCEGMKNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGTLCS 649 + +Q + D++ M G+ + VHDE+V E P V + Sbjct: 781 VNSPLQGTAADLIKLAMVRIDAALAAGGFQAAMLLQVHDELVFECPPEELDEVSRMVK 838 >gi|206562759|ref|YP_002233522.1| DNA polymerase I [Burkholderia cenocepacia J2315] gi|198038799|emb|CAR54761.1| DNA polymerase I [Burkholderia cenocepacia J2315] Length = 917 Score = 253 bits (645), Expect = 1e-64, Method: Composition-based stats. Identities = 100/566 (17%), Positives = 182/566 (32%), Gaps = 110/566 (19%) Query: 46 DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLAR 101 D EQ + L + L V + ++ + DI T + + Sbjct: 381 DMPEQLPLDEVLTRLKPWLESADRKKVGQHLKYDAQVLANY---DIELNGIEHDTLLESY 437 Query: 102 TNGLPSSLKNACLALN-FSEHLTKMEE--GKALIAR-FCKGSIDSPPYDCTRANHVQAWQ 157 + LAL K E+ GK F + ++ Sbjct: 438 VVESHRTHDMDSLALRHLGVKTIKYEDVAGKGAKQIGFDEVALAQAAEYAAEDAD----- 492 Query: 158 LFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLV 206 T +L L P + E + L+ + + G ID + Sbjct: 493 -----------ITLQLHHALYPQVAREPGLERVYREIEMPVSLVLRKMERTGVLIDDARL 541 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 IA +L+ +L G + + F + +V + S Sbjct: 542 HAQSTEIATRLIELEGQAYELAGGEF-NLGSPKQIGQIFFEKLQLPVVKKTPSGAPST-D 599 Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRW 320 + +LA+D L +L + KL + L V+ GR+ + TGR Sbjct: 600 EEVLQKLAEDYPLPKLLLEHRGLSKLKSTYTDKLPRMVNPTTGRVHTNYA-QAVAVTGRL 658 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 + QN+P + +R IA+ G ++V AD Sbjct: 659 ASNDPNLQNIPVRT------------------------AEGRRIREAFIAAPGHRIVSAD 694 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A I+G+ ++AF+ GEDI+ T A+ F +V+ +QR I KV+ L Sbjct: 695 YSQIELRIMAHISGDASLLRAFSQGEDIHRATAAEVFGVTPLEVNSDQRRIAKVINFGLI 754 Query: 441 YQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWM 485 Y A L + ++ + + + +A + LW+ Sbjct: 755 YGMSAFGLASNLGITRDAAKLYIDRYFARYPGVAQYMEDTRATAKEKGYVETVFGRRLWL 814 Query: 486 ----------QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWK--- 522 + A+ + GTA +L+K + R + ++Q+ Sbjct: 815 PEINGGNGPRRQAAERAAINAPMQGTAADLIKLSMIAVDDWLTRDRLASRMIMQVHDELV 874 Query: 523 -DLTEGFACVVQEGGSISARRVANVP 547 ++ EG +V+E VA + Sbjct: 875 LEVPEGELSLVREKLPEMMCGVAKLK 900 >gi|228470367|ref|ZP_04055270.1| DNA polymerase type I [Porphyromonas uenonis 60-3] gi|228307949|gb|EEK16832.1| DNA polymerase type I [Porphyromonas uenonis 60-3] Length = 948 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 99/568 (17%), Positives = 193/568 (33%), Gaps = 73/568 (12%) Query: 32 LCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 LCA + L + E++ + S L + ++DE V+ VAHN+ F+ + + +P Sbjct: 380 LCADEKQAYFIPLPESAEEATHILSPLKELMQDERVLKVAHNAKFDLEVLTRY---GLPE 436 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TR 149 R + ++LA ++ + + E L+ D P + Sbjct: 437 ARPLYDTMLAHYL------------IDADQGHSLDELAGGLLRYDTIRYKDLSPLEIFAL 484 Query: 150 ANHVQAWQLFGEYCKRDVEATRELF----KRLIP-----LSDGERDLWLLDQTINDRGYR 200 V +L +Y D T L+ K+L P L++ E L + + RG Sbjct: 485 RTDVDP-KLLCDYASEDAYVTLRLYQALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIV 543 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEG 259 +D++ + + ++ + + +L+++I + + + LF I Sbjct: 544 LDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELQIMEKPRKTK 603 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGA 314 T + + + L + L KL + L + DG+L + Sbjct: 604 TGSYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAV 662 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + L + A I G Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACAPVDHTHEKPI----GA 718 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + +E RV+A ++ + I +F +G+DI+ T AK F ++V+ R+ K Sbjct: 719 VLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKT 778 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-----------WEQAE 479 + Y G ++ ++++ F + E A Sbjct: 779 ANFGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAF 838 Query: 480 SHHLWMQD----------QYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQ 519 +++ A+ + GTA +++K A + VLQ Sbjct: 839 GRRRQLRNLRTARGAQRGNAERNAINAPIQGTAADIIKIAMIRVEEELTKQQLRSYLVLQ 898 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVP 547 + +L E + R Sbjct: 899 VHDELVLNVYLDELERVTALVREAMECA 926 >gi|303248854|ref|ZP_07335103.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] gi|302489723|gb|EFL49656.1| DNA polymerase I [Desulfovibrio fructosovorans JJ] Length = 874 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 110/585 (18%), Positives = 185/585 (31%), Gaps = 126/585 (21%) Query: 95 CTSVLARTNGLPSSL--KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 ++ A LP SL A + + F ++D+ Sbjct: 392 MLAMDAAFAALPLSLWFDLGLAAYLLDPEQRNYGFPRLRDSLFADPTVDASAVSPDDTAR 451 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 A + D +L +RL E L + + G +DL + Sbjct: 452 AAALLAEVYTARLDTAGLTDLVERL------ELPLIPVLLDMERAGIGVDLRSLAAFGAE 505 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHS 268 +A + +L++++ L + R + L LF G+ + G T + L Sbjct: 506 VATDLTRLEKELHTLAGHPF-NPRSSQQLGEILFTEMGLTPKGKTPGGAASTSQDALERL 564 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + D IL L+ L + +DGR+ TL A+ TGR S Q Sbjct: 565 AGSNPLVDRILEFRKLEKLRSTYLDPLPKLADADGRIHTTLNNM-ATATGRLSSSNPNLQ 623 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + G +R C +A GK LV AD + IE RV Sbjct: 624 NIPIR------------------------GPLGRRMRECFVAGPGKTLVAADYSQIELRV 659 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA ++GE + AFA G DI+ T + F+ P ++ ++R K + L Y G + Sbjct: 660 LAHLSGEPALLSAFAAGADIHARTASLLFDKPEAEIGPDERRQAKTINFGLLYGMGPQ-- 717 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 ++ G+ L + FE + + + + L Sbjct: 718 -KLSRDLGIKLDAAKAFI--AKYFERLSGLSAFYDNIVESAKTQGYVTTLA--------- 765 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 G +L D+ ++ + + R+ Sbjct: 766 -------GRRRLLPDIE-----------------------------SKNSQLASQARRQA 789 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGY 622 + +VQ + DI+ M A K G Sbjct: 790 I-----------------------------NTVVQGGAADIIKMAMLAAHKDADLKRAGA 820 Query: 623 DIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAE 666 +VL +HDE++ ETP + L LM A +PL + Sbjct: 821 VMVLQIHDELLLETPMDTADAAGKRLSDLMCGVIKLA--VPLVVD 863 >gi|163845937|ref|YP_001633981.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222523662|ref|YP_002568132.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] gi|6015002|sp|O08307|DPO1_CHLAA RecName: Full=DNA polymerase I; Short=POL I gi|1913934|emb|CAA72997.1| DNA-directed DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|163667226|gb|ABY33592.1| DNA polymerase I [Chloroflexus aurantiacus J-10-fl] gi|222447541|gb|ACM51807.1| DNA polymerase I [Chloroflexus sp. Y-400-fl] Length = 942 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 101/507 (19%), Positives = 168/507 (33%), Gaps = 78/507 (15%) Query: 56 DLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ L + AHN+ F+ + GI + + T + A G LK+ Sbjct: 406 EVVTALAPFFANPQQPKFAHNAKFDMEVLA-GAGIKVSGLAF-DTMIAAAMLGKRQGLKD 463 Query: 112 ACLA-LNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L E + G I F + ++ A E +R Sbjct: 464 LAFYELKLPEPPTTIEDLIGRGNKQI-SFAEVPVEQAA--PYAAADALYTLRLTERLQRQ 520 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +EA L E L + + G R+D + + +L AQ L E I + Sbjct: 521 LEAEPALHDLYY---RVELPLIEVLTDMELTGIRLDQEYLRELGRHFAQRIADLVERIYQ 577 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS---------ILSHSNITQLAKDL 277 G + L LF GID LKS + S + +A D+ Sbjct: 578 QAGGPF-NINSGQQLNDVLFGRLGIDPRAHGLSKLKSGGYSITAEVLEELSQLYPIAADI 636 Query: 278 ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + R + ++ L + V+ GR+ + GA+ TGR S QN+P + Sbjct: 637 LTYRQ-LTKLKSTYIDALPDLVNPRTGRIHTSYNQLGAA-TGRLSSNNPNLQNIPVRT-- 692 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R +A G + V AD + IE RVLA ++G++ Sbjct: 693 ----------------------EEGREIRRAFVAEPGWRFVAADYSQIELRVLAHMSGDE 730 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I AF G DI+ T ++ F V K QR + K + + Y G A+ Sbjct: 731 NLIAAFQQGLDIHAATASRLFGVEPTAVDKNQRRVAKTVVFGVIYGISAFGLAQRLGIER 790 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH-HLWMQDQYPE-------------------F 492 + + D H ++Q + Sbjct: 791 DLARQLIDNLFAQFPGIRRYIDQTLEFGRQHGYVQTLFGRRRVMEDLRASGARRAAAERE 850 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +L+K A H+ + + Sbjct: 851 AINAPIQGTAADLMKMAMVNVHRALRE 877 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTL 647 +Q + D++ M N + G ++L VHDE+++E P+ L Sbjct: 856 IQGTAADLMKMAMVNVHRALREQGLRTRLLLQVHDELIAEAPEDEVEPAARL 907 >gi|220917745|ref|YP_002493049.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] gi|219955599|gb|ACL65983.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-1] Length = 897 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 85/421 (20%), Positives = 155/421 (36%), Gaps = 60/421 (14%) Query: 175 KRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +RL PL + ER L + + G +D + + + + L+ I Sbjct: 490 ERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPF- 548 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + T L LF+ + +V + + +LA+ L RL ++ KL Sbjct: 549 NVASTRELAQVLFVELELPVVKRLK--TGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLK 606 Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + V DGR+ T GA+ TGR S QN+P + Sbjct: 607 GTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSSDPNLQNIPVRT------------- 652 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R +A G +L+ AD + IE R+LA + + ++AF + ED Sbjct: 653 -----------ELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRED 701 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 ++ T A+ F P ++V+ +QR I KV+ + Y G ++ S + ++ Sbjct: 702 VHTRTAAETFGVPPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYF 761 Query: 464 QNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTA 502 + +W E + + +++ A+ + GTA Sbjct: 762 TRYAGVRRYIEWAVEEARAKGESRTLFGRARTMPEIGARNPALRNAAERTAINTPIQGTA 821 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 ++VK A H + Q + + + R +A V LV R + + + Sbjct: 822 ADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEALVRREMEGAARLKV 881 Query: 563 P 563 P Sbjct: 882 P 882 Score = 46.7 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 21/80 (26%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS------ 649 +Q + DI+ M + ++L VHDE+V E P+ V L Sbjct: 817 IQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELAPVEALVRREMEGA 876 Query: 650 ---------LMTKNPSWAKG 660 + +WA+G Sbjct: 877 ARLKVPLEVQVGHGQTWAEG 896 >gi|303237984|ref|ZP_07324527.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] gi|302481774|gb|EFL44826.1| DNA-directed DNA polymerase [Prevotella disiens FB035-09AN] Length = 920 Score = 252 bits (644), Expect = 1e-64, Method: Composition-based stats. Identities = 93/589 (15%), Positives = 188/589 (31%), Gaps = 110/589 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQY 60 L +D ET S A A + +++ +++ V + E++ ++ + Sbjct: 350 LSLDTETTS-VD---------AIDAELVGLSFSVEEKEAFYVAISPNREEALNMVNIFKP 399 Query: 61 L-RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLAL 116 L +E ++ V N ++ + KK GI + K + +++A L ++ L Sbjct: 400 LYENEEILKVGQNIKYDYEVLKKY-GITLKGK--LFDTMIAHYLIQPELHHNMDYMAETL 456 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + +E+ + K D P + + Y D + T L Sbjct: 457 -LNYQTVHIEDIIGPKGKKQKNMRDLAPAEVSD------------YACEDADITLRLKNA 503 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L P + E L + + G R+D + + + + + K + +I + Sbjct: 504 LEPKLKEVNAESLFWEIEMPLVRVLADMELHGIRLDTEALEETSRIFTERMNKYEAEIYE 563 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + + LF I T + + S + L + Sbjct: 564 LAGETF-NISSPKQVGEILFGKLQIMEKPKKTKTGQFVTSEEVLISLQSKHPIVEKILEY 622 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 I KL + L + V G + + + TGR S QN+P + Sbjct: 623 RGIKKLLSTYIDALPKLVKPQTGHIHTSFN-QALTATGRLSSSDPNLQNIPVRTDD---- 677 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R C I AD + IE R++A ++ ++ ++ Sbjct: 678 --------------------GKEIRKCFIPEPDCLFFSADYSQIELRIMAHLSEDENMME 717 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T AK ++ ++ V+ QR K + Y G A+ Sbjct: 718 AFRKGHDIHRATAAKIWHEDMENVTDAQRKKAKQANFGIIYGITTYGLAQRMDIPNGEAK 777 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + + + + + S + ++ A+ Sbjct: 778 ELIADYFKTFPKVQAYMEEAKEVARRKGYAETIFHRRRYLADINSRNATVRGFAERNAIN 837 Query: 496 DKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQE 534 + G+ +++K A HQ +LQ+ +L +E Sbjct: 838 APIQGSEADIIKVAMVNIHQRFEREQIRSKMILQVHDELNFSVYPEEKE 886 >gi|163786572|ref|ZP_02181020.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] gi|159878432|gb|EDP72488.1| DNA polymerase I [Flavobacteriales bacterium ALC-1] Length = 948 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 104/612 (16%), Positives = 199/612 (32%), Gaps = 105/612 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---- 62 D ET PL A + A++W+ E +L++ LR Sbjct: 380 DTETTGLNPLT----------AELVGIAFSWETGKGFYVPFPEDKNEAQELIEVLRPFFE 429 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121 ++ + + N ++ + K ++ K + ++LA LA + + Sbjct: 430 NDNIEKIGQNLKYDIKVLAKY---NVEVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNY 486 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 LI + K + + EY D + T +L + Sbjct: 487 TPI--SITELIGKKGKNQLSMREVPLDKQT---------EYAVEDADITLQLKEHFEKEL 535 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +D E L + + G +D D + L E + + L++ I + Sbjct: 536 GEANTQKLFNDIELPLLRVLAAMELEGINLDKDFLNSLSEELNTDIANLEKSIYEAAGEE 595 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L + LF + T + + ++ LAKD + + + K Sbjct: 596 FNIA-SPKQLGVILFEKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHKIIQQVLDFRGLSK 654 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L V GR+ + TGR S QN+P + Sbjct: 655 LKSTYVDALPLQVDESTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER--------- 704 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR + L+ AD + IE R++A ++ E+ I+AF N Sbjct: 705 ---------------GRQVRKAFVPRDENHILLAADYSQIELRIIAALSKEETMIEAFKN 749 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 GEDI+ +T +K FN PI +V++EQR+ K + + Y G + S ++ Sbjct: 750 GEDIHASTASKVFNVPITEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRSEAKELIE 809 Query: 461 QFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLI 499 + + + S + ++ AV + Sbjct: 810 TYYATYPKLRAYMSEQVDFARDNGYVQTVLGRRRYLKDINSRNAVVRGAAERNAVNAPIQ 869 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G+A +++K A ++K L G + + V +V + + K + Sbjct: 870 GSAADIIKIAMIN-------IYKKLQTGAYKT-KMLLQVHDELVFDVYKPELEGLKNLIK 921 Query: 560 IVLPSSRRLVYS 571 + ++ L Sbjct: 922 TEMENAYELSVP 933 >gi|257454649|ref|ZP_05619905.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] gi|257447959|gb|EEV22946.1| DNA polymerase I [Enhydrobacter aerosaccus SK60] Length = 948 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 98/617 (15%), Positives = 197/617 (31%), Gaps = 109/617 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWD--------RT 48 ID ET + A + ++A PV D T Sbjct: 358 KHFVIDTETT-DVNW---------QHAELVGLSFALQSHEAYYVPVAHVDEMGNRIEQLT 407 Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLART--NGL 105 + + + L L++ + + + ++ + + + W ++LA N + Sbjct: 408 REDVL-AQLKPILQNPQIGKIGQHLKYDAHILANYHINLINEPSNWAMDTMLASYVINAV 466 Query: 106 PSSLKNACLALNFSEHLT---KMEEGKALIA-RFCKGSID-SPPYDCTRANHVQAWQLFG 160 + LA ++ T + GK F K + + Y C A+ +QLF Sbjct: 467 ATRHGMDDLARHYLHTQTITFEDVAGKGAKQITFDKVPLTVASDYACEDADIT--YQLF- 523 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 E ++A K L + E + + + G ++ + +L ++ + L Sbjct: 524 ELFSEKLKAEPNNAKLL---HELEIPVAQILCQMEHDGILLNKAFLGELSARFDEKIQAL 580 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQL 273 + + L LF GI ++ + + + H I + Sbjct: 581 ETVAFAQAGETFNLA-SPKQLGEVLFDRLGITGGKKTKTGQYSTSEAVLATIDHPLIETV 639 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + L++L S+ + + L+ S+ R+ + + TGR S QN+P + Sbjct: 640 LEHRSLSKLKSTYT-----DALANVADSNDRVHTSY-HQALTTTGRLSSTEPNLQNIPIR 693 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+K++ AD + IE R++A A Sbjct: 694 T------------------------DTGRLIRGAFIAPKGRKVLSADYSQIELRLMAHFA 729 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + I+AF G DI+ T A+ D V+ E+R K + L Y AK Sbjct: 730 NDPVLIRAFQEGHDIHRATAAEILGKAFDDVTSEERRQAKAVNFGLLYGMSEFGLAKQLG 789 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL---------------------WMQDQ 488 ++ + + + + + + ++ Sbjct: 790 FTRQQAQDYIKLYFARYPTVRAYMQATRTAAQNQGYITTILGRKLFTPDMQHPNRGVRQA 849 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQ--------GVLQLWKDLTEGFACVVQEGGSISA 540 A+ L G+A +++K A A ++ +LQ+ +L E + Sbjct: 850 AERAAINAPLQGSAADIIKLAMIAVNEVLPTEHAKMLLQVHDELVFEADEDKAEAIAELI 909 Query: 541 RRVANVPRLVMRRHKRD 557 + + K Sbjct: 910 KNAMQEVLSKTAKDKGW 926 >gi|313677322|ref|YP_004055318.1| DNA polymerase i [Marivirga tractuosa DSM 4126] gi|312944020|gb|ADR23210.1| DNA polymerase I [Marivirga tractuosa DSM 4126] Length = 936 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 97/578 (16%), Positives = 190/578 (32%), Gaps = 113/578 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLLQYLR 62 D ET L A + A+++ D+ E + + + L Sbjct: 368 DTET---TDLEPT-------DAELVGLAFSYVAGEAYYVPFPADQKEAQKIADEFKEVLE 417 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL----ALNF 118 +E + + N ++ + + G+ + K + ++LA P + N + LN+ Sbjct: 418 NEDITKIGQNLKYDIQVMRNY-GVRVQGK--MFDTMLAHYLLDPETRHNMDVMAENYLNY 474 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 S GK + +G++ P + EY D + T +L L Sbjct: 475 SPVSITDLIGKKGVK---QGNMRDVPV-----------EDVVEYAGEDADITLQLKHILE 520 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L D E L + + G +ID D + K+ + + + E I +L Sbjct: 521 KEIKENNLESLLHDVEEPLSYVLAEMEYEGVKIDKDALSKMSKELETAALEAQEKIFELA 580 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF + T + +++LA + + Sbjct: 581 GQEFNIA-SPKQLGEILFDKMKLVDKPKKTKTGQYATGEEILSKLANEHEIADKILEFRE 639 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 KL + L + +S DGR+ + + TGR S QN+P + Sbjct: 640 YQKLKSTYVDALPKLISKKDGRVHTDYR-QAVAATGRLSSNNPNLQNIPIRTEK------ 692 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + +L+ AD + IE R++A + ++ ++A Sbjct: 693 ------------------GRLIRKAFVPRDENYQLMAADYSQIELRIMAAFSQDEAMMEA 734 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F NG DI+ TT AK F +D V R K + + Y G A+ + Sbjct: 735 FKNGRDIHATTAAKVFGVDLDDVDPGMRRKAKEVNFGIIYGISAFGLAQNLNISRTEASD 794 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 ++ + + + + S + ++ A+ Sbjct: 795 IIKAYFKEFPRVHDYMEKVKEDARANEYVTTILGRKRWLRDINSRNQTIRGYAERNAINA 854 Query: 497 KLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + G+A +++K A H + ++Q+ +L Sbjct: 855 PIQGSAADMIKIAMINIHKWMEKENLKSKMIMQVHDEL 892 >gi|227536005|ref|ZP_03966054.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|227244118|gb|EEI94133.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] Length = 930 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 95/553 (17%), Positives = 182/553 (32%), Gaps = 95/553 (17%) Query: 28 AVITLCAYAWDDEP---VKLWDRTEQS-AMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 A I ++A + V D EQ+ + + L D + + N ++ +L + Sbjct: 373 ADIVGLSFAIEKGKAYYVPTPDSREQALEIINIFKPILEDPAIQKIGQNIKYDILLLSRY 432 Query: 84 LGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 D+ K + ++LA + LA N+ ++ LI KG Sbjct: 433 ---DVKVKGALFDTMLAHYLIDPDTRHGMDVLAENYLGYIP--VSITKLIGE--KGKKQG 485 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQ 192 D +L EY D + T +L ++ PL + E L + Sbjct: 486 NMRDVEI-------ELIKEYASEDADITLQLKEKFEPLLEETATLKLAQEVEFPLVYVLS 538 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I G +ID+D++ + I ++ + L+ I + + L LF +D Sbjct: 539 EIEKNGVKIDVDVLSVFSKTIEEDVRNLEASIYEKAGVKFNIA-SPKQLGEVLFDKLQLD 597 Query: 253 LVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 T + + LA IL+ ++ L ++ + L Sbjct: 598 PKAKKTKTGQYKTGEDVLLTLANKSDIVQDILDFRQLQKLKSTYVDALPSLINPNTGLIH 657 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T + TGR S QN+P + VR Sbjct: 658 TSYNQAVAATGRLSSTNPNLQNIPIRTER------------------------GREVRKA 693 Query: 368 IIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 I ++ AD + IE R++A ++ + ++AF G DI+ T AK + +D+VS Sbjct: 694 FIPRSENNVILSADYSQIELRLMAELSQDANMLEAFQKGYDIHRATAAKVYGLELDEVSS 753 Query: 427 EQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH- 481 +QR K + + Y A + + Q+ Q + A + Sbjct: 754 DQRRNAKAVNFGIIYGQSAFGLSQSLGIPRREAADIIDQYFQQYSGIRDYMSKAIASAKE 813 Query: 482 --------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA--------- 512 ++ ++ A+ + G+A +++K A Sbjct: 814 NGFVETILKRRRYLRDINSANMTVRGFAERNAINAPIQGSAADMIKVAMLRIQEDIEEQQ 873 Query: 513 -KHQGVLQLWKDL 524 + ++Q+ +L Sbjct: 874 LAGKMIMQVHDEL 886 >gi|3913510|sp|O52225|DPO1_THEFI RecName: Full=DNA polymerase I, thermostable; AltName: Full=TFI polymerase 1 gi|2739139|gb|AAC46079.1| thermostable DNA polymerase [Thermus filiformis] Length = 833 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 89/492 (18%), Positives = 156/492 (31%), Gaps = 74/492 (15%) Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 LA L L E + L+ + ++ P R + Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTHPEGVARRYGGE--- 399 Query: 158 LFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208 F E + LF+ L P + ER L + + RG R+D+ L+ Sbjct: 400 -FTEDAAERALLSERLFQNLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L + +E ++L+ ++ +L + L LF G+ V +E T K + Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQG 517 Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 + L + L + KL + L V GRL A+ TGR S Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLSS 576 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R +A G L+ AD + Sbjct: 577 SDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADYS 612 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++G++ + F G+DI+ T A F V + R K + + Y Sbjct: 613 QIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDPKMRRAAKTVNFGVLYG 672 Query: 443 GGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------- 484 A + ++++ Q+ + + E Sbjct: 673 MSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPD 732 Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVVQ 533 +++ A + GTA +L+K A + L + + V Sbjct: 733 LASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVP 792 Query: 534 EGGSISARRVAN 545 E + A+ + Sbjct: 793 EDRAEEAKALVK 804 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R Y + G Y+ S++ R ++ N+ VQ + D Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 ++ M G ++L VHDE+V E P+ L +M Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807 >gi|148553374|ref|YP_001260956.1| DNA polymerase I [Sphingomonas wittichii RW1] gi|148498564|gb|ABQ66818.1| DNA polymerase I [Sphingomonas wittichii RW1] Length = 941 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 86/527 (16%), Positives = 174/527 (33%), Gaps = 94/527 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L ++ + N ++ ++ K G+D+ T +L+ L + L + Sbjct: 418 LKPLLEAAHILKIGQNIKYDMVVLAKY-GVDVAPYD--DTMLLSY--DLDAGLGGHGMDE 472 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK- 175 HL G C +D + EY D + T L++ Sbjct: 473 LAQRHLDH---GCIEFKTVCGTGKSQISFD------KVTLDVATEYAAEDADVTLRLWQL 523 Query: 176 ---RLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 RL P +R L + + G ++D + + +L + E +L+ I Sbjct: 524 LKGRLAPEAATRVYELIDRPLVPVLTGMERAGIKVDREELARLSAEFSGEATRLEAAIHA 583 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASS 285 L LF G+ + + + + +LA D + + RL Sbjct: 584 EAGTPFT-VGSPKQLGDILFDKMGLKGGRKGKTGV-YSTDVTELERLAGDGVAIARLVLD 641 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + ++ GR+ ++TGR S QN+P + Sbjct: 642 WRQLTKLRSTYTDALQQQINPATGRVHTCFSM-AVAQTGRLSSTDPNLQNIPIRS----- 695 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R +A GK ++ AD + IE R+ A +A Sbjct: 696 -------------------DHGRRIRDAFVAEPGKLILSADYSQIELRLAAHMADVPALK 736 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AFA G+DI+ T + F +V+++ RA K + ++ Y G A + Sbjct: 737 DAFARGDDIHALTAQEVFG----EVNRDTRARAKTINFSILYGISAWGLAGRLEVSREEA 792 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAE--------------SHHLWM-------QDQYPEFAV 494 + ++ + + + +H W+ + A+ Sbjct: 793 QGMIDRYFSRFPGINHYIAATLGQVRDQGYVSTLFGRKTHLPWIRSAKQGERQSAERQAI 852 Query: 495 KDKLIGTACELVKKAWRAKHQ-------GVLQLWKDLTEGFACVVQE 534 + GT+ +++K+A + G +++ + + + Sbjct: 853 NAPIQGTSADIIKRAMVRMNPALAAAGLGDVKMLLQVHDELVFELAP 899 >gi|304320442|ref|YP_003854085.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] gi|303299344|gb|ADM08943.1| DNA polymerase I [Parvularcula bermudensis HTCC2503] Length = 940 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 84/511 (16%), Positives = 164/511 (32%), Gaps = 96/511 (18%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL--ARTNGLP 106 ++ L L D +++ V N ++ ++ + DI + T +L A G Sbjct: 405 SEATALDILKPVLLDPSILKVGQNLKYDLLILR---ERDIDVVGYDDTMLLSYAADCGFA 461 Query: 107 SSLKNACLALN-FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S L+ +E GK D+ Y Sbjct: 462 SLHGMDELSKRHLGHEPIPYKEIVGTGKKQKTFGDVPIKDAYIY---------------- 505 Query: 162 YCKRDVEATRELF----------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 D + T L + +R L + + G ++D D + L Sbjct: 506 -AAEDADVTLRLHTILKSRAIESQVYTVYETMDRPLVSVITDMERAGIKVDRDRLSALSG 564 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSH 267 AQ + + + + + LF G+ ++ T L Sbjct: 565 EFAQRMAAHEAAVHDIAGERFNLA-SPKQIGDILFGKLGLPGGKKTKTGAWSTAADTLET 623 Query: 268 --SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 ++ ++A++++ +R + + LSE++ GR+ + ++ TGR S Sbjct: 624 LAADGAEIAQEILSHR-GLAKLKGTYTDALSESIHPKTGRVHTSFSL-ASTTTGRLSSND 681 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P + +R I +G L+ AD + I Sbjct: 682 PNLQNIPIRTED------------------------GRKIREAFIPEDGNVLISADYSQI 717 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442 E R+LA IA I+AF G DI+ T A+ F P++ + R K + + Y Sbjct: 718 ELRLLAHIAEIGPLIEAFHQGLDIHAMTAAEVFGVPLEGMDPSIRRQAKAINFGIIYGIS 777 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479 G A+ L ++++ + + D + Sbjct: 778 AFGLARNLGIGRDEASLFIKRYFERFPGIKAYMDETIEGARVHGYVETLFGRRSHTPNIK 837 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + ++ A+ + G+A ++VK+A Sbjct: 838 AKQPNIRMGAERQAINAPIQGSAADIVKRAM 868 >gi|153005315|ref|YP_001379640.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] gi|152028888|gb|ABS26656.1| DNA polymerase I [Anaeromyxobacter sp. Fw109-5] Length = 899 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 97/554 (17%), Positives = 181/554 (32%), Gaps = 91/554 (16%) Query: 28 AVITLCAYAWDDEPVKL-WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL-G 85 A + + P +L + + P L + AH +R + L Sbjct: 352 AFYLPLRHQYLGAPAQLSAEEAAGALRP------LLSGELPKHAH----DRKGVQHALAQ 401 Query: 86 IDIPSKRWICTSVLARTNGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 + + + LA LP+ +L + L + G + + Sbjct: 402 LGLALGGPGADTDLASRLLLPTRREHALADVARE-RIGCELPRDPSGGDAARK-----SE 455 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVE--ATREL-FKRLIPLS-DGERDLWLLDQTINDR 197 P + V W D+ R L + L+PL D ER L + + Sbjct: 456 RVPVEGLEVERVGEWAAQCAASLLDLAPALERALESEGLLPLYRDVERPLVPVLCEMERA 515 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D + + + + L+ I + T L LF + ++ Sbjct: 516 GILVDRAAMEGMSAEFGRTMQDLEARIHAAAGHPFNIA-STRELAQVLFTELALPVLKRL 574 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQF 311 + + +LA+ L RL A+ KL + L + V DGR+ T Sbjct: 575 KTG--PSTDQDVLEKLAEQHELPRLVLEHRALAKLKGTYVDALPQLVDPRDGRIHTTFHQ 632 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA+ TGR S QN+P + S +R+ +A Sbjct: 633 AGAA-TGRLSSSDPNLQNIPVRT------------------------ELSRRIRAAFVAP 667 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G +L+ AD + IE R+LA + + ++AF ED++ T A+ F +V+ + R I Sbjct: 668 PGWRLLSADYSQIELRILAHYSDDPALLEAFRLREDVHTRTAAETFGVATGEVTSDMRRI 727 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 KV+ + Y G ++ + + ++ + + Sbjct: 728 AKVLNFGIAYGLSAFGLSQRLDLPGAEAQGIIDRYFARYAGVRRYVEKAVEDARATGESR 787 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ------GVLQL 520 + + + +++ A+ + GTA ++VK A H +L Sbjct: 788 TLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADIVKVAMIRVHDALAGDARRARL 847 Query: 521 WKDLTEGFACVVQE 534 + + V E Sbjct: 848 LLQVHDELVLEVPE 861 >gi|330837291|ref|YP_004411932.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] gi|329749194|gb|AEC02550.1| DNA polymerase I [Spirochaeta coccoides DSM 17374] Length = 946 Score = 251 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 101/580 (17%), Positives = 182/580 (31%), Gaps = 102/580 (17%) Query: 7 DIETRSPQPLPK---VG---VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D+ET + K VG W E + L A + V + AM + + ++ Sbjct: 381 DVETT-DIDVMKAVPVGFSLSWKAGEAWYVPLVA---GGKTVS-----NEKAMKAVVKKH 431 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + + + N ++ + + + L +A N + Sbjct: 432 LENPALGVIGQNLKYDYKVMARWGVRIANPVFDTMVAAWL--------LDSASGIYNMDK 483 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 K G I P ++ +Y D + T L++ P+ Sbjct: 484 LADKYL-GYVTITY-----DQVVPKGALFSDVPL--DKAVQYAAEDADVTWRLYETFAPM 535 Query: 181 S----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 D E L + + G R+D+D ++ E I +K+ +I +L Sbjct: 536 LAERKMTSLMDDLEMPLLRVLADMELEGVRLDVDRLIMFGEEIDGRVEKITREIYELCGH 595 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMS---EGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L+ LF G+ + + T L LIL+ Sbjct: 596 EF-NINSPKQLQTVLFGERGLPVGRKTASGPSTAVETLEKLVGLDPVPALILDYRGLVKL 654 Query: 288 AILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L E V + GR+ T G + TGR + QN+P + Sbjct: 655 KNTYIDALPEQVDVNTGRVHTTFIQTG-TATGRLASRNPNLQNIPIRNDD---------- 703 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +RS + G + AD A IE VLA + G++ +AF G+ Sbjct: 704 --------------GRRIRSAFVPERGYVFLSADYAQIELVVLAHVTGDEGLREAFLAGQ 749 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462 D++ T + FN + V+ +QR I K + + Y + S + + Sbjct: 750 DVHRHTASLIFNVKPEDVTPDQRRIAKTINFGVMYGMSTFRLSNELAISHSQAAEFIDSY 809 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGT 501 + TF D + ++ V + GT Sbjct: 810 FKRYHGVKTFVDETRKKAEETGFVSTMFGHERHVPEIRSSNRMEKSGAERVVVNTIIQGT 869 Query: 502 ACELVKKAWRA-----KHQGV-LQLWKDLTEGFACVVQEG 535 A +++K A K G+ +L + + V G Sbjct: 870 AADIMKLAMLRISRSLKDSGINARLLLQVHDELIFEVASG 909 Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 I+Q + DI+ M +++ ++L VHDE++ E + L Sbjct: 862 VNTIIQGTAADIMKLAMLRISRSLKDSGINARLLLQVHDELIFEVASGQEEKLSVLVK 919 >gi|4731571|gb|AAD28505.1|AF121780_1 DNA polymerase I [Rhodothermus marinus] Length = 924 Score = 251 bits (641), Expect = 2e-64, Method: Composition-based stats. Identities = 103/562 (18%), Positives = 188/562 (33%), Gaps = 92/562 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPS 55 +L ID ET S + A A + A++W+ P L D T + Sbjct: 352 FERLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLE 401 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L LR V N ++ ++ + G+ +P + T V LA Sbjct: 402 RLAPILRRAQ-RKVGQNLKYDLVVLARH-GVQVPPP-YFDTMVAHYLIAPEEPHNLDVLA 458 Query: 116 LNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEA 169 + + + G+ + + PY C + QL D Sbjct: 459 RQYLRYQMVSITELIGSGRDQKSMRDVSIDEVGPYACEDTDIAL--QLADVLAAELDRHG 516 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 R + + + E L + + G ID ++ ++ + + E +L+ I ++ Sbjct: 517 LRHIAE------EMEFPLIEVLADMERTGICIDRAVLREIGKQLEAELHELEVKIYEVAG 570 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ + T + S + +LA L L + Sbjct: 571 VEF-NIGSPQQLADVLFKKLGLKPRART-STGRPSTKESVLQELATQHPLPGLILDWRHL 628 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342 KL + L + GR+ T + TGR S QN+P R E E Sbjct: 629 AKLKSTYVDGLEPLIHPETGRIHTTFN-QTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + G KL+ AD IE R+LA ++G++ +AF Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 G+DI+ T A+ F P ++V+ EQR K++ + Y G A+ + Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 ++++ + + + E+ + AV Sbjct: 783 IEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842 Query: 498 LIGTACELVKKAWRAKHQGVLQ 519 + GT +++K A + + + Sbjct: 843 IQGTQADMIKLAMVHIYHRLKR 864 >gi|210077499|gb|ACJ07014.1| PolI [Thermus sp. ATCC 27737] Length = 830 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 86/454 (18%), Positives = 149/454 (32%), Gaps = 80/454 (17%) Query: 146 DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIP-----------LSDGERDLWLL 190 D N + +G K D A + L++ L P + ER L + Sbjct: 379 DPGNTNPEGVARRYGGEWKEDAAARALLSERLWQALYPRVAEEERLLWLYREVERPLAQV 438 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G R+D+ + L + +A E ++L+ ++ +L + L LF G Sbjct: 439 LAHMEATGVRLDVPYLEALSQEVAFELERLEAEVHRLAGHPF-NLNSRDQLERVLFDELG 497 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGR 304 + + +E T K S + + L + + ++KL + L V GR Sbjct: 498 LPPIGKTEKTGKRSTSAAVLELLREAHPIVGRILEYRELMKLKSTYIDPLPRLVHPKTGR 557 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 L A+ TGR S QN+P + + Sbjct: 558 LHTRFN-QTATATGRLSSSDPNLQNIPVRT------------------------PLGQRI 592 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R IA G LV D + IE RVLA ++G++ I+ F G+DI+ T A F P + V Sbjct: 593 RKAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETAAWMFGVPPEGV 652 Query: 425 SKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 R K + + Y A + ++++ Q+ + E Sbjct: 653 DGAMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPKVRAWIAKTLEEG 712 Query: 481 HHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--- 516 +++ A + GTA +L+K A Sbjct: 713 RKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLRP 772 Query: 517 -----VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +LQ+ +L E + A+ Sbjct: 773 LGVRILLQVHDELVLEAPKARAEEAAQLAKETME 806 Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 11/212 (5%) Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 K F H + L ++ + E +D + E A + G E Sbjct: 594 KAFIAEEGHLLVALDYSQIELRVLAHLSGDENLIRVFREGKDIHTETA--AWMFGVPPEG 651 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHKRDVHIVLP 563 V A R + + + QE A + R + + + L Sbjct: 652 VDGAMRRAAK-TVNFGVLYGMSAHRLSQELSIPYEEAAAFIERYFQSFPKVRAWIAKTLE 710 Query: 564 SSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM----KNA 617 R+ Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 711 EGRKKGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRL 770 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 G I+L VHDE+V E P L Sbjct: 771 RPLGVRILLQVHDELVLEAPKARAEEAAQLAK 802 >gi|326335129|ref|ZP_08201326.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692659|gb|EGD34601.1| DNA-directed DNA polymerase I [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 929 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 97/557 (17%), Positives = 188/557 (33%), Gaps = 89/557 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L + +E+++ + N ++ + GI++ + + T + L+ Sbjct: 405 LKPFFENESILKIGQNLKYDFKILANY-GIEVKGE-FFDTMIAHYLLNPDMRHNMDLLSE 462 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + E LI + KG + +L EY D + T +L Sbjct: 463 AYLGYSPISIE--TLIGKKGKGQLTMRAV---------PAELQKEYAVEDTDVTLQLKHV 511 Query: 177 LIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +PL + E L + + G R+D + +L + IA + L++ I Sbjct: 512 FLPLLEKDQMLSLFRKVEAPLVEVLAQMEYEGIRVDTHFLAQLSKEIAADLIGLEKTIFS 571 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + S L LF + T + S +++LA + Sbjct: 572 QAEESFNLS-SPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASKHEIVANVLEF 630 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 A+ KL L V+ GR+ T + TGR S QN+P + Sbjct: 631 RALQKLQSTYIEALPREVNPHTGRIHTTF-MQAVTATGRLSSNQPNLQNIPIRT------ 683 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + L+ AD + IE R++A ++ ED I Sbjct: 684 ------------------PRGSQIRKAFVPRNEDYTLLSADYSQIELRIIAALSEEDHMI 725 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF G+DI+ +T AK F P++ V+KEQR+ K + + Y G ++ S Sbjct: 726 EAFLEGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQS 785 Query: 456 GLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAV 494 + + Q T+ + S + ++ AV Sbjct: 786 KELIDTYYQTYPKLKTYIEKQIFFAREHGYVQTILGRRRYLPDVYSRNQVVRGAAERNAV 845 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + G+A +++K A Q + + + + + +VP+ + Sbjct: 846 NAPIQGSAADIIKIAMVRIAQRIQK--------EGLATRMLLQVHDELLFDVPKKELEVA 897 Query: 555 KRDVHIVLPSSRRLVYS 571 K + + ++ L+ Sbjct: 898 KALIREEMENAYTLIVP 914 >gi|223934879|ref|ZP_03626798.1| DNA polymerase I [bacterium Ellin514] gi|223896332|gb|EEF62774.1| DNA polymerase I [bacterium Ellin514] Length = 947 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 95/623 (15%), Positives = 195/623 (31%), Gaps = 123/623 (19%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKLWDRTEQS-AMP 54 + D ET S + L A+ E V + E++ + Sbjct: 373 LKTFCFDTETTS------------LDTKEARLIGLAFAFEKQKGFYVAVPADPEEAREIL 420 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +E + V HN ++ + K W G+ L + L Sbjct: 421 QEFRAVFENEQIQKVGHNLKYDLAVLK-----------WHG-------VGVHGKLFDTML 462 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG----------EYCK 164 A + E E + + + + P T+ + + EY Sbjct: 463 AHSLIE-----PEMRHGMDYMSEVYLGYSPISITKLIGDEKSKQLNMADVPVAKVAEYAA 517 Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T +L+++L PL + E L + + G ++D + + ++ Sbjct: 518 EDADVTWQLWEKLEPLLKEKGQERVFYEVEAPLIPVLTAMEYEGIKVDASALAEFSTQLS 577 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 +E ++ I +L + L LF I T + + + LA Sbjct: 578 KEMANHEQTIYRLAGQEF-NLNSPRQLGEILFDKLKISENAKKTKTGQYATNEQTLMDLA 636 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 D + + KL + L + GR+ T + TGR + Q Sbjct: 637 ADHEIVQRLLDYRGATKLKSTYADALPGTIWKPTGRVHTTFN-QAVTTTGRLNSQNPNLQ 695 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 N+P + +R + L+ AD + IE R Sbjct: 696 NIPIRT------------------------EQGKEIRKAFVPRNEDYVLLSADYSQIELR 731 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443 ++A ++ E ++ F DI+ T A+ + P+D+V+ E R K++ + Y G Sbjct: 732 IIAALSHEQGMLEDFGRKLDIHTATAARVYGVPLDQVTPEMRRKAKMVNYGIAYGISAFG 791 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482 A+ + ++Q+ + + S + Sbjct: 792 LAQRLRIPRKEAATIIEQYFAQYPGIAKYMRDTIDFAKQHGYVETVTGRRRYMRDIRSAN 851 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 ++ A+ + GTA +++K A H + + + L V + + Sbjct: 852 AAVRGGAERNAINAPIQGTAADMIKIAMINIHGELTK--RKLKSRMLLQVHDELVFDVHQ 909 Query: 543 V--ANVPRLVMRRHKRDVHIVLP 563 V ++V + + + + +P Sbjct: 910 TEENEVRQIVEEKMRTAIQLEVP 932 >gi|93005249|ref|YP_579686.1| DNA polymerase I [Psychrobacter cryohalolentis K5] gi|92392927|gb|ABE74202.1| DNA polymerase I [Psychrobacter cryohalolentis K5] Length = 988 Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats. Identities = 96/560 (17%), Positives = 188/560 (33%), Gaps = 81/560 (14%) Query: 6 IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQSAMPSDLLQ 59 ID ET S L + A +A +A + + K DR + + L Sbjct: 396 IDTETTSVYWRQAELVGLSFAVQAHEAYYIPLTHALEGDELIAKQLDR---DTVLARLKP 452 Query: 60 YLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLART--NGLPSSLKNA 112 L + + + + ++ + I W ++LA N + Sbjct: 453 ILENPNIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAAITRHGMD 512 Query: 113 CLALNFSEHLT---KMEEGKALIA-RFCKGSID-SPPYDCTRANHVQAWQLFGEYCKRDV 167 LA ++ + T + GK F + +ID + Y C A+ +QLF + K+ Sbjct: 513 DLARHYLQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACEDADIT--YQLFDLFSKKLA 570 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + T L + E + + G I + +L + +E L++ ++ Sbjct: 571 DDTNNAKL----LHELEIPTAEILCQMEANGILIRRPFLNELSKRFDEEIIALEKRAYEV 626 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ ++ T + + ++++ L+ L G Sbjct: 627 AGEEF-NLGSPKQLGEMLFDKLGVVGGKKTK-TGQYSTGEAVLSKIDHPLVDITLEYRGL 684 Query: 288 AILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + LK + L + T + TGR S QN+P + + Sbjct: 685 SKLKSTYTDALDNVADAKTDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTAT-------- 736 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA G+ ++ AD + IE R++A +G+ AF Sbjct: 737 ----------------GRLIRQAFIAPEGRVILAADYSQIELRLMAHFSGDKNLTHAFNE 780 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G DI+ T A+ + +V+ +R K + L Y AK + S + Sbjct: 781 GLDIHAATAAEVLGKEVAEVTATERRNAKAINFGLLYGMSAFGLAKQLQMSRSEAQDYID 840 Query: 461 QFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLI 499 + + + +A ++ + ++ A+ L Sbjct: 841 MYFERYPGVKDYMINTRASAYEHGYIETILGRKLYTPDINHSNRMVKQGAERAAINAPLQ 900 Query: 500 GTACELVKKAWRAKHQGVLQ 519 G+A +L+K A A + + + Sbjct: 901 GSAADLIKLAMIAVDKVLPK 920 >gi|319953575|ref|YP_004164842.1| DNA polymerase i [Cellulophaga algicola DSM 14237] gi|319422235|gb|ADV49344.1| DNA polymerase I [Cellulophaga algicola DSM 14237] Length = 945 Score = 251 bits (640), Expect = 3e-64, Method: Composition-based stats. Identities = 110/612 (17%), Positives = 204/612 (33%), Gaps = 111/612 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-------PVKLWDRTEQSAMPSDLLQ 59 D ET PL A + A++W+ P D+TE + L Sbjct: 377 DTETTGLNPLT----------AELVGIAFSWEASKGFYIPFPA---DKTEAQEIIEQLRP 423 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNF 118 + DE + + N ++ + K ++ K ++LA LA + Sbjct: 424 FFEDEAIEKIGQNLKYDIKVLDKY---NVKVKGKCFDTMLAHYLINPDMRHNMEVLAETY 480 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + LI + K ++ D N + Y D + T +L ++ Sbjct: 481 LNYTP--VSITELIGKKGKNQLN--MRDVPLPNQTE-------YAAEDADITYQLAQQFK 529 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P +D E L + + G +D + L E + + KKL+ DI + Sbjct: 530 PELEEAKTQELFTDIEIPLLHVLADMELEGINLDTKFLNSLAEDLDNDIKKLEADIYEEA 589 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF + T + + ++ LAKD + S Sbjct: 590 GEEFNIA-SPKQLGDILFDKLALVKKPKKTKTGQYSTAEDVLSYLAKDHKIIENVLSYRG 648 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L V GR+ + TGR S QN+P + Sbjct: 649 LAKLKSTYVDALPAQVEESTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER------ 701 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401 VR + N LV AD + IE R++A ++ E I+A Sbjct: 702 ------------------GRQVRKAFVPRNKEYVLVAADYSQIELRIIAALSEETTMIEA 743 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F NGEDI+ +T +K FN P+++V++EQR+ K + + Y G + + Sbjct: 744 FKNGEDIHASTASKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRAEAKE 803 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + + + ++ + + ++ AV Sbjct: 804 LIDTYYKTYPKLKSYMGGLVDFARDNGYVQTVLGRRRYLKDINGSNAIVRGAAERNAVNA 863 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G+A +++K A H+ + E + + V +V + + K Sbjct: 864 PIQGSAADIIKIAMINIHKKL--------EEGKYKTKMLLQVHDELVFDVYKPELEEMKT 915 Query: 557 DVHIVLPSSRRL 568 + + ++ +L Sbjct: 916 LIKSEMENAYKL 927 >gi|21674485|ref|NP_662550.1| DNA polymerase I [Chlorobium tepidum TLS] gi|21647674|gb|AAM72892.1| DNA polymerase I [Chlorobium tepidum TLS] Length = 950 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 84/490 (17%), Positives = 162/490 (33%), Gaps = 73/490 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-NACLA 115 L L + + N ++ ++ KK G+++ + T + + + + A Sbjct: 426 LKPLLENPEIPKTGQNLKYDILVLKKY-GVELAPVGF-DTMLASYVLNPEARHNLDDMAA 483 Query: 116 LNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L TK E GK I F Y C A+ + + +E T Sbjct: 484 LYLGRQTTKYTELVGTGKQTIGIFEVEPRKLSDYACQDADIALRLRY---SLEEQLEKTP 540 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 EL + L E L + + +G ID + +L + E L E I + T Sbjct: 541 ELLEVCRKL---EFPLVRVLADMEHKGISIDTAHLEQLSIKVTGELATLTERIFEATGET 597 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGS 287 + L LF + + ++ ++ + + + +A DL+ R + Sbjct: 598 F-NIDSPKQLGHILFDVLKLPAKKATKTGYSTNVQVLEELAMLHPVASDLLEYR-SLQKL 655 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + ++ GR+ + + TGR S QN+P + Sbjct: 656 KSTYIEALPKMINPLTGRVHTSFN-QSITATGRLSSSNPNLQNIPIRT------------ 702 Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I S G L+ AD + IE R+ A ++G+ I+AF N Sbjct: 703 ------------ELGKEIRRAFIPSNPGNLLLSADYSQIELRIAAELSGDPMLIEAFRNH 750 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 EDI+ T F+T +++ + R K + + Y G ++ + Sbjct: 751 EDIHAATARVIFDTK--EITPDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAKEIIDT 808 Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500 + + E+ + ++ + + G Sbjct: 809 YMAKYPGMFSSLQTIIEEAKKKGYVTTLMGRRRYVPDLNSANSNIRKAAERVTMNTPIQG 868 Query: 501 TACELVKKAW 510 TA +++K A Sbjct: 869 TAADIIKFAM 878 >gi|331090255|ref|ZP_08339142.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401874|gb|EGG81449.1| hypothetical protein HMPREF1025_02725 [Lachnospiraceae bacterium 3_1_46FAA] Length = 225 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 79/271 (29%), Positives = 109/271 (40%), Gaps = 58/271 (21%) Query: 416 AFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 F PI++++K R GK+ ELALGY G +M Sbjct: 1 MFGVPIEEITKGSPLRQKGKIAELALGYGGAVGALTSMG--------------------- 39 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A+ L + WR + + Q W D+ E V+ Sbjct: 40 -------------------ALAMGLSEDELPGLVSTWRNANPHITQFWWDVDEAAVRAVR 80 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN---------TAT 584 E R+ V + + + +LPS R+L Y + + Sbjct: 81 E------RKETQVGLIRFQYASGILFAMLPSGRKLAYVKPRMGVNKYGRDGLTYEGVGEN 134 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R TYG KL ENIVQ SRDIL E M K G+ IV VHDE V E P+ SV Sbjct: 135 KKWERMDTYGPKLVENIVQGTSRDILAEAMMRLNKAGFSIVFHVHDEAVLEVPEGKS-SV 193 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +C +M + PSW GLPL+A+GYE + Y+K Sbjct: 194 EEVCRIMAEPPSWVHGLPLRADGYECQFYKK 224 >gi|300727538|ref|ZP_07060929.1| DNA polymerase type I [Prevotella bryantii B14] gi|299775241|gb|EFI71842.1| DNA polymerase type I [Prevotella bryantii B14] Length = 920 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 95/599 (15%), Positives = 189/599 (31%), Gaps = 122/599 (20%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 L +D ET S + A + ++A ++ A+P++ + Sbjct: 347 FKNLSLDTETTSTNAI----------DAELVGLSFAVEENKAFYV------AIPAEREKA 390 Query: 61 LR----------DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPS 107 LR ++ ++ + N ++ + L DI K + +++A L Sbjct: 391 LRIVNIFKPLYENKKILKIGQNIKYDYEVL---LNYDIEIKGKMFDTMIAHYLIQPELHH 447 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 ++ + +EE LI K + + EY D Sbjct: 448 NMDYLAEVF-LNYQTIHIEE---LIGPKGKNQKNMRDLNPKDV---------YEYAAEDA 494 Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L L P + E L + + G +D + + + ++ + Sbjct: 495 DITLRLKNVLEPKLGEVKAEHLFWEIEMPLIPVLADMERNGICLDTNALQETSKVFTERM 554 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +K +E I + + + LF I T + + S + + Sbjct: 555 RKYEEKIYEEAAEKF-NISSPKQVGDILFGKMHIMEKPKKTKTGQYVTSEEVLQSIRAKN 613 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + + + KL + L ++ G + + + TGR S QN+P Sbjct: 614 PIVENILNYRGMKKLLSTYVDNLPTLINKRTGHIHTSFN-QALTATGRLSSSDPNLQNIP 672 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R C I G AD + IE R++A Sbjct: 673 VRTDD------------------------GKEIRKCFIPEPGCLFFSADYSQIELRIMAH 708 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 ++G++ I+AF G DI+ T AK ++ IDKV+ QR K + Y G A+ Sbjct: 709 LSGDENMIEAFREGFDIHRATAAKIWHEEIDKVTDSQRKKAKQANFGIIYGITTYGLAQR 768 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQ 486 S + + + + + SH+ ++ Sbjct: 769 MNISNSEAKDLITDYFKTFPKVQAYMEKAKEAARKNGYAETIFGRRRYLADINSHNGTVR 828 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEG 535 A+ + G+ +++K A K + +LQ+ +L +E Sbjct: 829 GFAERNAINAPIQGSEADIIKVAMIKIWNRFRQEGIKSKMILQVHDELNFSVYPEEKEK 887 >gi|158320241|ref|YP_001512748.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] gi|158140440|gb|ABW18752.1| DNA polymerase I [Alkaliphilus oremlandii OhILAs] Length = 894 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 98/572 (17%), Positives = 194/572 (33%), Gaps = 85/572 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS- 107 ++S + S L L DE + + H+ E I +I +++ P+ Sbjct: 365 KESDIISPLKDILEDEHIRIIGHDLKKEII---HFYPYEIHIANLYFDTMVGEYLLNPAK 421 Query: 108 -SLKNACLALNFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S LAL + EE GK ++ + + NHV+ + Sbjct: 422 SSYLLKDLALEYLGEEIIDEEKIVGKGKNQLSLWAAPENE---VKALLCNHVKVIAELAK 478 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 Y + +E + + K + E L + ++ G ++D +++L L+ + KL Sbjct: 479 YIQEKIE-DQGIHKLYY---EVELPLVEVLASMEFLGIKVDRNMLLALEVEFKEIIDKLT 534 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +I L I + L LF G+ ++ + + +L + Sbjct: 535 SEIYSLAG-ISFNINSPKQLGEVLFEKLGLPPTKKTKTG--YSTNADVLEKLQDQHEIIP 591 Query: 282 LASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 S + KL T L ++ R+ + + TGR S QN+P Sbjct: 592 KISEYRQVTKLKTTYVDGLLSIINPVTNRIHSSFN-QTVTATGRISSTEPNLQNIP---- 646 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R I+ G + + AD + IE RVLA IA + Sbjct: 647 --------------------VRLEMGRRLRKVFISKEGHEFIDADYSQIELRVLAHIAKD 686 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 D I AF +DI+ T ++ F P+++V+ R K + + Y G ++ Sbjct: 687 DNLIDAFIKNQDIHTRTASEIFEVPMEEVTSLMRGDAKAVNFGIVYGISDFGLSQNLNIP 746 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 S ++ + + S + + +S + ++ Sbjct: 747 VSKAKKYIESYFEKYPSIKEYMHNIVEEGKEKGYVVTLLNRRRYLPELKSSNFNIRSFGE 806 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A+ + G+A +++K A A + + D + + + P Sbjct: 807 RIAMNTPIQGSAADIIKIAMIAVYNRLKAENYD--------AKLILQVHDELIIECPENE 858 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + + + + ++ +V +K D SY N Sbjct: 859 IEEVSKILKESMENAIEMVVP-LKVDLSYANN 889 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYF 642 R++G ++ N +Q + DI+ M YD ++L VHDE++ E P+ Sbjct: 801 IRSFGERIAMNTPIQGSAADIIKIAMIAVYNRLKAENYDAKLILQVHDELIIECPENEIE 860 Query: 643 SVGTL 647 V + Sbjct: 861 EVSKI 865 >gi|284053371|ref|ZP_06383581.1| DNA polymerase I [Arthrospira platensis str. Paraca] Length = 750 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 121/672 (18%), Positives = 224/672 (33%), Gaps = 150/672 (22%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAM-PSDLLQ 59 D ET S L +G C + + + T+ + +L+ Sbjct: 178 DTETTSLEPRDANLVGIG------------CCWGSELSDLAYIPLNHTQGEMLNIEQVLE 225 Query: 60 YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 LR E N+ F+R++ ++ GI + + T + + SS L+ Sbjct: 226 ALRPILESEEYPKTLQNAKFDRLIL-RSQGITLKGVVF-DTMLASYIINPESSHNLTDLS 283 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + L + + + + K D + + F + +++ K Sbjct: 284 LRYLPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQI-----TQKMQDILK 338 Query: 176 RLIPLSD----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L L+D E+ L + + +G RID D + +L + + + L++ + + Sbjct: 339 DLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLEKTSHQAAGEV 398 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF +D + + + +L D + + K Sbjct: 399 F-NLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVINSILEYRTLSK 457 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E V SD GR+ + TGR S QN+P + Sbjct: 458 LKSTYVDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRT----------- 505 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R I +G LV AD + IE R+LA ++ E I+A+ Sbjct: 506 -------------EFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTN 552 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +D++ T F+ D ++ E+R +GK++ + Y GA+ Sbjct: 553 QDVHSLTAKLLFD--RDGITPEERRLGKIINFGVIYGMGAQ------------------- 591 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 FA + + TA + + +++ GV + L Sbjct: 592 -------------------------RFAREVGVSATAGKQFIDRFNSQYPGVFEY---LE 623 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-DCSYLNTAT 584 + +G ++ RR + +KG D LN Sbjct: 624 SQKLAAINQG-----------------------YVETILGRRRYFESLKGRDRDRLNYQD 660 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTP 640 Q++R +Q S DI+ M + Y ++L VHDE+V E P + Sbjct: 661 EQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQVHDELVFEVPLSE 714 Query: 641 YFSVG-TLCSLM 651 + + + S M Sbjct: 715 WEELEYQIKSTM 726 >gi|210077505|gb|ACJ07017.1| PolI [Thermus sp. OH.A2] Length = 833 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 89/492 (18%), Positives = 157/492 (31%), Gaps = 74/492 (15%) Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 LA L L E + L+ + ++ P R + Sbjct: 343 ALADLKEARGFLAKDLAVLALREGVALDPTDDPLLVAYLLDPANTHPEGVARRYGGE--- 399 Query: 158 LFGEYCKRDVEATRELFKRLIP---------LSDGERDLWLLDQTINDRGYRIDLDLVLK 208 F E + LF+ L P + ER L + + RG R+D+ L+ Sbjct: 400 -FTEDAAERALLSERLFQTLFPRLSEKLLWLYQEVERPLSRVLAHMEARGVRLDVPLLEA 458 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L + +E ++L+ ++ +L + L LF G+ V +E T K + Sbjct: 459 LSFELEKEMERLEGEVFRLAGHPF-NLNSRDQLERVLFDELGLTPVGRTEKTGKRSTAQG 517 Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSG 322 + L + L + KL + L V GRL A+ TGR S Sbjct: 518 ALEALRGAHPIVELILQYRELSKLKSTYLDPLPRLVHPRTGRLHTRFN-QTATATGRLSS 576 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + +R +A G L+ AD + Sbjct: 577 SDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGWLLLAADYS 612 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++G++ + F G+DI+ T A F V ++ R K + + Y Sbjct: 613 QIELRVLAHLSGDENLKRVFREGKDIHTETAAWMFGLDPALVDQKMRRAAKTVNFGVLYG 672 Query: 443 GGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------- 484 A + ++++ Q+ + + E Sbjct: 673 MSAHRLSQELGIDYKEAEAFIERYFQSFPKVRAWIERTLEEGRTRGYVETLFGRRRYVPD 732 Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ----LWKDLTEGFACVVQ 533 +++ A + GTA +L+K A + L + + V Sbjct: 733 LASRVRSVREAAERMAFNMPVQGTAADLMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVP 792 Query: 534 EGGSISARRVAN 545 E + A+ + Sbjct: 793 EDRAEEAKALVK 804 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R Y + G Y+ S++ R ++ N+ VQ + D Sbjct: 700 FPKVRAWIERTLEEGRTRGYVETLFGRRRYVPDLASRVRSVREAAERMAFNMPVQGTAAD 759 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 ++ M G ++L VHDE+V E P+ L +M Sbjct: 760 LMKIAMVKLFPRLKPLGAHLLLQVHDELVLEVPEDRAEEAKALVKEVM 807 >gi|291572090|dbj|BAI94362.1| DNA polymerase I [Arthrospira platensis NIES-39] Length = 959 Score = 250 bits (639), Expect = 4e-64, Method: Composition-based stats. Identities = 121/672 (18%), Positives = 224/672 (33%), Gaps = 150/672 (22%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAM-PSDLLQ 59 D ET S L +G C + + + T+ + +L+ Sbjct: 387 DTETTSLEPRDANLVGIG------------CCWGSELSDLAYIPLNHTQGEMLNIEQVLE 434 Query: 60 YLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 LR E N+ F+R++ ++ GI + + T + + SS L+ Sbjct: 435 ALRPILESEEYPKTLQNAKFDRLIL-RSQGITLKGVVF-DTMLASYIINPESSHNLTDLS 492 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L + L + + + + K D + + F + +++ K Sbjct: 493 LRYLPDLGIVAQSYSQLVPKGKTIADLDINTVANYCGLDVFTTFQI-----TQKMQDILK 547 Query: 176 RLIPLSD----GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L L+D E+ L + + +G RID D + +L + + + L++ + + Sbjct: 548 DLPRLNDLLRQVEQPLEPILAGMEFQGIRIDTDYLNQLSQQLGETLDNLEKTSHQAAGEV 607 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF +D + + + +L D + + K Sbjct: 608 F-NLGSPKQLSELLFDRLQLDRKKSRKTKTGYSTDATVLEKLKHDHPVINSILEYRTLSK 666 Query: 292 L-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L E V SD GR+ + TGR S QN+P + Sbjct: 667 LKSTYVDALPELVRSDTGRIHTDFN-QAITSTGRLSSSHPNLQNIPIRT----------- 714 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R I +G LV AD + IE R+LA ++ E I+A+ Sbjct: 715 -------------EFSRQIRKAFIPESGWLLVSADYSQIELRILAHLSQEKVLIEAYNTN 761 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 +D++ T F+ D ++ E+R +GK++ + Y GA+ Sbjct: 762 QDVHSLTAKLLFD--RDGITPEERRLGKIINFGVIYGMGAQ------------------- 800 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 FA + + TA + + +++ GV + L Sbjct: 801 -------------------------RFAREVGVSATAGKQFIDRFNSQYPGVFEY---LE 832 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG-DCSYLNTAT 584 + +G ++ RR + +KG D LN Sbjct: 833 SQKLAAINQG-----------------------YVETILGRRRYFEGLKGRDRDRLNYQD 869 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTP 640 Q++R +Q S DI+ M + Y ++L VHDE+V E P + Sbjct: 870 EQMLRAAANAP------IQGSSADIIKIAMIKLAEILKNYQARLLLQVHDELVFEVPLSE 923 Query: 641 YFSVG-TLCSLM 651 + + + S M Sbjct: 924 WEELEYQIKSTM 935 >gi|57233870|ref|YP_182100.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] gi|57224318|gb|AAW39375.1| DNA-directed DNA polymerase I [Dehalococcoides ethenogenes 195] Length = 903 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 95/519 (18%), Positives = 175/519 (33%), Gaps = 80/519 (15%) Query: 41 PVKLWDRTEQSAM-----PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 P + + M S L L DE + AHN+ + L G + + Sbjct: 366 PAEFIGSASEGQMFAAEGHSGLAALLGDEKISKTAHNAKYLMNLLLSA-GQAVKGLDF-D 423 Query: 96 TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR------FCKGSIDSPPYDCTR 149 T + A G A L F ++ + + ++ R F + + Sbjct: 424 TMIAAHLLG---EKNLAIKDLVFEHFGIEIADIENILTRNGKKASFSEVQLSEAAQLAAD 480 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLK 208 ++L G + + E RL+ L + E L + + G +D DL+ Sbjct: 481 YT----FRLKGIFAAQLAET------RLMDLFARVEMPLLPILLGMERTGIMLDTDLLKA 530 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 + E ++ KL+EDI + L LF + ++ ++ T +L Sbjct: 531 MAEKTGRQIFKLEEDIYARAGHNF-NIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVL 589 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 DLIL L+TL V+ R T + TGR S Sbjct: 590 EELKGKHRIVDLILEYRMLVKLKSTYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEP 649 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P G +R IA G L+ D + I+ Sbjct: 650 NLQNIP------------------------VRGEMGREIRRAFIAPPGTVLLAGDYSQID 685 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 RVLA ++ + I+AF + +DI+ T A+ N P KV+KEQR + K + + Y + Sbjct: 686 LRVLAHLSQDPALIEAFQSDQDIHTATAARLLNIPPSKVTKEQRRLAKTVNFGVIYGMSS 745 Query: 446 ----KVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAES 480 + + ++ + + + + + S Sbjct: 746 YGLEQATELSLEEADKFIKAYFEKYPRVAVYFSEIKQQVRTQGYVETLLGRRRYIPEINS 805 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + +++ A+ + GT+ +++K A + + + Sbjct: 806 PNRILRESAERMAINMPVQGTSADIIKLAMVRLDEKLKE 844 >gi|254469004|ref|ZP_05082410.1| DNA polymerase I [beta proteobacterium KB13] gi|207087814|gb|EDZ65097.1| DNA polymerase I [beta proteobacterium KB13] Length = 901 Score = 250 bits (639), Expect = 5e-64, Method: Composition-based stats. Identities = 91/543 (16%), Positives = 172/543 (31%), Gaps = 101/543 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + +E + V N ++ + K T +++ S LA Sbjct: 379 IKSITENENITKVGQNIKYDMHVLKNYDVTFKGP--IEDTMIMSYVIDSTESHGMDKLAK 436 Query: 117 NFSEHLTKMEE---GKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + +H E GK + F + SID Y D + T + Sbjct: 437 KYLDHDCISFESVVGKGVKQLTFDQVSIDDA----------------YLYASEDADVTLQ 480 Query: 173 LFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L++ L + E L I G I ++ + + + L+ Sbjct: 481 LYEHLNKKIIADSKLNYIYKEIEIPSLLTLFCIERNGVLISEKILHDQNQDLGLKILNLE 540 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + ++ + S LR LF I + T S + +L+ D L + Sbjct: 541 NEAYQIAEQPFNLS-SPKQLREILFDKMKIIPTKKTP-TGTPSTSEDVLEELSHDHALPK 598 Query: 282 LASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + ++ KL + L + ++ + R+ + + TGR + QN+P + + Sbjct: 599 VILEHRSLSKLKNTYTDKLPKMINLNTKRIHTSYN-QAVAITGRLASSEPNLQNIPIKTK 657 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 VR IA+ ++V D + IE R++A ++ + Sbjct: 658 ------------------------EGRKVREAFIANTDSQIVSCDYSQIELRIMAHLSKD 693 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTM 451 + AF EDI+ +T + FNT VS EQR KV+ L Y A + Sbjct: 694 PGLLDAFNQNEDIHRSTASAIFNTNDASVSSEQRRFAKVINFGLIYGMSAFGLSQTLNID 753 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKD---- 496 + + Q+ + + D E LW+ ++ Sbjct: 754 RNSAKNFIDQYFEKYPGVKNYMDQGKLVAKEQGYVETVFGRRLWVPLINSSNGIQRAAAE 813 Query: 497 ------KLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISA 540 + GTA +L+K A Q ++Q+ +L + Sbjct: 814 RAAINAPMQGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAELDIIKTEI 873 Query: 541 RRV 543 ++ Sbjct: 874 PKI 876 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 603 QAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVG-TLCSLMTKNP 655 Q + D++ M N K +++ VHDE+V E P+ + + +M+ Sbjct: 822 QGTAADLIKMAMNNVQQWIGDNKLETLMIMQVHDELVLEVPNAELDIIKTEIPKIMSNVA 881 Query: 656 SWAKGLPLKAE 666 + +PL A+ Sbjct: 882 T--LDVPLIAD 890 >gi|260892910|ref|YP_003239007.1| DNA polymerase I [Ammonifex degensii KC4] gi|260865051|gb|ACX52157.1| DNA polymerase I [Ammonifex degensii KC4] Length = 868 Score = 250 bits (638), Expect = 5e-64, Method: Composition-based stats. Identities = 75/419 (17%), Positives = 142/419 (33%), Gaps = 75/419 (17%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +L ++ E L + + G ++ + + L + + ++ +L E+I KL Sbjct: 453 IKLQEQEYLYYSVELPLAAVLADMEKVGVKVSEERLRSLSKELGEQLAQLSEEIYKLAGE 512 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLILNRLA 283 + L LF G+ V ++ L+ + H + ++ L +L Sbjct: 513 RF-NLNSPRQLGYILFEKLGLKPVKKTKTGYSTDASVLEKLAEHEIVAKVLVYRQLAKLK 571 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S+ + + L E + GRL T G + TGR + QN+P Sbjct: 572 STYT-----DALPELIDPATGRLHTTFLQAG-TATGRLASAEPNLQNIP----------- 614 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A L+ AD + IE RVLA ++ + +A Sbjct: 615 -------------VRDSLGRRIRQAFVAEGPDYVLLSADYSQIELRVLAHLSEDPGLCEA 661 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F GEDI+ T A+ F +V+ E RA KV+ + Y ++ K Sbjct: 662 FVKGEDIHARTAAEIFGVSPQEVTPEMRAKAKVVNFGIVYGMSDYGLSQELKIEPGEAHE 721 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKD 496 ++++ + F + A++ A+ Sbjct: 722 YIERYFRRYPRVKQFIERVIAQAREKGYVTTILNRRRYIPEILSSNRNQRQLGERLAINT 781 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 + G+A +L+KKA H+ +LQ+ +L E + + Sbjct: 782 TIQGSAADLIKKAMVDIHRQLKGQGFKCRMILQVHDELLFEVPKEELEKVAPIIKSTME 840 Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 19/225 (8%) Query: 446 KVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + F L +SQ ++ + + + +D + A ++ G + + Sbjct: 625 QAFVAEGPDYVLLSADYSQIELRVLAHLSEDPGLCEAFVKGEDIHARTA--AEIFGVSPQ 682 Query: 505 LVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 V RAK + G++ D ++ G A R K+ + Sbjct: 683 EVTPEMRAKAKVVNFGIVYGMSDYGLSQELKIEPG---EAHEYIERYFRRYPRVKQFIER 739 Query: 561 VLPSSRRLVYSDVKGDCSYLNTATSQLMR-ERTYGGKLTENIV-QAISRDILCEGMKNAT 618 V+ +R Y + R +R G +L N Q + D++ + M + Sbjct: 740 VIAQAREKGYVTTILNRRRYIPEILSSNRNQRQLGERLAINTTIQGSAADLIKKAMVDIH 799 Query: 619 KN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPS 656 + ++L VHDE++ E P V + S M + Sbjct: 800 RQLKGQGFKCRMILQVHDELLFEVPKEELEKVAPIIKSTMEQALP 844 >gi|218961649|ref|YP_001741424.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] gi|167730306|emb|CAO81218.1| DNA polymerase I [Candidatus Cloacamonas acidaminovorans] Length = 918 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 110/613 (17%), Positives = 211/613 (34%), Gaps = 99/613 (16%) Query: 2 SKLFIDIETRSPQPLPKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 ++ +D ET SP+P+ V ++A + +P ++ Sbjct: 343 KQISLDTETDSPEPMRANLVGISFCMDEKKAYYLPLGHQ----------LAVNLPLP-EV 391 Query: 58 LQYLRDE--TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L++L D + + HN F+ I+ + + + ++LA P +L + Sbjct: 392 LRHLEDALKGKLLLGHNLKFDLIVLAR---NGLELDNPLFDTMLAAYILDPGTLNYSLET 448 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA---NHVQAWQLFG--EYCKRDVE-- 168 +E KM LI + K + +A + AW ++ +R V+ Sbjct: 449 CALNELNYKMIPISDLIGK-GKNQSTFDLVEPEKACIYSAEDAWAVYKLYPVYRRKVDFS 507 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 LF + E L + Q + G ID ++ ++ I E K L + I Sbjct: 508 VMANLFDTI------ELPLIKVLQQMEMNGVAIDCSVLSEISHQINLELKTLTDKIYAFA 561 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + T L LF + ++ T S+L I +I+ S Sbjct: 562 GYEF-NINSTQQLAKLLFEEKKLPYGRKTKTGYSTDNSVLEELAIDYEIAGIIIQYRQLS 620 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L + ++ GR+ + + TGR S QN+P + Sbjct: 621 KLQSTYVSALPKMINPQTGRIHSSFN-QTVTSTGRLSSSNPNLQNIPVRT---------- 669 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFA 403 +R A + + L+ AD + IE R+LA ++ ++ I+AF Sbjct: 670 --------------EIGREIRKAFCAKDAEHLILDADYSQIELRLLALMSEDEVLIEAFK 715 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDL 459 DI+ AK FN I+KV+ +QR K + + Y G ++ + + Sbjct: 716 QDLDIHKRMAAKIFNVDIEKVTPDQRRAAKTINFGILYGMGQRKLSRELGISLNEAKDII 775 Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498 + S F + ++ + ++ + AV + Sbjct: 776 DGYYAQFPSIRNFINQCVNKARQQHYAETLFGRRLYLPNIDSKNQGLKSEAERIAVNMPI 835 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 GTA +L+K A H+ + D E ++Q + + V + + K V Sbjct: 836 QGTAADLIKIAMLNIHKQI-----DKREDIKMILQ----VHDELLFEVQQEALEETKNIV 886 Query: 559 HIVLPSSRRLVYS 571 + S+ Y+ Sbjct: 887 KTCMESALPPKYA 899 >gi|197122953|ref|YP_002134904.1| DNA polymerase I [Anaeromyxobacter sp. K] gi|196172802|gb|ACG73775.1| DNA polymerase I [Anaeromyxobacter sp. K] Length = 897 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 82/410 (20%), Positives = 148/410 (36%), Gaps = 70/410 (17%) Query: 175 KRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +RL PL + ER L + + G +D + + + + L+ I Sbjct: 490 ERLSPLYREVERPLVPVLVEMERTGILVDRGAMEGMSAEFGRSMQDLEARIHAAAGHPF- 548 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + T L LF+ + +V + + +LA+ L RL ++ KL Sbjct: 549 NVASTRELAQVLFVELELPVVKRLK--TGPSTDQDVLEKLAEQHALPRLVLEHRSLSKLK 606 Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + V DGR+ T GA+ TGR S QN+P + Sbjct: 607 GTYVDALPQLVDPADGRIHTTFHQAGAA-TGRLSSSDPNLQNIPVRT------------- 652 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R +A G +L+ AD + IE R+LA + + ++AF + ED Sbjct: 653 -----------ELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDRED 701 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 ++ T A+ F ++V+ +QR I KV+ + Y G ++ S + ++ Sbjct: 702 VHTRTAAETFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYF 761 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + +W E+ + +++ A+ + GTA Sbjct: 762 TRYAGVRRYIEWAVEEARAKGESRTLFGRARAMPEIGAPNPALRNAAERTAINTPIQGTA 821 Query: 503 CELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 ++VK A R + +LQ+ +L E RR Sbjct: 822 ADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELEPVEALVRR 871 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 21/80 (26%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS------ 649 +Q + DI+ M + ++L VHDE+V E P+ V L Sbjct: 817 IQGTAADIVKIAMIRVHDALAQERRAARLLLQVHDELVLEVPERELEPVEALVRREMEGA 876 Query: 650 ---------LMTKNPSWAKG 660 + +WA+G Sbjct: 877 ARLKVPLEVQVGHGQTWAEG 896 >gi|89889486|ref|ZP_01200997.1| DNA polymerase I [Flavobacteria bacterium BBFL7] gi|89517759|gb|EAS20415.1| DNA polymerase I [Flavobacteria bacterium BBFL7] Length = 946 Score = 250 bits (638), Expect = 6e-64, Method: Composition-based stats. Identities = 101/612 (16%), Positives = 196/612 (32%), Gaps = 105/612 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPSDLLQYL 61 D ET PL A + A++W+ P+ DR + L + Sbjct: 378 DTETTGLDPLT----------AELVGIAFSWEKGKGFYLPIPE-DREAAQVIVDQLKPFF 426 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSE 120 ++ V N ++ + K + K + ++LA LA + Sbjct: 427 ESASIEKVGQNLKYDIKVLDKY---GVDVKGPMFDTMLAHYLINPDMRHNMDVLAETYLN 483 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 + + LI + K + D + EY D + T +L + P Sbjct: 484 YTP--QSIVELIGKKGKNQLSMRDVDLEKQ---------KEYAVEDADITLQLKEHFTPE 532 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 D E L + + G +D D + L + + +L++DI ++ Sbjct: 533 LASAGTDKLFKDIEMPLLDVLAAMEIEGINLDEDFLSSLSGDLETDITQLEKDIYEVAGE 592 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + T + + ++ LAKD + + + Sbjct: 593 EF-NIGSPKQLGVILFEKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHAIIQNVLDYRGLS 651 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L V + + T + TGR S QN+P + Sbjct: 652 KLKSTYVDALPNQVDAKTQRIHTNYMQTVAATGRLSSTDPNLQNIPIRTER--------- 702 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR I L+ AD + IE R++A ++ E+ I AF + Sbjct: 703 ---------------GRQVRKAFIPRDENYTLIAADYSQIELRIIAALSEEENMIAAFQS 747 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 GEDI+ +T AK FN ++ V++EQR+ K + + Y G + + Sbjct: 748 GEDIHASTAAKVFNVALEDVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELID 807 Query: 461 QFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLI 499 + + + + ++ AV + Sbjct: 808 TYYATYPKLKAYMQDQVDFARENGYVETVLGRRRYLKDINSSNAVVRGAAERNAVNAPIQ 867 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G+A +++K A H+ E C + + V ++ + K+ + Sbjct: 868 GSAADIIKIAMINIHKKF--------EEMNCKSKMLLQVHDELVFDIHNDELEDMKKLIQ 919 Query: 560 IVLPSSRRLVYS 571 + ++ ++ Sbjct: 920 GEMQNAYKMTVP 931 >gi|229543560|ref|ZP_04432620.1| DNA polymerase I [Bacillus coagulans 36D1] gi|229327980|gb|EEN93655.1| DNA polymerase I [Bacillus coagulans 36D1] Length = 875 Score = 250 bits (637), Expect = 7e-64, Method: Composition-based stats. Identities = 73/492 (14%), Positives = 167/492 (33%), Gaps = 61/492 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + +++ DE+ + +++ + ++ GID+ + +++ Sbjct: 348 AEDALSSEAFKKWVEDESKIKHVYDAKRSIVALRRY-GIDLRGTDF-DLLLVSYLLNPSD 405 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 ++++ + A + KG+ P + A H+ + Sbjct: 406 TVEDFASV----AKTHDYGNVETDEAVYGKGAKRKLPEEKRYAEHISRKAEAIDALCEPC 461 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + +L E L L+ + G ++D D + ++ E ++++ I + Sbjct: 462 TKALKNNGQLELFEQLELPLSLILADMEYTGVKVDTDRLKEMGEEFKLRLHEIEQRIYSM 521 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ ++ ++ T +L IL+ Sbjct: 522 AGTEF-NINSPKQLGVILFEKMGLPVIKKTKTGYSTSADVLEKLEPAHEIVREILHYRQL 580 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + V DG++ ++TGR S QN+P + Sbjct: 581 GKLQSTYIEGLLKVVHQDGKVHTRFN-QALTQTGRLSSTDPNLQNIPIR----------- 628 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G + +D + +E RVLA I+G++ I+AF Sbjct: 629 -------------MEEGRKIRQAFVPSEEGWLIFSSDYSQVELRVLAHISGDEKLIEAFR 675 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T + F+ ++V+ E R K + + Y G ++ G + Sbjct: 676 EGMDIHTKTAMEVFHVKAEEVTSEMRRQAKTVNFGIVYGISDYGLSQNLGISRKEAGEFI 735 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + S + ++ A+ + Sbjct: 736 KRYFASYPRVKEYMDEIVREAKQKGYVSTLLKRRRYLPEITSRNFNLRSFAERTAMNTPI 795 Query: 499 IGTACELVKKAW 510 G+A +++KKA Sbjct: 796 QGSAADIIKKAM 807 >gi|268316907|ref|YP_003290626.1| DNA polymerase I [Rhodothermus marinus DSM 4252] gi|262334441|gb|ACY48238.1| DNA polymerase I [Rhodothermus marinus DSM 4252] Length = 924 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 103/553 (18%), Positives = 187/553 (33%), Gaps = 92/553 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPS 55 + +L ID ET S + A A + A++W+ P L D T + Sbjct: 352 LERLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLE 401 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L LR V N ++ ++ + G+++P + T V LA Sbjct: 402 RLAPILRRAQ-RKVGQNLKYDLVVLAQH-GVEVPPP-YFDTMVAHYLIAPEEPHNLDVLA 458 Query: 116 LNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEA 169 + + + G+ + + PY C + QL D Sbjct: 459 RQYLRYQMVAITELIGSGRDQKSMRDVSIDEVGPYACEDTDIAL--QLADVLAAELDRHG 516 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 R + + + E L + + G ID ++ ++ + + E +L+ I ++ Sbjct: 517 LRHIAE------EMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVAG 570 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ + T + S + +LA L L + Sbjct: 571 VEF-NIGSPQQLADVLFKKLGLKPRART-STGRPSTKESVLQELATQHPLPGLILDWRHL 628 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342 KL + L + GR+ T + TGR S QN+P R E E Sbjct: 629 AKLKSTYVDGLEPLIHPETGRIHTTFN-QTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + G KL+ AD IE R+LA ++G++ +AF Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 G+DI+ T A+ F P ++V+ EQR K++ + Y G A+ + Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 ++++ + + + E+ + AV Sbjct: 783 IEEYQRAFPGVTRYLHRVVEEARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842 Query: 498 LIGTACELVKKAW 510 + GT +++K A Sbjct: 843 IQGTQADMIKLAM 855 >gi|120603488|ref|YP_967888.1| DNA polymerase I [Desulfovibrio vulgaris DP4] gi|120563717|gb|ABM29461.1| DNA polymerase I [Desulfovibrio vulgaris DP4] Length = 1015 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 93/483 (19%), Positives = 157/483 (32%), Gaps = 91/483 (18%) Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 L DIP RW LA P L Sbjct: 537 SHALWRDIPGDRW-FDLGLAAYLLDPEERDYGWPRLAARWGDMLD--------------- 580 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 T + A ++ R A+ + R + E L + + + G Sbjct: 581 -----RSTDNPGLLALEMAQGMAGRLAGASLDTLMRTL-----ELPLVPVLADMEEAGIA 630 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 +D + + E ++ +++ K G + R L LF G+ V + G Sbjct: 631 VDRTAFAAFLDEVQHELDRITQEVYKAAGGQF-NIRSAQQLGELLFGTLGLPTVGKTRGG 689 Query: 260 ---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T + L + DLIL+ L L + V GR+ T A+ Sbjct: 690 QATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDDAGRIHSTFNQL-ATA 748 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + G +RSC A+ G L Sbjct: 749 TGRLSSSNPNLQNIPAR------------------------GDLGRRMRSCFTAAEGNLL 784 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD + IE RVLA ++ + + AF G DI+ T ++T + V+ +QR K + Sbjct: 785 VSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTIN 844 Query: 437 LALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------- 483 L Y G + + + ++++ ++ F D +A + Sbjct: 845 FGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTLAGR 904 Query: 484 ------------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLW 521 ++ Q A+ + G+A +++K A A H +LQ+ Sbjct: 905 RRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVH 964 Query: 522 KDL 524 +L Sbjct: 965 DEL 967 >gi|27383242|ref|NP_774771.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] gi|27356416|dbj|BAC53396.1| DNA polymerase I [Bradyrhizobium japonicum USDA 110] Length = 1023 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 94/544 (17%), Positives = 182/544 (33%), Gaps = 81/544 (14%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW--ICTSVLARTN 103 D+ + + L L ++ + + F ++ + GI + + + + VL Sbjct: 486 DQVKHADAIDALRPVLESSGILKIGFDVKFTAVMLAQH-GITLRNTDDAQLISYVLDAGR 544 Query: 104 GLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFG 160 G SL + + GK I + P A+ ++ W++ Sbjct: 545 GSHGLESLAERWFGHAMLKEGELLGSGKGKITFDQVPIDKAAPLSAEGADMALRVWRVLK 604 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 E +++ L ER L + + RG ID ++ +L AQ ++ Sbjct: 605 PRLV--AEHMTTVYETL------ERPLVAVLARMERRGISIDRQVLSRLSGDFAQTAARV 656 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LIL 279 + +I ++ + + + LF + ++ T + + +LA+ L Sbjct: 657 EAEIQEIAGEPV-NVGSPKQIGDILFGKMSLPGGTKTK-TGAWSTTAQVLDELAEQGHDL 714 Query: 280 NRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + + KL + L E V+ T A+ TGR S QN+P + Sbjct: 715 PKKILEWRQVSKLKSTYTDALPEYVNPQTHRVHTTYALAATTTGRLSSNEPNLQNIPVRT 774 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R IA+ G KLV AD + IE R+LA IA Sbjct: 775 ED------------------------GRKIRRAFIATPGHKLVSADYSQIELRLLAEIAD 810 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 +AF +G DI+ T ++ F PI + E R K + + Y G A Sbjct: 811 IPVLKQAFRDGLDIHAMTASEMFGVPIKGMPSEIRRRAKAINFGIIYGISAFGLANQLGI 870 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 ++++ + + D + ++ + ++ Sbjct: 871 AREEASAYIKKYFERFPGIRAYMDETRDFCRQHGYVTTLFGRKCHYPDIKASNASVRAFN 930 Query: 490 PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSIS 539 A+ +L GTA +++++A Q +LQ+ +L E Sbjct: 931 ERAAINARLQGTAADIIRRAMTRVEDALAEKKLSAQMLLQVHDELIFEVPDAEVEATLPV 990 Query: 540 ARRV 543 + V Sbjct: 991 VQHV 994 >gi|149177359|ref|ZP_01855964.1| DNA polymerase I [Planctomyces maris DSM 8797] gi|148843884|gb|EDL58242.1| DNA polymerase I [Planctomyces maris DSM 8797] Length = 900 Score = 250 bits (637), Expect = 9e-64, Method: Composition-based stats. Identities = 94/551 (17%), Positives = 179/551 (32%), Gaps = 83/551 (15%) Query: 14 QPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPSDLLQYLR----DE 64 L G+ AE A I A +W+ PV+ + + P +L++L+ D Sbjct: 322 VDLETTGL-KPAE-AEIVGWAISWEKHRGFYIPVE-GPSGQLALDPQYVLEHLKPILEDP 378 Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 ++ N ++ ++ + + + G + + + Sbjct: 379 EILITNQNIKYDMVVLMRVGVFLQGVSIDPMVASYLISAGERGHSLDKLSERYLNHTMIP 438 Query: 125 MEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + E GK F Y A AWQL +D L++ L Sbjct: 439 ISELIGSGKQQKKMFEVDVDKVAEYAVEDAEI--AWQL--SRILQDELKHAGLWELYWEL 494 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ER L + + G ++D + + +L+ + L +I ++ + Sbjct: 495 ---ERPLISILAEMEFTGIKVDTAELKQQSQLLEKRLTTLISEIHEIAGHEFNIA-SPLQ 550 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295 LR LF + + ++ S + +LA L + + KL + L Sbjct: 551 LRTVLFEELNLPVFKKTK--TGPSTDQSVLEKLAPLHALPARITEHRHLSKLKSTYLDAL 608 Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 V+ GR+ + A+ TGR S QN+P + Sbjct: 609 PGLVNPETGRIHASFNQVVAA-TGRLSSSDPNLQNIPVRT-------------------- 647 Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R I +L+ AD + IE R+LA ++ + +AF G DI+ Sbjct: 648 ----QEGRQIRKAFIPQDENWRLLCADYSQIELRILAHLSQDVALSQAFREGADIHTAVA 703 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + F P D+V + R K + + Y G ++ S ++ + + Sbjct: 704 SDIFRVPHDQVDSDMRRTAKAVNFGVIYGQSPFGLSEAIGIPQSEAAGFIEDYFVRYQGV 763 Query: 470 STFED------------------WEQAESHHLWMQDQY---PEFAVKDKLIGTACELVKK 508 F D + + +Q Q A+ + G+A +L+K+ Sbjct: 764 REFLDQILEDCAKQKFVETICGRKREIQGVRGGVQKQLNMPERTAINTVIQGSAADLIKQ 823 Query: 509 AWRAKHQGVLQ 519 A + Q Sbjct: 824 AMLNVSDRIKQ 834 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 11/65 (16%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-----GT 646 ++Q + D++ + M N ++ +++ +HDE+V E P T ++ Sbjct: 809 INTVIQGSAADLIKQAMLNVSDRIKQEQHPGRMLMQIHDELVFEVPLTALDTLGLIVREE 868 Query: 647 LCSLM 651 + S M Sbjct: 869 MESAM 873 >gi|257457843|ref|ZP_05623002.1| DNA polymerase I [Treponema vincentii ATCC 35580] gi|257444556|gb|EEV19640.1| DNA polymerase I [Treponema vincentii ATCC 35580] Length = 951 Score = 250 bits (637), Expect = 9e-64, Method: Composition-based stats. Identities = 101/573 (17%), Positives = 178/573 (31%), Gaps = 114/573 (19%) Query: 7 DIETRSPQPL----------PKVGVWAY----AEQAVITLCAYAWDDEPVKLWDRTEQSA 52 D ET PL K G Y A ++P + Sbjct: 378 DCETTGLNPLYDSLVGFSLSLKAGTGIYVPLKAPAPE-------LGEQPFAVMPLAAAKK 430 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSL 109 + + L ++ + V HN F+ + + R T + A L L Sbjct: 431 LLARLWN---NKELTLVLHNGKFDYQVLRTAGVFTRAGCRLFDTMIAAWLLEPDNLSFGL 487 Query: 110 KNACLA-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 +N A L K K C + S P Y D + Sbjct: 488 ENLTEAQLGLQGLDYKDVVPKG-----CTFAAVSLPQATA-------------YAAEDAD 529 Query: 169 ATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 T +L+ P + E L L + +G + + + E +A Sbjct: 530 FTLQLYHVYKPALEQANLTTLFETLEMPLMPLLADMEAQGIFLKKEELAAFSEELAGTLA 589 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 + + +I KL + L+ LF + ++ + +S + +LA Sbjct: 590 RDEAEIYKLVGHPFNIA-SPKQLQEVLFTERKLPTGKKTKTGYSTDIS--VLEELAAIDE 646 Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L A KL + L ++GR+ + G + TGR S QN+P + Sbjct: 647 LPAKILDYRASAKLKSGYADALPLLADANGRIHTSFIQTG-TATGRLSSRDPNLQNIPIR 705 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 G +R A++G KL+ AD A IE +LA + Sbjct: 706 ------------------------GEEGRKIRKAFYAADGCKLISADYAQIELVILAHFS 741 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 ++ +KAF G D++ T A FN P++ V + R I KV+ + Y A + Sbjct: 742 QDENLVKAFRQGTDVHAATAALIFNVPVENVVPDMRRIAKVINFGVMYGMSAFRLANQLR 801 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQ 488 + + ++ + F + S + + Sbjct: 802 ISRTEAADFITRYFTTYSGVAAFMETLKESAAEKGFVETLMGRRRYIRAINSRNQTQRAA 861 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A+ + G+A ++VK A + + + Sbjct: 862 AERIAINTPIQGSAADIVKTAMLHVDRALKRQH 894 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 6/55 (10%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 +Q + DI+ M + + ++L VHDE++ E PD+ SV L Sbjct: 871 IQGSAADIVKTAMLHVDRALKRQHLSAHLLLQVHDELILEAPDSEVDSVKALLKQ 925 >gi|255534095|ref|YP_003094467.1| DNA polymerase I [Pedobacter heparinus DSM 2366] gi|255347079|gb|ACU06405.1| DNA polymerase I [Pedobacter heparinus DSM 2366] Length = 939 Score = 249 bits (636), Expect = 9e-64, Method: Composition-based stats. Identities = 87/544 (15%), Positives = 173/544 (31%), Gaps = 94/544 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113 + L +E ++ + N ++ ++ K I K + ++LA + Sbjct: 413 EEFRPVLENENIVKIGQNIKYDMLILK---WYGISVKGRLFDTMLAHYLIDPDTRHNMDV 469 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ N+ + +G++ P + +Y D + T +L Sbjct: 470 LSENYLNYSPISITTLIGPKGKSQGTMRDVPV-----------EKVVDYAAEDADITLQL 518 Query: 174 FKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 PL + E L + I G RID+D ++ + + + +K ++ Sbjct: 519 ANVFEPLLKQLNAEKLATEVENPLIYVLADIEKEGVRIDMDTLINYSKELELDIRKFEQS 578 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----I 278 + + L LF +D T + + LA I Sbjct: 579 VYDKCGIKFNLA-SPKQLGEVLFDKLQLDPKAKKTKTGQYQTGEDVLLALAHKSDIVQDI 637 Query: 279 LNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ ++ L V+ GR+ + + TGR S QN+P + Sbjct: 638 LDFRQLQKLKSTYVDALPLLVNPKTGRVHTSFN-QAVAATGRLSSNNPNLQNIPIRTER- 695 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396 VR I L+ AD + IE R++A I+ E+ Sbjct: 696 -----------------------GREVRKAFIPRDENHILLSADYSQIELRIIADISKEE 732 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMA 452 + AF NG DI+ T A+ + I++V+ QR K + + Y A + Sbjct: 733 NMLDAFKNGIDIHTATAARVYGIAIEEVTPTQRRNAKAVNFGIIYGQSAFGLSQNLGIPR 792 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 ++Q+ + + + ++ Sbjct: 793 KEAAEIIEQYFTQYPGIKRYMSDTMNFARENGFVETILGRRRYLRDINSANQTVRGFAER 852 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLT-EGFACVVQEGGSISA 540 A+ + G+A +++K A H+ + +Q+ +L + V+ I A Sbjct: 853 NAINAPIQGSAADMIKVAMINIHKDIQDQGLQSKMTMQVHDELVFDVLKSEVEAMKKIIA 912 Query: 541 RRVA 544 R+ Sbjct: 913 HRMK 916 >gi|116749047|ref|YP_845734.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] gi|116698111|gb|ABK17299.1| DNA polymerase I [Syntrophobacter fumaroxidans MPOB] Length = 902 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 92/483 (19%), Positives = 169/483 (34%), Gaps = 74/483 (15%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP------SSLKNACLALNFSEH 121 + H+ I+FKK GI++ + T V A + CL N + Sbjct: 391 KIGHDLKTAWIVFKKH-GIELRGIAF-DTMVAAYLLDPGKQNYGIDRVAAECLGENIDSY 448 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--ELFKRLIP 179 +GK+ + +ID A + KR ++ +R ELF+++ Sbjct: 449 EDVTGKGKSQVGF---DTIDIGRAAAYSCAAADAARRMHPVLKRKLDESRLTELFEKI-- 503 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E L + + RG D + + L + + + I L + + Sbjct: 504 ----ELPLITVLARMEFRGITADAEKLESLSIDFQKALDRTADTIYDLAKEKF-NIQSPK 558 Query: 240 ALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF G+ +V ++ T ++L + D +L + + L Sbjct: 559 QLAYILFEKLGLRVVKKTKSGPSTDMAVLEELALEHPIADHVLVFRTLAKLKGTYADALG 618 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + ++ GR+ + A+ TGR S QN+P + Sbjct: 619 KLINPRTGRIHTSYNQTVAA-TGRLSSSDPNLQNIPIRT--------------------- 656 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +RS I + G L+ AD + IE R+LA + ++ ++AF + EDI+ T A+ Sbjct: 657 ---EEGRKIRSAFIPAPGWLLLSADYSQIELRILAHCSKDEHLLEAFRDDEDIHRRTAAE 713 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTST 471 F +V+ E R K + + Y G A+ + + ++ Q + Sbjct: 714 MFGVSPIEVTPEMRRQAKTINFGIIYGMGPFGLAQRLRISTKTARTAIDKYFQGYRGVRR 773 Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 F D + +S + ++ A+ L GTA +L+KKA Sbjct: 774 FIDTTIELARRLGYSETLLGRRRFIPELQSRNKTIRQLGERLAINTPLQGTAADLIKKAM 833 Query: 511 RAK 513 Sbjct: 834 IDA 836 Score = 53.2 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 16/142 (11%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN---TATSQLMRERTYGG 595 +AR + R +R + + +RRL YS+ + ++ +R+ G Sbjct: 756 TARTAIDKYFQGYRGVRRFIDTTIELARRLGYSETLLGRRRFIPELQSRNKTIRQL--GE 813 Query: 596 KLTENI-VQAISRDILCEGMKNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGTLC 648 +L N +Q + D++ + M +A G V+ VHDE+V ETP + L Sbjct: 814 RLAINTPLQGTAADLIKKAMIDAEDALNGSGLRTVMLLQVHDELVFETPREELAAAQELV 873 Query: 649 -SLMTKNPSWAKGLPLKAE-GY 668 +M W +PLK E G+ Sbjct: 874 RRVMEDV--WKLDVPLKVELGW 893 >gi|51244939|ref|YP_064823.1| DNA polymerase I [Desulfotalea psychrophila LSv54] gi|50875976|emb|CAG35816.1| probable DNA polymerase I [Desulfotalea psychrophila LSv54] Length = 889 Score = 249 bits (636), Expect = 1e-63, Method: Composition-based stats. Identities = 103/588 (17%), Positives = 187/588 (31%), Gaps = 97/588 (16%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDL----- 57 ID ET S G+ I+LCA D P+ + T + +P L Sbjct: 318 IDTETTS-LDARTAGL------VGISLCA-ELDRAWYIPLAHIEAT-GTPVPGQLPISEV 368 Query: 58 ----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L ++ V HN ++ + K G++I + G L + C Sbjct: 369 MAVLEPLLTCADILKVGHNLKYDWTVLKMQTGVEIFPLADTMVAAHLLEKGRTLKLDDLC 428 Query: 114 L--ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEAT 170 L + + E K A ++ Y C + WQ FGE Sbjct: 429 AEIGLELTSFAEVVAEDKRADAFAYVALKEACHYSCEDVYGALSLWQDFGEKLSD----- 483 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + L D E + + + G +D ++++L ++ +L I + Sbjct: 484 KALDGLFY---DVEMPIIPVLAKMEIGGVCLDSTVLVELAAQFEEQIGELAATIYQEVGH 540 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF G+ ++ + +LA + L I Sbjct: 541 EF-NISSPKQLGVILFEELGLPHGRKTKTGF--STDVKVMEKLASQHPVPALILKYRTIA 597 Query: 291 KLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L GR+ + + TGR S QN+P + Sbjct: 598 KLKSTYVDKLLLLKNPETGRIYTSFN-QTITATGRLSSSNPNMQNIPIR----------- 645 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 + +R + GK + AD + I+ RVLA +G+D +AFA Sbjct: 646 -------------MEEGNRIRRAFVPEAGKVFLAADYSQIDLRVLAHYSGDDALTRAFAA 692 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G+DI+ T A+ F+ V+ E R + K + + Y A+ + Sbjct: 693 GQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMSAFGLAQQLGIGRKEAQRFID 752 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 ++ F ++ + M++ A+ + Sbjct: 753 RYFHLYAGVKQFMIDIVEQTRERGYATTLLGRRRAVPDIDAKNKGMREFAERMAINTPIQ 812 Query: 500 GTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISAR 541 GTA +++K A A + + ++ + + V E R Sbjct: 813 GTAADIIKCAMIAVEKKLAAAGLGAKMLLQIHDELVFEVSEAELAETR 860 Score = 41.3 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 63/175 (36%), Gaps = 20/175 (11%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT-------EGFACVVQEG-GSISARRVA 544 A +D TA EL + + + ++ K + F Q G G A+R Sbjct: 692 AGQDIHARTAAELFSVSTMLVNPEMRRVAKSINFGIVYGMSAFGLAQQLGIGRKEAQRFI 751 Query: 545 NVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL---NTATSQLMRERTYGGKLTENI 601 + + K+ + ++ +R Y+ A ++ MRE + ++ N Sbjct: 752 DRYFHLYAGVKQFMIDIVEQTRERGYATTLLGRRRAVPDIDAKNKGMRE--FAERMAINT 809 Query: 602 -VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K G ++L +HDE+V E + + Sbjct: 810 PIQGTAADIIKCAMIAVEKKLAAAGLGAKMLLQIHDELVFEVSEAELAETRVVVQ 864 >gi|46445857|ref|YP_007222.1| DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] gi|46399498|emb|CAF22947.1| probable DNA polymerase I [Candidatus Protochlamydia amoebophila UWE25] Length = 891 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 111/566 (19%), Positives = 189/566 (33%), Gaps = 102/566 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-----EQSAMPSD 56 ++ +D ET +PL L EP K W + S Sbjct: 322 KEICLDTETTDLRPL------------EAQLVGIGLGVEPKKAWYIPLNGQLNGDFVLSQ 369 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + ++ HN ++ + + +I ++LA L S + L Sbjct: 370 LKPLLENPSIGFYGHNFKYDYHVLRNH---NISVANISFDTILASYL-LNSHKRQHSLDH 425 Query: 117 NFSEHLTKME-EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 E K++ + LI + K ++ + H YC DV+ T L Sbjct: 426 LALELFDKVKIAIQELIGK-GKNQLNMKNVALDKICH---------YCCEDVDYTIRLKN 475 Query: 176 RLIPLSDGERDL-----------WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L+ + ER L + + G ID + L + I QE L+++I Sbjct: 476 ILLSQLE-ERKLTSLLFDLELPLLSVLAQMERNGIFIDTAYLKHLSQFIGQEIHCLEQNI 534 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---SEGTLKSILS-HSNITQLAKDLILN 280 L I + L LF GI T +L ++ +A+ L+ Sbjct: 535 YALAGE-IFNLNSPKQLSQILFHKLGIKPPKKIATGHSTNAEVLEILKHVYPIAEKLLEY 593 Query: 281 RLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 R + +N+L V+ GR+ A+ TGR S QN+P + Sbjct: 594 RTLEKLRST-YVNSLPLQVNAKTGRIHCNFNQSMAA-TGRLSCQDPNLQNIPVRT----- 646 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + AD + IE R+LA ++ + Sbjct: 647 -------------------EVGRQIREAFRPEKEDWSYLSADYSQIELRLLAHLSEDPVL 687 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 IKAF + EDI+ T + F+ P+ +VS EQR K + L Y G A Sbjct: 688 IKAFLSNEDIHKYTASLIFDVPLQQVSSEQRYQAKAVNFGLIYGQQAFGLAHELGIDTKT 747 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 +Q++ + F + + S + ++ FA Sbjct: 748 AAAFIQRYFERYGKVKEFLEACKQSARETGKAVTMYGRERLLPEIRSQNAMIRATADRFA 807 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQ 519 V + GT +L+K A ++ ++Q Sbjct: 808 VNTPIQGTQADLIKMAMLKINKLLIQ 833 Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 8/59 (13%) Query: 598 TENIVQAISRDILCEGMKNA-------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q D++ M K G+ I L +HDE++ E P+ S+ L Sbjct: 808 VNTPIQGTQADLIKMAMLKINKLLIQEKKKGFMI-LQIHDELIFEVPNQELESISHLVK 865 >gi|313885797|ref|ZP_07819541.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] gi|312924751|gb|EFR35516.1| DNA-directed DNA polymerase [Porphyromonas asaccharolytica PR426713P-I] Length = 948 Score = 249 bits (635), Expect = 1e-63, Method: Composition-based stats. Identities = 92/530 (17%), Positives = 183/530 (34%), Gaps = 63/530 (11%) Query: 32 LCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 LCA + L + E++A + S L ++DE V+ VAHN+ F+ + + +P Sbjct: 380 LCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVAHNAKFDLEVLTRY---GLPE 436 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TR 149 + ++LA ++ + + E L+ D P + Sbjct: 437 AHPLYDTMLAHYL------------IDADQGHSLDELAGGLLRYDTIRYKDLAPQESFAL 484 Query: 150 ANHVQAWQLFGEYCKRDVEATRELF----KRLIP-----LSDGERDLWLLDQTINDRGYR 200 V +L +Y D T L+ K+L P L++ E L + + RG Sbjct: 485 RTDVDP-KLLCDYASEDAYVTLRLYHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIV 543 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEG 259 +D++ + + ++ + + +L+++I + + + LF I Sbjct: 544 LDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTK 603 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGA 314 T + + + L + L KL + L + DG+L + Sbjct: 604 TGNYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAV 662 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + L + A I G Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPI----GA 718 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + +E RV+A ++ + I +F +G+DI+ T AK F ++V+ R+ K Sbjct: 719 VLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKT 778 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY- 489 + Y G ++ ++++ F + A + + Sbjct: 779 ANFGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNKAIALATERGYTETAF 838 Query: 490 --------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +++K A + + + Sbjct: 839 GRRRQLRNLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTK 888 >gi|92116074|ref|YP_575803.1| DNA polymerase I [Nitrobacter hamburgensis X14] gi|91798968|gb|ABE61343.1| DNA polymerase I [Nitrobacter hamburgensis X14] Length = 1014 Score = 249 bits (635), Expect = 2e-63, Method: Composition-based stats. Identities = 95/490 (19%), Positives = 162/490 (33%), Gaps = 71/490 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + V N F +L + GI + + + A G + A Sbjct: 488 LKPLLESGGHLKVGFNVKFTAVLLAQH-GIVMQNNDDVELISYALDAGRGAHDLEALAQR 546 Query: 117 NFSEHLTKMEE--GKALIAR-FCKGSID--SPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 E G F + +ID + A ++ WQ+ E Sbjct: 547 WLDHTALNYGELIGSGRNKLAFDQVTIDRATTYAAEYAALTLRLWQVLKPRLV--AERMN 604 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +++ L ER + + RG ID ++ +L AQ +L+ +I KL Sbjct: 605 SVYETL------ERPMIATLARMERRGITIDRQVLSRLSGEFAQTAARLEAEIQKLAGEP 658 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290 I + + +F G+ ++ T S + LA+ R + Sbjct: 659 I-NVGSPKQIGEIMFGKMGLPGGSKTK-TGAWSTSAQILDDLAEQGHDFPRKILDWRQVS 716 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L E V+ T A+ TGR S QN+P Sbjct: 717 KLKSTYTDALPEYVNPQTSRVHTTYALAATTTGRLSSNEPNLQNIP-------------- 762 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA+ G KLV AD + IE R+LA IA +AF +G Sbjct: 763 ----------VRNEEGRKIRRAFIATPGHKLVSADYSQIELRLLAEIADIPVLKQAFRDG 812 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T ++ F P+ + E R K + + Y G A G +++ Sbjct: 813 LDIHAMTASEMFGVPVTGMPGEIRRRAKAINFGIIYGISAFGLANQLGIPREEAGTYIKK 872 Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500 + + + D + +S + + A+ +L G Sbjct: 873 YFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKSPNPSHRAFNERAAINARLQG 932 Query: 501 TACELVKKAW 510 TA +++++A Sbjct: 933 TAADIIRRAM 942 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655 Q + DI+ M ++L VHDE++ E PD ++ + +M P Sbjct: 931 QGTAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDDEVAATLPVVQHVMQDAP 990 >gi|139437104|ref|ZP_01771264.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] gi|133776751|gb|EBA40571.1| Hypothetical protein COLAER_00242 [Collinsella aerofaciens ATCC 25986] Length = 916 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 75/399 (18%), Positives = 143/399 (35%), Gaps = 68/399 (17%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G +D D + L E +A + +++ I L + L Sbjct: 515 IEMPLVPVLAKMERAGMLVDPDRLHSLSEGLATQITEVERSIRDLAGDETFNIGSPMQLS 574 Query: 243 MYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILK-----LNTLS 296 LF + G+ + + + ++ LA+D + RL K L+TL Sbjct: 575 HVLFDVMGLPTKGLKKTKRGYYSTNAKVLSDLARDHEIVRLILDWREKSKIKSTYLDTLG 634 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ T + TGR S QN+P + Sbjct: 635 PLRRGDGRVHTTYN-QTITATGRLSSSDPNLQNIPTRS---------------------- 671 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 V++ A G + D + IE R+LA ++G++ ++AF GED + T A+ Sbjct: 672 --ELGRTVKTAFSAGEGSVFLAVDYSQIELRLLAHLSGDEHLVRAFNEGEDFHAETAARV 729 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P+ +V+ + R+ K + + Y G ++ + + ++ + TF Sbjct: 730 FGVPVSEVTPDLRSRAKAVNFGIVYGQQAYGLSQSLHISMAEARDMIDRYYEAYPGVRTF 789 Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D + ++ + ++ A+ + GTA +++K A Sbjct: 790 LDNVVARAKQTGYAETMYGRRRHIPELKAKNPQLRGFGERTAMNHPMQGTAADIIKIAMA 849 Query: 512 AKHQG----------VLQLWKDLTEGFACVVQEGGSISA 540 + +LQ+ +L F C V E ++A Sbjct: 850 RVSRRLEEEGFAAHMILQVHDELD--FECPVDEVERLTA 886 >gi|4090935|gb|AAC98908.1| DNA polymerase type I [Rhodothermus sp. 'ITI 518'] Length = 924 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 102/553 (18%), Positives = 187/553 (33%), Gaps = 92/553 (16%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPS 55 + +L ID ET S + A A + A++W+ P L D T + Sbjct: 352 LERLAIDTETTSTE----------AMWASLVGIAFSWEKGQGYYVPTPLPDGTPTETVLE 401 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L LR V N ++ ++ + G+++P + T V LA Sbjct: 402 RLAPILRRAQ-RKVGQNLKYDLVVLAQH-GVEVPPP-YFDTMVAHYLIAPEEPHNLDVLA 458 Query: 116 LNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR-DVEA 169 + + + G+ + + PY C + QL D Sbjct: 459 RQYLRYQMVAITELIGSGRDQKSMRDVSIDEVGPYACEDTDIAL--QLADVLAAELDRHG 516 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 R + + + E L + + G ID ++ ++ + + E +L+ I ++ Sbjct: 517 LRHIAE------EMEFPLIEVLADMERTGICIDRTVLREIGKQLEAELHELEAKIYEVAG 570 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ + T + S + +LA L L + Sbjct: 571 VEF-NIGSPQQLADVLFKKLGLKPRART-STGRPSTKESVLQELATQHPLPGLILDWRHL 628 Query: 290 LKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342 KL + L + GR+ T + TGR S QN+P R E E Sbjct: 629 AKLKSTYVDGLEPLIHPETGRIHTTFN-QTVTATGRLSSSNPNLQNIPVRTEMGRE---- 683 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + G KL+ AD IE R+LA ++G++ +AF Sbjct: 684 ---------------------IRRAFVPRPGWKLLSADYVQIELRILAALSGDEALRRAF 722 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 G+DI+ T A+ F P ++V+ EQR K++ + Y G A+ + Sbjct: 723 LEGQDIHTATAARVFKVPPEQVTPEQRRRAKMVNYGIPYGISAWGLAQRLRCSTREAQEL 782 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDK 497 ++++ + + + ++ + AV Sbjct: 783 IEEYQRAFPGVTRYLHRVVEKARQKGYVETLLGRRRYVPNINSRNRAERSMAERIAVNMP 842 Query: 498 LIGTACELVKKAW 510 + GT +++K A Sbjct: 843 IQGTQADMIKLAM 855 >gi|71064954|ref|YP_263681.1| DNA polymerase I [Psychrobacter arcticus 273-4] gi|71037939|gb|AAZ18247.1| DNA polymerase I [Psychrobacter arcticus 273-4] Length = 956 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 96/568 (16%), Positives = 186/568 (32%), Gaps = 97/568 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSD------ 56 ID ET S Y QA + ++A T E + Sbjct: 364 IDTETTS----------VYWRQAELVGLSFAVQAHEAYYIPLTHSLEGDELTEKQLDRDT 413 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKT-----LGIDIPSKRWICTSVLART--NGL 105 L L + ++ + + ++ + I W ++LA N Sbjct: 414 VLVRLKSILENSSIGKIGQHLKYDAHILSLYDINLLGNIHDKPNNWAMDTMLASYVINAA 473 Query: 106 PSSLKNACLALNFSEHLT---KMEEGKALIA-RFCKGSID-SPPYDCTRANHV-QAWQLF 159 + LA ++ + T + GK F + +ID + Y C A+ Q ++LF Sbjct: 474 VTRHGMDDLARHYLQTQTISFEDVAGKGAKQVSFDQVAIDIASDYACEDADITYQLFELF 533 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 + D + L IP ++ + + G I + +L + +E Sbjct: 534 SQKLADDTNNAKLLHALEIPTAE-------ILCQMEAHGILIKRPFLNELSKRFDEEIIA 586 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L++ ++ + L LF G+ ++ T + + ++++ L+ Sbjct: 587 LEKRAYEVAGEEF-NLGSPKQLGEMLFDKLGVAGGKKTK-TGQYSTGEAVLSKIDHPLVD 644 Query: 280 NRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L G + LK + L S+ T + TGR S QN+P + + Sbjct: 645 ITLEYRGLSKLKSTYTDALDNVADSETDRVHTSYHQALTSTGRLSSTDPNLQNIPIRTAT 704 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R IA G+ ++ AD + IE R++A +G+ Sbjct: 705 ------------------------GRLIRQAFIAPEGRVILAADYSQIELRLMAHFSGDK 740 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 AF G DI+ T A+ + V+ +R K + L Y AK + Sbjct: 741 NLTHAFNEGLDIHAATAAEVLGKEVADVTATERRNAKAINFGLLYGMSAFGLAKQLQMSR 800 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 S + + + + +A ++ + ++ Sbjct: 801 SEAQDYIDMYFERYPGVKDYMINTRASAYEHGYVETILGRKLYTPDINHSNRMVKQGAER 860 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ L G+A +L+K A A + + + Sbjct: 861 AAINAPLQGSAADLIKLAMIAVDKVLPK 888 >gi|149278281|ref|ZP_01884419.1| DNA polymerase I [Pedobacter sp. BAL39] gi|149231047|gb|EDM36428.1| DNA polymerase I [Pedobacter sp. BAL39] Length = 937 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 88/550 (16%), Positives = 175/550 (31%), Gaps = 100/550 (18%) Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 + + L +E + + N ++ ++ K G++I K + T + + Sbjct: 408 PILDEFKVVLENENIAKIGQNIKYDMLILK-WYGLEIKGKLF-DTMLAHYLIDPDTRHNM 465 Query: 112 ACLALNF----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L+ N+ +TK+ K G++ P +Y D Sbjct: 466 DVLSENYLCYSPISITKLIGPKGKNQ----GNMRDVPVA-----------QVVDYAAEDA 510 Query: 168 EATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T +L P+ + E L + I G RID++ ++ + + + Sbjct: 511 DVTLQLANVFRPMLKDLNAEQLATEVENPLIYVLADIESEGVRIDIETLVNYSKELETDI 570 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +K ++++ + L LF +D T + + LA Sbjct: 571 RKFEKNVYDKCGVEFNLA-SPKQLGEVLFDRLQLDPKAKKTKTGQYQTGEDVLLALASKS 629 Query: 278 -----ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 IL+ ++ L V+ GR+ + + TGR S QN+P Sbjct: 630 DIVQDILDFRQLQKLKSTYVDALPLLVNPKTGRVHTSYN-QAVAATGRLSSNNPNLQNIP 688 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390 + VR I L+ AD + IE R++A Sbjct: 689 IRTER------------------------GREVRRAFIPRDENHVLLSADYSQIELRIIA 724 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----K 446 I+ E+ ++AF G DI+ T AK + I++V+ QR K + + Y A + Sbjct: 725 DISKEENMLQAFNQGLDIHTATAAKVYGVAIEEVTSTQRRNAKAVNFGIIYGQSAFGLSQ 784 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485 + Q+ + + + + Sbjct: 785 SLGIPRKEAAEIIDQYFTQYPGIKKYMSDTMNFARENGFVETILGRRRYLRDINSANQTV 844 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT-EGFACVVQE 534 + A+ + G+A +++K A H+ +Q+ +L + V E Sbjct: 845 RGFAERNAINAPIQGSAADMIKVAMINIHKDMNARGMKSKMTMQVHDELVFDVLKTEVDE 904 Query: 535 GGSISARRVA 544 I + R+ Sbjct: 905 MKEIISHRMK 914 >gi|317504364|ref|ZP_07962348.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] gi|315664486|gb|EFV04169.1| DNA-directed DNA polymerase I [Prevotella salivae DSM 15606] Length = 920 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 94/594 (15%), Positives = 184/594 (30%), Gaps = 118/594 (19%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL-- 61 L +D ET S + +A + +A ++ A+P+D Q L Sbjct: 350 LSLDTETTSTDAI----------EAELVGLCFAVEEHKAFYV------AIPNDRKQALQY 393 Query: 62 --------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNA 112 D +++ + N ++ + K G+ + K + ++LA P Sbjct: 394 VNIFKSVYEDPSILKIGQNIKYDYEVLKNY-GVTLQGK--MFDTMLAHYVLQPELRHNMD 450 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 +A + T E LI K A EY D + T + Sbjct: 451 YMAETLLNYKTIHIE--ELIGAPGKHQKSMRDIAPEDA---------YEYGAEDADITLQ 499 Query: 173 LFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L L P D E L + + G R+D + E+ + +L+ Sbjct: 500 LRNVLEPKLKEVAMEALFWDIETPLIPVLADMELNGVRVDTATLHDTAEIFTERMNRLER 559 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 I + + + LF I T + + + + L + Sbjct: 560 HIYEEAGETFNIA-SPKQVGDILFGKLQIMEKPKKTKTGQYVTNEEVLQSLRAKNPIVED 618 Query: 283 ASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + + KL L + + + + + TGR S QN+P + Sbjct: 619 ILAHRGLKKLLGTYVEALPKLIHKRTQHIHTSFN-QALTATGRLSSSDPNLQNIPVRSED 677 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R C + G AD + IE R++A ++G++ Sbjct: 678 ------------------------GKEIRKCFVPEPGCLFFSADYSQIELRIMAHLSGDE 713 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+AF G DI+ T AK ++ I V+ E+R K + Y G A+ Sbjct: 714 NMIEAFREGFDIHAATAAKIWHKQIADVTPEERKKAKQANFGIIYGITTYGLAQRMGIDN 773 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + ++ + + + + E+ + ++ Sbjct: 774 KEARMLIEDYFTTFPKVKAYMEQAKEEARQKGYAVTLFGRRRYLPDINSKNGTVRGFAER 833 Query: 492 FAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535 A+ + G+ +++K A + + +LQ+ +L +E Sbjct: 834 NAINAPIQGSEADIIKIAMIRIWQRFKAENIRSKMILQVHDELNFSVYPEEKER 887 >gi|260439053|ref|ZP_05792869.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] gi|292808509|gb|EFF67714.1| prophage LambdaSa04, DNA polymerase [Butyrivibrio crossotus DSM 2876] Length = 239 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 78/288 (27%), Positives = 116/288 (40%), Gaps = 61/288 (21%) Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +K F DIY + + F+ P++K V+ R GK+ ELALGY G + Sbjct: 1 MKVFKENGDIYCASASAMFHVPVEKHGVNGHLRQKGKIAELALGYGGSVGALTAIG---- 56 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 A+ L + + +WRA + Sbjct: 57 ------------------------------------ALDTGLSEDELQPLVDSWRASNPN 80 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 ++Q W D+ +++ + + V + IVLPS RRL Y K Sbjct: 81 IVQFWWDVDRCVKTAIKQRTATETHGIRFV------YQNGILFIVLPSGRRLCYVKPKIG 134 Query: 577 CSYLNTAT---------SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLT 627 + + + R +YG K ENIVQAISRDILC M+ T + IV Sbjct: 135 ENKFGGESVTYEGVGTNKKWGRIESYGPKFVENIVQAISRDILCHSMR--TLSHCFIVGH 192 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 VHDE++ ETP + +C + + P W GL L+A+GYE Y+K Sbjct: 193 VHDELIIETPMDADLTA--ICEQIGRTPKWIYGLLLRADGYETAFYKK 238 >gi|46578911|ref|YP_009719.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|46448323|gb|AAS94978.1| DNA polymerase I [Desulfovibrio vulgaris str. Hildenborough] gi|311232769|gb|ADP85623.1| DNA polymerase I [Desulfovibrio vulgaris RCH1] Length = 1015 Score = 248 bits (634), Expect = 2e-63, Method: Composition-based stats. Identities = 92/483 (19%), Positives = 158/483 (32%), Gaps = 91/483 (18%) Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 + DIP RW LA P L Sbjct: 537 SHAIWRDIPGDRW-FDLGLAAYLLDPEERDYGWPRLAARWGDMLD--------------- 580 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 T + A ++ R A+ + R + E L + + + G Sbjct: 581 -----RSTDNPGLLALEMAQGMAGRLAGASLDTLMRTL-----ELPLVPVLADMEEAGIA 630 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG- 259 +D + + E ++ +++ K G + R L LF G+ V + G Sbjct: 631 VDRTAFAAFLDEVQHELDRITQEVYKAAGGQF-NIRSAQQLGELLFGTLGLPTVGKTRGG 689 Query: 260 ---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 T + L + DLIL+ L L + V + GR+ T A+ Sbjct: 690 QATTSQDALEKLSGRHPVVDLILDFRKLEKLRSTYLEPLPKLVDAAGRIHSTFNQL-ATA 748 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + G +RSC A+ G L Sbjct: 749 TGRLSSSNPNLQNIPAR------------------------GDLGRRMRSCFTAAEGNLL 784 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD + IE RVLA ++ + + AF G DI+ T ++T + V+ +QR K + Sbjct: 785 VSADYSQIELRVLAHMSQDPTLLAAFREGADIHRRTAGLLYDTAPEDVTPDQRRNAKTIN 844 Query: 437 LALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------- 483 L Y G + + + ++++ ++ F D +A + Sbjct: 845 FGLIYGMGPQKLGQELRITVNEAKQFIERYFSRLQHLRNFYDNVEAAAREQGHVTTLAGR 904 Query: 484 ------------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLW 521 ++ Q A+ + G+A +++K A A H +LQ+ Sbjct: 905 RRLLPEMHSENTQLRSQARRQAINTLIQGSAADIIKLAMLAAHDDPVLHGLKARLILQVH 964 Query: 522 KDL 524 +L Sbjct: 965 DEL 967 >gi|332177299|gb|AEE12989.1| DNA polymerase I [Porphyromonas asaccharolytica DSM 20707] Length = 948 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 92/530 (17%), Positives = 183/530 (34%), Gaps = 63/530 (11%) Query: 32 LCAYAWDDEPVKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 LCA + L + E++A + S L ++DE V+ VAHN+ F+ + + +P Sbjct: 380 LCADEQQAYFIPLPESAEEAAHILSPLKDLMQDERVLKVAHNAKFDLEVLTRY---GLPE 436 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TR 149 + ++LA ++ + + E L+ D P + Sbjct: 437 AHPLYDTMLAHYL------------IDADQGHSLDELAGGLLRYDTIRYKDLAPQESFAL 484 Query: 150 ANHVQAWQLFGEYCKRDVEATRELF----KRLIP-----LSDGERDLWLLDQTINDRGYR 200 V +L +Y D T L+ K+L P L++ E L + + RG Sbjct: 485 RTDVDP-KLLCDYASEDAYVTLRLYHALHKQLSPTEQRLLTEVEIPLLYVLMHMEQRGIV 543 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEG 259 +D++ + + ++ + + +L+++I + + + LF I Sbjct: 544 LDIEALQRSRQELLESVLRLEKEIQSYSSRGLNLKVNSPKQIGELLFDELKIMEKPRKTK 603 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGA 314 T + + + L + L KL + L + DG+L + Sbjct: 604 TGNYVTNEETLLPLRSLHPVVALILDYREARKLLNTYIDPLPKMCYPDGKLHTSYN-QAV 662 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + L + A I G Sbjct: 663 TATGRLSSSNPNLQNIPIRSDLGRPLRRAFVADPYYTPRLSACTPVDHTHEEPI----GA 718 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + +E RV+A ++ + I +F +G+DI+ T AK F ++V+ R+ K Sbjct: 719 VLLSADYSQVELRVMAHLSQDPAMIHSFLSGDDIHTATAAKVFKVAPEEVTPLMRSKAKT 778 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY- 489 + Y G ++ ++++ F + A + + Sbjct: 779 ANFGINYGITPYGLSQRLNIPVGEAAELIKEYFATFTHIQAFMNEAIALATERGYTETAF 838 Query: 490 --------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +++K A + + + Sbjct: 839 GRRRQLRNLRTARGAQRGNEERNAINAPIQGTAADIIKIAMIRVEEELTK 888 >gi|193212192|ref|YP_001998145.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] gi|193085669|gb|ACF10945.1| DNA polymerase I [Chlorobaculum parvum NCIB 8327] Length = 950 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 97/548 (17%), Positives = 181/548 (33%), Gaps = 91/548 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS------DLL 58 +D ET S + L ++ EP + + L Sbjct: 380 SVDTETTS------------LDTFEAELAGISFSLEPGEAFFVYFGETGLDAKTTVAKLK 427 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-NACLALN 117 L + + N ++ ++ K G+++ + T + + S + AL+ Sbjct: 428 PLLENPEIGKTGQNLKYDILVLKNY-GVELQPVEF-DTMLASYVLDPESRHNLDDMAALH 485 Query: 118 FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 S K +E GK+ I F Y C A+ L GE + +EAT EL Sbjct: 486 LSRQTVKYDELVGTGKSAIGIFEVEPQKLSDYACQDADITLK--LRGELAAK-LEATPEL 542 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L E L + + +G ID + + KL + +E L E I + Sbjct: 543 LEVCRTL---EFPLVRVLADMEHQGVSIDTEHLAKLAVKVNEELVGLTERIHEAAGETF- 598 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + + ++ ++ + + + +A +++ R + Sbjct: 599 NIDSPKQLGHILFDVLKLPTKKATKTGYSTNVQVLEELALLNPIAAEVLEYR-SLQKLKG 657 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + + GRL + + TGR S QN+P + Sbjct: 658 TYIEALPKLLHAATGRLHTSFN-QSITATGRLSSSNPNLQNIPIRT-------------- 702 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R I S L+ AD + IE RV A ++G+ I+AF N ED Sbjct: 703 ----------DLGKEIRRAFIPSNPENLLLSADYSQIELRVAAELSGDPMLIEAFRNHED 752 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T F+T D+V+ + R K + + Y G ++ + + Sbjct: 753 IHAATARVIFDT--DEVTSDMRRKAKEVNFGVLYGIQPFGLSQRLGIPQKEAKEIIDTYM 810 Query: 464 QNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTA 502 + E+ L ++ + + GTA Sbjct: 811 AKYPGMFSALQTTVEEARKLGYVTTLMGRRRYVPDLNSPNGNIRKAAERVTMNTPIQGTA 870 Query: 503 CELVKKAW 510 +++K A Sbjct: 871 ADIIKYAM 878 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 14/122 (11%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 A+ + + + + +R+L Y L K Sbjct: 801 EAKEIIDTYMAKYPGMFSALQTTVEEARKLGYVTTLMGRRRY---VPDLNSPNGNIRKAA 857 Query: 599 ENIV-----QAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTL 647 E + Q + DI+ M + + + V+ VHDE++ ETP + L Sbjct: 858 ERVTMNTPIQGTAADIIKYAMCTISRRLKEERLNSVMLLQVHDELLFETPADEQSRLTEL 917 Query: 648 CS 649 Sbjct: 918 VE 919 >gi|319941599|ref|ZP_08015924.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] gi|319804901|gb|EFW01747.1| DNA polymerase I [Sutterella wadsworthensis 3_1_45B] Length = 952 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 76/370 (20%), Positives = 141/370 (38%), Gaps = 57/370 (15%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K L D ER L + + G +D L+ + + + E ++L E+ Sbjct: 546 KLLRVYEDIERPLVGVLARMESAGITVDASLLAQESKELGVEVEQLVEEAHAAAGHPFNL 605 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 S L LF G+ +V + S +++LA + L ++ + KL Sbjct: 606 S-SPKQLAQILFAEQGLPVVKKTASGTPST-DEEVLSELALNYPLPKIILEHRRLTKLKS 663 Query: 293 ---NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + DGR+ T + TGR S QN+P + Sbjct: 664 TYLDKLPTLIDRDGRIHTTFG-QAVAVTGRLSSMDPNLQNIPTRT--------------- 707 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R+ A G ++ AD + +E R++A ++ + + AF+ GEDI+ Sbjct: 708 ---------PEGRRIRTAFTARRGWSVIDADYSQVELRIMAHLSQDAGLLSAFSRGEDIH 758 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQN 465 +T A+ F+TP+D+V+ +QR + KV+ L Y A+ + ++ Sbjct: 759 RSTAAEVFHTPLDQVTPDQRRMAKVINFGLIYGMSAFGLAQQMGLDRQVAAAYVDEYFHK 818 Query: 466 VKSTSTFEDWEQAES-----------HHLWMQD-QYPEFAVK---------DKLIGTACE 504 + + +A++ LW+ D P V+ + GTA + Sbjct: 819 FPGVKRYMEKTRAQAAEDGYVETAFGRRLWVPDITAPRPMVRAAAERAAINAPMQGTAAD 878 Query: 505 LVKKAWRAKH 514 ++K+A A Sbjct: 879 IIKRAMIAVD 888 Score = 43.6 bits (101), Expect = 0.099, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 7/57 (12%) Query: 603 QAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652 Q + DI+ M K ++L VHDE++ E P V L LM Sbjct: 873 QGTAADIIKRAMIAVDAWLRTEKLQAKLLLQVHDELIVEAPAEEVELVKQKLPELMA 929 >gi|332181803|gb|AEE17491.1| DNA polymerase I [Treponema brennaborense DSM 12168] Length = 926 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 84/485 (17%), Positives = 153/485 (31%), Gaps = 79/485 (16%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 HN F+ + ++ G+ P R T V A S A + L Sbjct: 415 PACTLAMHNGKFDYEVL-RSNGLAEPRCRIADTMVAAWLLDPDRS------AYSLEA-LA 466 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 + G I D P T A+ + Y D + T +L++ +P Sbjct: 467 ADKLGLETI-----PYTDVVPKGSTFADIPL--EQAVPYAAEDADLTWQLYRLFLPRLAA 519 Query: 184 ----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 E + + + G I+ ++ E + E +++ +I +L Sbjct: 520 AKLGDLFWNLEMPVLPILAEMELDGIHIEKSELISYGEELTAEIERIRREIYELVGHEF- 578 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + T L+ LF + ++ T +L IL+ + Sbjct: 579 NVASTKQLQDVLFEERKLPPGKKTKTGYSTDTGVLETLAALDPVPRKILDYRLKTKLFSS 638 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++TL V + R+ + G + TGR S QN+P Sbjct: 639 YVDTLPLMVDGNDRIHTSFIQTG-TATGRLSSREPNLQNIP------------------- 678 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R A G +L+ AD + IE +LA ++G+ AF+ G D++ Sbjct: 679 -----VRDEDGRRIRLAFTAEPGCQLISADYSQIELVILAHLSGDPNLCAAFSGGTDVHR 733 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T A F D V+ + R K + + Y A + ++ + + Sbjct: 734 ATAALIFGVQPDAVTPDMRRTAKTINFGVMYGMSAFRLAGALGIPRTQAAEFIEAYFKTY 793 Query: 467 KSTSTFEDW-----------EQAESHHLWMQDQ----------YPEFAVKDKLIGTACEL 505 F + E +++ AV + G+A ++ Sbjct: 794 AGVRNFMNEMVNAAQQSGFVETIFGRRRYIRAINSSSKIEKSGAERVAVNTPIQGSAADI 853 Query: 506 VKKAW 510 VKKA Sbjct: 854 VKKAM 858 >gi|305665261|ref|YP_003861548.1| DNA polymerase I [Maribacter sp. HTCC2170] gi|88710015|gb|EAR02247.1| DNA polymerase I [Maribacter sp. HTCC2170] Length = 944 Score = 248 bits (633), Expect = 2e-63, Method: Composition-based stats. Identities = 107/620 (17%), Positives = 203/620 (32%), Gaps = 107/620 (17%) Query: 1 MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + + D ET PL A + A++W+ E +++ Sbjct: 368 MKQNSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIPFPEDKNQAQEII 417 Query: 59 QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113 + LR E + + N ++ + K +I K S+LA Sbjct: 418 ETLRPFFESEMIEKIGQNLKYDIKVLHKY---NIQVKGKFFDSMLAHYLINPDMRHNMDV 474 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ + + LI + KG D + EY D + T +L Sbjct: 475 LSETYLNYTP--VSITELIGK--KGKNQLSMRDV-------PLEKQTEYAVEDADITYQL 523 Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + P + E L + + G +D + + L E + + K+L Sbjct: 524 AQHFRPELAEASTEELFNTIEIPLLHVLADMELEGINLDKEFLGSLSEDLNNDIKELQSK 583 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I K D + L LF + T + + ++ LAKD + R Sbjct: 584 IYKEADQEFNIA-SPKQLGEILFDKLKLVDKPKKTKTGQYSTAEDVLSYLAKDHEIIRNV 642 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L V GR+ + TGR S QN+P + Sbjct: 643 LEYRGLSKLKSTYVDALPLQVEERTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER- 700 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396 VR + L+ AD + IE R++A ++ ED Sbjct: 701 -----------------------GRQVRKAFVPRDEDYTLLAADYSQIELRIIAALSEED 737 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+AF NGEDI+ +T +K F+ P+D+V++EQR+ K + + Y G + Sbjct: 738 TMIEAFKNGEDIHASTASKVFDVPLDEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSR 797 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + ++ + + + + + + ++ Sbjct: 798 TEAKELIETYYKTYPKLRNYMSEQIDFARDNGYVQTVLGRRRYLKDINGSNAIVRGAAER 857 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 AV + G+A +++K A H+ + + + + V +V + + Sbjct: 858 NAVNAPIQGSAADIIKIAMINIHKKLSEGNY--------KTKMLLQVHDELVFDVHKAEL 909 Query: 552 RRHKRDVHIVLPSSRRLVYS 571 K + + ++ +L Sbjct: 910 EELKSLIQSEMENAYKLAVP 929 >gi|6730045|pdb|5KTQ|A Chain A, Large Fragment Of Taq Dna Polymerase Bound To Dctp gi|157831628|pdb|1KTQ|A Chain A, Dna Polymerase Length = 543 Score = 248 bits (633), Expect = 3e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 65 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 121 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 122 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 174 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 175 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 233 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 234 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 292 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 293 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 328 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 329 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 388 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 389 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 448 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 449 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 508 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 509 AVARLAKEVME 519 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 357 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 416 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 417 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 476 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 477 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 518 >gi|227499957|ref|ZP_03930050.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] gi|227218066|gb|EEI83339.1| possible DNA-directed DNA polymerase I [Anaerococcus tetradius ATCC 35098] Length = 880 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 117/579 (20%), Positives = 204/579 (35%), Gaps = 81/579 (13%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 D P + D A DE ++ + + + +L K LGID+ + Sbjct: 344 DSPAYILD--PDQAFIDSFKDVFEDEKILKNSFDIKEDIVLLNK-LGIDLNLP--FDDLM 398 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 L PS + L E + + KG S Y + + + Sbjct: 399 LMHYLIDPS---RSSYDLKTLSQAYLDYEVISEVDLLGKG-KKSLSYGELDYDKLSNYLA 454 Query: 159 FGEYCKRDVEA----TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D +A +K D E L + + G+ D ++L L+E I Sbjct: 455 SELNAIEDAKAKLVDMLNEYKMYDLYEDIEIKLSKVLANMEIVGFVTDRKVLLDLKEDIN 514 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS----- 266 ++ +KL +I +L + T L LF + ++ ++ T S+L Sbjct: 515 KDLEKLTSEIYELAGSEF-NINSTKQLGEVLFKDLDLPVIKKTKTGFSTDASVLEKLRDK 573 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 H I ++ K L +L S+ + L +A+ DGR+R T + A+ TGR S Sbjct: 574 HQIIPKIEKYRELFKLQSTY-----IEGLEKAIDDDGRIRSTFRQNIAA-TGRLSSQDPN 627 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QNLP + +R A GK L+ AD + IE Sbjct: 628 LQNLPIKT------------------------DEGRLIRKAFKAGQGKILIDADYSQIEL 663 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R+LA ++G++ I+AF NGEDI+ T +K F+TP+D+V+K QR+ K + + Y Sbjct: 664 RILASLSGDEHMIEAFRNGEDIHAKTASKVFHTPLDEVTKRQRSDAKAVNFGIIYGISDY 723 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481 G ++ + + + S + D + S Sbjct: 724 GLSQNLNIPRKEAKAYIDNYMASYPSIKAYMDSIVEKAKEDGFVETLFNRRRYVPEINSK 783 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + ++ A+ + GTA +++K A + + + D V+Q I Sbjct: 784 NFNVRSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLD----AKIVLQIHDEIILE 839 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 M + + L+ G+ Y Sbjct: 840 ASLEDKDSAMEILRNSMQEAANLKVPLIVDIDTGESMYE 878 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Query: 591 RTYGGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M KN K G D IVL +HDEI+ E S Sbjct: 788 RSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLDAKIVLQIHDEIILEASLEDKDS 847 Query: 644 VGTL 647 + Sbjct: 848 AMEI 851 >gi|73749074|ref|YP_308313.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] gi|73660790|emb|CAI83397.1| DNA-directed DNA polymerase I [Dehalococcoides sp. CBDB1] Length = 903 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 84/491 (17%), Positives = 159/491 (32%), Gaps = 61/491 (12%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L+ L ++ + AHN+ + L G +I + T + A G L Sbjct: 387 LIALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLG---EKNLGIKDL 441 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 F E + + + Q + K A K Sbjct: 442 VFEHFGV---EIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETKL 498 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + + E L + + G +D DL+ + E + + KL+E I + Sbjct: 499 IDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHSF-NIG 557 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF + ++ ++ T +L DLIL L+ Sbjct: 558 SPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYLD 617 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 TL V+ R T + TGR S QN+P Sbjct: 618 TLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP---------------------- 655 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 G +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T Sbjct: 656 --VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATA 713 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST 469 A+ N +V+KEQR + K + + Y + + + + ++ + + Sbjct: 714 ARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRV 773 Query: 470 STF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + + S + +++ A+ + GT+ +++K Sbjct: 774 AIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKL 833 Query: 509 AWRAKHQGVLQ 519 A + + + Sbjct: 834 AMVRLDEKLKE 844 Score = 44.0 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653 VQ S DI+ M + ++L VHDE++ E PD + L LM Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLESRLLLQVHDELIFEVPDAELKRMSAL--LMET 878 >gi|86135059|ref|ZP_01053641.1| DNA polymerase I [Polaribacter sp. MED152] gi|85821922|gb|EAQ43069.1| DNA polymerase I [Polaribacter sp. MED152] Length = 945 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 93/529 (17%), Positives = 176/529 (33%), Gaps = 89/529 (16%) Query: 33 CAYAWD-DEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 +Y V + E+ A+ + + E + V HN ++ + ++P Sbjct: 395 FSYEIGKGYYVSFPENQEETKAILEEFRPFFESEMIEKVGHNLKYDIKVLSNY---NMPV 451 Query: 91 KRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 K + +++A P + + H + E LI + K + Sbjct: 452 KGKLFDTMIAHYLINPDMRHNMDVLAETYLNYHPVSITE---LIGKKGKNQL-------- 500 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRG 198 + V + EY D + T +L + D E L + + G Sbjct: 501 -SMRVVPIKDQTEYAVEDADITYQLKQHFTKELDSGNVTELFNKVELPLVSVLTAMEIEG 559 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D + + +L + + +L+++I + + L + LF + Sbjct: 560 INVDTNFLKQLSTALTDDINRLEKEIYEQAGEEFNIA-SPKQLGIVLFENMKLVDKPKKT 618 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFY 312 T + ++ LAK+ + R KL + L ++ GR+ Sbjct: 619 KTGQYKTGEDILSFLAKEHKIIRDIQEYRQYKKLQSTYVDALPNEINKKTGRIHTQY-MQ 677 Query: 313 GASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA- 370 + TGR S QN+P R ER E VR + Sbjct: 678 AVAATGRLSSNNPNLQNIPIRTERGRE-------------------------VRKAFVPK 712 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 L+ AD + IE R++A ++ E+ I AF NGEDI+ +T AK F I+ V++EQR+ Sbjct: 713 DENYVLLAADYSQIELRIIAALSEEETMINAFKNGEDIHASTAAKVFGVDINDVTREQRS 772 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE------------- 473 K + + Y G + + + + + Sbjct: 773 NAKTVNFGIVYGVSAFGLSNQTDLSRGEAKELIDTYYETYPKLKAYMSAQVDFAREHGYV 832 Query: 474 --------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + S + ++ AV + G+A +++K A H Sbjct: 833 ETVLNRRRYLKDINSRNAMVRSGAERNAVNAPIQGSAADIIKLAMINIH 881 >gi|5822373|pdb|1QTM|A Chain A, Ddttp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 62 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 118 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 119 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 171 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 172 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 230 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 231 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 289 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 290 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 325 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 326 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 385 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 386 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 445 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 446 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 505 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 506 AVARLAKEVME 516 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 354 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 413 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 473 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 474 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 515 >gi|5822347|pdb|1QSS|A Chain A, Ddgtp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|5822350|pdb|1QSY|A Chain A, Ddatp-Trapped Closed Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 539 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 62 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 118 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 119 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 171 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 172 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 230 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 231 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 289 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 290 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 325 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 326 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 385 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 386 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 445 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 446 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 505 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 506 AVARLAKEVME 516 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 354 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 413 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 473 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 474 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 515 >gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 61 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 117 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 118 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 170 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 171 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 229 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 230 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 288 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 289 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 324 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 325 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 384 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 385 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 444 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 445 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 504 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 505 AVARLAKEVME 515 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 353 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 412 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 413 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 472 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 473 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 514 >gi|310658711|ref|YP_003936432.1| DNA polymerase I [Clostridium sticklandii DSM 519] gi|308825489|emb|CBH21527.1| DNA polymerase I [Clostridium sticklandii] Length = 888 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 87/514 (16%), Positives = 164/514 (31%), Gaps = 82/514 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLPSSLK 110 L + + +N + ++ K L DI ++ S + +LK Sbjct: 367 LKDVFENPEIKKYGYNLKNDCLILKPYEINLTGLYFDIAIAEYLIDSTSSNYEIKDIALK 426 Query: 111 -NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 N L+ E L K + K I K + Sbjct: 427 YNLGDVLSLEELLGK-GKSKKDFKDLSDAQISGYACSVLDIVDK---------GKEALIT 476 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T E + + E L + + G D +++ +L++ E K L+ I + Sbjct: 477 TIENYNMHNLFYEVEMPLVEILADMEYIGISADKEVLNELKQKFDIEIKTLEASIYEYAG 536 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF G+ + ++ T +L + D I + Sbjct: 537 ENF-NINSPKQLGHILFDKLGLPAIKKTKTGYSTNAEVLEALSDKHPIIDKITLYRQYTK 595 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L ++ GR+ + + TGR S QN+P Sbjct: 596 LQSTYVDGLLNIINPKTGRIHSSFN-QTITTTGRISSTEPNMQNIP-------------- 640 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A LV AD + IE R+LA IA ++ I AF+ G Sbjct: 641 ----------VRLEIGRELRKVFVAPEDMYLVDADYSQIELRILAHIANDEGLIDAFSKG 690 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 +DI+ T ++ FN P+D+V+KE R+ K + + Y G + + Sbjct: 691 DDIHTITASEVFNVPLDEVTKELRSAAKAVNFGIVYGISDFGLSNNLGISKQVAKEYIDN 750 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIG 500 + + + ++ + + Y A+ + G Sbjct: 751 YFARYPYVKKYMEDIVEKAKNDGYVETYIGRRRYIPELGSNNFIMKNLGKRLAMNTPIQG 810 Query: 501 TACELVKKAWRA----------KHQGVLQLWKDL 524 +A +++K A K + +LQ+ +L Sbjct: 811 SAADVIKIAMVKVYARLKSEGLKSKLILQVHDEL 844 >gi|6730021|pdb|2KTQ|A Chain A, Open Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Length = 538 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 60 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 116 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 117 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 169 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 170 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 228 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 229 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 287 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 288 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 323 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 324 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 383 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 384 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 443 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 444 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 503 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 504 AVARLAKEVME 514 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 352 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 411 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 412 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 471 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 472 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 513 >gi|328955794|ref|YP_004373127.1| DNA polymerase I [Coriobacterium glomerans PW2] gi|328456118|gb|AEB07312.1| DNA polymerase I [Coriobacterium glomerans PW2] Length = 942 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 140/400 (35%), Gaps = 68/400 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G +D + L E + + +L I L + L Sbjct: 540 DIETPLVPVLVAMERTGMLVDPGCLKDLSEGLESQIDELAVRIRALAGDSDFNISSPMQL 599 Query: 242 RMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILK-----LNTL 295 LF + G+ + + + + +LA+D L RL K L+TL Sbjct: 600 SHILFDVMGLPTKGLKKTHRGYYSTNARVLDELAQDNELVRLILEYREKTKIKSTYLDTL 659 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 DGR+ T + TGR S QN+P + Sbjct: 660 GPLRRQDGRVHTTYN-QTITATGRLSSSNPNLQNIPTRS--------------------- 697 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 V++ A G + D + IE R+LA ++G++ I+AF GED + T A+ Sbjct: 698 ---ELGHTVKTAFSAGEGALFLAVDYSQIELRLLAHLSGDEHLIRAFREGEDFHAETAAR 754 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F P+D+V+ R+ K + + Y G ++ S + ++ + Sbjct: 755 VFGVPVDEVTPRLRSRAKAVNFGIVYGQQAFGLSQTLDIPVSEAQEMIDRYFEAYPGVRA 814 Query: 472 FEDWEQAES---------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 F D AE+ + + A+ + G+A +++K A Sbjct: 815 FLDRTVAEAAERGYAETMFGRRRPIPELRMKNATQRSFGERTAMNHPMQGSAADIIKIAM 874 Query: 511 RAKHQG----------VLQLWKDLTEGFACVVQEGGSISA 540 R + +LQ+ +L F C + E +SA Sbjct: 875 RRVAERLHGGDLHAKMILQVHDELD--FECPIAEVADVSA 912 >gi|6730032|pdb|3KTQ|A Chain A, Crystal Structure Of An Active Ternary Complex Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus gi|157831580|pdb|1JXE|A Chain A, Stoffel Fragment Of Taq Dna Polymerase I gi|295789478|pdb|3LWL|A Chain A, Structure Of Klenow Fragment Of Taq Polymerase In Complex Wi Abasic Site gi|295789481|pdb|3LWM|A Chain A, Structure Of The Large Fragment Of Thermus Aquaticus Dna Pol In Complex With A Blunt-Ended Dna And Ddatp gi|300193253|pdb|3M8R|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Ethylated Dttp gi|300193256|pdb|3M8S|A Chain A, Crystal Structure Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus In A Closed Ternary Complex With Trapped 4'- Methylated Dttp gi|315113724|pdb|3OJS|A Chain A, Snapshots Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidines gi|315113727|pdb|3OJU|A Chain A, Snapshot Of The Large Fragment Of Dna Polymerase I From Thermus Aquaticus Processing C5 Modified Thymidies Length = 540 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 62 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 118 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 119 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 171 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 172 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 230 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 231 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 289 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 290 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 325 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 326 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 385 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 386 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 445 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 446 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 505 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 506 AVARLAKEVME 516 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 354 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 413 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 414 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 473 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 474 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 515 >gi|313115485|ref|ZP_07800950.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] gi|310622195|gb|EFQ05685.1| DNA-directed DNA polymerase [Faecalibacterium cf. prausnitzii KLE1255] Length = 864 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 104/543 (19%), Positives = 184/543 (33%), Gaps = 90/543 (16%) Query: 43 KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + D T +DL++ L + V N+ L+ K + + W + V Sbjct: 353 AVQDCTVYPLEDADLVRLLDNADVTLEVFNAA---PLYAKA----MAAGGWGSSIVWD-- 403 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L + L +A + ++++ A F T A++ A +L + Sbjct: 404 GKLAAYLLDASASKY---QISELTASYRAAAAF------------TCADYPDAGRLADLF 448 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 CK E T L ++ E L + + G +D D + + + E +++ Sbjct: 449 CKMKAEITACGEDSLY--NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLRTELEQVLT 506 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I T + L LF G+ ++ T L L +D++ Sbjct: 507 RIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLRDYPLVEDILQ 566 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 R A + L + + DGR+ T A RTGR S QN+P + Sbjct: 567 YR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRT----- 619 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R+ IA G LV AD + IE R+LA I G++ Sbjct: 620 -------------------ELGSQLRAYFIAKPGCVLVDADYSQIELRILAHITGDEHMQ 660 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF NGEDI+ +T AK + P ++V+ R+ K + + Y G AK Sbjct: 661 QAFLNGEDIHRSTAAKIYGIPQEEVTSRLRSSAKAINFGIMYGKGAYSLAKDIGVSVKEA 720 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 L+ + S + D A++ + ++ A Sbjct: 721 DAFLKNYLAAFPKVSGYMDKTIADAKACGYVSTLFGRRRALPELASSNFNVRSSGERMAR 780 Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 + GTA +++K A + + + +L + +L E + R Sbjct: 781 NTPIQGTAADVIKLAMVRVWKRLRNEKMESRLILTVHDELIVEAPQAEAEKAAQILREEM 840 Query: 545 NVP 547 Sbjct: 841 EGC 843 >gi|46203235|ref|ZP_00051830.2| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Magnetospirillum magnetotacticum MS-1] Length = 485 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 74/393 (18%), Positives = 139/393 (35%), Gaps = 69/393 (17%) Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T L++ + P ER L + + G RID +++ +L Sbjct: 50 YAAEDADVTLRLWRMMKPRLVAERRVTVYETLERPLVPVLARMERAGIRIDRNMLSRLSG 109 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +Q +L+E+I + + + LF G+ + + + + Sbjct: 110 DFSQILARLEEEIQEDAGEKFQ-VSSPKQIGDVLFGKLGLPGAKKTPSG-QWATPATLLE 167 Query: 272 QLAKD-LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCV 324 +LA+ L + + + KL ++L E R+ + A+ TGR S Sbjct: 168 ELAQAGHELPKKILNWRQLAKLKSTYTDSLQEHADRETNRVHTSFSL-AATTTGRLSSSE 226 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P + +R +A GKKL+ AD + I Sbjct: 227 PNLQNIPIRT------------------------EEGRRIRRAFVAPEGKKLISADYSQI 262 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442 E R+LA IA +AF G DI+ T + F P+D+++ + R K + + Y Sbjct: 263 ELRLLAHIADIPQLREAFEQGLDIHAATASAMFGVPLDQMTGDLRRRAKTINFGIIYGIS 322 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479 G A ++Q+ + + D + Q Sbjct: 323 AFGLADRLGIGREEASAFIKQYFERFPGIRDYIDTTKKSCREKGYVTTLFGRVCHYPQIR 382 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 S++ + A+ + GTA +++++A Sbjct: 383 SNNPSERASVERQAINAPIQGTAADIIRRAMTR 415 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 26/118 (22%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 R Y ++ + + R+ +Q + DI+ M Sbjct: 373 GRVCHYPQIRSNNPSERASV---ERQAINAP------IQGTAADIIRRAMTRMEAALEAK 423 Query: 621 --GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPL--------KAEG 667 ++L VHDE+V E PD ++ + +M + P A L L +A G Sbjct: 424 RLTARMLLQVHDELVFEVPDDEVEATIPVIAEVMEQAP--APALTLSVPLVVEARAAG 479 >gi|150024396|ref|YP_001295222.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] gi|149770937|emb|CAL42404.1| DNA polymerase I [Flavobacterium psychrophilum JIP02/86] Length = 948 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 88/512 (17%), Positives = 168/512 (32%), Gaps = 82/512 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + E++ + N ++ + G+ I K + T + L Sbjct: 421 DKFKPFFESESIEKIGQNIKYDLKILSHY-GVQIKGKLF-DTMIAHYLINPDMRHNMDVL 478 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + ++ K E LI + KG D + + EY D + T +L Sbjct: 479 SETYLKYSPKSIE--DLIGK--KGKNQKSMRDVSL-------EEIKEYAAEDADITYQLK 527 Query: 175 KRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + P+ D E L + + G +D+ + + +A E L++ I Sbjct: 528 QNFSPILDKAETKKLFEEIEIPLIPVLAAMELEGINLDVPFLKSMSAEMALESNALEQKI 587 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLA 283 + + L LF I + T + ++ LA D + + Sbjct: 588 YETAGEKFNLA-SPKQLGDVLFDKMKIGGAKQKKTKTGQYATGEEILSYLANDNPIVKDI 646 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++KL + L V GR+ + TGR S QN+P + Sbjct: 647 LEWRQMVKLQSTYIDALPNQVDKKTGRVHTDY-MQTVAATGRLSSNNPNLQNIPVRTER- 704 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396 +R I L+ AD + IE R++A ++GE+ Sbjct: 705 -----------------------GRLIRKAFIPRNENYTLISADYSQIELRIIAALSGEE 741 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I AF N +DI+ +T AK FN ++ V+KEQR+ K + + Y G + Sbjct: 742 NMIAAFQNNQDIHKSTAAKVFNVALEDVTKEQRSNAKTVNFGIIYGVSAFGLSNQTSLSR 801 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + + ++ + + ++ ++ Sbjct: 802 KESAELIDAYYATYPKLKSYMSNQVDFARENGYVQTVLGRRRYLKDINSANMMVKSGAER 861 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 AV + G+A +++K A H+ + Q Sbjct: 862 NAVNAPIQGSAADIIKIAMINIHKKLTQENWQ 893 >gi|260753224|ref|YP_003226117.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552587|gb|ACV75533.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 921 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 96/570 (16%), Positives = 189/570 (33%), Gaps = 89/570 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L D +++ + N ++ I+ + GI + G + Sbjct: 396 KKLKPVLEDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELS 454 Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEA 169 L F + GK+ I + Y A+ + W L D Sbjct: 455 LLYFDHQPISFKSVCGTGKSAITFNHVPIPAATRYAAEDADITFRLWALLKPRLSSDGAT 514 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +++ + +R L + + G +D + L A + +L+E+I L Sbjct: 515 --RIYE------EVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYVLAG 566 Query: 230 --GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNR 281 +I S +Q L LF G+ S+ + + + + +LA + IL Sbjct: 567 CRFLISSPKQ---LGEVLFGTMGLAGGKKSKSG-QYSTNVTELERLAAEGEVIASKILEW 622 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S + L V+ GR+ + GA +TGR S QN+P + Sbjct: 623 RQLSKLKSTYSDALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIPIRT------ 675 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ IA G L+ AD + IE R+ A +A E ++ Sbjct: 676 ------------------EIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQ 717 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF EDI+ T + F V +E RA K + A+ Y G A + Sbjct: 718 AFQEKEDIHALTAKQLFGH----VDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQ 773 Query: 457 LDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVK 495 + ++ + + + D +S + + A+ Sbjct: 774 EMIDRYFERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAIN 833 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + G + +++K+A +++ L + V+ + + VP + + K Sbjct: 834 APIQGMSADIIKRAM-------VRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAK 886 Query: 556 RDV-HIVLPSSRRLVYSDVKGDCSYLNTAT 584 + +++ ++ +V V + + Sbjct: 887 PVIRQVMMEAALPIVQLSVDLEVEIGTGTS 916 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 15/117 (12%) Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDC-SYLNTAT-------SQLMRERTYGGKLTEN 600 ++ R +R I R L + + G + T ++ + + Sbjct: 775 MIDRYFERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINA 834 Query: 601 IVQAISRDILCEGMKNAT----KNGYDIV---LTVHDEIVSETPDTPYFSVGTLCSL 650 +Q +S DI+ M K G V L VHDE++ E P+ + Sbjct: 835 PIQGMSADIIKRAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQ 891 >gi|254423394|ref|ZP_05037112.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] gi|196190883|gb|EDX85847.1| DNA polymerase I superfamily [Synechococcus sp. PCC 7335] Length = 920 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 113/684 (16%), Positives = 213/684 (31%), Gaps = 133/684 (19%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLL 58 D ET S L +G + E AY + + + + S L Sbjct: 335 DTETNSIDPLEADLVGIGCC-WGEGPTAL--AY------IPVGHTAGEQLSMETVLSALK 385 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART-NGLPSSLKNACLALN 117 L D+ V N+ ++R++ ++ + + +LA +S + LAL Sbjct: 386 PILEDQQYPKVFQNAKYDRLVLRRA---GVSLTGVVFDPMLASYVLNPENSHNLSDLALR 442 Query: 118 FSE-----HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + E + + +GK + + +I C H K D++ + Sbjct: 443 YLELTTVSYTDLVPKGKTI----GEVAIAEVAQYCGSDVHTTY--RLVPLLKADLQEVPD 496 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L ++ E + + + G RID + + + + + +++ Sbjct: 497 LATL---YTEVELPVEPVLAKMEATGIRIDKAYLNQFSKQLESDLAGIEKAAYDAAGEEF 553 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L F G+D + + + +L D + + KL Sbjct: 554 -NLGSPKQLSELFFEKLGLDKRKSRKNKTGYSTDAATLEKLQGDHPVVDSVVEYRTLSKL 612 Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + GR+ + TGR S QN+P + Sbjct: 613 KSTYVDALPALIRPNTGRVHTDFN-QAITTTGRLSSSNPNLQNIPTRT------------ 659 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 S +R + G +LV AD + IE R+LA ++ E IK + E Sbjct: 660 ------------AFSRQIRQAFLPKEGWQLVAADYSQIELRILAHLSEEPILIKTYREDE 707 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 D++ T F+ D+++ E+R + KV+ + Y GA F LD + F Sbjct: 708 DVHRLTATLLFDKDKDEITVEERRMAKVINFGVIYGMGAARFAREMDIHRLDAKTFIDRF 767 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 + + + MQ + + + G Sbjct: 768 N-----QRYPNVFEYLQQMQREAIAYGYVKTIAGR------------------------- 797 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 RR+ L + + + + N + Sbjct: 798 -------------------------RRYFNFTTRSLQALKGTDPTKIDLSSLRTNGYDAG 832 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTPYF 642 L+R +Q S DI+ M + GY ++L VHDE++ E P + Sbjct: 833 LLRAAANAP------IQGSSADIIKVAMIRLHELLKGYQANMLLQVHDELIFEVPPDEWE 886 Query: 643 SVG-TLCSLMTKNPSWAKGLPLKA 665 + + M S A L ++A Sbjct: 887 ELQPKIEQTMEDAVSLAVPLKVEA 910 >gi|147669839|ref|YP_001214657.1| DNA polymerase I [Dehalococcoides sp. BAV1] gi|146270787|gb|ABQ17779.1| DNA polymerase I [Dehalococcoides sp. BAV1] Length = 903 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 83/491 (16%), Positives = 158/491 (32%), Gaps = 61/491 (12%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L+ L ++ + AHN+ + L G +I + T + A G L Sbjct: 387 LIALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLG---EKNLGIKDL 441 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 F E + + + Q + K A Sbjct: 442 VFEHFGV---EIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAETNL 498 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + + E L + + G +D DL+ + E + + KL+E I + Sbjct: 499 IDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHSF-NIG 557 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF + ++ ++ T +L DLIL L+ Sbjct: 558 SPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYLD 617 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 TL V+ R T + TGR S QN+P Sbjct: 618 TLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP---------------------- 655 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 G +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T Sbjct: 656 --VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATA 713 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST 469 A+ N +V+KEQR + K + + Y + + + + ++ + + Sbjct: 714 ARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRV 773 Query: 470 STF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + + S + +++ A+ + GT+ +++K Sbjct: 774 AIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKL 833 Query: 509 AWRAKHQGVLQ 519 A + + + Sbjct: 834 AMVRLDEKLKE 844 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653 VQ S DI+ M + ++L VHDE++ E PD + L LM Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAELKRMSAL--LMET 878 >gi|78188162|ref|YP_378500.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] gi|78170361|gb|ABB27457.1| DNA polymerase A [Chlorobium chlorochromatii CaD3] Length = 924 Score = 247 bits (631), Expect = 4e-63, Method: Composition-based stats. Identities = 106/554 (19%), Positives = 187/554 (33%), Gaps = 89/554 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW----DRTEQSAMPSDLL 58 + +D ET S + + AE A I+LCA A D E+ + L Sbjct: 352 HIAVDTETTS-LDVFE------AELAGISLCAEA---GKAFFIATTPDALERKEVVKQLK 401 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L + + N ++ ++ KK GI++ + T + + +AL + Sbjct: 402 PLLENPAITKSGQNLKYDMLVLKKY-GIELAPISF-DTMLASYVLNPDEHHNLDDMALRY 459 Query: 119 -SEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 TK +E GK F Y C A+ A+QL E + ++A +L Sbjct: 460 LGRTTTKYDELTGTGKQRRHIFEVEKEALTNYACQDAD--VAFQL-EEVLQAQLQAEPQL 516 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + T+ G ID + + ++ E E + L ++I Sbjct: 517 LALC---TTMEFPLVRVLATMEYAGIAIDTEHLARVAETTELELQSLTDNIYAAAGSSF- 572 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + L LF + ++ + +LA + S + KL Sbjct: 573 NIDSPKQLSHVLFTDLSLPTGKSTKTGF--STDVGVLEELAATYPIASDLLSYRTLQKLK 630 Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L + ++ GR+ + + + TGR S QN+P + Sbjct: 631 GTYIEALPKIINPRTGRIHTSFNQH-ITATGRLSSSNPNLQNIPVRT------------- 676 Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I S L+ AD + IE R+ A ++G++ I AF NGE Sbjct: 677 -----------ALGKEIRRAFIPSTPEHWLLSADYSQIELRIAAELSGDERLIAAFRNGE 725 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T F T +++S + R K + + Y G AK + ++ + Sbjct: 726 DIHTATAQVIFGT--EEISSDMRRKAKEVNFGVLYGIQPFGLAKRLNIPQKEAKVIIETY 783 Query: 463 SQNVKSTSTFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGT 501 E S + +Q A+ + GT Sbjct: 784 KAKYPQLFNVLRHIIEEGKEKGYVTTLLGRRRYIADLNSRNGTVQKAAERAAMNTPIQGT 843 Query: 502 ACELVKKAWRAKHQ 515 A +++K A +Q Sbjct: 844 AADIIKCAMNLCYQ 857 >gi|270308554|ref|YP_003330612.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] gi|270154446|gb|ACZ62284.1| DNA-directed DNA polymerase I [Dehalococcoides sp. VS] Length = 903 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 93/496 (18%), Positives = 173/496 (34%), Gaps = 67/496 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L L D+ + AHN+ + L G ++ + T + A G A Sbjct: 385 SGLAALLGDKKMSKTAHNAKYLMNLLLSA-GQEVKGLDF-DTMIAAHLLG---EKNLAIK 439 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW--QLFGEYCKRDVEATRE 172 L F ++ + + ++ R K +I + A + +L G + + E Sbjct: 440 DLVFEHFGIEIADIENILTRNGKKTIFNEVQLSEAAQLAADYTFRLKGIFAAQLAET--- 496 Query: 173 LFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 RL+ L + E L + + G +D DL+ + E ++ KL+EDI Sbjct: 497 ---RLMDLFARVEMPLLPILLGMERIGIMLDTDLLKAMAEKTGRQIFKLEEDIYAQAGHS 553 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF + ++ ++ T +L DLIL Sbjct: 554 F-NIGSPQQLGRILFDELKLPVIKKTKTGYSTGAEVLEELQGKHRIVDLILEYRMLVKLK 612 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L+TL V+ R T + TGR S QN+P Sbjct: 613 STYLDTLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP----------------- 655 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G +R IA G L+ D + I+ RVLA ++ + I+AF + +DI Sbjct: 656 -------VRGEMGREIRRAFIAPPGTVLLAGDYSQIDLRVLAHLSQDPALIEAFQSDQDI 708 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464 + T A+ N KV+KEQR + K + + Y + + + ++ + + Sbjct: 709 HTATAARLLNVSPSKVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLEEADKFIKAYFE 768 Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + S + +++ A+ + GT+ Sbjct: 769 KYPRVAVYFAEIKQQARTQGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSA 828 Query: 504 ELVKKAWRAKHQGVLQ 519 +++K A + + + Sbjct: 829 DIIKLAMVRLDEKIKE 844 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 VQ S DI+ M + ++L VHDE++ E P + L M+ Sbjct: 823 VQGTSADIIKLAMVRLDEKIKEEKLKSRLLLQVHDELIFEVPTAELGRMSDLLIETMSGA 882 Query: 655 PSWAKGLPLKAE 666 A +PLK E Sbjct: 883 V--AFEIPLKVE 892 >gi|323140021|ref|ZP_08075033.1| DNA polymerase I [Methylocystis sp. ATCC 49242] gi|322394722|gb|EFX97311.1| DNA polymerase I [Methylocystis sp. ATCC 49242] Length = 833 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 355 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 411 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 412 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 464 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 465 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 523 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 524 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 582 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 583 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 618 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 619 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 678 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 679 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 738 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 739 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 798 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 799 AVARLAKEVME 809 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 647 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 706 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 707 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 766 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 767 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 808 >gi|289433051|ref|YP_003462924.1| DNA polymerase I [Dehalococcoides sp. GT] gi|288946771|gb|ADC74468.1| DNA polymerase I [Dehalococcoides sp. GT] Length = 903 Score = 247 bits (630), Expect = 5e-63, Method: Composition-based stats. Identities = 83/491 (16%), Positives = 158/491 (32%), Gaps = 61/491 (12%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L+ L ++ + AHN+ + L G +I + T + A G L Sbjct: 387 LIALLTNKNITKTAHNAKYLMNLLASA-GQEIQGLDF-DTMLSAHLLG---EKNLGIKDL 441 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 F E + + + Q + K A Sbjct: 442 VFEHFGV---EIADVENILTQNGKKKSFSASELSEAAQLVADYTFRLKGLFAAQLAEINL 498 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + + E L + + G +D DL+ + E + + KL+E I + Sbjct: 499 IDLFVNVEMPLVPILLGMERSGIMLDTDLLKGMAEKVGGQIFKLEEAIYAQAGHSF-NIG 557 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF + ++ ++ T +L DLIL L+ Sbjct: 558 SPQQLGRILFDELKLPVIKKTKTGYSTGAEVLDELKGEHRIVDLILEYRMLVKLKSTYLD 617 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 TL V+ R T + TGR S QN+P Sbjct: 618 TLPRMVNPHTRRLHTSFNQTRTATGRLSSSEPNLQNIP---------------------- 655 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 G +R IA G ++ D + I+ RVLA ++G+ I+AF +DI+ T Sbjct: 656 --VRGEMGREIRRAFIAPKGTVMLAGDYSQIDLRVLAHLSGDPALIEAFLKDQDIHTATA 713 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKST 469 A+ N +V+KEQR + K + + Y + + + + ++ + + Sbjct: 714 ARLLNILPSEVTKEQRRLAKTVNFGVIYGMSSYGLEQATELSLAEADKFIKAYFEKYPRV 773 Query: 470 STF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + + S + +++ A+ + GT+ +++K Sbjct: 774 AIYFAEIKHQARTNGYVETLLGRRRYIPEINSPNRILRESAERMAINMPVQGTSADIIKL 833 Query: 509 AWRAKHQGVLQ 519 A + + + Sbjct: 834 AMVRLDEKLKE 844 Score = 44.0 bits (102), Expect = 0.097, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653 VQ S DI+ M + ++L VHDE++ E PD + + L LM Sbjct: 823 VQGTSADIIKLAMVRLDEKLKEEKLKSRLLLQVHDELIFEVPDAEFKRMSAL--LMET 878 >gi|332044967|gb|EGI81160.1| DNA polymerase I [Lacinutrix algicola 5H-3-7-4] Length = 953 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 100/592 (16%), Positives = 186/592 (31%), Gaps = 107/592 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR---- 62 D ET PL A + A++W+ E +++ LR Sbjct: 385 DTETTGLNPLT----------AELVGIAFSWETGKGFYLPFPEDKQEAQAIIEALRCFFE 434 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121 E + + N ++ + K ++ K + ++LA LA + + Sbjct: 435 AENIQKIGQNLKYDIKVLAKY---NVEVKGPLFDTMLAHYLINPDMRHNMDVLAETYLNY 491 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 LI + K + + EY D + T +L + Sbjct: 492 TP--VSITELIGKKGKNQLSMRDVPLDKQT---------EYAVEDADITLQLKEHFEKEL 540 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + + G +D D + L + ++ + L I + Sbjct: 541 GEANTQKLFDDIEVPLLRVLAAMELEGINLDKDFLQSLSNDLNRDIEALVTKIYDVAGEE 600 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L + LF + T + ++ LAKD + R + K Sbjct: 601 FNIA-SPKQLGIILFEKLKLVDKPKKTKTGQYKTGEDILSVLAKDHEIIRNILEYRGLAK 659 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L V GR+ + TGR S QN+P + Sbjct: 660 LKSTYVDALPLQVEESTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER--------- 709 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR I + L+ AD + IE R++A ++ E+ I+AF N Sbjct: 710 ---------------GRQVRKAFIPRNDDYTLLAADYSQIELRIIAALSKEETMIEAFKN 754 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 GEDI+ +T +K F PI++V++ QR+ K + + Y G + + Sbjct: 755 GEDIHASTASKVFGVPIEEVTRAQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELID 814 Query: 461 QFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLI 499 + + + + S + ++ AV + Sbjct: 815 TYYETYPKLKKYMSEQVHFARDNGYVKTILDRRRYLKDINSRNAVVRGAAERNAVNAPIQ 874 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 G+A +++K A K + +LQ+ +L E + + Sbjct: 875 GSAADIIKIAMINIYNKLEAGNYKTKMLLQVHDELVFDVYKPELEKMTTLIK 926 >gi|118828|sp|P19821|DPO1_THEAQ RecName: Full=DNA polymerase I, thermostable; AltName: Full=Taq polymerase 1 gi|3891938|pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab gi|7246019|pdb|1CMW|A Chain A, Crystal Structure Of Taq Dna-Polymerase Shows A New Orientation For The Structure-Specific Nuclease Domain gi|157880198|pdb|1TAU|A Chain A, Taq Polymerase (E.C.2.7.7.7)DNAB-Octylglucoside Complex gi|155129|gb|AAA27507.1| DNA polymerase [Thermus aquaticus] Length = 832 Score = 247 bits (630), Expect = 6e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 354 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 410 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 411 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 463 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 464 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 522 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 523 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 581 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 582 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 617 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 618 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 677 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 678 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 737 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 738 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 797 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 798 AVARLAKEVME 808 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 646 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 705 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 765 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 766 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 807 >gi|332169409|gb|AEE18664.1| DNA polymerase I [Krokinobacter diaphorus 4H-3-7-5] Length = 949 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 99/611 (16%), Positives = 196/611 (32%), Gaps = 104/611 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQYLR 62 D ET PL A + A++W+ E + +L + Sbjct: 382 DTETTGLDPLV----------AELVGIAFSWEAGKGYYIPFPESKEEAQALIEELRPFFE 431 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121 + + + N ++ + K ++ K + ++LA LA + + Sbjct: 432 NTAIEKIGQNLKYDIKVLAKY---NVKVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNY 488 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 LI + KG D + + + Y D + T +L + Sbjct: 489 TP--VSITELIGK--KGKNQKSMRDVSVDDQTE-------YAVEDADITLQLKQHFEKEL 537 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 D E L + + G +D+ + L + + ++L +I Sbjct: 538 DEAGTRKLFDDIEIPLLRVLAAMEVEGINLDVSFLQSLSGDLNADIERLTSEIFAEAGEE 597 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF + T + + ++ LAKD + + + K Sbjct: 598 F-NIGSPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYRGLSK 656 Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + L E V+ DGR+ + TGR S QN+P + Sbjct: 657 LKSTYVDALPEQVAQDGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER---------- 705 Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 VR + L+ AD + IE R++A ++ E+ I+AF +G Sbjct: 706 --------------GRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFTDG 751 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 EDI+ +T AK FN P+++V++EQR+ K + + Y G + + Sbjct: 752 EDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELIDN 811 Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500 + ++ + + ++ AV + G Sbjct: 812 YYKSYPKLRNYMSELVEFARENGYVKTVLDRRRYLNGINSSNGVVRGAAERNAVNAPIQG 871 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 +A +++K A + + E + + V +VP + K + Sbjct: 872 SAADIIKIAMINIFEKL--------ENSDYKTKMLLQVHDELVFDVPNDELDAIKELIKT 923 Query: 561 VLPSSRRLVYS 571 + S+ ++ Sbjct: 924 EMESAFKMAVP 934 Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 17/103 (16%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 R V VL R L G S R +Q + DI+ Sbjct: 829 FARENGYVKTVLDRRRYLN-----GINSSNGVVRGAAERNAVNAP------IQGSAADII 877 Query: 611 CEGMKNA----TKNGYDI--VLTVHDEIVSETPDTPYFSVGTL 647 M N + Y +L VHDE+V + P+ ++ L Sbjct: 878 KIAMINIFEKLENSDYKTKMLLQVHDELVFDVPNDELDAIKEL 920 >gi|319802967|dbj|BAJ61823.1| Taq polymerase 1 [eukaryotic synthetic construct] gi|319802969|dbj|BAJ61824.1| Taq polymerase 1 [eukaryotic synthetic construct] Length = 829 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 351 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 407 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 408 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 460 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 461 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 519 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 520 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 578 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 579 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 614 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 615 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 674 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 675 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 734 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 735 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 794 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 795 AVARLAKEVME 805 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 643 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 702 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 703 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 762 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 763 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 804 >gi|507891|dbj|BAA06775.1| DNA Polymerase [Thermus aquaticus] Length = 832 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 354 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 410 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 411 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 463 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 464 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 522 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 523 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 581 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 582 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 617 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 618 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 677 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 678 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 737 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 738 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 797 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 798 AVARLAKEVME 808 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 646 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 705 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 765 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 766 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 807 >gi|159028763|emb|CAO89934.1| polA [Microcystis aeruginosa PCC 7806] Length = 956 Score = 246 bits (629), Expect = 6e-63, Method: Composition-based stats. Identities = 108/631 (17%), Positives = 203/631 (32%), Gaps = 126/631 (19%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + L L + V N+ F+ +F I K + +++A Sbjct: 409 DNLNLEIVLEKLRPILASDNYPKVFQNAKFDIDVFYHQ---GITVKGLVFDTMVASYVLH 465 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 P L N + + +G ++ G YC Sbjct: 466 PE------LTHNLEDLCDRYLDGITSLSYKSLGIPGGKTIADLDITTT------ANYCGL 513 Query: 166 DVEATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D AT L ++L IP S+ E L ++ + + G +I+++ + L + + Sbjct: 514 DAYATYLLREKLQAELTKIPSLYQLFSEVESPLVMVLWQMENYGIKININYLKNLSQQLE 573 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 ++ +++ + + L LF ++ + S + +L Sbjct: 574 RDLADIEKKAYESIGETF-NLGSPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQ 632 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 D L + KL + L + R+ + TGR S Q Sbjct: 633 GDHPLIDYILEHRTLSKLKSTYVDALPKLAEPKTARVHTDFN-QTITSTGRLSSSNPNLQ 691 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + S +R I +G LV AD + IE R+ Sbjct: 692 NIPVRS------------------------EFSRRIRQAFIPEDGYLLVSADYSQIELRI 727 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA ++ E ++A+ + +D++ T F+ +++ E+R++GK + + Y GA+ Sbjct: 728 LAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--GEITPEERSLGKTINFGVIYGMGAQ-- 783 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 A L ++Q + + +K ++ + Sbjct: 784 -KFARESKLTVEQGRKFI-----------------------------EKYHQRYAQVFQY 813 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 +K Q + Q R D + L R L Sbjct: 814 LENSKKQAIAQ----------------------GYVETILGRRRYFNFDNPL-LKRLRGL 850 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GY--DI 624 D+ D LN +QL+R +Q S DI+ M + Y + Sbjct: 851 SLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRARL 904 Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 +L VHDE+V E P + S+ + + M + Sbjct: 905 LLQVHDELVLEVPREEWPSLESKIKTTMEEA 935 >gi|160892692|ref|ZP_02073482.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] gi|156865733|gb|EDO59164.1| hypothetical protein CLOL250_00222 [Clostridium sp. L2-50] Length = 878 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 76/411 (18%), Positives = 144/411 (35%), Gaps = 69/411 (16%) Query: 155 AWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 A++ Y D+ R + + L ++ E + RG R+D + + Sbjct: 452 AYKALIPYLAGDLLMERLEKQEMFTLYNEIEMPTVYTLYDMEHRGIRVDRKALDDYSVKL 511 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 +L +I+ + L + LF G+ ++ + + + ++ Sbjct: 512 QSRIDELHTEIIGYAGKEF-NINSPKQLGVILFEDMGLSGGKKTKTGYSTSVD--VLEKI 568 Query: 274 AKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 D + + KLN+ L+ +S DGR+ GT + TGR S Q Sbjct: 569 KNDHPIIPAILEYRQLTKLNSTYAQGLTAYISEDGRIHGTFN-QTITATGRISSTDPNLQ 627 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + +R I +G V AD + IE RV Sbjct: 628 NIPMK------------------------LELGRLIRKAFIPEDGYVFVDADYSQIELRV 663 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 LA ++ + AF N DI+ TT ++ F+ PID+V+ QR K + + Y G Sbjct: 664 LAHLSEDQVMQNAFLNHVDIHATTASEVFDVPIDQVTSLQRRNAKAVNFGIVYGISAFGL 723 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HL 483 ++ ++++ K+ +F D + E+ + Sbjct: 724 SEDLGISRKEAADYIEKYFATYKNIKSFLDRQVEEAKADGVVRTMFGRIRPVPELRSSNF 783 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + A+ + GTA +++K A + +LQ+ +L Sbjct: 784 MTRSFGERVAMNSPIQGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDEL 834 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYF 642 R++G ++ N +Q + DI+ M K G ++L +HDE++ ET Sbjct: 785 TRSFGERVAMNSPIQGTAADIIKIAMFRVNMELKKRGLKSRLILQIHDELLVETAKDEVD 844 Query: 643 SVGTLCS 649 V + Sbjct: 845 IVKEIME 851 >gi|24216324|ref|NP_713805.1| DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] gi|24197598|gb|AAN50823.1|AE011518_2 DNA polymerase I [Leptospira interrogans serovar Lai str. 56601] Length = 917 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 92/573 (16%), Positives = 194/573 (33%), Gaps = 103/573 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKL---WDRTEQSAM 53 L +D ET SP P A AE L ++ ++ V + + ++ Sbjct: 340 RVLSVDTETTSPNP-------AMAE-----LVGISFSNQEKTGFYVSVKNNASLFQDKSL 387 Query: 54 -PSDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 ++ ++L V V N ++ I+ + G + + ++ T + + Sbjct: 388 NLDEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQF-DTMLASYVLRPEGRR 445 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 N + L K I + T + + EY D + Sbjct: 446 HNM-------DDLAKEFLNYNTITYEDLVGTGKKKKELTDIDP----EQVAEYAAEDADV 494 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L++ L + E L + + G +D+ +L +E + Sbjct: 495 TFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRH 554 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKD 276 L+ +I + G + T L+ LF + +V ++ T +L + Sbjct: 555 LESEIHRQAGGPFNIA-STKELQKILFDNLKLRIVKKTQTGFSTDHEVLEELVGEHPIIE 613 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L+ + ++ L + V+ GR+ + A+ TGR S QN+P ++R Sbjct: 614 KLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIRDR 672 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAG 394 +R + SN +++ D + IE R++A I+ Sbjct: 673 ------------------------EGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHISK 708 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 + ++A+ +G DI+ T A + P V+ E R KV+ ++ Y G ++ + Sbjct: 709 DPAMLEAYNHGLDIHKRTAAALYGVPETDVTHEMRDKAKVVNFSVIYGVTPYGLSRNLRI 768 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 ++++ ++ D S H ++ Sbjct: 769 PRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKSAKEAA 828 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ + GT+ +++K A H+ + + Sbjct: 829 KRIAINSPIQGTSADMIKIAMIKIHEDIEKKHY 861 >gi|220931331|ref|YP_002508239.1| DNA polymerase I [Halothermothrix orenii H 168] gi|219992641|gb|ACL69244.1| DNA polymerase I [Halothermothrix orenii H 168] Length = 870 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 94/571 (16%), Positives = 177/571 (30%), Gaps = 101/571 (17%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 L+ T+ + S L L D +V NS + KK DI + + +L Sbjct: 344 GEGNLYIFTDINEAISILKPILTDISVKKYILNSKECTVFLKKH---DIELEGLVFDPLL 400 Query: 100 ARTNGLPSS-------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 A PS L + L+L+ E + + L F + Sbjct: 401 AYYLLKPSGKLPGLRDLLDQELSLSLPEDIKEDN----LYLVFMDNIFKLAEGMVPKLED 456 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 ++ +LF +D E L + + G ++D + + L Sbjct: 457 MELIELF---------------------NDIEIPLITVLAELEYNGIKVDAEYLESLSRK 495 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 +E L+ I +L + L LF G+ ++ ++ + + Sbjct: 496 WEEELNGLESKIHELAGEKF-NINSPKQLGGILFEKLGLPVIKKTK--TGYSTGAKVLEK 552 Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQ 326 L + L S ++KL + L ++ D GRL + + TGR S Sbjct: 553 LEDKHPIIPLISEYRQLMKLKSTYVDALPPMINPDTGRLHTSFN-QMVTATGRLSSTEPN 611 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385 QN+P + +R I L+ AD + IE Sbjct: 612 LQNIPVRT------------------------DEGREIRRAFITENEDWVLLAADYSQIE 647 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444 RVLA I+ ++ AF G+DI+ T ++ F D+V+ R KV+ + Y Sbjct: 648 LRVLAHISDDEGLKAAFNTGQDIHTQTASEVFEVEPDEVTPNMRRHAKVINFGIAYGMSP 707 Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 A+ + ++ + + + + S Sbjct: 708 YGLARDLGISRQEASDYINKYFERFTGVKDYMERVVTEAKTKGYVTTIFNRRRYIPEINS 767 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534 + + A+ + GTA +++K A + + ++ + + V Sbjct: 768 RNYHRRSFAERTAINTPIQGTAADIMKLAMIKVYNRLKENGSPARILLQVHDELILEVPR 827 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 R+ K + + L S Sbjct: 828 EDLTEMARIVKSEMEKAVDMKVPLVVNLESG 858 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMK----NATKNG--YDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M +NG I+L VHDE++ E P + + Sbjct: 785 IQGTAADIMKLAMIKVYNRLKENGSPARILLQVHDELILEVPREDLTEMARIVK 838 >gi|260060686|ref|YP_003193766.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] gi|88784816|gb|EAR15985.1| putative DNA polymerase I [Robiginitalea biformata HTCC2501] Length = 942 Score = 246 bits (629), Expect = 7e-63, Method: Composition-based stats. Identities = 101/613 (16%), Positives = 195/613 (31%), Gaps = 107/613 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE-----PVKLWDRTEQSAMPSDLLQYL 61 D ET S PL +A + A++W+ PV + +L + Sbjct: 374 DTETTSLDPL----------EAELVGIAFSWEAHKGFYLPVPEGREAAGEVL-EELRPFF 422 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSE 120 +T+ V N ++ + IP + + ++LA LA + Sbjct: 423 ESDTIEKVGQNLKYDIKVLSTY---GIPVRGPLFDTMLAHYLINPDMRHNMDVLAETYLN 479 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 + LI + KG D + + Y D + T +L + P Sbjct: 480 YTP--VPISDLIGK--KGKNQLSMRDVPLEDQTE-------YAVEDADITLQLAQLFGPE 528 Query: 180 ---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + E L + + G +D + KL + ++ + L I + Sbjct: 529 LREAQTEELFKEIEIPLLRVLADMELEGINLDTGFLEKLSGELEKDIEGLVGKIYEAAGE 588 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + T + + ++ LAK+ + ++ + Sbjct: 589 EF-NIGSPKQLGEILFDKMKLVDKPKKTRTGQYSTAEDVLSGLAKEHEIVQMVLDYRGLT 647 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + V+ GR+ + TGR S QN+P + Sbjct: 648 KLKSTYVDALPQQVAPSTGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER-------- 698 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I +L+ AD + IE R++A ++ ED I++F Sbjct: 699 ----------------GRQIRKAFIPRSPEYQLLAADYSQIELRIIAALSEEDTMIESFK 742 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 GEDI+ T A+ F P+++V++EQR+ K + + Y G + + + Sbjct: 743 RGEDIHAATAAQVFQVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTNLSRTEAKELI 802 Query: 460 QQFSQNVKSTS-TFEDWEQAESHHLWMQD--------------------QYPEFAVKDKL 498 + + D H ++Q AV + Sbjct: 803 DTYYKTYPKLRNYISDQIDFAREHGYVQTVLGRRRYLKDINGSNAVVRGAAERNAVNAPI 862 Query: 499 IGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV 558 G+A +++K A +Q + + + + V + R + Sbjct: 863 QGSAADIIKIAMIRIYQKLRE--------GNFKTRMLLQVHDELVFDCYRGEADTVSALI 914 Query: 559 HIVLPSSRRLVYS 571 + S+ L Sbjct: 915 KSEMESAYELAVP 927 >gi|120434510|ref|YP_860207.1| DNA polymerase I [Gramella forsetii KT0803] gi|117576660|emb|CAL65129.1| DNA polymerase I [Gramella forsetii KT0803] Length = 942 Score = 246 bits (629), Expect = 8e-63, Method: Composition-based stats. Identities = 100/609 (16%), Positives = 204/609 (33%), Gaps = 105/609 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA----MPSDLLQYLR 62 D ET S L A + A++W+ E+ + +L + Sbjct: 374 DTETTSLNTL----------DAELVGIAFSWEAGKGFYLPFPEEKKEAQKLIEELRNFFE 423 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121 ++ + + N ++ + K I K + +++A LA + + Sbjct: 424 NDKIEKIGQNLKYDIKVLDKY---KIDVKGALFDTMIAHYLINPDMRHNMDVLAETYLNY 480 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 + LI + K + EY D + T +L Sbjct: 481 TP--QPISELIGKKGKNQGSMRDVALDKQT---------EYAVEDADITFQLKNLFEKEL 529 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++ E L + + G ++D + + L E +A + K L+ I + Sbjct: 530 EEAETRKLFNEIEIPLVEVLADMELEGIKLDEEYLKSLSEALASDIKDLETKIYEAAGEE 589 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 S L + LF + T + S ++ LA++ + + ++K Sbjct: 590 FLIS-SPKQLGIILFEKMELSKKPKKTKTGQYSTSEDVLSSLAEENDIVQHVLDYRGLVK 648 Query: 292 L-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L V + GR+ A+ TGR S QN+P + Sbjct: 649 LQNTYVDALPNQVERTTGRVHTDYVQTTAA-TGRLSSNNPNLQNIPIRTER--------- 698 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 VR + L+ AD + IE R++A ++ E+ I+AF + Sbjct: 699 ---------------GKQVRKAFVPRDENYVLLAADYSQIELRIIAALSNEENMIQAFKD 743 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 GEDI+ +T AK FN P+++V++EQR+ K + + Y G + S + Sbjct: 744 GEDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRSESKELID 803 Query: 461 QFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLI 499 + + S F + S + ++ AV + Sbjct: 804 TYYKTYPKLSNFIADQVEFARENGHVSTVLGRRRYLKDINSRNAIVRGAAERNAVNAPIQ 863 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 G+A +++K A H+ + + + + V + + + + ++ + Sbjct: 864 GSAADIIKLAMINIHKKLKEENY--------KTKMLLQVHDELVFDAHKDELEKVQKMIK 915 Query: 560 IVLPSSRRL 568 + ++ +L Sbjct: 916 SEMENAYKL 924 >gi|86157736|ref|YP_464521.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] gi|85774247|gb|ABC81084.1| DNA polymerase I [Anaeromyxobacter dehalogenans 2CP-C] Length = 897 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 78/413 (18%), Positives = 149/413 (36%), Gaps = 59/413 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + ER L + + G +D + + + + L+ I + T L Sbjct: 498 EVERPLVPVLVEMERAGILVDRGAMEGMSAEFGKAMQDLEARIHAAAGHPF-NVASTREL 556 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 LF+ + +V + + +LA+ L RL ++ KL + L Sbjct: 557 AQVLFVELELPVVKRLKTG--PSTDQDVLEKLAEQHALPRLVLEHRSLSKLKGTYVDALP 614 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + V DGR+ T GA+ TGR S QN+P + Sbjct: 615 QLVDPADGRIHTTFHQAGAA-TGRLSSSDPNLQNIPVRT--------------------- 652 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 S +R +A G +L+ AD + IE R+LA + + ++AF + ED++ T A+ Sbjct: 653 ---ELSRRIRQAFVAPAGARLLSADYSQIELRILAHYSDDPGLLQAFRDREDVHTRTAAE 709 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F ++V+ +QR I KV+ + Y G ++ S + ++ Sbjct: 710 TFGVAPEQVTPDQRRIAKVLNFGIAYGLSAFGLSQRLDLPPSEAQGIIDRYFTRYAGVRR 769 Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + +W + + + +++ A+ + GTA ++VK A Sbjct: 770 YIEWAVEEARAKGESRTLFGRARAMPEIAARNPALRNAAERTAINTPIQGTAADVVKIAM 829 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 H + Q ++ + + R + V LV R + + +P Sbjct: 830 IRVHAALAQERREARLLLQVHDELVLEVPERELEPVEALVRREMEGAARLKVP 882 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 21/80 (26%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS------ 649 +Q + D++ M + ++L VHDE+V E P+ V L Sbjct: 817 IQGTAADVVKIAMIRVHAALAQERREARLLLQVHDELVLEVPERELEPVEALVRREMEGA 876 Query: 650 ---------LMTKNPSWAKG 660 + +WA+G Sbjct: 877 ARLKVPLEVQVGHGQTWAEG 896 >gi|189499514|ref|YP_001958984.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] gi|189494955|gb|ACE03503.1| DNA polymerase I [Chlorobium phaeobacteroides BS1] Length = 936 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 103/590 (17%), Positives = 187/590 (31%), Gaps = 95/590 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQY 60 ID ET S AE I++C W T++ P L Sbjct: 366 SIDTETTSLNTFE-------AELVGISIC---WKPGEAYFIHFTDKELSAKTFPGKLQDV 415 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + + N ++ ++ K + + + T + + LA Sbjct: 416 LENPDIKKTGQNLKYDILVLKNH-HVRLAPVGF-DTMLASYVINPEEKHNLDDLAKKHLN 473 Query: 121 HLT-----KMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELF 174 H T GK I Y C A+ +Q Q + E + Sbjct: 474 HRTITYSELTGTGKKAIPIREVPIDRLTVYACQDADVALQLEQKQKILLGENSELEQLCV 533 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 E L + + G +D + + E + ++ +L E I T G I + Sbjct: 534 N-------IEFPLVEVLADMEYLGIALDTAQLERTAETVNRQLLELTERIYD-TAGTIFN 585 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L LF + G+ ++ ++ + S I +AKDL+ R + Sbjct: 586 IDSPKQLGNVLFNVLGLPAKKTTKTGFSTNVQVLEDLSLIHPVAKDLLEYR-SLQKLKTT 644 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + ++ GR+ + + + TGR S QN+P Sbjct: 645 YIDALPKILNPKTGRVHTSFNQH-ITATGRLSSSNPNLQNIP------------------ 685 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 I PLG +R I S + + L+ AD + IE R+ A I+ + I AF N EDI Sbjct: 686 ---IRTPLG---REIRKAFIPSTSDRYLLSADYSQIELRIAAEISQDSHLIDAFRNREDI 739 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T F+T D ++K+ R K + + Y G A+ + + Sbjct: 740 HTATAKTIFDT--DDITKDMRRKAKEVNFGVLYGIQPYGLAQRLNISQKEAKAIIDTYIS 797 Query: 465 NVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKLIGTAC 503 + E+ + ++ A+ + GTA Sbjct: 798 KYPGLFSALQTTITEAAEKGYVTTLTGRRRYIENLRSRNRNIRMAAERAAMNTPIQGTAA 857 Query: 504 ELVKKAWRAKHQGVLQLWK------DLTEGFACVVQEGGSISARRVANVP 547 +++K A + + + + + E + +A Sbjct: 858 DIIKCAMGLVSEAIKKKRMQSAMLLQVHDELVFETTEEEKAALAEIAEGC 907 >gi|169348423|ref|ZP_02866361.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] gi|169293892|gb|EDS76025.1| hypothetical protein CLOSPI_00138 [Clostridium spiroforme DSM 1552] Length = 873 Score = 246 bits (628), Expect = 8e-63, Method: Composition-based stats. Identities = 88/534 (16%), Positives = 178/534 (33%), Gaps = 76/534 (14%) Query: 31 TLCAYAW-DDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 + +A ++ D E + + ++ DE++ ++ + Sbjct: 332 LIVGFAIYNNSEAYYIDI-ENAIKCQNFQNFINDESIEKYGYDIKK---CINAAKWHGLE 387 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 K ++ LA PS + ++ + + + + KG+ P Sbjct: 388 IKNYVFDLQLASYILNPSLKDEIRSVCEYYDYYDVLYDEEV----YGKGAKKKIPETTAI 443 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLK 208 A+H+ Q Y +D + + L D E + + ++ +G +ID D++ Sbjct: 444 ADHLIK-QAKAIYVLKDKAIEKLKQENQFDLYKDVEMPVAKILASMEYQGAKIDKDVLKD 502 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L+ +E + L+++I +L + + L LF G+ ++ + + Sbjct: 503 LENQFGKEIEVLEKEIHQLANKNFNIA-SPKQLGEVLFEDLGLPNGKKTKTGYSTSVDIL 561 Query: 269 NITQLAKDLILNRLA---SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 N + +I L S + L E + DG++ ++TGR S Sbjct: 562 NKLKDVHPIINKVLQYRTLSKLYSTYIIGLQEQIFVDGKIHTIYN-QALTQTGRLSSTDP 620 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R I LV D + IE Sbjct: 621 NLQNIP------------------------VKTAEGKLIRKAFIP-EYDYLVSFDYSQIE 655 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG- 444 RVLA +A IKAF +DI+ T ++ F D+V R K + + Y Sbjct: 656 LRVLAHLANVKSLIKAFNEDKDIHRHTASEIFGVDEDEVDSTMRRNAKAVNFGIIYGMSD 715 Query: 445 ---AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 A+ + ++++ +N T+ D + Sbjct: 716 FGLAEQVGVPVNEARNFIKRYFENYPEIKTYMDNNIEFCKKNGYVTTMLNRKRFIREINE 775 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + Q+ A+ + G+A +++K A K + +LQ+ +L Sbjct: 776 KNYMRQELGKRLAMNSPIQGSAADIIKVAMIKVDELFKKHNLKSKMILQVHDEL 829 Score = 37.8 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 15/152 (9%) Query: 497 KLIGTACELVKKAWR----AKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551 ++ G + V R A + G++ D V + +R + Sbjct: 685 EIFGVDEDEVDSTMRRNAKAVNFGIIYGMSDFGLAEQVGVPVNEARNFIKRYFENYPEIK 744 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 ++ + + K +N MR+ G +L N +Q + DI+ Sbjct: 745 TYMDNNIEFCKKNGYVTTMLNRKRFIREIN--EKNYMRQEL-GKRLAMNSPIQGSAADII 801 Query: 611 CEGMKNAT------KNGYDIVLTVHDEIVSET 636 M ++L VHDE++ + Sbjct: 802 KVAMIKVDELFKKHNLKSKMILQVHDELIFDV 833 >gi|110597086|ref|ZP_01385375.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] gi|110341277|gb|EAT59742.1| DNA polymerase I [Chlorobium ferrooxidans DSM 13031] Length = 944 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 104/560 (18%), Positives = 181/560 (32%), Gaps = 93/560 (16%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRTEQSAMPSDLLQY 60 ++ +D ET S L + E + S P L+ Sbjct: 372 RIAVDTETTS------------LNTFEAELAGISISTEARKARFIALANSSLNPQSALEL 419 Query: 61 LR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 LR + + N ++ ++ KK GID+ + T + + LA Sbjct: 420 LRPLLENPELPKTGQNLKYDILVLKKY-GIDLTPVGF-DTMLASYVLDPEEKHNLDDLAA 477 Query: 117 NFSEHLTKMEE-----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + T E GKA + F Y C A+ + E ++ +E + Sbjct: 478 RHLGYKTTTFEELTGTGKAKLHIFDVEPEQLSDYACQDADLALQLE---EIFRKKLEGEK 534 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 EL E L + + G ID + K E + +E + L E I + Sbjct: 535 ELLWLC---EHIEFPLVSVLAAMEHAGICIDTPHLEKTSEAVGKELELLTEKIYAASGAP 591 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSG 286 + L LF + G+ ++ + + + +LA+ +L Sbjct: 592 F-NIDSPKQLSNILFNVLGLPTKKSTKTGFSTNVE--VLEELAELHPVVASLLEYRTLQK 648 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + V+ GRL + + + TGR S QN+P Sbjct: 649 LKTTYIDALPKIVNPLTGRLHTSFNQF-ITATGRLSSSNPNLQNIP-------------- 693 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 I PLG +R I S K L+ AD + IE R+ A I+G+ I+AF N Sbjct: 694 -------IRSPLG---KEIRRAFIPSSPDKWLLSADYSQIELRIAAEISGDPQLIEAFRN 743 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 EDI+ T F D+++ + R K + + Y G +K S + Sbjct: 744 REDIHTATARVIFG--SDEITPDMRRKAKEVNFGVLYGIMPFGLSKRLNIPRSEAIAIID 801 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + S + +Q A+ + Sbjct: 802 TYKAKYPGLFLALQEIIETGKKDGYVSTLLGRRRYIADLNSRNSNIQKAAERAAMNTPIQ 861 Query: 500 GTACELVKKAWRAKHQGVLQ 519 GTA +++K A + + + Sbjct: 862 GTAADIIKCAMNLCSERLRK 881 >gi|45656484|ref|YP_000570.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45599719|gb|AAS69207.1| DNA polymerase I [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 917 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 94/575 (16%), Positives = 194/575 (33%), Gaps = 107/575 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKL---WDRTEQSAM 53 L +D ET SP P A AE L ++ ++ V + + ++ Sbjct: 340 RVLSVDTETTSPNP-------AMAE-----LVGISFSNQEKTGFYVSVKNNASLFQDKSL 387 Query: 54 -PSDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 ++ ++L V V N ++ I+ + G + + ++ T + + Sbjct: 388 NLDEVREHLGPVLSSQVPKVGQNIKYDLIVLENH-GFVLNNIQF-DTMLASYVLRPEGRR 445 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 N + L K I + T + + EY D + Sbjct: 446 HNM-------DDLAKEFLNYNTITYEDLVGTGKKKKELTDIDP----EQVAEYAAEDADV 494 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L++ L + E L + + G +D+ +L +E + Sbjct: 495 TFRLYQIFRKSIKDSGVEPILREMEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRH 554 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+ +I + G + T L+ LF + +V ++ H + +LA + + Sbjct: 555 LESEIHRQAGGPFNIA-STKELQKILFDDLKLRIVKKTQTGF--STDHEVLEELAGEHPI 611 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 KL + L + V+ GR+ + A+ TGR S QN+P + Sbjct: 612 IEKLLDYRKYTKLKSTYVDALPKMVNPKTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIR 670 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWI 392 +R +R + SN +++ D + IE R++A I Sbjct: 671 DR------------------------EGRLLRKGFTVDSNDYEILSLDYSQIELRIMAHI 706 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 + + ++A+ +G DI+ T A + P V+ E R KV+ ++ Y G ++ Sbjct: 707 SKDPAMLEAYNHGLDIHKRTAAALYGVPEIDVTHEMRDKAKVVNFSVIYGVTPYGLSRNL 766 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487 + ++++ ++ D S H ++ Sbjct: 767 RIPRDEAKSFIERYMTQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPVTDINSTHKSAKE 826 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 A+ + GT+ +++K A H+ + + Sbjct: 827 AAKRIAINSPIQGTSADMIKIAMIKIHEDIEKKHY 861 >gi|61611902|gb|AAX47270.1| DNA polymerase large fragment [Thermus aquaticus] Length = 554 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 76 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 132 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 133 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 185 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 186 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTENTGKRSTSAAVLEAL 244 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 245 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 303 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 304 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 339 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 340 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRTAKTINYGVLYGMSAHH 399 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 400 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 459 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 460 KSVREAAERMAFNMPVQGTAADLMKLAMVKLLPRLEEMGARMLLQVHDELVLEAPKERAE 519 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 520 AVARLAKEVME 530 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 368 MFGVPREAVDPLMRRTAKTINYGVLYGMSAHHLSQELAIPYEEAQAFIERYFQSFPKVRA 427 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 428 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 487 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 488 VKLLPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 529 >gi|327403203|ref|YP_004344041.1| DNA polymerase I [Fluviicola taffensis DSM 16823] gi|327318711|gb|AEA43203.1| DNA polymerase I [Fluviicola taffensis DSM 16823] Length = 951 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 95/532 (17%), Positives = 181/532 (34%), Gaps = 93/532 (17%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D+ E A+ + + +++ +AHN ++ + + + + +++A Sbjct: 416 DKKEIQAIVDEFKPFFEHKSIEKIAHNMKYDIQVLHRY---GVQFAGPLFDTMIAHYLIQ 472 Query: 106 PSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P S + LA + + E LI + KG + + +Y Sbjct: 473 PESKQGMDFLAEYYLNYTPVSIE--TLIGKKGKGQGNMGDLQP---------EAISDYAC 521 Query: 165 RDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T +L + P D E L + + + G ID+ + + +A Sbjct: 522 EDADITFQLKQLFAPQIEKDHLKSLFYDMEMPLVSVLAEMEEEGVAIDIPHLEAYSKQLA 581 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 +E + L++ I +L + L LF I T + S + Q Sbjct: 582 EETEGLEKRIKELAGMDF-NVDSPKQLGDVLFEHMKISSKAKKTKTGQYATSEDILQQHK 640 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 D + + KL + L DGR+ + + TGR S Q Sbjct: 641 NDHEIIPCILDYRQMKKLKSTYVDPLPTMKDPVDGRVHTSY-MQTVTATGRLSSNNPNLQ 699 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 N+P + +R IA +L+ AD + IE R Sbjct: 700 NIPIRSER------------------------GKEIRRAFIARSKDFQLMSADYSQIELR 735 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 ++A +A + I+AF + DI+ T AK F+ +D V+K+QR+ K + + Y A Sbjct: 736 IIAALADDTNMIQAFKDKVDIHRATAAKVFHVELDDVTKDQRSAAKAVNFGIIYGQSAFG 795 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482 + + + + + T+ D S + Sbjct: 796 LSQNLGISRTEAKQIIDSYFAQYSTIKTYMDNAVKDARENGYVETIMQRRRYLPDINSAN 855 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 ++ AV + G+A ++VK A + K + +LQ+ +L Sbjct: 856 AVVRGFAERNAVNAPIQGSAADIVKLAMVAVDKAMKKAKVKSKMILQVHDEL 907 >gi|255306032|ref|ZP_05350204.1| DNA polymerase I [Clostridium difficile ATCC 43255] Length = 882 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 88/539 (16%), Positives = 184/539 (34%), Gaps = 93/539 (17%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 + D E + D E S + S + + +N + I K +I + Sbjct: 343 SVDGEKIYYVDSNEVSKLDSIF----SNNEIKKYGYNLKDDYISLK---PYNINLENMYF 395 Query: 96 TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +A +S + +A+ + K +E + S Y+ Sbjct: 396 DITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKE------ELLGKGVKSKNYEDLEFED 449 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLV 206 + + ++ E + L+ +S E L + + G ++D ++ Sbjct: 450 LAEYMGQIICTVKETVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +L + L+++I +L+ + L + LF + ++ ++ + Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTK--TGYSTN 564 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRW 320 + +L + + I+KLN+ L ++ + R+ + + TGR Sbjct: 565 ADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFN-QTITTTGRI 623 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R IA + KLV AD Sbjct: 624 SSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVDAD 659 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ V+ E R K + + Sbjct: 660 YSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGII 719 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G A ++ + F D Sbjct: 720 YGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYI 779 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + +S + +++ FA+ + G+A +++K A H+ +LQ+ +L Sbjct: 780 PEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQVHDEL 838 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 12/201 (5%) Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 Q + + S E+ +A HH + + + EL A +A + G Sbjct: 659 DYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA-KAVNFG 717 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 ++ D + A+ + K + + + Y+ + Sbjct: 718 IIYGKSDFGLADDLNIP---VPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774 Query: 577 CSYLNTATSQLMRERTYGGK-LTENI-VQAISRDILCEGMKNATKNGY------DIVLTV 628 GK N +Q + DI+ M N K ++L V Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834 Query: 629 HDEIVSETPDTPYFSVGTLCS 649 HDE++ E D V + Sbjct: 835 HDELIVEAIDDEIDIVKKIVK 855 >gi|146299377|ref|YP_001193968.1| DNA polymerase I [Flavobacterium johnsoniae UW101] gi|146153795|gb|ABQ04649.1| DNA polymerase I [Flavobacterium johnsoniae UW101] Length = 949 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 94/544 (17%), Positives = 185/544 (34%), Gaps = 88/544 (16%) Query: 27 QAVITLCAYAWDDEP---VKLWDRTEQSA-MPSDLLQYLRDETVMCVAHNSLFERILFKK 82 A + +++++ V + E++ + + + +E + + N ++ + Sbjct: 390 HAELVGMSFSYEKGKAFYVPFPESQEEAKVLIDKFVPFFENENIEKIGQNLKYDLKILSN 449 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 G+ + K + T + LA + ++ K E LI + KG Sbjct: 450 Y-GVTVKGKLF-DTMIAHYLINPDMRHNMDILAETYLKYSPKSIE--TLIGK--KGKNQL 503 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFK------------RLIPLSDGERDLWLL 190 D + EY D + T +L + +L + E L + Sbjct: 504 SMRDVPLEDI-------KEYAAEDADVTLQLKEIFTAELEKTETKKLFD--EIEIPLVSV 554 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G R+D++ + ++ + + E K L+E I + + L LF Sbjct: 555 LADMETEGIRLDVEFLKQMSKEMDVEIKSLEEQIYETAGEKFNLA-SPKQLGDILFDKLK 613 Query: 251 IDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-----TLSEAVSSDGR 304 I + T + +T LA D + + ++KL L E V Sbjct: 614 IGGAKQKKTKTGQYATGEEVLTYLANDNPIVKQILDWRQMVKLQSTYILALPEQVDKKTL 673 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 T + TGR S QN+P + + Sbjct: 674 RVHTDYMQTVAATGRLSSNNPNLQNIPIRTER------------------------GRQI 709 Query: 365 RSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R +A L+ AD + IE R++A ++GE+ I AF NGEDI+ T AK F+ +++ Sbjct: 710 RKAFVARDENYTLISADYSQIELRIIAALSGEENMIAAFQNGEDIHRATAAKVFDVALEE 769 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 VS+EQR+ K + + Y G + S + + + ++ + Sbjct: 770 VSREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRSESAALIDAYYKTYPRLKSYISEQVDF 829 Query: 480 SHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + ++ AV + G+A +++K A H+ + Sbjct: 830 AREKGYVQTILGRRRYLKDINSANAVVRSAAERNAVNAPIQGSAADVIKIAMINIHKKLR 889 Query: 519 QLWK 522 + Sbjct: 890 EENW 893 >gi|121534305|ref|ZP_01666129.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] gi|121307075|gb|EAX47993.1| DNA polymerase I [Thermosinus carboxydivorans Nor1] Length = 874 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 92/548 (16%), Positives = 170/548 (31%), Gaps = 108/548 (19%) Query: 44 LWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +WD +P V +N+ + + LA Sbjct: 366 VWDLLADETIP-------------KVTYNAK--DVC-NACKAKGTELRGLCFDIQLAAYL 409 Query: 104 GLPSSLK-----NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 P++ K AC L + K + +P Y W Sbjct: 410 LEPTAAKYPLTELACQHLGLAVGDM------------DKEHLGTPDYA--------GWAA 449 Query: 159 FGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 V + + L L + E L + + G R+DL + L + I Sbjct: 450 EVVQRLYPVLKEKLVAAGLAELYEEIELPLVPVLSEMEIAGIRVDLTQLDALAQEITDRI 509 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLA 274 + L +I +L + T L LF + + ++ ++ T +L Sbjct: 510 ETLLTEIYQLAGQEF-NVNSTRQLGHILFEVLKLPVIKKTKTGYSTDAEVLEKLAGQHPL 568 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 D +L + L+ L + + +D GR+ + TGR S QN+P + Sbjct: 569 IDCLLEYRLLTKLKSTYLDGLRDLIRADTGRIHTHFN-QTVTATGRLSSSEPNLQNIPIR 627 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWI 392 +R + G ++ AD + IE RVLA + Sbjct: 628 T------------------------EIGRRIRELFVPGPGYDWIMSADYSQIELRVLAHM 663 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 +G+D I AF + +DI+ T A+ F P+ +V+ + RA K + + Y G ++ Sbjct: 664 SGDDNLIDAFRHNQDIHTHTAAEVFGVPMAEVTAQMRARAKAVNFGIVYGISDFGLSRDI 723 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ-------------------- 488 G + + + + D + Sbjct: 724 GVSRKEAGQYIDSYFAKYRGVKNYIDNVINLARQQGYVTTLFGRRRFLPDINSGNFNQRA 783 Query: 489 -YPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537 A+ + GTA +++KKA R K + +LQ+ +L A + + Sbjct: 784 FAERTAMNTPIQGTAADIIKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVA 843 Query: 538 ISARRVAN 545 ++ Sbjct: 844 QLVKQAME 851 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 +Q + DI+ + M + ++L VHDE+V E + V L M Sbjct: 794 IQGTAADIIKKAMITVYRQLRDRRLKSRLLLQVHDELVLEVAEAERVLVAQLVKQAMEDA 853 Query: 655 PSWAKGLPLKAE 666 + A +PL A+ Sbjct: 854 VTLA--VPLVAD 863 >gi|312891159|ref|ZP_07750681.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] gi|311296326|gb|EFQ73473.1| DNA polymerase I [Mucilaginibacter paludis DSM 18603] Length = 936 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 89/608 (14%), Positives = 181/608 (29%), Gaps = 95/608 (15%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP---VKL-WDRTEQSAMPSDL 57 + D ET + + +++ V + + E + + Sbjct: 363 KSICFDTETT-GTDANQC---------ELVGLSFSIKKGEAWYVPVPVNCDEIQPIVDEF 412 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + + + N F+ ++ K + + + + T + + LA N Sbjct: 413 KPIFENPAIGKIGQNIKFDMLVLK-YYNVTMQGELF-DTMLAHYIIDPDTRHNMDILAEN 470 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + LI KG + + +Y D + T +L + Sbjct: 471 YLGYSP--VSITTLIGAKGKGQGTMRDVEIEKI---------KDYAAEDADVTLQLKEVF 519 Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P +D E L + I G RID D + + + + + KL++ + + Sbjct: 520 EPKLQQVGGTKLATDIENPLIYVLADIEFEGVRIDHDTLKEFSKDLETDISKLEKTVYEK 579 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF +D T + + LA + R Sbjct: 580 AGVKFNIA-SPKQLGEVLFEKLNLDAKAKKTKTGQYQTGEDVLLALANKSDIVRDILDFR 638 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V+ GR+ + + TGR S QN+P + Sbjct: 639 QLQKLKSTYVDALPLMVNPKTGRVHTSYN-QAVAATGRLSSNNPNLQNIPIRTER----- 692 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 VR I + +V AD + IE R++A I+ + + Sbjct: 693 -------------------GREVRKAFIPRNDDHVIVSADYSQIELRIIAEISKDANMMD 733 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456 AF G DI+ T AK + +D+V R K + + Y A + Sbjct: 734 AFIQGIDIHTATAAKVYGKTLDEVDGTMRRNAKAVNFGIIYGQSAFGLSQNLNIPRKEAA 793 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 + Q+ + + + ++ A+ Sbjct: 794 DIIDQYFAQYPGIKNYMSDTMNFARENGFVQTLMGRRRYLRDINSANATVRGYAERNAIN 853 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + G+A +++K A H+ + D + + + V ++M+ + Sbjct: 854 APIQGSAADMIKIAMINIHREFKKQKLDSRMTMQVHDELVFDVHQSEIEIVKPIIMQNMQ 913 Query: 556 RDVHIVLP 563 +P Sbjct: 914 TAFKTEVP 921 >gi|232010|sp|P30313|DPO1F_THETH RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tfl polymerase 1 gi|281488|pir||S26675 DNA-directed DNA polymerase (EC 2.7.7.7) I - Thermus aquaticus gi|48166|emb|CAA46900.1| DNA-directed DNA polymerase [Thermus thermophilus] Length = 831 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 93/488 (19%), Positives = 163/488 (33%), Gaps = 65/488 (13%) Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 G+ L L E L E ++ + ++ P R + + GE Sbjct: 346 GVRGILAKDLAVLALREGLDLFPEDDPMLLAYLLDPSNTTPEGVARRYGGEWTEDAGERA 405 Query: 164 KRDVEATRELFKRL-------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + L +RL + E+ L + + G R+D+ + L + E Sbjct: 406 LLAERLFQTLKERLKGEERLLWLYEEVEKPLSRVLARMEATGVRLDVAYLQALSLEVEAE 465 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK- 275 ++L+E++ +L + L LF G+ + +E T K S + + L + Sbjct: 466 VRQLEEEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREA 524 Query: 276 ----DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 D IL + ++ L V GRL A+ TGR S QN+ Sbjct: 525 HPIVDRILQYRELTKLKNTYIDPLPALVHPKTGRLHTRFN-QTATATGRLSSSDPNLQNI 583 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G LVV D + IE RVLA Sbjct: 584 PVRT------------------------PLGQRIRRAFVAEEGWVLVVLDYSQIELRVLA 619 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----K 446 ++G++ I+ F G DI+ T + F + V R K + + Y A Sbjct: 620 HLSGDENLIRVFQEGRDIHTQTASWMFGVSPEGVDPLMRRAAKTINFGVLYGMSAHRLSG 679 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------M 485 ++++ Q+ + + E + Sbjct: 680 ELSIPYEEAVAFIERYFQSYPKVRAWIEGTLEEGRRRGYVETLFGRRRYVPDLNARVKSV 739 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW-KDLTEGFACVVQEGGSISARRVA 544 ++ A + GTA +L+K A + +L + L + +V E A RVA Sbjct: 740 REAAERMAFNMPVQGTAADLMKLAMVRLFPRLQELGARMLLQVHDELVLEAPKDRAERVA 799 Query: 545 NVPRLVMR 552 + + VM Sbjct: 800 ALAKEVME 807 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 55/162 (33%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G + E V R + + + ++ A + + Sbjct: 645 MFGVSPEGVDPLMRRAAKTINFGVLYGMSAHRLSGELSIPYEEAVAFIERYFQSYPKVRA 704 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 705 WIEGTLEEGRRRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAM 764 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P V L +M Sbjct: 765 VRLFPRLQELGARMLLQVHDELVLEAPKDRAERVAALAKEVM 806 >gi|254974662|ref|ZP_05271134.1| DNA polymerase I [Clostridium difficile QCD-66c26] gi|255092051|ref|ZP_05321529.1| DNA polymerase I [Clostridium difficile CIP 107932] gi|255313787|ref|ZP_05355370.1| DNA polymerase I [Clostridium difficile QCD-76w55] gi|255649569|ref|ZP_05396471.1| DNA polymerase I [Clostridium difficile QCD-37x79] gi|260682732|ref|YP_003214017.1| DNA polymerase I [Clostridium difficile CD196] gi|260686330|ref|YP_003217463.1| DNA polymerase I [Clostridium difficile R20291] gi|306519696|ref|ZP_07406043.1| DNA polymerase I [Clostridium difficile QCD-32g58] gi|260208895|emb|CBA61872.1| DNA polymerase I [Clostridium difficile CD196] gi|260212346|emb|CBE03147.1| DNA polymerase I [Clostridium difficile R20291] Length = 882 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 88/539 (16%), Positives = 184/539 (34%), Gaps = 93/539 (17%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 + D E + D E S + S + + +N + I K +I + Sbjct: 343 SVDGEKIYYVDSNEVSKLDSIF----SNNEIKKYGYNLKDDYISLK---PYNINLENMYF 395 Query: 96 TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +A +S + +A+ + K +E + S Y+ Sbjct: 396 DITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKE------ELLGKGVKSKNYEDLEFED 449 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLV 206 + + ++ E + L+ +S E L + + G ++D ++ Sbjct: 450 LAEYMGQIICTVKETIPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +L + L+++I +L+ + L + LF + ++ ++ + Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTK--TGYSTN 564 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRW 320 + +L + + I+KLN+ L ++ + R+ + + TGR Sbjct: 565 ADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFN-QTITTTGRI 623 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R IA + KLV AD Sbjct: 624 SSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVDAD 659 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ V+ E R K + + Sbjct: 660 YSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGII 719 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G A ++ + F D Sbjct: 720 YGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYI 779 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + +S + +++ FA+ + G+A +++K A H+ +LQ+ +L Sbjct: 780 PEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQVHDEL 838 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 12/201 (5%) Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 Q + + S E+ +A HH + + + EL A +A + G Sbjct: 659 DYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA-KAVNFG 717 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 ++ D + A+ + K + + + Y+ + Sbjct: 718 IIYGKSDFGLADDLNIP---VPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774 Query: 577 CSYLNTATSQLMRERTYGGK-LTENI-VQAISRDILCEGMKNATKNGY------DIVLTV 628 GK N +Q + DI+ M N K ++L V Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834 Query: 629 HDEIVSETPDTPYFSVGTLCS 649 HDE++ E D V + Sbjct: 835 HDELIVEAIDDEIDIVKKIVK 855 >gi|193216333|ref|YP_001997532.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] gi|193089810|gb|ACF15085.1| DNA polymerase I [Chloroherpeton thalassium ATCC 35110] Length = 931 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 91/575 (15%), Positives = 191/575 (33%), Gaps = 99/575 (17%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE----QSAMPSD 56 + + D ET S L A + ++++ E + Sbjct: 357 LKEFAFDTETTSLTTL----------DAELVGISFSFAPGEAFFVYCAESALSRETAIRV 406 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNAC 113 L L + + + N ++ ++ K G+ + R+ T + + + A Sbjct: 407 LKPILENPEIGKIGQNLKYDMLVLKNY-GVRVQPVRF-DTMLASYVLNPDKTHNLDDLAA 464 Query: 114 LALNFS--EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L ++ + +GK+ + + Y C A+ + E + E + Sbjct: 465 DHLGLETVKYADLVGKGKSEKSIYEVEPKTLSDYACQDADVALQLKNVLEKALGENEPLK 524 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++ + L E L + + G R+D+ ++ L E + E ++ + I Sbjct: 525 KICEEL------EFPLVGVLADMEHEGVRLDVAVLKTLSETLGTELGRVSKIIYDAAGEA 578 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF + ++ + +LA+ + + ++ K Sbjct: 579 F-NLDSPKQLSEILFEKLKLPAKRRTK--TGYSTDVRVLEELAESFPVAKQILEYRSLQK 635 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L V GR+ + + A+ TGR S QN+P + Sbjct: 636 LKSTYVDALPNLVHPKTGRIHTSFNQHIAA-TGRLSSSNPNLQNIPIRT----------- 683 Query: 346 ALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S+ L+ AD + IE R+ A ++G+ + AF N Sbjct: 684 -------------EIGREIRGAFVPSDAHHTLLSADYSQIELRIAAELSGDPTMLGAFQN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 EDI+ TT F D+V+K+ R K + + Y G A+ + + Sbjct: 731 REDIHSTTAKLIF--ETDEVTKDMRRKAKEVNFGVLYGIMPFGLAQRLDISQAEAKEIIS 788 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 Q+ + ++ + S + ++ A+ + Sbjct: 789 QYKEKYPMIFSYLEGILDKARASGYVETLLGRRRYIRDLNSKNFSIRSAAERAAINTPIQ 848 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDL 524 GTA +++KKA + + +LQ+ +L Sbjct: 849 GTAADMIKKAMLGIASDIHKQSLRSRMILQVHDEL 883 >gi|75674555|ref|YP_316976.1| DNA polymerase I [Nitrobacter winogradskyi Nb-255] gi|74419425|gb|ABA03624.1| DNA polymerase A [Nitrobacter winogradskyi Nb-255] Length = 1010 Score = 246 bits (627), Expect = 1e-62, Method: Composition-based stats. Identities = 96/492 (19%), Positives = 166/492 (33%), Gaps = 75/492 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L L + + N F +L + GI + + I A G S A LA Sbjct: 484 LKPILESRGHLKIGLNVKFSAVLLAQH-GIVMQNHDDIELISYALDAG-RGSHDLASLAK 541 Query: 117 NFS-----EHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCKRDVEA 169 + H G+ +A F + +ID ++ WQ+ E Sbjct: 542 RWLGHATVSHGELTGSGRNRLA-FDQVAIDRATAYAAEYADMTLRLWQVLKPRLV--AER 598 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +++ L ER + + RG ID ++ +L AQ +L+ +I +L Sbjct: 599 MNTVYETL------ERPMIATLAQMERRGITIDRQVLSRLSGEFAQSAARLEAEIQQLAG 652 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288 I + + +F G+ ++ T S + +LA+ R Sbjct: 653 EPI-NVGSPKQIGEIMFGKMGLPGGSKTK-TGAWSTSAQILDELAEQGHDFPRKILDWRQ 710 Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KL + L E V R T A+ TGR S QN+P Sbjct: 711 VSKLKSTYTDALPEYVHPQTRRVHTTYALAATTTGRLSSNEPNLQNIP------------ 758 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA+ G KLV AD + IE R+LA IA +AF Sbjct: 759 ------------VRNEEGRKIRRAFIAAPGHKLVSADYSQIELRLLAEIADIPVLKQAFR 806 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +G DI+ T ++ F P+ + E R K + + Y G A + Sbjct: 807 DGLDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLANQLGIPREEAAAYI 866 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + +S + + A+ +L Sbjct: 867 KKYFERFPGIRAYMDATREFCREHGYVTTLFGRKCHYPDIKSPNPSHRAFNERAAINARL 926 Query: 499 IGTACELVKKAW 510 G+A +++++A Sbjct: 927 QGSAADIIRRAM 938 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655 Q + DI+ M ++L VHDE++ E PD ++ + +M P Sbjct: 927 QGSAADIIRRAMARMDDALAARNLSARMLLQVHDELIFEVPDDEVAATLPVVQHVMQDAP 986 >gi|86131451|ref|ZP_01050049.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] gi|85817896|gb|EAQ39064.1| DNA-directed DNA polymerase [Dokdonia donghaensis MED134] Length = 949 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 102/611 (16%), Positives = 199/611 (32%), Gaps = 104/611 (17%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS----AMPSDLLQYLR 62 D ET PL A + A++W+ E A+ +L + Sbjct: 382 DTETTGLDPLV----------AELVGVAFSWEAGKGYYIPFPESKDEAQALIEELRPFFE 431 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLALNFSEH 121 + + N ++ + K D+ K + ++LA LA + + Sbjct: 432 HTGIEKIGQNLKYDIKVLAKY---DVKVKGKLFDTMLAHYLINPDMRHNMDVLAETYLNY 488 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-- 179 LI + KG D + Y D + T +L + Sbjct: 489 TP--VSITELIGK--KGKNQKSMRDVPLDQQTE-------YAVEDADITLQLKQHFEKEL 537 Query: 180 --------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +D E L + + G +D++ + L + + ++L +I + Sbjct: 538 DEAGTRKLFNDIEIPLLRVLAAMEVEGINLDVNFLESLSGDLNADIERLTSEIYEEAGEE 597 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + S L LF + T + + ++ LAKD + + + K Sbjct: 598 FKIS-SPKQLGEILFDKMKLVDKPKKTKTGQYSTAEDVLSYLAKDHDIIQKVLDYRGLSK 656 Query: 292 L-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + L E V+ DGR+ + TGR S QN+P + Sbjct: 657 LKSTYVDALPEQVAQDGRVHTDY-MQTVAATGRLSSNNPNLQNIPIRTER---------- 705 Query: 347 LNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 VR + L+ AD + IE R++A ++ E+ I+AF +G Sbjct: 706 --------------GRQVRKAFVPRDENHTLLAADYSQIELRIIAALSEEENMIQAFTDG 751 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 EDI+ +T AK FN P+++V++EQR+ K + + Y G + + Sbjct: 752 EDIHASTAAKVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTDLSRGEAKELIDN 811 Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500 + ++ + + ++ AV + G Sbjct: 812 YYKSYPKLRNYMSELVDFARENGYVKTVLDRRRYLNGINSSNGVVRGAAERNAVNAPIQG 871 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 +A +++K A + + E + + V +VP + + K + Sbjct: 872 SAADIIKIAMINIFEKL--------ENSDYKTKMLLQVHDELVFDVPNIELDDIKNLIKT 923 Query: 561 VLPSSRRLVYS 571 + S+ ++ Sbjct: 924 EMESAFKMAVP 934 Score = 38.9 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 20/106 (18%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDIL 610 R V VL R L G S R +Q + DI+ Sbjct: 829 FARENGYVKTVLDRRRYLN-----GINSSNGVVRGAAERNAVNAP------IQGSAADII 877 Query: 611 CEGMKNA----TKNGYDI--VLTVHDEIVSETPDTPYFSVGTLCSL 650 M N + Y +L VHDE+V + P + + +L Sbjct: 878 KIAMINIFEKLENSDYKTKMLLQVHDELVFDVP---NIELDDIKNL 920 >gi|126698722|ref|YP_001087619.1| DNA polymerase I [Clostridium difficile 630] gi|255100142|ref|ZP_05329119.1| DNA polymerase I [Clostridium difficile QCD-63q42] gi|115250159|emb|CAJ67980.1| DNA polymerase I (POLI) [Clostridium difficile] Length = 882 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 88/539 (16%), Positives = 184/539 (34%), Gaps = 93/539 (17%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 + D E + D E S + S + + +N + I K +I + Sbjct: 343 SVDGEKIYYVDSNEVSKLDSIF----SNNEIKKYGYNLKDDYISLK---PYNINLENMYF 395 Query: 96 TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 +A +S + +A+ + K +E + S Y+ Sbjct: 396 DITIAEYLIDSTSSTSYDCSAIAMKYLSKKVKSKE------ELLGKGVKSKNYEDLEFED 449 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLV 206 + + ++ E + L+ +S E L + + G ++D ++ Sbjct: 450 LAEYMGQIICTVKETVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +L + L+++I +L+ + L + LF + ++ ++ + Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTK--TGYSTN 564 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRW 320 + +L + + I+KLN+ L ++ + R+ + + TGR Sbjct: 565 ADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFN-QTITTTGRI 623 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R IA + KLV AD Sbjct: 624 SSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVDAD 659 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ V+ E R K + + Sbjct: 660 YSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGII 719 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G A ++ + F D Sbjct: 720 YGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYI 779 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + +S + +++ FA+ + G+A +++K A H+ +LQ+ +L Sbjct: 780 PEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQVHDEL 838 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 12/201 (5%) Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 Q + + S E+ +A HH + + + EL A +A + G Sbjct: 659 DYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA-KAVNFG 717 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 ++ D + A+ + K + + + Y+ + Sbjct: 718 IIYGKSDFGLADDLNIP---VPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774 Query: 577 CSYLNTATSQLMRERTYGGK-LTENI-VQAISRDILCEGMKNATKNGY------DIVLTV 628 GK N +Q + DI+ M N K ++L V Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834 Query: 629 HDEIVSETPDTPYFSVGTLCS 649 HDE++ E D V + Sbjct: 835 HDELIVEAIDDEIDIVKKIVK 855 >gi|210077501|gb|ACJ07015.1| PolI [Thermus sp. YSP2A.A1] Length = 832 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 91/491 (18%), Positives = 160/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + R+ + T + Sbjct: 354 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTP-EGVARRYGGEWTEEAGERATLSE-- 410 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 411 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 463 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 464 AEEIARLEAEVFRLAGHSF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 522 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR S Sbjct: 523 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLSSSDPNL 581 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 582 QNIPVRT------------------------PLGQRIRRAFIAEEGWLLVALDYSQIELR 617 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 618 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 677 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + + ++ Q+ + + E Sbjct: 678 LSQELAIPYEEAQAFIGRYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 737 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 738 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 797 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 798 AVARLAKEVME 808 Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 646 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIGRYFQSFPKVRA 705 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 765 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 766 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 807 >gi|159896602|ref|YP_001542849.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] gi|159889641|gb|ABX02721.1| DNA polymerase I [Herpetosiphon aurantiacus ATCC 23779] Length = 953 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 138/705 (19%), Positives = 236/705 (33%), Gaps = 184/705 (26%) Query: 2 SKLFIDIET-----RSPQPLPKVGVWAYAEQAVITL-----CAYAWDDEPVKLWDRTEQS 51 +L D+ET SP P VG I L C + Sbjct: 353 ERLIFDVETNSLNLFSPVPAKVVG---------IALTHTAGCGWYIPLG------HRSGQ 397 Query: 52 AMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 +P ++++ L+ D VAHN F+ +G+D+P + T++ A G Sbjct: 398 QLPIAEVVAALQPLFSDPQKAVVAHNGKFDMSALS-LIGLDVPHLSF-DTAIAAALLGKR 455 Query: 107 SSLKNACLA--LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 SLK+ A + + +M + LI K I + Y Sbjct: 456 QSLKDLAFAELRDADDRPIEMTRIETLIGT-GKKQITMDQVAIEQVT---------PYAS 505 Query: 165 RDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 DV+ T L +P E L + + G +D +++ +++ Sbjct: 506 ADVDMTARLLALFMPQLGAIPAVREVFEQIEMPLSPVLMRMEACGIGLDRAQLVQQGQVL 565 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------------- 258 Q +++++ I + + + L LF+ + ++ Sbjct: 566 GQSLREIEQHIADFVGEPL-NINSRFDLNDLLFIRLKLPTANLKRLAGTTRSGGAVYSVN 624 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASR 316 TL+ + +H +A +IL S ++ L E ++ GR+ + GA Sbjct: 625 AETLEDLQTHDQSGIVA--MILRYRRLSKLKSTYVDALIELINQQTGRVHTQYRQIGA-E 681 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + +R +A G L Sbjct: 682 TGRLSSDSPNLQNIPVRS------------------------EEGREIRRAFVARPGHVL 717 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE RVLA I + ++ F G+DI+ T A+ F+ P+D+VSK QR I K+ Sbjct: 718 MTADYSQIELRVLAHITADPALVEVFKTGQDIHAATAARLFDIPMDEVSKNQRRIAKMTV 777 Query: 437 LALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKD 496 + Y + +A+ L + Q + QYP +K Sbjct: 778 FGIIYGISS---FGLAARTALSRTEAQQMINGLFA----------------QYP--GLKS 816 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + T + + G + +++L Q+GG RR A Sbjct: 817 YIERTLERVKAVGYVETLFGRRRYFREL--------QDGGVTGPRRSAF----------- 857 Query: 557 DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKN 616 RE T G +Q + D++ M Sbjct: 858 -------------------------------EREATNAG------IQGTAADLIKLAMIR 880 Query: 617 ATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654 + GY ++L VHDE+V E P+ +V L C MT+ Sbjct: 881 LEQALIAGGYQAKMLLQVHDELVLEVPEDERDAVAQLVCDTMTQV 925 >gi|87308014|ref|ZP_01090156.1| DNA polymerase I [Blastopirellula marina DSM 3645] gi|87289096|gb|EAQ80988.1| DNA polymerase I [Blastopirellula marina DSM 3645] Length = 880 Score = 245 bits (626), Expect = 1e-62, Method: Composition-based stats. Identities = 103/624 (16%), Positives = 202/624 (32%), Gaps = 112/624 (17%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD------------DEPVKLWDRTE 49 +L D ET S P +A+ I +++WD + VKL + Sbjct: 297 KRLSFDTETTSTNP-------RWADLVGI---SFSWDQGEGVYIPIRSPEGDVKL----D 342 Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPS 107 +S + L L + + V N ++ ++ + +G+++ + T V A Sbjct: 343 ESLVLEKLRPILENSAIEKVGQNLKYDLVVL-RGVGVNVRGASF-DTMV-AHYLLEAGAR 399 Query: 108 SLKNACLALNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 S L+L + +H T + GK I + +D Y + Sbjct: 400 SHGLDELSLRYLQHETVKISELIGTGKNQIR-MDQVPVDKVGYYAAEDADIPL--RLDPI 456 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 +EA L L +D E L + + G R+D++ + +L + + L+ Sbjct: 457 LSERIEAE-GLGDLL---TDVELPLIDVLVEMEFNGIRVDVERLNELSRQYGERMEVLER 512 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 +I +L + L LF + ++ ++ T +L I+ Sbjct: 513 EIYQLAGRDF-NINSPKQLGTVLFDELNLPVIKKTKTGPSTDAEVLEQLAKQHDMPAKIV 571 Query: 280 NRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + ++ L + R+ + A+ TGR S QN+P + Sbjct: 572 QFRQYAKLKGTYVDALPVLICSKTDRVHTSFNQVVAA-TGRLSSNDPNLQNIPIRT---- 626 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 S +RS I KL+ AD + IE RVLA +G+ Sbjct: 627 --------------------QESREIRSAFIPGTPDWKLLCADYSQIELRVLAHFSGDPA 666 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++++ EDI+ ++ + P+D+V+ R K + + Y G AK Sbjct: 667 LMESYQKNEDIHARVASEVYGVPLDQVTSTHRRSAKAINFGVVYGQSPFGLAKSLDIDKD 726 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------------------ 489 + + + + + Sbjct: 727 EAYGFIDAYFKRYPGVDVLMEQILVDCQRDGYVRTILGRRRAIDGVRTADKRDRLKRQLT 786 Query: 490 --PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 A+ + G+A +++K A L++ + L + + I V P Sbjct: 787 MPERTAINTVIQGSAADIIKLAM-------LRVHRRLEKE-GSPAKLLLQIHDELVFETP 838 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYS 571 + + + V + S+R L Sbjct: 839 PEYLEQLAQLVREEMESARNLAIP 862 Score = 41.3 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 598 TENIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS 649 ++Q + DI+ M + ++L +HDE+V ETP + L Sbjct: 793 INTVIQGSAADIIKLAMLRVHRRLEKEGSPAKLLLQIHDELVFETPPEYLEQLAQLVR 850 >gi|228473427|ref|ZP_04058180.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] gi|228275034|gb|EEK13837.1| DNA polymerase type I [Capnocytophaga gingivalis ATCC 33624] Length = 931 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 95/538 (17%), Positives = 176/538 (32%), Gaps = 93/538 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNACLA 115 L + E ++ + N ++ + DI + + +++A LA Sbjct: 407 LKPFFEAENILKIGQNLKYDLKILANY---DIEVRGQLFDTMIAHYLLNPDMRHNMDLLA 463 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + E LI + KG + +L EY D + T +L Sbjct: 464 EAYLSYAPVAIE--TLIGKKGKGQLSMCSV---------PAELQKEYAVEDTDVTLQLKH 512 Query: 176 RLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +PL + E L + + G +D + +L + I + L I Sbjct: 513 TFLPLLEKDKMTPLFTEVEAPLVRVLAQMEYEGIAVDTAFLSQLSKEINTDLIALQTAIF 572 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + S L LF + T + S +++LA + Sbjct: 573 EQAGESFNLS-SPKQLGDILFEKLKLLSKPKKTKTGQYATSEEVLSELASQHPIVANVLE 631 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 A+ KL + L V+ GR+ T + TGR S QN+P + Sbjct: 632 FRALQKLQSTYTDALPREVNPRTGRIHTTF-MQAVTATGRLSSNQPNLQNIPIRT----- 685 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + L+ AD + IE R++A ++ E Sbjct: 686 -------------------PRGSQIRKAFVPRDENYTLLSADYSQIELRIIAALSEETHM 726 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+AF +G+DI+ +T AK F P++ V+KEQR+ K + + Y G ++ S Sbjct: 727 IEAFLDGQDIHRSTAAKVFGVPLEAVTKEQRSHAKTVNFGIIYGVSAIGLSQQTSLSRSQ 786 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + Q T+ + S + ++ A Sbjct: 787 SKELIDTYYQTYPKLKTYIEQQIFFAREHGYVQTLLGRRRYLPDIHSRNQVVRGAAERNA 846 Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 V + G+A +++K A + + +LQ+ +L E + R Sbjct: 847 VNAPIQGSAADIIKIAMVRIAERLEKEKLATRMLLQVHDELLFDVPKRELEVVTPLIR 904 >gi|258406522|ref|YP_003199264.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] gi|257798749|gb|ACV69686.1| DNA polymerase I [Desulfohalobium retbaense DSM 5692] Length = 845 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 99/478 (20%), Positives = 161/478 (33%), Gaps = 80/478 (16%) Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA----LNFSEHLTKMEEGKALIARFCK 137 K D + W+ A LP SLK+ +A +L A Sbjct: 339 KEYRPDWDIEHWVDHLSRAERVYLP-SLKDLLVADSAWEGLPYARCFD---LSLGAYLLD 394 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-------LIPLSDGERDLWLL 190 S +D R H + + + T + +R L + D E L + Sbjct: 395 PEQRSYSWDKIRQRHQNQLETHPDNNALSIMETGRILRRELANSELLSLMQDIELPLVGV 454 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + RG IDL+ + + + +E L +I L + R + + LF Sbjct: 455 LVRMEKRGLAIDLEAFRRFLDEVQEELDGLTHEIYDLAGQEF-NLRSSQQMAQVLFGDLE 513 Query: 251 IDLVDMSEGTLKSILS---------HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 + + G + S S H I ++ + L +L S+ L L + V Sbjct: 514 LPTGRKTPGGVPSTSSQVLEGLRNVHPIIPKILRFRTLEKLRSTY-----LEPLPQKVDD 568 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 RL A+ TGR S QN+P + G Sbjct: 569 TSRLHTHFNQL-ATATGRLSSSGPNLQNIPIR------------------------GEFG 603 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R C +A G +LV AD + IE RVLA ++ + ++AF GEDI+ T A + Sbjct: 604 PRMRQCFVAPEGSRLVAADYSQIELRVLAHLSQDPTLLEAFTQGEDIHSRTAAVIMDIAD 663 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTF-EDWE 476 + V E R K + L Y G + + +Q++ ++ S F E E Sbjct: 664 EHVDSEARRQAKTINFGLLYGMGPQKLSRELGISLNEAKTFIQRYFDRLQGVSAFYERIE 723 Query: 477 QAESHHLWM--------------------QDQYPEFAVKDKLIGTACELVKKAWRAKH 514 A H ++ Q AV + G+A +++K A Sbjct: 724 DAAKQHGYVTTWAGRRRLLPDINSRNANLAQQARRMAVNTVVQGSAADIIKMAMIEAD 781 Score = 50.9 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 9/76 (11%) Query: 598 TENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650 +VQ + DI+ M G + L VHDE++ E P + L ++ Sbjct: 761 VNTVVQGSAADIIKMAMIEADGDTELADAGARLTLQVHDELLLEVPREAAETAGKRLAAI 820 Query: 651 MTKNPSWAKGLPLKAE 666 M +PL + Sbjct: 821 MASVAD--MDVPLAVD 834 >gi|85713433|ref|ZP_01044423.1| DNA polymerase I [Nitrobacter sp. Nb-311A] gi|85699337|gb|EAQ37204.1| DNA polymerase I [Nitrobacter sp. Nb-311A] Length = 1020 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 91/490 (18%), Positives = 167/490 (34%), Gaps = 71/490 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI--CTSVLARTNGLP--SSLKNA 112 L L + + N F +L + GI + + + + L G +SL Sbjct: 494 LKPILESGGHLKIGLNIKFSAVLLAQH-GIVMQNHDDVELISYTLDAGRGSHDLASLAKR 552 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATR 171 L H G+ +A + Y A+ ++ WQ+ E Sbjct: 553 WLGHTTLSHGELTGSGRNRLAVDQVAIDRATAYAAEYADMTLRLWQVLKPRLV--AERMN 610 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +++ L ER + + RG ID ++ +L +AQ +L+ +I +L Sbjct: 611 AVYETL------ERPMTATLARMERRGITIDRQVLSRLSGELAQTAARLEAEIQQLAGEP 664 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAIL 290 I + + +F G+ ++ T S + +LA+ R + Sbjct: 665 I-NVGSPKQIGDIMFGKMGLPGGSKTK-TGAWSTSAQVLDELAEQGHDFPRKILDWRQVS 722 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L E V+ R T A+ TGR S QN+P Sbjct: 723 KLKSTYTDALPEYVNPQTRRVHTTYALAATTTGRLSSNEPNLQNIP-------------- 768 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R IA+ G +LV AD + IE R+LA IA +AF +G Sbjct: 769 ----------VRNEEGRKIRRAFIAAPGHRLVSADYSQIELRLLAEIADIPVLKQAFRDG 818 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T ++ F P+ + E R K + + Y G A +++ Sbjct: 819 LDIHAMTASEMFGVPVQGMPGEIRRRAKAINFGIIYGISAFGLANQLGIPREEAAAYIKK 878 Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500 + + + D + ++ + + A+ +L G Sbjct: 879 YFERFPGIRAYMDATRDFCREHGYVTTLFGRKCHYPDIKAPNPSHRAFNERAAINARLQG 938 Query: 501 TACELVKKAW 510 +A +++++A Sbjct: 939 SAADIIRRAM 948 Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Query: 603 QAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNP 655 Q + DI+ M ++L VHDE++ E PD ++ + +M P Sbjct: 937 QGSAADIIRRAMVRMDDALAAKKLSARMLLQVHDELIFEVPDEEVAATLPVVQHVMQDAP 996 >gi|239828008|ref|YP_002950632.1| DNA polymerase I [Geobacillus sp. WCH70] gi|239808301|gb|ACS25366.1| DNA polymerase I [Geobacillus sp. WCH70] Length = 878 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 82/510 (16%), Positives = 174/510 (34%), Gaps = 62/510 (12%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I A A + + RT+ + S Q+L DE+ + I+ K GI + Sbjct: 334 ILGFAIANEHG--NFFIRTDTALSSSLFTQWLEDESKKKSVFDGK-RAIVSLKWQGIQLR 390 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 ++ + + S ++ + + ++ A + KG+ P + Sbjct: 391 GVQF-DLLIASYLLNPSQSTEDVASI----AKTKQYTDVQSDEAIYGKGAKQKIPDEPVL 445 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A H+ ++D + ++ +D E L + + G +ID+ + ++ Sbjct: 446 AEHLVRKAAAIRALEQDFICDLQENEQYSLFTDLELPLSSILAEMEFTGVKIDVKRLKEM 505 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 E + ++ K+++++I +L + L + LF + ++ ++ T +L Sbjct: 506 GEELTEQLKEIEQEIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLE 564 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + IL+ + L + V D T+ ++TGR S Sbjct: 565 KLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHHDTNKVHTIFNQALTQTGRLSSTEPN 624 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385 QN+P + +R + S + AD + IE Sbjct: 625 LQNIPIR------------------------LEEGRKIRQAFVPSEPDWVIFSADYSQIE 660 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA IA ++ I AF + DI+ T F+ D+V+ R K + + Y Sbjct: 661 LRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVNEDEVTPNMRRQAKAVNFGIVYGISD 720 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAES 480 G ++ ++++ + + S Sbjct: 721 YGLSQNLNITRKEASEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITS 780 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + ++ A+ + G+A +++KKA Sbjct: 781 RNFNLRSFAERTAMNTPIQGSAADIIKKAM 810 >gi|166364552|ref|YP_001656825.1| DNA polymerase I [Microcystis aeruginosa NIES-843] gi|166086925|dbj|BAG01633.1| DNA polymerase I [Microcystis aeruginosa NIES-843] Length = 956 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 109/631 (17%), Positives = 206/631 (32%), Gaps = 126/631 (19%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + L L + V N+ F+ +F I K + +++A Sbjct: 409 DNLNLEIVLEKLRPILASDDYPKVFQNAKFDIDVFYHQ---GITVKGLVFDTMVASYVLH 465 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 P L N + + G ++ G YC Sbjct: 466 PE------LTHNLEDLCDRYLTGITSLSYKSLGIPAGKTIADLDIPTT------ANYCGL 513 Query: 166 DVEATRELFKRL-------IPL----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D AT L ++L PL S+ E L ++ + + G +I+++ + + + Sbjct: 514 DAYATYLLREKLQAELTKIPPLYQLFSEIESPLVMVLWQMENYGIKININYLKNFSQQLE 573 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 ++ ++++ + S L LF ++ + S + +L Sbjct: 574 RDLAYIEKNAYESIGETFNLS-SPKQLSEILFDRLALNRKKSRKTKTGYSTDQSVLEKLQ 632 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 D L + KL + L + R+ + TGR S Q Sbjct: 633 GDHPLVDYILEHRTLSKLKSTYVDALPKLAEPKTARVHTDFN-QTITSTGRLSSSNPNLQ 691 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + S +R I NG LV AD + IE R+ Sbjct: 692 NIPIRS------------------------EFSRRIRQAFIPENGYLLVSADYSQIELRI 727 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA ++ E ++A+ + +D++ T F+ +++ E+R++GK + + Y GA+ Sbjct: 728 LAHLSQEPVLLEAYRSNQDVHKVTAQLLFDK--REITPEERSLGKTINFGVIYGMGAQ-- 783 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 A L ++Q + ++ + + Q + + Q + ++G Sbjct: 784 -KFARESKLTVEQGRKFIE--KYHQRYAQVFEYLENSKKQAITQGYVETILGR------- 833 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 RR N +++R R L Sbjct: 834 --------------------------------RRYFNFDNPLLKR-----------LRGL 850 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GY--DI 624 D+ D LN +QL+R +Q S DI+ M + Y + Sbjct: 851 SLHDIDLDSLKLNNEEAQLLRSAANAP------IQGSSADIIKVAMVKLAEVLQNYRARL 904 Query: 625 VLTVHDEIVSETPDTPYFSVG-TLCSLMTKN 654 +L VHDE+V E P + S+ + + M + Sbjct: 905 LLQVHDELVLEVPREEWPSLESKIKTTMEEA 935 >gi|56551123|ref|YP_161962.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] gi|56542697|gb|AAV88851.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ZM4] Length = 921 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 94/563 (16%), Positives = 187/563 (33%), Gaps = 89/563 (15%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D +++ + N ++ I+ + GI + G + L F Sbjct: 403 EDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQ 461 Query: 122 LTKMEE----GKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKR 176 + GK+ I + Y A+ + W L D +++ Sbjct: 462 PISFKSVCGTGKSAITFNHVPIPAATRYAAEDADITFRLWALLKPRLSSDGAT--RIYE- 518 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRS 234 + +R L + + G +D + L A + +L+E+I L +I S Sbjct: 519 -----EVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYVLAGCRFLISS 573 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSA 288 +Q L LF G+ S+ + + + + +LA + IL S Sbjct: 574 PKQ---LGEVLFGTMGLAGGKKSKSG-QYSTNVTELERLAAEGEAIASKILEWRQLSKLK 629 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L V+ GR+ + GA +TGR S QN+P + Sbjct: 630 STYSDALIGKVNPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIPIRT------------- 675 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R+ IA G L+ AD + IE R+ A +A E ++AF ED Sbjct: 676 -----------EIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFREKED 724 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T + F V +E RA K + A+ Y G A + + ++ Sbjct: 725 IHALTAKQLFGH----VDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYF 780 Query: 464 QNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + D +S + + A+ + G + Sbjct: 781 ERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMS 840 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIV 561 +++K+A +++ L + V+ + + VP + + K + ++ Sbjct: 841 ADIIKRAM-------VRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQVM 893 Query: 562 LPSSRRLVYSDVKGDCSYLNTAT 584 + ++ +V V + + Sbjct: 894 MEAALPIVQLSVDLEVEIGTGTS 916 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 15/117 (12%) Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDC-SYLNTAT-------SQLMRERTYGGKLTEN 600 ++ R +R I R L + + G + T ++ + + Sbjct: 775 MIDRYFERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINA 834 Query: 601 IVQAISRDILCEGMKNAT----KNGYDIV---LTVHDEIVSETPDTPYFSVGTLCSL 650 +Q +S DI+ M K G V L VHDE++ E P+ + Sbjct: 835 PIQGMSADIIKRAMVRMEPALAKAGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQ 891 >gi|294013310|ref|YP_003546770.1| DNA polymerase I [Sphingobium japonicum UT26S] gi|292676640|dbj|BAI98158.1| DNA polymerase I [Sphingobium japonicum UT26S] Length = 928 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 90/566 (15%), Positives = 189/566 (33%), Gaps = 88/566 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114 L L D++V+ + N ++ + ++ GI+I G L + Sbjct: 403 LKPLLEDDSVLKIGQNLKYDITVLRRH-GIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAA 461 Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169 ++ + ++ G++ I+ + Y A+ ++ W+LF E Sbjct: 462 RVHLNHVCISFKDVCGTGRSQISFAEVPLDKATEYAAEDADVTLRLWRLFKSRIAN--EG 519 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +++ +R L + + G ++D + + +L L+ +I L Sbjct: 520 ATRVYEL------VDRPLVGVIAKMEHEGIKVDREALSRLSAEFTAGIAALEGEIHALAG 573 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLA 283 + T L LF G + + + QL +L+ Sbjct: 574 QPF-AIGSTQQLGAILFDKMGYKGGRKGKSG-AYSTDVTILEQLKAQGAEIAGKVLDWRQ 631 Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S + L ++ D GR+ + GA +TGR S QN+P + Sbjct: 632 LSKLKSTYTDALQAQINKDSGRVHTSYSLSGA-QTGRLSSTDPNLQNIPIRT-------- 682 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G ++ AD + IE R+ A +A +AF Sbjct: 683 ----------------EVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAF 726 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 ANGEDI+ T + F +V+++ R K + A+ Y G A + A Sbjct: 727 ANGEDIHAATAQQLFG----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQDM 782 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 + ++ + S + + + ++ + A+ Sbjct: 783 ISRYYERFPGISLYITDTIEKARSRGYTETLFGRKTWFPRIKAPVQHERQGAERAAINAP 842 Query: 498 LIGTACELVKKAWRAKHQ-------GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + GT+ +++K+A +++ + + + EG A A + R++ Sbjct: 843 IQGTSADIIKRAMARMGPALAAEGLHRVKMLLQVHDELVFELPEGDVEHA--GAVIRRVM 900 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGD 576 + V + +P + + G Sbjct: 901 EGAAEPIVKLSVPLGVEIGHGSSWGA 926 >gi|257066818|ref|YP_003153074.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] gi|256798698|gb|ACV29353.1| DNA polymerase I [Anaerococcus prevotii DSM 20548] Length = 879 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 109/566 (19%), Positives = 200/566 (35%), Gaps = 80/566 (14%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + I D P + D S S + DE ++ + + E ++ LGI Sbjct: 331 HSEIYKLGIKTTDTPTYIID--PDSDFVSKFKEIFEDEEIVKNSFDIK-EDVVLLDKLGI 387 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ +L PS + L E K+ + KG + Y Sbjct: 388 NLKLP--YDDMMLMHYLIDPS---RSSYDLKVLSQSYLDYEVKSPVDLLGKG-KKALKYQ 441 Query: 147 CTRANHVQAWQLFGEYCKRD----VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + + + G D +E + + L + E L + + G+ D Sbjct: 442 DLDFDELGNYLASGINAIEDSKEILEDKLDEYHMLDLYKEIEIKLSKVLADMEIVGFVTD 501 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ L+E I ++ K+ E+I +L + T L LF + ++ ++ Sbjct: 502 KKVLEDLKENIDKDIDKITEEIYELAGSEF-NINSTKQLGEVLFKDLDLPVIKKTKTGFS 560 Query: 260 TLKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 T +L H I ++ + L +L S+ + L +A+ DGR+R T + A Sbjct: 561 TNAQVLEKLRDKHQIIPKIERYRELFKLRSTY-----IEGLEKAIDEDGRIRSTFRQNIA 615 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QNLP + +R A GK Sbjct: 616 A-TGRLSSQDPNLQNLPIKT------------------------DEGRLIRKAFRAEEGK 650 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + IE R+LA ++G+ I AF G DI+ T +K F+T +DKV+K QR+ K Sbjct: 651 ILIDADYSQIELRILASLSGDRHMIDAFKEGVDIHTKTASKVFHTDLDKVTKRQRSEAKA 710 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474 + + Y G ++ + + + S + D Sbjct: 711 VNFGIIYGISDYGLSQNLNIPRKEAKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLF 770 Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD---LTE 526 + S + ++ A+ + GTA +++K A + + + D + + Sbjct: 771 KRRRYVPEINSRNFNVRSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLDAKIVLQ 830 Query: 527 GFACVVQEGGSISARRVANVPRLVMR 552 ++ E S + R M Sbjct: 831 IHDEIILEADESSKDEAIKILRESME 856 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 7/64 (10%) Query: 591 RTYGGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M KN K G D IVL +HDEI+ E ++ Sbjct: 787 RSFGQRVALNTPIQGTAADIIKIAMIETDKNLKKAGLDAKIVLQIHDEIILEADESSKDE 846 Query: 644 VGTL 647 + Sbjct: 847 AIKI 850 >gi|307150628|ref|YP_003886012.1| DNA polymerase I [Cyanothece sp. PCC 7822] gi|306980856|gb|ADN12737.1| DNA polymerase I [Cyanothece sp. PCC 7822] Length = 966 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 120/667 (17%), Positives = 219/667 (32%), Gaps = 127/667 (19%) Query: 7 DIETRSPQPL--PKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--TEQSAMPS-DLLQYL 61 D ET S P+ VG+ C + V TE +P ++L L Sbjct: 381 DTETTSLDPIEATLVGIG----------CCWGHQSTDVAYIPLNHTEGEQLPQTEVLAAL 430 Query: 62 RD----ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 R + N+ F+RI+ GI + + T + + S K + L Sbjct: 431 RSILESDQYPKAFQNTKFDRIVLLHQ-GIQLAGVVF-DTMLASYVLRPEDSHKLSDLCHR 488 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE--LFK 175 + E++ + I + + + + A+ F K E + L+ Sbjct: 489 YLENIKSLNYKDLEIPK-TQTIANLDISRVAHYCGMDAYATFKLVPKLLAELEKAPDLYN 547 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 LI + E+ L + + + G RID + + + Q+ ++ + + Sbjct: 548 LLIKV---EQPLEPVLAEMENTGVRIDSQYLKAFSQKLEQDLAIFEKKAYEAAGESF-NL 603 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL-----AKDLILNRLASSGSAIL 290 L LF + + H+ + +L D IL + Sbjct: 604 GSPKQLSYILFDKLKLSKSKSRKIKTGYSTDHATLEKLQGEDRIIDYILEHRTLAKLKST 663 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L V GR+ + TGR S QN+P + Sbjct: 664 YVDALPALVHPKTGRVHTDFN-QTVTTTGRLSSSNPNLQNIPIKT--------------- 707 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 S +R I G LV AD + IE R+LA + E ++A+ N +D++ Sbjct: 708 ---------EFSRQIRQAFIPEEGWLLVSADYSQIELRILAHLTQEPLLVEAYQNYQDVH 758 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKST 469 T F+ ++ E+R+IGK + + Y GA+ F A GL +Q+ + + Sbjct: 759 RVTAQLLFDKA--NITSEERSIGKTINFGVIYGMGAQRF---ARAFGLSVQEGKEFI--- 810 Query: 470 STFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 E + Q + V + L E + K + G + ++ + Sbjct: 811 ---EKYHQKYAR------------VFEYLERVKKEAIAKGFVTTILGRRRYFEFFDDKL- 854 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 +R K + ++ LN + +QL+R Sbjct: 855 -------------------NRLRGEKPE--------------NLDLKKLELNFSDAQLLR 881 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG 645 +Q S DI+ M + ++L VHDE+V E P + + Sbjct: 882 AAANAP------IQGSSADIIKIAMVQLQEILQQYQARLLLQVHDELVFEVPPHEWEELE 935 Query: 646 -TLCSLM 651 + + M Sbjct: 936 VKIKNTM 942 >gi|255655127|ref|ZP_05400536.1| DNA polymerase I [Clostridium difficile QCD-23m63] gi|296451114|ref|ZP_06892855.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296880534|ref|ZP_06904496.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] gi|296259935|gb|EFH06789.1| DNA-directed DNA polymerase I [Clostridium difficile NAP08] gi|296428488|gb|EFH14373.1| DNA-directed DNA polymerase I [Clostridium difficile NAP07] Length = 882 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 87/539 (16%), Positives = 184/539 (34%), Gaps = 93/539 (17%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 + D E + D E S + S + + +N + I K +I + Sbjct: 343 SVDGEKIYYVDSNEVSKLDSIF----SNNEIKKYGYNLKDDYISLK---PYNINLENMYF 395 Query: 96 TSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 ++ +S + +A+ + K +E + S Y+ Sbjct: 396 DITISEYLIDSTSSTSYDCSAIAMKYLSKKVKSKE------ELLGKGVKSKNYEDLEFED 449 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGYRIDLDLV 206 + + ++ E + L+ +S E L + + G ++D ++ Sbjct: 450 LAEYMGQIICTVKETVPMME--RSLMDMSMDGLFYHVEMPLVEVLGHMEYEGIKVDKSIL 507 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +L + L+++I +L+ + L + LF + ++ ++ + Sbjct: 508 DELSVEFKEIIATLEKEIYELSGEPF-NINSPKQLGVILFEKLELPIIKKTK--TGYSTN 564 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRW 320 + +L + + I+KLN+ L ++ + R+ + + TGR Sbjct: 565 ADVLEKLRDKHPIIDKITEYRQIVKLNSTYVEGLLNIINPESNRIHSSFN-QTITTTGRI 623 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P +R IA + KLV AD Sbjct: 624 SSTEPNLQNIP------------------------IKMEMGRKIRKVFIADDNCKLVDAD 659 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + +E RVLA ++ ++ I+AF + EDI+ T ++ FN P++ V+ E R K + + Sbjct: 660 YSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAAKAVNFGII 719 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G A ++ + F D Sbjct: 720 YGKSDFGLADDLNIPVPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILNRRRYI 779 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + +S + +++ FA+ + G+A +++K A H+ +LQ+ +L Sbjct: 780 PEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQVHDEL 838 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 59/201 (29%), Gaps = 12/201 (5%) Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 Q + + S E+ +A HH + + + EL A +A + G Sbjct: 659 DYSQVELRVLAHMSQDENMIEAFKHHEDIHTKTASQVFNVPMEDVTSELRGAA-KAVNFG 717 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 ++ D + A+ + K + + + Y+ + Sbjct: 718 IIYGKSDFGLADDLNIP---VPKAKEYIESYFAKYHKIKEFMDTTVEKASEDGYAVTILN 774 Query: 577 CSYLNTATSQLMRERTYGGK-LTENI-VQAISRDILCEGMKNATKNGY------DIVLTV 628 GK N +Q + DI+ M N K ++L V Sbjct: 775 RRRYIPEIKSSNFMERNRGKRFAMNAPIQGSAADIIKIAMINVHKKLEENNLKSKLILQV 834 Query: 629 HDEIVSETPDTPYFSVGTLCS 649 HDE++ E D V + Sbjct: 835 HDELIVEAIDDEIDIVKKIVK 855 >gi|222151604|ref|YP_002560760.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] gi|222120729|dbj|BAH18064.1| DNA polymerase I homolog [Macrococcus caseolyticus JCSC5402] Length = 875 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 94/560 (16%), Positives = 182/560 (32%), Gaps = 89/560 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPSSLKNAC 113 + L++E +++ ++LF + +DI K C LA L +LK Sbjct: 353 ESFINALQNEDTKKYVYDAKETKVLFSR---LDIDIKGIEHCVM-LASYL-LDPALKIID 407 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +A + E +I F KG+ P + LF V A E+ Sbjct: 408 VAQSAQMQGIYYVESDEMI--FGKGAKMHIP---------ERTNLFKHIASE-VNAIHEV 455 Query: 174 ----------FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 K+L L+ E L L+ + +G +++ + ++Q+ I +L Sbjct: 456 SALQIRKLNELKQLELLTALELPLSLVLADMEMQGIKVNRQTLQEMQQEIQSRLDELITR 515 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA------KDL 277 I + + L + LF +D + + + LA +D+ Sbjct: 516 IHEHAGSTF-NINSPKQLGVVLFEDLKLDSPKKKKTKTGYSTAVDVLESLAGKHPIIEDI 574 Query: 278 ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 +L R S + L + + D ++ A +TGR S QN+P Sbjct: 575 LLYR-TLSKLQSTYVEGLQKLIGDDDKIHTRFNQVIA-QTGRLSSIDPNLQNIP------ 626 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGED 396 +R + S ++ AD + IE RVLA I G+ Sbjct: 627 ------------------VRLDEGRKIRKAFVPSEPNSVIFAADYSQIELRVLAHITGDK 668 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 ++AF G DI+ T K FN ++V+ + R K + + Y G ++ Sbjct: 669 GMLEAFNQGIDIHTKTAMKVFNVEREEVTSDMRRQAKAVNFGIVYGISDYGLSQSLGITR 728 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 + + ++ + S + ++ Sbjct: 729 KDAQAFIDNYLESFPDVKAYMHDIIQEAKQQGYVTTLLNRRRYIPDITSRNFNLRGFAER 788 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A+ + G+A +++K A ++ V + D V + + + Sbjct: 789 TAMNTPIQGSAADIIKLAMVHYNEQVKET--DFKAKLLLQVHDELIFEVPKDELEAFSLF 846 Query: 552 RRHKRDVHIVLPSSRRLVYS 571 +H + + L + Y Sbjct: 847 VKHVMENALELKVPLEVEYD 866 >gi|302386264|ref|YP_003822086.1| DNA polymerase I [Clostridium saccharolyticum WM1] gi|302196892|gb|ADL04463.1| DNA polymerase I [Clostridium saccharolyticum WM1] Length = 850 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 72/368 (19%), Positives = 131/368 (35%), Gaps = 58/368 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + D G R++ L+ + + + +L++ I + T + L Sbjct: 452 EIEMPLTYSLYRMEDAGIRVERKLLKEYGDRLKVRIAELEQKIYEETGETF-NINSPKQL 510 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296 LF I ++ + + +LA D RL + KLN+ L+ Sbjct: 511 GEVLFDHMKIPGGKKTKTG--YSTAADVLEKLASDWPAVRLILDYRQLTKLNSTYADGLA 568 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + D R+ GT + TGR S QN+P Sbjct: 569 AYIGPDERIHGTFN-QTITATGRISSTEPNLQNIP------------------------V 603 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G + AD + IE RVLA ++G+ I A+ EDI+ T ++ Sbjct: 604 RMELGREIRKVFVPQEGCVFIDADYSQIELRVLAHMSGDQRLIGAYKQAEDIHAITASQV 663 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ P+ +V+ QR K + + Y G ++ ++++ + TF Sbjct: 664 FHVPLHEVTPLQRRNAKAVNFGIVYGISSFGLSEGLSITRKEASEYIEKYFETYPGVKTF 723 Query: 473 EDWEQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAWR 511 D AE+ L +MQ + A+ + GTA +++K A Sbjct: 724 LDGLVAEAKELGYAASMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMI 783 Query: 512 AKHQGVLQ 519 + + Sbjct: 784 RVDGALRK 791 >gi|210631309|ref|ZP_03296852.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] gi|210160076|gb|EEA91047.1| hypothetical protein COLSTE_00737 [Collinsella stercoris DSM 13279] Length = 932 Score = 245 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 135/394 (34%), Gaps = 66/394 (16%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + ++ G +D + E ++ + +L + I +L G + L Sbjct: 533 IEMPLVRVLASMERAGMYVDPARLAAQSEELSGQIAELSDRIRELAGGEEFNLSSPMQLS 592 Query: 243 MYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILK-----LNTLS 296 LF G+ + + + + LAKD + RL K L+TL Sbjct: 593 RVLFDKLGLPTAGLKKTQRGYYSTNAKVLEDLAKDYEIVRLILEYRERTKIKSTYLDTLG 652 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 +DGR+ T + TGR S QN+P + Sbjct: 653 ALRETDGRVHTTYN-QTITATGRLSSSNPNLQNIPTRS---------------------- 689 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 V+ G V D + IE R+LA ++G++ + AF GED + T A+ Sbjct: 690 --ELGHAVKKAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVGAFNEGEDFHAETAARV 747 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P+++V+ + R+ K + + Y G ++ + + + + T+ Sbjct: 748 FGVPVEEVTPQLRSRAKAVNFGIVYGQQAYGLSQALDIPMAEAREMIDAYFRAYPGVRTY 807 Query: 473 EDWEQAESHHLWMQDQ-------------------YPEFAVKDKLIGTACELVKKAWRA- 512 D A + + A+ + G+A +++K A Sbjct: 808 LDETVAFAKQTGYAETMYGRRRPIPELRVPAQRMFGERTAMNHPMQGSAADIIKIAMVRV 867 Query: 513 ---------KHQGVLQLWKDLTEGFACVVQEGGS 537 + +LQ+ +L F C V E + Sbjct: 868 AERLRTEGFAAKMILQVHDELD--FECPVGEVDA 899 >gi|172037170|ref|YP_001803671.1| DNA polymerase I [Cyanothece sp. ATCC 51142] gi|171698624|gb|ACB51605.1| DNA polymerase I [Cyanothece sp. ATCC 51142] Length = 970 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 108/625 (17%), Positives = 201/625 (32%), Gaps = 126/625 (20%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 ++ + L L V N+ F+R++FK I + ++LA P Sbjct: 426 KKEQVLDSLRTILESSDYPKVFQNTKFDRLIFKHQ---AINLDGVVFDTMLASYVLHPE- 481 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + SE + EG C+ + + ++ EYC D Sbjct: 482 -----KSHKLSELCEQYLEGIT-----CQNYDELGISKKQTIADLDIEKV-AEYCGMDAY 530 Query: 169 ATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L +P L + E+ L + + D G ID + + KL + + QE Sbjct: 531 GTFLLVEPLKNELQQVPTLEQLLLEVEQPLEAVLSIMEDTGILIDTEYLGKLSKELEQEL 590 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 L++ + + L LF ++ + H+ + +L D Sbjct: 591 SSLEKKAYDAAEEKF-NLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDH 649 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + + KL + L E V+ R+ + TGR S QN+P Sbjct: 650 PIIDYILEYRTLSKLKSTYIDALPELVNKKTKRIHTNFN-QSVTATGRLSSSNPNLQNIP 708 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + S +R I LV AD + IE R+LA Sbjct: 709 IRT------------------------EFSRQIRQAFIPQKDWLLVSADYSQIELRILAH 744 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ E + A+ N ED++ T F ++++ ++R +GK + + Y G++ Sbjct: 745 LSQESVLLNAYQNAEDVHTVTAKLLFEK--EEITPQERNLGKTINFGVIYGMGSQR---F 799 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 A G+ + + + + + + + M+ + ++G Sbjct: 800 AREAGVSATEGKEFI--NKYRQRYAKVFEYLENMKKEAIANGYVTTILGR---------- 847 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 R + R D + + + Y+ Sbjct: 848 ----------------------------RRYFNFFDDNLYRFRGHDPQTIDLNKLNINYN 879 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA-TKNGY---DIVLT 627 D SQL+R +Q S DI+ M Y +++L Sbjct: 880 D------------SQLLRAAANAP------IQGSSADIIKIAMVKIQEILNYYQANLLLQ 921 Query: 628 VHDEIVSETPDTPYFSVGT-LCSLM 651 VHDE+V E P+ + + + M Sbjct: 922 VHDELVFEIPEKEWEELNHKIKETM 946 >gi|38146981|gb|AAR11875.1| DNA polymerase I [Clostridium stercorarium] Length = 898 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 88/520 (16%), Positives = 171/520 (32%), Gaps = 79/520 (15%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVL--ARTNGLP 106 ++ + ++L + ++E + + HN F L K + ++ + L + NG P Sbjct: 369 ENLIATELKELWQNENIHKIGHNIKEFITWLLKHDVELNGLYFDTMIAEYLIDSIRNGYP 428 Query: 107 -SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCK 164 +SL + L + + +GK Y + W + + + Sbjct: 429 IASLSHKYLNRSVPSLDELLGKGKGAKKYSEIPPERLKDYSAYNVKAIFDIWPMQKKVLQ 488 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + +D E L + ++ G+++D + + E++ K L++ I Sbjct: 489 ENRQEEL--------FNDIELPLITVLASMEYHGFKVDAAKLHEYGEVLLSRIKDLEKVI 540 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 L + T L LF + +V ++ T +L I+ Sbjct: 541 YMLAGEEF-NINSTKQLGTILFEKLKLPVVKSTKTGYSTDVEVLEELYYKHDIIPCIIEY 599 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + ++ G++ + + TGR S QN+P + Sbjct: 600 RQLTKLYTTYAEGLEKVINPVTGKIHSSFN-QTVTATGRISSTEPNLQNIPVRH------ 652 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I S V AD + IE RVLA I G++ I Sbjct: 653 ------------------EMGREIRKAFIPSSENAVFVDADYSQIELRVLAHITGDEALI 694 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF GEDI+ T + F+ + V+ E R K + + Y G A+ Sbjct: 695 NAFVKGEDIHTATASLVFDVAPEDVTPELRRKAKAVNFGIVYGISDYGLARDLGITRKEA 754 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + T+ D + S + + A+ Sbjct: 755 KRYIDDYFAKYPKVKTYVDEIVRVGQEQGYVETLFHRRRYLPELASKNFHQRSFGKRVAM 814 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA +++K A K + +LQ+ +L Sbjct: 815 NTPIQGTAADIIKIAMVKVYKALKESGLKSRLILQVHDEL 854 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 11/115 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 V V + + YL S+ +R++G ++ N +Q + D Sbjct: 768 VKTYVDEIVRVGQEQGYVETLFHRR---RYLPELASKNFHQRSFGKRVAMNTPIQGTAAD 824 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 I+ M K ++L VHDE+V ET + +V L M + Sbjct: 825 IIKIAMVKVYKALKESGLKSRLILQVHDELVIETFEDELETVKELVKKCMEEAVE 879 >gi|15838881|ref|NP_299569.1| hypothetical protein XF2290 [Xylella fastidiosa 9a5c] gi|9107454|gb|AAF85089.1|AE004041_1 phage-related protein [Xylella fastidiosa 9a5c] Length = 312 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 108/254 (42%), Positives = 146/254 (57%), Gaps = 5/254 (1%) Query: 156 WQLFGEYCKRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 W F EY +RDV A R++ KRL + E LW LDQTINDRG ID DLV + Sbjct: 3 WAQFVEYARRDVAAMRDVVKRLPSHNYAGAELALWFLDQTINDRGVLIDTDLVQAAIGAV 62 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + ++ L + LT G ++++ Q AL +L G+ L DM + T+ + + + Sbjct: 63 ERAKQTLAQRTEALTGGAVQAATQRDALLQHLNTAHGVALPDMQQHTVARCVDDPALPET 122 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++L+ R +S ++ K L S DGRLRGTLQF GASRTGRW+G +FQP NLPR Sbjct: 123 VRELLSIRRQASSTSTAKYQALLHCTSPDGRLRGTLQFNGASRTGRWAGRLFQPHNLPRP 182 Query: 334 ERSEEILTQTIQALNRGE---TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 S+E++ I A+ G D + L S +RSC+IA KKLVVADL+ IE RVLA Sbjct: 183 TLSQEVIAVGIDAMKAGCVDLVFDDVMALTSSALRSCLIAPTHKKLVVADLSIIEGRVLA 242 Query: 391 WIAGEDWKIKAFAN 404 W+AGE K+ AF Sbjct: 243 WLAGETPKLHAFRE 256 >gi|317051804|ref|YP_004112920.1| DNA polymerase I [Desulfurispirillum indicum S5] gi|316946888|gb|ADU66364.1| DNA polymerase I [Desulfurispirillum indicum S5] Length = 881 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 102/595 (17%), Positives = 186/595 (31%), Gaps = 115/595 (19%) Query: 4 LFIDIETRSP----QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP----S 55 + ID ET S L + + EQA +A D MP Sbjct: 318 IAIDTETTSEHAVEADLVGISIAI-GEQAWYVPIDHAHTD---------THRNMPTADVQ 367 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNGLPSSLKNACL 114 L+ L ++ V N ++ I+ ++ D+ + +++A L Sbjct: 368 KLITALDRSDLLLVGQNIKYDLIVLQRH---DMALPQPRLFDTMIASYL-----LDANRR 419 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + + +IA S D + Y D T L+ Sbjct: 420 SHGLDQLAVEFL-SHEMIAFKDVVPKGSTFRDVDIPTAAR-------YAGEDAAITLALY 471 Query: 175 KRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 P + E L + + G +D +++ L E + +L+E I Sbjct: 472 NLFAPRIEQEYHELFHAIEMPLVRVLCHMEMLGIAVDREMLGNLHESFTRRLHELEEKIY 531 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + L LF GI V ++ S + LA + + + Sbjct: 532 ELAGEAF-NINSPKQLATLLFEKMGIPPVKKTK--TGYSTDVSVLEALAPQYEIANVLTQ 588 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL N LSE ++ GR+ + A+ TGR S QN+P + Sbjct: 589 YRMVSKLLSTYVNALSELINPWTGRIHTSFNQTVAN-TGRLSSSDPNLQNIPIRT----- 642 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR + + G V AD + IE R+ A ++G++ + Sbjct: 643 -------------------EEGREVRKAFVPAPGFCFVAADYSQIELRIAAHLSGDESML 683 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 K+FA +DI+ T F + R + K + + Y A + Sbjct: 684 KSFAEEKDIHAQTADAIFGSSE----PNYRRMAKAVNFGILYGISAFKLSRDLGMTPKEG 739 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAV 494 + + + D + A + + +++ AV Sbjct: 740 QALIDSYFLRYPGVKAYIDHQIAFAREHGYAQTLYGRRRYLPDINSRNRNIREAAERNAV 799 Query: 495 KDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISAR 541 + GT+ +++K A HQ +LQ+ +L E S + Sbjct: 800 NMPIQGTSADIIKIAMNRIHQQLAPYQARMLLQIHDELLFEVPFEQAEPFSAFLQ 854 >gi|323703153|ref|ZP_08114807.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] gi|323531930|gb|EGB21815.1| DNA polymerase I [Desulfotomaculum nigrificans DSM 574] Length = 882 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 84/509 (16%), Positives = 166/509 (32%), Gaps = 85/509 (16%) Query: 36 AWDDEPVKLWDRTEQSAMPS-DLLQYL-RDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 A ++ + L + P+ +LQ L + + H++ + GI++ S + Sbjct: 355 AVPEQDIYLLPLQDTDPYPALTVLQALCENSEIKKYFHDAKSALWMLHHH-GIELKSLAF 413 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 T V A P++ + L + ++ +A+ + Sbjct: 414 -DTMV-AAYLLNPTASGYDLIDLALEHLGIVL-------------PVNGEVSLAAKADAI 458 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 L GE K+ L + + E L + + G +D + ++ + Sbjct: 459 LK--LAGELVKK-----LHLQEEDRLYFEVELPLVQVLADMEMAGVTVDKQGLKEMSAEL 511 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + L I L + L LF + + ++ + +L Sbjct: 512 HDMIESLAHRIHTLAGEDF-NINSPKQLGHILFEKLKLPVYKKTK--TGYSTDAEVLEKL 568 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 A++ + L + KL + L+ V GRL T + TGR S Sbjct: 569 AEEHEIVALILEYRQLAKLKSTYTDGLAALVDPQTGRLHSTF-HQTVTATGRLSSAEPNL 627 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386 QN+P + S +R + G ++ AD + IE Sbjct: 628 QNIPIRLES------------------------GRRIRKVFVPRQKGNLILTADYSQIEL 663 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 RVLA ++ + ++AF G+DI+ T A+ F P+++V+ + R+ K + + Y Sbjct: 664 RVLAHMSQDPSFLEAFRQGQDIHTRTAAEVFGVPMEEVTPDMRSRAKAVNFGIVYGISDF 723 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------- 489 G A+ K + + + D E+ H Sbjct: 724 GLARDLKVSRREAKSYIDNYFARCPGVKDYIDRVIKEAKHTGYVTTLLNRRRYLPDLFSP 783 Query: 490 --------PEFAVKDKLIGTACELVKKAW 510 A+ + G+A +++K A Sbjct: 784 NYNARSFGERAAMNTPIQGSAADIIKLAM 812 Score = 45.9 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 14/82 (17%) Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 R++G + N +Q + DI+ M + +VL VHDE++ + P++ Sbjct: 788 RSFGERAAMNTPIQGSAADIIKLAMVRVARELRERNLQAKLVLQVHDELIFDVPESEVNE 847 Query: 644 VGTLC-SLMTKNPSWAKGLPLK 664 + L M LPL Sbjct: 848 LVDLVRDCMENA------LPLD 863 >gi|241761481|ref|ZP_04759569.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374388|gb|EER63885.1| DNA polymerase I [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 921 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 90/530 (16%), Positives = 173/530 (32%), Gaps = 88/530 (16%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D +++ + N ++ I+ + GI + G + L F Sbjct: 403 EDPSILKIGQNIKYDMIVLSRY-GISVQPFDDTMLLSYDLDAGRHGHGMDELSLLYFDHQ 461 Query: 122 LTKMEE----GKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRELFKR 176 + GK+ I + Y A+ + W L D +++ Sbjct: 462 PISFKSVCGTGKSAITFNHVPIPAATRYAAEDADITFRLWALLKPRLSSDGAT--RIYE- 518 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRS 234 + +R L + + G +D + L A + +L+E+I L +I S Sbjct: 519 -----EVDRPLPPVIARMEQAGITVDSVALHHLSSRFAHDISRLEEEIYALAGCRFLISS 573 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSA 288 +Q L LF G+ S+ + + + + +LA + IL S Sbjct: 574 PKQ---LGEVLFGTMGLAGGKKSKSG-QYSTNVTELERLAAEGEVIASKILEWRQLSKLK 629 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L ++ GR+ + GA +TGR S QN+P + Sbjct: 630 STYSDALIGKINPETGRVHTSFSLVGA-QTGRLSSTDPNLQNIPIRT------------- 675 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R+ IA G L+ AD + IE R+ A +A E ++AF ED Sbjct: 676 -----------EIGREIRNAFIAKKGHLLLSADYSQIELRLAAHVADEKALLQAFQEKED 724 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T + F V +E RA K + A+ Y G A + + ++ Sbjct: 725 IHALTAKQLFGH----VDRESRARAKTINFAILYGISAWGLAARLEIDRFSAQEMIDRYF 780 Query: 464 QNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + D +S + + A+ + G + Sbjct: 781 ERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINAPIQGMS 840 Query: 503 CELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEGGSISARRVAN 545 +++K+A + +++ + + V E A+ V Sbjct: 841 ADIIKRAMVRMEPALAKVGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIR 890 Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 15/117 (12%) Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDC-SYLNTAT-------SQLMRERTYGGKLTEN 600 ++ R +R I R L + + G + T ++ + + Sbjct: 775 MIDRYFERFPAIRHYIDRTLDFVRLHGYVETPFGRKTHLPAIKSRKVTERQAAERQAINA 834 Query: 601 IVQAISRDILCEGMKNATKNGYDI-------VLTVHDEIVSETPDTPYFSVGTLCSL 650 +Q +S DI+ M + +L VHDE++ E P+ + Sbjct: 835 PIQGMSADIIKRAMVRMEPALAKVGLSSVKMLLQVHDELIFEVPEEDIEKAKPVIRQ 891 >gi|254412782|ref|ZP_05026555.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] gi|196180517|gb|EDX75508.1| DNA polymerase I superfamily [Microcoleus chthonoplastes PCC 7420] Length = 984 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 106/620 (17%), Positives = 200/620 (32%), Gaps = 115/620 (18%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 +Q + L L + V N F+R++ +T GI + + T + + +S Sbjct: 439 DQQTVLEALRPILERDRYPKVLQNVKFDRLVL-RTQGIKLAGV-VMDTMLASYVLNPDNS 496 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRD 166 L + + ++ K L K + +Q + F + Sbjct: 497 HNLNSLTERYFPQIQ-LKSYKDLKIPKGKTIAELSSKTVANYCGMQVYATFKLVPKLREK 555 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +EA + K L + E+ L + + +G RID + +L E + ++ ++++ K Sbjct: 556 LEAIPAIEKLL---LEVEQPLEPVLAQMEYQGIRIDTAYLKELSESLEKKLVDIEQNAYK 612 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF +D + H+ + +L D + Sbjct: 613 QAGEEF-NLGSPKQLSELLFEKLNLDRRKSRKMKTGYSTDHATLEKLQGDHPVIDTILEH 671 Query: 287 SAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + V D R+ + TGR S QN+P + Sbjct: 672 RTLSKLKSTYVDALPKLVHKDTQRIHTDFN-QTITSTGRLSSSNPNLQNIPIRT------ 724 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + +G LV AD + IE R+LA ++ E ++ Sbjct: 725 ------------------AFSRQIRKAFLPESGWLLVSADYSQIELRILAHLSQEPVLVE 766 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCG 456 + N +DI+ T F + V+ E+R +GK + + Y G + F A+ Sbjct: 767 TYRNNQDIHAVTAKLLFEK--ETVTPEERRLGKTINFGVIYGMGPQRFAREAGVSAAEGK 824 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + Q F +++ G + + K + G Sbjct: 825 EFIDRLKQRYPKV----------------------FGYLEQMKG---DAIAKGYVETILG 859 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGD 576 RR +R K + + + + KG Sbjct: 860 R-----------------------RRYFEFNSNRLRDAKG------KNPQEIDLDEFKG- 889 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEI 632 + S L+R +Q S DI+ M + ++L VHDE+ Sbjct: 890 ---IGQYDSGLLRAAANAP------IQGSSADIIKIAMVKMHEVLQDYQARLLLQVHDEL 940 Query: 633 VSETPDTPYFSVG-TLCSLM 651 V E P + + + M Sbjct: 941 VFEVPPDEWEELQPKIRETM 960 >gi|295103350|emb|CBL00894.1| DNA polymerase I [Faecalibacterium prausnitzii SL3/3] Length = 857 Score = 244 bits (623), Expect = 3e-62, Method: Composition-based stats. Identities = 101/551 (18%), Positives = 179/551 (32%), Gaps = 97/551 (17%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 YA D V L + ++LL+ L + V NS Sbjct: 345 YAVQDTTVYLLE-------DAELLRLLDNADVTLDVFNSA-------------------- 377 Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 + A+ + + +L K I+ + + CT ++ Sbjct: 378 --PLYAKAMAAGGWGSSIVWDGKLAAYLLDASASKYQISELIPAYKAAAAFTCT--DYPD 433 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 A +L + + E T L ++ E L + + G +D D + + + Sbjct: 434 AGRLADLFARMKAEITACGEDALY--NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLR 491 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271 +E +++ I T + L LF G+ ++ T L Sbjct: 492 EELEQVLTRIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLREY 551 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L +D++ R A + L + + DGR+ T A RTGR S QN+P Sbjct: 552 PLVEDVLQYR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIP 609 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R+ +A G LV AD + IE R+LA Sbjct: 610 IRT------------------------ELGSQLRAYFVAKPGCVLVDADYSQIELRILAH 645 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KV 447 I G++ +AF NGEDI+ +T AK + P +V+ R+ K + + Y GA K Sbjct: 646 ITGDEHMQQAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYSLSKD 705 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486 L+ + + S + D A++ + ++ Sbjct: 706 IGVTVKEADAFLKNYLAAFPNVSGYMDKTIADAKANGYVSTLFGRRRTLPELASTNFNVR 765 Query: 487 DQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGG 536 A + GTA +++K A + + +L + +L V E Sbjct: 766 ASGERMARNTPIQGTAADVIKLAMVRVWKRLRDEKMASRLILTVHDELIVEAPEVEAEQA 825 Query: 537 SISARRVANVP 547 + R Sbjct: 826 ARILREEMEGC 836 >gi|325970645|ref|YP_004246836.1| DNA polymerase I [Spirochaeta sp. Buddy] gi|324025883|gb|ADY12642.1| DNA polymerase I [Spirochaeta sp. Buddy] Length = 948 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 97/548 (17%), Positives = 172/548 (31%), Gaps = 94/548 (17%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-CTSVLARTNG 104 + ++ + S L +YL + V N ++ + ++ I K T V A Sbjct: 420 ELVDREQVRSLLEEYLGSGRLSLVGQNIKYDYKVLRQW---GIMPKNIYFDTMVAAWLLD 476 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 S LA + ++ T D P D ++ +F Y Sbjct: 477 STSVFNMDYLAEKYLDYKT-------------VHYTDIVPKDKLLSDIPLEQAVF--YGA 521 Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L+K L + E L ++ + G ++ L+ L Sbjct: 522 EDADVTFRLYKLFSELLGARNLRSLLDEVEMPLLVIIANMELAGIYLERKLIEPLSAEFE 581 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + I + + L+ LF+ I + S + L Sbjct: 582 GRIDAIRNQIFAICGHAF-NLNSPQQLQEVLFVERNIPTGAKTRSGF--STSTDVLEPLR 638 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 D L + KL + L ++ R+ + G + TGR S Q Sbjct: 639 DDYPEVELILQYRTLNKLKTTYIDKLPLQINEKTHRIHPSFAQTG-TETGRLSCKDPNLQ 697 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + +RS + G + AD + IE V Sbjct: 698 NIPVRT------------------------EEGRRIRSAFVPQAGHVFLSADYSQIELVV 733 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA +A + AFA G D++ +T + F+ P+D+V+ QR I K + + Y G Sbjct: 734 LAHMADDPGLKGAFAAGIDVHSSTASLIFDVPLDQVTPVQRRIAKTINFGVMYGMGTHSL 793 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485 A K S + Q+ + S +F + + S + Sbjct: 794 AMDLKIPHSEAKQFIDQYFERYSSVRSFVEATKTMSQQVGSVSTLLGHVRTITEINSRSA 853 Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ------LWKDLTEGFACVVQEGGS 537 + + AV + G+A ++VK A + Q L + + V E Sbjct: 854 VERAKAERIAVNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEI 913 Query: 538 ISARRVAN 545 + V Sbjct: 914 EETKAVVK 921 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 6/58 (10%) Query: 598 TENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++Q + DI+ M K G ++L +HDE++ E P+ + Sbjct: 864 VNTVIQGSAADIVKLAMLRVDSLLKQKKLGARLLLQIHDELIFEVPEAEIEETKAVVK 921 >gi|32477714|ref|NP_870708.1| DNA polymerase I [Rhodopirellula baltica SH 1] gi|32448268|emb|CAD77785.1| DNA polymerase I [Rhodopirellula baltica SH 1] Length = 1027 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 95/571 (16%), Positives = 175/571 (30%), Gaps = 105/571 (18%) Query: 4 LFIDIETRSP----QPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55 L ID ET S L + W E A I PV+ D + + Sbjct: 449 LAIDTETTSTHARGCDLVGISIAWQPGEAAYI----------PVRAPDGDPAINELIVIE 498 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L + V HN F+ I+ ++ G+ + +++A L + Sbjct: 499 ILRDVLESSAIEKVGHNLKFDVIVL-RSAGVQL--GGITMDTMVADYL-----LNSGGRN 550 Query: 116 LNFSEHLTKMEEGKAL-IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + + L I D + V + DV+ L Sbjct: 551 HGLDDLAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSPY------ACEDVDVPIRLA 604 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L + E L + + G ++ D + K+ E ++ L + Sbjct: 605 PTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALV 664 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + L + LF G+ ++ ++ T +LS + + +L Sbjct: 665 FSAAGHEF-NLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQY 723 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ ++ L + + GR+ + + + TGR S QN+P + Sbjct: 724 RQATKLKNTYIDALPQLICDKTGRVHTSFR-QDVAATGRLSSSEPNLQNIPIRT------ 776 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R+ A G L+ AD + IE RVLA +G++ I Sbjct: 777 ------------------EQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALI 818 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 A+ + DI+ A+ +V+ + R I K + + Y G AK Sbjct: 819 GAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEA 878 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------------- 489 ++ + Q F A + Sbjct: 879 RDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTE 938 Query: 490 -PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +L+K A H+ + Q Sbjct: 939 PERIAINMPIQGTAADLIKLAMLRVHEQLKQ 969 Score = 41.6 bits (96), Expect = 0.47, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 10/86 (11%) Query: 589 RERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPY 641 R T ++ N+ +Q + D++ M + ++L +HDE++ E+PD Sbjct: 934 RSLTEPERIAINMPIQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEEL 993 Query: 642 FSV-GTLCSLMTKNPSWAKGLPLKAE 666 ++ T+ MT +PLK + Sbjct: 994 DALSDTIREAMTSVME--LDVPLKVD 1017 >gi|71899481|ref|ZP_00681639.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730794|gb|EAO32867.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 462 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 73/422 (17%), Positives = 141/422 (33%), Gaps = 81/422 (19%) Query: 157 QLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDL 205 Q +Y D + T L L P + E L + + I G +ID + Sbjct: 24 QEATQYAAEDADITLRLHCVLAPKLLAEPILERVYREIEMPLVAVLERIEANGVQIDAEE 83 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + K +++ + + L + L++ LF + +V + S Sbjct: 84 LYKQSADLSRRMVIAQQKAMDLAGRHF-NLDSPKQLQVLLFDELKLPVVVKTPKGQPSTN 142 Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGR 319 + + + L R+ ++ KL L E + GR+ GA+ TGR Sbjct: 143 EEA-LEAIVDQHALPRVILEYRSLAKLRNTYTEKLPEMIHPHTGRVHTNYHQAGAA-TGR 200 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P + +R +A +G+KL+ Sbjct: 201 LSSSDPNLQNIPIRTDD------------------------GRRIRRAFVAPSGRKLIAC 236 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G+ + AF +G D++ A+ F ID+V+ +R K + L Sbjct: 237 DYSQIELRIMAHLSGDAGLVDAFESGVDVHCAIAAEVFGRGIDEVTPNERRAAKAINFGL 296 Query: 440 GYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------- 488 Y A+ + + F + + ++ + Sbjct: 297 IYGMSAFGLARQLGISRGEAQDYIALYFDRFSGVRDFMENTRQQARDRGYVETVFGRRLY 356 Query: 489 --------------YPEFAVKDKLIGTACELVKKAW------------RAKHQGVLQLWK 522 A+ + GTA +++K+A R + +LQ+ Sbjct: 357 LNSIASGNQTQRAGAERAAINAPMQGTAADIIKRAMVAVDGWLGVGGHRERALMILQVHD 416 Query: 523 DL 524 +L Sbjct: 417 EL 418 Score = 44.3 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 12/174 (6%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551 A+ ++ G + V R + + F Q G S A+ + Sbjct: 268 AIAAEVFGRGIDEVTPNERRAAKAINFGLIYGMSAFGLARQLGISRGEAQDYIALYFDRF 327 Query: 552 RRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + +R Y + V G YLN+ S +R + N +Q + DI Sbjct: 328 SGVRDFMENTRQQARDRGYVETVFGRRLYLNSIASGNQTQRAGAERAAINAPMQGTAADI 387 Query: 610 LCEGMKNATK----NGYD----IVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 + M G+ ++L VHDE+V E + + V + + M Sbjct: 388 IKRAMVAVDGWLGVGGHRERALMILQVHDELVFEADEGFVPTLVHEVSARMAAA 441 >gi|295399494|ref|ZP_06809476.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] gi|294978960|gb|EFG54556.1| DNA polymerase I [Geobacillus thermoglucosidasius C56-YS93] Length = 878 Score = 244 bits (622), Expect = 4e-62, Method: Composition-based stats. Identities = 81/516 (15%), Positives = 174/516 (33%), Gaps = 62/516 (12%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I A A + + RT+ + S +L DE+ + I+ K G+ + Sbjct: 334 ILGFAIANEHG--NFFIRTDTALSSSLFTTWLEDESKKKSVFDGK-RAIVSLKWQGVHLR 390 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 ++A PS ++ + ++ + KG+ P + Sbjct: 391 --GIQFDLLIASYLLNPS--QSTEDVASIAKTKQYVGVQSDEAVY-GKGAKQKVPDEQVL 445 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A H+ ++ + ++ +D E L + + G ++D++ + ++ Sbjct: 446 AEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERLKEM 505 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 E +A++ K+++++I +L + L + LF + ++ ++ T +L Sbjct: 506 GEELAEQLKEVEQEIYRLAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLE 564 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + IL+ + L + V D T+ ++TGR S Sbjct: 565 KLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSSTEPN 624 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385 QN+P + +R I S + AD + IE Sbjct: 625 LQNIPIR------------------------LEEGRKIRQAFIPSEPDWVIFSADYSQIE 660 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA IA ++ I AF +G DI+ T F+ ++V+ R K + + Y Sbjct: 661 LRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISD 720 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAES 480 G ++ ++++ + + S Sbjct: 721 YGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITS 780 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + ++ A+ + G+A +++KKA + Sbjct: 781 RNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKR 816 >gi|289674485|ref|ZP_06495375.1| DNA polymerase I [Pseudomonas syringae pv. syringae FF5] Length = 780 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 78/461 (16%), Positives = 156/461 (33%), Gaps = 67/461 (14%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A +++ P +L ++ + L L D V ++ F L Sbjct: 364 AAYIPLTHSYMGVPQQL----DRDTVLKALKPLLEDPDKTKVGQHAKFAINLLANCA--- 416 Query: 88 IPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 A+ L + T+ + + I+ Sbjct: 417 -------IDGDQAQGIDLQGVRFDTILESYVLDSTATRHDRDSLVAKYLTHTPINFQEIA 469 Query: 147 CTRANHVQ----AWQLFGEYCKRDVEATRELFKRL-----------IPLSDGERDLWLLD 191 A + A + G Y + + T L + L+D E L + Sbjct: 470 GKGAKQLSFDQIALEQAGNYAAEEADLTLRLHEVFDARLAAIPTLQPVLNDIEMPLVPVL 529 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I +G +D +L+ + + L+ + + + L + L+ G+ Sbjct: 530 ARIERQGALVDANLLGIQSVELGDKMTALEREAFAIAGEEF-NLGSPKQLGVILYEKLGM 588 Query: 252 DLVDMSEGTLKSILSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGR 304 ++ + T ++ + + + +LA+ D L ++ ++ KL + L E ++ GR Sbjct: 589 PILSKT-ATGQASTAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGR 647 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + + TGR S QN+P + + Sbjct: 648 IHTSY-HQAVAVTGRLSSSDPNLQNIPIRT------------------------AEGRRI 682 Query: 365 RSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 R +A G KL+ AD + IE R++A +A ++ + AF N D++ T A+ F ++ V Sbjct: 683 RQAFVAPKGYKLLAADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENV 742 Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQN 465 + + R K + L Y A +A G+D +Q Sbjct: 743 TTDMRRSAKAINFGLIYGMSA---FGLAKQIGVDRKQSQAY 780 >gi|85375693|ref|YP_459755.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] gi|84788776|gb|ABC64958.1| DNA polymerase I [Erythrobacter litoralis HTCC2594] Length = 948 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 98/596 (16%), Positives = 185/596 (31%), Gaps = 106/596 (17%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ--SAMPS 55 + +D ET + L + + A +A + D D + +P Sbjct: 356 RIIAVDTETSALDAMRADLVGISLATGANEACYIPLGHLNDGGGGS--DMFSEKPEQVPL 413 Query: 56 D-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 D L L + V+ + N ++ + + GI + T +L+ S Sbjct: 414 DDAVAALKPLLESDAVLKIGQNIKYDLNVLARY-GIAVAPID--DTMILSFDLDAGRSEG 470 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + C P+ EY D + T Sbjct: 471 GVGGHGMDELSERHLGHTPLSFKEVCGTGRKQIPF------GEVPLDKATEYAAEDADVT 524 Query: 171 RELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + L P E R L + + G ++D + KL E A E KL Sbjct: 525 WRLHQHLKPRLAIEHGARIYERVDRPLIPVVAQMERHGIKVDRARLAKLSEEFATETAKL 584 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQ 272 ++ I +L L LF G + L+ + + + Sbjct: 585 EKTIHELAGKEFT-VGSPKQLGEVLFDDLGHKGGKKGKSGQYSTDQSVLERLSG--DGAE 641 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 +A ++ R + + L +A++ D GR+ + GA +TGR S QN+P Sbjct: 642 IADKVLEWRQ-LTKLKSTYTDALQQAINPDTGRVHTSYSLVGA-QTGRLSSTDPNLQNIP 699 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R + NG L+ AD + IE R+ A Sbjct: 700 IRT------------------------PIGRQIREAFVPENGNVLLAADYSQIELRLAAH 735 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 +A +AFA GEDI+ T + + + ++ RA K + A+ Y G A Sbjct: 736 MADVPELKEAFAEGEDIHARTAREMYG----EADRDTRARAKTINFAILYGISRWGLAGR 791 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 K + + + ++ + + S + + Sbjct: 792 LKIEPDEAQELIDTYFKRFPGIQSYIHETLETVRERGYSETLFGRKTWFPRIGSKNQAER 851 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEG 535 A+ + GT+ +++K+A + +++ + + + EG Sbjct: 852 QGSERAAINAPIQGTSADIIKRAMARMMPALEDAGLEHVRMLLQVHDELVFELPEG 907 >gi|291542252|emb|CBL15362.1| DNA polymerase I [Ruminococcus bromii L2-63] Length = 854 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 96/550 (17%), Positives = 185/550 (33%), Gaps = 110/550 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 KL+++ ET E + A +D K++ T++ ++++ Sbjct: 319 KKLYLNFET---------------ENKELKSFAVLFDG---KVYISTDEEL----FVKFI 356 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK----NACLALN 117 D + N L+ +I + + LA PSS N C + Sbjct: 357 ADSELEKYTRNIK---TLYAYADEKNIDVENIVFDIELAAYLIEPSSKDYSDKNLCASYE 413 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + + E+ + A C + D +A+ + Sbjct: 414 IALPVCTDEQNEKYEAFACYAELCEKLGDKIKAHGQEKL--------------------- 452 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 LS+ E L + + + G +D + E+++ + K+L+ I + + Sbjct: 453 --LSEIEIPLAKVLARMENIGVCVDRQGIESYGEMLSAQIKELETAIYESAGCEF-NINS 509 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT--- 294 L + LF G+ ++ + + L + + + + KLN+ Sbjct: 510 PKQLGVVLFENLGLPCKKKTKSGYSTNAE--VLESLRYEHPVVEMVLRYRTLSKLNSTYC 567 Query: 295 --LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + ++ DGR+ +RTGR S QN+P + Sbjct: 568 EGLLKVIADDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRT------------------ 608 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R A +G LV AD + IE RVLA I+G+ IKAF + EDI+ T Sbjct: 609 ------ELGREMRKFFCARDGWALVDADYSQIELRVLAHISGDKNMIKAFKDNEDIHAIT 662 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468 ++ FN P+D V+ R+ K + + Y G AK ++ + + Sbjct: 663 ASQVFNMPLDMVTPIMRSRAKAVNFGIVYGIGAFSLAKDIGVSNKEAKHYIESYLAHYSG 722 Query: 469 TSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 ++ + + S ++ A + GTA +++K Sbjct: 723 VDSYMKNVVEKANADGYVETMFGRRRNLPELTSSKHMIRAFGERVARNMPIQGTAADIIK 782 Query: 508 KAWRAKHQGV 517 A + + Sbjct: 783 IAMIKVDERM 792 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R +G ++ N+ +Q + DI+ M + +VL VHDE++ E P Sbjct: 760 IRAFGERVARNMPIQGTAADIIKIAMIKVDERMKAENLRARLVLQVHDELIVEAPQDESM 819 Query: 643 SVGTLCS 649 V + Sbjct: 820 RVALIVQ 826 >gi|149370950|ref|ZP_01890545.1| DNA polymerase I [unidentified eubacterium SCB49] gi|149355736|gb|EDM44294.1| DNA polymerase I [unidentified eubacterium SCB49] Length = 949 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 92/564 (16%), Positives = 184/564 (32%), Gaps = 97/564 (17%) Query: 1 MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + + D ET PL A + A++W+ ++ +++ Sbjct: 373 MKQPSVCFDTETTGLNPLT----------AELVGIAFSWEAGKGFYIAFPKEKEAAQEII 422 Query: 59 QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113 + LR + + N ++ + +K DI K + ++LA Sbjct: 423 ELLRPFFEATEIEKIGQNLKYDLKVLRKY---DIVVKGQLFDTMLAHYLINPDMRHNMDI 479 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 LA + + LI + KG D A+ + Y D + T +L Sbjct: 480 LAETYLNYTP--VSITELIGK--KGKNQKSMRDVPVADQTE-------YAVEDADITLQL 528 Query: 174 FKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + +D E L + + G +D + L + + + L+++ Sbjct: 529 KEHFSKELGEANTQKLFTDIEVPLLRVLAAMEAEGINLDKTFLNSLSDDLESDIASLEKN 588 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I + L LF + T + + ++ LAKD + Sbjct: 589 IYAEAGEEFNIA-SPKQLGEILFGKMKLVEKPKKTKTGQFSTAEDVLSALAKDHKIIADV 647 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L V + T + TGR S QN+P + Sbjct: 648 LEYRGLAKLKSTYVDALPLQVEPATQRVHTDYMQTVAATGRLSSNNPNLQNIPIRTER-- 705 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 VR + L+ AD + IE R++A ++ E+ Sbjct: 706 ----------------------GRQVRKAFVPRDENYVLLAADYSQIELRIIAALSQEET 743 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF NGEDI+ +T +K F+ P+++V++EQR+ K + + Y G + Sbjct: 744 MMEAFKNGEDIHASTASKVFDVPLEEVTREQRSNAKTVNFGIIYGVSAFGLSNQTSLSRG 803 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492 + + + + + + + ++ Sbjct: 804 EAKELIDAYYETYPKLKHYMSEQVNFARDNGYVETIMGRRRYLNAINGSNAIVRGAAERN 863 Query: 493 AVKDKLIGTACELVKKAWRAKHQG 516 AV + G+A +++K A ++ Sbjct: 864 AVNAPIQGSAADIIKIAMINIYRK 887 >gi|229824800|ref|ZP_04450869.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] gi|229790803|gb|EEP26917.1| hypothetical protein GCWU000182_00149 [Abiotrophia defectiva ATCC 49176] Length = 961 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 64/370 (17%), Positives = 127/370 (34%), Gaps = 54/370 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + +RG +++ + + + E + K +E+I K+ + L Sbjct: 563 EIEMPLVSTLYEMEERGIKLNKEELHEYSEELDVLIKNYEEEIYKMAGEEF-NINSPKQL 621 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF + ++ T +L + + +LN + + L Sbjct: 622 GVILFEKLRLPYGKKTKTGYSTSADVLERIRLEDPIVERVLNYRQVAKLKSTYTDGLEGY 681 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 V DGR+ L + TGR S QN+P + Sbjct: 682 VKEDGRIHCKLNQL-VTATGRLSSTEPNLQNIPIR------------------------M 716 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G V AD + IE R++A ++G++ IKA+ EDI+ T + F Sbjct: 717 ELGKRIRKAFVPKEGYVFVDADYSQIELRIMAHLSGDEELIKAYQGEEDIHRITASHVFG 776 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 P+D+V+ QR K + + Y G + + + + + D Sbjct: 777 VPLDEVTDLQRRNAKAVNFGIIYGISSFGLGENLGISRKDAEKYINDYFKAYPQVKKYLD 836 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + S++ + A+ + GTA +++K A + Sbjct: 837 SLVETGIEKGFVKTYFGRIRPIPELNSNNFMKRQFGERIAMNSPVQGTAADIIKIAMNSV 896 Query: 514 HQGVLQLWKD 523 + + + D Sbjct: 897 NARLKSEFPD 906 >gi|149185474|ref|ZP_01863790.1| DNA polymerase I [Erythrobacter sp. SD-21] gi|148830694|gb|EDL49129.1| DNA polymerase I [Erythrobacter sp. SD-21] Length = 944 Score = 243 bits (621), Expect = 5e-62, Method: Composition-based stats. Identities = 99/599 (16%), Positives = 195/599 (32%), Gaps = 106/599 (17%) Query: 2 SKLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAM 53 + +D ET S L V + QA + + ++P ++ ++ Sbjct: 356 RLVAVDTETTSLDCMLCDLVGVSLATGPNQACYIPLGHGGSDMFAEKPQQIG----KAEA 411 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L L D+ V+ V N ++ + + GI + T +++ S Sbjct: 412 LAALKPLLEDDAVLKVFQNGKYDLNVLARE-GIAVAPID--DTMIISFALDAGRSESGIG 468 Query: 114 LALNFSEH-LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 E + C + P+ + EY D + T Sbjct: 469 GGHGMDELAERHLGHPCISFKELCGTGRKAIPFAEVPLD------KATEYAAEDADVTWR 522 Query: 173 LFKRL---IPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L L +P+ +R L + + G ++D + KL E A E K+L+ Sbjct: 523 LHAMLKRRLPVEGGTKIYERVDRPLVPVVAGMERHGIKVDRARLAKLSEEFATETKRLEG 582 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQLA 274 +I ++ L LF G + L+ + + ++A Sbjct: 583 EIHEIAGQEFT-VGSPKQLGEILFDKLGFKGGKKGKSGQYSTDQSVLEKLSG--DGAEIA 639 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 ++ R + + L EA++ GR+ + GA +TGR S QN+P + Sbjct: 640 AKVLEWRQ-LAKLKSTYTDALQEAINPRSGRVHTSYSLVGA-QTGRLSSTDPNLQNIPIR 697 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G L+ AD + IE R+ A +A Sbjct: 698 T------------------------EIGRQIRDAFVAEEGNVLLAADYSQIELRLAAHMA 733 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 +AFA GEDI+ T + F +V+++ RA K + A+ Y G A Sbjct: 734 DVAPLKEAFAEGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLG 789 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 A + + + + + + S + + Sbjct: 790 VEADEAQAMIDTYFKRFPGIQKYILHTLEYVREKGYSETLFGRKTWFPRINSKNQAERQG 849 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEGGSISA 540 A+ + GT+ +++K+A + + +++ + + + E +A Sbjct: 850 SERAAINAPIQGTSADIIKRAMVRMNSALEEAGLGHVRMLLQVHDELVFELPEADVAAA 908 >gi|157833899|pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 89/491 (18%), Positives = 158/491 (32%), Gaps = 75/491 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 SVLA GL + + L + + + + ++ Sbjct: 354 KDLSVLALREGLGLPPGDDPMLLAYLLDPSNTTPEGVARRYGGEWTEEAGERAALSE--- 410 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 +LF R +E L L + ER L + + G R+D+ + L + Sbjct: 411 ---RLFANLWGR-LEGEERL---LWLYREVERPLSAVLAHMEATGVRLDVAYLRALSLEV 463 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E +L+ ++ +L + L LF G+ + +E T K S + + L Sbjct: 464 AEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEAL 522 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L + + GRL A+ TGR C Sbjct: 523 REAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTRFN-QTATATGRLCCCDPNL 581 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R IA G LV D + IE R Sbjct: 582 QNIPVRT------------------------PLGQRIRRGFIAEEGWLLVALDYSQIELR 617 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G DI+ T + F P + V R K + + Y A Sbjct: 618 VLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLMRRAAKTINFGVLYGMSAHR 677 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 678 LSQELAIPYEEAQAFIERYFQSFPKVRAWIEKTLEEGRRRGYVETLFGRRRYVPDLEARV 737 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQLWKDLTEGFACVVQE 534 +++ A + GTA +L+K A +LQ+ +L E Sbjct: 738 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARMLLQVHDELVLEAPKERAE 797 Query: 535 GGSISARRVAN 545 + A+ V Sbjct: 798 AVARLAKEVME 808 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%) Query: 498 LIGTACELVKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G E V R + + + ++ A+ + + Sbjct: 646 MFGVPREAVDPLMRRAAKTINFGVLYGMSAHRLSQELAIPYEEAQAFIERYFQSFPKVRA 705 Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L RR Y + G Y+ +++ R ++ N+ VQ + D++ M Sbjct: 706 WIEKTLEEGRRRGYVETLFGRRRYVPDLEARVKSVREAAERMAFNMPVQGTAADLMKLAM 765 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + G ++L VHDE+V E P +V L +M Sbjct: 766 VKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVM 807 >gi|160880934|ref|YP_001559902.1| DNA polymerase I [Clostridium phytofermentans ISDg] gi|160429600|gb|ABX43163.1| DNA polymerase I [Clostridium phytofermentans ISDg] Length = 994 Score = 243 bits (621), Expect = 6e-62, Method: Composition-based stats. Identities = 69/374 (18%), Positives = 133/374 (35%), Gaps = 59/374 (15%) Query: 177 LIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L+PL + E L + RG R+D + + + + +L++ I +L + Sbjct: 590 LLPLFAGIEMPLVYTLYDMEQRGIRVDTNGLKDYSDQLGVSIVELEKQIFELVGVEF-NI 648 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 L LF G+ ++ + + +L+ + + +L + KL Sbjct: 649 NSPKQLGEILFQRLGLSYGKKTKTGYSTSAE--VLEKLSSEHPVIKLILQYRQLTKLKST 706 Query: 293 --NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L V DGR+ GT A+ TGR S QN+P + Sbjct: 707 YADGLVSYVEGDGRIHGTFNQTIAA-TGRLSSTEPNLQNIPIR----------------- 748 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I +G + AD + IE R+LA ++ + I+A+ +DI+ Sbjct: 749 -------MELGRKIRKVFIPEDGYLFLDADYSQIELRLLAHMSNDARLIEAYRQAQDIHR 801 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466 T ++ F+TP D+V+ QR+ K + + Y + + + ++ Sbjct: 802 LTASEVFHTPFDEVTSAQRSNAKAVNFGIVYGISSFSLGQDLDITRKEAEEYINKYFMTY 861 Query: 467 KSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACEL 505 T+ D E + A+ + GTA ++ Sbjct: 862 PGVKTYLDGLIEEGKETGVVKTLYGRIRPVPNLTNSNFMKRSAEERIAMNSPIQGTAADI 921 Query: 506 VKKAWRAKHQGVLQ 519 +K A +Q + + Sbjct: 922 MKLAMIHVNQVLKE 935 >gi|148657518|ref|YP_001277723.1| DNA polymerase I [Roseiflexus sp. RS-1] gi|148569628|gb|ABQ91773.1| DNA polymerase I [Roseiflexus sp. RS-1] Length = 965 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 101/543 (18%), Positives = 178/543 (32%), Gaps = 84/543 (15%) Query: 42 VKLWDRTEQSAMPSD-LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 V L T ++ +P + ++ LR D +AHN+ F+ + ++ GI + + T Sbjct: 411 VPLGHTTGEAQLPRERVIAALRPFFADPARSRIAHNAKFDIEVLERA-GIPVAGVAF-DT 468 Query: 97 SVLARTNGLPSSLKNAC-----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 + A +LK+ LA + +GK + + PY A+ Sbjct: 469 MLAAALLDKRRNLKDLAFYELNLAAPLESIEALIGKGKNQVTFADVPIARATPYAAADAD 528 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + E R + ++F RL E L + + G +D+ + L E Sbjct: 529 MTLRLKPALEAKLRAAGSVADVFYRL------EMPLVPVLVRMEQAGILLDVPYMRALGE 582 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDMSEG-TLKSILSHSN 269 + +E +++++ I + + L LF + + T + L+ Sbjct: 583 RMGRELEQIEQQIYAIAGQTF-NINSGDQLSEVLFGPKINLPTTGLDRTRTGRYSLTAQA 641 Query: 270 ITQLAK-------DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + +L +LIL S ++ L V+ GR+ GA+ TGR S Sbjct: 642 LEELQASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLS 700 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + VR IA+ G L+ AD Sbjct: 701 SNSPNLQNIPTRT------------------------EEGREVRRGFIAAPGHLLIAADY 736 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA + G+ I+ F G DI+ T A+ F V K QR I K + + Y Sbjct: 737 SQIELRVLAHMTGDPNLIQTFIEGRDIHAATAARLFGVGFSAVDKNQRRIAKTVVFGVIY 796 Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------- 484 G A+ + + D Sbjct: 797 GISPFGLAQRLGISREQARGLIDSLFDQFPRIRDYIDRTLDIGRSEGYVQSLFGRRRPMF 856 Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRAKH------QGVLQLWKDLTEGFACV 531 + A+ + TA +++K A A Q ++ + + Sbjct: 857 DLRVSGPRRQAAEREAINHPIQSTAADIMKLAMIAVDAELQRRQMRTRMLLQVHDELIFE 916 Query: 532 VQE 534 E Sbjct: 917 APE 919 >gi|327537894|gb|EGF24594.1| DNA polymerase I [Rhodopirellula baltica WH47] Length = 975 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 95/571 (16%), Positives = 175/571 (30%), Gaps = 105/571 (18%) Query: 4 LFIDIETRSP----QPLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWD---RTEQSAMPS 55 L ID ET S L + W E A I PV+ D + + Sbjct: 397 LAIDTETTSTHARGCDLVGISIAWQPGEAAYI----------PVRAPDGDPAINELIVIE 446 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L + V HN F+ I+ ++ G+ + +++A L + Sbjct: 447 TLRDVLESSAIEKVGHNLKFDVIVL-RSAGVQL--GGITMDTMVADYL-----LNSGGRN 498 Query: 116 LNFSEHLTKMEEGKAL-IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + + L I D + V + DV+ L Sbjct: 499 HGLDDLAQRRLDHTNLSIKDLIGTGKKQITMDQVPVDDVSPY------ACEDVDVPIRLA 552 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L + E L + + G ++ D + K+ E ++ L + Sbjct: 553 PTLRDELNESGLDGLFDEVEMPLTEVLAEMEFNGIHVNADTLAKMSERFDKDIADLRALV 612 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + L + LF G+ ++ ++ T +LS + + +L Sbjct: 613 FSAAGHEF-NLDSPKQLGVVLFEELGLPVIKKTKTGVSTDADVLSQLAVNHEIAEHVLQY 671 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ ++ L + + GR+ + + + TGR S QN+P + Sbjct: 672 RQATKLKNTYIDALPQLICDKTGRVHTSFR-QDVAATGRLSSSEPNLQNIPIRT------ 724 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R+ A G L+ AD + IE RVLA +G++ I Sbjct: 725 ------------------EQGKAIRAAFTAGREGWSLLGADYSQIELRVLAHYSGDEALI 766 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 A+ + DI+ A+ +V+ + R I K + + Y G AK Sbjct: 767 GAYHDDADIHTRVAAEVNGIEESEVTSDLRRIAKTINFGIVYGQSPFGLAKTLGISNDEA 826 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------------- 489 ++ + Q F A + Sbjct: 827 RDYIELYFQRYSGVEAFMMDTLARCRNEGYVATMLGRRREIKGVRDLAKLPESKRRSLTE 886 Query: 490 -PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +L+K A H+ + Q Sbjct: 887 PERIAINMPIQGTAADLIKLAMLRVHEQLKQ 917 Score = 40.9 bits (94), Expect = 0.65, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + D++ M + ++L +HDE++ E+PD ++ + MT Sbjct: 896 IQGTAADLIKLAMLRVHEQLKQSDLQARLLLQIHDELLLESPDEELDALSDMIREAMTSV 955 Query: 655 PSWAKGLPLKAE 666 +PLK + Sbjct: 956 ME--LDVPLKVD 965 >gi|297583657|ref|YP_003699437.1| DNA polymerase I [Bacillus selenitireducens MLS10] gi|297142114|gb|ADH98871.1| DNA polymerase I [Bacillus selenitireducens MLS10] Length = 878 Score = 243 bits (620), Expect = 7e-62, Method: Composition-based stats. Identities = 85/496 (17%), Positives = 161/496 (32%), Gaps = 75/496 (15%) Query: 56 DLLQYLRDETVMCVAHNSLFE-------RILFK-KTLGIDIPSKRWICTSVLARTNGLP- 106 + + L + A + E R + GID+ +A P Sbjct: 349 EAEEALTSDVFKKWAEDDQKEIYTFDAKRTVVALGWAGIDL--SNTTFDIQMASYLIDPA 406 Query: 107 -SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 S + A +A + + +E A + KG + P + H+ K+ Sbjct: 407 SGSHEIADIANRKNGIQVQTDE-----AVYGKGKKQAIPEAEELSQHLGRKAAAILDLKK 461 Query: 166 DVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++E R L D E L ++ + G +D + + + + + KL++ I Sbjct: 462 NLEQELR-DNRQWELFQDLEMPLSVILGRMEANGVSVDQQELETIGKDLTERLAKLEQQI 520 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + + L LF G+ ++ ++ T +L D IL Sbjct: 521 YEAAGQSF-NINSPKQLGKVLFEDLGLPVLKKTKTGYSTSADVLEKLKGEHDVIDHILFY 579 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + + G++ ++TGR S QN+P Sbjct: 580 RQLGKLNSTYIEGLLKVIHPKTGKIHTIFN-QAVTQTGRLSSTEPNLQNIP--------- 629 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + S G KL AD + IE RVLA I+ ++ I Sbjct: 630 ---------------VRLEEGRKIRRAFVPSKPGSKLFAADYSQIELRVLAHISKDENLI 674 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF G DI+ T + F ++V+ E R K + + Y G ++ Sbjct: 675 SAFQEGMDIHTKTASDVFGVKGNEVTAEMRRTAKAVNFGIVYGISDYGLSQNLGISRKKA 734 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAV 494 + ++ ++ T+ + AE+ + A+ Sbjct: 735 QTFIDKYFESYPGVKTYMEDIVAEAREQGYVTTMLQRRRYLPDLTSRNFNQRSFAERTAM 794 Query: 495 KDKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 795 NTPIQGSAADIIKKAM 810 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLCS-LMTKN 654 +Q + DI+ + M + + V+ VHDE++ E P+ ++ L +M Sbjct: 798 IQGSAADIIKKAMVDMATELERQNLKSVMLLQVHDELIFEVPEDEIETMEKLVKDVMEST 857 Query: 655 PS 656 Sbjct: 858 IE 859 >gi|163753855|ref|ZP_02160978.1| DNA polymerase I [Kordia algicida OT-1] gi|161326069|gb|EDP97395.1| DNA polymerase I [Kordia algicida OT-1] Length = 943 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 84/509 (16%), Positives = 172/509 (33%), Gaps = 81/509 (15%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-G 104 D++E +A+ + + T+ V N ++ + D+P K + +++A Sbjct: 408 DQSETTAILEEFRPFFESTTIEKVGQNLKYDIKVLSNY---DMPVKGQLFDTMIAHYLIN 464 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L+ + + +++ K + + EY Sbjct: 465 PDMRHNMDVLSETYLNYQP-----VSIVELIGKKGKNQLSMR------QVPLEQQTEYAV 513 Query: 165 RDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T +L + I SD E L + + G +D D + +L + +A Sbjct: 514 EDADITYQLKEHFIKELESGHLTKLFSDVEVPLVSVLSAMEIEGINLDPDFLGELSKALA 573 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + +L++DI + + L LF + T + + ++ LA Sbjct: 574 VDIDRLEKDIYEQAGEEF-NIGSPKQLGPILFDKLKLVDKPKKTKTGQYSTAEDVLSYLA 632 Query: 275 KDL-----ILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 KD IL ++ L ++ T+ + TGR S QN Sbjct: 633 KDHQIVADILEWRQYRKLQSTYVDALPNEINPKTNRIHTVYAQAVAATGRLSSNNPNLQN 692 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388 +P + VR + L+ AD + IE R+ Sbjct: 693 IPIRTER------------------------GRQVRKAFVPRDENYVLLAADYSQIELRI 728 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 +A ++ ED ++AF +G DI+ +T ++ FN P+++V++EQR+ K + + Y G Sbjct: 729 IAALSKEDTMMQAFKDGADIHASTASRVFNVPLEEVTREQRSNAKTVNFGIIYGVSAFGL 788 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------------- 484 + S + + + + + A + Sbjct: 789 SNQTDLTRSESKELIDTYYETYPKLKAYMSNQVAFARENGYVETVLGRRRYLKDINSRNA 848 Query: 485 -MQDQYPEFAVKDKLIGTACELVKKAWRA 512 ++ AV + G+A +++K A Sbjct: 849 IVRGAAERNAVNAPIQGSAADIIKLAMIN 877 >gi|312109948|ref|YP_003988264.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] gi|311215049|gb|ADP73653.1| DNA polymerase I [Geobacillus sp. Y4.1MC1] Length = 878 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 81/516 (15%), Positives = 173/516 (33%), Gaps = 62/516 (12%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I A A + + RT+ + S +L DE+ + I+ K G+ + Sbjct: 334 ILGFAIANEHG--NFFIRTDTALSSSLFTTWLEDESKKKSVFDGK-RAIVSLKWQGVHLR 390 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 ++A PS ++ + ++ KG+ P + Sbjct: 391 --GIQFDLLIASYLLNPS--QSTEDVASIAKTKQYAGVQSDEAVY-GKGAKQKVPDEQVL 445 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A H+ ++ + ++ +D E L + + G ++D++ + ++ Sbjct: 446 AEHLVRKAAAIRALEQGFIHDLQENEQYSLFTDLELPLSTILAEMEFAGVKVDVERLKEM 505 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 E +A++ K+++++I +L + L + LF + ++ ++ T +L Sbjct: 506 GEELAEQLKEVEQEIYRLAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSAEVLE 564 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + IL+ + L + V D T+ ++TGR S Sbjct: 565 KLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHRDTNKVHTIFNQALTQTGRLSSTEPN 624 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385 QN+P + +R I S + AD + IE Sbjct: 625 LQNIPIR------------------------LEEGRKIRQAFIPSEPDWVIFSADYSQIE 660 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA IA ++ I AF +G DI+ T F+ ++V+ R K + + Y Sbjct: 661 LRVLAHIANDENLIDAFRHGLDIHTKTAMDIFHVSKEEVTPNMRRQAKAVNFGIVYGISD 720 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAES 480 G ++ ++++ + + S Sbjct: 721 YGLSQNLNITRKEAAEFIKRYFEIFPGVKQYMKDIVQEAKQKGYVTTLLHRRRYLPDITS 780 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + ++ A+ + G+A +++KKA + Sbjct: 781 RNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLSKR 816 >gi|150390874|ref|YP_001320923.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] gi|149950736|gb|ABR49264.1| DNA polymerase I [Alkaliphilus metalliredigens QYMF] Length = 897 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 85/544 (15%), Positives = 182/544 (33%), Gaps = 85/544 (15%) Query: 30 ITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 I ++ + E + + D +++ A+ + + L DE + + H+ E + Sbjct: 346 ILAITFSVNGEKLYYIDVRDFSDKEALLIQIKEVLEDEEIHKIGHDIKHE---IRHFYVH 402 Query: 87 DIPSKRWICTSVLARTNGLPS----SLKNACLAL---NFSEHLTKMEEGKALIARFCKGS 139 DI K +++ P+ +LK+ +GK LI+ Sbjct: 403 DIEMKNVTFDTMIGEYLIDPAKSSYALKDLAAQYIGQEVMSEEELRGKGKNLISIGEAPK 462 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 D Y C R + + + + EL K + E L + + +G Sbjct: 463 EDLMKYLCQRVSVIGKIYPEIKAKMQ----ELELEKLYY---EVELPLVEVLAAMEYKGI 515 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258 ++D ++ L+ ++ L + I +L + + L LF + + ++ Sbjct: 516 KVDRSMLEILEIEFGEQIDLLTKAIHELAETNF-NINSPKQLGEVLFEKLELPPIKKTKT 574 Query: 259 --GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGAS 315 T +L IL + ++ L ++ GR+ + Sbjct: 575 GYSTNAEVLEKLQDQHDIIPKILEYRQVTKLKSTYVDGLLNIINPETGRIHSNFN-QTVT 633 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P +R +A+ + Sbjct: 634 TTGRISSTEPNLQNIP------------------------IKLEMGRRLRKVFVANENHQ 669 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + +E RVLA I ++ + AF +DI+ T A+ F+ P+++V+ R+ K + Sbjct: 670 FIDADYSQVELRVLAHICEDENLLDAFLKNQDIHTRTAAEIFDVPMEEVTDSMRSSAKAV 729 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474 + Y G ++ + + S + D Sbjct: 730 NFGIVYGISDYGLSQNLNITRVKAKKYIDNYLDKYPSVKRYMDEIVEQAHQQGYVVTLFN 789 Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQL 520 + +S + ++ A+ + G+A +++K A ++ +LQ+ Sbjct: 790 RRRYLPELKSRNFNIRSFGERMAMNTPIQGSAADIIKIAMVNVYRRLKEQGLTSKLILQV 849 Query: 521 WKDL 524 +L Sbjct: 850 HDEL 853 Score = 45.1 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 7/58 (12%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTP 640 R++G ++ N +Q + DI+ M + + G ++L VHDE++ E PD Sbjct: 804 IRSFGERMAMNTPIQGSAADIIKIAMVNVYRRLKEQGLTSKLILQVHDELIVEAPDNE 861 >gi|227872290|ref|ZP_03990648.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841862|gb|EEJ52134.1| DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 868 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 70/392 (17%), Positives = 135/392 (34%), Gaps = 65/392 (16%) Query: 156 WQLFGEYCKRDVEAT-RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 WQ + + EL++ D E L + + G +D + +L E + Sbjct: 449 WQAKNRIFQELKDTEQWELYR------DVEEPLVPVLYRMEKAGILVDKEALLSYGEELK 502 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + L E+I + + L LF + ++ + + + +L Sbjct: 503 KNIAMLQEEIYAMAGEEF-NINSPQQLGGILFEKMQLPGGKKTKTGYSTAVD--VLEKLQ 559 Query: 275 KDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 +D + KLN+ LS V D R+ G+ Q + TGR S QN Sbjct: 560 EDYPIVGKILEYRTYSKLNSTYAEGLSNYVGEDQRIHGSFQ-QMVTATGRLSSTEPNLQN 618 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + RS I G + AD + +E R+L Sbjct: 619 IPIRT------------------------EMGRVFRSVFIPKEGSVFLDADYSQVELRLL 654 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++ ++ I+A+ DI+ T ++ F+ P+++V+ E R K + + Y G + Sbjct: 655 ASLSKDEKLIEAYRKDADIHRVTASEVFHVPLEEVTPELRRNAKAVNFGIVYGISAFGLS 714 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484 + ++++ + + D E A + + Sbjct: 715 EGLSISRQEAKEYIERYFTSYPKVKEYLDGEVAFAREHSFVKTLFGRRRPLPEIHASNFM 774 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + A+ + GTA +++KKA Q Sbjct: 775 RRSFSERVAMNAPIQGTAADIIKKAMVIVDQK 806 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ + M + ++ IVL +HDE++ E +V + Sbjct: 788 IQGTAADIIKKAMVIVDQKLSEKNCQSRIVLQIHDELLLEVVKEELETVKDI 839 >gi|154502707|ref|ZP_02039767.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] gi|153796590|gb|EDN79010.1| hypothetical protein RUMGNA_00520 [Ruminococcus gnavus ATCC 29149] Length = 871 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 69/382 (18%), Positives = 132/382 (34%), Gaps = 64/382 (16%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E L + G RI+ + + K E + ++ +L+ +I ++ + Sbjct: 472 LEIEMPLVFTLFDMEQAGVRIEAEELKKYGEQLGEQIVQLESEIYEMAGENF-NINSPKQ 530 Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L + LF + ++ T +L D IL + + L+ Sbjct: 531 LGVILFEKLQMPHAKKTKTGYSTAADVLEKLAPEFPIVDKILEYRQLTKLKSTYADGLAN 590 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + DGR+ GT + TGR S QN+P Sbjct: 591 YIGPDGRIHGTFN-QTITATGRISSTEPNLQNIP------------------------VR 625 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + G + AD + IE R+LA +G+ I+A+ +DI+ T ++ F Sbjct: 626 MELGRLIRKVFVPQEGYVFIDADYSQIELRILAHCSGDAHLIQAYREAQDIHRMTASQVF 685 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 TP D+V+ QR K + + Y G ++ ++ + + F Sbjct: 686 KTPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASQYIESYFETYPGIKKFL 745 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510 D + +S + ++ A+ + GTA +++K A Sbjct: 746 DDSVTHAKEEGYAVTLFGRRRPIPELKSSNFMQRNFGERVAMNAPIQGTAADIMKIAMIG 805 Query: 511 --------RAKHQGVLQLWKDL 524 R K + +LQ+ +L Sbjct: 806 VNRELKEKRMKSRMILQVHDEL 827 >gi|169831562|ref|YP_001717544.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] gi|169638406|gb|ACA59912.1| DNA polymerase I [Candidatus Desulforudis audaxviator MP104C] Length = 878 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 88/520 (16%), Positives = 154/520 (29%), Gaps = 97/520 (18%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 + + + + D V HN+ F R D S++A P Sbjct: 356 AADLEILAGVRRLFADAAVAKHMHNAKDFLRWA------PDFDLANICFDSMVAAYLVNP 409 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + + + P A + + Sbjct: 410 LAANQQLED--------------VVHQYLNLVLVPDGPAAP--ATAADCIRRLYPVLR-- 451 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 A ++ E L + + G +D D + L E +L I Sbjct: 452 --AELRGYELDYLFDRVELPLTRVLADMELAGVAVDRDQLEALSEEFGTRAGELAARICT 509 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + L LF G+ ++ + LA+ + L Sbjct: 510 LAGEDF-NLNSPRQLGYILFEKLGLPAGKKTK--TGYSTDAGVLLDLAEKHEIAALLLEY 566 Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++KL T L+ V GRL TL + TGR S QN+P + Sbjct: 567 RQLIKLKTTYADGLAALVDPATGRLHTTL-HQTVTNTGRLSSAEPNLQNIPIR------- 618 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399 +R I + + L+ AD + IE R+LA ++G+ I Sbjct: 619 -----------------MEEGRRIRKVFIPRDPARVLLTADYSQIELRILAHLSGDPALI 661 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + +DI+ T A+ F P++ V+ E R+ K + + Y G A+ K + Sbjct: 662 TAFRDEQDIHARTAAEVFGVPLEMVTPEMRSRAKAVNFGIIYGISDFGLARDLKVTRAEA 721 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAV 494 +Q++ + + D + AV Sbjct: 722 REYIQRYFARLPGVKEYIDTAIRSARERGYVTTALNRRRPLPELFSANHTVRSFGERAAV 781 Query: 495 KDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + GTA +++K A H +LQ+ +L Sbjct: 782 NTPIQGTAADIIKLAMVKIHARMRERNLKTLMILQVHDEL 821 Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 27/142 (19%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS-------DVKGDCSYLNTATSQLMRE 590 AR + K + + S+R Y + N Sbjct: 719 AEAREYIQRYFARLPGVKEYIDTAIRSARERGYVTTALNRRRPLPELFSANHTVR----- 773 Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFS 643 ++G + N +Q + DI+ M + ++L VHDE++ + P + Sbjct: 774 -SFGERAAVNTPIQGTAADIIKLAMVKIHARMRERNLKTLMILQVHDELLFDVPAEEVCT 832 Query: 644 VGTLC-SLMTKNPSWAKGLPLK 664 V L + M LPL Sbjct: 833 VAPLVKAEMETV------LPLN 848 >gi|314933844|ref|ZP_07841209.1| DNA polymerase I [Staphylococcus caprae C87] gi|313653994|gb|EFS17751.1| DNA polymerase I [Staphylococcus caprae C87] Length = 887 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 85/523 (16%), Positives = 177/523 (33%), Gaps = 65/523 (12%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I + DD + E DL+Q+L D+ + +++ + L IDI Sbjct: 344 ILKFGFYADDS--HVVINAEDIKQYQDLVQWLEDKNTIKTVYDAKK-TYVAAHRLNIDIQ 400 Query: 90 SKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + ++ + + S+ + + + ++ K ++ + KG P + Sbjct: 401 NVQF-DVMLSSYIIDPSRSIDDVKSVVSLYGQNYVKDN-----VSVYGKGKKHQVPEEEV 454 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 HV + K ++EA E + ++ L D E L + + + G D++ + + Sbjct: 455 LNKHVASITEAIANSKPEMEAQLEEYNQVELLKDLELPLAKILSEMEEIGIYTDVEDLKQ 514 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 ++ I ++ L ++I + + L + LF + ++ ++ T +L Sbjct: 515 MENEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVL 573 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + IL S + L + +S D R+ A +TGR S Sbjct: 574 EQLQGEHPIIEHILEYRQLSKLQSTYVEGLQKVISKDQRIHTRFNQTLA-QTGRLSSVDP 632 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGI 384 QN+P + +R ++ ++ AD + I Sbjct: 633 NLQNIPIR------------------------LEEGRKIRKAFKPTDKDSVILSADYSQI 668 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442 E RVLA I ++ +AF NG DI+ T K FN ++V R K + + Y Sbjct: 669 ELRVLAHITQDESLKEAFINGNDIHTATAMKVFNVEANEVDSLMRRQAKAVNFGIVYGIS 728 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAE 479 G ++ + + + + Sbjct: 729 DYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAEGYVETLLHRRRYIPDIT 788 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A ++ V Sbjct: 789 SRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFYEKVKDTNY 831 >gi|320535266|ref|ZP_08035389.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] gi|320147876|gb|EFW39369.1| DNA-directed DNA polymerase [Treponema phagedenis F0421] Length = 942 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 87/560 (15%), Positives = 172/560 (30%), Gaps = 97/560 (17%) Query: 41 PVKLW--DRTEQSAMPSDLLQYLRD-------ETVMCVAHNSLFERILFKKTLGIDIPSK 91 PVKL + Q+ P L + + + + + + HN F+ + + Sbjct: 398 PVKLPPPELQSQAPQPMPLEKAVSELARLWQQKNLTIIMHNGKFDYQAMRTAGVFEKTPC 457 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 T + A + + + L IA D Sbjct: 458 AIFDTMIAAWLLDPDRTSFSLDSLASSLLKLQT-------IAYKDVVPKGKIFSDV---- 506 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 ++ Y D + T + ++ L+P E L L + G + Sbjct: 507 ---PYEQAVAYAAEDADITLQFYEFLLPKLKEYGLFDLFQTLEMPLLPLLAEMEIAGIFL 563 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 + + + E + +E + +I + + L+ LF + ++ Sbjct: 564 KKEELAEFSEELGKEIIVHEREIFDIVGHEFNIA-SPKQLQEVLFTELKLPTGKKTK--T 620 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASR 316 S + LA + ++ A+ KL + L +GR+ + G + Sbjct: 621 GYSTDTSVLEVLASEHVIPAKILEYRALTKLKSTYTDALPALADKNGRVHTSFIQTG-TA 679 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + A +R A GK L Sbjct: 680 TGRLSSRDPNLQNIPIR------------------------DEAGRRIRKAFQAEKGKNL 715 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD A IE +LA ++ + ++AF G D++ T A F PI +V + R I K + Sbjct: 716 ISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFGMPIGEVLPDMRRIAKTIN 775 Query: 437 LALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ---- 488 + Y A + ++ + + F + + + + Sbjct: 776 FGVMYGMSAFRLSNALRIPRRQAADFIETYFKTYSGVHIFMEELKESARRKGYVETLMGR 835 Query: 489 -----------------YPEFAVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLT 525 A+ + G+A ++VK A H+ +L + Sbjct: 836 RRYIYAINSANKLEQAGAERVAINTPIQGSAADIVKTAMLKVQNALQAHKLQAKLLLQVH 895 Query: 526 EGFACVVQEGGSISARRVAN 545 + C E + + + + Sbjct: 896 DELICEAPEKETETVKTLLR 915 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 68/219 (31%), Gaps = 22/219 (10%) Query: 454 HCGLDLQQFSQNVKSTSTFE-DWEQAESHHLWMQDQYPEFAV-----KDKLIGTACELVK 507 G +++ Q K + D+ Q E L Q D TA + Sbjct: 698 EAGRRIRKAFQAEKGKNLISADYAQIELVILAHLSQDKNLVQAFQEGTDVHAATAALIFG 757 Query: 508 KAWRAKHQGVLQLWKDLTEGF-----ACVVQEGGSISARRVANVPRLVMRRHKR---DVH 559 + ++ K + G A + I R+ A+ + + + Sbjct: 758 MPIGEVLPDMRRIAKTINFGVMYGMSAFRLSNALRIPRRQAADFIETYFKTYSGVHIFME 817 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT--ENIVQAISRDILCEGMKNA 617 + S+RR Y + A + + G + +Q + DI+ M Sbjct: 818 ELKESARRKGYVETLMGRRRYIYAINSANKLEQAGAERVAINTPIQGSAADIVKTAMLKV 877 Query: 618 TKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 ++L VHDE++ E P+ +V TL Sbjct: 878 QNALQAHKLQAKLLLQVHDELICEAPEKETETVKTLLRQ 916 >gi|226950437|ref|YP_002805528.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] gi|226844476|gb|ACO87142.1| DNA polymerase I [Clostridium botulinum A2 str. Kyoto] Length = 875 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 90/583 (15%), Positives = 185/583 (31%), Gaps = 105/583 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58 L + Y E I L + YA + V D + Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCR 375 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + + + +N+ R + +K LGID LA P + +L Sbjct: 376 EMFESKEIKKITYNAKNPRTILRK-LGIDFN--GIKFDINLAAYLIDPVRKEYEISSLAS 432 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + F K + +++ E +D + L+K Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVL-EEKIKDQDMEELLYK--- 476 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E+ L + G+++D D++L+L++ E + +I +++ + Sbjct: 477 ----VEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEKF-NINSP 531 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L D I + + L Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A+ DG++ + TGR S QN+P + Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T + Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 + F PI++V+ R+ K + + Y G ++ + + + + Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ +S + ++ A+ + G+A +++K A Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 H+ +LQ+ +L E ++ Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELERIKALVKK 849 >gi|258648865|ref|ZP_05736334.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] gi|260850887|gb|EEX70756.1| DNA polymerase type I [Prevotella tannerae ATCC 51259] Length = 921 Score = 243 bits (620), Expect = 8e-62, Method: Composition-based stats. Identities = 89/527 (16%), Positives = 159/527 (30%), Gaps = 92/527 (17%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLALNFSEHL 122 V+ V N ++ + + K + ++L+ P + LA + + Sbjct: 405 ADVLIVGQNLKYDLTVLA---SYGVKPKGRLFDTMLSHYVVQPELAHNMDYLASVYLNYR 461 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--- 179 + LI +G + D EY D + T L L Sbjct: 462 PI--PIEQLIGPKGRGQRNMGDLDPKDV---------FEYACEDADVTLRLMAPLEKAMR 510 Query: 180 -------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + + G +D + + ++ KL+ +I +L Sbjct: 511 ENGVEQIFYDIEMPLMPVLARMERNGVCLDTNALQEISSEFTARMVKLEAEIYQLAGHPF 570 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + LF ID + + S + +L+ + + + KL Sbjct: 571 MI-TSPKQVGEVLFGELKIDEKAKKTKSGQYSTSEEVLVRLSHKHEIVGKILAHRGLKKL 629 Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + V+ G L T + TGR S QN+P Sbjct: 630 LSTYVEALPKLVNPQTGHLHTTFN-QAVTSTGRLSSSNPNLQNIP--------------- 673 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 G +R I G AD + IE R++A ++ + I+AF GE Sbjct: 674 ---------VRGEDGREIRKAFIPEAGDVFFSADYSQIELRIMAHLSKDPHLIEAFKKGE 724 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T A+ F + +VS+++R K + Y G A+ + + + Sbjct: 725 DIHAATAARIFKKDLSEVSRDERRKAKTANFGIIYGISAFGLAERMDVSRTEARELIDNY 784 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + D SH+ ++ AV + GT Sbjct: 785 FSTYPKVKEYMDSSIEKARRRGYIETAFGRRQYLADINSHNAVVRGYAERVAVNAPIQGT 844 Query: 502 ACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSI 538 A +++K A Q +LQ+ +L E Sbjct: 845 AADIIKLAMIRIDQRLRAEGLKTKMILQVHDELNFSIPPAELECAKA 891 >gi|219815990|gb|ACL37108.1| DNA polymerase I [uncultured bacterium fCS1] Length = 962 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 91/532 (17%), Positives = 172/532 (32%), Gaps = 97/532 (18%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--KNACLALNFS 119 + ++ V N ++ ++ K G ++ I ++LA P + A Sbjct: 441 NNASITWVGQNIKYDLLMLK-WYGFELQGN--IFDTMLAHYVIEPDGKSSMDLLSAKFLG 497 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + E LI + KG + + + EY D + T +L +P Sbjct: 498 YQPVSITE---LIGKKGKGQGNMRDIEIEKI---------KEYAAEDADITLQLKNVFLP 545 Query: 180 LS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L + E L + + G RID + ++ ++ + ++ + + Sbjct: 546 LIKKEQVEKVFAEVENPLVKVLTNMEFEGIRIDEQFLKDYSIVLQKDAMEFEQSVYEQAG 605 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLAS 284 + L LF +D T + + +LA IL+ Sbjct: 606 VKFNLA-SPKQLGEVLFDKMKLDPKAKKTKTGQYATGEDVLAKLANQHKICNDILSFREL 664 Query: 285 SGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQ 342 + ++ L + ++ GR+ + + TGR S QN+P R ER E Sbjct: 665 TKLKNTYVDALPQLINSKTGRVHTSYA-QAVAVTGRLSSTNPNLQNIPVRTERGRE---- 719 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I LV AD + IE R++A I+ + +A Sbjct: 720 ---------------------IRKAFIPRDENHVLVSADYSQIELRIVAAISADVNMCEA 758 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F G+DI+ T AK FN +V+KE R K + + Y G A + Sbjct: 759 FKTGKDIHTATAAKVFNVEESEVTKEMRYKAKSVNFGIIYGQGAFGLADNLGISRTEAKA 818 Query: 458 DLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKD 496 + + + + + D + + ++ A+ Sbjct: 819 IIDNYKKQFPNIQQYMDNTINFAKETGYVETLMGRKRWLKDINSANFTVRGFAERNAINS 878 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSI 538 + GTA +++K A K + +LQ+ +L E Sbjct: 879 PIQGTAADMIKLAMIKIDAAFKAHHFKSKMLLQVHDELVFDVLKEELEKVKP 930 >gi|291059523|gb|ADD72258.1| DNA polymerase I (POL I) [Treponema pallidum subsp. pallidum str. Chicago] Length = 1015 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 95/559 (16%), Positives = 167/559 (29%), Gaps = 92/559 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112 L + DET+ V HN F+ + + + + T V A + Sbjct: 494 HQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDV 553 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A F EE A F PY+C Y D + T Sbjct: 554 LAASFFQIRTITFEEVVAKGQTFA-----HVPYECA-----------VRYAAEDADITFR 597 Query: 173 LFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L + E L + + + G + D+V +L + ++ + Sbjct: 598 LYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEH 657 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 DI L + L+ LF + + T HS + +LA+ + Sbjct: 658 DIFSLAGHEF-NIGSPKQLQTVLFQELHLPPGK--KNTQGYSTDHSVLKKLARKHPIAEK 714 Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL +L++ GR+ + G + TGR S QN+P + Sbjct: 715 ILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIG-TATGRLSSRNPNLQNIPIKS--- 770 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R A+ G +L+ AD IE VLA ++ + Sbjct: 771 ---------------------TEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRN 809 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMAS 453 + AF DI+ T A FN ID V R I K + + Y A K Sbjct: 810 LLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQK 869 Query: 454 HCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEF 492 + ++ + F +S + + + Sbjct: 870 EAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERM 929 Query: 493 AVKDKLIGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 A+ ++ +A ++VK A A+ QL + + + + + Sbjct: 930 ALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFA 989 Query: 547 PRLVMRRHKRDVHIVLPSS 565 + I + S Sbjct: 990 EMEHAVELSIPLRIHVESG 1008 Score = 40.5 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLT 627 G Y+ T S+ ER ++ N +Q+ + DI+ M + ++L Sbjct: 907 GRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQ 966 Query: 628 VHDEIVSETPDTPYFSVGTL 647 VHDE++ E P V + Sbjct: 967 VHDELIFEAPAAETAIVKEI 986 >gi|15639099|ref|NP_218545.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025339|ref|YP_001933111.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] gi|6166143|sp|P74933|DPO1_TREPA RecName: Full=DNA polymerase I; Short=POL I gi|3322368|gb|AAC26553.1| DNA polymerase I (polA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017914|gb|ACD70532.1| DNA polymerase I [Treponema pallidum subsp. pallidum SS14] Length = 997 Score = 243 bits (619), Expect = 9e-62, Method: Composition-based stats. Identities = 95/559 (16%), Positives = 167/559 (29%), Gaps = 92/559 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112 L + DET+ V HN F+ + + + + T V A + Sbjct: 476 HQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDV 535 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A F EE A F PY+C Y D + T Sbjct: 536 LAASFFQIRTITFEEVVAKGQTFA-----HVPYECA-----------VRYAAEDADITFR 579 Query: 173 LFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L + E L + + + G + D+V +L + ++ + Sbjct: 580 LYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEH 639 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 DI L + L+ LF + + T HS + +LA+ + Sbjct: 640 DIFSLAGHEF-NIGSPKQLQTVLFQELHLPPGK--KNTQGYSTDHSVLKKLARKHPIAEK 696 Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL +L++ GR+ + G + TGR S QN+P + Sbjct: 697 ILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIG-TATGRLSSRNPNLQNIPIKS--- 752 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R A+ G +L+ AD IE VLA ++ + Sbjct: 753 ---------------------TEGRKIRQAFQATVGHELISADYTQIELVVLAHLSQDRN 791 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMAS 453 + AF DI+ T A FN ID V R I K + + Y A K Sbjct: 792 LLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQK 851 Query: 454 HCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEF 492 + ++ + F +S + + + Sbjct: 852 EAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERM 911 Query: 493 AVKDKLIGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 A+ ++ +A ++VK A A+ QL + + + + + Sbjct: 912 ALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFA 971 Query: 547 PRLVMRRHKRDVHIVLPSS 565 + I + S Sbjct: 972 EMEHAVELSIPLRIHVESG 990 Score = 40.5 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLT 627 G Y+ T S+ ER ++ N +Q+ + DI+ M + ++L Sbjct: 889 GRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQ 948 Query: 628 VHDEIVSETPDTPYFSVGTL 647 VHDE++ E P V + Sbjct: 949 VHDELIFEAPAAETAIVKEI 968 >gi|225570709|ref|ZP_03779732.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] gi|225160536|gb|EEG73155.1| hypothetical protein CLOHYLEM_06810 [Clostridium hylemonae DSM 15053] Length = 871 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 68/372 (18%), Positives = 131/372 (35%), Gaps = 58/372 (15%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 +D E L + G RI+ + + E + + ++L+++I + + Sbjct: 472 TDIEMPLVFTLYDMEQNGVRIEAEALKFYGEQLGIKIEELEKEIYEAAGEEF-NINSPKQ 530 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295 L + LF G+ ++ + + +LA D + + KL + L Sbjct: 531 LGVILFDKMGLKGGKKTK--TGYSTAADVLDKLAPDYPVVAQILEYRQLTKLKSTYADGL 588 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 S +S DGR+ G + TGR S QN+P Sbjct: 589 SNYISGDGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------ 623 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R I +G + AD + IE RVLA +G++ I A+ +DI+ T ++ Sbjct: 624 VRMELGRLIRKVFIPEDGYVFIDADYSQIELRVLAHCSGDEQLINAYKEQKDIHRITASQ 683 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+ P +V+ QR K + + Y G ++ + + + Sbjct: 684 VFHVPFGEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFKTYPGIKL 743 Query: 472 FEDWEQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAW 510 F D A + + +MQ + A+ + GTA +++K A Sbjct: 744 FLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 803 Query: 511 RAKHQGVLQLWK 522 ++ + + Sbjct: 804 IGVNRRLKEKHM 815 >gi|239616633|ref|YP_002939955.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] gi|239505464|gb|ACR78951.1| DNA polymerase I [Kosmotoga olearia TBF 19.5.1] Length = 896 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 113/686 (16%), Positives = 211/686 (30%), Gaps = 173/686 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR--------TEQSAMPS 55 + ID+ET S P +A I + A D ++ + Sbjct: 324 ISIDLETSSLDP----------HEAKIVGISVAIKDGEGFYIPVNHESSDWQADEKQVLL 373 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNAC 113 L + L D V N F+ + +K I +++A P S Sbjct: 374 RLKELLEDSGTKIVGQNLKFDYEILEKH---GIEPVVPHFDTMIAAYLLNPDSRRFNLDD 430 Query: 114 LALNFSEH----LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LAL F + +++ L +F K S+ + +Y D + Sbjct: 431 LALKFLGYRTTSFSELMNKNQLKDQFEKVSV----------------EEAAKYSVEDADI 474 Query: 170 TRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L++ L E +L + + G ++++ + L E + K Sbjct: 475 ALRLYRVLSKKLYESDLDNIFHKIEMELIPVLAELELNGVYMNVESLKNLSEEYEKRLGK 534 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAK 275 + E++ +L + + LF G++ ++ T ++L Sbjct: 535 IREELFELAGEPF-NPNSPTQVSKILFEKLGLNPPKKTKHGAYSTSAAVLEELVNEHPII 593 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L+ L+TL V+ GR+ + G + TGR S QNLP Sbjct: 594 QKLLDYRKYQKLKSTYLDTLPTLVNPVTGRIHASYHQTG-TGTGRLSSSNPNMQNLP--- 649 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIA 393 G +R C++ K++ AD + IE RVLA + Sbjct: 650 ---------------------IKGEEGKEIRKCVVPQKSDWKIISADYSQIELRVLAHFS 688 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 ++ I AF NGED++ T ++ + + V+ E R +GK++ ++ Y Sbjct: 689 EDERLISAFKNGEDVHALTASRLYGVSVKDVTPEMRQVGKMVNFSIIYGIS--------- 739 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + L ++ E + + Sbjct: 740 ----------------------PYGLARRLKIKTHIAENMISNYF-------------NA 764 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 + GV + V+ E R + + + + + R+ + Sbjct: 765 YPGVRKF-------INEVIHEAKEKGYVRTLFGRKREIPHFRTRNKMKIQEGERIAINTP 817 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 +Q + DI+ M K +L Sbjct: 818 ----------------------------IQGTAADIMKLAMIKIHKMVKEEGLEAFPILQ 849 Query: 628 VHDEIVSETPDTPYFSVGTLCSLMTK 653 VHDE+V E P T V +C ++T+ Sbjct: 850 VHDELVFEAPATE---VDRVCDILTR 872 >gi|228475217|ref|ZP_04059943.1| DNA polymerase I [Staphylococcus hominis SK119] gi|228270828|gb|EEK12230.1| DNA polymerase I [Staphylococcus hominis SK119] Length = 878 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 84/518 (16%), Positives = 182/518 (35%), Gaps = 63/518 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + +D E + D P +L+++L +E V +++ ++ + ++I Sbjct: 334 DILKFGF-YDKERYIVVDADNIKDYP-ELIKWLENENSKKVVYDAKKTFVIAHR---LNI 388 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + ++LA PS + ++ + H T ++E ++ + KG P Sbjct: 389 NIQNIVFDAMLASYIFDPSRTIDDVYSVVTNYHQTYVKED---VSIYGKGKKRHVPDTEI 445 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 H+ + + K +E E +++ L D E L + + + G D++ + Sbjct: 446 LNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQH 505 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 +Q+ + ++ + L + I + L + LF + ++ ++ T +L Sbjct: 506 MQQELQEKLELLVQRIHDAAGEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVL 564 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + IL + + L + +S+D R+ A +TGR S Sbjct: 565 EQLQNEHPIINDILEYRQLAKLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGRLSSVDP 623 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P + +R S ++ AD + I Sbjct: 624 NLQNIPIR------------------------LEEGRKIRKAFKPSSEDSVILSADYSQI 659 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442 E RVLA I +D +AF +G+DI+ T K F ++V+ R K + + Y Sbjct: 660 ELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYGIS 719 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAE 479 G ++ + + + + + Sbjct: 720 DYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRRRYIPDIT 779 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 S + ++ A+ + G+A +++K A + V Sbjct: 780 SRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQV 817 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 99/307 (32%), Gaps = 41/307 (13%) Query: 384 IEARVLAWI--AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK------VSKEQRAIGKVM 435 +E R LA + + K +N + I+ FN + + V + + Sbjct: 578 LEYRQLAKLQSTYVEGLQKVISNDKRIHTR-----FNQTLAQTGRLSSVDPNLQN----I 628 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + L + +S + L ++ + ++ Q A Sbjct: 629 PIRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATA 688 Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 K+ G E V R + + G++ +++ A+ + Sbjct: 689 RKVFGVEAEEVTDLMRRQAKAVNFGIV---YGISDYGLSQSLNITRKEAKIFIDDYLASF 745 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 K+ + ++ ++ Y + Y+ TS+ R + + N +Q + DI Sbjct: 746 PGVKQYMSDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADI 805 Query: 610 LCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGT----LCSLMTKNPSWAK 659 + M K Y ++L VHDE++ E P + V + +M Sbjct: 806 IKLAMVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSE---VEEFSLFVEDIMEHALD--L 860 Query: 660 GLPLKAE 666 +PLK + Sbjct: 861 DVPLKVD 867 >gi|91762671|ref|ZP_01264636.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] gi|91718473|gb|EAS85123.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1002] Length = 924 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 187/563 (33%), Gaps = 100/563 (17%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +L ID ET S L + + +A + + ++ + L Sbjct: 345 ELAIDTETSSLDAHQTDLVGISLSTKIGKACYIPIGHKFKG-------CLKKETVIKKLK 397 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D++V + N F+ I+ K GI++ S G + ++ Sbjct: 398 PLLEDKSVKKIGQNIKFDFIVLYKH-GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHL 456 Query: 119 SEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +E GK I F +D EY D + T L+ Sbjct: 457 QHKTISFKEIVGTGKKEIN-FSDVELDKAM----------------EYAAEDADITYRLY 499 Query: 175 K------RLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 K +L L++ E+ L + + G +ID + L E ++ KL++++ Sbjct: 500 KIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEV 559 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA-KDLILNRLA 283 K++ + L ++ I ++ + + S + LA K +L Sbjct: 560 FKISKKKFNIA-SPKQLGEIIYNDLKIAVLKKTRKG-SFATNASVLEDLAFKGHEFPKLI 617 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L E ++ + + T A+ TGR + QN+P + Sbjct: 618 LDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSED-- 675 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G L+ AD IE R+LA +A Sbjct: 676 ----------------------GKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKEL 713 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 KAF+N EDI+ T ++ FN I KV ++ R K + + Y G AK Sbjct: 714 KKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHE 773 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 L + + D + + +++ A Sbjct: 774 ADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAA 833 Query: 494 VKDKLIGTACELVKKAWRAKHQG 516 + + G+A E+++ A ++ Sbjct: 834 INAPIQGSASEIMRLAMIRLNKK 856 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 9/91 (9%) Query: 566 RRLVYS-DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKNGY- 622 R+ Y ++ G S+ N + R + + N +Q + +I+ M K Sbjct: 800 RKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGSASEIMRLAMIRLNKKFES 859 Query: 623 ------DIVLTVHDEIVSETPDTPYFSVGTL 647 I+L +HDE++ E P ++ + Sbjct: 860 IKNNKSKILLQIHDELIFEVPVKEVKNITEI 890 >gi|314936207|ref|ZP_07843554.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] gi|313654826|gb|EFS18571.1| DNA polymerase I [Staphylococcus hominis subsp. hominis C80] Length = 878 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 84/518 (16%), Positives = 182/518 (35%), Gaps = 63/518 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + +D E + D P +L+++L +E V +++ ++ + ++I Sbjct: 334 DILKFGF-YDKERYIVVDADNIKDYP-ELIKWLENENSKKVVYDAKKTFVIAHR---LNI 388 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + ++LA PS + ++ + H T ++E ++ + KG P Sbjct: 389 NIQNIVFDAMLASYIIDPSRTIDDVYSVVTNYHQTYVKED---VSIYGKGKKRHVPDTEI 445 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 H+ + + K +E E +++ L D E L + + + G D++ + Sbjct: 446 LNTHIASITKSIDAVKPLMEKELESHQQMNLLKDLELPLARILSKMEEIGIYTDVNDLQH 505 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 +Q+ + ++ + L + I + L + LF + ++ ++ T +L Sbjct: 506 MQQELQEKLELLVQRIHDAAGEEF-NINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVL 564 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 + IL + + L + +S+D R+ A +TGR S Sbjct: 565 EQLQNEHPIINDILEYRQLAKLQSTYVEGLQKVISNDKRIHTRFNQTLA-QTGRLSSVDP 623 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P + +R S ++ AD + I Sbjct: 624 NLQNIPIR------------------------LEEGRKIRKAFKPSSEDSVILSADYSQI 659 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442 E RVLA I +D +AF +G+DI+ T K F ++V+ R K + + Y Sbjct: 660 ELRVLAHITQDDSLKEAFIHGQDIHTATARKVFGVEAEEVTDLMRRQAKAVNFGIVYGIS 719 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAE 479 G ++ + + + + + Sbjct: 720 DYGLSQSLNITRKEAKIFIDDYLASFPGVKQYMSDIVKDAKANGYVETLLHRRRYIPDIT 779 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 S + ++ A+ + G+A +++K A + V Sbjct: 780 SRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDKQV 817 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 47/307 (15%), Positives = 99/307 (32%), Gaps = 41/307 (13%) Query: 384 IEARVLAWI--AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK------VSKEQRAIGKVM 435 +E R LA + + K +N + I+ FN + + V + + Sbjct: 578 LEYRQLAKLQSTYVEGLQKVISNDKRIHTR-----FNQTLAQTGRLSSVDPNLQN----I 628 Query: 436 ELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVK 495 + L + +S + L ++ + ++ Q A Sbjct: 629 PIRLEEGRKIRKAFKPSSEDSVILSADYSQIELRVLAHITQDDSLKEAFIHGQDIHTATA 688 Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 K+ G E V R + + G++ +++ A+ + Sbjct: 689 RKVFGVEAEEVTDLMRRQAKAVNFGIV---YGISDYGLSQSLNITRKEAKIFIDDYLASF 745 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 K+ + ++ ++ Y + Y+ TS+ R + + N +Q + DI Sbjct: 746 PGVKQYMSDIVKDAKANGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSAADI 805 Query: 610 LCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGT----LCSLMTKNPSWAK 659 + M K Y ++L VHDE++ E P + V + +M Sbjct: 806 IKLAMVEFDKQVQHTSYKAKLLLQVHDELIFEVPKSE---VEEFSLFVEDIMEHALD--L 860 Query: 660 GLPLKAE 666 +PLK + Sbjct: 861 DVPLKVD 867 >gi|89100389|ref|ZP_01173253.1| DNA polymerase I [Bacillus sp. NRRL B-14911] gi|89084908|gb|EAR64045.1| DNA polymerase I [Bacillus sp. NRRL B-14911] Length = 877 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 86/503 (17%), Positives = 169/503 (33%), Gaps = 85/503 (16%) Query: 53 MPSDLLQYLRDETVMCVA---------HNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 +P++L L ET A +++ + + I K ++A Sbjct: 347 IPAEL--ALSSETFKKWAEDESKKKIVYDAKRTEVSLRHH---GIHLKGVEFDLLIASYI 401 Query: 104 GLPSS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 PS + ++ T A + KG+ P A H+ Sbjct: 402 INPSESIEDFASVAKRHGYNGVQTDD-------AVYGKGAKRKIPAQEELAGHLARKAAA 454 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 E + +E + ++ D E L L+ + +G ++DL+ + + E I Q+ Sbjct: 455 LEALRDKLEDELKENRQYELFYDLEMPLSLILADMESQGVKVDLERLQAMGEQINQKLGD 514 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 ++E I +L + L + LF G+ V ++ S + +L + Sbjct: 515 IEERIHELAGEAF-NINSPKQLGVILFEKLGLPPVKKTKTG--YSTSADVLEKLEDKHEI 571 Query: 280 NRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 R + KL + L G++ ++TGR S QN+P + Sbjct: 572 IREILQYRQLGKLQSTYIEGLLKVTDKKTGKVHTRFN-QALTQTGRLSSTDPNLQNIPIR 630 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWI 392 +R + S G + AD + IE RVLA I Sbjct: 631 ------------------------LEEGRKIRQAFVPSEKGWVIFAADYSQIELRVLAHI 666 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 AG++ I+AF +D++ T + F+ +V+ R K + + Y G ++ Sbjct: 667 AGDEKLIEAFREDQDVHTKTAMEVFHVSEGEVTSNMRRHAKAVNFGIVYGISDYGLSQSL 726 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487 G + ++ ++ + D + S + ++ Sbjct: 727 GITRKEAGQFIDRYLESYPGVREYMDDIIQEAKQKGYVSTLLHRRRYLPEITSRNFNLRS 786 Query: 488 QYPEFAVKDKLIGTACELVKKAW 510 A+ + G+A +++KKA Sbjct: 787 FAERTAMNTPIQGSAADVIKKAM 809 >gi|86605248|ref|YP_474011.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] gi|86553790|gb|ABC98748.1| DNA polymerase I [Synechococcus sp. JA-3-3Ab] Length = 928 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 102/576 (17%), Positives = 179/576 (31%), Gaps = 97/576 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAMPSDLL 58 D ET S L +G + D WD +QS P Sbjct: 364 DTETTSLDPRDAQLVGIGCCWSERDVAYLPLGHRQGSNLD------WDLVKQSLQPIW-- 415 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACL 114 D N ++ +F+ I + +LA P + A Sbjct: 416 ---EDPNRPKSLQNCKYDLSIFRAH---SIRLQGIQFDPMLASYVLNPEASHNLADLAAS 469 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN + GKA D P A+ + E ++ Sbjct: 470 YLNLPTTSYEKLLGKAE------SLADLPIAKVAEYCGTDAYCAYRLV-PILTEKLQQTD 522 Query: 175 KRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 RL L E L + + + G RID + + + + + +E L++ + Sbjct: 523 PRLWNLFVQVELPLAHVLEEMEWVGIRIDTEFLRQFSQELEKELHSLEQKAYAQAGEVF- 581 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + L LF +D+ + S + +L D + + KL Sbjct: 582 NLNSPKQLGSLLFEKLKLDVRKTRKTATGYSTDASVLEKLEGDHPVIETILQYRTLAKLK 641 Query: 293 ----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L V D GR+ + + TGR S QN+P + Sbjct: 642 STYVDALPALVRRDTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIRS------------- 687 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R + G L AD + IE R+LA ++ E I+ F +GED Sbjct: 688 -----------EFSRRIRQAFVPQEGWLLASADYSQIELRILAHLSQEPTLIECFRSGED 736 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFS 463 ++ T F +V+ E+R + K + + Y GA+ F A + L++F+ Sbjct: 737 VHTLTARLLFEK--QEVTSEERRLAKTINYGVIYGMGAQRFARTAGVSLAEAKEFLRRFN 794 Query: 464 QNVKSTSTFEDWEQAESHH-------LWMQDQYP--------------EFAVKDKLIGTA 502 + + +A L + +P AV + G+A Sbjct: 795 ERYAGVFAYLRATEAFVEKHGYVETLLGRRRYFPNLSQLSGHRKQAELRAAVNAPIQGSA 854 Query: 503 CELVKKAWRAKHQG----VLQLWKDLTEGFACVVQE 534 +++K A + +L + + V+ Sbjct: 855 SDIIKVAMVRLQEKLQNFRSRLLLQVHDELVFEVEP 890 >gi|255524969|ref|ZP_05391916.1| DNA polymerase I [Clostridium carboxidivorans P7] gi|255511341|gb|EET87634.1| DNA polymerase I [Clostridium carboxidivorans P7] Length = 880 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 89/507 (17%), Positives = 170/507 (33%), Gaps = 88/507 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L ++ + V+HN +FKK + I + +A + SS L Sbjct: 379 LKDIFENDKIEKVSHNIKVPYTVFKK---MGINFTSVKFDTEIAAYL-IDSSRGEYGLNS 434 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 ++L M +G+ I + +F K+ + + Sbjct: 435 IIQDYLKIMLQGEE-------DEIRVKENSLLK-------DVFETLNKQ--IKELNMEEL 478 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E+ L L+ + G+++D + +L E E KL +DI L + + Sbjct: 479 LY---EVEQPLTLVLAAMEYEGFKVDNVKLEELGEKFKIEIDKLKKDIYGLAEEEF-NIN 534 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF + ++ ++ T +L + I + + Sbjct: 535 SPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEQLLDKHPIIEKITYYRQFTKLYSTYIE 594 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + DG++ + + TGR S QN+P + Sbjct: 595 GLKAVIDKDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY------------------- 634 Query: 354 ADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + ++ AD + IE RVLA IA ++ I AF N DI+ T Sbjct: 635 -----EMGREIRKVFVPEDENSIILSADYSQIELRVLAHIADDENLIDAFLNHSDIHTKT 689 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468 ++ F PID+V+K QR+ K + + Y G AK K + + + Sbjct: 690 ASEVFKVPIDQVTKLQRSNAKAVNFGIVYGIGDFSLAKDLKISRKEAKNYIDTYFERYPG 749 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + D + ++ ++ A+ + G+A +++K Sbjct: 750 VKRYMDNVIKQAEDNLYVTTIMNRRRFIPEIKNSKKMVKAFGERLAMNTPIQGSAADIIK 809 Query: 508 KAWRA----------KHQGVLQLWKDL 524 + K + +LQ+ +L Sbjct: 810 MSMVNVYNILKSKNLKSKVILQVHDEL 836 Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 10/76 (13%) Query: 584 TSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSET 636 + ++++ +G +L N +Q + DI+ M N ++L VHDE++ Sbjct: 783 SKKMVK--AFGERLAMNTPIQGSAADIIKMSMVNVYNILKSKNLKSKVILQVHDELILNV 840 Query: 637 PDTPYFSVGTLCS-LM 651 V L M Sbjct: 841 YKDELEEVKELVKNQM 856 >gi|42527145|ref|NP_972243.1| DNA polymerase I [Treponema denticola ATCC 35405] gi|41817569|gb|AAS12154.1| DNA polymerase I [Treponema denticola ATCC 35405] Length = 936 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 101/619 (16%), Positives = 191/619 (30%), Gaps = 119/619 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-------KLWDRTEQSAMPSDL 57 D ET S PL A + + A + + E++ Sbjct: 362 SYDCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAF 411 Query: 58 LQY------LRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSS-- 108 L D + + HN F+ + L I + + T + A S Sbjct: 412 KDAKKAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGISANLF-DTMIAAWLLDPARSSY 470 Query: 109 ----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L + L + +++G+ + Y Sbjct: 471 GMDKLAESILGVKTIRFKDLVKQGQNFSDI--------------------PLKEACPYAA 510 Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T +K+ +PL D E + L + +G + + + + + Sbjct: 511 EDADITFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELG 570 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271 +E + ++DI +L + L+ LF + ++ T S+L + Sbjct: 571 KELEDCEKDIYRLVGHEFNIA-SPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASE 629 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 IL+ A + +TL + +GR+ + G + TGR S QN+P Sbjct: 630 DPVPAKILDYRALAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIP 688 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + G +R A G+ L+ AD + IE +LA Sbjct: 689 IR------------------------GNEGRKIREAFQAEKGRVLISADYSQIELVILAH 724 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKV 447 ++ + ++AF G D++ T + F I VS++ R I K + + Y A Sbjct: 725 LSKDQNLVEAFNTGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAFRLASS 784 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ------------------- 488 + ++ + S F E+ + Sbjct: 785 LRIPRKRADEFIKAYFATYSGVSGFMANVCQEAEQRGYVETLMGRRRYLPAINSKNKVEK 844 Query: 489 --YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV--A 544 AV + GTA ++VK A + + + + L V + I A Sbjct: 845 AGAERIAVNTPIQGTAADIVKLAMLEVDKALKK--QKLDASILLQVHDELIIEAAESERE 902 Query: 545 NVPRLVMRRHKRDVHIVLP 563 V LV + + + + +P Sbjct: 903 KVMSLVKEKMEGVIKLSVP 921 >gi|194335777|ref|YP_002017571.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] gi|194308254|gb|ACF42954.1| DNA polymerase I [Pelodictyon phaeoclathratiforme BU-1] Length = 944 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 95/553 (17%), Positives = 180/553 (32%), Gaps = 93/553 (16%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITL--CAYAWDDEPVKLWDRTEQSAMPSD--- 56 + +D ET S + L + A + + + SA+ D Sbjct: 371 RHIAVDTETTS------------LDTFEAELAGISIAVETGKARFISFAQ-SALDRDKTV 417 Query: 57 --LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-----SSL 109 L L + ++ + N ++ ++ KK GI++ + T + + L Sbjct: 418 EILKPLLENPSLPKIGQNLKYDMLVLKKY-GIELSPVAF-DTMLASYVLNPEEKHNLDDL 475 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L + + GK F Y C A+ + ++ ++ Sbjct: 476 AAHHLGYRTTTFDELVGTGKTKQHIFEVDPEKLSDYACQDADLALQLE---GVFRKKLDG 532 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 EL + E L + + G ID + K E + +E + L E I Sbjct: 533 ETELLWLC---ENIEFPLVTVLAEMEYAGICIDTHHLEKASERVKKELELLTETIYAAAG 589 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASS 285 + L LF + + ++ ++ + + + +A+DL+ R + Sbjct: 590 SAF-NIDSPKQLAHILFDLLALPPKKRTKTGYSTNVEVLEELATLFPIARDLLEYR-SLQ 647 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 ++ L + V+ GRL T + + TGR S QN+P Sbjct: 648 KLKSTYIDALPKMVNPLTGRLHTTFNQF-ITATGRLSSSNPNLQNIP------------- 693 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 I PLG +R I S L+ AD + IE R+ A I+G+ ++AF Sbjct: 694 --------IRSPLG---KEIRRAFIPSTPENWLLSADYSQIELRIAAEISGDPQLLEAFR 742 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 N EDI+ T F+T D+++ + R K + + Y G ++ + Sbjct: 743 NREDIHTATAKVIFDT--DEITSDMRRKAKEVNFGVLYGIMPFGLSRRLNIPQKEAKAII 800 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + S + ++ A+ + Sbjct: 801 DTYISKYPGLFKALQEIIVTGREKGYVTTILGRRRYLADLNSRNTNLKKAAERAAMNTPI 860 Query: 499 IGTACELVKKAWR 511 GTA +++K A Sbjct: 861 QGTAADIIKCAMN 873 >gi|71082906|ref|YP_265625.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] gi|71062019|gb|AAZ21022.1| DNA polymerase I [Candidatus Pelagibacter ubique HTCC1062] Length = 924 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 103/563 (18%), Positives = 187/563 (33%), Gaps = 100/563 (17%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +L ID ET S L + + QA + + ++ + L Sbjct: 345 ELAIDTETSSLDAHQTDLVGISLSTKIGQACYIPIGHKFKG-------CLKKETVIKKLK 397 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L D++V + N F+ I+ K GI++ S G + ++ Sbjct: 398 PLLEDKSVKKIGQNIKFDFIVLYKQ-GINMNSMEDTMLMSYVLDAGKNRHNMDTLSEIHL 456 Query: 119 SEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +E GK I F +D EY D + T L+ Sbjct: 457 QHKTISFKEIVGTGKKEIN-FSDVELDKAM----------------EYAAEDADITYRLY 499 Query: 175 K------RLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 K +L L++ E+ L + + G +ID + L E ++ KL++++ Sbjct: 500 KIFSKNLKLEKLTNIYEIFEKPLIKILAFMEIEGIKIDNKFLKVLSEKFEKKISKLEKEV 559 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA-KDLILNRLA 283 K++ + L ++ I ++ + + S + LA K +L Sbjct: 560 FKISKKEFNIA-SPKQLGEIIYNDLKIAVLKKTRKG-SFATNASVLEDLAFKGHEFPKLI 617 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L E ++ + + T A+ TGR + QN+P + Sbjct: 618 LDWRQVSKLKNTYSDALPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSED-- 675 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA G L+ AD IE R+LA +A Sbjct: 676 ----------------------GKDIRKAFIAEKGFTLISADYNQIEMRILADLAEVKEL 713 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 KAF+N EDI+ T ++ FN I KV ++ R K + + Y G AK Sbjct: 714 KKAFSNNEDIHSLTASQVFNVDIKKVDQDMRRKAKAINFGIIYGISQYGLAKQINVSNHE 773 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 L + + D + + +++ A Sbjct: 774 ADEFLNAYFLKFPEIKIYMDNTIKFCRKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAA 833 Query: 494 VKDKLIGTACELVKKAWRAKHQG 516 + + G+A E+++ A ++ Sbjct: 834 INAPIQGSASEIMRLAMIRLNKK 856 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 9/91 (9%) Query: 566 RRLVYS-DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKNGY- 622 R+ Y ++ G S+ N + R + + N +Q + +I+ M K Sbjct: 800 RKSGYVTNIFGRRSHFNGINDKNFNVRNFQERAAINAPIQGSASEIMRLAMIRLNKKFES 859 Query: 623 ------DIVLTVHDEIVSETPDTPYFSVGTL 647 I+L +HDE++ E P ++ + Sbjct: 860 IKNNKSKILLQIHDELIFEVPVKEVKNITEI 890 >gi|291550064|emb|CBL26326.1| DNA polymerase I [Ruminococcus torques L2-14] Length = 871 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 80/542 (14%), Positives = 175/542 (32%), Gaps = 99/542 (18%) Query: 32 LCAYAWDDEPVKL-WDRTEQSAMPSDL---LQYLRDETVMCVAHNSL----FERILFKKT 83 L A+A V L ++ + +P D+ +YL ++H + F K+ Sbjct: 336 LFAHASGYGRVSLCYEAEKIVTIPCDMDADFEYLT----GKLSHLAKSVKRFSMCGLKEY 391 Query: 84 L-GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 L + + +++A P + ++E + C + + Sbjct: 392 LEWLPELTSENGFDAIVAAYLLNPLKNDYNAEDVAREHLNLLIDEKLDEGTKSCYEAYTA 451 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 ++ +F + + E L + G +++ Sbjct: 452 YACVPVLEKKLEENGMFCLFN------------------EIEMPLVFTLYDMEQAGVKVE 493 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + + + E + +L+++I ++ + L + LF + ++ Sbjct: 494 GEELKRYGEELGARIVELEKEIYEMAGEEF-NINSPKQLGVILFEKLEMPHAKKTKTG-- 550 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRT 317 + + +LA + + + KL + L+ + DGR+ + T Sbjct: 551 YSTAADVLDKLAPEYPIVAKILEYRQLAKLKSTYADGLANYIGMDGRIHSKFN-QTITAT 609 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P +R + G V Sbjct: 610 GRISSTEPNLQNIP------------------------VRMELGRLIRKVFVPKEGCVFV 645 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+LA +G++ I+A+ DI+ T ++ F+ P D+V+ QR K + Sbjct: 646 DADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQVFHVPFDEVTDLQRRNAKAVNF 705 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---- 489 + Y G ++ ++ + ++ TF D +++ + Sbjct: 706 GIVYGISSFGLSQDLSISRKEAAQYIEHYFESYPGIKTFLDKCVSDAKEKGYAETLYGRR 765 Query: 490 -----------------PEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWK 522 A+ + GTA +++K A K + +LQ+ Sbjct: 766 RPMPELKSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIHVNEELKKRNLKSRMILQVHD 825 Query: 523 DL 524 +L Sbjct: 826 EL 827 Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M + ++L VHDE++ E +T Sbjct: 778 QRSFGERVAMNAPIQGTAADIIKIAMIHVNEELKKRNLKSRMILQVHDELLIEADETELE 837 Query: 643 SVGTL 647 V + Sbjct: 838 EVQQI 842 >gi|321312443|ref|YP_004204730.1| DNA polymerase I [Bacillus subtilis BSn5] gi|320018717|gb|ADV93703.1| DNA polymerase I [Bacillus subtilis BSn5] Length = 880 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 78/487 (16%), Positives = 172/487 (35%), Gaps = 64/487 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113 +++ ++ +S ++ + GI++ + T + A +S + Sbjct: 359 EVFKEWVENDDQKKWVFDSK-RAVVALRWQGIELKGAEF-DTLLAAYIINPGNSYDDVAS 416 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +A ++ H+ +E + KG+ + P + + H+ L + + + E Sbjct: 417 VAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELEN 471 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L + E L L+ + G ++D+D + ++ E + + K+ +E I ++ Sbjct: 472 NDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGTKLKEYEEKIHEIAGEPF- 530 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF G+ +V ++ T +L D IL Sbjct: 531 NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQST 590 Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + D ++ ++TGR S QN+P + Sbjct: 591 YIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------- 633 Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S + AD + IE RVLA I+ ++ I+AF N DI Sbjct: 634 --------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDI 685 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T F+ D+V+ R K + + Y G ++ G + ++ + Sbjct: 686 HTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLE 745 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + + + S + ++ A+ + G+A Sbjct: 746 SFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAA 805 Query: 504 ELVKKAW 510 +++KKA Sbjct: 806 DIIKKAM 812 Score = 42.0 bits (97), Expect = 0.30, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + L +M Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA 859 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 860 L--ALDVPLKVD 869 >gi|199581287|gb|ACH89345.1| DNA polymerase I [Thermus thermophilus] Length = 834 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 71/377 (18%), Positives = 130/377 (34%), Gaps = 57/377 (15%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K L + E+ L + + G R+D+ + L +A+E ++L+E++ +L + Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 L LF + + ++ T K S + + L + + + KL Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545 Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L V GRL A+ TGR S QN+P + Sbjct: 546 TYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A G LV D + IE RVLA ++G++ I+ F G+DI Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464 + T + F P + V R K + + Y A + ++++ Q Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELSIPYEEASAFIERYFQ 700 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + + + E +++ A + GTA Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760 Query: 504 ELVKKAWRAKHQGVLQL 520 +L+K A + Q+ Sbjct: 761 DLMKLAMVKLFPRLRQM 777 Score = 50.9 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 41/105 (39%), Gaps = 6/105 (5%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R+ Y + G Y+ +++ R ++ N+ VQ + D Sbjct: 702 FPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAAD 761 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++ M + G ++L VHDE++ E P V L Sbjct: 762 LMKLAMVKLFPRLRQMGARMLLQVHDELLLEAPQARAEEVAALAK 806 >gi|210077511|gb|ACJ07020.1| PolI [Thermus sp. Fiji3.A1] Length = 831 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 82/467 (17%), Positives = 154/467 (32%), Gaps = 86/467 (18%) Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G+D+P +LA PS+ +A + T+ +AL+A Sbjct: 363 GLDLPPSD--DPMLLAYLLD-PSNTTPEGVARRYGGEWTEDAAQRALLA----------- 408 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + + +E +L L + E+ L + + G R+D+ Sbjct: 409 ------------ERLQQNLLERLEGEEKL---LWLYREVEKPLSRVLAHMEATGVRLDVA 453 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + L + E K+L+E++ +L + L LF + + ++ T K Sbjct: 454 YLKALSLEVEAELKRLEEEVYRLAGHPF-NLNSRDQLERVLFDELKLPALGKTQKTGKRS 512 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTG 318 S + + L + + + KL + L V GRL A+ TG Sbjct: 513 TSAAVLEALREAHPIVEKILQHRELSKLKSTYIDPLPGLVHPRTGRLHTRFN-QTATATG 571 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + +R +A G LV Sbjct: 572 RLSSSDPNLQNIPVRT------------------------PLGQRIRKAFVAEEGFLLVA 607 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 D + IE RVLA ++G++ I+ F G+DI+ T + F P++ V R K + Sbjct: 608 LDYSQIELRVLAHLSGDENLIRVFREGKDIHTQTASWMFGVPLEAVDPRMRRAAKTVNFG 667 Query: 439 LGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------- 475 + Y A + ++++ Q+ + + Sbjct: 668 VLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEGGRQRGYVETLFGRRR 727 Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 + +++ A + GTA +L+K A + + Sbjct: 728 YVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLKET 774 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 10/163 (6%) Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555 + G E V R + + + QE VA + R + + Sbjct: 645 MFGVPLEAVDPRMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 703 Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + L R+ Y + G Y+ +++ R ++ N+ VQ + D++ Sbjct: 704 AWIEKTLEGGRQRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 763 Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 M + G ++L VHDE++ E P +V L +M Sbjct: 764 MVKLFPRLKETGARMLLQVHDELLLEAPKDRAEAVAALAKEVM 806 >gi|160944566|ref|ZP_02091794.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] gi|158444348|gb|EDP21352.1| hypothetical protein FAEPRAM212_02080 [Faecalibacterium prausnitzii M21/2] Length = 857 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 97/513 (18%), Positives = 172/513 (33%), Gaps = 87/513 (16%) Query: 43 KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 + D T +DL++ L + V NS + A+ Sbjct: 346 AVQDTTVYPLEDADLVRLLDNADVTLDVFNSA----------------------PLYAKA 383 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + +L K I+ + + CT ++ A +L + Sbjct: 384 MAAGGWGSSIVWDGKLAAYLLDASASKYQISELIPAYKAAAAFTCT--DYPDAGRLADLF 441 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + E T L ++ E L + + G +D D + + + +E +++ Sbjct: 442 ARMKAEITACGEDALY--NEIEFPLAQVLADMTRTGVLVDKDGIEQFGVKLREELEQVLT 499 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLIL 279 I T + L LF G+ ++ T L L +D++ Sbjct: 500 RIHMETGSATFNPNSPKQLGEMLFDTMGLPHGKKTQRGWSTDAETLESLREYPLVEDVLQ 559 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 R A + L + + DGR+ T A RTGR S QN+P + Sbjct: 560 YR-AYQKLNSTYVEGLLKVIGEDGRIHSTFNQTEA-RTGRLSSDNPNLQNIPIRT----- 612 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R+ +A G LV AD + IE R+LA I G++ Sbjct: 613 -------------------ELGSQLRAYFVAKPGCVLVDADYSQIELRILAHITGDEHMQ 653 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 +AF NGEDI+ +T AK + P +V+ R+ K + + Y GA K Sbjct: 654 QAFLNGEDIHRSTAAKIYGIPQSEVTPRLRSSAKAINFGIMYGKGAYSLSKDIGVTVKEA 713 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 L+ + S S + D A++ + ++ A Sbjct: 714 DAFLKNYLAAFPSVSGYMDKTIADAKANGYVSTLFGRRRTLPELASTNFNVRASGERMAR 773 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + GTA +++K A +++WK L + Sbjct: 774 NTPIQGTAADVIKLAM-------VRVWKRLRDE 799 >gi|291485342|dbj|BAI86417.1| DNA polymerase I [Bacillus subtilis subsp. natto BEST195] Length = 880 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 78/487 (16%), Positives = 172/487 (35%), Gaps = 64/487 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113 +++ ++ +S ++ + GI++ + T + A +S + Sbjct: 359 EVFKEWVENDDQKKWVFDSK-RAVVALRWQGIELKGAEF-DTLLAAYIINPGNSYDDVAS 416 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +A ++ H+ +E + KG+ + P + + H+ L + + + E Sbjct: 417 VAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELEN 471 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L + E L L+ + G ++D+D + ++ E + + K+ +E I ++ Sbjct: 472 NDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF- 530 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF G+ +V ++ T +L D IL Sbjct: 531 NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQST 590 Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + D ++ ++TGR S QN+P + Sbjct: 591 YIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------- 633 Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S + AD + IE RVLA I+ ++ I+AF N DI Sbjct: 634 --------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDI 685 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T F+ D+V+ R K + + Y G ++ G + ++ + Sbjct: 686 HTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLE 745 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + + + S + ++ A+ + G+A Sbjct: 746 SFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAA 805 Query: 504 ELVKKAW 510 +++KKA Sbjct: 806 DIIKKAM 812 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + L +M Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA 859 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 860 L--ALDVPLKVD 869 >gi|317055011|ref|YP_004103478.1| DNA polymerase I [Ruminococcus albus 7] gi|315447280|gb|ADU20844.1| DNA polymerase I [Ruminococcus albus 7] Length = 856 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 144/401 (35%), Gaps = 68/401 (16%) Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +++ E + L ++ E L + ++ G R D + + + + + ++ + L + Sbjct: 439 AENLKLQLEQTEMLKLFNEVEMPLCEVLASMEHYGVRADTNGIREFGKWLKKDIEALTKQ 498 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I L G + L L+ G+ ++ + + +LA + RL Sbjct: 499 IYDLAGGEFNIA-SPKQLGEVLYEKLGLPAKKKTKSGYSTNAE--VLEELADKHPIVRLV 555 Query: 284 SSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + V SDGR+ + +RTGR S QN+P ++ Sbjct: 556 LEYRTLTKLSSTYVDGLLKEVESDGRVHSVFK-QTETRTGRISSTEPNMQNIPVRK---- 610 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A G L+ AD + IE RVLA + G++ Sbjct: 611 --------------------EIGRNMRKFFVAGEGCTLLDADYSQIELRVLAAVCGDENM 650 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454 K F G DI+ T ++ F P D V E R+ K + + Y GA K + Sbjct: 651 RKTFEEGTDIHAMTASQVFGIPADMVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVAE 710 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 ++ + N S F D + + + MQ A Sbjct: 711 AKQYIKNYLDNFPKVSQFMDKTVEDGIKNGYVTTIFGRRRYIPELSATNKVMQAFGKRAA 770 Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + + G A +++K A +Q +LQ+ +L Sbjct: 771 MNAPIQGAAADIIKIAMVKVYQRLKEEKLDARLILQVHDEL 811 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 9/110 (8%) Query: 551 MRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + + + Y + G Y+ ++ + +G + N +Q + D Sbjct: 722 FPKVSQFMDKTVEDGIKNGYVTTIFGRRRYIPELSATNKVMQAFGKRAAMNAPIQGAAAD 781 Query: 609 ILCEGMKNA------TKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651 I+ M K ++L VHDE++ E P+ + L M Sbjct: 782 IIKIAMVKVYQRLKEEKLDARLILQVHDELIIEVTPEDKDKASAVLKEEM 831 >gi|78187499|ref|YP_375542.1| DNA polymerase A [Chlorobium luteolum DSM 273] gi|78167401|gb|ABB24499.1| DNA polymerase A [Chlorobium luteolum DSM 273] Length = 945 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 96/555 (17%), Positives = 187/555 (33%), Gaps = 87/555 (15%) Query: 3 KLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 K+ +D ET S L G+ AE A ++A ++ L Sbjct: 373 KIAVDTETTSLDTFEAEL--AGISISAEPAKARFISFAGTG-------LDRGRSI-EILR 422 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-NACLALN 117 L + + N ++ ++ K G+++ + T + + + AL+ Sbjct: 423 PLLENPAIPKTGQNLKYDILVLKNY-GLELGPVGF-DTMLASYVLDPDGKHNLDDMAALH 480 Query: 118 FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 TK +E GK + + Y C A+ + R++EA L Sbjct: 481 LRLKTTKYDELTGTGKNRLHIYDVEPAKLTDYACQDADLALQLE---GAFTRNLEAEPRL 537 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + +G ID + + + + + L E I Sbjct: 538 MELC---QTIEFPLVSVLAKMEHQGISIDSKHLEETSMAVGHQLESLRETIHAAAGTDF- 593 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF + G+ ++ ++ + + + + DL+L R + Sbjct: 594 NIDSPKQLSHILFNVLGLPTKKTTKTGFSTNVEVLEELAPLHPVVSDLLLYR-SLQKLKT 652 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L + V+ GR+ + + + TGR S QN+P Sbjct: 653 TYIDALPKMVNPRTGRVHTSFNQH-VTATGRLSSSNPNLQNIP----------------- 694 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 I PLG +R I + L+ AD + IE R+ A I+G+ I+AF NG D Sbjct: 695 ----IRTPLG---REIRKAFIPTNPANWLLSADYSQIELRIAAEISGDPKLIEAFRNGLD 747 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T F+T + ++ + R K + + Y G +K + + + Sbjct: 748 IHAETARVIFDT--EDITADMRRKAKEVNFGVLYGIQPFGLSKRLNIPRNEAREIIDTYR 805 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + +Q A+ + GTA Sbjct: 806 EKYPGLFSSLEGVIEEGRKNGFVTTLLGRRRYLRDLTSRNSNVQKAAERAAMNTPIQGTA 865 Query: 503 CELVKKAWRAKHQGV 517 +++K A + + Sbjct: 866 ADIIKCAMNLCSRRI 880 >gi|168187834|ref|ZP_02622469.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] gi|169294285|gb|EDS76418.1| DNA polymerase type I [Clostridium botulinum C str. Eklund] Length = 878 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 85/507 (16%), Positives = 177/507 (34%), Gaps = 89/507 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L +E + V H+S ++ K +I +K + +A PS L Sbjct: 378 LKNLFENEKIKKVCHDSKKVYVVLNKH---NITAKNIAFDTKIAAYLLQPSKSDYMLKDL 434 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 L ++E YD + N + E ++D+ + + Sbjct: 435 IEEMLLLSLKE-----------------YDNIKINETYYIKDIYEKLEKDI-KESNMEEL 476 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E L + ++ G+R+D + + ++ E +E + L+++I +L D + + Sbjct: 477 LYTV---ELPLVEVLASMECAGFRVDENRLTEIGEKFKKEIETLEKEIHELADEEF-NIK 532 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L LF + ++ ++ T +L + I+ + + Sbjct: 533 SPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKIIEYRQITKLDSTYVE 592 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + DG++ + + TGR S QN+P + Sbjct: 593 GLKNVIDGDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKH------------------- 632 Query: 354 ADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + +N + ++ AD + IE R+L+ IA ++ I AF + +DI+ T Sbjct: 633 -----EMGREIRKVFVPNNNESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDIHTIT 687 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKS 468 ++ F PID+V+ R+ K + + Y GA K + + + Sbjct: 688 ASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSRYPN 747 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + D + +S + ++ A+ + G+A +++K Sbjct: 748 VKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKIVRGFGERLAMNTPIQGSAADIIK 807 Query: 508 KAWRA----------KHQGVLQLWKDL 524 A K +LQ+ +L Sbjct: 808 LAMVEVYNELKNRNLKSTLILQVHDEL 834 >gi|258592992|emb|CBE69303.1| DNA polymerase I (POL I) [NC10 bacterium 'Dutch sediment'] Length = 873 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 75/413 (18%), Positives = 143/413 (34%), Gaps = 79/413 (19%) Query: 163 CKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + +L + L+P + E L + ++ + G+ +D D + +L + Sbjct: 444 AAEEAHLVWQLKEALLPQLGQAGLLPLFTTIEMPLIEVLASMEEVGFSVDTDQLSELGKE 503 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + +L+ I L + L LF + + ++ + + + + Sbjct: 504 LESQLSRLESRIFALAGEHF-NINSPKQLAEVLFQRLKLTPLKRTKTGYSTNVE--VLQR 560 Query: 273 LAKDLILNRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 LA L + ++ KL + L A + GR+ + + TGR S Sbjct: 561 LAVTHELPAEVLNYRSLAKLKSTYVDVLLRLAERTSGRIHTSFN-QTVTATGRLSSSEPN 619 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + +R +AS G +L+ AD + IE Sbjct: 620 LQNIPVRT------------------------EVGRRIRQAFVASEGHRLLSADYSQIEL 655 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-- 444 R+LA ++ + I AF G D++ +T A+ F + V+ E R KV+ + Y Sbjct: 656 RILAHLSQDQALIAAFIAGGDVHRSTAAEVFGVQPEAVTVEMRRRAKVINFGIVYGMSPF 715 Query: 445 --AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------- 489 A + L + ++ Q F D E+ L + Sbjct: 716 GLAAELEISQEEAALYIDRYFQIYHGVKAFIDRTICEARELGFVSTFWGRRRAIPELKSS 775 Query: 490 --------PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 AV + G+A +L+K A A + +LQ+ +L Sbjct: 776 DQTVRQLGERLAVNTPIQGSAADLIKVAMIAISRRLRSEQLETRMILQIHDEL 828 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 14/83 (16%) Query: 594 GGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 G +L N +Q + D++ M + + ++L +HDE++ E P+ Sbjct: 783 GERLAVNTPIQGSAADLIKVAMIAISRRLRSEQLETRMILQIHDELLFEVPEVEL----D 838 Query: 647 LCSLMTKNP-SWAKGL--PLKAE 666 + M WA L PLK + Sbjct: 839 VARRMATEEMEWAATLSVPLKVD 861 >gi|113955418|ref|YP_730141.1| DNA polymerase I [Synechococcus sp. CC9311] gi|113882769|gb|ABI47727.1| DNA polymerase I [Synechococcus sp. CC9311] Length = 994 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 119/657 (18%), Positives = 206/657 (31%), Gaps = 165/657 (25%) Query: 49 EQSAMPSDL-----LQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + +P L LQ L N+ ++R++ + +P + ++L Sbjct: 435 QGDPIPDQLPLETVLQALAPWLASGEHPKALQNAKYDRLILLRH---GLPLAGVVMDTLL 491 Query: 100 ARTN-GLPSSLKNACLALN--------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 A + +A FS+ + K +EGKA F + ++S Sbjct: 492 ADYLRDAAAKHGLDAMAQRDYGISPTLFSDLVGKAKEGKASN--FSEVPLESAA------ 543 Query: 151 NHVQAWQLFGEYCKRDVEATREL-------FKRLIP-----LSDGERDLWLLDQTINDRG 198 +YC DV TR+L + L P LS E L + + G Sbjct: 544 ----------QYCGMDVHLTRKLAIDLNQQLEALGPQLPNLLSKVELPLEPVLAVMEATG 593 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 RID+ + L I ++L+ + + + L LF G+D Sbjct: 594 IRIDVPYLEALSCEIGTNLERLEASAKEAAEIDFNLA-SPKQLGDLLFNTLGLDRKKSRR 652 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFY 312 + + +L D + L + KL + L + V + GR+ Sbjct: 653 TKTGYSTDATVLEKLEHDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-Q 711 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P + S +R + + Sbjct: 712 AVTATGRLSSSNPNLQNIPVRT------------------------EYSRRIRKAFLPQD 747 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G L+ AD + IE R+L ++GE+ +A+ +G+D++ T + D+VS ++R +G Sbjct: 748 GWTLLSADYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLDK--DEVSPDERRLG 805 Query: 433 KVMELALGYQGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 K + + Y GA+ F S L ++ Q F + + Sbjct: 806 KTINFGVIYGMGAQRFARETGVSQSEAKDFLSKYKQRYPKVFAFLELQ------------ 853 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + T + RR + R Sbjct: 854 -ERLALSQGYVET-----------------------------------ILGRRRPFHFDR 877 Query: 549 LVMRRHKRD--VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAIS 606 + R + I L +RR +Q +R +Q S Sbjct: 878 NGLGRLNGMDPLEINLEVARR-------------GGMEAQQLRAAANAP------IQGSS 918 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656 DI+ M ++L VHDE+V ET V L M Sbjct: 919 ADIIKLAMVQLQAKLESKNLPARLLLQVHDELVLETEPEALAVVEELVVQTMKNAID 975 >gi|37702659|gb|AAR00931.1|U86402_1 DNA polymerase I [Bacillus subtilis] Length = 880 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 78/487 (16%), Positives = 172/487 (35%), Gaps = 64/487 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113 +++ ++ +S ++ + GI++ + T + A +S + Sbjct: 359 EVFKEWVENDEQKKWVFDSK-RAVVALRWQGIELKGAEF-DTLLAAYIINPGNSYDDVAS 416 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +A ++ H+ +E + KG+ + P + + H+ L + + + E Sbjct: 417 VAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELEN 471 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L + E L L+ + G ++D+D + ++ E + + K+ +E I ++ Sbjct: 472 NDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF- 530 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF G+ +V ++ T +L D IL Sbjct: 531 NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQST 590 Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + D ++ ++TGR S QN+P + Sbjct: 591 YIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------- 633 Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S + AD + IE RVLA I+ ++ I+AF N DI Sbjct: 634 --------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDI 685 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T F+ D+V+ R K + + Y G ++ G + ++ + Sbjct: 686 HTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLE 745 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + + + S + ++ A+ + G+A Sbjct: 746 SFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAA 805 Query: 504 ELVKKAW 510 +++KKA Sbjct: 806 DIIKKAM 812 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + L +M Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA 859 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 860 L--ALDVPLKVD 869 >gi|296332103|ref|ZP_06874567.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675502|ref|YP_003867174.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] gi|296150874|gb|EFG91759.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413746|gb|ADM38865.1| DNA polymerase I [Bacillus subtilis subsp. spizizenii str. W23] Length = 880 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 85/497 (17%), Positives = 175/497 (35%), Gaps = 73/497 (14%) Query: 53 MPSDLLQYLRDETVMCVAHNS-----LFE---RILFKKTLGIDIPSKRWICTSVLARTNG 104 +P D+ + E A N LF+ ++ + GI++ + T + A Sbjct: 350 IPKDI--AVESEVFKEWAENDEQKKWLFDSKRAVVALRWQGIELKGAEF-DTLLAAYIIN 406 Query: 105 LPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 +S + +A ++ H+ +E + KG+ + P + + H+ L + Sbjct: 407 PGNSYDDVASVAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLVRKALAIQSL 461 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + + E +L + E L L+ + G ++D+D + ++ E + + K+ +E Sbjct: 462 REKLVQELENNDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEK 521 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I ++ + L + LF G+ +V ++ T +L D IL Sbjct: 522 IHEIAGEPF-NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQ 580 Query: 281 RLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + L + D ++ ++TGR S QN+P + Sbjct: 581 YRQIGKLQSTYIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR------ 633 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWK 398 +R + S + AD + IE RVLA I+ + Sbjct: 634 ------------------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDQNL 675 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+AF N DI+ T F+ D+V+ R K + + Y G ++ Sbjct: 676 IEAFTNDMDIHTKTAMDVFHVAEDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKE 735 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 G + Q+ ++ + + + + S + ++ A Sbjct: 736 AGAFIDQYLESFQGVKAYMEDSVQDAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTA 795 Query: 494 VKDKLIGTACELVKKAW 510 + + G+A +++KKA Sbjct: 796 MNTPIQGSAADIIKKAM 812 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + L +M Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPQEEIEILEKLVPEVMEHA 859 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 860 L--ALDVPLKVD 869 >gi|295397475|ref|ZP_06807558.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] gi|294974275|gb|EFG50019.1| DNA-directed DNA polymerase I [Aerococcus viridans ATCC 11563] Length = 907 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 97/545 (17%), Positives = 180/545 (33%), Gaps = 102/545 (18%) Query: 34 AYAWD---------DEPVKLWDRTEQSAM---PSDLLQY------LRDETVMCVAHNSLF 75 YA D V T S + + LLQ L D+ V V ++ Sbjct: 347 GYAIYLENLSKNYHDSEVVAVAWTNGSEIFTGDARLLQADLFKAWLSDDQVTKVVFDAKR 406 Query: 76 ERILFKKTLGIDIPSKRWICTSVLART--NGLPSSLKNACLALNFSEHLTKMEEGKALIA 133 +++ LGID + ++ + +S A +A F +E A Sbjct: 407 TKVML-DYLGID--FAGVVDDVLIGSYLLHARDNSNDLAEVAREFDMDDLSYDE-----A 458 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------G 183 + KG+ P + + E+ R V L + + P + Sbjct: 459 IYGKGAKRGVP---------EEAETMYEHIARKVHIIARLQETIRPQLEANQMDDLYQKI 509 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L L+ + G +D ++ +Q + L+ DI K + L + Sbjct: 510 ELPLALVLANLEILGISVDKQQLVTMQAEFKEIIAGLEADIWKEAGHEF-NVNSPKQLGV 568 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF G+ ++ ++ T + +L DLILN + + L E + Sbjct: 569 ILFEEMGLPVIKKTKTGYSTAQDVLEKLAGQAPIIDLILNYRQLNKLQSTYVEGLQEFIH 628 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 DG++ Q + TGR S QN+P + Sbjct: 629 EDGKIHSRFQ-QTLTSTGRLSSADPNLQNIPIRS------------------------EE 663 Query: 361 SDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R + S + +D + IE RVLA I+G+ +AF N EDI+ +T K +N Sbjct: 664 GRSIRKAFVPSHEDWVIFSSDYSQIELRVLAHISGDKHMQEAFNNHEDIHTSTAMKVYNV 723 Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE-- 473 P ++V+ R K + + Y G ++ + + +N + Sbjct: 724 PKEEVTSNMRRNAKAVNFGIVYGISDYGLSQNLNISRPEAKNFIDTYLENYPGVQAYMKD 783 Query: 474 -------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 ++ + ++ A+ + GTA +++K A Sbjct: 784 VVEKAKEDGYVETLFNRRRYLPDLKAKNFNVRSFAERNAMNTPIQGTAADIIKIAMVKMD 843 Query: 515 QGVLQ 519 + + + Sbjct: 844 EALKE 848 >gi|291543473|emb|CBL16582.1| DNA polymerase I [Ruminococcus sp. 18P13] Length = 851 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 91/508 (17%), Positives = 172/508 (33%), Gaps = 72/508 (14%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 E+ L L + + V S L C + +L + + I Sbjct: 346 EQGLILAFLASGCKKRSFDAKPVYRYAFAADSGLTGLCFDGAIAAYLHEATKASYEIPAL 405 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 C+ D + A + +EA + + E L + ++ Sbjct: 406 CRSFHLPYEEDMGDTADIAALPGLCDALANKLEAE----GLTRLMEEIELPLVEVLASME 461 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G +D D V + + ++ E ++L+E+I L + L LF I Sbjct: 462 HTGVLVDQDGVRRFGDALSGEIRQLEEEIYTLAGKQFNIA-SPKQLGQVLFEDLEIPHPQ 520 Query: 256 MSEGTLKSILSHS--NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGT 308 + T S + + +L + L + KLN+ L + V+ DGR+ Sbjct: 521 GKKKTKTGSFSTNAEVLEKLRGAYPIVSLILRYRQLTKLNSTYVAGLLKTVAPDGRIHTC 580 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + +RTGR S QN+P + +R Sbjct: 581 FK-QTETRTGRISSTEPNMQNIPVRT------------------------ELGKEMRKFF 615 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A G+ L+ AD + IE R+LA + + +AF +G DI+ +T A+ F P + V+ + Sbjct: 616 VAPRGRILLDADYSQIELRILANLCEDANMQQAFLSGADIHASTAAQVFGVPREAVTPQM 675 Query: 429 RAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------- 475 R+ K + + Y GA + ++++ +N F Sbjct: 676 RSAAKAVNFGIIYGIGAYSLSQDIGVSVREADRYIKRYLENFPRVEQFMTRIVEDAERTG 735 Query: 476 ------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------- 516 + +SH+ Q A+ + GTA +++K A ++ Sbjct: 736 FVSTLFGRRREVPELKSHNKIQQAAGRRIAMNTPIQGTAADIIKIAMIRVYRRLAREQLD 795 Query: 517 ---VLQLWKDLTEGFACVVQEGGSISAR 541 +LQ+ +L A + ++ R Sbjct: 796 ARLILQVHDELIVEAAVQDADRAAVILR 823 >gi|210077503|gb|ACJ07016.1| PolI [Thermus sp. NMX2.A1] Length = 830 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 80/408 (19%), Positives = 138/408 (33%), Gaps = 65/408 (15%) Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E+ L + + G R+D+ + L + E ++L+E++ +L + Sbjct: 425 LWLYEEVEKPLSRVLAHMEATGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHPF-NLN 483 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILK 291 L LF G+ + +E T K S + + L + D IL S Sbjct: 484 SRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTY 543 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L V RL A+ TGR S QN+P + Sbjct: 544 IDPLPALVHPKTNRLHTRFN-QTATATGRLSSSDPNLQNIPVRT---------------- 586 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R +A G KLVV D + IE RVLA ++G++ I+ F G+DI+ Sbjct: 587 --------PLGQRIRRAFVAEEGWKLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHT 638 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466 T + F P + V R K + + Y A ++++ Q+ Sbjct: 639 QTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEAVAFIERYFQSY 698 Query: 467 KSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACEL 505 + + AE +++ A + GTA +L Sbjct: 699 PKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGTAADL 758 Query: 506 VKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +K A +LQ+ +L E + A+R Sbjct: 759 MKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTME 806 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R Y + G Y+ S++ R ++ N+ VQ + D Sbjct: 698 YPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGTAAD 757 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 ++ M + G ++L VHDE+V E P V Sbjct: 758 LMKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQ 799 >gi|284009391|emb|CBA76577.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 223 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 84/215 (39%), Positives = 114/215 (53%), Gaps = 5/215 (2%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AYA++ EPVK+WD T+ MP DL YL D Sbjct: 10 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYAYNHEPVKVWDVTQDKTMPKDLKAYLDD 68 Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K L ID+P R T V A +GLP +L + C N + Sbjct: 69 PEILTVWHNGGMFDTVILKHALNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 128 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL--IP 179 TK +EGKALI FCK +S T H + W F Y D+ A RE+++ L Sbjct: 129 TKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLPRWN 188 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 ++ E LW LDQ IN RG +D++L + Sbjct: 189 MNFNETTLWQLDQRINLRGMCMDVELAKSALTAVE 223 >gi|33865236|ref|NP_896795.1| DNA polymerase I [Synechococcus sp. WH 8102] gi|33638920|emb|CAE07217.1| DNA polymerase I [Synechococcus sp. WH 8102] Length = 981 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 121/685 (17%), Positives = 217/685 (31%), Gaps = 153/685 (22%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVITLCAY-------AWDDEPVKLWDRTEQSAM 53 +D ET P L +GV + AY + D +PV+L + Sbjct: 388 ALDTETTDLNPFKAELVGIGV---CWGEELDALAYIPLGHNGSADSQPVQLP----LETV 440 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L +L E N+ F+R++ + + + ++LA L++A Sbjct: 441 VTALAPWLGSEDHPKALQNAKFDRLILMRH---GLALDGVVIDTLLADY------LRDAA 491 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 E + + E G A D + +YC DV TR L Sbjct: 492 AKHGL-ELMAEREFGFQPTAYSDLVGKKQTFADV-------PLEAASQYCAMDVHVTRRL 543 Query: 174 F------------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 + L L E+ L + + G RID+ + +L + ++L+ Sbjct: 544 ALLLRNQLAAMGAQVLTLLEQVEQPLEPVLAEMEATGIRIDVPYLQELSTEMGTTLERLE 603 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 + + + L LF G+D + + +L D + Sbjct: 604 TEAKEAAGVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLEKLGDDHPVVP 662 Query: 282 LASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L + KL + L + V + GR+ + TGR S QN+P + Sbjct: 663 LVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIPVRT- 720 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 S +R + G L+ AD + IE R+L ++GE Sbjct: 721 -----------------------EYSRRIRKAFLPQAGWTLLSADYSQIELRILTHLSGE 757 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHC 455 + +A+ +G+D++ T + D+VS ++R +GK + + Y GA+ Sbjct: 758 EVLQEAYRSGDDVHALTARLLLDK--DEVSADERRLGKTINFGVIYGMGAQ--------- 806 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 FA + + + + ++ ++ Sbjct: 807 -----------------------------------RFARETGVSQSEAKDFLSKYKQRYP 831 Query: 516 GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLVYSDV 573 V + + RR + R + R K + I L +RR Sbjct: 832 KVFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKEPLEIDLDVARR------ 885 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYD--IVLT 627 +Q +R +Q S DI+ M G ++L Sbjct: 886 -------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAALTSQGLPARLLLQ 932 Query: 628 VHDEIVSET-PDTPYFSVGTLCSLM 651 VHDE+V E PD + + M Sbjct: 933 VHDELVLEVEPDALETTRDMVVRTM 957 >gi|16079961|ref|NP_390787.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221310850|ref|ZP_03592697.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] gi|221315176|ref|ZP_03596981.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320093|ref|ZP_03601387.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. JH642] gi|221324375|ref|ZP_03605669.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. SMY] gi|6015001|sp|O34996|DPO1_BACSU RecName: Full=DNA polymerase I; Short=POL I gi|2293272|gb|AAC00350.1| DNA-polymerase I [Bacillus subtilis] gi|2635374|emb|CAB14869.1| DNA polymerase I [Bacillus subtilis subsp. subtilis str. 168] Length = 880 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 78/487 (16%), Positives = 172/487 (35%), Gaps = 64/487 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC- 113 +++ ++ +S ++ + GI++ + T + A +S + Sbjct: 359 EVFKEWVENDEQKKWVFDSK-RAVVALRWQGIELKGAEF-DTLLAAYIINPGNSYDDVAS 416 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +A ++ H+ +E + KG+ + P + + H+ L + + + E Sbjct: 417 VAKDYGLHIVSSDES-----VYGKGAKRAVPSEDVLSEHLGRKALAIQSLREKLVQELEN 471 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L + E L L+ + G ++D+D + ++ E + + K+ +E I ++ Sbjct: 472 NDQLELFEELEMPLALILGEMESTGVKVDVDRLKRMGEELGAKLKEYEEKIHEIAGEPF- 530 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF G+ +V ++ T +L D IL Sbjct: 531 NINSPKQLGVILFEKIGLPVVKKTKTGYSTSADVLEKLADKHDIVDYILQYRQIGKLQST 590 Query: 291 KLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + D ++ ++TGR S QN+P + Sbjct: 591 YIEGLLKVTRPDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------- 633 Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S + AD + IE RVLA I+ ++ I+AF N DI Sbjct: 634 --------LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDI 685 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T F+ D+V+ R K + + Y G ++ G + ++ + Sbjct: 686 HTKTAMDVFHVAKDEVTSAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLE 745 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + + + + S + ++ A+ + G+A Sbjct: 746 SFQGVKAYMEDSVQEAKQKGYVTTLMHRRRYIPELTSRNFNIRSFAERTAMNTPIQGSAA 805 Query: 504 ELVKKAW 510 +++KKA Sbjct: 806 DIIKKAM 812 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + L +M Sbjct: 800 IQGSAADIIKKAMIDMAAKLKEKQLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHA 859 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 860 L--ALDVPLKVD 869 >gi|297624586|ref|YP_003706020.1| DNA polymerase I [Truepera radiovictrix DSM 17093] gi|297165766|gb|ADI15477.1| DNA polymerase I [Truepera radiovictrix DSM 17093] Length = 867 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 71/368 (19%), Positives = 126/368 (34%), Gaps = 57/368 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + ER + + + G R+D + E +A++ L+ ++ +L + Sbjct: 466 YEEIERPVAEVLAHMEVTGVRLDTAALAAQSESLAEKLAALEREVRELAGNPNLNLNSRD 525 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 L LF + + T K + S + L + L + KL + Sbjct: 526 QLAELLFEKLELQAGRKT-STGKRSTAVSALEPLKDAHPVVPLILEYRELAKLKSTYLDP 584 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L ++ GRL T A+ TGR S QN+P + Sbjct: 585 LPRLINPHTGRLHTTFN-QTATATGRLSSANPNLQNIPVRT------------------- 624 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R +A G L+VAD + IE R+LA I GE+ ++ F GEDI+ T Sbjct: 625 -----AVGREIRRAFVADEGATLLVADYSQIELRILAHITGEEALVETFRRGEDIHRRTA 679 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST 469 A+ F P + V+ E R + KV+ + Y A+ + ++ + + Sbjct: 680 AQIFGVPPEAVTPEGRRVAKVINFGVLYGMSAHRLARELSIPYAEADAFIRSYFEGYPKV 739 Query: 470 STFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKK 508 + D A + + ++ A + GT ++VK Sbjct: 740 RAYIDETLAFARDKGYVETLFGRRRPIPDIRSSNRNAREYAERTAYNMPIQGTQADIVKL 799 Query: 509 AWRAKHQG 516 A Sbjct: 800 AMVRLLPR 807 >gi|119713448|gb|ABL97509.1| DNA polymerase A [uncultured marine bacterium HOT0_02H05] Length = 970 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 109/626 (17%), Positives = 196/626 (31%), Gaps = 132/626 (21%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L L V N+ F+R++FK I + ++LA P Sbjct: 428 EQVLDRLQSILESNNYPKVFQNTKFDRLIFKHQ---GINLDGVVLDTMLASYVLHPE--- 481 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + SE + EG + G V EYC D AT Sbjct: 482 ---KSHKLSELCEQYLEGITSLDYKDLGIGKKQTIADLDIETV------AEYCGMDAYAT 532 Query: 171 RELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L + L L + E+ L + + D G ID + + KL + + Q Sbjct: 533 FLLVEPLKNELKTLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLS 592 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+E+ + + L LF ++ + H+ + +L D + Sbjct: 593 LEENAYQAAGEKF-NLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPI 651 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + KL + L E V D R+ + TGR S QN+P + Sbjct: 652 IDYILEYRTLSKLKSTYIDALPELVDKIDQRIHTNFN-QSVTATGRLSSSNPNLQNIPIR 710 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 S +R I LV AD + IE R+LA ++ Sbjct: 711 T------------------------EFSRQIRQAFIPQQDWLLVSADYSQIELRILAHLS 746 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 E + A+ N +D++ T F+ ++++ ++R +GK + + Y G++ A Sbjct: 747 QEQVLLNAYKNADDVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQR---FAR 801 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + + M+ + ++G Sbjct: 802 EAGVSAVEGKEFI--NKYRQRYAKVFDYLESMKKEAIANGYVTTILGR------------ 847 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 R ++ R D Sbjct: 848 ----------------------------------RRYFNFFDDNL-------YRFRGHDP 866 Query: 574 KG-DCSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVL 626 + D + +N SQL+R +Q S DI+ M + + Y ++L Sbjct: 867 QNIDLNKININYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLL 920 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLM 651 VHDE+V E P + + + M Sbjct: 921 QVHDELVFEIPHQEWEELEDKIKETM 946 >gi|262277731|ref|ZP_06055524.1| DNA polymerase I [alpha proteobacterium HIMB114] gi|262224834|gb|EEY75293.1| DNA polymerase I [alpha proteobacterium HIMB114] Length = 925 Score = 241 bits (616), Expect = 2e-61, Method: Composition-based stats. Identities = 94/499 (18%), Positives = 175/499 (35%), Gaps = 81/499 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L YL DETV V N ++ K L I K + T +L+ + L + + L L Sbjct: 399 LKPYLEDETVKKVGQNIKYD---LKIFLKYGIELKSFEDTMLLSYS--LDAGVNRHNLDL 453 Query: 117 NFSEHLTKM--------EEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 HL GK+ + ++ Y C A+ ++ + LF + + Sbjct: 454 LAKTHLDHDNIKFKDVVGTGKSEVTFDEVLIDNAYRYACEDADVTLKLYNLFKDRIVK-- 511 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E ++++ L E L + + + G +ID ++ KL + + K L++ I KL Sbjct: 512 EKCFQIYETL------EIPLVDVLARMENNGIKIDQVILKKLSNSFSADLKTLEKKIYKL 565 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA------KDLILNR 281 + + T L L+ I ++ + + + LA L+L Sbjct: 566 SGEEFNIA-STKQLGDILYEKLKISGTKKTKKG-NFATNVNVLEDLASKGNEFPKLVLEW 623 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++L E + + R+ + A+ TGR + QN+P + + Sbjct: 624 RQKSKLKNTYTDSLPEYIDKNTKRIHTSF-LLAATSTGRLASADPNLQNIPIKSK----- 677 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +RS ++ G ++ AD + IE RVLA +A K Sbjct: 678 -------------------EGKLIRSAFVSEKGSSIISADYSQIEMRVLAHVADVKELKK 718 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF N EDI+ T ++ F I K++++ R K + + Y G AK Sbjct: 719 AFKNNEDIHNITASQIFECDIKKINEDMRRKAKAINFGIIYGISSYGLAKQISVSNPEAE 778 Query: 457 LDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVK 495 L + + + + + ++ A+ Sbjct: 779 QFLFSYFKKFPEIRDYMQETLEFCRKNGFVQTMFNRKCHFPNINDKNHTLKSFQERAAIN 838 Query: 496 DKLIGTACELVKKAWRAKH 514 + G A ++++ A Sbjct: 839 APIQGAAADIIRFAMINID 857 >gi|116327352|ref|YP_797072.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116120096|gb|ABJ78139.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 921 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 98/605 (16%), Positives = 199/605 (32%), Gaps = 117/605 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKL---WDRTEQSAM 53 L +D ET SP P A AE L ++ ++ V + + + Sbjct: 344 RVLSVDTETTSPNP-------AMAE-----LLGISFSNQEKTGFYVSVKNSASLFQDKSF 391 Query: 54 -PSDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 ++ ++L V V N ++ I+ + ++LA P Sbjct: 392 SLEEIREHLGPVLSSQVPKVGQNIKYDLIVLENH---GFILNNIQFDTMLASYVIQPEGR 448 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 ++ L K I + T + + EY D + Sbjct: 449 RHNMDVL------AKDLLNYDTITYDDLVGTGKKKKELTDIDP----EQVAEYAAEDADI 498 Query: 170 TRELFKRLI---------PLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L++ P+ E L + + G +D+ +L +E + Sbjct: 499 TFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRH 558 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+ +I K + T L+ LF + V ++ H + +L + + Sbjct: 559 LESEIHKQAGRSFNIA-STKELQKILFDDLKLKTVKKTQ--TGYSTDHEVLEELLGEHPI 615 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 KL + L + V+ GR+ + A+ TGR S QN+P + Sbjct: 616 VEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIR 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWI 392 +R +R + S+ +++ D + IE R++A I Sbjct: 675 DR------------------------EGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHI 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 + + ++A+ +G DI++ T A + P +V+ E R KV+ ++ Y G ++ Sbjct: 711 SKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSRNL 770 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487 + ++++ ++ D S H ++ Sbjct: 771 RIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRLIVDINSTHKSAKE 830 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGS 537 A+ + GT+ +++K A H+ + LQ+ +L +E Sbjct: 831 AAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKEKEEFK 890 Query: 538 ISARR 542 IS ++ Sbjct: 891 ISMKK 895 >gi|116332033|ref|YP_801751.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125722|gb|ABJ76993.1| DNA-directed DNA polymerase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 921 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 97/605 (16%), Positives = 199/605 (32%), Gaps = 117/605 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP-----VKL---WDRTEQSAM 53 L +D ET SP P A AE L ++ ++ V + + + Sbjct: 344 RVLSVDTETTSPNP-------AMAE-----LLGISFSNQEKTGFYVSVKNSASLFQDKSF 391 Query: 54 -PSDLLQYL---RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 ++ ++L V V N ++ I+ + ++LA P Sbjct: 392 SLEEIREHLGPVLSSQVPKVGQNIKYDLIVLENH---GFILNNIQFDTMLASYVIQPEGR 448 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 ++ L K I + T + + EY D + Sbjct: 449 RHNMDVL------AKDLLNYDTITYDDLVGTGKKKKELTDIDP----EQVAEYAAEDADI 498 Query: 170 TRELFKRLI---------PLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L++ P+ E L + + G +D+ +L +E + Sbjct: 499 TFRLYQIFRKKIKESGVEPILRNIEMPLISVLAKMEKTGIALDVPYFEELARDFDREIRH 558 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+ +I + + T L+ LF + V ++ H + +L + + Sbjct: 559 LESEIHRQAGRSFNIA-STKELQKILFDDLKLKTVKKTQ--TGYSTDHEVLEELLGEHPI 615 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 KL + L + V+ GR+ + A+ TGR S QN+P + Sbjct: 616 VEKLLDYRKYTKLKSTYVDALPKMVNPRTGRIHTSYNQTIAA-TGRLSSTDPNLQNIPIR 674 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWI 392 +R +R + S+ +++ D + IE R++A I Sbjct: 675 DR------------------------EGRLLRKGFTVDSDEYEILSLDYSQIELRIMAHI 710 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 + + ++A+ +G DI++ T A + P +V+ E R KV+ ++ Y G ++ Sbjct: 711 SKDPAMLEAYNHGLDIHIRTAAALYGVPEKEVTPEMRDKAKVVNFSVIYGVTPYGLSRNL 770 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487 + ++++ ++ D S H ++ Sbjct: 771 RIPRDEAKSFIERYMIQYPGVKSYMDSMVEFAEKNGYVQTLTGRRRPIVDINSTHKSAKE 830 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGS 537 A+ + GT+ +++K A H+ + LQ+ +L +E Sbjct: 831 AAKRVAINSPVQGTSADMIKIAMINIHEDIEKKHYRSRMLLQVHDELVFEVHKKEKEEFK 890 Query: 538 ISARR 542 IS ++ Sbjct: 891 ISMKK 895 >gi|67923259|ref|ZP_00516744.1| DNA polymerase A [Crocosphaera watsonii WH 8501] gi|67854885|gb|EAM50159.1| DNA polymerase A [Crocosphaera watsonii WH 8501] Length = 970 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 111/626 (17%), Positives = 197/626 (31%), Gaps = 132/626 (21%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L L V N+ F+R++FK I + ++LA P Sbjct: 428 EQVFDRLQSILESNNYPKVFQNTKFDRLIFKHQ---GINLDGVVLDTMLASYVLHPE--- 481 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + SE + EG + G V EYC D AT Sbjct: 482 ---KSHKLSELCEQYLEGITSLDYKDLGIGKKQTIADLDIETV------AEYCGMDAYAT 532 Query: 171 ----RELFKRLIPLS-------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L L PLS + E+ L + + D G ID + + KL + + Q Sbjct: 533 FLLVEPLKNELKPLSTLDKLLLEVEQPLEPVLAIMEDTGIIIDSEYLGKLSKELEQHLLS 592 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+E+ + + L LF ++ + H+ + +L D + Sbjct: 593 LEENAYQAAGEKF-NLGSPKQLGHILFEKLELNRKKSRKTKTGYSTDHATLEKLKGDHPI 651 Query: 280 NRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + KL + L E V D R+ + TGR S QN+P + Sbjct: 652 IDYILEYRTLSKLKSTYIDALPELVDKIDQRIHTNFN-QSVTATGRLSSSNPNLQNIPIR 710 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 S +R I LV AD + IE R+LA ++ Sbjct: 711 T------------------------EFSRRIRQAFIPQQDWLLVSADYSQIELRILAHLS 746 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 E + A+ N +D++ T F+ ++++ ++R +GK + + Y G++ A Sbjct: 747 QEQVLLNAYKNADDVHSVTARLLFDK--EEITPQERTLGKTINFGVIYGMGSQR---FAR 801 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + + + + M+ + ++G Sbjct: 802 EAGVSAVEGKEFI--NKYRQRYAKVFDYLESMKKEAIANGYVTTILGR------------ 847 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 R ++ R D Sbjct: 848 ----------------------------------RRYFNFFDDNL-------YRFRGHDP 866 Query: 574 KG-DCSYLN--TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVL 626 + D + +N SQL+R +Q S DI+ M + + Y ++L Sbjct: 867 QNIDLNKININYNDSQLLRAAANAP------IQGSSADIIKIAMVKIQEILDNYQANLLL 920 Query: 627 TVHDEIVSETPDTPYFSVGT-LCSLM 651 VHDE+V E P + + + M Sbjct: 921 QVHDELVFEIPHQEWEELEDKIKETM 946 >gi|118602134|ref|YP_903349.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567073|gb|ABL01878.1| DNA polymerase I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 906 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 97/581 (16%), Positives = 197/581 (33%), Gaps = 83/581 (14%) Query: 2 SKLFIDIETRSPQ--PLPKVG-VWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 D+ET S VG V+ + + + + + P +L + + L Sbjct: 332 KTFVFDLETTSLDYMNATIVGWVFLVDKNSFYVPVGHDYLNAPKQL----DFKDVLDQLK 387 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALN 117 L D ++ V N ++ + ID+ T V + + + L+ Sbjct: 388 LILEDVSIGKVGQNLKYDAHILANY-QIDLQGISD-DTMVKSYCLNSVATRHNIDDLSEY 445 Query: 118 FSEHL-----TKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATR 171 + H +GK I F + +++ PY C +V L ++ Sbjct: 446 YLNHKTIHFDDIAGKGKKQIT-FNQVDLETAFPYAC---EYVIVTDLLNHVLDEEIVQYP 501 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L K + E L + + G +D++ + Q I Q+ K + + +L I Sbjct: 502 KLVKL---YQNLELPLIKVLLCMERNGIELDMNELSTQQIDIVQQMKDIQAQVFELAGDI 558 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----DLILNRLASSGS 287 ++ LF G+ L + + + ++ +L DLIL+ + Sbjct: 559 FNLE-SPKQIQQILFEPEGLGLTPLKKTPKGAPSTNEEALKLLDHPLVDLILSYRTLTKL 617 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L L + + + T + TGR S QN+P + + Sbjct: 618 NSTYLEALPKQIDLNTHRLHTSYHQAVTVTGRLSSSNPNLQNIPIRSK------------ 665 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A ++ AD + IE R++A ++ + + AF + +D Sbjct: 666 ------------QGARIRGAFVAGKDNVIIAADYSQIELRIMAQLSQDKNLLDAFNHDKD 713 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFS 463 ++ T + FN PI++V+K+ R K + L Y A K + + Sbjct: 714 VHSVTASTMFNMPINEVTKKHRRRSKAINFGLIYGMSAFGLTKQIDVSIIEAKQYIDTYF 773 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 N + D Q S + +Q A+ + G++ Sbjct: 774 DNYPGVLHYMDSIKESAKVWGYVETVMGRRLYLPQINSKNKILQQHALRTAINAPMQGSS 833 Query: 503 CELVKK------AWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 +++KK AW ++ +++ + + V E + Sbjct: 834 ADIIKKSMLDIHAWIGENNPDIRMIMQVHDELVFEVSESKA 874 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 37/119 (31%), Gaps = 16/119 (13%) Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 V + + K ++ RRL + L +R Sbjct: 777 PGVLHYMDSIKESAKVWGYVETVMGRRLYLPQINSKNKILQQHA---LRTAINAP----- 828 Query: 601 IVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652 +Q S DI+ + M + +++ VHDE+V E ++ + LM Sbjct: 829 -MQGSSADIIKKSMLDIHAWIGENNPDIRMIMQVHDELVFEVSESKADEFAHKIQGLMA 886 >gi|304437426|ref|ZP_07397385.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369682|gb|EFM23348.1| DNA-directed DNA polymerase I [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 874 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 71/382 (18%), Positives = 126/382 (32%), Gaps = 58/382 (15%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +E + + E L + + G ++ + + + L +I Sbjct: 457 METELAAQELMHLYRTVELPLVPVLAAMEQTGVCVNRAALEHERAAATERIDALAREIHT 516 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + L LF G+ + + + + L + + Sbjct: 517 LAGTEF-NISSPKQLGEILFEQLGLGDGKVKKTKTGYSTNAETLEGLRDQHPIIDKVLTY 575 Query: 287 SAILKLN-TLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 KL T + + + GR+ + + TGR S QN+P + Sbjct: 576 RMWTKLRSTYLDGIGALIRPATGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT------ 628 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKI 399 VR+ G L+ AD + IE R+LA ++G+ I Sbjct: 629 ------------------EEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLI 670 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF G+DI+ T A+ F P+D V+ EQR K + + Y G A+ Sbjct: 671 DAFRQGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREA 730 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH--------------------HLWMQDQYPE-FAV 494 G + ++ + TF D A++H +MQ + E A+ Sbjct: 731 GGYIDRYFERYHGVRTFLDKIVADAHANGYVTTLYGRRRALPALASRNYMQRSFAERMAM 790 Query: 495 KDKLIGTACELVKKAWRAKHQG 516 + GTA +L+K A + Sbjct: 791 NTPIQGTAADLIKIAMVRAYDA 812 >gi|206900363|ref|YP_002250598.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] gi|38146985|gb|AAR11877.1| DNA polymerase I [Dictyoglomus thermophilum] gi|206739466|gb|ACI18524.1| DNA polymerase I [Dictyoglomus thermophilum H-6-12] Length = 856 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 69/371 (18%), Positives = 132/371 (35%), Gaps = 59/371 (15%) Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L + E L + ++ G ++D + + +L + + KKL+E+I +L + Sbjct: 453 FVLYNIEIPLIPVLYSMEKWGIKVDKEYLKQLSDEFCERIKKLEEEIYELAGTRF-NLNS 511 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----- 292 L LF + L +G S S + L + R + KL Sbjct: 512 PKQLSEVLFER--LKLPSGKKGKTGYSTSSSVLQNLINAHPIVRKILQYRELYKLKSTYV 569 Query: 293 NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + + V+ GR+ G + TGR S QN+P + Sbjct: 570 DAIPNLVNPQTGRVHTKFNPTG-TATGRISSSEPNLQNIPIKS----------------- 611 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R ++ +G LV D + IE R++A ++ E I AF GEDI+ Sbjct: 612 -------EEGRKIRRAFVSEDGYFLVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRR 664 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467 T ++ F P ++V R+ K + + Y G ++ + + ++ Sbjct: 665 TASEIFGVPEEEVDDLLRSRAKAVNFGIIYGISSFGLSETVSITPEEAEKFIDSYFKHYP 724 Query: 468 STSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELV 506 F D E+ + +++ Y A+ + GTA +++ Sbjct: 725 RVKLFIDKTIHEAREKLYVKTLFGRKRYIPEIKSINKQVRNAYERIAINAPIQGTAADII 784 Query: 507 KKAWRAKHQGV 517 K A ++ + Sbjct: 785 KLAMIEIYKEI 795 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 14/126 (11%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYLNTATSQLMRERTY 593 A + + R K + + +R +Y + + ++ +R Y Sbjct: 709 PEEAEKFIDSYFKHYPRVKLFIDKTIHEAREKLYVKTLFGRKRYIPEIKSINKQVR-NAY 767 Query: 594 GGKLTENIVQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M K I+L +HDE++ E P+ Sbjct: 768 ERIAINAPIQGTAADIIKLAMIEIYKEIENKNLKSRILLQIHDELILEVPEEEM----EF 823 Query: 648 CSLMTK 653 LM K Sbjct: 824 TPLMAK 829 >gi|313679946|ref|YP_004057685.1| DNA polymerase I [Oceanithermus profundus DSM 14977] gi|313152661|gb|ADR36512.1| DNA polymerase I [Oceanithermus profundus DSM 14977] Length = 839 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 84/424 (19%), Positives = 142/424 (33%), Gaps = 65/424 (15%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +E L+ + ER L + + RG ++D+D +L L + +A E ++L+ +I + Sbjct: 428 LEGEERLWWLYR---EVERPLQGVLAAMERRGVKLDVDYLLALSQELAAELERLEAEIHR 484 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + L L+ G+ + T K S S + L + Sbjct: 485 LAGHPF-NLNSRDQLETVLYDELGLAAGRRTAKTGKRSTSASVLETLRGAHPIVEKILQY 543 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + V GRL G + TGR S QN+P + Sbjct: 544 RELAKLKGTYLDPLPKLVHPRTGRLHTRFHQTG-TATGRLSSSDPNLQNIPIRT------ 596 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +A G LVVAD + IE RVLA ++G++ I+ Sbjct: 597 ------------------EIGRRIRKGFVAGEGYLLVVADYSQIELRVLAHLSGDENLIR 638 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCG 456 F G DI+ T A F +V +R K + + Y A + Sbjct: 639 IFQEGRDIHTQTAAWMFGVEDVEVDPFRRRAAKTINFGVLYGMSAHRLSRELGIDYGEAQ 698 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVK 495 + ++ + F + E+ +++ A Sbjct: 699 AFIDRYFDSYPGVRAFMERVLEEARERGYVETLFGRRRHVPELLSKARNVREAAERVAFN 758 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDL-----TEGFACVVQEGGSISARRVANVPRLV 550 + GTA +L+K A + L L E +E + +AR V Sbjct: 759 MPVQGTAADLIKLAMVKLAPRLEPLGAALLLQVHDELVVEAPEERAAETARVVKATMEEA 818 Query: 551 MRRH 554 R Sbjct: 819 WRLD 822 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 VQ + D++ M G ++L VHDE+V E P+ + T +W Sbjct: 761 VQGTAADLIKLAMVKLAPRLEPLGAALLLQVHDELVVEAPEERAAETARVVKA-TMEEAW 819 Query: 658 AKGLPLKAE 666 +PL E Sbjct: 820 RLDVPLAVE 828 >gi|23099618|ref|NP_693084.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] gi|22777848|dbj|BAC14119.1| DNA polymerase I [Oceanobacillus iheyensis HTE831] Length = 880 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 90/506 (17%), Positives = 167/506 (33%), Gaps = 73/506 (14%) Query: 53 MPSDLLQYLRDETVMCVA-----HNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLP 106 +P+D+ L A H +F+ K L +I + I S+LA P Sbjct: 350 IPTDI--ALNSNIFKAWAEDPQKHKIVFDAKRTKVALLRNNINMQGIIFDSLLASYLLNP 407 Query: 107 SSLKNACLA---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 + + A + EE F KG+ P HV Sbjct: 408 AENNHDIPAIANRKSRSDVQFDEEV------FGKGAKQKVPEADVLNEHVVRKTQLLFDL 461 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++E ++ L + E L L+ + G ++D+D + + E + + L+++ Sbjct: 462 YPEMEEELGNNEQYELLKELEMPLALILAEVEHYGVQVDIDKLKDMGEDLKERLSTLEQE 521 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 + +L + L LF G+ ++ ++ T +L +L Sbjct: 522 VYELAGETF-NLNSPKQLGPILFEKLGLPVIKKTKTGYSTAADVLEQLENEHDIIPKLLM 580 Query: 281 RLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + L + V D R+ ++TGR S QN+P + Sbjct: 581 YRQLGKLQSTYIEGLLKVVRKDTSRIHTRYN-QALTQTGRLSSIEPNLQNIPIR------ 633 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + S + + AD + IE RVLA IAG++ Sbjct: 634 ------------------LEEGRKIRQAFVPSKDNWIMFAADYSQIELRVLAHIAGDEKL 675 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 IKAF DI+ T F+ D+V+ R K + + Y G ++ Sbjct: 676 IKAFKEDTDIHTQTAMDVFHVESDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKE 735 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFA 493 ++++ + T+ D E+ H M+ A Sbjct: 736 AKKFIERYFNSYPGVKTYMDEIVQEAKHKGFVSTIMKRRRYLPDITSRNFNMRSFAERTA 795 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQ 519 + + G+A +++KKA + + Sbjct: 796 MNTPIQGSAADIIKKAMIDLDHRLKE 821 >gi|322434369|ref|YP_004216581.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] gi|321162096|gb|ADW67801.1| DNA polymerase I [Acidobacterium sp. MP5ACTX9] Length = 975 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 69/366 (18%), Positives = 124/366 (33%), Gaps = 56/366 (15%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 + L + + + G RID ++ ++ +A E L E I + + L Sbjct: 576 IDLPLVPVLLRMEEAGVRIDPAVLNEMSSRLAVEIDNLAEKIYADSGHRF-NINSPKQLG 634 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSE 297 LF + + + +LA++ + L + KL + L Sbjct: 635 DVLFNKMDLPKPMKYGKGKVVSTAQDVLEELAENHPIAALVIEHRQLQKLKSTYLDQLPS 694 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 +GR+ T G + TGR S QN+P + Sbjct: 695 LSDREGRIHTTFNQVG-TATGRLSSTNPNLQNIPTRT----------------------- 730 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R+ IA+ G L+ AD + IE R++A + + + A+ G+DI+ T A+ F Sbjct: 731 -AIGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLNAYRTGQDIHTLTAAEVF 789 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + + KE RA K + + Y G A ++ + K F Sbjct: 790 GVDAETMDKETRARAKAVNFGIVYGISPFGLAAQLGIDQKVARTYIETYYDRYKGIKRFI 849 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 D +S + M+ A+ L GTA +L+K A + Sbjct: 850 DETLETVRLAGAVSTHFGRVRPIPDIQSRNPNMRGFAERTAINTPLQGTAADLIKLAMIS 909 Query: 513 KHQGVL 518 + + Sbjct: 910 LDREIR 915 >gi|162456954|ref|YP_001619321.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167536|emb|CAN98841.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 900 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 104/570 (18%), Positives = 173/570 (30%), Gaps = 92/570 (16%) Query: 3 KLFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +L +D+ S +P+ GV E QAV + + P +L S + + + Sbjct: 327 RLALDVLATSREPMSAHVCGVALACEPGQAVYVPLGHRYLGAPAQL----SMSDIDAVMG 382 Query: 59 QYLRDETVMCVAHNSLF-ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 L D + V H+ F E IL + +G+ ++LA P L Sbjct: 383 PLLADPELPKVGHDVKFCEVILLRHRIGLV----GVSFDTMLASYLLDPEGKNQLHE-LA 437 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 E KM+ RA Y + L RL Sbjct: 438 ERELGAKMQT--------LDEVAPKRRGQAQRALDEIELGEASSYGAAFADVALSLTDRL 489 Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P L E L + + G +D + +L + E L++ ++ Sbjct: 490 RPRLRAEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREI 549 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 I + L LF + ++ + L+++ + Sbjct: 550 VGHDINLA-SPKQLEAVLFDELKLRSQRKTK--TGRSTDADVLEALSEEHPFPGVVLEHR 606 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 AI KL + L V GR+ + TGR S QN+P + Sbjct: 607 AIAKLKGTYVDALPRLVHPGTGRIHTRWG-QAVAATGRLSSQDPNLQNIPIRT------- 658 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G +V AD + IE RVLA ++ + + A Sbjct: 659 -----------------ELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDA 701 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGL 457 F G+D++V T + F V+ E R K + + Y G + Sbjct: 702 FRTGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESALAKRLDISRAEAAR 761 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAVKD 496 + + + F + AE+ + Q A Sbjct: 762 FIDAYFARYRGVHEFMEGTMAEAKRSESVRTLLGRRRLLPDLRSSDRMRRAQAERIAQNT 821 Query: 497 KLIGTACELVKKAW-RAKHQGVLQLWKDLT 525 + GTA +L+K A R V LT Sbjct: 822 PIQGTAADLLKLAMVRVPRPVVPGARMVLT 851 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 18/76 (23%) Query: 602 VQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM------ 651 +Q + D+L M + G +VLTVHDE+ E P + M Sbjct: 823 IQGTAADLLKLAMVRVPRPVVPGARMVLTVHDELAFEVPAEAVDEAKAKVREAMESVFPL 882 Query: 652 --------TKNPSWAK 659 P+WA Sbjct: 883 DVPLVVDVGHGPTWAD 898 >gi|225873354|ref|YP_002754813.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] gi|225793909|gb|ACO33999.1| DNA polymerase I [Acidobacterium capsulatum ATCC 51196] Length = 924 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 70/382 (18%), Positives = 129/382 (33%), Gaps = 58/382 (15%) Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E RE L + L + + G RID +++ L + +A + ++ + I + Sbjct: 512 EVERE--DTLKVYEQIDLPLAPVLLAMEQHGVRIDSEMLRALGDRLAADMHRVSQQIYEQ 569 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF + + + +LA + RL Sbjct: 570 AGHRF-NINSPKQLGDVLFNKMNLPRPLKYGKGKVISTAQDVLEELAAHNDVPRLVLEFR 628 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL ++L S GR+ T G + TGR S QN+P + Sbjct: 629 QLAKLKSNYVDSLPLLADSQGRVHTTFHQVG-TATGRLSSTNPNLQNIPVRT-------- 679 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ IA+ G+KL+ AD + IE R++A + + + A+ Sbjct: 680 ----------------ALGREIRAAFIAAPGRKLLSADYSQIELRLMAHFSEDPLLLNAY 723 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 + G+DI+ T ++ F + + KE R K + + Y G A+ Sbjct: 724 STGQDIHTLTASEVFGVAPEAMDKETRNRAKAVNFGIVYGISPFGLAQQLGIDQHEARQY 783 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 + + + + D +S + + AV Sbjct: 784 IDTYFARYQGVRAYIDRVLEQTRREQRVRTLFGRVRPIPDIQSRNANQRGFAERTAVNTP 843 Query: 498 LIGTACELVKKAWRAKHQGVLQ 519 L GTA +L+K A + + Sbjct: 844 LQGTAADLIKLAMIRIDARIKK 865 >gi|320450017|ref|YP_004202113.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] gi|320150186|gb|ADW21564.1| DNA polymerase I, thermostable [Thermus scotoductus SA-01] Length = 830 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 79/408 (19%), Positives = 138/408 (33%), Gaps = 65/408 (15%) Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L + E+ L + + G R+D+ + L + E ++L+E++ +L + Sbjct: 425 LWLYEEVEKPLSRVLAHMEATGVRLDVAYLKALSLEVEAELRRLEEEVHRLAGHPF-NLN 483 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILK 291 L LF G+ + +E T K S + + L + D IL S Sbjct: 484 SRDQLERVLFDELGLPAIGKTEKTGKRSTSAAVLEALREAHPIVDRILQYRELSKLKGTY 543 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L V RL A+ TGR S QN+P + Sbjct: 544 IDPLPALVHPKTNRLHTRFN-QTATATGRLSSSDPNLQNIPVRT---------------- 586 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R +A G +LVV D + IE RVLA ++G++ I+ F G+DI+ Sbjct: 587 --------PLGQRIRRAFVAEEGWRLVVLDYSQIELRVLAHLSGDENLIRVFQEGQDIHT 638 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466 T + F P + V R K + + Y A ++++ Q+ Sbjct: 639 QTASWMFGVPPEAVDSLMRRAAKTINFGVLYGMSAHRLSGELAIPYEEAVAFIERYFQSY 698 Query: 467 KSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACEL 505 + + AE +++ A + GTA +L Sbjct: 699 PKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGTAADL 758 Query: 506 VKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +K A +LQ+ +L E + A+R Sbjct: 759 MKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQEAKRTME 806 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%) Query: 551 MRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + L R Y + G Y+ S++ R ++ N+ VQ + D Sbjct: 698 YPKVRAWIEKTLAEGRERGYVETLFGRRRYVPDLASRVKSIREAAERMAFNMPVQGTAAD 757 Query: 609 ILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 ++ M + G ++L VHDE+V E P V Sbjct: 758 LMKLAMVKLFPRLQELGARMLLQVHDELVLEAPKEQAEEVAQ 799 >gi|320334043|ref|YP_004170754.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] gi|319755332|gb|ADV67089.1| DNA polymerase I [Deinococcus maricopensis DSM 21211] Length = 857 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 135/403 (33%), Gaps = 65/403 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D ER L + + RG R+D + L + + ++LD I +L S L Sbjct: 458 DVERPLAHVLARMEVRGVRLDSAYLRGLSDSLGARAQELDARIQELAGHPF-SVNSRDQL 516 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 L+ G+ ++ T K + S + L + + L + KL + L Sbjct: 517 ESVLYDELGLASGKKTKLTGKRSTAVSALEPLRDEHPIIPLLLEYRELTKLKGTYLDPLP 576 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 V+ GRL T A TGR S QN+P + + Sbjct: 577 NLVNPLTGRLHTTFA-QTAVATGRLSSLNPNLQNIPIRSET------------------- 616 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R IA +G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 617 -----GREIRKGFIADDGFCLISADYSQIELRLLAHIADDALMQEAFVGGADIHRRTAAQ 671 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471 D V+ QR K + + Y A + ++++ Sbjct: 672 VLGVMEDLVTPNQRRAAKTVNFGVLYGMSAHRLSNDLGISFAEASRFIERYFATYPRIRE 731 Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D A + M++ A + GTA +++K A Sbjct: 732 YIDATLAFGREHGYVETMYGRRRLVPELRSANRTMREAGERVAYNMPIQGTAADIIKIAM 791 Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 + +LQ+ +L + + RRV Sbjct: 792 VELDEQLSALGARLLLQVHDELLIEAPSDRADEVAALTRRVME 834 >gi|212702438|ref|ZP_03310566.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] gi|212674099|gb|EEB34582.1| hypothetical protein DESPIG_00455 [Desulfovibrio piger ATCC 29098] Length = 919 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 141/385 (36%), Gaps = 63/385 (16%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QLF + ++D ELF+RL E L + + G ID + + + Sbjct: 499 QLFEQRMEKD--GLLELFRRL------EMPLLPVLAGMEQSGVAIDAAAFRAFLDDVQGQ 550 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ 272 +L + +L + R L LF G+ ++G T + L Sbjct: 551 LDQLTAHVYELAGTQF-NIRSAQQLGDVLFNGLGLPAPRKTKGGQASTSQQTLEKLAGQH 609 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 D IL L+ L V GR+ T A+ TGR S QN+P Sbjct: 610 PVVDSILQYRKLEKMRSTYLDPLPRLVDPQGRIHTTFN-QKATATGRLSSSNPNLQNIP- 667 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 G +RSC IA G+ LV AD + +E RVLA + Sbjct: 668 -----------------------VRGPLGKRMRSCFIAGPGRLLVSADYSQVELRVLAHV 704 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----F 448 + + ++AF NGEDI+ T A ++ P D+VS +QR K + L Y GA+ Sbjct: 705 SQDPALLEAFRNGEDIHARTAALVYDLPPDQVSPDQRRNAKTINFGLIYGMGAQKLAQEL 764 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEFA-------- 493 K + + ++ + ++ F + +A + + P+ Sbjct: 765 KISTTQAKDFIARYFERLQGLKEFYEGVEASARKHGFVTTLGGRRRLLPDINSASGQAAA 824 Query: 494 ------VKDKLIGTACELVKKAWRA 512 + + G+A +++K A A Sbjct: 825 LARRQAINTVIQGSAADIIKLAMLA 849 Score = 44.7 bits (104), Expect = 0.048, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 598 TENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS-L 650 ++Q + DI+ M + ++L VHDE++ E P G L + L Sbjct: 831 INTVIQGSAADIIKLAMLAVARDERLRELDARLLLQVHDELLLEVPADAAEEAGALVARL 890 Query: 651 M 651 M Sbjct: 891 M 891 >gi|282901618|ref|ZP_06309536.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] gi|281193494|gb|EFA68473.1| DNA polymerase A [Cylindrospermopsis raciborskii CS-505] Length = 988 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 116/655 (17%), Positives = 217/655 (33%), Gaps = 136/655 (20%) Query: 33 CAYAWDDEPVKLWDRTEQ-----------SAMPSDLLQYLRDETVMCVAHNSLFERILFK 81 C + + V + + S L + L N+ F+R++FK Sbjct: 410 CCWGMGENDVAYIPLGHNITTNLEKNLQLNTVLSTLDKILASRDYPKTFQNAKFDRLIFK 469 Query: 82 KTLGIDIPSKRWICTSVLARTNGLPSS-LKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 G+ + I +LA P LAL + + E ++ + K Sbjct: 470 -YQGVTL--DGVIFDPMLASYLLNPDHTHNLTDLALRYLGLQ--LTEYDHIVQKSGKKEP 524 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189 D + H A YC + V AT +L +L L D E+ L + Sbjct: 525 QKTIADI--SIHTVA-----NYCGKQVYATWQLVGKLREELNKIPALFKLLVDVEQPLEV 577 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + RG I+ + +L + I + L+ K+ + L LF Sbjct: 578 VLAEMEHRGVIINSAYLQQLSQYIESDLATLEIKATKIAGEKF-NLGSPKQLSYILFEKL 636 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVS-S 301 G+ + + + + +L + D I+ + ++ L E V+ Sbjct: 637 GLSTKYSRKISTGYSTDAATLEKLQEVDETGFVDAIIEYRTLAKLKSTYVDALPELVNHK 696 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 R+ + A+ TGR S QN+P + S Sbjct: 697 TQRIHTSFN-QTATATGRLSSSNPNLQNIPIRT------------------------AFS 731 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + +G +V AD + IE R+LA ++ E I+A++N +DI+ T F+ Sbjct: 732 RQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK-- 789 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + V+ E+R K + + Y G + G+D ++ ++ Sbjct: 790 EDVTSEERRFAKTINFGVIYGMGV---LKFSRSTGVDKNIANEFIQ-------------- 832 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +F + L+ T E +KK + + E R Sbjct: 833 ---------KFNQRYPLVFTYLETIKK-----------------QAISQGYVETILGRRR 866 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 + + +D+ + + +K L + L+R Sbjct: 867 YFDFTNKTLREFKGKDLQ-------EIELNKLKN----LGPYDAGLLRSAANAP------ 909 Query: 602 VQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 +Q S DI+ M + Y ++L VHDE+V E P + + + + S+M Sbjct: 910 IQGSSADIIKIAMVRLHQVLRPYQTKLLLQVHDELVFEVPPSEWDELQLQIKSVM 964 >gi|70726235|ref|YP_253149.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] gi|68446959|dbj|BAE04543.1| DNA polymerase I [Staphylococcus haemolyticus JCSC1435] Length = 876 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 89/530 (16%), Positives = 184/530 (34%), Gaps = 68/530 (12%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 Y + I + +D + D + P +L+++L +ET + +++ ++ + Sbjct: 328 YLQD-TILKFGF-YDGVDHVVIDSDQLKEYP-ELIKWLENETTEKIVYDAKKTYVVAHR- 383 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSL--KNACLALNFSEHLTKMEEGKALIARFCKGSID 141 +DI K + +LA PS + N++++ + + I+ + KG Sbjct: 384 --LDIDIKNIVFDVMLASYIIDPSRTIDDVNSVVSNYNQNFVQDD-----ISIYGKGKKR 436 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 P D H+ + CKR++ A E +++ L + E L + + + G Sbjct: 437 HVPEDTILNKHIASITEAIYACKREMVAELESHQQIDLLLNLELPLARILSEMEETGIYT 496 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--- 258 D++ + ++Q I + L +I + + L + LF + ++ ++ Sbjct: 497 DINDLRQMQSEIQGKLDLLISNIHEAAGEEF-NINSPKQLGVVLFETLELPVIKKTKTGY 555 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L D IL S + L + +S D R+ A +TG Sbjct: 556 STAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISKDNRIHTRFNQTLA-QTG 614 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLV 377 R S QN+P +R SN ++ Sbjct: 615 RLSSVDPNLQNIP------------------------VRLEEGRKIRKAFKPTSNDSVIL 650 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA I ++ +AF N +D++ T K F+ ++V+ R K + Sbjct: 651 SADYSQIELRVLAHITQDESMKEAFINEKDVHTATAMKVFDVEANEVNALMRRQAKAVNF 710 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE-------------------- 473 + Y G ++ + + + + Sbjct: 711 GIVYGISDYGLSQSLNITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKADGYVETLLHRR 770 Query: 474 -DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A + + Q Sbjct: 771 RYIPDINSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVEFDRQIKQTSY 820 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 9/58 (15%) Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETP--DTPYFSVGTLCSLM 651 +Q + DI+ M + + Y ++L VHDE++ E P + FS+ + +M Sbjct: 796 IQGSAADIIKLAMVEFDRQIKQTSYHAQLLLQVHDELIFEVPANEVEDFSL-FVEEIM 852 >gi|85858429|ref|YP_460631.1| DNA polymerase I [Syntrophus aciditrophicus SB] gi|85721520|gb|ABC76463.1| DNA polymerase I [Syntrophus aciditrophicus SB] Length = 901 Score = 241 bits (614), Expect = 3e-61, Method: Composition-based stats. Identities = 91/505 (18%), Positives = 167/505 (33%), Gaps = 64/505 (12%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 +E+ P L +L D+ + V H+ I+ + + T V A Sbjct: 369 LSEEQVFPV-LFPFLADKKIALVGHDLKTVLIVLSQKGVKVQNPL--LDTMVAAYILNPA 425 Query: 107 SSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 ++ + K + K S S P + R + + GE Sbjct: 426 RRGYELSEIVQDYLHRQVEPLRKKLVGGSSPKQSPASFPPERLRDFACRRVEAIGELAST 485 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +E E R + E L + + ++G +DL L+ ++ + + + I Sbjct: 486 LIEKMEETGLREL-FDSVEMPLVAVLAAMEEKGVLLDLHLLKEMSQELGHLLSLSEAKIY 544 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + L+ LF + ++G ++ LA + L + Sbjct: 545 ALAGERFNIA-SPKQLQTILFEKLNLPKGKKTKGG--YSTDVEVLSNLALNHELPAEILA 601 Query: 286 GSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++ KL + L ++ GR+ + A+ TGR S QN+P + Sbjct: 602 YRSMAKLKSTYIDALPSLINIRTGRIHTSYNQTVAA-TGRLSSSNPNLQNIPIRTL---- 656 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA G +V AD + IE RVLA ++ + I Sbjct: 657 --------------------EGKRIRQAFIAPPGWAIVSADYSQIELRVLAHLSEDPVLI 696 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHC 455 AFA GEDI+ T A F + ++ E R KV+ + Y A + Sbjct: 697 NAFAAGEDIHSRTAADVFGVFPEMINAEMRRQAKVINFGVLYGMSAFGLSRELGIPQKQA 756 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + +S T+ D + S + ++ A+ Sbjct: 757 QAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAERMAI 816 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ 519 + GTA +L+K A + + Sbjct: 817 NAPIQGTAADLIKMAMLRIADLIRE 841 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 35/128 (27%), Gaps = 16/128 (12%) Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK---GDCSYLNTATSQL-M 588 Q+ V + + + + + +N A QL Sbjct: 753 QKQAQAYIDGYFKKYESVKTYLDGILQQARERGYVTTLLNRRRYLPEINSVNPAVRQLAE 812 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYF 642 R +Q + D++ M G + + VHDE+V E P Sbjct: 813 RMAINAP------IQGTAADLIKMAMLRIADLIREKGMKSAMTMQVHDELVFEVPQEEKI 866 Query: 643 SVGTLCSL 650 ++ L Sbjct: 867 ALMNLVRQ 874 >gi|325474189|gb|EGC77377.1| DNA polymerase I [Treponema denticola F0402] Length = 944 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 95/575 (16%), Positives = 178/575 (30%), Gaps = 115/575 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPV-------KLWDRTEQSAMPSDLLQ 59 D ET S PL A + + A + + E++ Sbjct: 372 DCETTSEDPL----------NAEVCGFSLALKEGEAYYFPLKAPCPELGEEAPKLIAFKD 421 Query: 60 Y------LRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSS---- 108 L D + + HN F+ + L I + + T + A S Sbjct: 422 AQRAVTKLFDSKMTLIMHNGKFDIQAALSSKLASGISANLF-DTMIAAWLLDPARSSYGM 480 Query: 109 --LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L + L + ++ G+ F ++ Y D Sbjct: 481 DKLAESILGVKTIRFKDLVKTGQN----FSDIPLN----------------EACPYAAED 520 Query: 167 VEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T +K+ +PL D E + L + +G + + + + + +E Sbjct: 521 ADITFRFYKKFLPLLKKNNLEKLFFDLEMPITKLLTEMEIKGIFLKGEELTAYSKELGKE 580 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 + ++DI +L + L+ LF + ++ T S+L + Sbjct: 581 LEDCEKDIYRLVGHEFNIA-SPKQLQEVLFEERKLTPGKKTKTGYSTDTSVLENLASEDP 639 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 IL+ A + +TL + +GR+ + G + TGR S QN+P + Sbjct: 640 VPAKILDYRALAKLKSTYTDTLPKMTDKNGRIHTSFIQTG-TATGRLSSRDPNLQNIPIR 698 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 G +R A G+ L+ AD + IE +LA ++ Sbjct: 699 ------------------------GNEGRKIREAFQAEKGRVLISADYSQIELVILAHLS 734 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + ++AF G D++ T + F I VS++ R I K + + Y A + Sbjct: 735 KDQNLVEAFNKGIDVHAKTASLIFAVDIKDVSQDMRRIAKTINFGVMYGMSAFRLASSLR 794 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------- 488 ++ + S F E+ + Sbjct: 795 IPRKRADEFIKAYFATYSGVSGFMAQVCQEAEQRGYVETLMGRRRYLPAINSKNKVEKAG 854 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 AV + GTA ++VK A + + + D Sbjct: 855 AERIAVNTPIQGTAADIVKLAMLEVDKALKKQKLD 889 >gi|225016393|ref|ZP_03705585.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] gi|224950835|gb|EEG32044.1| hypothetical protein CLOSTMETH_00296 [Clostridium methylpentosum DSM 5476] Length = 890 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 68/402 (16%), Positives = 137/402 (34%), Gaps = 68/402 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E L + + + G+++D+ V E++ E +++ ++I + T Sbjct: 489 LHDIELPLSEVLANMENEGFQVDVAGVRTFGEMLQVEIERITQEIYGYAGEEF-NINSTR 547 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----- 294 L LF G+ ++ + + +L + L + KL++ Sbjct: 548 ELGAILFDKLGLPTGKKTK--TGYSTNVDVLEKLIPKHPIAGLVLEYRKLTKLSSTYVTG 605 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + D R+ + +RTGR S QN+P + Sbjct: 606 LLKVTGPDQRVHSVFR-QTETRTGRISSTEPNMQNIPIRT-------------------- 644 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R +A G L+ AD + IE R+LA I+ + I AF G DI+ T + Sbjct: 645 ----ELGSQMRKFFVAKPGCVLLDADYSQIELRILAHISNDSRMITAFREGADIHTATAS 700 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470 + F P + + E R K + + Y GA + + ++ + Sbjct: 701 QVFGVPAEVLPAELRRRAKAINFGIVYGIGAYSLSQDINVSVAEAKEYIENYLHTYSGVR 760 Query: 471 -TFEDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKA 509 D ++ + +++ + A+ + GTA +++K A Sbjct: 761 QYMNDIVESSAKSGYVKTMFGRVRHLPEITSSNHNTKAFGERVALNTPIQGTAADIIKIA 820 Query: 510 WRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541 + Q +LQ+ +L + + + Sbjct: 821 MVKVYRRLKEEGLSAQLILQVHDELLIEVSKADAPRAKVILK 862 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 44/118 (37%), Gaps = 8/118 (6%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGK 596 A+ ++ ++ ++ SS + Y G +L TS + +G + Sbjct: 743 AEAKEYIENYLHTYSGVRQYMNDIVESSAKSGYVKTMFGRVRHLPEITSSNHNTKAFGER 802 Query: 597 LTENI-VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTL 647 + N +Q + DI+ M + + G ++L VHDE++ E + Sbjct: 803 VALNTPIQGTAADIIKIAMVKVYRRLKEEGLSAQLILQVHDELLIEVSKADAPRAKVI 860 >gi|33241967|ref|NP_876908.1| DNA polymerase I [Chlamydophila pneumoniae TW-183] gi|33236477|gb|AAP98565.1| DNA-directed DNA polymerase I [Chlamydophila pneumoniae TW-183] Length = 870 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 103/509 (20%), Positives = 180/509 (35%), Gaps = 82/509 (16%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPS 107 E + + L + E + +N + GI I + + + G Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISYDLALAEHLTNGGGKI 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCK-- 164 S ++ + F+E RF K +S P Q + F Y Sbjct: 407 SFQSLLVNHGFTETAH----------RFAKEWGNSGLPIGRLPEQPEQYFGEFVAYLPII 456 Query: 165 RDV---EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +D E R+ + LSD E L + ++ G +D++ + L+ L E L Sbjct: 457 KDAILEEINRKNLNHI--LSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLT 514 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-----HSNITQLAKD 276 E+I L+ G + + L L+ G+ +D ++ T +L H I +L Sbjct: 515 EEIYDLSGGPF-NIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLAF 573 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + +L S+ + L + V S R+ + GA TGR + QN+P + Sbjct: 574 RTIEKLLSTY-----VKALPKQVDSHTQRIHPSFDQTGAV-TGRLACRDPNLQNIPIRSE 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAG 394 +R ++ + AD + IE R LA ++ Sbjct: 628 R------------------------GILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQ 663 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 + AF +GEDI+ T ++ F+ P+++VSKEQR K + + Y G AKV K Sbjct: 664 DKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVLKI 723 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES--------------------HHLWMQDQYP 490 +Q + + F + ++ + Sbjct: 724 SIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEFPGSRAASG 783 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 FAV ++ G+A EL+K A Q + Q Sbjct: 784 RFAVNTRIQGSAAELIKLAMLDISQAIKQ 812 >gi|160938046|ref|ZP_02085403.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] gi|158439040|gb|EDP16795.1| hypothetical protein CLOBOL_02939 [Clostridium bolteae ATCC BAA-613] Length = 930 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 68/396 (17%), Positives = 140/396 (35%), Gaps = 65/396 (16%) Query: 155 AWQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 AW+ + + L+ +D E L + G +++ + + + + Sbjct: 510 AWKAAAPLAGQLKDTGMYSLY------TDIEMPLIYSLFHMEQEGVKVERAELKEYGDRL 563 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 KL+++I + T + L LF + ++ + + +L Sbjct: 564 KVGIAKLEQEIYQETGHEF-NINSPKQLGEILFEQMELPGGKKTKTG--YSTAADVLEKL 620 Query: 274 AKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 A D + + + KLN+ L+ + DGR+ G + TGR S Q Sbjct: 621 APDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDGRIHGKFN-QTITATGRISSTEPNLQ 679 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R + G V AD + IE R+ Sbjct: 680 NIP------------------------VRMALGREIRKVFVPKEGCVFVDADYSQIELRI 715 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 LA ++G++ I+A+ + +DI+ T ++ F+ P+D+V+ QR K + + Y G Sbjct: 716 LAHMSGDERLIEAYRSAQDIHAITASQVFHVPLDEVTPLQRRNAKAVNFGIVYGISAFGL 775 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483 ++ + ++ + TF D + +S + Sbjct: 776 SEGLSISRKEAVEYIDKYFETYPGVKTFLDGLVKQGKEQGYVTTLYGRRRPIPELKSANF 835 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A+ + GTA +++K A A + + + Sbjct: 836 MQRQFGERVAMNSPIQGTAADVMKIAMIAVDRELKK 871 >gi|119356373|ref|YP_911017.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] gi|119353722|gb|ABL64593.1| DNA polymerase I [Chlorobium phaeobacteroides DSM 266] Length = 946 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 101/553 (18%), Positives = 183/553 (33%), Gaps = 97/553 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQS------AMPSDL 57 L +D ET S + L + +P + W L Sbjct: 375 LAVDTETTS------------LDTFQAELVGISLSIKPKQAWFVYFGKGGVDRRVALDML 422 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 L + ++ N ++ ++ KK GIDI + T + + + LAL Sbjct: 423 KPVLENPSLRKTGQNLKYDLLVLKKY-GIDINPVAF-DTMLASYVLDPEAKHNLDDLALR 480 Query: 118 -FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 S T +E GK ++ + Y C A+ Q V + Sbjct: 481 HLSIKTTTYDELVADGKKKMSILDVPPGELSDYACQDADLALRLQE--------VFKEKL 532 Query: 173 LFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L ++ L + E L + T+ G ID D + K + ++++ +L E I + G Sbjct: 533 LQEKDLLWLCENIEFPLVPVLATMEYHGISIDTDHLKKTETTVSKQIGQLSEKIFE-ASG 591 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L LF I G+ ++ + + LA + + ++ Sbjct: 592 RVFNLDSPKQLAHILFDILGLPSGKATKTGF--STNVQVLEDLAPIHPVAQDLLEYRSLQ 649 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL L + ++ G+L + + + TGR S QN+P + Sbjct: 650 KLRNTYIEALPKMINPLTGKLHTSFNQH-VTATGRLSSSHPNLQNIPIRTL--------- 699 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I S L+ AD + IE RV A I+G++ ++AF Sbjct: 700 ---------------IGKEIRRAFIPSNPENLLLSADYSQIELRVAAEISGDEKLMEAFR 744 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 N EDI+ T FNT +++ E R K + + Y G ++ + + Sbjct: 745 NREDIHSATARTIFNTT--EITPEMRRKAKEVNFGVLYGIMPFGLSRRLNISRNEAKNII 802 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ S + MQ A+ + Sbjct: 803 DTYTEKYPGIFNALQQIISDGKERGYVSTLLGRRRYIPDLNSRNKNMQKAAERAAMNTPI 862 Query: 499 IGTACELVKKAWR 511 GTA +++K A Sbjct: 863 QGTAADIIKCAMN 875 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K ++L VHDE++ ETP+ + TL Sbjct: 862 IQGTAADIIKCAMNLCSTQLRLHKMKSVMLLQVHDELLFETPENEKHRLKTLVE 915 >gi|242373981|ref|ZP_04819555.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] gi|242348335|gb|EES39937.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1] Length = 891 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 85/554 (15%), Positives = 178/554 (32%), Gaps = 72/554 (12%) Query: 7 DIET-RSPQP---LPKVGVWAYAEQAVIT---LCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 D+ET L + E + + + + E SDL++ Sbjct: 316 DVETDFQHIDFKNLSHATIHFELEDTNYLKDNILKFGLYTDDTHIVINAEDIKQHSDLIE 375 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNA-CLALN 117 +L D + +++ + + +DI + +LA ++ + + Sbjct: 376 WLEDAQTVKTVYDAKKTYVAAHR---LDINIQNVQFDVMLASYIIDPSRAIDDVKSVVSL 432 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + ++ K ++ + KG P D HV + K +E + + ++ Sbjct: 433 YGQNYVKDN-----VSIYGKGKKHHIPEDNILNEHVASITEAIASAKPLMEEQLKEYNQV 487 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L+D E L + + + G D++ + ++ I ++ L ++I + + Sbjct: 488 ELLADLELPLAKILSEMEEIGIYTDVNDLKHMENEIQEKLDVLIKNIHEAAGEEF-NINS 546 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L + LF + ++ ++ T +L + IL S + Sbjct: 547 PKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLKGEHPIIEHILEYRQLSKLQSTYVEG 606 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + +S D R+ A +TGR S QN+P + Sbjct: 607 LQKVISKDNRIHTRFNQTLA-QTGRLSSVDPNLQNIPIR--------------------- 644 Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R S ++ AD + IE RVLA I ++ +AF +G DI+ T Sbjct: 645 ---LEEGRKIRKAFKPTSEDSVILSADYSQIELRVLAHITQDESLKEAFIHGHDIHTATA 701 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 K FN + V R K + + Y G ++ + + + Sbjct: 702 MKVFNVEANDVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGV 761 Query: 470 STFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + S + ++ A+ + G+A +++K Sbjct: 762 KQYMSDIVKDAKAQGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKL 821 Query: 509 AWRAKHQGVLQLWK 522 A ++ V Sbjct: 822 AMVKFNEKVKNTNY 835 >gi|295696996|ref|YP_003590234.1| DNA polymerase I [Bacillus tusciae DSM 2912] gi|295412598|gb|ADG07090.1| DNA polymerase I [Bacillus tusciae DSM 2912] Length = 890 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 71/392 (18%), Positives = 136/392 (34%), Gaps = 66/392 (16%) Query: 161 EYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 KRD+E + L PL + E L + + G R+D + L E + E + Sbjct: 473 PALKRDLEI-----RGLWPLYHNLELPLSFVLAKMERTGVRVDATRLRSLGETFSTEIAR 527 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+E+I KL + L LF G+ ++ + +LA + Sbjct: 528 LEEEIYKLAGTTF-NLNSPKQLAEILFDKLGLPPQKKTK--TGYSTGADVLEKLAPYHEI 584 Query: 280 NRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + ++KL + L + + G++ Q + TGR S QN+P Sbjct: 585 VQRILDWRQLIKLQSTYIEGLLKVIRPETGKIHTCFQ-QAVTATGRLSSTDPNLQNIP-- 641 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWI 392 +R I S G K+V AD + IE RVLA Sbjct: 642 ----------------------VRVEEGRRLRQAFIPSESGWKIVSADYSQIELRVLAHF 679 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 + + ++AF + DI+ T A+ F P ++V+ R K + + Y G ++ Sbjct: 680 SKDPALVQAFRDDLDIHARTAAEVFEVPQEQVTPGMRRQAKAVNFGIVYGISDYGLSQNL 739 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487 + ++ ++ + A + + ++ Sbjct: 740 GIPRKEAAEFIARYFAKFPRVKSYMEETVAAARKNGFVTTLLGRRRYLPDIHSSNYNLRS 799 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + G+A +++K+A + + + Sbjct: 800 FAERTAMNTPIQGSAADIIKRAMVEVDRRLTE 831 >gi|1633576|gb|AAB17467.1| similar to proofreading 3'-5' exonuclease and polymerase [Treponema pallidum] Length = 997 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 94/559 (16%), Positives = 166/559 (29%), Gaps = 92/559 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112 L + DET+ V HN F+ + + + + T V A + Sbjct: 476 HQLRRLWNDETLTLVMHNGKFDYHVMHRAGVFEHCACNIFDTMVAAWLLDPDRGTYGMDV 535 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 A F EE A F PY+C Y D + T Sbjct: 536 LAASFFQIRTITFEEVVAKGQTFA-----HVPYECA-----------VRYAAEDADITFR 579 Query: 173 LFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 L+ L + E L + + + G + D+V +L + ++ + Sbjct: 580 LYHYLKLRLETAGLLSVFETIEMPLLPILARMEEVGIFLRKDVVQQLTRSFSDLIQQYEH 639 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 DI L + L+ LF + + T HS + +LA+ + Sbjct: 640 DIFSLAGHEF-NIGSPKQLQTVLFQELHLPPGK--KNTQGYSTDHSVLKKLARKHPIAEK 696 Query: 283 ASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL +L++ GR+ + G + TGR S QN+P + Sbjct: 697 ILLFRDLSKLRSTYTESLAKLADQTGRVHTSFVQIG-TATGRLSSRNPNLQNIPIKS--- 752 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R A+ G +L+ AD IE LA ++ + Sbjct: 753 ---------------------TEGRKIRQAFQATVGHELISADYTQIELVALAHLSQDRN 791 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMAS 453 + AF DI+ T A FN ID V R I K + + Y A K Sbjct: 792 LLNAFRQHIDIHALTAAYIFNVSIDDVQPAMRRIAKTINFGIVYGMSAFRLSDELKISQK 851 Query: 454 HCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEF 492 + ++ + F +S + + + Sbjct: 852 EAQSFIYRYFETYPGVYAFSTQVAEQTRKTGYVTSLAGRRRYIRTIDSRNTLERARAERM 911 Query: 493 AVKDKLIGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 A+ ++ +A ++VK A A+ QL + + + + + Sbjct: 912 ALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQVHDELIFEAPAAETAIVKEILFA 971 Query: 547 PRLVMRRHKRDVHIVLPSS 565 + I + S Sbjct: 972 EMEHAVELSIPLRIHVESG 990 Score = 40.5 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 7/80 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLT 627 G Y+ T S+ ER ++ N +Q+ + DI+ M + ++L Sbjct: 889 GRRRYIRTIDSRNTLERARAERMALNTQIQSSAADIVKIAMIAIQRAFARRPLRAQLLLQ 948 Query: 628 VHDEIVSETPDTPYFSVGTL 647 VHDE++ E P V + Sbjct: 949 VHDELIFEAPAAETAIVKEI 968 >gi|17978836|gb|AAL47553.1| DNA polymerase [Caldanaerobacter subterraneus subsp. yonseiensis] Length = 871 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 93/537 (17%), Positives = 179/537 (33%), Gaps = 85/537 (15%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A+++D DL + E V+H + ++ GI+ SK Sbjct: 331 IAFSFDGTT-----LYSDVERLEDLREIFEREDCEFVSHEIK-DFLVKLSYKGIECKSK- 383 Query: 93 WICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ T+++A S + L H +GK Y Sbjct: 384 YLDTAIMAYLLNPSESNYDLDRVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYI 443 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 C R NH+ + ++ K L + E L + +++ G+ +D +++ Sbjct: 444 CGRCNHLFELKDKLMSFIE----EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLDRNVL 496 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 +L E I + ++ + I K + L +LF + ++ ++ T Sbjct: 497 KELSEKIDERISEILDKIYKEAGYQF-NVNSPKQLGEFLFEKLNLPVIKKTKTGYSTDSE 555 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L I+ + + + + R+ + A+ TGR S Sbjct: 556 VLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVAA-TGRISST 614 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382 QN+P +E +R I +V AD + Sbjct: 615 EPNLQNIPVRE------------------------EFGRQIRRAFIPRTKDGYIVSADYS 650 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++ ++ I+AF N EDI++ T ++ F P V+ E R KV+ + Y Sbjct: 651 QIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKVVNFGIIYG 710 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477 G AK K + + + K + + + Sbjct: 711 ISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMNRRRYIPE 770 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 S + + Q A+ + G+A +++K A +Q +LQ+ +L Sbjct: 771 INSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDEL 827 >gi|259047059|ref|ZP_05737460.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] gi|259036109|gb|EEW37364.1| DNA polymerase I [Granulicatella adiacens ATCC 49175] Length = 884 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 88/523 (16%), Positives = 188/523 (35%), Gaps = 71/523 (13%) Query: 32 LCAYAWDDEP-VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + A A+ +E V + D + + ++L D +V ++ + G D+ Sbjct: 339 VIAVAFGNEKNVFVTDL-DTAVASEVFKKWLSDASVEKHLFDTK-AAKVLAHRFGFDLKG 396 Query: 91 KRWICTSVLARTNGLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 ++ S+LA +K +A + +E A + KG P D Sbjct: 397 AKY-DVSLLAYLVDTNDIVKEISDVARRVDVTILSSDE-----AVYGKGVKIQIPEDKEV 450 Query: 150 ANHVQAWQLFGEY-CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 N A ++F + E ++ + E L + + +G R+D + +++ Sbjct: 451 WNQHLAAKVFTIAKAPEKLLKRLEENEQTHLYWEMELPLSDILARMEIQGIRVDRERLVE 510 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + + K+++++I +L + T L + LF G+ ++ ++ + + Sbjct: 511 MGVEFEERLKEIEQEIYELAGEEF-NINSTKQLGVILFEKMGLPVIKKTKTGYSTAVD-- 567 Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA + L + KLN+ L + DG++ ++TGR S Sbjct: 568 VLEKLAHQAPIVELILEYRQLAKLNSTYVEGLQAYIQEDGKIHTRF-IQNLTQTGRLSSV 626 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382 QN+P + + +R + + K++ +D + Sbjct: 627 DPNLQNIPIRTK------------------------EGRRIRYAFLPEHDDWKILSSDYS 662 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGY 441 IE RVLA IAG+ I+AF N DI+ T + F D V+ E R K + + Y Sbjct: 663 QIELRVLAHIAGDKHMIEAFKNNVDIHTNTAMRVFGISNPDDVTSEMRRQAKAVNFGIVY 722 Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------- 481 G ++ + ++ + + F + E+ Sbjct: 723 GISDYGLSQNLNISRKRAKEFIDRYLEEFQGVKDFMESIVKEAREKDYVETLFHRRRYLP 782 Query: 482 -----HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ A+ + G+A +++K A + + + Sbjct: 783 DIHSSNFNLRSFAERTAMNSPIQGSAADILKMAMIELDREMRE 825 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN 654 +Q + DIL M + +++L VHDE++ E P S+ +L +M Sbjct: 804 IQGSAADILKMAMIELDREMRERKFKANLLLQVHDELIFEVPQDELESLQSLVEGVMENA 863 Query: 655 PSWAKGLPLKAE 666 S +PL+A+ Sbjct: 864 VS--LKVPLRAD 873 >gi|283781545|ref|YP_003372300.1| DNA polymerase I [Pirellula staleyi DSM 6068] gi|283439998|gb|ADB18440.1| DNA polymerase I [Pirellula staleyi DSM 6068] Length = 966 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 100/584 (17%), Positives = 185/584 (31%), Gaps = 129/584 (22%) Query: 3 KLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAW---------------DDEPVKLWDR 47 L ID ET S QP +AE + Y++ ++E D Sbjct: 382 SLVIDTETTSVQP-------RWAE-----IVGYSFCYRDGEAWYLPIRAPENEQALCLDA 429 Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-P 106 T + + L D + V N ++ ++ ++ GI++ + T V Sbjct: 430 TAVADL---FRPVLEDPAIAKVGQNIKYDMVVL-RSAGIELRGAAF-DTMVADYLIDPGE 484 Query: 107 SSLKNACLALNFSEHL-----TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 S LA H + + GK I +D P + Sbjct: 485 RSHNLDELARRHLGHQNIEIESLIGTGKKQIR------MDQVPLAAI-----------TD 527 Query: 162 YCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D L L P + E L + + RG ++D +++L Sbjct: 528 YAAEDALVPYRLLPILEPRLEQDGLVPLFRDLEMPLVEVLAELEHRGIKVDRARLVELST 587 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + L+ +I + G + L LF + ++ ++ + + Sbjct: 588 DFSTKITALENEIYAINHGEF-NIDSRLQLAKLLFEDLKLPILKKTK--TGPSMDAEVLE 644 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 LA+ L + + KL ++L E + GR+ +L+ + TGR S Sbjct: 645 DLARLHELPKKVLEYRHLAKLRSTYVDSLQELIHPVTGRVHTSLK-QDVAATGRLSSQDP 703 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P + +RS G KL+ AD + I Sbjct: 704 NLQNIPVRT------------------------AEGRAIRSAFQPGIEGWKLMAADYSQI 739 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442 E RVLA +G+ +AFA+ DI+ ++ + V+ E R K + + Y Sbjct: 740 ELRVLAHFSGDAALAEAFASDRDIHTQVASQVYEVAPGDVTPEMRRSAKAINFGVIYGQS 799 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA---------------------- 478 G A+ + + F Sbjct: 800 PFGLARSLGIENDEAAAFISAYFAQYPGVDDFMRETLIGCRKQGYVTTIAGRRRPVTGVR 859 Query: 479 ESHHLWMQDQY---PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + H + + Q A+ + G+A +++K+A H+ + + Sbjct: 860 DPHAVNDKRQRTLPERIAINTVIQGSAADIIKRAMITVHRRLKE 903 >gi|110799426|ref|YP_696673.1| DNA polymerase I [Clostridium perfringens ATCC 13124] gi|110674073|gb|ABG83060.1| DNA polymerase I [Clostridium perfringens ATCC 13124] Length = 866 Score = 240 bits (613), Expect = 4e-61, Method: Composition-based stats. Identities = 85/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ + Y E+ Y + + ++ ++ +E ++ Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEDILK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 ++ KK LGID + C + L N+ ++EG Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435 Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + F K + + D E Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ +++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A S + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANSSNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 41.3 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N++ + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANSSNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|210623711|ref|ZP_03293995.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] gi|210153399|gb|EEA84405.1| hypothetical protein CLOHIR_01946 [Clostridium hiranonis DSM 13275] Length = 891 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 86/519 (16%), Positives = 181/519 (34%), Gaps = 89/519 (17%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN---A 112 D L + + +N + + + +I K +A +S Sbjct: 368 DFKAVLESKDIKKYGYNMKEDYVAL---MPYEIALKGMSFDIAIAEYLIDSTSTNTSECG 424 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW------QLFGEYCKRD 166 +A+ + K +E KG D T+ + + + K Sbjct: 425 AIAMKYLMKSVKSKE-----ELLGKGVKAKKFEDLTK-EELSGYISSILNTVVNAMPKMK 478 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E ++L D E L + + G ++D +++ +L + + L+E+I Sbjct: 479 EEIESTKIEKLFD--DVEMPLVEVLGNMEYTGIKVDKEMLDELGKEFTKIISSLEEEIYG 536 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L + LF + ++ ++ + + +L + Sbjct: 537 YAGEEF-NINSPKQLGVILFEKLELPVIKKTKTGYSTNAE--VLEKLKDKHPIIDKIGEY 593 Query: 287 SAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 I+KLN+ L+ ++ DGR+ T + TGR S QN+P Sbjct: 594 RQIVKLNSTYVEGLTALINPIDGRIHSTFN-QTITTTGRISSTEPNLQNIP--------- 643 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ ++ + K+LV AD + +E RVLA ++G+ I Sbjct: 644 ---------------VRMEIGRRLRAVFVSDDEKRLVDADYSQVELRVLAHMSGDQNMID 688 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +GEDI+ T ++ FN P+++V+ E R+ K + + Y G ++ Sbjct: 689 AFKHGEDIHRKTASQVFNVPVEEVTSELRSAAKAVNFGIIYGKTDFGLSEDLNIPVPQAK 748 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 ++ + + F D + +S + +++ A+ Sbjct: 749 QYIESYFAKYEKIKEFMDNIIETAEKDGYSQTMFNRRRYIPEIKSKNFMERNRGKRAAMN 808 Query: 496 DKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A + + +LQ+ +L Sbjct: 809 APIQGSAADIIKIAMVNVFRRLEKEELRSKLILQVHDEL 847 Score = 45.1 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 39/120 (32%), Gaps = 8/120 (6%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK- 596 A++ + K + ++ ++ + YS + GK Sbjct: 745 PQAKQYIESYFAKYEKIKEFMDNIIETAEKDGYSQTMFNRRRYIPEIKSKNFMERNRGKR 804 Query: 597 -LTENIVQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + K ++L VHDE++ ETP V + Sbjct: 805 AAMNAPIQGSAADIIKIAMVNVFRRLEKEELRSKLILQVHDELIVETPIDELEKVEKIVR 864 >gi|302039429|ref|YP_003799751.1| DNA polymerase I [Candidatus Nitrospira defluvii] gi|300607493|emb|CBK43826.1| DNA polymerase I [Candidatus Nitrospira defluvii] Length = 881 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 101/558 (18%), Positives = 183/558 (32%), Gaps = 101/558 (18%) Query: 14 QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNS 73 + + + A A+ + W P L++ LRD + + + Sbjct: 330 ADIRGCALGRFDGSA-------AFVQGEARDW--------PQPLVECLRDGSKLKAVQDL 374 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA 133 + + GID+ + T V A P+ + A+ ++ G+ Sbjct: 375 KPLLLALHRQ-GIDM-PGPYFDTMV-ADYLLNPNRRAHTLEAIAMDLLSYQLGAGEREDT 431 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDL 187 KG D + GE + L +RL D E L Sbjct: 432 --SKGPQSLFDVDEALV------RRTGEAAAVTAKVAPMLRERLKEQGSLSLFQDVEMPL 483 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + I G+ +D+ + L + + E +++ I +L G + L LF Sbjct: 484 VPVLAEIERNGFLLDVAGLQALSKELEHELEQMVGSIYRLGGGEF-NIGSPKQLATVLFE 542 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD 302 G+ + ++ +TQLA L + + KL + L + V+ + Sbjct: 543 TLGLKPLRKTK--TGYSTDEDTLTQLASQHELPAQILNYRTLTKLKSTYVDALPQLVNPE 600 Query: 303 G-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 RL +L A+ TGR S QN+P G Sbjct: 601 TKRLHTSLNQTVAA-TGRLSSTDPNLQNIP------------------------VKGDYG 635 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R IA G +L+ AD + +E R+LA ++ + ++ F GEDI++ T + FN P Sbjct: 636 LRIREAFIAPPGHQLLCADYSQVEPRILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPA 695 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 +V+++ R K + + Y G A + ++ F + + D Sbjct: 696 GEVTRDMRRAAKSVVFGIVYGISPFGLASNIGVPQADAKKYIETFFEKFAAVRALMDRNI 755 Query: 478 AESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAKHQG 516 + AV + G+A +L+K A HQ Sbjct: 756 DDGKTKGYTTTILGRRRPIPELQGGDPSQRGVGERMAVNSPIQGSAADLIKVAMIKVHQR 815 Query: 517 ----------VLQLWKDL 524 +LQ+ +L Sbjct: 816 LQNELPRCKMILQVHDEL 833 Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 32/242 (13%) Query: 453 SHCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL-VKKAW 510 GL +++ D+ Q E L Q P ++ ++ + A Sbjct: 632 GDYGLRIREAFIAPPGHQLLCADYSQVEPRILAHLSQDPRLL---QVFEKGEDIHMATAM 688 Query: 511 RAKHQGVLQLWKDLTEGFACVV----QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + ++ +D+ VV VP+ +++ + R Sbjct: 689 EIFNLPAGEVTRDMRRAAKSVVFGIVYGISPFGLASNIGVPQADAKKYIETFFEKFAAVR 748 Query: 567 RLVYSDVKGDCSYLNTATSQLMR------------ERTYGGKLTENI-VQAISRDILCEG 613 L+ ++ + T T R +R G ++ N +Q + D++ Sbjct: 749 ALMDRNIDDGKTKGYTTTILGRRRPIPELQGGDPSQRGVGERMAVNSPIQGSAADLIKVA 808 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL--PLK 664 M + ++L VHDE++ E P+ L + M + A GL PLK Sbjct: 809 MIKVHQRLQNELPRCKMILQVHDELIFEVPEQELEQAKQLVKAEMEATGA-ALGLSVPLK 867 Query: 665 AE 666 + Sbjct: 868 VD 869 >gi|256819929|ref|YP_003141208.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] gi|256581512|gb|ACU92647.1| DNA polymerase I [Capnocytophaga ochracea DSM 7271] Length = 932 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 105/609 (17%), Positives = 193/609 (31%), Gaps = 100/609 (16%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDET 65 D ET S L AE I+ C A V D+ + + + +E Sbjct: 365 DTETTSVNALE-------AELVGISFCWSAHKGYYVPFPTDKAATTKLLETFRPFFENEH 417 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 + V N ++ + + I++ + T + L+ + + Sbjct: 418 IGKVGQNLKYDLKVLQNY-NIEVRGALF-DTMIAHYLLNPDMRHNMDILSETYLNYTPIA 475 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL---FKRLIP--- 179 E LI + R+ EY D + T +L FK +P Sbjct: 476 IES--LIGK----------GKAQRSMRTVPLDQVKEYAVEDADVTWQLKNVFKEEMPKVN 523 Query: 180 ----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +D E L + + G +D+ + + + + + +L+ I + + Sbjct: 524 AEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQAGENFNLA 583 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSGSAIL 290 L LF ID T + S + A IL Sbjct: 584 -SPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILEWRQVQKLKST 642 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L V+ GR+ T + TGR S QN+P + Sbjct: 643 YVDALPLEVNKLTGRVHTTY-MQTVAATGRLSSNNPNLQNIPIRT--------------- 686 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 VR IA L+ AD + IE R++A ++ E I +F EDI Sbjct: 687 ---------PRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDI 737 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + +T AK F+ P+++V++EQR+ K + + Y G + S + + Sbjct: 738 HRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNLSRSESKELIDTYYA 797 Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ AV + G+A Sbjct: 798 TYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNAVNAPIQGSAA 857 Query: 504 ELVKKAW-RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 +++K A R +H+ + Q + + V +VP+ + K + + Sbjct: 858 DIIKIAMIRIQHELIRQ---------QLQTRMLLQVHDELVFDVPKTELNTVKPLIKEAM 908 Query: 563 PSSRRLVYS 571 S+ L Sbjct: 909 ESAFTLAVP 917 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M ++L VHDE+V + P T +V + M Sbjct: 852 IQGSAADIIKIAMIRIQHELIRQQLQTRMLLQVHDELVFDVPKTELNTVKPLIKEAMESA 911 Query: 655 PSWAKGLPLKAE 666 + A +PL A+ Sbjct: 912 FTLA--VPLVAD 921 >gi|256419758|ref|YP_003120411.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] gi|256034666|gb|ACU58210.1| DNA polymerase I [Chitinophaga pinensis DSM 2588] Length = 939 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 98/580 (16%), Positives = 181/580 (31%), Gaps = 107/580 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE---PVKLWDRTEQSAMPSDLL 58 ++ D ET G A A V + + PV D+ + A+ L Sbjct: 366 QEISFDTET--------TGTDANAVDLVGMSFSIKAGEGWYIPVP-ADKAQAQAIVDSFL 416 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + N ++ I+ K + + ++LA P + L Sbjct: 417 PLFNTTHITLIGQNIKYDMIVMK---WYGVEFNGPVFDTMLAHYLIEPEGRRGMDL---L 470 Query: 119 SEHLTKMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 S + E + LI + KG + + + EY D + T +L ++ Sbjct: 471 SAQYLQYEPVSIETLIGKKGKGQGNMRDVEIDKI---------KEYAVEDADITLQLKEK 521 Query: 177 LIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 PL D E L + + G +D+ + + E K+ +E + Sbjct: 522 FAPLLPLKAVDKVFYDVENPLVRVLTDMEYEGIALDIQALSDYSRELETEIKRAEESVYT 581 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNR 281 + L LF +D T + + +LA IL Sbjct: 582 QAGVRFNLA-SPKQLGEVLFEKLLLDPKAKKTKTGQYATGEDVLAKLANKHQIVEDILVF 640 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++ L ++ R+ + + TGR S QN+P + Sbjct: 641 RELSKLKSTYVDALPLMLNKRTNRVHTSYN-QAVAVTGRLSSNNPNLQNIPIRTDR---- 695 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 VR +A L+ AD + IE R++A I+G+ I Sbjct: 696 --------------------GREVRKAFVAKNEDYVLMSADYSQIELRIIAAISGDVHMI 735 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF G DI+ T AK + + V+ + R K + + Y G ++ Sbjct: 736 DAFRQGLDIHAATAAKVYGVELADVTADMRRNAKSVNFGIIYGVSAFGLSENLGIARGEA 795 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + S + D + S + ++ A+ Sbjct: 796 KTLIDNYFAQYPSIKKYMDDQIKSAQQNGYVETLLGRKRWLKDINSSNAVVRGYAERNAI 855 Query: 495 KDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 + GTA +++K A + H + +LQ+ +L Sbjct: 856 NMPIQGTAADMIKLAMISIHKTLKKENLRSRMILQVHDEL 895 >gi|157363023|ref|YP_001469790.1| DNA polymerase I [Thermotoga lettingae TMO] gi|157313627|gb|ABV32726.1| DNA polymerase I [Thermotoga lettingae TMO] Length = 892 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 97/570 (17%), Positives = 188/570 (32%), Gaps = 106/570 (18%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT--EQSAMPSD-----LL 58 +D+ET S P+ A I + + + + L Sbjct: 321 LDLETDSLSPI----------DAEIIGFSISLPSKESYYVPLAHKNGPNVDKKSALNNLK 370 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L +++ + N ++ + K I R +++A P + L Sbjct: 371 SILENQSAKIIGQNLKYDYSVLKMH---GIEPVRPSFDTMIAAYLLNPDEKRFNLDELAM 427 Query: 119 SEHLTKMEEGKALIA----RFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEATREL 173 KM + L F + D T+ Y D + TR L Sbjct: 428 KFLNYKMISFEELFKDTSPLFGAVTFADVSVEDATK------------YSAEDADITRRL 475 Query: 174 FK----------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++ L L E L + + G +++D + L A +L + Sbjct: 476 YEILNIKLHEADLLEVLEKIEMPLIPVLVHMELEGVYMNIDYLKDLSSKYAARMNELSQQ 535 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I + + LF I + T + + +L+++ + RL Sbjct: 536 IYNHAGEAF-NLNSPKQVAHILFDKLKIQPTKKT-STGEPSTRADVLEELSEEHPIVRLI 593 Query: 284 SSGSAILK-----LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 K L+ L + V GR+ + G + TGR S QNLP + Sbjct: 594 LEYRKYQKIKSTYLDVLPKLVHPETGRIHSSFHQTG-TATGRLSSSDPNLQNLPSK---- 648 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGED 396 S +R ++ + K++ AD + IE RVLA ++ + Sbjct: 649 --------------------QEESREIRKAVVPQRDSWKILSADYSQIELRVLAHLSNDQ 688 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG------------ 444 I+AF EDI+ T ++ F P ++V+ + R+IGK++ ++ Y Sbjct: 689 NLIEAFKKDEDIHNFTSSRIFQVPENQVTPQMRSIGKMVNFSVIYGVSPYGLSQRTGLSY 748 Query: 445 --AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPE 491 A+ F ++++ + S + + Q S + ++ + Sbjct: 749 DQAQKFIGEYFSLYPSVKEYFAKIVSYAKTHGYVRTMFGRRREVPQLRSKNASVRQEGER 808 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A+ + GTA +++K A + + Q+ Sbjct: 809 IAINTPIQGTAADIMKLAMINLYDKIKQMR 838 Score = 41.3 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M N ++L VHDE+V E PD V L Sbjct: 815 IQGTAADIMKLAMINLYDKIKQMRLQSKMILQVHDELVFEVPDEEVEIVKNLVR 868 >gi|164687872|ref|ZP_02211900.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] gi|164603147|gb|EDQ96612.1| hypothetical protein CLOBAR_01516 [Clostridium bartlettii DSM 16795] Length = 882 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 95/538 (17%), Positives = 190/538 (35%), Gaps = 91/538 (16%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 + D + + +P + L + + ++ + IL K +I Sbjct: 343 SLDGNEIYYV---NEDELPQ-IKTLLSNPEIKKHGYDLKEDYILLK---PYEIELNSMDF 395 Query: 96 TSVLARTN---GLPSSLKNACLALNFSEHLTKMEE---GKALI-ARFCKGSIDS-PPYDC 147 +A +S + + +A+ + K +E GK +F + D Y Sbjct: 396 DITIAEYLIDSKSSTSYECSAIAMKYLTRKIKSKEDLLGKGAKAKKFDEIEFDELSAYIG 455 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 N V L E ++ E LF E L + ++ G ++D D + Sbjct: 456 DILNTVNGVYLKMEEKLKETE-MDGLFYH------VEMPLVEVLGSMEYIGMKVDKDQLN 508 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 +L+E +L+ +I +L + L + LF G+ ++ ++ + Sbjct: 509 ELKEKFTTIINELENEIFELAGEPF-NINSPKQLGVVLFEKLGLPVIKKTKTGYSTNAE- 566 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWS 321 + +L + + I+KLN+ L + ++ GR+ + + TGR S Sbjct: 567 -VLEKLRDKHEIIDKITEYRQIVKLNSTYVEGLLKIINPKTGRIHSSFN-QTITTTGRIS 624 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P +R +A KLV AD Sbjct: 625 STEPNMQNIP------------------------VKTEMGRDIRKVFVADENCKLVDADY 660 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + +E RVLA ++G++ I AF +GEDI+ T ++ F+ I V+ +QR K + + Y Sbjct: 661 SQVELRVLAHMSGDENMIDAFKHGEDIHSKTASQIFDVDIKDVTSKQRIEAKAINFGIIY 720 Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WE 476 G ++ + + + F D Sbjct: 721 GKTDFGLSQDLNIPVATAKAYIDSYFNKYPKIKEFMDEAVESATETGYATTILNRRRYIP 780 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + ++ + +++Q FA+ + G+A +++K A K + +LQ+ +L Sbjct: 781 EIKASNFIVRNQGKRFAMNAPIQGSAADIIKVAMVNVYNKLKENNMKSKLILQVHDEL 838 Score = 38.6 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M N ++L VHDE++ E D + Sbjct: 802 IQGSAADIIKVAMVNVYNKLKENNMKSKLILQVHDELIVEAVDEELEMAEKIVR 855 >gi|325108005|ref|YP_004269073.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] gi|324968273|gb|ADY59051.1| DNA polymerase I [Planctomyces brasiliensis DSM 5305] Length = 932 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 104/563 (18%), Positives = 191/563 (33%), Gaps = 99/563 (17%) Query: 2 SKLFIDIETRS----PQPLPKVGVW-AYAEQAVITLCAYAWDDEPV------KLWDRTEQ 50 +++ID+ET S + V E I PV + D Sbjct: 357 EEIYIDLETTSVTAMEADIVGWAVAAKPGEAFYI----------PVRGPAGQQTMD---N 403 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNG 104 + L + + N ++ +++K+ +G+D ++ + AR++G Sbjct: 404 QEVLDIFRPLLENPRIAISNQNIKYDLLVWKRHGIELQKIGMDPMVGHYLLDAG-ARSHG 462 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L SSL + L + GK R + ID + L Sbjct: 463 L-SSLADEFLKHRMIPISELIGTGKNQ-KRMDEIDIDQVAEYASEDADA---ALQIADII 517 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 RD +EL+ D ER L + + G R+D + + + EL+ + ++L E++ Sbjct: 518 RDKLHEQELWNL---YQDVERPLIGVLAEMEFAGIRVDDEELFRQSELVGRRVEELLEEL 574 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + D + LR LF G+ + ++ S + +LA L Sbjct: 575 EGMADRPF-NPDSPKQLREVLFDEIGLPVQKRTK--TGPSTDQSVLEKLAPLHPLPAKII 631 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL ++L + ++ GR+ + A+ TGR S QN+P + Sbjct: 632 EYRQLAKLKGTYLDSLPKLINQQTGRIHASFNQVVAA-TGRLSSSDPNLQNIPIRT---- 686 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 VR I G +L+ D + IE RVLA +G+ Sbjct: 687 --------------------PEGRQVRKAFIPGEPGWELLCCDYSQIELRVLAHFSGDAA 726 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF +G+DI+ A+ F V + R + K + + Y G A Sbjct: 727 LQEAFQSGKDIHTAVAAEVFEVDEANVDSDMRRVAKAVNFGVIYGQSPYGLAAALNIPQE 786 Query: 454 HCGLDLQQFSQNVKSTSTF-EDWEQAESHHLWM--------------------QDQYPEF 492 + + S F E+ + + + ++ Sbjct: 787 QAAEFIDDYFMRYPGVSQFIEETLEQCARSGYAYTMLGRRRPITGIKNTGGRNRNMPERT 846 Query: 493 AVKDKLIGTACELVKKAWRAKHQ 515 A+ + G+A +L+K A H+ Sbjct: 847 AINTVIQGSAADLIKLAMLNVHR 869 >gi|149198195|ref|ZP_01875242.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] gi|149138797|gb|EDM27203.1| DNA-directed DNA polymerase, DNA polimerase I protein [Lentisphaera araneosa HTCC2155] Length = 1036 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 86/509 (16%), Positives = 167/509 (32%), Gaps = 85/509 (16%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D ++ + ++ + D ++ A N+ F+ + GI++ + + T V + Sbjct: 505 DLDKEE-ILKEIKPFFADSSLKFFAQNAKFDLQML-HYAGIEVKNIDF-DTLVASFICNP 561 Query: 106 PS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L+L++ + E KG D + YC Sbjct: 562 SRQFHDLDSLSLHYLNYRKISTES-----LIGKGKKQISMAD-------LPVERVATYCC 609 Query: 165 RDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 DV+ T L L + + L + + + G I+L + K+ + Sbjct: 610 EDVDITLRLRNELEAELHRRDLRNLFDEMDIPLIPVLSKMENNGISINLGTLEKISSDFS 669 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 E KK +E I L + + + LF G+ + S + LA Sbjct: 670 AELKKCEEQIHALAGHEF-NINSPKQVGVVLFEEMGLKAGKKT--ATGYSTSAEVLENLA 726 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + + R + KL + L + VS D R+ A+ TGR + Q Sbjct: 727 AESEIVRAILRHRTLSKLISTYADALPKEVSELDQRIHTRFSQTTAA-TGRLASTQPNLQ 785 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + +RS A G + D + IE R+ Sbjct: 786 NIPTRT------------------------AEGKSIRSAFQAPEGHHFISCDYSQIELRI 821 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 +A ++ + ++AF N D++ T + F T + +V+K+QR K + + + G Sbjct: 822 MAELSQDPGLLEAFNNDFDVHTHTASLVFETELSEVTKQQRYAAKAVNFGIMFGQGPYGL 881 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HL 483 AK A + + + F ++ + Sbjct: 882 AKEIGVSADEAKQFISNYFKRYPDVQKFMAKCVEDARDKGYSETSFGRRRYLPEMLSSNG 941 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRA 512 ++ +V + GTA +++K A Sbjct: 942 RIRSGAERISVNSPIQGTAADIIKIAMIK 970 Score = 44.0 bits (102), Expect = 0.092, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 588 MRERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTP 640 R R+ +++ N +Q + DI+ M ++L +HDE++ E PD Sbjct: 941 GRIRSGAERISVNSPIQGTAADIIKIAMIKVADELEKRQLKSKMLLQIHDELLFEVPDDE 1000 Query: 641 YFSVGTLC-SLMTKNP 655 + L +MT P Sbjct: 1001 LEIMKELIPQIMTDIP 1016 >gi|119494050|ref|ZP_01624605.1| DNA polymerase I [Lyngbya sp. PCC 8106] gi|119452218|gb|EAW33419.1| DNA polymerase I [Lyngbya sp. PCC 8106] Length = 927 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 104/626 (16%), Positives = 195/626 (31%), Gaps = 123/626 (19%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 ++ + L L N+ F+R++FK GI++ + T + + S Sbjct: 378 KKETVLEALRPILESNKYPKALQNAKFDRLIFK-VQGINLAGVVF-DTMLASYVLNPDDS 435 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L+ + + + K L K + T A EYC DV Sbjct: 436 HNLTELSRKYLDSGILAKSYKQL--SLSKKQTIADLDIPTAA----------EYCGLDVY 483 Query: 169 ATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 AT + +L P L D E+ L + + +G RI++D + +L + ++ Sbjct: 484 ATYLIVPKLRKELQDFPELHKLLLDIEQPLEPVLAEMEYQGIRINVDYLKQLSSQLEKKL 543 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +++++ + + L LF + + + +L D Sbjct: 544 EEIEKQAYQEAGTEF-NLGSPKQLSKLLFETLELSTKKSRKTKTGYSTDAKVLEKLKGDH 602 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + + KL + L E V R+ + TGR S QN+P Sbjct: 603 PIIDSILEHRTLAKLKSTYVDALPELVHPQTQRIHTDFN-QAITTTGRLSSSNPNLQNIP 661 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + S +R + G LV AD + IE R+LA Sbjct: 662 IRT------------------------EFSRQIRQAFLPEPGWLLVSADYSQIELRILAH 697 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++ E ++A+ DI+ T F I V+ E+R GK + + Y GA Sbjct: 698 LSDEPILVEAYKTNRDIHTVTAQFLFEKDDIKDVTPEERRFGKTINFGVIYGMGA---LR 754 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + ++ + + ++ Sbjct: 755 FSREMKVNTNKAKEFIERF----------------------------------------- 773 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 +Q +L++ L E + +G + R + + S + Sbjct: 774 ---NQQYEKLFEYLEEQKKQAISQGYVTTLLG----RRRYFHFESPSLKALKESPLEDI- 825 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GY--DIVL 626 + + +Q +R +Q S DI+ M Y ++L Sbjct: 826 --PLDELKKIGQNDAQFLRAAANAP------IQGSSADIIKIAMVKLRDVLQNYRAKLLL 877 Query: 627 TVHDEIVSETPDTPYFSVG-TLCSLM 651 VHDE+V E P + + + M Sbjct: 878 QVHDELVFEVPPEEWEELQPQIKQTM 903 >gi|217967271|ref|YP_002352777.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] gi|217336370|gb|ACK42163.1| DNA polymerase I [Dictyoglomus turgidum DSM 6724] Length = 855 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 71/399 (17%), Positives = 142/399 (35%), Gaps = 65/399 (16%) Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 Q + + K +E + + L + E L + ++ G ++D + + L + Sbjct: 427 PQKYAAYLFPLKTILEERIKKEELEFVLFNIETPLIPVLYSMEKWGIKVDKEYLKSLSDE 486 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS--------I 264 + KKL+E+I +L + L LF + + + + Sbjct: 487 FCERIKKLEEEIYELAGMKF-NLNSPKQLSEVLFERLKLPSGKKGKTGYSTSSLVLQNLL 545 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 +H + ++ + L +L S+ ++ + ++S GR+ G + TGR S Sbjct: 546 NAHPIVIKILQYRELYKLKSTY-----IDAIPNLINSQTGRVHTKFNPTG-TATGRISSS 599 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R IA +G V D + Sbjct: 600 EPNLQNIPIKS------------------------EEGRKIRRAFIADDGYYFVSLDYSQ 635 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE R++A ++ E I AF GEDI+ T A+ F P D+V R+ K + + Y Sbjct: 636 IELRIMAHLSQEPKLISAFQKGEDIHRRTAAEIFGVPEDEVDDLLRSRAKAVNFGIIYGI 695 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------------ 481 G ++ + + ++ F D E+ Sbjct: 696 SSFGLSETASITPEEAEKFIDSYFKHYPRVKLFIDKTIYEAREKLYVKTLFGRKRYIPEI 755 Query: 482 ---HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + +++ Y A+ + GTA +++K A ++ + Sbjct: 756 RSINKQVRNAYERIAINAPIQGTAADIIKLAMIEIYKEI 794 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 17/218 (7%) Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + F + + L ++ + + S +D + A ++ G + Sbjct: 618 RAFIADDGYYFVSLDYSQIELRIMAHLSQEPKLISAFQKGEDIHRRTA--AEIFGVPEDE 675 Query: 506 VKKAWRAKHQGV-LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 V R++ + V + ++ A + + R K + + Sbjct: 676 VDDLLRSRAKAVNFGIIYGISSFGLSETASITPEEAEKFIDSYFKHYPRVKLFIDKTIYE 735 Query: 565 SRRLVYSDV---KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNA 617 +R +Y + + ++ +R Y +Q + DI+ M K Sbjct: 736 AREKLYVKTLFGRKRYIPEIRSINKQVR-NAYERIAINAPIQGTAADIIKLAMIEIYKEI 794 Query: 618 TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSLMTK 653 + I+L +HDE++ E P+ LM K Sbjct: 795 EEKNLKSRILLQIHDELILEVPEEEM----EFTPLMAK 828 >gi|212550625|ref|YP_002308942.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548863|dbj|BAG83531.1| DNA polymerase I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 928 Score = 240 bits (613), Expect = 5e-61, Method: Composition-based stats. Identities = 81/555 (14%), Positives = 181/555 (32%), Gaps = 96/555 (17%) Query: 27 QAVITLCAYAWDDEPVKLWDRT--EQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKK 82 A + A+ + ++ +P+ + +T++ V N ++ + KK Sbjct: 371 SAELVGIAFTLQEGEAYFLPFFGRKRDIIPTVQLFKEIFESDTILKVGQNLKYDINVLKK 430 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNAC-LALNFSEHLTKMEEGKALIARFCKGSID 141 GI + I ++A P L N LA + + E + + S+ Sbjct: 431 Y-GIRMNYP--IFDILIAHYLINPEYLHNLDFLAKTYLNYRIINTEELIGSKKESQLSVR 487 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLD 191 P L +Y + + +L P+ E L + Sbjct: 488 QVP-----------LSLLADYACENADIVLKLKNIFEPIIRKSNFSNLFYRIELPLVFVL 536 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + + G ++D+ + ++ + + +++ I +++ I + + LF I Sbjct: 537 SDMEEFGVKLDISALKDYSVVLNRYLESIEKIIFQISG-KIFNVNSPKMVGEILFDHLKI 595 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRL 305 + + S + L K + KL +TL VS D ++ Sbjct: 596 IENSKKTKSGQYATSEGILENLKKKHPIVGEILKYRKSKKLLTTYIDTLPTLVSFIDKKI 655 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P +++ +R Sbjct: 656 HTTYN-QATTATGRLSSNSPNLQNIPIRDK------------------------EGKEIR 690 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 I + + AD + IE R++A ++ + ++AF NG+DI+ + F P+ +++ Sbjct: 691 RVFIPDDNCLFLSADYSQIELRIMAHLSEDKNMLEAFRNGQDIHSAIASIIFGVPLAEIT 750 Query: 426 KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + R K+ + Y G A+ + + ++ + D A + Sbjct: 751 CDMRRKAKITNFGIIYGISVFGLAEQLQVSRFIAKELINKYFMIFPDIKNYIDRSIAIAR 810 Query: 482 HLW---------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG---- 516 ++ ++ + G+A +++K A H+ Sbjct: 811 KDGYVETIFRRKRFLPDINSRNSVVRKYAERNSINAPIQGSAADIIKVAMNRIHRRLIDN 870 Query: 517 ------VLQLWKDLT 525 ++Q+ +L Sbjct: 871 DLQSKMIIQVHDELN 885 >gi|323484247|ref|ZP_08089615.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323694766|ref|ZP_08108924.1| DNA polymerase I [Clostridium symbiosum WAL-14673] gi|323402399|gb|EGA94729.1| hypothetical protein HMPREF9474_01366 [Clostridium symbiosum WAL-14163] gi|323501203|gb|EGB17107.1| DNA polymerase I [Clostridium symbiosum WAL-14673] Length = 890 Score = 240 bits (612), Expect = 5e-61, Method: Composition-based stats. Identities = 65/368 (17%), Positives = 130/368 (35%), Gaps = 58/368 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E + + + G + + + E + + KL+++I + T+ + L Sbjct: 492 DIEMPVIYSLYHMQEEGICVRREELRCYGERLKVQIDKLEQEIYQDTETEF-NINSPKQL 550 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 LF + ++ + + +LA + + R + KL + L+ Sbjct: 551 GEILFDRMKMPGGKKTKTG--YSTAADVLEKLAPEYPVVRKVLDYRQLTKLKSTYADGLA 608 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ GT + TGR S QN+P Sbjct: 609 AFIREDGRIHGTFN-QTITATGRISSTEPNLQNIP------------------------V 643 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G L+ AD + IE RVLA ++G++ I A+ EDI+ T ++ Sbjct: 644 RMELGREIRKVFVPQEGCVLLDADYSQIELRVLAHMSGDERLIDAYRMAEDIHAITASEV 703 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ P+++V+ QR K + + Y G ++ + ++ + F Sbjct: 704 FHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSISRKEALEYINRYFETYPEVKKF 763 Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D + +S + + A+ + GTA +++K A Sbjct: 764 LDHLVELGKEQGYVETMFGRRRPIPELKSANFMQRSFGERVAMNSPIQGTAADIIKIAMI 823 Query: 512 AKHQGVLQ 519 Q + + Sbjct: 824 RVDQRLRK 831 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M + +VL VHDE++ ET Sbjct: 797 QRSFGERVAMNSPIQGTAADIIKIAMIRVDQRLRKEKLRSRLVLQVHDELLIETWTDELE 856 Query: 643 SVGTLCS 649 V + Sbjct: 857 KVQKVLE 863 >gi|168208695|ref|ZP_02634320.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] gi|170713068|gb|EDT25250.1| DNA polymerase I [Clostridium perfringens B str. ATCC 3626] Length = 866 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 84/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ + Y E+ Y + + ++ ++ +E ++ Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEDILK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 ++ KK LGID + C + L N+ ++EG Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435 Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + F K + + D E Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ +++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKNILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A + + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 40.5 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N + + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|182624402|ref|ZP_02952186.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] gi|177910405|gb|EDT72782.1| DNA polymerase I [Clostridium perfringens D str. JGS1721] Length = 866 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 85/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ + Y E+ Y + + ++ ++ +E ++ Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKAFKEFFENEDILK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 ++ KK LGID + C + L N+ ++EG Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYNLLSLINNYLSKFPNVKEG 435 Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + F K + + D E Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ D++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A + + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N + + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|37520205|ref|NP_923582.1| DNA polymerase I [Gloeobacter violaceus PCC 7421] gi|35211198|dbj|BAC88577.1| DNA polymerase [Gloeobacter violaceus PCC 7421] Length = 938 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 91/533 (17%), Positives = 173/533 (32%), Gaps = 96/533 (18%) Query: 49 EQSAMPSD-LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 + S + +D ++ L D V N+ ++ ++ + + +LA Sbjct: 409 QGSNLETDAVVAALTPYWQDRERPKVLQNAKYDWLVLRNY---GVALAGIAFDPMLASYV 465 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 P N + L + M +AL+ + +ID+ YC Sbjct: 466 LDPEGKHNL-MTLAQNHLQITMGSYEALVPK--GQTIDAVEIAAVSR-----------YC 511 Query: 164 KRDVEATRELFKRLIPLSD-----------GERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 D T L L D E L + + +RG RID + +L + Sbjct: 512 GEDAAVTLRLVPVLQAKLDEDPRLAGIFKEIEVPLEPVLARMEERGIRIDKAYLGELAQE 571 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + ++ + L+++ L + L LF G+ + +L + + + Sbjct: 572 LDRDLESLEQEAYTLAGSKF-NLGSPKQLSDLLFNKLGLSAKKSRKTSLGYSTDAAVLEK 630 Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 L D + S + KL + L V R+ + TGR S Sbjct: 631 LRDDHPIVEAILSYRTLAKLKSTYVDALPLLVDPRTDRVHTDFN-QTVTTTGRLSSSNPN 689 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + S +R + G LV AD + IE Sbjct: 690 LQNIPVRT------------------------SFSRRIRRAFVPEPGWLLVAADYSQIEL 725 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA + E ++AF G D++ T ++V+ E+R + K++ + Y GA+ Sbjct: 726 RILAHLTQEPVLLEAFQTGGDVHTLTARLLLG--REEVTSEERRLAKIINYGVVYGMGAR 783 Query: 447 VF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYP----- 490 F A+ ++ F + + F + + + L + + Sbjct: 784 RFARETGVSATEAEDFIKAFYRRYPAVFGFMEQTRRMAVEQGYVETLLGRRRYFRGLGQL 843 Query: 491 ---------EFAVKDKLIGTACELVKKAWRAKHQ----GVLQLWKDLTEGFAC 530 A + GTA +++K A Q +L + + Sbjct: 844 NQRDREGALRAAFNAPIQGTAADIIKIAMVRLEQTLAGRRTRLLLQVHDELVF 896 >gi|2506365|sp|P80194|DPO1_THECA RecName: Full=DNA polymerase I, thermostable; AltName: Full=TAC polymerase 1 gi|1470115|gb|AAB81398.1| thermostable DNA polymerase [Thermus caldophilus] Length = 834 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 70/377 (18%), Positives = 130/377 (34%), Gaps = 57/377 (15%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K L + E+ L + + G R+D+ + L +A+E ++L+E++ +L + Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 L LF + + ++ T K S + + L + + + KL Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545 Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L V GRL A+ TGR S QN+P + Sbjct: 546 TYVDPLPSLVHPNTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A G LV D + IE RVLA ++G++ I+ F G+DI Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464 + T + F P + V R K + + Y A + ++++ Q Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQ 700 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + + + E +++ A + GTA Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760 Query: 504 ELVKKAWRAKHQGVLQL 520 +L+K A + ++ Sbjct: 761 DLMKLAMVKLFPRLREM 777 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%) Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555 + G E V R + + + QE VA + R + + Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706 Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + L R+ Y + G Y+ +++ R ++ N+ VQ + D++ Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766 Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 M + G ++L VHDE++ E P V L Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQAGAEEVAALAK 806 >gi|319892738|ref|YP_004149613.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] gi|317162434|gb|ADV05977.1| DNA polymerase I [Staphylococcus pseudintermedius HKU10-03] Length = 875 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 97/561 (17%), Positives = 191/561 (34%), Gaps = 70/561 (12%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 +D E + + + P +L+ +L DET H++ I K++ DI + + Sbjct: 338 YDGEQYVVIPFDKVNEYP-ELVAWLEDETTQKWVHDAKKTYIAMKRS---DIAIENVVFD 393 Query: 97 SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 ++LA PS + H + + KG P D H+ + Sbjct: 394 TMLASYIIDPSR--TIEDVHSVMTHFDQTFVQDDVSVY-GKGKSFHIPEDGVLDKHIASI 450 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + + E ++ LS+ E L L+ + G D+D + +++ +I E Sbjct: 451 LDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDTLKEMETVIQTE 510 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 +L E I + + L + LF + ++ ++ T +L Sbjct: 511 LDQLIEQIHEQAGEKF-NINSPKQLGVILFEKLELPVIKKTKTGYSTAVDVLEKLQNAHP 569 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 D IL S + L + + DGR+ A +TGR S QN+P + Sbjct: 570 IIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLSSVDPNLQNIPIR 628 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWI 392 +R ++ ++ AD + IE RVLA I Sbjct: 629 ------------------------LEEGRKIRKAFKSTHEDYVILAADYSQIELRVLAHI 664 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 G+ +AF + ED++ TT K FN D+V+ R K + + Y G ++ Sbjct: 665 TGDPTLQQAFNDNEDVHTTTAMKVFNVAADEVTSLMRRQAKAVNFGIVYGISDYGLSQSL 724 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487 + + + + D S + ++ Sbjct: 725 GITRKEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRG 784 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 A+ + G+A +++K A +Q +++ + Q + + VP Sbjct: 785 FAERTAMNSPIQGSAADIIKLAM-------VQFHREVQKTSFKA-QLLLQVHDELIFEVP 836 Query: 548 RLVMRRHKRDVHIVLPSSRRL 568 + + + V ++ + +L Sbjct: 837 KDEVDEFGKFVEEIMAHALQL 857 Score = 44.3 bits (103), Expect = 0.058, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 16/170 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 K+ A + V R + + G++ +++ A+R + Sbjct: 686 MKVFNVAADEVTSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKEAQRFIDDYLNHF 742 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 K + ++ +++ Y + Y+ TS+ R + + N +Q + DI Sbjct: 743 PGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNLRGFAERTAMNSPIQGSAADI 802 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMT 652 + M + ++L VHDE++ E P G + +M Sbjct: 803 IKLAMVQFHREVQKTSFKAQLLLQVHDELIFEVPKDEVDEFGKFVEEIMA 852 >gi|296132483|ref|YP_003639730.1| DNA polymerase I [Thermincola sp. JR] gi|296031061|gb|ADG81829.1| DNA polymerase I [Thermincola potens JR] Length = 886 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 84/502 (16%), Positives = 164/502 (32%), Gaps = 90/502 (17%) Query: 47 RTEQSAMPSDLLQYLRDETVMCV-----AHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 + P+D L + D TV+ H++ IL ++ LG + T + A Sbjct: 365 LAGEELQPADKLTRILD-TVLWTKGWVCFHDAKRTDILLRR-LGNKPVRAGF-DTMLAAY 421 Query: 102 TNGLPSS-LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 S L A L++ + E FC + D + Sbjct: 422 LLDPSVSNLDLAALSIKYLGQELSPGEDY---RSFCAQA------DIILRLVPVLHEKLA 472 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 E D+ D E L + + G ++D + + + ++ E ++ Sbjct: 473 ELNMLDL------------YFDVEMPLLHILADMEFSGVKLDKEYLEAMSVDLSTEIDRI 520 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 DI +L + T L LF G+ ++ ++ + LA+ + Sbjct: 521 TGDIYRLAGEEF-NINSTRQLGTILFEKLGLPVIKKTK--TGYSTDVEVLETLAERHEIV 577 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++KL + L ++ G++ T + TGR S QN+P + Sbjct: 578 ARVLHYRQLVKLKSTYVDGLIPLINPVTGKVHTTFN-QTVTATGRLSSTEPNLQNIPIR- 635 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIA 393 +R + S G ++ AD + IE R+LA ++ Sbjct: 636 -----------------------MEEGRRIRKAFVPSEPGWIILSADYSQIELRILAHLS 672 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 G++ ++AF N EDI+ T A+ F +++V+ E R+ K + + Y G AK Sbjct: 673 GDERFVQAFRNDEDIHTRTAAEVFGVSLEEVTGEMRSRAKAVNFGIVYGISDFGLAKNIS 732 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY-------------------- 489 ++ + + + + Sbjct: 733 VSRKEARQYIENYFARYAGIKKYLEETVRLAREQGYVTTLLNRRRYLPDILSPNRNIRSF 792 Query: 490 -PEFAVKDKLIGTACELVKKAW 510 A+ + G+A +++K A Sbjct: 793 GERTAMNTPIQGSAADIIKLAM 814 >gi|86140808|ref|ZP_01059367.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] gi|85832750|gb|EAQ51199.1| putative DNA polymerase I [Leeuwenhoekiella blandensis MED217] Length = 948 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 100/571 (17%), Positives = 185/571 (32%), Gaps = 115/571 (20%) Query: 1 MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP---- 54 M + + D ET PL QA + A++ W++T+ +P Sbjct: 372 MKQTSVCFDTETTDLDPL----------QAELVGIAFS--------WEKTKGFYVPFPSE 413 Query: 55 ----SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GL 105 L++ LR E + + N ++ + K D+ K + +++A Sbjct: 414 KEEVQKLIEALRPFFEAEEIEKIGQNLKYDIKVLAKY---DVEVKGKLFDTMIAHYLINP 470 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 LA + + E LI + K + EY Sbjct: 471 DMRHNMDVLAETYLNYTPVSIE--ELIGKKGKNQKSMADVPVDQQT---------EYAVE 519 Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 D + T +L + + E L + + G +D + + L E + Sbjct: 520 DADVTLQLKEHFQKELGEANTQKLFDEIEIPLVQVLADMELEGINLDQEFLGSLSEALNN 579 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + L++ I + + L LF + T + + ++ LA Sbjct: 580 DIASLEKSIYEEAGEEF-NIGSPKQLGEILFDKLKLVDKPKKTRTGQYSTAEDVLSYLAP 638 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D + + + KL + L V+ GR+ + TGR S QN Sbjct: 639 DHEIVQHVLDYRGLSKLKSTYVDALPAQVNAKTGRVHTDY-MQTVAATGRLSSNNPNLQN 697 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388 +P + VR + L+ AD + IE R+ Sbjct: 698 IPIRTER------------------------GRQVRKAFVPRNEDYVLLAADYSQIELRI 733 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 +A ++ E+ +KAF GEDI+ +T AK FN PID+V++EQR+ K + + Y G Sbjct: 734 IAALSQEETMMKAFQEGEDIHASTAAKVFNVPIDEVTREQRSNAKTVNFGIIYGVSAFGL 793 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------------- 484 + S + + + + + + Sbjct: 794 SNQTDLTRSESKELIDTYYKTYPKLRNYMSEQVDFARENGYVSTVLGRRRYLKDINSSNA 853 Query: 485 -MQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 ++ AV + G+A +++K A H Sbjct: 854 VVRGAAERNAVNAPIQGSAADIIKIAMIKIH 884 >gi|94985766|ref|YP_605130.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] gi|94556047|gb|ABF45961.1| DNA polymerase I [Deinococcus geothermalis DSM 11300] Length = 907 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 87/463 (18%), Positives = 149/463 (32%), Gaps = 78/463 (16%) Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---------LS 181 L+A + + P R W E T L + L P Sbjct: 452 LVAYLLDPANTNMPIVAERYLRT-TW---PEDAATRAAITYRLLQDLPPHLDEARRKLYE 507 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E+ L + + + RG R+D D + L E +A L+ +I +L + R L Sbjct: 508 EVEKPLSAVLKRMEVRGVRLDSDYLRGLSEALAGRIATLEAEIHRLAGREF-AIRSRDQL 566 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 L+ G+ ++ T K + S + L + + + KL + L Sbjct: 567 ETVLYDELGLASGKKTKLTGKRSTAVSALEPLRNEHPIIPALLEYRELEKLRGTYLDPLP 626 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 V+ GRL T A+ TGR S QN+P + Sbjct: 627 NLVNPRTGRLHTTFSQTTAA-TGRLSSLNPNLQNIPIRS--------------------- 664 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R IA G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 665 ---ELGREIRKGFIADEGYCLISADYSQIELRLLAAIADDPLMQQAFREGADIHRRTAAQ 721 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471 D ++ QR K + + Y A + + + Sbjct: 722 VLGLAEDAITPNQRRAAKTVNFGVLYGMSAHRLSNELGIPYAEAAQFIDVYFNTYPGIRR 781 Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + +S + +++ A + GTA +++K A Sbjct: 782 YIERTLDFGREHGYVETLYGRRRYVPELKSQNRVIREAGERLAYNMPIQGTAADIIKIAM 841 Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 Q +LQ+ +L + + R V Sbjct: 842 VRLDQELDALGARLLLQVHDELLIEAPATQADRVAALTREVME 884 Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 17/192 (8%) Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 A + MQ + E A D TA +++ A A + K + G + Sbjct: 697 AIADDPLMQQAFREGA--DIHRRTAAQVLGLAEDAITPNQRRAAKTVNFGVLYGMSAHRL 754 Query: 538 --------ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLM 588 A + +V +R + L R Y + G Y+ SQ Sbjct: 755 SNELGIPYAEAAQFIDVYFNTYPGIRRYIERTLDFGREHGYVETLYGRRRYVPELKSQNR 814 Query: 589 RERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643 R G +L N+ +Q + DI+ M + G ++L VHDE++ E P T Sbjct: 815 VIREAGERLAYNMPIQGTAADIIKIAMVRLDQELDALGARLLLQVHDELLIEAPATQADR 874 Query: 644 VGTLC-SLMTKN 654 V L +M + Sbjct: 875 VAALTREVMEQA 886 >gi|134299456|ref|YP_001112952.1| DNA polymerase I [Desulfotomaculum reducens MI-1] gi|134052156|gb|ABO50127.1| DNA polymerase I [Desulfotomaculum reducens MI-1] Length = 883 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 91/511 (17%), Positives = 165/511 (32%), Gaps = 109/511 (21%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--------LKNACLA 115 E+V H++ + I++ + T V A +S L++ + Sbjct: 386 ESVKKYFHDAKQALWMLHHH-SIELKALA-ADTMVSAYLLNPTASNYDINDVALEHLGMV 443 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L M I R + +LF + +R + Sbjct: 444 LPAEGETA-MASRAEAIRRLAQ-------------------KLFEKLAERQED------- 476 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 RL L+ E L + + G +D + + + + L I +L + Sbjct: 477 RL--LTQVELPLVRILSEMEIAGVAVDKQGLQDMSVELQTVTETLTTKIHELAGENF-NI 533 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 L LF + ++ ++ + +LA++ + L + KL Sbjct: 534 NSPKQLGPILFEKLKLPVLKKTK--TGYSTDAEVLEKLAEEHEIVALILEYRQMAKLKST 591 Query: 293 --NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L+ V GRL T + TGR S QN+P + Sbjct: 592 YTDGLAALVDPQTGRLHSTF-HQTVTATGRLSSAEPNLQNIPIR---------------- 634 Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R I G ++ AD + IE RVLA ++ ++ + AF G+DI Sbjct: 635 --------LETGRKIRKVFIPRQRGNLILTADYSQIELRVLAHMSQDESFLDAFRQGQDI 686 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T ++ F P+D+V+ E R+ K + + Y G A+ K + + Sbjct: 687 HTRTASEVFGVPMDQVTSEMRSRAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFA 746 Query: 465 NVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------------AVKDKLIGTAC 503 + D E+ L + PE A+ + GTA Sbjct: 747 RCPGVRQYIDRVIKEAKETGYVNTLLNRRRYLPELFSKNFNIRNFGERAAMNTPIQGTAA 806 Query: 504 ELVKKAWRA----------KHQGVLQLWKDL 524 +++K A Q VLQ+ +L Sbjct: 807 DIIKLAMVKISQQLKEQNLSSQMVLQVHDEL 837 Score = 45.5 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 55/166 (33%), Gaps = 15/166 (9%) Query: 497 KLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVM 551 ++ G + V R++ + G++ D V + V Sbjct: 693 EVFGVPMDQVTSEMRSRAKAVNFGIVYGISDFGLARDLKVSRKEAQGYIDHYFARCPGVR 752 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 + R + + + + YL S+ R +G + N +Q + DI+ Sbjct: 753 QYIDRVIKEAKETGYVNTLLNRR---RYLPELFSKNFNIRNFGERAAMNTPIQGTAADII 809 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 M ++ +VL VHDE++ + P+ S+ L Sbjct: 810 KLAMVKISQQLKEQNLSSQMVLQVHDELIFDAPENEIESLIMLVRQ 855 >gi|227484612|ref|ZP_03914928.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] gi|227237332|gb|EEI87347.1| possible DNA-directed DNA polymerase I [Anaerococcus lactolyticus ATCC 51172] Length = 877 Score = 240 bits (612), Expect = 6e-61, Method: Composition-based stats. Identities = 97/558 (17%), Positives = 190/558 (34%), Gaps = 75/558 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S+L D+T+ ++ + E +L K +DI +L PS Sbjct: 355 SELKNIFEDKTINKISFDIKEEMVLLDK---LDIDLIGPYDDLMLMHYLIDPSRSSYDLK 411 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD----VEAT 170 L+ S +++ ++LI + + Y + + D V Sbjct: 412 LLSQSYLTYELDSDESLIGK----GAKTKKYAEVDQDDLAKLLASQVNAIEDSRDKVFKN 467 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ + + E+ L + ++ G+ D ++ L+ + ++ + + +I L Sbjct: 468 LAEYEMVDLYENIEKRLARVLASMEIIGFGTDRKILEGLKADLEKQIEAITSEIYDLAGS 527 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + T L LF + +V ++ + +L + I Sbjct: 528 EF-NINSTKQLGEVLFKDLDLPVVKKTKTGF--STDAKVLEKLRDKHPIIEKIERYREIY 584 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL L A+ DGR+R T + AS TGR S QNLP + Sbjct: 585 KLRSTYIEGLENAIDEDGRIRSTFRQNIAS-TGRLSSQEPNLQNLPIKT----------- 632 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R A GK L+ AD + IE R+LA +A + AF G Sbjct: 633 -------------DEGRAIRKAFKAGEGKILIDADYSQIELRILASLADDKNMQDAFNRG 679 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T ++ F+TP+D+V+K QR+ K + + Y G ++ + + Sbjct: 680 IDIHTQTASEVFHTPLDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRPRAKEYIDK 739 Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500 + ++ + D + S + ++ A+ + G Sbjct: 740 YKKSYPQIKEYMDDVVQLARSQGYIETLFKRRRYIPEISSRNFNVRSFGERIALNTPIQG 799 Query: 501 TACELVKKAWRAKHQGVLQLWKD------LTEGFACVVQEGGSISARRVANVPRLVMRRH 554 TA +++K A + + + D + + E AR + + Sbjct: 800 TAADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESSEKDKEKARDILKKCMEGAAKL 859 Query: 555 KRDVHIVLPSSRRLVYSD 572 K D+ + + + S Sbjct: 860 KVDLLVDIGFGESMYESK 877 Score = 44.0 bits (102), Expect = 0.082, Method: Composition-based stats. Identities = 17/122 (13%), Positives = 38/122 (31%), Gaps = 10/122 (8%) Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERT 592 + + + V + + Y+ +S+ R+ Sbjct: 730 RPRAKEYIDKYKKSYPQIKEYMDDVVQLARSQGYIETLFKRR---RYIPEISSRNFNVRS 786 Query: 593 YGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVG 645 +G ++ N +Q + DI+ M I+L +HDEI+ E+ + Sbjct: 787 FGERIALNTPIQGTAADIIKIAMIDTYNKLKEEGLDAKIILQIHDEIIIESSEKDKEKAR 846 Query: 646 TL 647 + Sbjct: 847 DI 848 >gi|15615715|ref|NP_244019.1| DNA polymerase I [Bacillus halodurans C-125] gi|10175775|dbj|BAB06872.1| DNA polymerase I [Bacillus halodurans C-125] Length = 876 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 79/512 (15%), Positives = 173/512 (33%), Gaps = 64/512 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I A A ++ + T+++ L+Q+L+DE ++ + +I Sbjct: 331 DILGLAIAHNNG--CYYIPTDEALRSEALIQWLKDERKEKWLFDAKRAVVAL---GWKNI 385 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 +A PS+ + + ++H K A + KG+ P + Sbjct: 386 ELAGSTFDLQMASYLLDPST--SFHEVSDVTKHHRK-GHVHEDEAVYGKGAKRRIPDEKE 442 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 H+ K VE + ++L ++ E L ++ + G ++D++ + + Sbjct: 443 LGEHLARKADAIFQLKEHVEEKLKENEQLGLFNELEMPLSVILGRMETTGVKVDVEQLEQ 502 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL 265 + E + ++L++ I +L + L LF + ++ ++ T +L Sbjct: 503 MGEDLNARLEELEQTIHELAGVSF-NINSPKQLGEILFEKLQLPVIKKTKTGYSTSADVL 561 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCV 324 D IL+ ++ L + V G++ ++TGR S Sbjct: 562 EKLAGQHEIIDHILHYRQLGKLNSTYIDGLLKVVHKGTGKVHTRFN-QALTQTGRLSSTD 620 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAG 383 QN+P + +R + S ++ AD + Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFVPSEKDWFILAADYSQ 656 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA A ++ ++AF D++ T F+ ++V+ R K + + Y Sbjct: 657 IELRVLAHFAEDEKLMEAFREDMDVHTKTAMDVFHVSQEEVTSNMRRSAKAVNFGIVYGI 716 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G ++ ++++ + + D Sbjct: 717 SDYGLSQNLGITRKEAATFIERYFASYPKVKEYLDHVIDEAREKGYVTTLLKRRRYLPDL 776 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 S + + A+ + GTA +++K+A Sbjct: 777 TSRNFNQRSFAERTAMNTPIQGTAADIIKQAM 808 >gi|88802075|ref|ZP_01117603.1| DNA polymerase I [Polaribacter irgensii 23-P] gi|88782733|gb|EAR13910.1| DNA polymerase I [Polaribacter irgensii 23-P] Length = 980 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 87/507 (17%), Positives = 171/507 (33%), Gaps = 78/507 (15%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-G 104 D+ E + D + E + + HN ++ + +P K + +++A Sbjct: 446 DQAETQRILEDFRPFFESE-IEKIGHNLKYDIKVLSTY---KMPVKGKLFDTMIAHYLIN 501 Query: 105 LPSSLKNACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANHV-QAWQ 157 LA + + ++GK ++ + Y A+ Q Q Sbjct: 502 PDMRHNMDVLAETYLNYQPISIAELIGKKGKNQLSMRSVPLKEQTEYAVEDADITFQLKQ 561 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 LF E +L +D E L + + G ++ D + +L + + Sbjct: 562 LFTG------ELENGNVTKLF--NDIELPLVSVLTAMEIEGINVNTDFLKELSVALTADI 613 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +L++ I + + L + LF + T + ++ LAK+ Sbjct: 614 DRLEKSIYEQAGEEFNIA-SPKQLGIVLFEKMELVKKPKKTKTGQYATGEDILSYLAKEH 672 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + + KL + L V+ GR+ + TGR S QN+P Sbjct: 673 DIIKDIQEYRQYKKLQSTYVDALPNEVNPKTGRIHTQY-MQAVAATGRLSSNNPNLQNIP 731 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390 + VR + L+ AD + IE R++A Sbjct: 732 IRTAR------------------------GREVRKAFVPRDENHVLLAADYSQIELRIIA 767 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 ++ E+ I AF NGEDI+ +T AK FN P+++V+++QR+ K + + Y G + Sbjct: 768 ALSEEENMINAFKNGEDIHASTAAKVFNVPLNEVTRDQRSNAKTVNFGIVYGVSAFGLSN 827 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWM 485 S + + + + + S + + Sbjct: 828 QTDLSRSEAKELIDTYYETYPKLKAYMSAQVDFAREHGYVETVLNRRRYLKDINSRNAVV 887 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA 512 ++ AV + G+A +++K A Sbjct: 888 RNGAERNAVNAPIQGSAADIIKLAMIN 914 >gi|307243137|ref|ZP_07525311.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] gi|306493497|gb|EFM65476.1| DNA-directed DNA polymerase [Peptostreptococcus stomatis DSM 17678] Length = 880 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 84/533 (15%), Positives = 181/533 (33%), Gaps = 85/533 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFK------KTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L DE + + + + + K + + DI ++ S + + + S+ Sbjct: 358 IRTILEDEDIEKIGYEMKADYVALKPYGIDLRNMAFDIAIAEYVIDSKTSTSYDID-SIS 416 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY-DCTRANHVQAWQLFGEYCKRDVEA 169 + + + +G + Y + + ++ + D Sbjct: 417 SKYIYKTIMSKEDLLGKGAKALDYRQVDLEKLDQYVSGMLSTIIGSYPKMKKIIDED--- 473 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +L D E L + + G +D D++ L + + K +++I +L Sbjct: 474 --QLSMLFY---DVEMPLVEVLAEMEYAGICVDRDILSNLAKDFDEIIDKTEKNIHELAG 528 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ ++ ++ + + +L + + + ++ Sbjct: 529 QDF-NVNSPKQLGHILFEKLGLPVIKKTKTGYSTNAE--VLEKLRDKHEIINMITEYRSV 585 Query: 290 LKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 +KL + + V+ DGR+ + + TGR S QN+P + Sbjct: 586 VKLKSTYVDGIEALVNAKDGRIHSSFN-QTITTTGRISSTDPNMQNIPVRT--------- 635 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA + LV AD + +E RVLA ++ + I+AF Sbjct: 636 ---------------DMGRQIRKVFIAGDSMSLVDADYSQVELRVLAHMSQDPHMIEAFN 680 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +GEDI+ T ++ FN ++V+ E R+ K + + Y G A+ + Sbjct: 681 SGEDIHRKTASQVFNVDFNQVTPELRSAAKAVNFGIIYGKSDFGLAQDLNISQKKAKEYI 740 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLW-------MQDQYPEF--------------AVKDKL 498 + + ++ F D +E+ + PE A+ + Sbjct: 741 ESYFNKYETIKAFMDHIVSEAEEKGYSTTIFNRRRYIPEIKSSNFVEKNRGKRAAMNAPI 800 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 G+A +++K A K + +LQ+ +L + R Sbjct: 801 QGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATADELTQVEVLLR 853 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M + G ++L VHDE++ E V L Sbjct: 800 IQGSAADIIKIAMVNVYNRLKEKGLKSRLILQVHDELIVEATADELTQVEVL 851 >gi|302871762|ref|YP_003840398.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] gi|302574621|gb|ADL42412.1| DNA polymerase I [Caldicellulosiruptor obsidiansis OB47] Length = 850 Score = 240 bits (611), Expect = 7e-61, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 138/386 (35%), Gaps = 65/386 (16%) Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 ++ ER L + + G+++D D +L+ + I + L++ I ++ + Sbjct: 447 FVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAGEWF-NINS 505 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L LF + ++ ++ T +L LIL+ + Sbjct: 506 PKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQG 565 Query: 295 LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L +A++ GR+ T G + TGR + QN+P + Sbjct: 566 LLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY------------------- 605 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ T Sbjct: 606 -----DEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQTA 660 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 A+ F ID V+ E R+ K + + Y G A+ K + ++ + Sbjct: 661 AEVFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKV 720 Query: 470 STFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + D + +S + ++ A+ + G+A +++K Sbjct: 721 KEYLDNIVKFARDNGYVLTLFNRRRYVKDIKSANRNARNYAERIAMNSPIQGSAADIMKL 780 Query: 509 AWRAKHQG----------VLQLWKDL 524 A +Q +LQ+ +L Sbjct: 781 AMIKVYQKLKENNLKSKIILQVHDEL 806 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 53/165 (32%), Gaps = 15/165 (9%) Query: 497 KLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVM 551 ++ G + V R++ + G++ D + ++ + R V Sbjct: 662 EVFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 V + L + + Y+ S R Y ++ N +Q + DI+ Sbjct: 722 EYLDNIVKFARDNGYVLTLFNRR---RYVKDIKSANRNARNYAERIAMNSPIQGSAADIM 778 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 M + I+L VHDE++ E P V + Sbjct: 779 KLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKEIVK 823 >gi|197303212|ref|ZP_03168254.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] gi|197297752|gb|EDY32310.1| hypothetical protein RUMLAC_01936 [Ruminococcus lactaris ATCC 29176] Length = 871 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 61/368 (16%), Positives = 125/368 (33%), Gaps = 58/368 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + G ++ + + + + +L+++I + + L Sbjct: 473 EIEMPLVFTLYEMEQAGIHVEGEALKAYGDQLGNRIVELEKEIYDMAGETF-NINSPKQL 531 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 + LF + ++ + + +LA + + + KL + L+ Sbjct: 532 GVILFEKLEMPHAKKTKTG--YSTAADVLDKLAPEYPIVAKILEYRQLTKLKSTYADGLA 589 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ G + TGR S QN+P Sbjct: 590 TFIGPDGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------V 624 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G V AD + IE R+LA +G++ I+A+ DI+ T ++ Sbjct: 625 RMELGRLIRKVFVPKEGCVFVDADYSQIELRILAHCSGDEQLIQAYREARDIHRMTASQV 684 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ P D+V+ QR K + + Y G ++ ++ + + TF Sbjct: 685 FHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAARYIEHYFETYPGIKTF 744 Query: 473 EDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAWR 511 D A++ +MQ + A+ + GTA +++K A Sbjct: 745 LDQCVADAKEKGYAVTLFGRRRPVPELKSSNFMQRSFGERVAMNAPIQGTAADIIKIAMI 804 Query: 512 AKHQGVLQ 519 + + Sbjct: 805 RVSDEMKK 812 >gi|317484592|ref|ZP_07943496.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] gi|316924132|gb|EFV45314.1| DNA polymerase I [Bilophila wadsworthia 3_1_6] Length = 874 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 73/360 (20%), Positives = 132/360 (36%), Gaps = 55/360 (15%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + G ++D + + E + ++ ++ ED+ + G + R L Sbjct: 473 ELPLIPVLADMESAGVKLDAEALADFLEEVQKDLDRITEDVYREAQGPF-NIRSAQQLGD 531 Query: 244 YLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + + + G T + +L + D +L L L + Sbjct: 532 VLFNRLKLPVSGKTRGGQASTSQDVLEKLSGHHPVVDALLEFRKLEKLRSTYLEPLPRLM 591 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DGR+R T A+ TGR S QN+P G Sbjct: 592 GGDGRIRTTFNQL-ATATGRLSSSNPNLQNIP------------------------VRGA 626 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R+C A GKKL+ AD + IE RVLA ++ ++ + AF G DI+ T + F+ Sbjct: 627 LGRRMRACFTAPEGKKLISADYSQIELRVLAHLSRDETLLAAFREGADIHARTASLLFDA 686 Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED- 474 P +++ +QR K + L Y G A+ K S + ++ + ++ F + Sbjct: 687 PPSEITPDQRRNAKTINFGLIYGMGPQKLAQELKIPLSEAKAFMARYFERLQGLKHFYEN 746 Query: 475 --------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 ++ + A+ + G+A +++K A A H Sbjct: 747 VEEMAREQGYVTTLAGRRRPLPDIQAESQQARSLARRQAINTLIQGSAADIIKLAMLAVH 806 >gi|229823043|ref|ZP_04449112.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] gi|229787482|gb|EEP23596.1| hypothetical protein GCWU000282_00338 [Catonella morbi ATCC 51271] Length = 880 Score = 240 bits (611), Expect = 8e-61, Method: Composition-based stats. Identities = 86/519 (16%), Positives = 170/519 (32%), Gaps = 70/519 (13%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNAC 113 ++L D + ++ + + IL + LA L + Sbjct: 361 FRKWLEDGDLPKISADLKRDSILLDHQ---GLTLAGVTFDVGLAAYLVDVEKIKDLTSLA 417 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ + E + KG + P + A H+ + + + Sbjct: 418 TYLDLGIQVQLDEVV------YGKGVKQALPENERLAQHLADKVSLLDQAVAPLTQQLDD 471 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 D E L + + RG +D+ + ++ +L+ ++L+ +I L Sbjct: 472 LGMTQLYQDMEFPLAQVLTDMEKRGVAVDVATLDQMNDLLLARLEELEAEIQTLAGQAF- 530 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF G+ ++ ++ T +L +L + Sbjct: 531 NPNSPKQLGEILFERLGLPVIKKTKTGYSTAADVLEKLKDAHPIVAALLTYRQLAKLQGT 590 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L L + + +DG++ ++TGR S QN+P + Sbjct: 591 YLAGLPKFIQADGKIHTRFV-QTLTQTGRLSSADPNLQNIPIR----------------- 632 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + S G +L AD + IE RVLA I+G+ +AF G+DI+ Sbjct: 633 -------MEEGRKIRQAFVPSEPGWQLFGADYSQIELRVLAHISGDPHMKQAFLEGQDIH 685 Query: 410 VTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 T + F D+ V+ + R K + + Y G ++ + ++ Sbjct: 686 AATARRVFGLAEDEAVNSDMRRQAKAVNFGIVYGISDYGLSQNLDMPRKEAKAFIDRYLA 745 Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503 STF A++ + ++ A+ + GTA Sbjct: 746 EYPGISTFMQEIVAQAKKDGYVSTLWGRRRALPDIYSSNFNLRSFAERTAMNTPIQGTAA 805 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 +++K A A Q + Q +DL V + + A + Sbjct: 806 DIIKVAMVALDQAIRQ--RDLQARLLLQVHDELILEAPQ 842 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + DI+ M + ++L VHDE++ E P + L +M Sbjct: 800 IQGTAADIIKVAMVALDQAIRQRDLQARLLLQVHDELILEAPQEEIAILEELVPEVM 856 >gi|317969181|ref|ZP_07970571.1| DNA polymerase I [Synechococcus sp. CB0205] Length = 985 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 115/677 (16%), Positives = 214/677 (31%), Gaps = 153/677 (22%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW--------DRTEQSAMP-S 55 +D ET S P QA + W + +L + ++ + +P Sbjct: 393 ALDTETTSLNPF----------QAELVGLGVCWGEGLDQLAYIPLGHQAELSDPAQLPLD 442 Query: 56 DLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +L L N+ ++R++ + +P + ++LA L + Sbjct: 443 QVLGALAPWLSSAAHPKTLQNAKYDRLILLRH---GLPLAGVVMDTLLADY--LRDANAK 497 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + + + + P + YC DV T Sbjct: 498 HGLELLAQRNFGFLPTSYSEL----------VPKGANFSAVPM--AQAALYCGMDVHVTY 545 Query: 172 ELFKRLI--------PLS----DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L L PL+ E L + + G RID D + +L + ++ Sbjct: 546 RLTPLLRGQLEALGEPLTALLDQVELPLEPVLALMEATGIRIDTDYLGELSRELKATLER 605 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+ D + + L LF G+D + + + +L + Sbjct: 606 LESDAKEAAGTDFNLA-SPKQLGELLFDTLGLDRKKSRKTKTGWSTDATVLEKLEDAHPV 664 Query: 280 NRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L + KL + L + + GR+ + TGR S QN+P + Sbjct: 665 VPLVLEHRTLSKLKSTYVDALPALMEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIPVR 723 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 S +R + G L+ AD + IE R+LA ++ Sbjct: 724 T------------------------EFSRRIRKAFLPEAGWTLISADYSQIELRILAHLS 759 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 GE+ +KA+ +G+D++ T F+ D+V+ ++R +GK + + Y G + F A Sbjct: 760 GEEVLVKAYQSGDDVHALTARLLFDK--DEVTSDERRLGKTINFGVIYGMGVQRF---AR 814 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + + +YP+ +L Sbjct: 815 ETGVSQAEAKEFLSK----------------YKQRYPKVFAFLELQERLA---------- 848 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 L+ G+ + A + + R + K + I L +RR Sbjct: 849 ----------LSRGYVETILGRRRPFAFDPSGLGRHL---GKDPLEIELEVARR------ 889 Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLT 627 +Q +R +Q S DI+ M + ++L Sbjct: 890 -------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQQRLTESALPARLLLQ 936 Query: 628 VHDEIVSETPDTPYFSV 644 VHDE+V E +V Sbjct: 937 VHDELVLEAAPEALETV 953 >gi|110802827|ref|YP_699271.1| DNA polymerase I [Clostridium perfringens SM101] gi|110683328|gb|ABG86698.1| DNA polymerase I [Clostridium perfringens SM101] Length = 866 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 85/557 (15%), Positives = 176/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ + Y E+ Y + + ++ L ++ +E ++ Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LAQEEENIKALKEFFENEDILK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL--TKME 126 ++ KK LGI+ + C + L N+ K Sbjct: 377 NGYSIKNALTALKK-LGIEFKGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKDG 435 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E + F K + + D E Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ D++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKEEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A + + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 40.5 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N + + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|315225340|ref|ZP_07867154.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] gi|314944613|gb|EFS96648.1| DNA-directed DNA polymerase I [Capnocytophaga ochracea F0287] Length = 932 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 106/609 (17%), Positives = 194/609 (31%), Gaps = 100/609 (16%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDLLQYLRDET 65 D ET S L AE I+ C A V D+ E + + + +E Sbjct: 365 DTETTSVNALE-------AELVGISFCWSAHKGYYVPFPTDKVEATKLLETFRPFFENER 417 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 + V N ++ + + I++ + T + L+ + + Sbjct: 418 IGKVGQNLKYDLKVLQNY-NIEVRGALF-DTMIAHYLLNPDMRHNMDILSETYLNYTPIA 475 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL---FKRLIP--- 179 E LI + R+ EY D + T +L FK +P Sbjct: 476 IES--LIGK----------GKAQRSMRTVPLDQVKEYAVEDADVTWQLKNVFKEEMPKVN 523 Query: 180 ----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +D E L + + G +D+ + + + + + +L+ I + + Sbjct: 524 AEKIYTDLEAPLIKVLAAMEREGVNLDVPFLKEYAKTLDADIAQLEATIAEQAGESFNLA 583 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSGSAIL 290 L LF ID T + S + A IL Sbjct: 584 -SPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFASKHKIVADILEWRQVQKLKST 642 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L V+ GR+ T + TGR S QN+P + Sbjct: 643 YVDALPLEVNKLTGRVHTTY-MQTVAATGRLSSNNPNLQNIPIRT--------------- 686 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 VR IA L+ AD + IE R++A ++ E I +F EDI Sbjct: 687 ---------PRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSEEHNMIDSFLRNEDI 737 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + +T AK F+ P+++V++EQR+ K + + Y G + S + + Sbjct: 738 HRSTAAKVFHVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTNLSRSESKELIDTYYA 797 Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ AV + G+A Sbjct: 798 TYPNLRNYISKQIQFAQEHGYVETVLGRRRYLPDIHSRNQVVRGAAERNAVNAPIQGSAA 857 Query: 504 ELVKKAW-RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 +++K A R +H+ + Q + + V +VP+ + K + + Sbjct: 858 DIIKIAMIRIQHELIRQ---------QLQTRMLLQVHDELVFDVPKTELNIVKPLIKEAM 908 Query: 563 PSSRRLVYS 571 S+ L Sbjct: 909 ESAFNLAVP 917 >gi|238923922|ref|YP_002937438.1| DNA polymerase I [Eubacterium rectale ATCC 33656] gi|238875597|gb|ACR75304.1| DNA polymerase I [Eubacterium rectale ATCC 33656] Length = 903 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 89/487 (18%), Positives = 162/487 (33%), Gaps = 79/487 (16%) Query: 94 ICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 ++A P + A L K GK + K + DC Sbjct: 418 YFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKED-EKKAVDCA 476 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 AW+ ++ E R D E L + + + G R D + + Sbjct: 477 CYEVYTAWKSKPVLLQKLKEMNMLTLYR-----DIELPLVFVLYDMENEGIRADGIKLKE 531 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + +A +L++ I + + L + LF G+ ++ + Sbjct: 532 YGDKLAVSITELEKKIYEAAGEEF-NINSPKQLGVILFEKLGLPNEKKTK--TGYSTAAD 588 Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA + + + KL + LS ++SDG++ TL + TGR S Sbjct: 589 VLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLN-QTITATGRLSST 647 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R + G V +D + Sbjct: 648 EPNLQNIPIR------------------------IELGKLIRKVFLPEEGDLFVDSDYSQ 683 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA ++G++ I+AF NG+DI+ +T + F+TP D+V+ QR K + + Y Sbjct: 684 IELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGI 743 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------------ 481 G + + + F D ++ Sbjct: 744 SAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPEL 803 Query: 482 --HLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGF 528 +MQ Q+ A+ + GTA +++K A H +LQ+ +L Sbjct: 804 NSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIET 863 Query: 529 ACVVQEG 535 ++ Sbjct: 864 KEAEKDK 870 >gi|94495837|ref|ZP_01302416.1| DNA polymerase I [Sphingomonas sp. SKA58] gi|94424529|gb|EAT09551.1| DNA polymerase I [Sphingomonas sp. SKA58] Length = 928 Score = 239 bits (610), Expect = 9e-61, Method: Composition-based stats. Identities = 87/525 (16%), Positives = 176/525 (33%), Gaps = 86/525 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACL 114 L L D+ V+ V N ++ + ++ GI++ G L + Sbjct: 403 LKPLLEDDAVLKVGQNLKYDMTVLRRH-GIEVVPYDDTIVMSFDLEAGKSLSGHGMDEAA 461 Query: 115 ALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEA 169 + ++ GK I+ + Y A+ ++ W+ F E Sbjct: 462 RQHLGHECISFKDVVGTGKNQISFAEVPLPRATEYAAEDADVTLRLWKRFKARIAN--EG 519 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T +++ +R L + + +G ++D + + +L L+ +I ++ Sbjct: 520 TNRVYEL------VDRPLVGVIAKMEHQGIKVDREALSRLSAEFTAGIAALETEIHEIAG 573 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSH--SNITQLAKDLILNRLA 283 + T L LF G + T +IL + +A ++ R Sbjct: 574 QPF-AIGSTQQLGAILFDKMGYKGGKKGKSGAYSTDVTILEQLKAQGAPIAAKVLEWRQL 632 Query: 284 SSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S + + L ++ D GR+ + GA +TGR S QN+P + Sbjct: 633 SKLKST-YTDALQAQINKDSGRVHTSYSLTGA-QTGRLSSTDPNLQNIPIRT-------- 682 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R +A G ++ AD + IE R+ A +A +AF Sbjct: 683 ----------------EVGRQIRHAFVAEPGHVILAADYSQIELRLAAHMADVPALKEAF 726 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 A GEDI+ T + F +V++E R K + A+ Y G A + A Sbjct: 727 AAGEDIHAATAEQLFG----EVNRETRGRAKTINFAILYGISRWGLAGRLEISADEAQDM 782 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDK 497 + ++ + S + + ++ + A+ Sbjct: 783 ISRYYERFPGISIYINETIEKARERGYTETLFGRKTWFPRIKASIQHERQGAERAAINAP 842 Query: 498 LIGTACELVKKAWRAKHQGV-------LQLWKDLTEGFACVVQEG 535 + GT+ +++K+A + +++ + + V EG Sbjct: 843 IQGTSADIIKRAMVRMGPALEAAGLSGVRMLLQVHDELVFEVPEG 887 >gi|328950652|ref|YP_004367987.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] gi|328450976|gb|AEB11877.1| DNA polymerase I [Marinithermus hydrothermalis DSM 14884] Length = 834 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 75/434 (17%), Positives = 140/434 (32%), Gaps = 69/434 (15%) Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + W++ GE L+ + ER L + + G R+D+ + L + Sbjct: 414 ELWRILGERLAG----EEALWWLYR---EVERPLAGVLAEMEHAGVRVDVAYLEALSAEL 466 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 +E ++ ++ +L + L + L+ G+ ++ T + S + + L Sbjct: 467 GREIAAIEAEVHRLAGRAF-NLNSRDQLEVILYDELGLTPTRRTQKTGRRSTSAAALEAL 525 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L V GR+ G + TGR S Sbjct: 526 VGAHPIVERILAYRELSKLKGTYLDPLPRLVHPATGRIHTRYHQTG-TATGRLSSSDPNL 584 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R +A G LV AD + IE R Sbjct: 585 QNIPVRT------------------------EVGRRIRRAFVAEPGYVLVAADYSQIELR 620 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ + F DI+ T + F P + V +R K + + Y Sbjct: 621 VLAHLSGDENLKRVFQERRDIHTQTASWMFGVPPEAVDPFRRRAAKTVNFGVLYGMSPHR 680 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482 + + +Q++ ++ + + S + Sbjct: 681 LSRELGIEYAEAERFIQRYFESYPRVQAYIERTLEQAREKGYVETLFGRRRYIPDIRSRN 740 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL-----TEGFACVVQEGGS 537 +++ A + GTA +L+K A + L L E QE Sbjct: 741 RNVREAAERMAFNMPVQGTAADLMKLAMVKLAPEIRSLGARLILQVHDELVLEAPQERAE 800 Query: 538 ISARRVANVPRLVM 551 AR V V Sbjct: 801 AVARVVREVMEGAW 814 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 7/70 (10%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 VQ + D++ M G ++L VHDE+V E P +V + +M + Sbjct: 756 VQGTAADLMKLAMVKLAPEIRSLGARLILQVHDELVLEAPQERAEAVARVVREVMEG--A 813 Query: 657 WAKGLPLKAE 666 WA +PL+ E Sbjct: 814 WALDVPLEVE 823 >gi|169343823|ref|ZP_02864822.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] gi|169298384|gb|EDS80474.1| DNA polymerase I [Clostridium perfringens C str. JGS1495] Length = 866 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 85/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ + Y E+ Y + + ++ ++ +E ++ Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEAILK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 ++ KK LGID + C + L N+ ++EG Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435 Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + F K + + D E Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ D++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A + + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N + + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|213963385|ref|ZP_03391641.1| DNA polymerase type I [Capnocytophaga sputigena Capno] gi|213954053|gb|EEB65379.1| DNA polymerase type I [Capnocytophaga sputigena Capno] Length = 928 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 88/505 (17%), Positives = 165/505 (32%), Gaps = 82/505 (16%) Query: 52 AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 + + +E + V N ++ + + G+++ + T + Sbjct: 400 KLIEQFRPFFENEQIAKVGQNLKYDLKVLQNY-GVEVQGALF-DTMIAHYLLNPDMRHNM 457 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L+ + + E LI + R+ EY D + T Sbjct: 458 DILSETYLNYTPIAIES--LIGK----------GKAQRSMRTVPIDEVKEYAVEDADVTW 505 Query: 172 EL---FKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +L F+ +P +D E L + + G +D+D + + + + + +L+ Sbjct: 506 QLKNVFQSQMPQVNAQKIYTDLEAPLIKVLAAMEREGVNLDVDFLKEYSKTLDADIAQLE 565 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL---- 277 I + + L LF ID T + S + A Sbjct: 566 TAIAQQAGETFNLA-SPKQLGDILFEKLKIDSKPKKTKTGQYATSEEVLAPFAAKHKIVA 624 Query: 278 -ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL ++ L V+ GR+ T + TGR S QN+P + Sbjct: 625 DILEWRQVQKLKSTYVDALPLEVNKSTGRVHTTY-MQTVAATGRLSSNNPNLQNIPIRT- 682 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 VR IA L+ AD + IE R++A ++ Sbjct: 683 -----------------------PRGQQVRKAFIARNPDYVLLSADYSQIELRIIAALSE 719 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 E I++F +GEDI+ T AK FN P+++V++EQR+ K + + Y G + Sbjct: 720 EHNMIESFLHGEDIHRATAAKVFNVPLEEVTREQRSHAKTVNFGIIYGVSAFGLSAQTDL 779 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQY 489 S + + + + + SH+ ++ Sbjct: 780 SRSESKELIDTYYATYPNLRNYINRQIEFAREHGYVETILGRRRYLPDIHSHNQVVRGGA 839 Query: 490 PEFAVKDKLIGTACELVKKAWRAKH 514 AV + G+A +++K A H Sbjct: 840 ERNAVNAPIQGSAADIIKIAMIRIH 864 >gi|46198998|ref|YP_004665.1| DNA polymerase I [Thermus thermophilus HB27] gi|46196622|gb|AAS81038.1| DNA polymerase I [Thermus thermophilus HB27] Length = 834 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 78/458 (17%), Positives = 152/458 (33%), Gaps = 67/458 (14%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 +VLA GL + + + L + + + + R+ + + + + Sbjct: 356 KDLAVLALREGLDLAPGDDPMLLAYLLDPSNTTP-EGVARRYGGEWTEDAAHRALLSERL 414 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 L + K L + E+ L + + G R+D+ + L + Sbjct: 415 HRNLLKRLEGEE---------KLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLEL 465 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 A+E ++L+E++ +L + L LF + + ++ T K S + + L Sbjct: 466 AEEIRRLEEEVFRLAGHPF-NLNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEAL 524 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + + + KL + L V GRL A+ TGR S Sbjct: 525 REAHPIVEKILQHRELTKLKNTYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNL 583 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R +A G LV D + IE R Sbjct: 584 QNIPVRT------------------------PLGQRIRRAFVAEAGWALVALDYSQIELR 619 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-- 445 VLA ++G++ I+ F G+DI+ T + F P + V R K + + Y A Sbjct: 620 VLAHLSGDENLIRVFQEGKDIHTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHR 679 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------- 484 + ++++ Q+ + + E Sbjct: 680 LSQELAIPYEEAVAFIERYFQSFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARV 739 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 +++ A + GTA +L+K A + ++ Sbjct: 740 KSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLREM 777 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%) Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555 + G E V R + + + QE VA + R + + Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706 Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + L R+ Y + G Y+ +++ R ++ N+ VQ + D++ Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766 Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 M + G ++L VHDE++ E P V L Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAK 806 >gi|218132195|ref|ZP_03460999.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] gi|217992916|gb|EEC58916.1| hypothetical protein BACPEC_00052 [Bacteroides pectinophilus ATCC 43243] Length = 879 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 68/383 (17%), Positives = 133/383 (34%), Gaps = 68/383 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G +D + + + +A +L+ I +L + L Sbjct: 481 DIEMPLVFVLYDMECEGIMVDSKGLKEYGDKLATRITELENTIYELAGTKF-NINSPKQL 539 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 LF + ++ + + +LA + + + KL + L+ Sbjct: 540 GTVLFEDMKLPSGKKTKSG--YSTAADVLEKLAPEYPVVAKILEYRQLTKLKSTYADGLA 597 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ G + TGR S QN+P Sbjct: 598 VYILEDGRIHGHFN-QTITATGRISSTEPNLQNIP------------------------V 632 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G + AD + IE R+LA ++ +D I A+ +DI+ T ++ Sbjct: 633 RMEIGRQIRKVFVPKPGCVFLDADYSQIELRILAHMSQDDKLIAAYNTAQDIHAITASQV 692 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ P+D+V++ QR+ K + + Y G ++ ++Q+ F Sbjct: 693 FHVPLDEVTRTQRSNAKAVNFGIIYGISSFGLSQDLSISRKEASEYIEQYFATYPHIKEF 752 Query: 473 EDWEQAESH--------------------HLWMQDQY-PEFAVKDKLIGTACELVKKAWR 511 D A + +MQ Q+ A+ + G+A +++K A Sbjct: 753 IDGLVASAKKNGYSTTMFGRRRPVPELNSSNFMQRQFGERIAMNSPIQGSAADIIKIAMI 812 Query: 512 A----------KHQGVLQLWKDL 524 K + +LQ+ +L Sbjct: 813 NVSRALKDNNLKSKMILQVHDEL 835 >gi|302670972|ref|YP_003830932.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] gi|302395445|gb|ADL34350.1| DNA polymerase I PolA [Butyrivibrio proteoclasticus B316] Length = 740 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 71/465 (15%), Positives = 146/465 (31%), Gaps = 77/465 (16%) Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L S GK I S+ C ++ CK+ E Sbjct: 283 EYLGLSLEKKIDLFGKKSIREADDKSVVQYACKCAFV----CFKAEPLICKK-----LEK 333 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L + E L + ++ G D + + + +L++ I + Sbjct: 334 LQMLDLFYNIEMPLSYVLYSMEKEGIIARRDELKAYGDKLQIRISELEKSIYEAAGVEF- 392 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + L LF G+ ++ + + +LA D + + KL Sbjct: 393 NINSPKQLGEILFERLGLPAEKKTKSG--YSTAADVLEKLAPDYPIVADILEYRGLAKLK 450 Query: 293 ----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L+ + DGR+ + + TGR S QN+P + Sbjct: 451 STYADGLAAYIEEDGRIHTSFN-QTITATGRISSTEPNLQNIPMRT-------------- 495 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + AD + IE R+LA ++ + I A+ G+DI Sbjct: 496 ----------ELGRLIRKVFVPKEDHVFADADYSQIELRILAHMSEDQELIAAYHEGKDI 545 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T +K F+ P ++V+ QR K + + Y G ++ + ++ + Sbjct: 546 HGITASKVFHVPFEEVTPLQRRNAKAVNFGIVYGISSFGLSQDLSISVKEAKEYMDKYFE 605 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 +++ + ++ + M+ A+ + GTA Sbjct: 606 TYPGVKAYQERVIADAKEKGYSLTMFGRRRPIPELKASNYMMRQFGERVAMNAPIQGTAA 665 Query: 504 ELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSI 538 +++K A + +LQ+ +L +E + Sbjct: 666 DIMKIAMINVYFRLKKEKLVSKLILQIHDELVIETLKDEEEKVTA 710 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 46/137 (33%), Gaps = 21/137 (15%) Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYS---DVKGDCSYLNTATSQLMRERTYGGKLT 598 + V +R + L + N Q +G ++ Sbjct: 602 KYFETYPGVKAYQERVIADAKEKGYSLTMFGRRRPIPELKASNYMMRQ------FGERVA 655 Query: 599 ENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 N +Q + DI+ M N K ++L +HDE+V ET + +L+ Sbjct: 656 MNAPIQGTAADIMKIAMINVYFRLKKEKLVSKLILQIHDELVIETLKDEE---EKVTALL 712 Query: 652 TKNPSWAKGL--PLKAE 666 T+ A L PL AE Sbjct: 713 TQEMERAADLSVPLLAE 729 >gi|18310976|ref|NP_562910.1| DNA polymerase I [Clostridium perfringens str. 13] gi|18145658|dbj|BAB81700.1| DNA polymerase I [Clostridium perfringens str. 13] Length = 866 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 85/557 (15%), Positives = 178/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ + Y E+ Y + + ++ ++ +E ++ Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEAILK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 ++ KK LGID + C + L N+ ++EG Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435 Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + F K + + D E Sbjct: 436 EEDLVGITFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ D++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKAVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A + + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 40.5 bits (93), Expect = 0.93, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N + + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|16331949|ref|NP_442677.1| DNA polymerase I [Synechocystis sp. PCC 6803] gi|6225285|sp|Q55971|DPO1_SYNY3 RecName: Full=DNA polymerase I; Short=POL I gi|1006595|dbj|BAA10748.1| DNA polymerase I [Synechocystis sp. PCC 6803] Length = 986 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 129/674 (19%), Positives = 217/674 (32%), Gaps = 146/674 (21%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEP--VKLWDRT--EQSA----MPSDLL 58 D ET S PL A + AW EP V + + DLL Sbjct: 401 DTETDSLDPLV----------ANLVGIGCAWGQEPNQVAYIPLKHHQGEQLSLGIIKDLL 450 Query: 59 -QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + L + V N+ F+R + I + ++LA P N Sbjct: 451 GEILGNAIYPKVLQNAKFDRRVLAHH---GIELGGVVLDTMLASYVLQPE------ETHN 501 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 ++ + G ++ G D T A+ + G+YC D AT L +L Sbjct: 502 LTDLCRRYNLGLVALSYKDLGLKK----DQTIADLPL--ETAGQYCGLDCYATYLLASKL 555 Query: 178 ------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 P L + E+ L + + DRG RID D + L + +A+ ++ + Sbjct: 556 QKELDQYPELKEILKEIEQPLEKILAAMEDRGIRIDCDYLQTLSQQLAENLLTIETAAYE 615 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 S L LF G+D + H+ + +L D + Sbjct: 616 AAGESFNLS-SPKQLGTILFDKLGLDRKKSRKTKTGYSTDHATLEKLQGDHPIIDAILEH 674 Query: 287 SAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L E V+ R+ + TGR S QN+P + Sbjct: 675 RTLAKLKSTYVDALPELVNGQTQRIHTDFN-QAVTSTGRLSSSNPNLQNIPIRS------ 727 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + LV AD + IE R+LA ++ E ++ Sbjct: 728 ------------------DFSRQIRRAFLPQKDWLLVSADYSQIELRILAHLSQEPVLLQ 769 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ + +D++ T F + ++ +R +GK + + Y GA+ F A G+ Sbjct: 770 AYGDRQDVHGVTAKLLFGK--EDITPAERNLGKTINFGVIYGMGAQRF---ARETGISAV 824 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-VKDKLIGTACELVKKAWRAKHQGVLQ 519 + + + + +A V D L E + K + G + Sbjct: 825 EGREFID-------------------RYHRTYAQVFDYLETMKLEAIAKGYVTTIVGRRR 865 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 + +TE + + L DVK Sbjct: 866 YFNFVTEALR-----------------------------QLRGKTVTELDLVDVK----- 891 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYDIVL--TVHDEIVSE 635 +N +QL+R +Q S DI+ M K Y + VHDE++ E Sbjct: 892 MNYNDAQLLRSAANAP------IQGSSADIIKIAMVKLAKLLESYQTRMLLQVHDELIFE 945 Query: 636 TPDTPYFSVGTLCS 649 P + + L Sbjct: 946 MPPEEWEELAPLIQ 959 >gi|33240684|ref|NP_875626.1| DNA polymerase I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238212|gb|AAQ00279.1| DNA polymerase I 3'-5' exonuclease and polymerase domains [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 985 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 122/692 (17%), Positives = 212/692 (30%), Gaps = 170/692 (24%) Query: 5 FIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRT---EQSAMPSDLLQ 59 ID ET S P VG+ + + + + + + Q Sbjct: 388 AIDTETTSLNPFKAELVGLG----------FCWGENLDDIAYIPLGHNSQGELKDQSIRQ 437 Query: 60 YLRDETVM-------------CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 L + V+ V N+ ++R++F L IP + + ++LA Sbjct: 438 QLPIQNVIQSLTPWLSSSYHPKVLQNAKYDRLIF---LHNGIPLEGVVMDTLLADYLSNS 494 Query: 107 S---SLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + SL F+ K GK F ID+ Y Sbjct: 495 TNKHSLDEIAKREYGFTPINFKELVGKGET--FKDVDIDTA----------------SIY 536 Query: 163 CKRDVEATRELFKRLIP------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 C DV TR+L R+ L E+ L + + RG ID+ + +L Sbjct: 537 CGMDVYLTRKLSFRIRSQLQTKGSELIQLLEKVEQPLEPILAEMEARGICIDIPYLKELS 596 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + + Q K L+E K + L LF +D + + + Sbjct: 597 KELNQTLKGLEEQAYKSAGFEF-NLNSPKQLGEILFDKLALDKKKSRKTKTGWSTDANVL 655 Query: 271 TQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCV 324 +L D L L + KL + L + V + GR+ + TGR S Sbjct: 656 ERLEADHPLVPLLVEHRTLSKLVSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSN 714 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P + S +R + KL+ AD + I Sbjct: 715 PNLQNIPIRT------------------------EFSRRIRKAFLPQENWKLISADYSQI 750 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA ++GE+ +A+ NG+D++ T + ++ +R +GK + + Y G Sbjct: 751 ELRILAHLSGEEILQEAYKNGDDVHTLTAKIL--LEKESINSNERRLGKTINFGVIYGMG 808 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 A+ FA L + + Sbjct: 809 AQ--------------------------------------------RFARSTGLNQSEAK 824 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVL 562 ++ ++ V + + RR N + + R ++I L Sbjct: 825 DFLNRFKERYPKVFSFLELQERLALSKGYVQTLLGRRRYFNFDKNGLGRLLGSDPMNIDL 884 Query: 563 PSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN-- 620 +RR +Q +R +Q S DI+ M Sbjct: 885 KRARRA-------------GMEAQQLRAAANAP------IQGSSADIIKIAMVQLATKLK 925 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +++L VHDE+V E + V + Sbjct: 926 VSGVAANLLLQVHDELVLEVEPSVIEEVKNIV 957 >gi|237716864|ref|ZP_04547345.1| DNA polymerase I [Bacteroides sp. D1] gi|229442847|gb|EEO48638.1| DNA polymerase I [Bacteroides sp. D1] Length = 504 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 65/415 (15%), Positives = 126/415 (30%), Gaps = 77/415 (18%) Query: 162 YCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 Y D + T +L L D E L + I G +D + + + Sbjct: 73 YACEDADITLKLKNVLEKELKENDAERLFYDIEMPLVPVLVNIERNGVLLDTEALQQSSA 132 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + ++++++I +L + + LF I T + + S + Sbjct: 133 HFTAQMEQIEKEIYELAGETFNIA-SPKQVGEVLFDKLKIVEKAKKTKTGQYVTSEEVLE 191 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 L + + KL + L ++ GR+ + + TGR S Sbjct: 192 SLRHKHPVVEKILEHRGLKKLLGTYIDALPLLINPRTGRVHTSFN-QTVTATGRLSSSNP 250 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + +R I G AD + IE Sbjct: 251 NLQNIPIR------------------------DENGKEIRKAFIPDEGCLFFSADYSQIE 286 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 R++A ++ + I AF + DI+ T AK + + V + R K + Y Sbjct: 287 LRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKIDLKDVDSDMRRKAKTANFGIIYGISV 346 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480 G A+ + + + + D S Sbjct: 347 FGLAERMNVDRKEAKELIDGYFETYPGVKAYMDKSIQVAQEKGYVETIFHRKRFLPDINS 406 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 + ++ A+ + G+A +++K A +Q +LQ+ +L Sbjct: 407 RNAVVRGYAERNAINAPIQGSAADIIKVAMARIYQRFQAEGIQAKMILQVHDELN 461 >gi|168215620|ref|ZP_02641245.1| DNA polymerase I [Clostridium perfringens NCTC 8239] gi|182382103|gb|EDT79582.1| DNA polymerase I [Clostridium perfringens NCTC 8239] Length = 866 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 84/557 (15%), Positives = 176/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ Y + +K + ++ ++ +E ++ Sbjct: 329 EKYSTIEIDKI------------FINYDEKNYLIKFKELVKEEDNIKAFKEFFENEDILK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 ++ KK LGID + C + L N+ ++EG Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435 Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + F K + + D E Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ D++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRREAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A + + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 40.5 bits (93), Expect = 0.96, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N + + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|55981023|ref|YP_144320.1| DNA polymerase I [Thermus thermophilus HB8] gi|62298349|sp|P52028|DPO1T_THET8 RecName: Full=DNA polymerase I, thermostable; AltName: Full=Tth polymerase 1 gi|55772436|dbj|BAD70877.1| DNA polymerase I [Thermus thermophilus HB8] Length = 834 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 70/377 (18%), Positives = 130/377 (34%), Gaps = 57/377 (15%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K L + E+ L + + G R+D+ + L +A+E ++L+E++ +L + Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRLDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 L LF + + ++ T K S + + L + + + KL Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545 Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L V GRL A+ TGR S QN+P + Sbjct: 546 TYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A G LV D + IE RVLA ++G++ I+ F G+DI Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464 + T + F P + V R K + + Y A + ++++ Q Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQ 700 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + + + E +++ A + GTA Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760 Query: 504 ELVKKAWRAKHQGVLQL 520 +L+K A + ++ Sbjct: 761 DLMKLAMVKLFPRLREM 777 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%) Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555 + G E V R + + + QE VA + R + + Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706 Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + L R+ Y + G Y+ +++ R ++ N+ VQ + D++ Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766 Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 M + G ++L VHDE++ E P V L Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAK 806 >gi|168212970|ref|ZP_02638595.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] gi|170715581|gb|EDT27763.1| DNA polymerase I [Clostridium perfringens CPE str. F4969] Length = 866 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 85/557 (15%), Positives = 175/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ + Y E+ Y + + ++ ++ +E ++ Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKSFKEFFENEDILK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL--TKME 126 ++ KK LGID + C + L N+ K Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKDG 435 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E + F K + + D E Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ D++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A + + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 40.5 bits (93), Expect = 0.91, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N + + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|15618522|ref|NP_224808.1| DNA polymerase I [Chlamydophila pneumoniae CWL029] gi|15836144|ref|NP_300668.1| DNA polymerase I [Chlamydophila pneumoniae J138] gi|16752428|ref|NP_444687.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|4376908|gb|AAD18751.1| DNA Polymerase I [Chlamydophila pneumoniae CWL029] gi|7189071|gb|AAF38018.1| DNA polymerase I [Chlamydophila pneumoniae AR39] gi|8978984|dbj|BAA98819.1| DNA polymerase I [Chlamydophila pneumoniae J138] Length = 870 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 102/509 (20%), Positives = 179/509 (35%), Gaps = 82/509 (16%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPS 107 E + + L + E + +N + GI I + + + G Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISYDLALAEHLTNGGGKI 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCK-- 164 S ++ + F+E RF K +S P Q + F Y Sbjct: 407 SFQSLLVNHGFTETAH----------RFAKEWGNSGLPIGRLPEQPEQYFGEFVAYLPII 456 Query: 165 RDV---EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +D E R+ + LSD E L + ++ G +D++ + L+ L E L Sbjct: 457 KDAILEEINRKNLNHI--LSDIEMPLEKVLFSMERAGVPLDVEELAILEALFETELAVLT 514 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-----HSNITQLAKD 276 E+I L+ + + L L+ G+ +D ++ T +L H I +L Sbjct: 515 EEIYDLSGRPF-NIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLLAF 573 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + +L S+ + L + V S R+ + GA TGR + QN+P + Sbjct: 574 RTIEKLLSTY-----VKALPKQVDSHTQRIHPSFDQTGAV-TGRLACRDPNLQNIPIRSE 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAG 394 +R ++ + AD + IE R LA ++ Sbjct: 628 R------------------------GILLRKAFRLSEKNSYFLSADYSQIELRFLAHLSQ 663 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 + AF +GEDI+ T ++ F+ P+++VSKEQR K + + Y G AKV K Sbjct: 664 DKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVLKI 723 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAES--------------------HHLWMQDQYP 490 +Q + + F + ++ + Sbjct: 724 SIGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEFPGSRAASG 783 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 FAV ++ G+A EL+K A Q + Q Sbjct: 784 RFAVNTRIQGSAAELIKLAMLDISQAIKQ 812 >gi|282896895|ref|ZP_06304901.1| DNA polymerase A [Raphidiopsis brookii D9] gi|281198304|gb|EFA73194.1| DNA polymerase A [Raphidiopsis brookii D9] Length = 988 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 115/655 (17%), Positives = 217/655 (33%), Gaps = 136/655 (20%) Query: 33 CAYAWDDEPVKLWDRTE------QSAMP-----SDLLQYLRDETVMCVAHNSLFERILFK 81 C + + V + +P S L + L N+ F+R++FK Sbjct: 410 CCWGTGENDVAYIPLGHNITSNLEKNLPLNTVLSTLEKILVSGDYPKTFQNAKFDRLIFK 469 Query: 82 KTLGIDIPSKRWICTSVLART-NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 GI + + +LA + LAL + + E ++ + K Sbjct: 470 -YQGITL--DGVVFDPMLASYVLNPDRTHNLTDLALRYLGLQ--LTEYDDIVQKSGKKER 524 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP-----------LSDGERDLWL 189 D + H A YC + V AT +L +L L D E+ L + Sbjct: 525 QKTIADI--SIHTVA-----NYCGKQVYATWQLVGKLREELNEIPALFKLLVDVEQPLEV 577 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + RG I+ + +L + I + L+ K+ + L LF Sbjct: 578 VLAEMEHRGVIINSAYLQQLSQHIESDLATLEIKATKIAGEKF-NLGSPKQLSYILFEKL 636 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVS-S 301 G+ + + + + +L + D I+ + ++ L E V+ Sbjct: 637 GLSTKYSRKISTGYSTDAATLEKLQEVDQTGFVDAIIEYRTLAKLKSTYVDALPELVNHK 696 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 R+ A+ TGR S QN+P + S Sbjct: 697 TQRIHTNFN-QTATATGRLSSSNPNLQNIPIRT------------------------AFS 731 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + +G +V AD + IE R+LA ++ E I+A++N +DI+ T F+ Sbjct: 732 RQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPMLIQAYSNNQDIHTLTAKLLFDK-- 789 Query: 422 DKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 + V+ E+R K + + Y G + G+D ++ ++ Sbjct: 790 EDVTSEERRFAKTINFGVIYGMGV---LKFSRSTGVDKNIANEFIQ-------------- 832 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +F + L+ T E +KK + + E R Sbjct: 833 ---------KFNQRYPLVFTYLETIKK-----------------QAISQGYVETILGRRR 866 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 + + + +D+ + + +K L + L+R Sbjct: 867 YFDFTNKTLQQLKGKDLQ-------EIELNKLKN----LGPYDAGLLRSAANAP------ 909 Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 +Q S DI+ M + ++L VHDE+V E P + + + + S+M Sbjct: 910 IQGSSADIIKIAMVRLHEVLRRYQAKLLLQVHDELVFEVPPSEWDELQLQIKSVM 964 >gi|149919860|ref|ZP_01908336.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149819307|gb|EDM78740.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 933 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 86/527 (16%), Positives = 179/527 (33%), Gaps = 82/527 (15%) Query: 28 AVITLCAY-AWDDEPVKLWDRTEQSAMPSDLLQ----YLRDETVMCVAHNSLFERILFKK 82 + A+ + D V+ W PS++L L D + H ++++ + Sbjct: 381 PIYLPMAHRSLSDGAVQQW-------KPSEVLAKVGPLLSDAKLPKYTHALKDQQVVLSR 433 Query: 83 TLGIDIPSKRWICTSVLARTNGLPS-------SLKNACLALNFSEHLTKMEEGKALIARF 135 +++ + + ++LA P+ L + + + +GK + Sbjct: 434 A-DLNVEVRNVVGDTLLASYTLDPARSDHNLEGLAKDIGGRLVGDRESIVGKGKKRVGFD 492 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTI 194 + P+ RA + E T++L+ ++ E L + + Sbjct: 493 QVAVAVAGPWAGERAGLAATLGPHMVAAAKAAGEQTQKLY------AEVELPLARVLARL 546 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 RG +D + + + + + L + + + L LF G+ Sbjct: 547 ERRGVLLDEAELQRQNDELGGQIDALKSTLQEEAGYAVD-PNSPKQLGKLLFEERGLPAK 605 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310 ++ T L ++ +IL+ + + L+TL + V+ GRL + Sbjct: 606 KKTKTGYSTDAQTLEELSLLDPIVKVILDYRSLAKLKNTYLDTLPKLVNPNTGRLHTHFR 665 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 + TGR S QN+P + +R +A Sbjct: 666 -QAVAATGRLSSREPNLQNIPIRT------------------------EQGRRIRRGFVA 700 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G +LV D + IE RVLA ++ + +KAF +G D++ T A+ F P +V+ EQR Sbjct: 701 PEGMQLVTLDYSQIELRVLAHLSKDPNLVKAFTDGADVHRRTAAEVFEVPEAEVTSEQRR 760 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-- 484 + K + + Y G A+ G ++ + + + S++ + + Sbjct: 761 VAKAVNFGVIYGQSAFGLARQLGIPQGRAGKYIKAYFKKIPGVSSYMNALIDTAKDTGFA 820 Query: 485 -------------------MQDQYPEFAVKDKLIGTACELVKKAWRA 512 + A + G+A +++K A Sbjct: 821 ETIFGRRRRIPELRRRGAVARSYGERIARNTPIQGSAADILKIAMVE 867 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNAT-----KNGYDIVLTVHDEIVSETPDTPYFSV 644 R+YG ++ N +Q + DIL M K ++LTVHDE++ E + Sbjct: 841 RSYGERIARNTPIQGSAADILKIAMVEVERLLDDKPWARMLLTVHDELIFECETDKVQEL 900 Query: 645 GTLCS 649 L Sbjct: 901 IGLVK 905 >gi|297621859|ref|YP_003709996.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] gi|297377160|gb|ADI38990.1| DNA polymerase I [Waddlia chondrophila WSU 86-1044] Length = 883 Score = 239 bits (609), Expect = 1e-60, Method: Composition-based stats. Identities = 96/511 (18%), Positives = 170/511 (33%), Gaps = 83/511 (16%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 L + + AH+ ++ + K I ++LA P + Sbjct: 356 EKALKKLAPLFENSRIGFYAHHLKYDLHILKNY---GISLANISFDTILASYILTPHLRQ 412 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 ++ AL LI + K I + YC DV+ T Sbjct: 413 HSLDALTLEHFGKTKIPTSDLIGK-GKNQITMLEVPIEKV---------CAYCCEDVDYT 462 Query: 171 RELFK---------RLIPLSDGERDLW-LLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 L + +L PL + + G +D ++ L++ + + ++L Sbjct: 463 YRLKQIFASELKKRKLEPLLFDLELPLLKVLSKMEREGIFLDAPILKTLEKAVNTDLQRL 522 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + +I + D + + L LF I + S + L + + Sbjct: 523 ENEIHAIADEPF-NLKSPKQLSGILFEKMKIPPPKKT--ATGYSTSAEVLETLQNEYAIA 579 Query: 281 RLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + ++ KL TL + ++ GR+ T A+ TGR S Q +P Sbjct: 580 KKMLEFRSLEKLRSSYIETLPKEINPKTGRIHPTFNQSVAA-TGRLSCQDPNLQQIP--- 635 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIA 393 I PLG VR G + AD + IE R+LA + Sbjct: 636 ------------------IRTPLG---REVRKAFRPEKQGWSYLSADYSQIELRLLAHFS 674 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 + I AF N EDI+ T A N P+++V+KEQR K + + Y G +K Sbjct: 675 EDPTLISAFENNEDIHTHTAATVLNIPLEQVTKEQRRQAKAVNFGILYGQQAWGLSKELG 734 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 ++ + Q + F + + +S + ++ Sbjct: 735 ISLEEASAFIKTYFQRYQRVKDFVESCKEKTRKTGRAMTIIGRERPIPEIDSKNPQIRGA 794 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 AV L GTA +L+KKA + +++ Sbjct: 795 AERLAVNTPLQGTAADLIKKAMIVIDEKLMR 825 >gi|168179504|ref|ZP_02614168.1| DNA polymerase I [Clostridium botulinum NCTC 2916] gi|182669730|gb|EDT81706.1| DNA polymerase I [Clostridium botulinum NCTC 2916] Length = 875 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 85/583 (14%), Positives = 184/583 (31%), Gaps = 105/583 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58 L + Y E I L + YA + V D + Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCK 375 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + + + +++ R + +K + I LA P + +L Sbjct: 376 EMFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLAS 432 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + F K + +++ E K +++ + L Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E+ L + G+++D D++L+L++ E + +I +++ + Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKRFKGEIESTQLEIYSMSEEEF-NINSP 531 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L D I + + L Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A+ DG++ + TGR S QN+P + Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T + Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 + F PI++V+ R+ K + + Y G ++ + + + + Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ +S + ++ A+ + G+A +++K A Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 H+ +LQ+ +L E ++ Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849 >gi|153938977|ref|YP_001392289.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|152934873|gb|ABS40371.1| DNA polymerase I [Clostridium botulinum F str. Langeland] gi|295320282|gb|ADG00660.1| DNA polymerase I [Clostridium botulinum F str. 230613] Length = 875 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 85/583 (14%), Positives = 184/583 (31%), Gaps = 105/583 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58 L + Y E I L + YA + V D + Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCR 375 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + + + +++ R + +K + I LA P + +L Sbjct: 376 EMFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLINPVRKEYEISSLAS 432 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + F K + +++ E K +++ + L Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E+ L + G+++D D++L+L++ E + +I +++ + Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L D I + + L Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A+ DG++ + TGR S QN+P + Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T + Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 + F PI++V+ R+ K + + Y G ++ + + + + Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ +S + ++ A+ + G+A +++K A Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 H+ +LQ+ +L E ++ Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849 >gi|167754596|ref|ZP_02426723.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|237733768|ref|ZP_04564249.1| DNA polymerase I [Mollicutes bacterium D7] gi|167705428|gb|EDS20007.1| hypothetical protein CLORAM_00098 [Clostridium ramosum DSM 1402] gi|229383106|gb|EEO33197.1| DNA polymerase I [Coprobacillus sp. D7] Length = 870 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 93/556 (16%), Positives = 184/556 (33%), Gaps = 79/556 (14%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + +A ++ + TE + ++ ++ D+ + ++ + Sbjct: 329 MIVGFAVYNDSEAYFIGTEDALNCTNFKNFISDKKIEKYGYDIKK---SINAAKWHGLEI 385 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLT--KMEEGKALIARFCKGSIDSPPYDCT 148 + ++ LA PS + E+ EE + KG+ P Sbjct: 386 ENYVFDLQLASYILNPSLKDEIRSVCEYYEYYDVFYDEEV------YGKGAKKKVPETSR 439 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVL 207 A H+ Q Y +D + + L D E + + + +G ++D ++ Sbjct: 440 VAEHLIK-QAKAIYILKDQAIEKLNNENQFELYKDVEMPVAKILARMEFQGAKVDSVVLK 498 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +L+E +E L+++I L + + L LF G+ ++ T I Sbjct: 499 QLEEQFGREINILEKEIHTLANREFNIA-SPKQLGEVLFEDLGLPNGKKTKTGYSTSVDI 557 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L+ D +L S + L + V DG++ ++TGR S Sbjct: 558 LNKLKDIHPIIDKVLKYRTLSKLYSTYIIGLQDQVFIDGKIHTIYN-QALTQTGRLSSTD 616 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P +R + LV D + I Sbjct: 617 PNLQNIP------------------------VKTPEGKLIRKAFVP-EYDYLVSFDYSQI 651 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E RVLA +AG IKAF +DI+ T ++ F P ++V R K + + Y Sbjct: 652 ELRVLAHLAGVKSLIKAFNEDKDIHRHTASEIFRVPEEQVDSTMRRNAKAVNFGIIYGMS 711 Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479 A+ ++++ +N + D + Sbjct: 712 DFGLAEQVGVSVGEAREFIKRYFENYPEIKLYMDSNIDFCKKNGYVTTMLNRKRFIREIN 771 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLT-EGF 528 + Q+ A+ + G+A +++K A K + +LQ+ +L + + Sbjct: 772 EKNYMRQEFGKRLAMNSPIQGSAADIIKVAMIKVDELLKKHQLKSKMILQVHDELIFDVY 831 Query: 529 ACVVQEGGSISARRVA 544 +QE I A+ + Sbjct: 832 QEELQEVMEIVAKGMT 847 Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 14/144 (9%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 +R + ++ + + K +N MR+ +G +L Sbjct: 729 FIKRYFENYPEIKLYMDSNIDFCKKNGYVTTMLNRKRFIREIN--EKNYMRQE-FGKRLA 785 Query: 599 ENI-VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL- 650 N +Q + DI+ M + ++L VHDE++ + V + + Sbjct: 786 MNSPIQGSAADIIKVAMIKVDELLKKHQLKSKMILQVHDELIFDVYQEELQEVMEIVAKG 845 Query: 651 MTKNPSWAKGLPLKAEG-YEAKRY 673 MT + LKAEG Y Y Sbjct: 846 MTTAIK--MDVELKAEGSYAVNWY 867 >gi|295706848|ref|YP_003599923.1| DNA polymerase I [Bacillus megaterium DSM 319] gi|294804507|gb|ADF41573.1| DNA polymerase I [Bacillus megaterium DSM 319] Length = 875 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 79/493 (16%), Positives = 160/493 (32%), Gaps = 64/493 (12%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 S +L D V N R + K G +I + + + + Sbjct: 354 SKFKAWLEDGRVKKTVFNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLA 410 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + + ++ A + KG+ S A HV Y K +E Sbjct: 411 TIAKLKGYH----QVQSDEAVYGKGAKRSIAEADQLAEHVIRKAAAVAYLKEVLEKELVE 466 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ E L ++ + +G +ID + ++ E + ++ +K++ I + Sbjct: 467 NEQFELFEKLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEF- 525 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ ++ T +L T IL Sbjct: 526 NINSPKQLGVVLFEKMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQLGKLQST 585 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + DG++ ++TGR S QN+P + Sbjct: 586 YIEGLKKVIHESDGKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR---------------- 628 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S G + AD + IE RVLA IA ++ I AF + DI Sbjct: 629 --------LEEGKKIRGAFVPSQPGWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDI 680 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T F+ ++V+ R K + + Y G ++ ++++ + Sbjct: 681 HTKTAMDVFHVEREEVTANMRRQAKAVNFGIVYGISDYGLSQSLGITRKAAATFIERYLK 740 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + D + S + ++ A+ + GTA Sbjct: 741 SFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGTAA 800 Query: 504 ELVKKAWRAKHQG 516 +++KKA + Sbjct: 801 DIIKKAMIEMDKR 813 >gi|312135240|ref|YP_004002578.1| DNA polymerase i [Caldicellulosiruptor owensensis OL] gi|311775291|gb|ADQ04778.1| DNA polymerase I [Caldicellulosiruptor owensensis OL] Length = 850 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 71/386 (18%), Positives = 135/386 (34%), Gaps = 65/386 (16%) Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 ++ ER L + + G+++D D +L+ + I + L++ I ++ + Sbjct: 447 FVYTNIERPLIPILYEMEKAGFKVDRDALLQYTKEIESKILNLEKQIYQIAGEWF-NINS 505 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L LF + ++ ++ T +L LIL+ + Sbjct: 506 PKQLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQG 565 Query: 295 LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L +A++ GR+ T G + TGR + QN+P + Sbjct: 566 LLQAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY------------------- 605 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ T Sbjct: 606 -----DEGRLIRKVFIPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNVDIHSQTA 660 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 A+ F ID V+ E R+ K + + Y G A+ K + ++ + Sbjct: 661 AEIFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKV 720 Query: 470 STFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKK 508 + D + + + A+ + G+A +++K Sbjct: 721 KEYLDNIVKFARENGYVLTLFNRKRYIKDINSTNRNTRSYAERIAMNSPIQGSAADIMKL 780 Query: 509 AWRAKHQG----------VLQLWKDL 524 A +Q +LQ+ +L Sbjct: 781 AMIKVYQKLKENNLKAKIILQVHDEL 806 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 54/165 (32%), Gaps = 15/165 (9%) Query: 497 KLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVM 551 ++ G + V R++ + G++ D + ++ + R V Sbjct: 662 EIFGVDIDDVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVK 721 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 V + L + K +N+ R+Y ++ N +Q + DI+ Sbjct: 722 EYLDNIVKFARENGYVLTLFNRKRYIKDINSTNR---NTRSYAERIAMNSPIQGSAADIM 778 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 M + I+L VHDE++ E P V + Sbjct: 779 KLAMIKVYQKLKENNLKAKIILQVHDELLIEAPYEEKDIVKRIVK 823 >gi|171911947|ref|ZP_02927417.1| DNA polymerase I [Verrucomicrobium spinosum DSM 4136] Length = 971 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 76/502 (15%), Positives = 158/502 (31%), Gaps = 82/502 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 ++ +L + HN F+ R+ + + P T ++ Sbjct: 442 KEVKTFLSTSKAEKIGHNLKFDLRVFLAHGIEVAGPFFD---TMLVHALVEPDQRHGMDY 498 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L+ + + I + P ++ EY D + T +L Sbjct: 499 LSERYLGY------SPVSITTLIGEKKGATPQKSMAEVPLEPLA---EYAAEDADVTLQL 549 Query: 174 FKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++L P + E L + + G ++D+ + + + + + L E Sbjct: 550 SQKLRPELERLGLMKVFYEIEAPLLPVLAHMEHEGVKVDVPTLEEFGQELLSQANVLRER 609 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I D + L LF + T + + + L + Sbjct: 610 IQGYVDWPF-NLNSPKQLGEVLFDHLKLMEKPKKTATGQYQTNEQTLLTLQGRHPIIDDI 668 Query: 284 SSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L AV+ R+ T A+ TGR + QN+P + Sbjct: 669 LAYRECTKLKSTYVDALPAAVNPLTHRVHTTFHQLMAA-TGRMASTDPNLQNIPIRT--- 724 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGED 396 +R + G L+ AD + IE RV+A ++ + Sbjct: 725 ---------------------DQGREIRKAFVPEKEGWVLMSADYSQIELRVMAELSADP 763 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-----KVFKTM 451 ++AF G DI+ T AK + +D+V E R K++ + Y A ++ T Sbjct: 764 AMMEAFQEGHDIHQATAAKVYGVALDEVLPEMRRTAKMVNFGIIYGISAFGLSQRLGNTS 823 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 + ++ + + + + ++ ++ ++ Sbjct: 824 RTEAAQIIENYFKQYPGVKRYMEDIVTQARTQGYVETLTGRRRYLRDINSSNMTVRSATE 883 Query: 491 EFAVKDKLIGTACELVKKAWRA 512 A+ + GTA +++K A Sbjct: 884 RVAMNAPIQGTAADMIKLAMVN 905 >gi|86607628|ref|YP_476390.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556170|gb|ABD01127.1| DNA polymerase I [Synechococcus sp. JA-2-3B'a(2-13)] Length = 931 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 105/575 (18%), Positives = 181/575 (31%), Gaps = 95/575 (16%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAMPSDLL 58 D ET S L +G + D W+ +QS P Sbjct: 367 DTETTSLDPRDAQLVGIGCCWSEGDIAYLPIGHRQGSNLD------WELVKQSLQPLW-- 418 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL---KNACLA 115 D N ++ +F+ GI + ++ + + +S A Sbjct: 419 ---EDPNRPKSLQNCKYDLSIFRAH-GIRLQGIQF-DPMLASYVLDPEASHNLADLAATH 473 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN K GK + D P A+ + E ++ Sbjct: 474 LNLPTTSYKKLLGKE------QSIADIPISKVAEYCGTDAYCAYRLV-PILTEKLQKTDP 526 Query: 176 RLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 RL L E L + + + G R+D + + + + + QE + L++ + Sbjct: 527 RLWDLFIQVELPLAQVLEEMEWIGIRVDTEFLRQFSQELEQELQSLEQKAYAQAGETF-N 585 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 L LF +D+ + S + +L D L + KL Sbjct: 586 LNSPKQLGSLLFEKLKLDIRKTRKTATGYSTDASVLEKLEGDHPLIETIVQYRTLAKLKS 645 Query: 293 ---NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L V SD GR+ + TGR S QN+P + Sbjct: 646 TYVDALPALVRSDTGRVHTDFN-QTVTATGRLSSSNPNLQNIPIRT-------------- 690 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 S +R I G L AD + IE R+LA ++ E ++ F +GED+ Sbjct: 691 ----------EFSRRIRQAFIPQEGWLLTAADYSQIELRILAHLSQEPALLEGFRSGEDV 740 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA----SHCGLDLQQFSQ 464 + T +++ E+R + K + + Y GA+ F A S LQ+F++ Sbjct: 741 HTLTARLL--LEKQEITSEERRLAKTINYGVIYGMGAQRFARTAGVSLSEAKQFLQRFNE 798 Query: 465 NV-------KSTSTFEDWEQAESHHLWMQDQYP--------------EFAVKDKLIGTAC 503 +ST F + L + +P AV + G+A Sbjct: 799 RYAGIFAYLRSTEAFVEKHGYVETILGRRRYFPNLSRLTGHRKQAELRAAVNAPIQGSAS 858 Query: 504 ELVKKAWRAKHQG----VLQLWKDLTEGFACVVQE 534 +++K A Q +L + + V Sbjct: 859 DIIKVAMVRLRQKLQNFRSRLLLQVHDELVFEVDP 893 >gi|325686398|gb|EGD28428.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK72] Length = 880 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 75/505 (14%), Positives = 162/505 (32%), Gaps = 70/505 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++P+ + + LA+ + + + KG Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + P H+ ++ ++ +L L + E+ L + + G Sbjct: 435 AKRALPEQEQLFEHLARKVQVLLETEKPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + +Q + + L ++I L + L LF G+ L + Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYNLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + +LA + I KL + L EA+++DG++ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372 ++TGR S QN+P +R + Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K + + Y G A +Q + + + + Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVE 768 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520 S + +++ A+ + G+A +++K A + + ++ Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 + + V G + R++ Sbjct: 829 LLQVHDEIVLEVPNGELTAVRQLVK 853 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNGELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|115424492|dbj|BAF33374.1| DNA polymerase I [Bacillus smithii] Length = 876 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 83/526 (15%), Positives = 173/526 (32%), Gaps = 82/526 (15%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKNACLALN 117 DET ++ I ++ I K +LA PS + Sbjct: 362 EDETKKKTVFDAKRTVIALRRH---GIELKGIEFDLLLASYLINPSESPSDFADVAKLHG 418 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL---FGEYCKRDVEATRELF 174 F+ E ++ A + KG+ P H+ + RDV + Sbjct: 419 FN-------EVQSDEAVYGKGAKLKLPDREIYEEHIARKAVGLTKLAETCRDVLKEND-- 469 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 +L D E L L+ + G ++D+D + ++ + + ++++++I +L + Sbjct: 470 -QLSLFYDLEMPLALILADMEWTGVKVDVDRLTEMGDELHNRLQEIEKEIYELAGQEF-N 527 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF G+ ++ ++ T +L + IL Sbjct: 528 INSPKQLGHILFEKMGLPVIKKTKTGYSTSADVLEKLESSHEIVRYILEYRQLGKLQSTY 587 Query: 292 LNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L + V + ++ ++TGR S QN+P + Sbjct: 588 IDGLLKVVHQNTHKVHTRFN-QALTQTGRLSSADPNLQNIPIR----------------- 629 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + S + AD + IE RVLA I+G+ I+AF DI+ Sbjct: 630 -------LEEGRKIRQAFVPSEKDWVIFSADYSQIELRVLAHISGDQKLIEAFREDMDIH 682 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T F+ ++V+ R K + + Y G ++ G ++++ + Sbjct: 683 TKTAMDVFHVQKEEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGQFIERYFAS 742 Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + D + S + ++ A+ + G+A + Sbjct: 743 YPDVKEYMDEIVREAKRKGYVTTLLHRRRYLPEITSRNFNVRSFAERTAMNTPIQGSAAD 802 Query: 505 LVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 ++KKA K Q ++ + + V + +++ Sbjct: 803 IIKKAMIDMAERLKKEQLKSRMLLQVHDELIFEVPPDEIETMKKIV 848 >gi|294501500|ref|YP_003565200.1| DNA polymerase I [Bacillus megaterium QM B1551] gi|294351437|gb|ADE71766.1| DNA polymerase I [Bacillus megaterium QM B1551] Length = 875 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 78/493 (15%), Positives = 159/493 (32%), Gaps = 64/493 (12%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 S +L D V N R + K G +I + + + + Sbjct: 354 SKFKAWLEDGRVKKTVFNGK--RTIVSLKWAGHEIKGIE-HDVMIASYILNPAEANDDLA 410 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + + ++ A + KG+ S A HV Y K +E Sbjct: 411 TIAKLKGYH----QVQSDEAVYGKGAKRSIAEAAQLAEHVIRKAAAVAYLKEVLEKELVE 466 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ E L ++ + +G +ID + ++ E + ++ +K++ I + Sbjct: 467 NEQFELFEKLEMPLAIVLADMEYQGVKIDRARLDEMGEDLREQLEKIEAKIYEYAGQEF- 525 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ ++ T +L T IL Sbjct: 526 NINSPKQLGVVLFEKMQLPVIKKTKTGYSTSADVLEQLASTHDIIPEILQYRQLGKLQST 585 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + DG++ ++TGR S QN+P + Sbjct: 586 YIEGLKKVIHESDGKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR---------------- 628 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S + AD + IE RVLA IA ++ I AF + DI Sbjct: 629 --------LEEGKKIRGAFVPSQPDWLIFAADYSQIELRVLAHIADDEKLIDAFKHDLDI 680 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T F+ ++V+ R K + + Y G ++ ++++ + Sbjct: 681 HTKTAMDVFHVEREEVTSNMRRQAKAVNFGIVYGISDYGLSQSLGITRKAAATFIERYLK 740 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + D + S + ++ A+ + GTA Sbjct: 741 SFPGVQEYMDTIVRDAKEKGYVTTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGTAA 800 Query: 504 ELVKKAWRAKHQG 516 +++KKA + Sbjct: 801 DIIKKAMIEMDKR 813 >gi|291525363|emb|CBK90950.1| DNA polymerase I [Eubacterium rectale DSM 17629] gi|291527050|emb|CBK92636.1| DNA polymerase I [Eubacterium rectale M104/1] Length = 903 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 89/487 (18%), Positives = 162/487 (33%), Gaps = 79/487 (16%) Query: 94 ICTSVLARTNGLPSSLKN-----ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 ++A P + A L K GK + K + DC Sbjct: 418 YFDMMVAAYLINPLVGEYPYDAVAKDYLGLMLSSKKDYLGKLDFTQMMKED-EKKAVDCA 476 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 AW+ ++ E R D E L + + + G R D + + Sbjct: 477 CYEVYTAWKSKPVLLQKLKEMDMLTLYR-----DIELPLVFVLYDMENEGIRADGIKLKE 531 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + +A +L++ I + + L + LF G+ ++ + Sbjct: 532 YGDKLAVSITELEKKIYEAAGEEF-NINSPKQLGVILFEKLGLPNEKKTK--TGYSTAAD 588 Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +LA + + + KL + LS ++SDG++ TL + TGR S Sbjct: 589 VLEKLAPEYPIVADILEYRQLTKLKSTYADGLSGYIASDGKIHTTLN-QTITATGRLSST 647 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R + G V +D + Sbjct: 648 EPNLQNIPIR------------------------IELGKLIRKVFLPEEGDLFVDSDYSQ 683 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA ++G++ I+AF NG+DI+ +T + F+TP D+V+ QR K + + Y Sbjct: 684 IELRVLAALSGDERMIEAFKNGQDIHRSTASLVFDTPFDEVTDLQRRNAKAVNFGIVYGI 743 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------------ 481 G + + + F D ++ Sbjct: 744 SAFGLSNDLGISRKEAQGYIDSYFVKYPKIKEFLDQTVLDAKKNGYTKTMFGRIRPIPEL 803 Query: 482 --HLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGF 528 +MQ Q+ A+ + GTA +++K A H +LQ+ +L Sbjct: 804 NSSNFMQRQFGERVAMNSPIQGTAADIIKIAMIRVHDRLLDEGLKSRLILQVHDELLIET 863 Query: 529 ACVVQEG 535 ++ Sbjct: 864 KEAEKDK 870 >gi|118444648|ref|YP_877757.1| DNA polymerase I [Clostridium novyi NT] gi|118135104|gb|ABK62148.1| DNA polymerase I, polA [Clostridium novyi NT] Length = 878 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 85/511 (16%), Positives = 175/511 (34%), Gaps = 97/511 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNA 112 L +E + V H+S ++ KK +I +K + +A PS LK+ Sbjct: 378 LKNLFENEKIKKVCHDSKKVYVVLKKH---NIAAKNIAFDTKIAAYLLQPSKSDYMLKDL 434 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + K + K + D ++N E Sbjct: 435 IEEMLLLSLKD-DDNIKINETYYIKDVYEKLEKDIKKSN------------------MEE 475 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L L E L + ++ G+R+D + + ++ E +E + L+++I +L D Sbjct: 476 L------LYTVELPLIEVLASMECEGFRVDENRLTEIGEKFKKEIETLEKEIHELADEEF 529 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L LF + ++ ++ T +L + + I+ + Sbjct: 530 -NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIIEKIIEYRQITKLDS 588 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + D ++ + + TGR S QN+P + Sbjct: 589 TYVEGLKNVIDEDAKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKH--------------- 632 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + +N + ++ AD + IE R+L+ IA ++ I AF + +DI Sbjct: 633 ---------EMGREIRKVFVPNNDESVIFSADYSQIELRILSHIADDEKLIDAFKHHKDI 683 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464 + T ++ F PID+V+ R+ K + + Y GA K + + Sbjct: 684 HTITASEVFKVPIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFS 743 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + D + +S + ++ A+ + G+A Sbjct: 744 RYPNVKKYIDEIISKAEVDGFVTTILNRKRYIPEIQSRNKIVRGFGERLAMNTPIQGSAA 803 Query: 504 ELVKKAWRA----------KHQGVLQLWKDL 524 +++K A K +LQ+ +L Sbjct: 804 DIIKLAMVEVYNELKNRNLKSTLILQVHDEL 834 >gi|225374419|ref|ZP_03751640.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] gi|225213657|gb|EEG96011.1| hypothetical protein ROSEINA2194_00034 [Roseburia inulinivorans DSM 16841] Length = 907 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 65/369 (17%), Positives = 128/369 (34%), Gaps = 58/369 (15%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + G ID + + E +A K+L+ I + + L Sbjct: 510 IEMPLVFTLADMEHTGIAIDAANLKEYGEKLAVRIKELETRIYQEAGEEF-NINSPKQLG 568 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297 + LF + ++ + + +LA + + + KL + L+ Sbjct: 569 VILFEKLEMPYGKKTKTG--YSTAADVLDKLAPEYPIVADILEYRQLTKLKSTYADGLAN 626 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + DGR+ + + TGR S QN+P + Sbjct: 627 YIKEDGRIHTSFN-QTITVTGRLSSTEPNLQNIPMR------------------------ 661 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + + G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F Sbjct: 662 IELGRLIRKAFLPAKGCVFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQVF 721 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + P D+V+ QR K + + Y G ++ ++++ + TF Sbjct: 722 HIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKTFL 781 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 D + S + + A+ + GTA +++K A Sbjct: 782 DGLVEDAKKNGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNAPIQGTAADIIKIAMIR 841 Query: 513 KHQGVLQLW 521 H +L+ Sbjct: 842 VHDRLLEEH 850 Score = 45.9 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M +++TVHDE++ ET + Sbjct: 814 QRSFGERVAMNAPIQGTAADIIKIAMIRVHDRLLEEHLKSRLIITVHDELLIETAEDEID 873 Query: 643 SVGTL 647 V + Sbjct: 874 RVKEI 878 >gi|126658596|ref|ZP_01729743.1| DNA polymerase I [Cyanothece sp. CCY0110] gi|126620183|gb|EAZ90905.1| DNA polymerase I [Cyanothece sp. CCY0110] Length = 583 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 109/619 (17%), Positives = 195/619 (31%), Gaps = 126/619 (20%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L + V N+ F+R++FK I + ++LA P Sbjct: 45 DSLRTILESKNYPKVFQNTKFDRLIFKHQ---GINLDGVVFDTMLASYVLHPE------K 95 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + SE + EG G + V EYC D AT L Sbjct: 96 SHKLSELCEQYLEGITSQNYKELGIGKKQTIADLEIDKV------AEYCGMDAYATFLLV 149 Query: 175 KRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + L L + E+ L + + D G ID + + +L + + ++ L+E Sbjct: 150 EPLKNELKQVSSLEKLLLEVEQPLEAVLSIMEDTGILIDTEYLGELSKQLEKDLLILEEK 209 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 ++ G + L LF ++ + H+ + +L D + Sbjct: 210 AYEVAGGKF-NLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLDKLKGDHPIIDYI 268 Query: 284 SSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L E V R+ + TGR S QN+P + Sbjct: 269 LEYRTLSKLKSTYIDALPELVDTKTKRIHTNFN-QSVTATGRLSSSNPNLQNIPIRT--- 324 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 S +R I LV AD + IE R+LA ++ E Sbjct: 325 ---------------------EFSRQIRQAFIPQKDWLLVSADYSQIELRILAHLSQEPV 363 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + A+ N ED++ T F +K++ ++R +GK + + Y G++ A G+ Sbjct: 364 LLNAYQNTEDVHTVTAKLLFEK--EKITSQERNLGKTINFGVIYGMGSQR---FAREAGV 418 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + + + + + + M+ + ++G Sbjct: 419 TAAEGKEFI--NKYRQRYAKVFEYLESMKKEAIANGYVTTILGR---------------- 460 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 R + R D + + + Y+D Sbjct: 461 ----------------------RRYFNFFDDNLYRFRGHDPQTIDLNQLNINYND----- 493 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIV 633 SQL+R +Q S DI+ M + N ++L VHDE+V Sbjct: 494 -------SQLLRAAANAP------IQGSSADIIKIAMVKIQEILNHCQANLLLQVHDELV 540 Query: 634 SETPDTPYFSVG-TLCSLM 651 E P + + + M Sbjct: 541 FEIPVKEWEKLENKIKETM 559 >gi|295092015|emb|CBK78122.1| DNA polymerase I [Clostridium cf. saccharolyticum K10] Length = 986 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 73/442 (16%), Positives = 143/442 (32%), Gaps = 68/442 (15%) Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 SLK + GK I + +L + + D Sbjct: 524 SLKEGKEQEKTEPVREEQTAGKVSIRTALNP-AEQCICHMAYTAWKSRERLTKKLEELD- 581 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 +ELF + E L + G + + + E + + ++L+++I Sbjct: 582 --MKELFYTI------EMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYGE 633 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T + L LF + ++ + + +LA + + + Sbjct: 634 TGEHF-NINSPKQLGEILFGKMELPYGKKTKTG--YSTAADVLEKLAPEYPVVQKILDYR 690 Query: 288 AILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L+ + DGR+ GT + TGR S QN+P Sbjct: 691 QLTKLKSTYADGLAGYIREDGRIHGTFN-QTITATGRLSSTEPNLQNIP----------- 738 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + G V AD + IE RVLA ++G++ I+A+ Sbjct: 739 -------------VRMELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAY 785 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 EDI+ T ++ F+ P+++V+ QR K + + Y G ++ Sbjct: 786 RKAEDIHAITASEVFHVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSITRKEALEY 845 Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497 + ++ + F D + S + + A+ Sbjct: 846 INRYFETYPDVKKFLDRLVEEGKEKGYVTTMFKRRRPVPELSSKNFMQRSFGERVAMNSP 905 Query: 498 LIGTACELVKKAWRAKHQGVLQ 519 + GTA +++K A + + Sbjct: 906 IQGTAADIIKIAMNRVDNRLRR 927 >gi|320103460|ref|YP_004179051.1| DNA polymerase I [Isosphaera pallida ATCC 43644] gi|319750742|gb|ADV62502.1| DNA polymerase I [Isosphaera pallida ATCC 43644] Length = 1040 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 74/383 (19%), Positives = 128/383 (33%), Gaps = 69/383 (18%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 ER L + + + G +D + +L + L+ +L S LR+ Sbjct: 637 ERPLIEILADMEEAGVALDRARLRQLSRDFSARLTDLERQAHQLAGEPFNLS-SPPQLRV 695 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEA 298 LF G+ + ++ + + +LA L ++ I KL + L Sbjct: 696 ILFERLGLPPRGKTPKG-EASTAQEVLEELAALHQLPKVLLEHRRIEKLKNTYLDALPNL 754 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 DGR+R T G + TGR S QN+P + Sbjct: 755 THPDGRIRATFN-QGVTATGRLSSSEPNLQNIPVRT------------------------ 789 Query: 359 LASDCVRSCIIASNG--KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 VR +A + + L+ AD + IE RVLA + + ++AF DI+ AK Sbjct: 790 EEGRQVRQAFVAGDPARQVLLTADYSQIELRVLAHFSRDPALLRAFEEDRDIHADVAAKI 849 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F +D V+ +QR + K + + Y G A S + + F Sbjct: 850 FGVALDSVTSDQRRMAKTVNFGVIYGLSAHGLASRLGISQSEAAAFINAYFDQYPHVEAF 909 Query: 473 EDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKAWR 511 ++ + A+ + G+A +L+K+A Sbjct: 910 MTRVLTQARDTGRVETLEGRRRAINGIKHVEGRHRNLAERTAINTVIQGSAADLIKRAMI 969 Query: 512 AKHQG----------VLQLWKDL 524 A Q +LQ+ +L Sbjct: 970 AVDQRLKETKLPARMILQIHDEL 992 >gi|299132621|ref|ZP_07025816.1| DNA polymerase I [Afipia sp. 1NLS2] gi|298592758|gb|EFI52958.1| DNA polymerase I [Afipia sp. 1NLS2] Length = 1008 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 92/492 (18%), Positives = 172/492 (34%), Gaps = 71/492 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----SLK 110 L + + E V+ + F ++ + I + + + A G + SL Sbjct: 480 DVLRKLMESEAVLKSGLDIKFISVMLAQH-KITLRTTDDVQLMSYALDAGRGAHDIESLA 538 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEA 169 LA +H + G+ ++ + Y A+ + + W L E Sbjct: 539 QKWLAHAAIKHGDVIGSGRNKLSLDQVTIERATEYGAETADIIIRLWLLMKARLIS--ER 596 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +++ L ER L + + RG ID ++ +L AQ +L+++I K+ Sbjct: 597 MNNVYESL------ERPLIGVLARMERRGIMIDRQVLSRLSGDFAQTASRLEDEIRKIAG 650 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSA 288 I + L +F G+ ++ T S S + LA++ + R Sbjct: 651 EDI-NPGSPKQLGDVIFGKMGLPGGQKTK-TGAWSTSASILEDLAEEGHVFPRKILDWRQ 708 Query: 289 ILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KL + L V+ + T A+ TGR S QN+P + Sbjct: 709 VSKLKSTYTDALPNYVNPQTQRVHTTYALAATTTGRLSSNEPNLQNIPVRTED------- 761 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA G KLV AD + IE R+LA IA +AF Sbjct: 762 -----------------GRKIRRAFIAEKGHKLVSADYSQIELRLLAEIADIPVLKQAFH 804 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 + DI+ T ++ F P+ + E R K + + Y G A G + Sbjct: 805 DKLDIHAMTASEMFGVPVKDMPAEVRRRAKAINFGIIYGISAFGLANQLGIPREEAGAYI 864 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + ++ + ++ A+ +L Sbjct: 865 KKYFERFPGIRAYMDATRDFCREHGYVETLFGRKCHYPDIKASNASLRAFNERAAINARL 924 Query: 499 IGTACELVKKAW 510 GTA +++++A Sbjct: 925 QGTAADIIRRAM 936 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 18/95 (18%) Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN--- 620 R+ Y D+K + R + + N +Q + DI+ M Sbjct: 896 GRKCHYPDIKASNA----------SLRAFNERAAINARLQGTAADIIRRAMIRMEDALAE 945 Query: 621 ---GYDIVLTVHDEIVSETPDTPYF-SVGTLCSLM 651 ++L VHDE+V E PD+ ++ + +M Sbjct: 946 KKLAARMLLQVHDELVFEVPDSEVGDTIPVIQEVM 980 >gi|260435580|ref|ZP_05789550.1| DNA polymerase I [Synechococcus sp. WH 8109] gi|260413454|gb|EEX06750.1| DNA polymerase I [Synechococcus sp. WH 8109] Length = 986 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 109/637 (17%), Positives = 201/637 (31%), Gaps = 142/637 (22%) Query: 51 SAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 +P +L L N+ ++R++ + + + + ++LA L Sbjct: 438 EQLPLETVLTALAPWLASSNHPKTLQNAKYDRLILLRH---GVALEGVVIDTLLADY--L 492 Query: 106 PSSLKNACLALNFSEHLTKM-EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L L L+ + K + P + YC Sbjct: 493 RDAAAKHGLELMAEREFGFQPTAFTDLVGK--KQTFADVPLEPAS-----------LYCG 539 Query: 165 RDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 DV TR L +L+PL + E+ L + + G RID+ + L E Sbjct: 540 MDVHVTRRLALLLRHQLEAMGPQLMPLLEQVEQPLEPVLARMESTGIRIDVPYLQGLSEE 599 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + ++L+ D + L LF G+D + + + Sbjct: 600 MGSTLQQLESDAKAAAGVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEK 658 Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQ 326 L D + L + KL + L + V + GR+ + TGR S Sbjct: 659 LGNDHPVVPLVLEHRVLSKLKSTYIDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPN 717 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + S +R + G L+ AD + IE Sbjct: 718 LQNIPVRT------------------------EYSRRIRKAFLPQEGWTLLSADYSQIEL 753 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ +G+D++ T + ++VS ++R +GK + + Y GA+ Sbjct: 754 RILTHLSGEEVLQEAYRSGDDVHALTARLLLDK--NEVSPDERRLGKTINFGVIYGMGAQ 811 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 F A G+ + + + ++Q + A+ + T Sbjct: 812 RF---ARETGVSQSEAKEFLA------RYKQRYPKVFAFLELQERLALSRGYVET----- 857 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPS 564 + RR + R + R K + I L Sbjct: 858 ------------------------------ILGRRRPFHFDRNGLGRLLGKAPLEIDLNV 887 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 +RR +Q +R +Q S DI+ M Sbjct: 888 ARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQDALQRQ 928 Query: 621 --GYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654 ++L VHDE+V E P+ + + M + Sbjct: 929 GLPAQLLLQVHDELVLEVAPNALDATRELVVQTMEQA 965 >gi|302340150|ref|YP_003805356.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] gi|301637335|gb|ADK82762.1| DNA polymerase I [Spirochaeta smaragdinae DSM 11293] Length = 911 Score = 238 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 92/517 (17%), Positives = 173/517 (33%), Gaps = 87/517 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLPSS 108 L++ +V + HN ++ + ++ L D W+ + P + Sbjct: 391 ERLVRLTSSPSVRIIGHNFKYDYKVLRRWGVVTKNLAFDTMVAAWLLDTTANSYGMDPLA 450 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + K K F S+++ A F E +R + Sbjct: 451 ----ASLLGYKTISFKDVVPKD--GLFQDISVETATRYA--AEDADITFRFYELFRRQL- 501 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 R L K L E L + + G + D + + ++ +++DI + Sbjct: 502 KERGLEKLFFEL---EMPLVPILAEMECAGITLLSDRLEAYGRELEKDLGTIEDDIWQAC 558 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + T L+ LF + + ++ + +S + +LA++ ++ L + Sbjct: 559 GHSF-NINSTKQLQQVLFEERKLTPIKKTKTGYSTDIS--VLEELAREDVVPLLVLRHRS 615 Query: 289 ILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KL + L + V+ GR+ L G + TGR S QN+P + Sbjct: 616 LAKLKSTYVDALPKLVNPETGRIHTQLIQTG-TATGRLSSKDPNLQNIPIR--------- 665 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +RS + + G + AD + IE VLA ++ + +AF Sbjct: 666 ---------------DEDGRRIRSAFVPAEGNLFISADYSQIELVVLAHLSEDPELSQAF 710 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLD 458 +G D++ T + F+ VS EQR I K + + Y A + S Sbjct: 711 RSGGDVHRRTASLIFDVSEADVSSEQRRIAKTINFGVMYGMSAFRLSRELGISRSRADSF 770 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 + + + +F S + + AV Sbjct: 771 ISAYFRRYFRIQSFMRKVVQETEQSGVSKTLLGRERSIPAINSRNKTEKAGAERIAVNTP 830 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + GTA ++VK A A K + VLQ+ +L Sbjct: 831 IQGTAADIVKLAMLAVSRRMASEELKSKMVLQIHDEL 867 Score = 40.5 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 598 TENIVQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M ++ +VL +HDE++ E P + L Sbjct: 827 VNTPIQGTAADIVKLAMLAVSRRMASEELKSKMVLQIHDELLFEVPFDEADRMEGL 882 >gi|154148288|ref|YP_001407237.1| DNA polymerase I [Campylobacter hominis ATCC BAA-381] gi|153804297|gb|ABS51304.1| DNA polymerase I (POL I) [Campylobacter hominis ATCC BAA-381] Length = 875 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 104/585 (17%), Positives = 208/585 (35%), Gaps = 100/585 (17%) Query: 2 SKLFIDIETRS-PQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 ++ D ET S K+ +++ + + A+++ P L + L Sbjct: 313 KEIAFDTETTSVDSHNAKIVGFSFCWDEKSSFYVPLAHSYLGAPDML-----DKNIAKRL 367 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 ++ + T + N ++ + + G++ P ++ T +LA +S+ LA Sbjct: 368 IEAIY--TKFIIGQNLKYDFRIVRNNFGLN-PPAKYADTMILAWLMDPDNSVGMDNLAKR 424 Query: 118 FSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + ++ T E F + + + + + + ++C +L K Sbjct: 425 YFDYDTIKFENVVKKGENFSSVDVKNAANYASEDAWI-TLKFYKKFCGILSTELLDLAKN 483 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E + + + G ++D+ + ++ IA++ K L +I L+ + Sbjct: 484 L------EFPFIKVLLNMEENGIKMDISSLKEMINEIAEQLKILTNEIYDLSGENF-NIN 536 Query: 237 QTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNRLASSGSA 288 T L LF G+ ++ T +S LS H+ + ++ L +L S+ + Sbjct: 537 STKQLGEVLFEHLGLPAKKKTKTGYSTNESALSAISELHAVVPKILAYRELYKLQSTYTE 596 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L L + R+ G + TGR S QN+P Sbjct: 597 PLLALALKN---DENRIFSNFLQTG-TSTGRLSSKNPNLQNIPAH--------------- 637 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G + +R+C ++ +G V D + IE R+LA + + ++AF EDI Sbjct: 638 ---------GSMAVQMRNCFVSKDGFSFVGLDYSQIELRLLAHFSLDKELLRAFREDEDI 688 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQ 464 + T F T KE+RA+ K + L Y GA S ++++ + Sbjct: 689 HSRTAISIFGTS----DKEKRAVAKTINFGLIYGMGASKLSNELGISRSDAKDYIEKYFK 744 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACE 504 S F + ++E+ Y +V K G+A + Sbjct: 745 AFASIKNFMENLKSEAKKNGYTTTLFGRKRYFDFANATPMQFAMYERESVNTKFQGSAAD 804 Query: 505 LVKKAWRAKHQ---------------GVLQLWKDLTEGFACVVQE 534 ++KKA + ++ D++E F +QE Sbjct: 805 IIKKAMVEISPFLNENTRLLLQIHDELIFEVRDDMSESFGKKMQE 849 Score = 41.3 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 4/81 (4%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDE 631 G Y + A + M+ Y + Q + DI+ + M + ++L +HDE Sbjct: 771 GRKRYFDFANATPMQFAMYERESVNTKFQGSAADIIKKAMVEISPFLNENTRLLLQIHDE 830 Query: 632 IVSETPDTPYFSV-GTLCSLM 651 ++ E D S + +M Sbjct: 831 LIFEVRDDMSESFGKKMQEIM 851 >gi|168204822|ref|ZP_02630827.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] gi|170663672|gb|EDT16355.1| DNA polymerase I [Clostridium perfringens E str. JGS1987] Length = 866 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 85/557 (15%), Positives = 177/557 (31%), Gaps = 104/557 (18%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC 68 E S + K+ + Y E+ Y + + ++ ++ +E + Sbjct: 329 EKYSTIEIDKIFI-NYDEK------NYLINFKE-----LVKEEENIKAFKEFFENEDTLK 376 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 ++ KK LGID + C + L N+ ++EG Sbjct: 377 NGYSIKNALTALKK-LGIDFNGLAFDCELAAYLIDSSKGEYTLLSLINNYLSKFPNVKEG 435 Query: 129 KALIA--RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 + + F K + + D E Sbjct: 436 EEDLVGISFMKELTLVLKKKIEEEKMERL------------------------MYDIELP 471 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + ++ G++++ D++ +L +E ++ ++I +L D + L LF Sbjct: 472 LETVLSSMESIGFKVNKDILDELSIKFKRELEETQKEIFELADEEF-NINSPKQLGKILF 530 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 + ++ ++ T +L + I S + L + +DG Sbjct: 531 EKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIEKITYFRQLSKIYSTYVEGLKSVIDTDG 590 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 591 SIHSTFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGRE 625 Query: 364 VRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R I G L+ AD + IE RVLA I+G++ I AF + DI+ T ++ F P++ Sbjct: 626 IRKVFIPKKEGDLLISADYSQIELRVLAHISGDENMIDAFNHHSDIHTKTASEVFKVPVE 685 Query: 423 KVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF------ 472 +V+ R+ K + + Y G ++ + + + + Sbjct: 686 EVTPLMRSRAKAVNFGIVYGIGDFSLSQDLNISRKEAKEYMDIYFERYPKIKEYISKVIH 745 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH--- 514 +A + + ++ A+ + GTA +++K A + Sbjct: 746 EAQTKGYVLTMLNRRRYIPEANASNKIVKALGERLAMNAPIQGTAADIIKLAMVNVYNKL 805 Query: 515 -------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 806 KELNLNSKLILQVHDEL 822 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 10/105 (9%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + +H L + + N + + G +L N +Q + D Sbjct: 736 IKEYISKVIHEAQTKGYVLTMLNRRRYIPEANASNKI---VKALGERLAMNAPIQGTAAD 792 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 I+ M N ++L VHDE++ V L Sbjct: 793 IIKLAMVNVYNKLKELNLNSKLILQVHDELIINVVKGELDIVKKL 837 >gi|87124844|ref|ZP_01080692.1| DNA polymerase I [Synechococcus sp. RS9917] gi|86167723|gb|EAQ68982.1| DNA polymerase I [Synechococcus sp. RS9917] Length = 996 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 127/703 (18%), Positives = 220/703 (31%), Gaps = 170/703 (24%) Query: 5 FIDIETRSPQP-----LPKVGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 +D ET S L VGV + + EP L D + +P D Sbjct: 392 ALDTET-SDLNPFKAQLVGVGVCWGPELDDLAYIPVGHRPSAEP-SLEDSSAIQQLPLDT 449 Query: 58 LQY-----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKN 111 + L N+ ++R++ + +P + ++LA + Sbjct: 450 VLAQLAPWLASAEHPKALQNAKYDRLILLRH---GLPLGGVVMDTLLADYLRDAAAKHGL 506 Query: 112 ACLALN--------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 +A FS+ + K ++GKA F + I+ YC Sbjct: 507 DAMAERDYGIQPTLFSDLVGKAKDGKASC--FAEVEINQAA----------------LYC 548 Query: 164 KRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQE 211 DV TR L RL+PL D E L + + G RID + L Sbjct: 549 GMDVHLTRRLALDLRQQLAAMGPRLLPLLDQVELPLEPVLALMEATGIRIDHPYLAALST 608 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 +AQ ++L+ + + + L LF G+D + + Sbjct: 609 EMAQTLERLETEAKQAAGMEFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGYSTDATVLE 667 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVF 325 +L +D + L + KL + L + V + GR+ + TGR S Sbjct: 668 KLEQDHPVVPLVLEHRTLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNP 726 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + S +R + G +L+ AD + IE Sbjct: 727 NLQNIPVRT------------------------EFSRRIRKAFLPQAGWQLLSADYSQIE 762 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+L ++GE+ +A+ +G+D++ T V+ ++R +GK + + Y GA Sbjct: 763 LRILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKKAVTADERRLGKTINFGVIYGMGA 820 Query: 446 KVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + F + L ++ + F + + A+ + T Sbjct: 821 QRFARETGVSQAQAKEFLSKYKERYPKVFAFLELQ-------------ERLALSRGYVET 867 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVH 559 + RR + R + R K + Sbjct: 868 -----------------------------------ILGRRRPFHFDRNGLGRLLGKDPLE 892 Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 I L +RR +Q +R +Q S DI+ M Sbjct: 893 IDLEVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQA 933 Query: 620 NGYD------IVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNP 655 ++L VHDE+V E T V L + M + Sbjct: 934 ALEQQSLPARLLLQVHDELVLEVDPTALERVRQLVVTTMEQAI 976 >gi|325680927|ref|ZP_08160464.1| DNA-directed DNA polymerase [Ruminococcus albus 8] gi|324107391|gb|EGC01670.1| DNA-directed DNA polymerase [Ruminococcus albus 8] Length = 857 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 79/407 (19%), Positives = 144/407 (35%), Gaps = 68/407 (16%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L ++ E L + ++ G R D D + + + + ++ + L I L G Sbjct: 451 EMLKLFNEVEMPLCEVLASMEHYGVRADTDGIREFGKGLKKDIEALTSQIYDLAGGEFNI 510 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 + L LF G+ ++ + + +LA + L + KL Sbjct: 511 A-SPKQLGEVLFEKLGLPAKKKTKSGYSTNAE--VLEELADKHPIVGLVLEYRTLTKLNS 567 Query: 293 ---NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++L + V +DGR+R + +RTGR S QN+P ++ Sbjct: 568 TYVDSLLKEVEADGRVRSVFK-QTETRTGRISSTEPNMQNIPVRK--------------- 611 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A +G + AD + IE RVLA + G++ K FA+G DI+ Sbjct: 612 ---------EIGRNMRKFFVAGDGYTFLDADYSQIELRVLAEVCGDENMRKTFADGTDIH 662 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQN 465 T ++ F P D V E R+ K + + Y GA K ++ + N Sbjct: 663 TMTASQVFGIPADAVLPEMRSAAKAVNFGIIYGIGAFSLSKDIGVSVKEAKQYIKNYLDN 722 Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 S F D + + + MQ A+ + G A + Sbjct: 723 FPKVSEFMDKTVEDGIKNGYVTTIFGRRRYIPELAATNKVMQAFGKRAAMNAPIQGAAAD 782 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541 ++K A ++ +LQ+ +L +E + Sbjct: 783 IIKMAMVKVYKRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAILK 829 Score = 45.5 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 9/113 (7%) Query: 551 MRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 + + + + Y + G Y+ + + +G + N +Q + D Sbjct: 723 FPKVSEFMDKTVEDGIKNGYVTTIFGRRRYIPELAATNKVMQAFGKRAAMNAPIQGAAAD 782 Query: 609 ILCEGM------KNATKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654 I+ M A K ++L VHDE++ E PD + L M K Sbjct: 783 IIKMAMVKVYKRLKAEKLDARLILQVHDELIIEVTPDDKEKAKAILKEEMEKA 835 >gi|124022578|ref|YP_001016885.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] gi|123962864|gb|ABM77620.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9303] Length = 986 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 116/683 (16%), Positives = 216/683 (31%), Gaps = 144/683 (21%) Query: 1 MSKLFIDIETRSPQP----LPKVGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP 54 + + +D ET + P L +GV + + P +L + +P Sbjct: 385 LKPVALDTETTALNPFCAELVGLGVCWGEGLQDLAYIPIGH---HPPAELLEAEAACQLP 441 Query: 55 -SDLLQY----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL 109 +L+ L N+ ++R++ + + + + ++LA L + Sbjct: 442 LEAVLKAIAPWLASNDHPKALQNAKYDRLILLRH---GLALEGVVMDTLLADY--LRDAA 496 Query: 110 KNACLALNFSEHLTKMEEGKALI----ARFCKGSIDS-PPYDCTRANHVQAWQLFGEYCK 164 L + G + + F +I + Y + + L Sbjct: 497 AKHGLEVMAEREFKITPTGFSELVGKGQTFADVAIPTASLYCGMDVHLTRRLALRLRAQL 556 Query: 165 RDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 D+ A +L+PL + E+ L + + G RIDL + L + + ++L+E Sbjct: 557 EDMGA------KLLPLLEQVEQPLEPVLALMEATGIRIDLPYLQTLSVELGETLERLEEQ 610 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + L LF G++ + + +L D + L Sbjct: 611 AREAAGVDFNLA-SPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLV 669 Query: 284 SSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL + L + V S GR+ + TGR S QN+P + Sbjct: 670 LEHRVLSKLRSTYVDALPQLVESETGRVHTDFN-QAVTATGRLSSSNPNLQNIPIRT--- 725 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 S +R + +L+ AD + IE R+L ++GE+ Sbjct: 726 ---------------------EFSRRIRKAFLPQENWQLLSADYSQIELRILTHLSGEEV 764 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMAS 453 +AF NG+D++ T + D+VS ++R +GK + + Y GA+ F + Sbjct: 765 LQEAFRNGDDVHALTARLLLDK--DEVSSDERRLGKTINFGVIYGMGAQRFARSTGVSQA 822 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 L ++ Q TF + + A+ + + T Sbjct: 823 EAKDFLSRYKQRYAKVFTFLELQ-------------ERLALSEGYVETLL---------- 859 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS-- 571 RR + R + R L Sbjct: 860 -------------------------GRRRPFHFDRNGL-------------GRLLGKDPM 881 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625 D+ D + +Q +R +Q S DI+ M + ++ Sbjct: 882 DIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQEKLTAADLPARLL 935 Query: 626 LTVHDEIVSETPDTPYFSVGTLC 648 L VHDE+V E T V L Sbjct: 936 LQVHDELVLEVDPTALEDVQQLV 958 >gi|308234078|ref|ZP_07664815.1| DNA polymerase I [Atopobium vaginae DSM 15829] gi|328943901|ref|ZP_08241366.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] gi|327491870|gb|EGF23644.1| DNA-directed DNA polymerase I [Atopobium vaginae DSM 15829] Length = 1030 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 84/509 (16%), Positives = 159/509 (31%), Gaps = 96/509 (18%) Query: 117 NFSEHLTKMEEGKALIARFCKGSIDS--PPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + +L + C + + P + + L + A R L+ Sbjct: 559 GLAAYLLNSDANDYSWQTLCSAYLPTFVYPDTTDDTDEPNEYAL-------EAIAVRALY 611 Query: 175 KRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 L L + E L + + G D L+ + ++ E + ++ Sbjct: 612 PVLRELLHTDGSDDLFYELELPLIPVLLHMERNGIYCDKHLLAEQSRALSHELNAMSLEL 671 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKDLI 278 +L + L LF + G+ + + T L+ ++ LI Sbjct: 672 RRLAQQDF-NIDSPMQLSHVLFDVWGLPTKGLKKTRRGYYSTNAQTLASLSMADERVQLI 730 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L+ L+ L + SDGR+ T A+ TGR S QN+P + Sbjct: 731 LDYRERMKIKNTYLDALVHDIRSDGRIHSTFNQTIAA-TGRLSSSDPNLQNIPTRS---- 785 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 VR + + D + IE R+LA ++ ++ Sbjct: 786 --------------------SLGHRVRKAFVLPRNHLFLACDYSQIELRLLAHLSQDEHL 825 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I AF G D + T A+ F+ D+V+ R+ K + + Y G A K Sbjct: 826 IHAFQTGADFHAATAARIFHVSPDEVTPALRSRAKAVNFGIVYGQQAFGLATSLKISRKE 885 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 + ++ + F D Q +S + ++ A Sbjct: 886 AQEMIDRYFEAYPGVRKFLDESVQFAREHSYVPTMYGRKRHIAQIDSRNFQLRSFAERTA 945 Query: 494 VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + G+A +++K A + +LQ+ +L E Sbjct: 946 MNHPMQGSAADIIKLAMIEVEKQFAQLGLASKLILQIHDELDFEVVPEELE--------- 996 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSD 572 V +V R + V + +P + Y+D Sbjct: 997 -RVSSVVKRAMEGVVTLRVPLIAEISYAD 1024 >gi|239637989|ref|ZP_04678950.1| DNA polymerase I [Staphylococcus warneri L37603] gi|239596552|gb|EEQ79088.1| DNA polymerase I [Staphylococcus warneri L37603] Length = 876 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 92/602 (15%), Positives = 200/602 (33%), Gaps = 75/602 (12%) Query: 14 QPLPKVGVWAYAEQAVIT---LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVA 70 L + + E + + + + ++ SDL+ +L + Sbjct: 312 NDLDEATIHFELEDSNYLKDNILKFGLYTGEHHVVINADEIKQFSDLVNWLENPNTAKTV 371 Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-FSEHLTKMEEGK 129 +++ + L IDI + ++ + + ++ + ++ + +H + Sbjct: 372 YDAKK-TYVVAHRLDIDIQNIQF-DVMLSSYIIDPSRTIDDVNSVVSLYGQHYVQDN--- 426 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 +A + KG P D HV + K +++ + + + L+D E L Sbjct: 427 --VAIYGKGKKHHIPEDEILNKHVASIIEAVSASKSEMQNQLKEYNQESLLADLELPLAE 484 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + + G D++ + +++ I ++ L ++I + + L + LF Sbjct: 485 ILSEMEEIGIYTDVNDLQHMEKEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETL 543 Query: 250 GIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 + ++ ++ T +L D IL S + L + +S D R+ Sbjct: 544 ELPVIKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISEDNRIH 603 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 A +TGR S QN+P + +R Sbjct: 604 TRFNQTLA-QTGRLSSVDPNLQNIPIR------------------------LEEGRKIRK 638 Query: 367 CIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 S ++ AD + IE RVLA I ++ +AF NG DI+ T K F+ D+V Sbjct: 639 AFKPTSTDSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVGADEVD 698 Query: 426 KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE-------- 473 R K + + Y G ++ + + + + Sbjct: 699 SLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAK 758 Query: 474 -------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 S + ++ A+ + G+A +++K A +Q Sbjct: 759 AQDFVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAM-------VQF 811 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 K++ + + + VP+ + + V ++ S+ L +K + SY Sbjct: 812 NKEVQHTKYHA-KLLLQVHDELIFEVPKDEVESFSQFVEDIMESALELDVP-LKVESSYG 869 Query: 581 NT 582 T Sbjct: 870 AT 871 >gi|326791154|ref|YP_004308975.1| DNA polymerase I [Clostridium lentocellum DSM 5427] gi|326541918|gb|ADZ83777.1| DNA polymerase I [Clostridium lentocellum DSM 5427] Length = 882 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 85/518 (16%), Positives = 164/518 (31%), Gaps = 86/518 (16%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTN 103 WD T+ A + L+++L T + H+S F+ L K LG++ + +A Sbjct: 349 WDLTDTEAK-AVLIEFLESATYQKIVHDSKNFKHELLKVGLGLNGVC----FDTFIAAYL 403 Query: 104 GLPSSLKNACLAL-----------NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 P++ L N L K + K + + I++ A Sbjct: 404 LHPTNKSYDLAELEELFINKQSLMNLENLLGKGKSQKTWLQLEDEERINNLGKRSQLA-- 461 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 L ++ + + + D E L + + G ++D + + E Sbjct: 462 -----LSVTEAMKEALQEQNMTRLFY---DIEMPLIDVLFDMEVEGIKVDPEGLRSYGEE 513 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + L I + + L + LF GI ++ + + Sbjct: 514 LQGLLDTLTTSIYEAAGESF-NINSPKQLGVILFEKLGIPCAKKTKTGYSTAAE--VLEA 570 Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 L D + KL + L ++ ++ T + TGR S Sbjct: 571 LKNDYPIVAQILEYRQYAKLKSTYVDGLLNVLTEQNKIHSTFN-QTITATGRLSSTEPNL 629 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEA 386 QN+P +R + S + D + IE Sbjct: 630 QNIP------------------------VKFEMGKKIRQLFVPSSENHIFLDGDYSQIEL 665 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 RVLA ++G+ IKAF DI+ T ++ F+ P + V+ QR+ K + + Y A Sbjct: 666 RVLAHMSGDPTLIKAFKENIDIHALTASQVFHVPFEDVTSMQRSNAKAVNFGIVYGISAF 725 Query: 447 V----FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481 K + + + + D + + Sbjct: 726 ALSEDLKISQKEAQKYIDGYFEKYPCIKAYLDEIIDFAMQNGYVETLYHRKREIPEILAS 785 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + M++ A+ + GT+ +++K A HQ + + Sbjct: 786 NYNMREFGKRVAMNTPIQGTSADIIKIAMIRVHQKLKE 823 >gi|147678311|ref|YP_001212526.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274408|dbj|BAF60157.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 882 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 98/552 (17%), Positives = 176/552 (31%), Gaps = 99/552 (17%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 AY+ D P K+ + L D + HN E I GI + + Sbjct: 365 AYSLDGPPDKILEI---------LKTICEDGNIKKYCHNGK-ETIRLLHRNGITLR--QL 412 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 +++A P+S ++ L A P Sbjct: 413 AFDTMIAAYLLNPASSNQDLEDISLEH----------LNAVLPGEDRKLPAQAHCIMELA 462 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 Q + +D RL + E L + + G +D + + E + Sbjct: 463 QLLDNKLKLYGQD---------RLF--YEIEIPLAGILAEMEIEGVAVDKKQLEAMSEEL 511 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI 270 ++ +KL ++I +LT + L LF + ++ ++ T +L Sbjct: 512 GRQIEKLADEIYRLTGREF-NINSPKQLGKVLFEDLKLPVIKKTKTGYSTDADVLEELAA 570 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 A IL + + L+ ++ G+L T + TGR S QN Sbjct: 571 AHEAVAKILEYRQMAKLKSTYADGLAALINPETGKLHTTF-HQTVTNTGRLSSSDPNLQN 629 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARV 388 +P + A +R I L+ AD + IE RV Sbjct: 630 IPIR------------------------LEAGRLIRKVFIPGRPENLLLTADYSQIELRV 665 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 LA I+G+ IKAF NGEDI+ T A+ F ++V++E R K + + Y G Sbjct: 666 LAHISGDPALIKAFKNGEDIHTRTAAEIFAVRPEEVTREMRTRAKAVNFGIVYGLSDFGL 725 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HL 483 A+ K ++ + + + E+ + Sbjct: 726 ARDIKVSRQEARRYIENYFARYAGVKDYIERIIREARQKGYVTTLLNRRRYLPDLFSPNR 785 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQ 533 ++ A+ + G+A +++K A H + +LQ+ +L V Sbjct: 786 TIRSFGERTAMNTPIQGSAADIIKLAMVNIHRELAEHGLKAKMILQVHDELIFDAPAVEI 845 Query: 534 EGGSISARRVAN 545 + +R Sbjct: 846 DQLKDLVKRCME 857 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R++G + N +Q + DI+ M N + ++L VHDE++ + P Sbjct: 787 IRSFGERTAMNTPIQGSAADIIKLAMVNIHRELAEHGLKAKMILQVHDELIFDAPAVEID 846 Query: 643 SVGTLCS 649 + L Sbjct: 847 QLKDLVK 853 >gi|283797772|ref|ZP_06346925.1| DNA polymerase I [Clostridium sp. M62/1] gi|291074450|gb|EFE11814.1| DNA polymerase I [Clostridium sp. M62/1] Length = 986 Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats. Identities = 62/367 (16%), Positives = 125/367 (34%), Gaps = 58/367 (15%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + G + + + E + + ++L+++I T + L Sbjct: 589 IEMPLIFSLFHMEQAGICVKREELHDYGEKLRVQIERLEQEIYGETGEHF-NINSPKQLG 647 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297 LF + ++ + + +LA + + + + KL + L+ Sbjct: 648 EILFGKMELPYGKKTKTG--YSTAADVLEKLAPEYPVVQKILDYRQLTKLKSTYADGLAG 705 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + DGR+ GT + TGR S QN+P Sbjct: 706 YIREDGRIHGTFN-QTITATGRLSSTEPNLQNIP------------------------VR 740 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + G V AD + IE RVLA ++G++ I+A+ EDI+ T ++ F Sbjct: 741 MELGREIRRVFVPEEGSVFVDADYSQIELRVLAHMSGDERLIEAYRKAEDIHAITASEVF 800 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + P+++V+ QR K + + Y G ++ + ++ + F Sbjct: 801 HVPLEEVTPLQRRNAKAVNFGIVYGISAFGLSEDLSITRKEALEYINRYFETYPDVKKFL 860 Query: 474 DW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 D + S + + A+ + GTA +++K A Sbjct: 861 DRLVEEGKEKGYVTTMFKRRRPVPELSSKNFMQRSFGERVAMNSPIQGTAADIIKIAMNR 920 Query: 513 KHQGVLQ 519 + + Sbjct: 921 VDNRLRR 927 >gi|254478282|ref|ZP_05091662.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] gi|214035747|gb|EEB76441.1| DNA polymerase I domain protein [Carboxydibrachium pacificum DSM 12653] Length = 635 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 92/537 (17%), Positives = 179/537 (33%), Gaps = 85/537 (15%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A+++D DL + E V+H + ++ GI+ SK Sbjct: 95 IAFSFDGTT-----LYSDVERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSK- 147 Query: 93 WICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ T+++A S + L H +GK Y Sbjct: 148 YLDTAIMAYLLNPSESNYDLERVLKKYLKVDVLSHEEVFGKGKDRRRYEEVSEEVMAEYI 207 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 C R +H+ + ++ K L + E L + +++ G+ +D +++ Sbjct: 208 CGRCSHLFELKDKLMAFIE----EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLDRNVL 260 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 +L E I + ++ + I K + L +LF + ++ ++ T Sbjct: 261 KELSEKIDERISEILDKIYKEAGYQF-NVNSPKQLGEFLFEKLNLPVIKKTKTGYSTDSE 319 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L I+ + + + + R+ + A+ TGR S Sbjct: 320 VLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVAA-TGRISST 378 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382 QN+P +E +R I +V AD + Sbjct: 379 EPNLQNIPVRE------------------------EFGRQIRRAFIPRTKDGYIVSADYS 414 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++ ++ I+AF N EDI++ T ++ F P V+ E R KV+ + Y Sbjct: 415 QIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKVVNFGIIYG 474 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477 G AK K + + + K + + + Sbjct: 475 ISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMNRRRYIPE 534 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 S + + Q A+ + G+A +++K A +Q +LQ+ +L Sbjct: 535 INSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDEL 591 >gi|85709565|ref|ZP_01040630.1| DNA polymerase I [Erythrobacter sp. NAP1] gi|85688275|gb|EAQ28279.1| DNA polymerase I [Erythrobacter sp. NAP1] Length = 946 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 101/593 (17%), Positives = 191/593 (32%), Gaps = 103/593 (17%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAM 53 + +D ET S L V + A A+ + D+P ++ Sbjct: 357 RLVAVDTETSSLDAMEADLVGVSLALAPNDACYIPLAHGGTDMFSDKPEQV----AMEDA 412 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 + L L D++V+ V N ++ + + +GID+ G + Sbjct: 413 LAALKLLLEDDSVLKVFQNGKYDLNVLAR-VGIDVSPIEDTMVMSFDLDAGRGEGMGGGH 471 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 SE + C + P+ EY D + T L Sbjct: 472 GMDELSERHLLHKP--LAFKDVCGTGKKAIPF------GEVPLDRATEYAAEDADVTLRL 523 Query: 174 FKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++ L P E R L + + G ++D + KL E A L+++ Sbjct: 524 YRMLKPRLSEEGGTKIYERVDRPLIPVVAGMEREGIKVDRARLAKLSEEFATTTASLEKE 583 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSNITQLAK 275 I ++ + L LF G + L+++ +A Sbjct: 584 IHEIAGQQF-AVGSPKQLGEILFDKMGFKGGKKGKSGAYSTDQSVLENLAKDEAAKPIAD 642 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 ++ R S + L ++ GR+ + GA +TGR S QN+P + Sbjct: 643 KVLEWR-HLSKLKSTYTDALQAQINPETGRVHTSYSLVGA-QTGRLSSTDPNLQNIPIRT 700 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R + +G L+ AD + IE R+ A +A Sbjct: 701 ------------------------EIGRTIREAFVPEDGNVLLAADYSQIELRLAAHMAD 736 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 D +AFANGEDI+ T + F +V+++ RA K + A+ Y G A + Sbjct: 737 VDTLKEAFANGEDIHARTATEMFG----EVTRDTRARAKTINFAILYGISRWGLAGRLEV 792 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 + + Q + + + S + + Sbjct: 793 EPDEAQDMIDTYFQRFPGIQRYIMETLETVRERGYSETLFGRKTWFPRITSKNQAERQGS 852 Query: 490 PEFAVKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACVVQEG 535 A+ + GT+ +++K+A R + G +++ + + + +G Sbjct: 853 ERAAINAPIQGTSADIIKRAMARMLPALRDEGLGNVRMLLQVHDELVFELPDG 905 >gi|170758638|ref|YP_001788325.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] gi|169405627|gb|ACA54038.1| DNA polymerase I [Clostridium botulinum A3 str. Loch Maree] Length = 875 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 85/565 (15%), Positives = 180/565 (31%), Gaps = 105/565 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58 L + Y E I L + YA + V D + Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCK 375 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + + + +++ R + +K + I LA P + +L Sbjct: 376 EIFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLAS 432 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + F K + +++ E +D + L+K Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVL-EEKIKDQDMEELLYK--- 476 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 E+ L + G+++D D++L+L++ E + +I +++ + Sbjct: 477 ----VEQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L D I + + L Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A+ DG++ + TGR S QN+P + Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T + Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 + F PI++V+ R+ K + + Y G ++ + + + + Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ +S + ++ A+ + G+A +++K A Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 510 WRAKHQG----------VLQLWKDL 524 H+ +LQ+ +L Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDEL 831 >gi|220929491|ref|YP_002506400.1| DNA polymerase I [Clostridium cellulolyticum H10] gi|219999819|gb|ACL76420.1| DNA polymerase I [Clostridium cellulolyticum H10] Length = 896 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 92/534 (17%), Positives = 169/534 (31%), Gaps = 92/534 (17%) Query: 24 YAEQAVITLCAYAWDDE--PVKLW---DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI 78 Y + LC +A ++E P + T + ++L + + + H + Sbjct: 344 YLDD----LCIFACNEEYAPANIIFSEKLTC-ETVVNELREIFESKDIEKYGH----DLK 394 Query: 79 LFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCK 137 K L I + I + +A P+ + SE K I Sbjct: 395 NLYKYLKSHGIELENVIFDTFIAAYILEPTR--STYTISELSEDKLKQSITPVEILYDKH 452 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDL 187 G D + + E C V A L ++L P+ E L Sbjct: 453 GKRLEQGQDVSSS----------EVCAAAVNAIYGLTQKLRPIIRDNGQDELYYKIELPL 502 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + RG+++D++ + + + L+ +I + L + LF Sbjct: 503 VEVLANMELRGFKVDVENLKAYSKELDSRLVILENEIYMQAGETF-NINSPKQLGVILFE 561 Query: 248 ITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGR 304 G+ + ++ T +L + + IL + L + DG+ Sbjct: 562 KLGLPVGKKTKTGYSTSAEVLEQLSYKHEIVERILEYRQLMKLKSTYADGLLSVLEQDGK 621 Query: 305 LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCV 364 + + TGR S QN+P + Sbjct: 622 IHSNFN-QTVTATGRISSTEPNLQNIP------------------------VKLEMGRKI 656 Query: 365 RSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 R I +N L+ AD + IE RVLA I G+ I+AF N EDI+ TT +K F P ++ Sbjct: 657 RKVFIPTNSDYVLLDADYSQIELRVLAHITGDPNMIEAFINNEDIHTTTASKVFGIPPEE 716 Query: 424 VSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE------ 473 VS R+ K + + Y G +K + + + Sbjct: 717 VSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVTKKEARKYIDDYLDKYSKVKEYMSDTVEK 776 Query: 474 ---------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + +S + M+ A+ + G+A +++K + Sbjct: 777 GKEFGFVTTLYNRRRYLPELKSSNFNMRSFGERVAMNTPIQGSAADIIKISMVK 830 >gi|289423054|ref|ZP_06424870.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] gi|289156527|gb|EFD05176.1| DNA-directed DNA polymerase [Peptostreptococcus anaerobius 653-L] Length = 909 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 91/521 (17%), Positives = 180/521 (34%), Gaps = 83/521 (15%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNG 104 +MP +++ + DE + + N + I + +G DI +I S + + Sbjct: 381 ESMPKEIVDLIEDEDIEKIGCNIKSDYINLRPYGIRLGKIGFDISIAEYIIDSKTSTSYD 440 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + + + + + +G D + N + Sbjct: 441 FDV-IASKYIYKKMTSEEDLLGKGAKAKKYEDIEKEDLDKFAIGIMNTLSGVVPKMRQII 499 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D + + L+ D E L + + G +D + +L L K L+ I Sbjct: 500 KDDDMEKLLY-------DVEIPLIEVLGDMEYIGIHVDKKTLDELGVLFNDRIKYLETKI 552 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ + L + LF + ++ ++ + + +L + + + Sbjct: 553 YDISGEKF-NINSPKQLGLILFEKLELPVIKKTKTGYSTNAE--VLEKLRDKHPIIDMIT 609 Query: 285 SGSAILKLN-TLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 ++KL T E +++ DGR+ + A+ TGR S QN+P + Sbjct: 610 DYRTVVKLKSTYVEGINNLINPLDGRIHSSFNQAIAT-TGRISSTDPNMQNIPVRT---- 664 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A G KLV AD + +E RVLA ++G++ Sbjct: 665 --------------------DLGRQLRRVFVAGQGSKLVDADYSQVELRVLADMSGDEDM 704 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+AF G DI+ T ++ F P D+VS E R+ K + + Y G AK + Sbjct: 705 IEAFDRGVDIHRNTASQVFGVPFDEVSAELRSAAKAVNFGIIYGKSDFGLAKDLDISIAK 764 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEF--------------A 493 ++ + F D +++ + PE A Sbjct: 765 AKEYIENYFARFPKIKGFMDHIVSDAEEKGYSTTIFGRRRYIPEIKSSNFVEKNRGIRAA 824 Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 + + G+A +++K A H +LQ+ +L Sbjct: 825 MNAPIQGSAADIIKIAMVNVHNRLEEEGLKSNLILQVHDEL 865 Score = 40.9 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M + G ++L VHDE++ E+P V L Sbjct: 829 IQGSAADIIKIAMVNVHNRLEEEGLKSNLILQVHDELIVESPIEEVERVRVL 880 >gi|94986547|ref|YP_594480.1| DNA polymerase I [Lawsonia intracellularis PHE/MN1-00] gi|94730796|emb|CAJ54158.1| DNA polymerase I-3'-5' exonuclease and polymerase domains [Lawsonia intracellularis PHE/MN1-00] Length = 868 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 87/489 (17%), Positives = 151/489 (30%), Gaps = 116/489 (23%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E L + + G +D + + L E I G + Sbjct: 458 QLLELMDSLELPLIPVLADMEAVGVVLDDQNLKIFLVEVQNSLDHLTETIYHEAGGSF-N 516 Query: 235 SRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 R L LF + + G T + +L + D IL Sbjct: 517 IRSAQQLGDILFNQLELPAAKKTRGGQASTSQEVLEKLSGQHPIIDTILEYRKLEKLRST 576 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L L + DGR+ T A+ TGR S QN+P + Sbjct: 577 YLEPLPRLIGKDGRVHTTFNQL-ATATGRLSSSNPNLQNIPIR----------------- 618 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G +RSC AS G L+ AD + +E RVLA + + + AF G DI+ Sbjct: 619 -------GSLGQRMRSCFTASQGNLLISADYSQVELRVLAHYSKDPTLLTAFLEGADIHT 671 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTS 470 T + + ++V+ ++R K + L Y G + +A L + + ++ Sbjct: 672 RTASLLYEKSQEEVTADERRNAKTINFGLIYGMGPQ---KLAQELNTTLNEAKKFIQ--R 726 Query: 471 TFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 FE + + + ++ E+ + G +L D+ Sbjct: 727 YFEHLQAIKKFYDQVEHSAKEYGYVTTIAG----------------RRRLLPDI------ 764 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 H ++ + + R+ + Sbjct: 765 -----------------------HSENIQLQALARRQAI--------------------- 780 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSV 644 I+Q + DI+ M K ++L VHDE+V E P+ V Sbjct: 781 --------NTIIQGSAADIIKIAMLTVHGDTTLAKMDAQLILQVHDELVVEAPEDNAKEV 832 Query: 645 -GTLCSLMT 652 + LM+ Sbjct: 833 GKRIAMLMS 841 >gi|170754800|ref|YP_001782645.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] gi|169120012|gb|ACA43848.1| DNA polymerase I [Clostridium botulinum B1 str. Okra] Length = 875 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 85/583 (14%), Positives = 184/583 (31%), Gaps = 105/583 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58 L + Y E I L + YA + V D + Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLNNTKEQFIEVCK 375 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + + + +++ R + +K + I LA P + +L Sbjct: 376 EMFEGKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLAS 432 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + F K + +++ E K +++ + L Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E+ L + G+++D D++L+L++ E + +I +++ + Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L D I + + L Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A+ DG++ + TGR S QN+P + Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T + Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 + F PI++V+ R+ K + + Y G ++ + + + + Sbjct: 687 EVFKVPIEEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ +S + ++ A+ + G+A +++K A Sbjct: 747 LYLENIVEEAVEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 H+ +LQ+ +L E ++ Sbjct: 807 MVNVHKKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849 >gi|78213483|ref|YP_382262.1| DNA polymerase I [Synechococcus sp. CC9605] gi|78197942|gb|ABB35707.1| DNA polymerase I [Synechococcus sp. CC9605] Length = 986 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 113/643 (17%), Positives = 201/643 (31%), Gaps = 146/643 (22%) Query: 49 EQSAMPSDL-----LQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + ++P L L L N+ ++R++ + I + + ++L Sbjct: 432 SEDSIPEQLSLETVLTALAPWLASSNHPKTLQNAKYDRLILLRH---GIALEGVVIDTLL 488 Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEG-KALIARFCKGSIDSPPYDCTRANHVQAWQL 158 A L + L L L+ + K + P + Sbjct: 489 ADY--LRDASAKHGLELMAEREFGFQPTSFTDLVGK--KQTFADVPLEPAS--------- 535 Query: 159 FGEYCKRDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLV 206 YC DV TR L +L+PL + E+ L + + G RID+ + Sbjct: 536 --LYCGMDVHVTRRLALLLRHQLETMGPQLLPLLEQVEQPLEPVLARMESTGIRIDVPYL 593 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L E + ++L+ D + L LF G+D Sbjct: 594 QGLSEEMGSTLQQLESDAKAAAGVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGFSTD 652 Query: 267 HSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRW 320 + + +L D + L + KL + L + V + GR+ + TGR Sbjct: 653 ATVLEKLGNDHPVVPLVLDHRVLSKLKSTYIDALPQLVEAETGRVHTDFN-QAVTATGRL 711 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S QN+P + S +R + G L+ AD Sbjct: 712 SSSNPNLQNIPVRT------------------------EYSRRIRKAFLPQEGWTLLSAD 747 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R+L ++GE +A+ G+D++ T + D+VS ++R +GK + + Sbjct: 748 YSQIELRILTHLSGEKVLQEAYRGGDDVHALTARLLLDK--DEVSPDERRLGKTINFGVI 805 Query: 441 YQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIG 500 Y GA+ F A G+ + + + ++Q + A+ + Sbjct: 806 YGMGAQRF---ARETGVSQSEAKEFLVK------YKQRYPKVFAFLELQERLALSRGYVE 856 Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDV 558 T + RR + R + R K + Sbjct: 857 T-----------------------------------ILGRRRPFHFDRNGLGRLLGKDPL 881 Query: 559 HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT 618 I L +RR +Q +R +Q S DI+ M Sbjct: 882 EIDLDVARR-------------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQ 922 Query: 619 KN------GYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654 ++L VHDE+V E PD + + M + Sbjct: 923 DALLRQGLPAQLLLQVHDELVLEVAPDALETTRDLVVRTMEQA 965 >gi|257460112|ref|ZP_05625216.1| DNA polymerase I [Campylobacter gracilis RM3268] gi|257442553|gb|EEV17692.1| DNA polymerase I [Campylobacter gracilis RM3268] Length = 938 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 100/573 (17%), Positives = 189/573 (32%), Gaps = 109/573 (19%) Query: 5 FIDIETRS-PQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 D ET S K+ +++A E+A A+++ P ++ ++A+ S Y Sbjct: 378 SFDTETTSIDSKSAKIVGFSFAFNEERAYYVPLAHSYLGAPAQISSDAAKAAIDSLFRGY 437 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 V N ++ + K I+ P R+ T VLA +++ ++ + Sbjct: 438 -------VVGQNLKYDFEIVKNNFNIE-PPARFADTMVLAWLLDPANAVGMDSISPRYL- 488 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 F + + + D T L+ +L L Sbjct: 489 --------GYETVHFGDVVKKGETFASVELDAATIY------ASEDAWVTLRLYFKLKGL 534 Query: 181 SD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E + + G +ID++++ +L + + L ++I +L Sbjct: 535 LEPALFKLAQELEFPFVRVLWQMQRCGIKIDVEMIKRLIGRNEKSLRALTDEIYELCGEQ 594 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILS-HSNITQLAKDLILNRLA 283 + L LF G+ ++ LK + + H + ++ L +L Sbjct: 595 F-NINSPAQLGAVLFERLGLPAAKRTKTGYSTDESVLKDLTALHPAVGKILDYRELFKLQ 653 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S+ L L++A R+R G + TGR + QN+P + Sbjct: 654 STYCEPLLQLALADA---QNRVRSNFLQTG-TATGRLASKNPNLQNIPAR---------- 699 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 G + VR C +A G L+ D + IE R+LA + + + AF Sbjct: 700 --------------GTFAKNVRDCFLAEGGYSLISLDYSQIELRLLAHFSRDPALLAAFR 745 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDL 459 EDI+ T F R I K + L Y GA + + Sbjct: 746 ADEDIHARTAISIFGDAQ----PAHRTIAKSINFGLIYGMGAGKLSDSLGIARAEAKGYI 801 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + F ++ A + + + Y AV K Sbjct: 802 ERYFAAFSTIKEFLQSIKSDAKADGYVSTLFGRRRYFDFANARNNMVYASYEREAVNTKF 861 Query: 499 IGTACELVKKAWRAKHQ-------GVLQLWKDL 524 G+A +++KKA +LQ+ +L Sbjct: 862 QGSAADIIKKAMVDISPLLNGEARLILQIHDEL 894 >gi|210612532|ref|ZP_03289350.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] gi|210151537|gb|EEA82544.1| hypothetical protein CLONEX_01552 [Clostridium nexile DSM 1787] Length = 872 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 158/502 (31%), Gaps = 72/502 (14%) Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + A + E D+ + Sbjct: 383 LAIADVKNAMQYIPNVNQSVCFDTIVAAYLLNPLKNDYESADIAREYLDILIDDNQIDEA 442 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 ++ + RD E+ + + E L + G ++ + + Sbjct: 443 QKSCYEAYTAYESSKILRDRLKETEMEQLF---DEIEMPLVFTLYDMEQNGVKVAAEALH 499 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 E + Q+ L++DI +LT + L + LF G+ ++ S Sbjct: 500 IYGEQLGQKIVDLEKDIYELTGETF-NINSPKQLGVILFEKLGLPHGKKTKTG--YSTSA 556 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +LA + + + KL + L+ + DGR+ G + TGR S Sbjct: 557 DILDKLAPEYPVVSKILEYRQLTKLKSTYADGLAGYIKDDGRIHGKFN-QTITATGRISS 615 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P +R I +G V AD + Sbjct: 616 TEPNLQNIP------------------------VRMELGRLIRKVFIPEDGYVFVDADYS 651 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA +G++ I A+ DI+ T ++ F+TP ++V+ QR K + + Y Sbjct: 652 QIELRILAHCSGDEQLINAYKEARDIHRITASQVFHTPFEEVTDLQRRNAKAVNFGIVYG 711 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477 G ++ ++ + + S F D + Sbjct: 712 ISSFGLSQDLSITKKEAAQYIESYFETYPSIKGFLDDAVEHAKENGYVTTVFGRRRPVPE 771 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT-E 526 S + + A+ + GTA +++K A ++ VLQ+ +L E Sbjct: 772 LSSSNFMQRSFGERVAMNAPIQGTAADIMKIAMNGVNRRLKENNMRSKLVLQVHDELLIE 831 Query: 527 GFACVVQEGGSISARRVANVPR 548 + +++ I + + N + Sbjct: 832 AYEEELEDVKEILSHEMVNAAK 853 >gi|323464230|gb|ADX76383.1| DNA polymerase I [Staphylococcus pseudintermedius ED99] Length = 875 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 94/563 (16%), Positives = 197/563 (34%), Gaps = 74/563 (13%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 +D E + + + P +L+ +L DET H++ I K++ DI + + Sbjct: 338 YDGEQYVVIPFDKVNEYP-ELVAWLEDETTQKWVHDAKKTYIAMKRS---DIAIENVVFD 393 Query: 97 SVLARTN-GLPSSLKNACLAL-NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 ++LA ++++ + +F + + + ++ + KG P D H+ Sbjct: 394 TMLASYIIDPSRTIEDVQSVMTHFDQTFVQDD-----VSVYGKGKSFHIPEDDILDKHIA 448 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + + + E ++ LS+ E L L+ + G D+D + +++ +I Sbjct: 449 SILDAIHVVQPQMMTILEAHEQTSLLSEIELPLALILSEMEYIGIHTDIDTLKEMETVIQ 508 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271 E +L E I + + L + LF + ++ ++ T +L Sbjct: 509 TELDQLIEQIHEQAGEKF-NINSPKQLGVILFEKLELPVIKKTKTGYSTAVDVLEKLQNA 567 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 D IL S + L + + DGR+ A +TGR S QN+P Sbjct: 568 HPIIDNILTYRTLSKLQSTYVEGLQKVIWDDGRIHTRFNQTLA-QTGRLSSVDPNLQNIP 626 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390 + +R ++ ++ AD + IE RVLA Sbjct: 627 IR------------------------LEEGRKIRKAFKSTHEDYVILAADYSQIELRVLA 662 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 I G+ +AF + ED++ TT K FN +V+ R K + + Y G ++ Sbjct: 663 HITGDPTLQQAFNDNEDVHTTTAMKVFNVAAGEVTSLMRRQAKAVNFGIVYGISDYGLSQ 722 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485 + + + + D S + + Sbjct: 723 SLGITRKEAQRFIDDYLNHFPGVKDYMDNIVQDAKQQGYVETLLKRRRYIPDITSRNFNL 782 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + A+ + G+A +++K A +Q +++ + Q + + Sbjct: 783 RGFAERTAMNSPIQGSAADIIKLAM-------VQFHREVQKTSFKA-QLLLQVHDELIFE 834 Query: 546 VPRLVMRRHKRDVHIVLPSSRRL 568 VP+ + + V ++ + +L Sbjct: 835 VPKDEVDEFGKFVEEIMAHALQL 857 >gi|218886806|ref|YP_002436127.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757760|gb|ACL08659.1| DNA polymerase I [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 872 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 80/380 (21%), Positives = 137/380 (36%), Gaps = 65/380 (17%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + G +DLD + E +L D+ K G + R + L Sbjct: 471 EMPLIPVLADMEAAGIAVDLDAFAAFLREVQGELDRLTRDVYKAAGGEF-NIRSSQQLAE 529 Query: 244 YLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF G+ ++G T + +L + D IL L L V Sbjct: 530 LLFGTLGLPTGGKTKGGQTSTAQDVLEKLSGRHPVVDAILEFRKLEKLRSTYLEPLPRLV 589 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ T A+ TGR S QN+P G Sbjct: 590 DGAGRIHTTFNQL-ATATGRLSSSNPNLQNIP------------------------VRGD 624 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R+C A+ G +LV AD + +E RVLA ++ + + AF G DI+ T + ++ Sbjct: 625 LGRRMRTCFTAAPGLRLVSADYSQVELRVLAHMSQDPTLLAAFREGADIHSRTASLLYDV 684 Query: 420 PIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 D+VS +QR K + L Y G A+ + + ++++ ++ F D Sbjct: 685 AQDQVSTDQRRNAKTINFGLIYGMGPQKLAQELRIPLTEAKAFIERYFSKLQKLREFYDE 744 Query: 476 EQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + + L ++ Q A+ + G+A +++K A A H Sbjct: 745 AETTARELGYVTTMAGRRRLLPEIHSENTQLKSQARRQAINTLIQGSAADIIKLAMLAAH 804 Query: 515 ----------QGVLQLWKDL 524 + +LQ+ +L Sbjct: 805 ADPELRALNARLILQVHDEL 824 >gi|20807355|ref|NP_622526.1| DNA polymerase I [Thermoanaerobacter tengcongensis MB4] gi|20515872|gb|AAM24130.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Thermoanaerobacter tengcongensis MB4] Length = 871 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 92/537 (17%), Positives = 179/537 (33%), Gaps = 85/537 (15%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A+++D DL + E V+H + ++ GI+ SK Sbjct: 331 IAFSFDGTT-----LYSDVERLEDLRKIFEREDAEFVSHEIK-DFLVKLSYKGIECKSK- 383 Query: 93 WICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYD 146 ++ T+++A S + L H +GK Y Sbjct: 384 YLDTAIMAYLLNPSESNYDLERVLKRYLKVDILSHEEVFGKGKDRRRYEEVSEEVMAEYI 443 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 C R +H+ + ++ K L + E L + +++ G+ +D +++ Sbjct: 444 CGRCSHLFELKDKLMAFIE----EMDMKKLL---LEIEMPLVEVLKSMEVDGFTLDRNVL 496 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 +L E I + ++ + I K + L +LF + ++ ++ T Sbjct: 497 KELSEKIDERISEILDKIYKEAGYQF-NVNSPKQLGEFLFEKLNLPVIKKTKTGYSTDSE 555 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L I+ + + + + R+ + A+ TGR S Sbjct: 556 VLEQLTAYNDIVSEIIEYRQLTKLKSTYIEGFLPLMDENDRVHSNFKQMVAA-TGRISST 614 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382 QN+P +E +R I +V AD + Sbjct: 615 EPNLQNIPVRE------------------------EFGRQIRRAFIPRTKDGYIVSADYS 650 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA ++ ++ I+AF N EDI++ T ++ F P V+ E R KV+ + Y Sbjct: 651 QIELRVLAHLSEDEKLIEAFMNNEDIHLRTASEVFKVPPQNVTPEMRRAAKVVNFGIIYG 710 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477 G AK K + + + K + + + Sbjct: 711 ISDYGLAKDLKISRKEAKEYIDNYFEKYKGVKEYIEKVIRFAKENGYVTTIMNRRRYIPE 770 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 S + + Q A+ + G+A +++K A +Q +LQ+ +L Sbjct: 771 INSRNFTQRSQAERLAMNTPIQGSAADIIKMAMVKVYQEFKRLNLKSRLILQVHDEL 827 >gi|297617859|ref|YP_003703018.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] gi|297145696|gb|ADI02453.1| DNA polymerase I [Syntrophothermus lipocalidus DSM 12680] Length = 871 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 75/517 (14%), Positives = 166/517 (32%), Gaps = 90/517 (17%) Query: 38 DDEPVKLWDRTEQS-AMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 + E V +++ + A L +L +E + + HN F ++ K+ + Sbjct: 344 NGEDVYVFEMEQDPRAALEKLRAFLENEEIGKLVHNGKFIEVVLKRY---GLKFDGVRGD 400 Query: 97 SVLARTNGLPSSLKNACLALNF----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 ++L P F KM+ G + H Sbjct: 401 TLLLSYVLDPGFSGETLSEHLFHYLGEVVDEKMDPG--------------LAVRGLKKLH 446 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + G +D+ L+K E L + + G ++D ++ ++ + Sbjct: 447 QVLEEKLGS---QDL---VNLYKV------VELPLSPVLADMEFTGIKVDPRILAEISQE 494 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 +A + I ++ + T L LF G+ V ++ T +L Sbjct: 495 LALRIAEDQARIYQVAGQEF-NINSTRQLGKVLFEDLGLPPVKKTKTGYSTSAEVLEELY 553 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + + I+ + ++T + GR+ + + TGR S Q Sbjct: 554 GSHEIIEHIVEYRTLAKLKSTYVDTFPGYIHPETGRVHTVFK-QAVTATGRLSSVEPNLQ 612 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 N+P + +R + L+ D + I+ R Sbjct: 613 NIPIR------------------------MEEGRRIRKAFVPGDENHILLSCDYSQIDLR 648 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443 LA ++G++ I+ F G DI+ T ++ F P+D+V+ + R K + + Y G Sbjct: 649 SLAHMSGDENLIETFRQGIDIHHRTASEIFKVPLDQVTPDLRRKAKAVNFGIVYGISDFG 708 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------H 482 A+ ++++ + + A + Sbjct: 709 LARGTGVTREEAKAYIERYLDSYPGVRRYMQEVVAMGREKGYVSTVLGRRRYLPDLLSSN 768 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ A+ + GT+ +++K A + ++ + + Sbjct: 769 RTVRSMAERMALNAPIQGTSADIIKLAMLSVYRELKR 805 >gi|322386365|ref|ZP_08059995.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] gi|321269589|gb|EFX52519.1| DNA-directed DNA polymerase I [Streptococcus cristatus ATCC 51100] Length = 880 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 75/505 (14%), Positives = 161/505 (31%), Gaps = 70/505 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++P+ + + LA+ + + + + KG Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILLTDDEV----YGKG 434 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + P H+ + ++ +L L + E+ L + + G Sbjct: 435 AKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + +Q + + L ++I L + L LF G+ L + Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + +LA + I KL + L EA++SDG++ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIASDGKIHTRYV-QD 612 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372 ++TGR S QN+P +R + Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K + + Y G A +Q + + + + Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVE 768 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520 S + +++ A+ + G+A +++K A + + ++ Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 + + V + R++ Sbjct: 829 LLQVHDEIVLEVPNDELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|15838882|ref|NP_299570.1| hypothetical protein XF2291 [Xylella fastidiosa 9a5c] gi|9107455|gb|AAF85090.1|AE004041_2 phage-related protein [Xylella fastidiosa 9a5c] Length = 252 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 94/258 (36%), Positives = 129/258 (50%), Gaps = 13/258 (5%) Query: 424 VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 ++KEQR IGKV ELALGY GG F A+ +DL+ + E E Sbjct: 1 MTKEQRQIGKVQELALGYGGGVGAFAAFAALYHIDLEAMAAQ-AVFPPLLLQEATELLEW 59 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + P F + D+ AC++ K+AWR H + W+ L + + Sbjct: 60 TKANHRPTFDLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQFAVTDAIHHPETTHT--- 115 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRERTYGGKL 597 + ++ + + + LPS R L Y+ + G SY+ T T + R TYGGKL Sbjct: 116 --CCGITVQYRRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRLTTYGGKL 173 Query: 598 TENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSW 657 ENI QA+SRD+L M GY IVLTVHDEI++E D P F+ L +LM P W Sbjct: 174 VENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDHPCFNAAHLAALMATPPPW 233 Query: 658 AKGLPLKAEGYEAKRYRK 675 A+GLPL AEG++ RYRK Sbjct: 234 AEGLPLAAEGFDTYRYRK 251 >gi|292669881|ref|ZP_06603307.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] gi|292648678|gb|EFF66650.1| DNA-directed DNA polymerase I [Selenomonas noxia ATCC 43541] Length = 876 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 94/561 (16%), Positives = 170/561 (30%), Gaps = 79/561 (14%) Query: 50 QSAMPSDLLQYL----RDETVMCVAHNSLFERI--LFKKTLGIDIPSKRWICTSVLARTN 103 P L+ L D + A + F+ + L + + +KR++ + Sbjct: 341 GGTAPFVRLEALALVYEDACRIVRAGTAHFDAVTALLAERPVVLWNAKRYVHA---GLSI 397 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 G + L E + E A C G P D + + Sbjct: 398 GADAFDLELGDYLLHPEESRRDIERTAFA--LC-GDAAEAPADLSDEQRAEREAQLAARL 454 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++A L D E L + + G ++ + + + L E+ Sbjct: 455 HSPLQAALAEAGLLPLYQDVELPLVPVLAAMEQTGIYVNRTALERERAAANARIDALAEE 514 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRL 282 I L + L LF + + T + + +L + Sbjct: 515 IHALAGMEF-NISSPKQLGEVLFERLELAAGTKIKKTKTGYSTNAETLEELRDRHPIVDK 573 Query: 283 ASSGSAILKLN-TLSEAVS-----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL T + + GR+ + TGR S QN+P + Sbjct: 574 VLTYRMWTKLRSTYLDGIGALIRPETGRVYTNFN-QTVTATGRLSSSDPNLQNIPVRT-- 630 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395 VR+ G L+ AD + IE R+LA ++G+ Sbjct: 631 ----------------------EEGRAVRALFEPGEGYDVLLSADYSQIELRILAHMSGD 668 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I AF +G+DI+ T A+ F PID V+ EQR K + + Y G ++ + Sbjct: 669 ATLIDAFRHGQDIHARTAAEVFGVPIDAVTGEQRRRAKAVNFGIVYGLSDYGLSRDLRIP 728 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------------HLWMQDQYPE 491 ++++ + F D A++H +MQ + E Sbjct: 729 RKEAAGYIERYFERYHGVREFLDKTVADAHANGYVTTLYGRRRELSAINSRNYMQRSFAE 788 Query: 492 -FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 A+ + GTA +L+K A H D + + V Sbjct: 789 RMAMNTPIQGTAADLIKIAMIRAH--------DALHAAGVKSRILLQVHDELVLEAAEAE 840 Query: 551 MRRHKRDVHIVLPSSRRLVYS 571 + + + + + L Sbjct: 841 IAQVSGLLRTAMSGAAELAVP 861 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 12/86 (13%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYF 642 +R++ ++ N +Q + D++ M A + I+L VHDE+V E + Sbjct: 783 QRSFAERMAMNTPIQGTAADLIKIAMIRAHDALHAAGVKSRILLQVHDELVLEAAEAE-- 840 Query: 643 SVGTLCSLMTKNPSWAKGL--PLKAE 666 + + L+ S A L PL + Sbjct: 841 -IAQVSGLLRTAMSGAAELAVPLAVD 865 >gi|153813587|ref|ZP_01966255.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] gi|149830332|gb|EDM85424.1| hypothetical protein RUMOBE_04010 [Ruminococcus obeum ATCC 29174] Length = 811 Score = 237 bits (605), Expect = 4e-60, Method: Composition-based stats. Identities = 78/442 (17%), Positives = 151/442 (34%), Gaps = 61/442 (13%) Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 H+ + E++ + E L ++ G R+ + + E Sbjct: 386 HLAYTAYATREPIENALKETEMWNVYR---EIELPLIFTLDSMEKWGIRVKGEELKSYGE 442 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268 + +L++ I + + L + LF GI ++ T IL Sbjct: 443 KLQVRIAELEKLIYEQAGEEF-NINSPKQLGVILFEKMGIPGGRKTKTGYSTAADILEKL 501 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 Q + IL + + LS + +DGR+ T + TGR S Q Sbjct: 502 APEQPIVNDILEYRQLTKLKSTYADGLSAVIEADGRIHSTFN-QTITATGRISSTEPNLQ 560 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R + +G + AD + IE RV Sbjct: 561 NIP------------------------VRMELGRLIRKVFVPEDGYVFLDADYSQIELRV 596 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 LA ++G++ I+A+ EDI+ T ++ F+ P D+V+ QR K + + Y G Sbjct: 597 LAHMSGDEKLIQAYREAEDIHRLTASQVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGL 656 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483 ++ ++++ + F D + +S + Sbjct: 657 SQDLSITRKEAAEYIEKYFETYPKIKGFLDGLVADGKEKGYVSTMLGRRRPIPELKSGNF 716 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR- 542 + A+ + GTA +++K A +Q + + + L V + I ++ Sbjct: 717 MQRSFGERVAMNSPIQGTAADIIKIAMNRVYQRLKE--EGLQSRLVLQVHDELLIETKKE 774 Query: 543 -VANVPRLVMRRHKRDVHIVLP 563 V V R++ K VH+ + Sbjct: 775 EVETVSRILEEEMKGAVHLSVE 796 Score = 44.3 bits (103), Expect = 0.059, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M + + G +VL VHDE++ ET Sbjct: 718 QRSFGERVAMNSPIQGTAADIIKIAMNRVYQRLKEEGLQSRLVLQVHDELLIETKKEEVE 777 Query: 643 SVGTLCS 649 +V + Sbjct: 778 TVSRILE 784 >gi|318042056|ref|ZP_07974012.1| DNA polymerase I [Synechococcus sp. CB0101] Length = 1020 Score = 237 bits (605), Expect = 5e-60, Method: Composition-based stats. Identities = 126/698 (18%), Positives = 217/698 (31%), Gaps = 161/698 (23%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVIT---LCAYAWDDEPVKLWDRTEQ--SAMP- 54 +D ET S P L VGV A+ E + + D + +P Sbjct: 419 ALDTETTSLNPFRAELVGVGV-AWGEGPADLAYIPIGHRVGSSG-ETPDLLSPPPAQLPL 476 Query: 55 SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 +L L N+ ++R++ + +P + + ++LA L + Sbjct: 477 DQVLTALAPWLGSAQHPKALQNAKYDRLILLRH---GLPLEGVVMDTLLADY--LRDANA 531 Query: 111 NACLALNFSEHLTKMEEGKALI----ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 L L + + + + A F I + YC D Sbjct: 532 KHGLELLAQRNFGFLPTSYSELVPKGADFSAVPI----------------EQAALYCGMD 575 Query: 167 VEATREL-------FKRLIP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 V TR L + L P L E L + + G RID + +L + Sbjct: 576 VHVTRRLAPLLRAQLEELGPQLPQLLDRVELPLEPVLALMEATGIRIDTAYLAELSSELG 635 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 Q ++L+ D + L LF G+D + + + +L Sbjct: 636 QTLQRLEADAKAAAGTDFNLA-SPKQLGELLFDTLGLDRKKSRKTKTGWSTDAAVLEKLE 694 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + L + KL + L + GR+ + TGR S Q Sbjct: 695 DAHPVVSLVLEHRTLSKLKSTYVDALPALMEPETGRVHTDFN-QAVTATGRLSSSNPNLQ 753 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + S +R + G +L+ AD + IE R+ Sbjct: 754 NIPIRT------------------------EFSRRIRKAFLPEAGWQLISADYSQIELRI 789 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA ++GE+ ++A+ G+D++ T D+VS ++R +GK + + Y GA+ Sbjct: 790 LAHLSGEEVLVQAYQQGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIYGMGAQ-- 845 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 FA + + T + Sbjct: 846 ------------------------------------------RFARETGVSQTQAKEFLS 863 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARR---VANVPRLVMRRHKRDVHIVLPSS 565 ++ ++ V +L E A +I RR + L K + I L + Sbjct: 864 KYKQRYPKVFAFL-ELQERLALSRGYVETILGRRRPFAFDPSGLGRHLGKDPLEIDLDIA 922 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT----KNG 621 RR +Q +R +Q S DI+ M +G Sbjct: 923 RR-------------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLHHQLAASG 963 Query: 622 YD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 ++L VHDE+V E +V TL M + Sbjct: 964 LPARLLLQVHDELVLEAAPEALEAVRTLTRETMERAVE 1001 >gi|56964474|ref|YP_176205.1| DNA polymerase I [Bacillus clausii KSM-K16] gi|56910717|dbj|BAD65244.1| DNA-directed DNA polymerase I [Bacillus clausii KSM-K16] Length = 877 Score = 237 bits (605), Expect = 5e-60, Method: Composition-based stats. Identities = 81/501 (16%), Positives = 167/501 (33%), Gaps = 66/501 (13%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 TE++ + R + ++ + G+D+ + +A Sbjct: 349 TEKAVKSDAFRAFARSQEKKKWLFDAKRAVVALA-WHGVDLNGVDF--DLQMASYL---- 401 Query: 108 SLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 L + + S+ T+ G + KG+ S P + A H+ K Sbjct: 402 -LDPSLSSHEISDIATRKGTGGVAEDEAVYGKGAKRSLPEEAALAEHLCRKANAMFTLKS 460 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +E ++L L E L ++ + G R+D + + ++ + ++ L++ I Sbjct: 461 TLEDELAQNEQLELLKKLEMPLSVVLGRMEKEGVRVDREQLEEMGKDLSDRLNTLEKAIH 520 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 K + L + LF G+ V ++ T +L T + +L Sbjct: 521 KEAGEPF-NINSPKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLAGTHPIIEHLLLYR 579 Query: 283 ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L + + G++ ++TGR S QN+P + Sbjct: 580 QLGKLYSTYIEGLLKVIDSETGKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------- 630 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R +AS G K+V AD + IE RVLA I+G++ + Sbjct: 631 ----------------LEEGRKIRKAFVASKEGWKIVAADYSQIELRVLAHISGDERMKE 674 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T F+ ++V+ R K + + Y G ++ Sbjct: 675 AFLTGMDIHTKTAMDVFHVKREEVTDLMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAK 734 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + ++ + + + + +S + + A+ Sbjct: 735 DFIDRYLASYPQVKAYMENVVKEAKEKGYVQTLLARRRYLPELKSRNFNQRSFAERTAMN 794 Query: 496 DKLIGTACELVKKAWRAKHQG 516 + GTA +++K+A + Sbjct: 795 TPIQGTAADIIKRAMVKMSEA 815 >gi|300868897|ref|ZP_07113503.1| DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300333114|emb|CBN58695.1| DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 1009 Score = 237 bits (605), Expect = 5e-60, Method: Composition-based stats. Identities = 101/610 (16%), Positives = 202/610 (33%), Gaps = 109/610 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L D N+ F+R++ + GI + + T + + S L Sbjct: 461 EALRPILEDNNYPKALQNAKFDRLIL-RCQGIKLAGVVF-DTMLASYVIDPEGSHNLTAL 518 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLFGEYCK-----RDV 167 + E K+ K+ K + AN+ + + F K ++ Sbjct: 519 CKEYLED-PKLTA-KSYKDLVSKEQTIADLAIPIVANYCGMDVYTTFQLVSKLREKLEEL 576 Query: 168 EATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +A + L L L E+ L + + +G RI+ + + +L + + + + +++ + Sbjct: 577 DAEKPLTASLEQLLIKVEQPLEPVLAQMEYKGIRINTEYLNELSQELENKLQLIEQTAYE 636 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + S L LF +D+ + + +L D + + Sbjct: 637 VAGEEF-SLSSPKQLSKLLFETLKLDIKKSRRIQSGYSTDAAVLEKLQDDHEVVKTILEH 695 Query: 287 SAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL + L + V D GR+ A+ TGR S QN+P + Sbjct: 696 RTLSKLKSTYVDALPQLVRPDTGRVHTDFN-QAATGTGRLSSSNPNLQNIPIRT------ 748 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + G +V AD + IE R+LA + E ++ Sbjct: 749 ------------------EFSRQIRKAFLPKEGWLMVSADYSQIELRILAHLTQEPVLVE 790 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ +D++ T F + V+ ++R +GK + + Y GA Q Sbjct: 791 AYKTNQDVHTVTAKLLFEK--ETVTPDERRLGKTINFGVIYGMGA--------------Q 834 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 +F+++V+ S + E + + + L + + + + + G + Sbjct: 835 RFARSVEGVSPTQAKLFIERFNQRYSRVF------EYLNRVKKDAIAQGYVSTILGRRRY 888 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 +K V + DV + ++ + + Sbjct: 889 FK----------------------FEGESVRKLKDSDVQDINLATLKNI----------- 915 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDIVLTVHDEIVSET 636 +QL+R +Q S DI+ M ++L VHDE+V E Sbjct: 916 GQNDAQLLRAAANAP------IQGSSADIIKVAMVKLHDILKDRQARLLLQVHDELVLEV 969 Query: 637 PDTPYFSVGT 646 P + + Sbjct: 970 PPDEWEELQH 979 >gi|94971505|ref|YP_593553.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] gi|94553555|gb|ABF43479.1| DNA polymerase I [Candidatus Koribacter versatilis Ellin345] Length = 929 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 76/496 (15%), Positives = 152/496 (30%), Gaps = 88/496 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + + L D TV H++ G+ + S T + L Sbjct: 431 EVVRRALADPTVPKAVHDAK-----AAMHAGLPLESVE-HDTMLYEYL------LDPTYT 478 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + ++ R + P + H +L + +++ Sbjct: 479 TYRLPD---------VVLRRLNLKLAGTLP-EAADMTHRLTTKLHKLVEDGGL---MKVY 525 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + D +R L + + G ++D D++ ++ + ++ L I L+ + Sbjct: 526 E------DIDRPLVTVLYAMEAAGVKLDCDVLAEMSTRLQRDADALARKIYGLSGQEF-N 578 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 L LF + + + LA + + +L KL Sbjct: 579 INSPKQLGDVLFNKLNLPKPVKYGKGKTISTAVDVLEGLAGEHEVPKLVLEYRQFTKLKS 638 Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + GRL T A+ TGR S QN+P + Sbjct: 639 TYVDALPNLCHAGTGRLHTTFA-QAATSTGRLSSVNPNLQNIPIRT-------------- 683 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R+ +A G L+ AD + IE R+LA + + + A+ N DI Sbjct: 684 ----------ELGREIRAAFVAEKGNVLLAADYSQIELRLLAHFSQDRLLVDAYNNDRDI 733 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T ++ F P + E R K + + Y G ++ ++ + + Sbjct: 734 HALTASEVFGVPPMMIDAEHRRRAKAVNFGIVYGISPFGLSQQLGIDTKESKRYIESYFE 793 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A L GTA Sbjct: 794 RYSGVREWLNSVLEQVRKDEKVSTLFGRIRPIPDIHSRNPNLRGFAERTATNTPLQGTAA 853 Query: 504 ELVKKAWRAKHQGVLQ 519 +L+K A H+ +++ Sbjct: 854 DLIKLAMIRIHRDLIE 869 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 603 QAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLCS 649 Q + D++ M ++ ++L VHDE+V E P V L Sbjct: 849 QGTAADLIKLAMIRIHRDLIERKLKTRMLLQVHDELVFEVPQAEVEEVRALVQ 901 >gi|323350933|ref|ZP_08086591.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] gi|322122915|gb|EFX94621.1| DNA-directed DNA polymerase I [Streptococcus sanguinis VMC66] Length = 880 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 73/505 (14%), Positives = 159/505 (31%), Gaps = 70/505 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++P + + LA+ + + + KG Sbjct: 381 VLLSHYGIELPVASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + P H+ + ++ +L L + E+ L + + G Sbjct: 435 AKRALPEKEQLFEHLARKVQILLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + +Q + + L ++I L + L LF G+ L + Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + +LA + I KL + L EA+++DG++ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372 ++TGR S QN+P +R + Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K + + Y G A ++ + + + + Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVE 768 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520 S + +++ A+ + G+A +++K A + + ++ Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 + + V + R++ Sbjct: 829 LLQVHDEIVLEVPADELTAVRQLVK 853 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IKLA--VPLVAD 869 >gi|238927513|ref|ZP_04659273.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] gi|238884795|gb|EEQ48433.1| DNA-directed DNA polymerase [Selenomonas flueggei ATCC 43531] Length = 874 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 72/382 (18%), Positives = 127/382 (33%), Gaps = 58/382 (15%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +E + E L + + G +D + + + + L +I Sbjct: 457 METELAAQGLMQLYRTVELPLVPVLAAMEQTGVYVDRAALERERAAATERINALAREIHT 516 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + L LF G+ + + + + L + + Sbjct: 517 LAGAEF-NISSPKQLGEILFEHLGLGSGKVKKTKTGYSTNAETLEGLRDQHPIIDNVLTY 575 Query: 287 SAILKLN-TLSEAVSS-----DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 KL T + + + GR+ + + TGR S QN+P + Sbjct: 576 RMWTKLRSTYLDGIGALIRPATGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT------ 628 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKI 399 VR+ G L+ AD + IE R+LA ++G+ I Sbjct: 629 ------------------EEGRAVRALFTPGEGYDALLSADYSQIELRILAHMSGDATLI 670 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF +G+DI+ T A+ F P+D V+ EQR K + + Y G A+ Sbjct: 671 DAFRHGQDIHARTAAEVFGVPLDAVTPEQRRRAKAVNFGIVYGLSDFGLARDLGIGRREA 730 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH--------------------HLWMQDQYPE-FAV 494 G + ++ + TF D A++H +MQ + E A+ Sbjct: 731 GGYIDRYFERYHGVRTFLDKIVADAHTNGYVTTLYGRRRALPALASRNYMQRSFAERMAM 790 Query: 495 KDKLIGTACELVKKAWRAKHQG 516 + GTA +L+K A + Sbjct: 791 NTPIQGTAADLIKIAMVRAYDA 812 >gi|255281096|ref|ZP_05345651.1| DNA polymerase I [Bryantella formatexigens DSM 14469] gi|255268544|gb|EET61749.1| DNA polymerase I [Bryantella formatexigens DSM 14469] Length = 880 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 82/473 (17%), Positives = 163/473 (34%), Gaps = 73/473 (15%) Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD-CTRANH 152 I + + P + C + ++ + M +G+A + F K + + Sbjct: 395 IADAAIGAYLLNPLKGQYPCEDI-AKDYASLMIKGRAEL--FGKAPLAKVMEEQPEELAQ 451 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + V + +++ L D E L + + G R++ + E Sbjct: 452 YACYLAYTAKAAMPVILQKLRENQMLELFRDMEMPLVYTLYDMQEVGIRVNAQELKAYGE 511 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + +L+++I + + L + LF + ++ + + Sbjct: 512 ELYVRIVELEQEIYRDAGEEF-NINSPKQLGVILFEKLKLPGAKKTKSGF--STAADVLE 568 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 +LA D + + KL + L+ +++DGR+ GT + TGR S Sbjct: 569 KLAPDYAIVAKILEYRQLAKLKSTYADGLAGFIAADGRIHGTFN-QTITATGRISSTDPN 627 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + +R IA G L+ AD + IE Sbjct: 628 LQNIPVRT------------------------ELGRLLRKVFIAKEGYVLIDADYSQIEL 663 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 RVLA ++G++ I AF + DI+ T ++ F+ P D+V+ QR K + + Y Sbjct: 664 RVLAAMSGDETLIAAFRDNADIHRLTASQVFHIPFDEVTPLQRRNAKAVNFGIVYGISAF 723 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------- 489 G ++ G + ++ Q F D E+ + Sbjct: 724 GLSEDLHISVKEAGEYIDKYFQTYPKVKDFLDNAVKEAKEKGYAETLFHRRRPVPELKSG 783 Query: 490 --------PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 A+ + GTA +++K A ++ +LQ+ +L Sbjct: 784 NFMQRSFGERVAMNSPIQGTAADIIKIAMIRVNERLRAEQFQSRLILQIHDEL 836 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M + ++L +HDE++ E + Sbjct: 787 QRSFGERVAMNSPIQGTAADIIKIAMIRVNERLRAEQFQSRLILQIHDELLIEAEPSEVE 846 Query: 643 SVGTLCSL 650 +V L + Sbjct: 847 AVKELLAQ 854 >gi|269925881|ref|YP_003322504.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] gi|269789541|gb|ACZ41682.1| DNA polymerase I [Thermobaculum terrenum ATCC BAA-798] Length = 930 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 99/541 (18%), Positives = 174/541 (32%), Gaps = 97/541 (17%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + +AHN+ F+ + K GI + + TS+ A S A Sbjct: 392 LLEGGPKKIAHNAKFDYMALYKH-GIRVSPL-YFDTSIAAFLLNETSVGLKDLAATRLGI 449 Query: 121 HLTKM----EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 +T + +GK + Y C A+ ++LF K R+L Sbjct: 450 QMTTIDSLIGKGKNQKTMLEVSVDECARYACADADMT--FRLFTMLEKE--IVERKLQDL 505 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E L + + G ID D + L + ++ + ++ I ++ + + Sbjct: 506 FYTL---EMPLVPVLADMEMTGVAIDADALKSLSTKLYEQIRDIESQIYEIAGYEF-NLK 561 Query: 237 QTYALRMYLFLITGID---LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 L +LF G+ T + L + DLIL+ + ++ Sbjct: 562 SPQQLSKFLFQDLGLKGIRKTSKGYSTDAATLEALSGQHPVIDLILSYRQLTKLKDTYVD 621 Query: 294 TLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L VS S GRL A TGR + QN+P + Sbjct: 622 ALPLMVSRSTGRLHTNFSQTSAV-TGRLASSDPNLQNIPIRS------------------ 662 Query: 353 IADPLGLASDCVRSCIIAS----------NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR +A L+ AD + IE RVLA + E +AF Sbjct: 663 ------SLGKEVRKAFVAGSPEKNNAIFDEPSVLLSADYSQIELRVLAHVTDEPKLKEAF 716 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLD 458 + DI+ T ++ F PI+ V R +GK + + Y A+ L Sbjct: 717 SRDIDIHALTASRLFGVPIESVDDNMRRMGKTINFGIIYGMSGFRLARDTGLEQREANLF 776 Query: 459 LQQFSQNVKSTSTFEDWEQAESH-------HLWMQDQYPEF--------------AVKDK 497 ++++ + + E+ L + P+ A+ Sbjct: 777 VKRYMDQFPRVKAYFEQLIKEAEKKGYVETPLGRRRYLPDITSSNPQRREAARRAAINMP 836 Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKD---------LTEGFACVVQEGGSI 538 + G A +++K+A H +LQ+ + L +V+E + Sbjct: 837 IQGMAADIIKQAMIDVHSALEREGIKAKMILQVHDELLFEVAESQLDRAAEVIVREMSTA 896 Query: 539 S 539 Sbjct: 897 F 897 Score = 40.5 bits (93), Expect = 0.90, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q ++ DI+ + M + ++L VHDE++ E ++ + M+ Sbjct: 837 IQGMAADIIKQAMIDVHSALEREGIKAKMILQVHDELLFEVAESQLDRAAEVIVREMSTA 896 >gi|330813285|ref|YP_004357524.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] gi|327486380|gb|AEA80785.1| DNA polymerase I [Candidatus Pelagibacter sp. IMCC9063] Length = 939 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 102/569 (17%), Positives = 188/569 (33%), Gaps = 108/569 (18%) Query: 5 FIDIETRS----PQPLPKVGV-WAYAEQAVITLCAYAWDDEP-----VKLWDRTEQSAMP 54 ID ET S L + + + E I + +P +KL D Sbjct: 358 AIDTETNSLDTMVANLVGISLSYRPGEAFYI-PIGHQNKSDPSIKKQLKLKDVL------ 410 Query: 55 SDLLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 S + YL D TV V N ++ RI K GI + S + G + Sbjct: 411 SVIKPYLEDPTVKKVGQNIKYDYRIFLKH--GIQMNSIEDTMLMSYSLDAGKNRHGMDLL 468 Query: 114 LALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 L+ + ++ GK+ + F I + +Y D + Sbjct: 469 SELHLNHKTISFKDVAGIGKSQVT-FDFVDI----------------EQAKDYACEDADI 511 Query: 170 TRELFKR----------LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T L+K L + E+ L + ++ + G +ID +++ KL + E + Sbjct: 512 TLRLYKMFEKRLFNENVLGVYDNLEKPLIKILSSVENNGIKIDKNILEKLSKKFEIEIQN 571 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-LI 278 L++ I K+ + L ++ I ++ + + + LA Sbjct: 572 LEKKIFKIAKEEF-NIGSPKQLGDVIYEKLKIAGSKKTKKG-NFATNVAVLEDLASQGHE 629 Query: 279 LNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L + KL +TL +++ + T A+ TGR + QN+P Sbjct: 630 FPKLVLNWRQKSKLKNTYTDTLPTYINAKSKRVHTSFLLAATTTGRLASANPNLQNIP-- 687 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 + +RS ++ KL+ AD + IE R+LA + Sbjct: 688 ----------------------IKNIEGKEIRSAFVSDKNSKLISADYSQIEMRILAHMG 725 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 KAF N EDI+ T ++ F+ + KV ++ R K + + Y G AK Sbjct: 726 DVKELKKAFLNKEDIHTLTASQIFDVSLKKVDEDMRRKAKAINFGIIYGISSYGLAKQIS 785 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 S L+ + F + + + ++ Sbjct: 786 VSNSEAENFLKSYFGKFPEIRDFMNENITFCRKNGYVKTLFDRKCHFPNINDKNHTLRTF 845 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + + GTA +L++ A + + Sbjct: 846 QERACINAPIQGTAADLLRLAMIQIDKKI 874 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q + D+L M K +++ VHDE++ E + SV + M Sbjct: 855 IQGTAADLLRLAMIQIDKKISAKEIPASLLIQVHDELLLECKEKDVSSVQQKIAHEM 911 >gi|302390192|ref|YP_003826013.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] gi|302200820|gb|ADL08390.1| DNA polymerase I [Thermosediminibacter oceani DSM 16646] Length = 864 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 163/493 (33%), Gaps = 92/493 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 SDL L D + + H+ + R + K +G+D + ++LA PS + Sbjct: 363 SDLKAVLADPGITKIIHDGKYARTVLAK-IGMDFV---YNFDTMLAAYLLDPSKPRYDLE 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 ++ F ++ KG+ D + + C A ELF Sbjct: 419 SVVFDNLGVEL-----------KGTEDPGRRVAYLIPLKEIMSEKLKSC-----AMEELF 462 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 E L + + G ++D + + L ++ ++L +I +L + Sbjct: 463 ------FGVEMPLSFVLSDMEMTGIKVDPEKLESLSREFGEKLEELTGEIYRLAGVEF-N 515 Query: 235 SRQTYALRMYLFLITGIDLVDMSEG---TLKSILS-----HSNITQLAKDLILNRLASSG 286 L LF + ++ + T +L H + ++ + L ++ S+ Sbjct: 516 INSPKQLGEVLFEKLNLPVIKKKKSGYSTDAEVLEKLKNAHPVVEKILEYRFLMKMKSTY 575 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + + L V R+ + TGR S QN+P Sbjct: 576 A-----DGLLALVDKSTYRIHSNFN-QTITATGRISSTEPNLQNIP-------------- 615 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R +A L+ D + IE RVLA ++G++ I+AF Sbjct: 616 ----------VKTDIGRKIRGVFVAESPEHVLLSGDYSQIELRVLAHLSGDEGLIEAFIK 665 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 GEDI+ T ++ F P ++V+ R K + + Y G A+ + ++ Sbjct: 666 GEDIHTRTASEVFGVPPEQVTPLLRDRAKAVNFGIIYGISDYGLAQNLGISTAEAREYIE 725 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + + + S + ++ A+ + Sbjct: 726 NYLNRYPKVRDYIRETIRNARMSGYVTTILNRRRYIPEINSRNYNLRSFAERVAMNTPIQ 785 Query: 500 GTACELVKKAWRA 512 G+A +++K A Sbjct: 786 GSAADIIKVAMVK 798 >gi|226322349|ref|ZP_03797867.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] gi|225209271|gb|EEG91625.1| hypothetical protein COPCOM_00110 [Coprococcus comes ATCC 27758] Length = 882 Score = 237 bits (604), Expect = 6e-60, Method: Composition-based stats. Identities = 88/527 (16%), Positives = 177/527 (33%), Gaps = 80/527 (15%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 +AE A I ++ E + +M +LL+ L V A + Sbjct: 344 FAENAEIGGIGISFGKEKIYCIPAGNGYSM-EELLEALV--HVAKHA----------GRF 390 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 + D+ S L GL + + C + +L + + + Sbjct: 391 VVFDLKSS-------LPYLKGLEGAAEEKCFDSIVAAYLLNPLKNDYGFEDVAQEHLGLM 443 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRID 202 T + ++ + + +V + + + L ++ E L + G R++ Sbjct: 444 IDPKTELEKMVCYEAYAAFASSEVLEEKLKKEEMWKLFTEIEMPLVFTLFHMEQNGVRVE 503 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + + E + + +L+++I +L + L + LF + ++ Sbjct: 504 AEELKSYGEQLGGKIVQLEKEIYELAGEEF-NINSPKQLGVVLFEHLSLPNGKKTKTG-- 560 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASR 316 + + +LA D + + KL + L+ + D R+ G + Sbjct: 561 YSTAADVLDKLAPDYPIVAKILEYRQLAKLKSTYADGLAVFIHEDDHRIHGKFN-QTVTA 619 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + +R + G Sbjct: 620 TGRISSTEPNLQNIPAR------------------------VELGRLIRKVFVPEEGYVF 655 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V AD + IE RVLA +G+ I+A+ +DI+ T ++ F+TP D+V+ QR K + Sbjct: 656 VDADYSQIELRVLAHCSGDAALIEAYREAKDIHRITASQVFHTPFDEVTDLQRRNAKAVN 715 Query: 437 LALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------- 483 + Y G ++ + ++ + F D A + Sbjct: 716 FGIVYGISSFGLSQDLSITRKEAAEYIDRYFETYPGIKKFLDDAVAHAKEQGYVVTLFGR 775 Query: 484 -----------WMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQGVL 518 +MQ Q+ A+ + GTA +++K A A + + Sbjct: 776 RRPVPELSSSNFMQRQFGERVAMNSPIQGTAADIMKIAMIAVDKELR 822 >gi|296282016|ref|ZP_06860014.1| DNA polymerase I [Citromicrobium bathyomarinum JL354] Length = 955 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 93/530 (17%), Positives = 168/530 (31%), Gaps = 85/530 (16%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + L L + V+ V N ++ + + GI + T +++ S Sbjct: 413 ETEVALAKLKPLLESDAVVKVGQNIKYDLNVLARH-GIAVAP--IEDTMIVSFALDAGRS 469 Query: 109 LKNACLALNFSEHLT-KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 E + C + P+ + EY D Sbjct: 470 QDGIGGGHGMDELAQRHLGHTCLTFKEICGTGKKAIPFGEVPID------RATEYAAEDA 523 Query: 168 EATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + T L+ L P E R L + + G ++D + L E A+E Sbjct: 524 DVTSRLYTHLKPRLAVEGGTRIYERVDRPLIPVVAGMERHGIKVDRQQLAALSERFARET 583 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNIT-- 271 +L+ +I ++ L LF G T +S+L + T Sbjct: 584 ARLEGEIHEIAGQEFT-VGSPKQLGDILFDKMGYKGGKKGKSGQYSTDQSVLEKLDATGA 642 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 +A ++ R + + L +A++ R+ + GA +TGR S QN+ Sbjct: 643 PIATKVLEWRQ-LAKLKSTYTDALQQAINPKTNRVHTSYSLVGA-QTGRLSSTDPNLQNI 700 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + +R +A G L+ AD + IE R+ A Sbjct: 701 PIRT------------------------EIGREIRQAFVADEGNVLLAADYSQIELRLAA 736 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 +A +AFA GEDI+ T + F V ++ RA K + A+ Y G A Sbjct: 737 HMADVAPLREAFAAGEDIHARTAQEMFG----SVDRDTRARAKTINFAILYGISRWGLAG 792 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWM 485 A + + + + + S + Sbjct: 793 RLGIEADEAQDLIDIYFARFPGIQRYIVNTMETVRECGYSQTLFGRKTWFPRINSKNQAE 852 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ--LWKDLTEGFACVVQ 533 + AV + GT+ +++K+A + + L D +G ++Q Sbjct: 853 RQGSERAAVNAPIQGTSADIIKRAMARMGPALAEAGLKPDAPDGVRMLLQ 902 >gi|294053806|ref|YP_003547464.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] gi|293613139|gb|ADE53294.1| DNA polymerase I [Coraliomargarita akajimensis DSM 45221] Length = 930 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 84/546 (15%), Positives = 171/546 (31%), Gaps = 92/546 (16%) Query: 55 SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSL 109 S+ L LR D ++ + HN F+ + P ++LA P Sbjct: 399 SEALDALRPLFADNSITKIGHNLKFDLAILAAQ---SCPVDGPCYDTMLAHALIEPEQRH 455 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 LA ++ + + + P D + + Q +Y D + Sbjct: 456 NLDTLAEDYLRY------STIRFSELMPDAKKGSPLDYSSVDP----QALADYATEDADV 505 Query: 170 TRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 T +L++ P + E L + + G R+ + + + ++ + Sbjct: 506 TLQLWECFKPKLEESGQASIFYEIETPLLPVLVAMESEGIRLCTETLEETGRVLEGQIAT 565 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-- 277 L + + + L LF + T + + ++ LA Sbjct: 566 LKDAVYAAAGREF-NLNSPKQLGEVLFNELKLVDKPKKTKTGQFATNEQVLSSLAPKHPI 624 Query: 278 ---ILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L S ++ L AV GR+ + TGR S QN+P + Sbjct: 625 VADLLEYRQLSKLKSTYIDALPNAVDPVSGRVHTHYG-QVQTATGRLSSNDPNLQNIPVR 683 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R + G L+ AD + IE R+LA + Sbjct: 684 S------------------------AQGREIRKAFVPREGWTLLAADYSQIELRILAALT 719 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA-----KVF 448 ++ + AF G DI+ T AK F D VS++QR+ K++ + Y A ++ Sbjct: 720 ADEGLLTAFREGRDIHTATAAKIFEVDADTVSRDQRSTAKMVNFGIPYGISAFGLAQRLG 779 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487 + + + + +Q + + ++ Sbjct: 780 TVSRTEAQNIIDNYFAQFPGIPGYMQAQQESARAKGYVATVCGRRRYLRDINSGNGTIRA 839 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K A H ++ ++ + + + G + R Sbjct: 840 AAERNAINMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPGEESALR 899 Query: 542 RVANVP 547 ++ Sbjct: 900 QLVTGG 905 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 8/119 (6%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS-DVKGDCSYLNTATSQLMRERTYGGK 596 A+ + + + S+R Y V G YL S R + Sbjct: 784 TEAQNIIDNYFAQFPGIPGYMQAQQESARAKGYVATVCGRRRYLRDINSGNGTIRAAAER 843 Query: 597 LTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC 648 N+ +Q + D++ M D ++L VHDE++ + ++ L Sbjct: 844 NAINMPIQGTAADMIKLAMIRVHHAIIDAGLKSRMLLQVHDELIFDLAPGEESALRQLV 902 >gi|291535124|emb|CBL08236.1| DNA polymerase I [Roseburia intestinalis M50/1] Length = 926 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 64/369 (17%), Positives = 133/369 (36%), Gaps = 58/369 (15%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ++ E L + + G + + + + +A +L++ I + + Sbjct: 527 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQ 585 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295 L + LF + ++ + + +LA + + + KL + L Sbjct: 586 LGVILFEKLSMPYGKKTKTG--YSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGL 643 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++ DGR+ + + TGR S QN+P + Sbjct: 644 VNYIAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPMR---------------------- 680 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ Sbjct: 681 --IELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQ 738 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+ P D+V+ QR K + + Y G ++ ++++ + T Sbjct: 739 VFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKT 798 Query: 472 FEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAW 510 F D AE+ +MQ + A+ + GTA +++K A Sbjct: 799 FLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 858 Query: 511 RAKHQGVLQ 519 H +L+ Sbjct: 859 IRVHDRLLK 867 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M ++LTVHDE++ ET Sbjct: 833 QRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEED 892 Query: 643 SVGTLCS 649 +V + Sbjct: 893 AVRKILE 899 >gi|325689238|gb|EGD31244.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK115] Length = 880 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 73/505 (14%), Positives = 160/505 (31%), Gaps = 70/505 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++P+ + + LA+ + + + KG Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + P H+ + ++ +L L + E+ L + + G Sbjct: 435 AKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHNQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + +Q + + L ++I L + L LF G+ L + Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + +LA + I KL + L EA+++DG++ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372 ++TGR S QN+P +R + Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K + + Y G A ++ + + + + Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVE 768 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520 S + +++ A+ + G+A +++K A + + ++ Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTENNFKSRM 828 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 + + V + R++ Sbjct: 829 LLQVHDEIVLEVPNDELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTENNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|147678493|ref|YP_001212708.1| DNA polymerase I [Pelotomaculum thermopropionicum SI] gi|146274590|dbj|BAF60339.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Pelotomaculum thermopropionicum SI] Length = 751 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 110/616 (17%), Positives = 215/616 (34%), Gaps = 103/616 (16%) Query: 57 LLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L +YL D TV V HN+ F+ +L + + + + + + N +LKN Sbjct: 191 LKRYLTDPTVGKVLHNAKFDIHMLLRHGMRMRGLAHDTMIAMKILNENEPSVALKNLAT- 249 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYD-----CTRANHVQAWQLFGEYCKRDVEAT 170 + + E F K P D + H+ W+L+ + + Sbjct: 250 -RYGKFFGFDGESHTFEDLFGKACFADVPLDMALIYAAKDTHL-TWELYK-WQMEHLTKR 306 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +L K L E L + + G+ +D + E + E ++++ +V Sbjct: 307 EDLLKLYREL---ENPLVDICVEMEQTGFAVDTAFAQEYGEELKGELAEVEKTLVAHFGE 363 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS----HSNITQLAKDLILNRLASSG 286 I + L L+ G+ +K++ H I L K L +L + Sbjct: 364 I--NFNSPAQLAEVLYDRLGLPQGKERSTDVKTLKGLKGRHPGIEPLLKYRELTKLLGTY 421 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + +DGR+ G+ A+ TGR++ QNLP Sbjct: 422 -----VEALPHQLKADGRIHGSFN-QVATVTGRFASREPNLQNLP--------------- 460 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 R I+A G L+ D + IE R+LA ++G+ + + GE Sbjct: 461 ---------------PRARRLIVAPKGWLLLGIDFSQIEPRILAHMSGDPHFREPYLKGE 505 Query: 407 DIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ 464 D+Y T A+ F P+ + + R + K+ LA+ Y T++ G+ +++ + Sbjct: 506 DLYSTLAARVFKVPLSECGDGSKYRKMMKIGLLAVMYGTS---MFTLSEQLGISVEEAHR 562 Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL 524 ++ +++ + +++D + EF K++ + T ++ + Q ++ Sbjct: 563 FIEGF-----YDEYPDVYAFIKDTW-EFVKKNEYVATLYGRKRRFPGHREQAIVY----- 611 Query: 525 TEGFACVVQEGGSISARRVANVPR-LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + + R + + + K Sbjct: 612 ---------DQLAAKICKALGTERVPLDFWSNKGI--------------PKDLKRKFGAV 648 Query: 584 TSQLMRERTYGGKLTENIVQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDT 639 ++ R R +Q + DI+ + N G+ I TVHDE + DT Sbjct: 649 KGEVERVRRMA---VNARIQGTAADIMKRALLNLYEYTRARGWKINGTVHDEALLLVRDT 705 Query: 640 PYF-SVGTLCSLMTKN 654 V L + M + Sbjct: 706 ITLAEVEELEACMVRA 721 >gi|331000437|ref|ZP_08324112.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] gi|329571769|gb|EGG53449.1| DNA-directed DNA polymerase [Parasutterella excrementihominis YIT 11859] Length = 950 Score = 236 bits (603), Expect = 6e-60, Method: Composition-based stats. Identities = 87/411 (21%), Positives = 156/411 (37%), Gaps = 76/411 (18%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF + D + ++++ D E L + + G ID L+ + + + Sbjct: 529 RLFKKALSDDAKLE-KIYR------DIEMPLSDVLFKMEQNGVLIDTKLLDQQTAQLNTK 581 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-MSEGTLKS--ILSHSNITQL 273 ++L+E ++ + S L LF G+ L + T+ S +++L Sbjct: 582 ARELEEQAFEVAGENFKLS-SPKQLGEILFDKMGVVLEGAKPKKTISGNYSTSEEVLSEL 640 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 A++ L ++A I KL L + V DGR+ T + + TGR S Sbjct: 641 AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFE-QAVAVTGRLSSTNPNL 699 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + VR I+++G KL+ AD + IE R Sbjct: 700 QNIPIRT------------------------EEGRKVREAFISASGCKLISADYSQIELR 735 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444 ++A ++ + ++AF N EDI+ T A+ F DKV+ R I KV+ L Y Sbjct: 736 IMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFG 795 Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQY--- 489 AK + +F + + +A + LW+ + + Sbjct: 796 LAKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHAGG 855 Query: 490 ------PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + GTA +L+K + A K + +LQ+ +L Sbjct: 856 ARRAAAERAAINAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDEL 906 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + D++ M + G ++L +HDE++ E P+ V L +M Sbjct: 871 QGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIM 926 >gi|1097211|prf||2113329A DNA polymerase Length = 834 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 70/377 (18%), Positives = 129/377 (34%), Gaps = 57/377 (15%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K L + E+ L + + G R D+ + L +A+E ++L+E++ +L + Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 L LF + + ++ T K S + + L + + + KL Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545 Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L V GRL A+ TGR S QN+P + Sbjct: 546 TYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A G LV D + IE RVLA ++G++ I+ F G+DI Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464 + T + F P + V R K + + Y A + ++++ Q Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQ 700 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + + + E +++ A + GTA Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760 Query: 504 ELVKKAWRAKHQGVLQL 520 +L+K A + ++ Sbjct: 761 DLMKLAMVKLFPRLREM 777 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%) Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555 + G E V R + + + QE VA + R + + Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706 Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + L R+ Y + G Y+ +++ R ++ N+ VQ + D++ Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766 Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 M + G ++L VHDE++ E P V L Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAK 806 >gi|257414061|ref|ZP_04745123.2| DNA polymerase I [Roseburia intestinalis L1-82] gi|257201332|gb|EEU99616.1| DNA polymerase I [Roseburia intestinalis L1-82] Length = 930 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 64/369 (17%), Positives = 133/369 (36%), Gaps = 58/369 (15%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ++ E L + + G + + + + +A +L++ I + + Sbjct: 531 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQ 589 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295 L + LF + ++ + + +LA + + + KL + L Sbjct: 590 LGVILFEKLSMPYGKKTKTG--YSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGL 647 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++ DGR+ + + TGR S QN+P + Sbjct: 648 VNYIAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPMR---------------------- 684 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ Sbjct: 685 --IELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQ 742 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+ P D+V+ QR K + + Y G ++ ++++ + T Sbjct: 743 VFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKT 802 Query: 472 FEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAW 510 F D AE+ +MQ + A+ + GTA +++K A Sbjct: 803 FLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 862 Query: 511 RAKHQGVLQ 519 H +L+ Sbjct: 863 IRVHDRLLK 871 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M ++LTVHDE++ ET Sbjct: 837 QRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEED 896 Query: 643 SVGTLCS 649 +V + Sbjct: 897 AVRKILE 903 >gi|466574|dbj|BAA06033.1| thermostable DNA polymerase I [Thermus thermophilus] gi|6009635|dbj|BAA84999.1| Tth DNA polymerase [Expression vector pLED-HB] Length = 834 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 70/377 (18%), Positives = 129/377 (34%), Gaps = 57/377 (15%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K L + E+ L + + G R D+ + L +A+E ++L+E++ +L + Sbjct: 427 KLLWLYHEVEKPLSRVLAHMEATGVRRDVAYLQALSLELAEEIRRLEEEVFRLAGHPF-N 485 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 L LF + + ++ T K S + + L + + + KL Sbjct: 486 LNSRDQLERVLFDELRLPALGKTQKTGKRSTSAAVLEALREAHPIVEKILQHRELTKLKN 545 Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L V GRL A+ TGR S QN+P + Sbjct: 546 TYVDPLPSLVHPRTGRLHTRFN-QTATATGRLSSSDPNLQNIPVRT-------------- 590 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A G LV D + IE RVLA ++G++ I+ F G+DI Sbjct: 591 ----------PLGQRIRRAFVAEAGWALVALDYSQIELRVLAHLSGDENLIRVFQEGKDI 640 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464 + T + F P + V R K + + Y A + ++++ Q Sbjct: 641 HTQTASWMFGVPPEAVDPLMRRAAKTVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQ 700 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + + + E +++ A + GTA Sbjct: 701 SFPKVRAWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAA 760 Query: 504 ELVKKAWRAKHQGVLQL 520 +L+K A + ++ Sbjct: 761 DLMKLAMVKLFPRLREM 777 Score = 51.7 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 9/160 (5%) Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL--VMRRHK 555 + G E V R + + + QE VA + R + + Sbjct: 648 MFGVPPEAVDPLMRRAAK-TVNFGVLYGMSAHRLSQELAIPYEEAVAFIERYFQSFPKVR 706 Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + L R+ Y + G Y+ +++ R ++ N+ VQ + D++ Sbjct: 707 AWIEKTLEEGRKRGYVETLFGRRRYVPDLNARVKSVREAAERMAFNMPVQGTAADLMKLA 766 Query: 614 M----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 M + G ++L VHDE++ E P V L Sbjct: 767 MVKLFPRLREMGARMLLQVHDELLLEAPQARAEEVAALAK 806 >gi|291539651|emb|CBL12762.1| DNA polymerase I [Roseburia intestinalis XB6B4] Length = 930 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 64/369 (17%), Positives = 133/369 (36%), Gaps = 58/369 (15%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ++ E L + + G + + + + +A +L++ I + + Sbjct: 531 TEIEMPLVFTLADMENEGIIACREALTEYGDKLAVRIAELEKQIYEEAGEEF-NINSPKQ 589 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295 L + LF + ++ + + +LA + + + KL + L Sbjct: 590 LGVILFEKLSMPYGKKTKTG--YSTAADVLDRLAPEYPIVSDILEYRQLTKLKSTYADGL 647 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++ DGR+ + + TGR S QN+P + Sbjct: 648 VNYIAKDGRIHTSFN-QTITATGRLSSTEPNLQNIPMR---------------------- 684 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G + + AD + IE RVLA ++G++ I+A+ +DI+ T ++ Sbjct: 685 --IELGRLIRKAFVPKEGFEFMDADYSQIELRVLAHMSGDEKLIEAYREAQDIHRITASQ 742 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+ P D+V+ QR K + + Y G ++ ++++ + T Sbjct: 743 VFHIPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSISKKEAAEYIERYFETYPKIKT 802 Query: 472 FEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAW 510 F D AE+ +MQ + A+ + GTA +++K A Sbjct: 803 FLDGLVAEAKEKGYVTTMFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGTAADIIKIAM 862 Query: 511 RAKHQGVLQ 519 H +L+ Sbjct: 863 IRVHDRLLK 871 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M ++LTVHDE++ ET Sbjct: 837 QRSFGERVAMNSPIQGTAADIIKIAMIRVHDRLLKENLKSRLILTVHDELLVETAIEEED 896 Query: 643 SVGTLCS 649 +V + Sbjct: 897 AVRKILE 903 >gi|85003083|gb|ABC68603.1| DNA polymerase I [Geobacillus caldoxylosilyticus] Length = 878 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 80/519 (15%), Positives = 174/519 (33%), Gaps = 62/519 (11%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I A A + + RT+ + +L DET + + K GI++ Sbjct: 334 ILGFALANEHG--HFFIRTDTALSSPLFTAWLEDETKKKSVFDGKRAIVALK-WKGIELR 390 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 ++A PS ++ + ++ M KG+ + P + Sbjct: 391 --GIEFDLLIASYLLNPS--QSTEDVASVAKTKQYMAVQSDEAVY-GKGAKQTVPEEKAL 445 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A H+ +++ + ++ +D E L + + G ++D++ + ++ Sbjct: 446 AEHLVRKAAAIRALEKEFIHDLQENEQYALFTDLELPLSSILAEMEFTGVKVDVERLKEM 505 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS 266 E + ++ + ++++I +L + L + LF + ++ ++ T +L Sbjct: 506 GEELTEQLRAVEQEIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLE 564 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + IL+ + L + V D T+ ++TGR S Sbjct: 565 KLAPQHEIVEKILHYRQLGKLQSTYIEGLLKVVHCDTHKVHTIFNQALTQTGRLSSTEPN 624 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385 QN+P + +R + S + AD + IE Sbjct: 625 LQNIPIR------------------------LEEGRKIRQAFVPSKPDWVIFSADYSQIE 660 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA IA ++ I AF + DI+ T F+ D+V+ R K + + Y Sbjct: 661 LRVLAHIANDENLIDAFRHDLDIHTKTAMDIFHVTADEVTPNMRRQAKAVNFGIVYGISD 720 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G ++ ++++ + + + S Sbjct: 721 YGLSQNLNIPRKEAAEFIRRYFEIFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITS 780 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ A+ + G+A +++KKA + Q Sbjct: 781 RNFNLRSFAERTAMNTPIQGSAADIIKKAMIDLADRLKQ 819 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 16/173 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLV 550 + + V R + + G++ D + ++ + RR + V Sbjct: 689 MDIFHVTADEVTPNMRRQAKAVNFGIVYGISDYGLSQNLNIPRKEAAEFIRRYFEIFPGV 748 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + + V + YL TS+ R++ + N +Q + DI Sbjct: 749 KQYMENIVQEAKQKGYVTTLLHRR---RYLPDITSRNFNLRSFAERTAMNTPIQGSAADI 805 Query: 610 LCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 + + M + K ++L VHDE++ E P + + +M Sbjct: 806 IKKAMIDLADRLKQEKLQARMLLQVHDELILEAPKEEVKRLQQIVPEVMENAI 858 >gi|303327432|ref|ZP_07357873.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] gi|302862372|gb|EFL85305.1| DNA polymerase I [Desulfovibrio sp. 3_1_syn3] Length = 922 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 77/372 (20%), Positives = 127/372 (34%), Gaps = 63/372 (16%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 REL+ L E L + + RG ID + E +L ++ Sbjct: 514 RELYNTL------ELPLTPVLAEMEGRGVAIDAAAFQAFLSDVQHELDRLTAEVYAAAGT 567 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASS 285 + R L LF + ++G ++ S + +LA IL Sbjct: 568 TF-NIRSAQQLGDVLFKTLNLPSPRKTKGG-QASTSQQTLEKLAGRHAVVDSILQFRKLE 625 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L+ L V GR+ T A+ TGR S QN+P Sbjct: 626 KMRSTYLDPLPRLVDGQGRIHTTFN-QKATATGRLSSSNPNLQNIP-------------- 670 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 G +R+C IA G+ LV AD + +E RVLA ++ + + AF G Sbjct: 671 ----------VRGPLGKRMRACFIAGPGRTLVSADYSQVELRVLAHMSQDAALLDAFRQG 720 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQ 461 EDI+ T A ++ +VS +QR K + L Y GA+ K + + + Sbjct: 721 EDIHARTAALIYDLQAGEVSPDQRRNAKTINFGLIYGMGAQKLGQELKISTAEAKEFITR 780 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIG 500 + + + F + +A + A+ + G Sbjct: 781 YFERLTGLKAFYENVEATAKRQGYVTTLGGRRRLLPDILSANGQAFALARRQAINTVIQG 840 Query: 501 TACELVKKAWRA 512 +A +++K A A Sbjct: 841 SAADIIKLAMLA 852 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 10/70 (14%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPD-TPYFSVGTLCSL 650 ++Q + DI+ M + ++L VHDE++ ETP+ T + + +L Sbjct: 834 INTVIQGSAADIIKLAMLAVAHDAELRRMDARLLLQVHDELLLETPEATAEAAGARVAAL 893 Query: 651 MTKNPSWAKG 660 M+ A G Sbjct: 894 MSSV---APG 900 >gi|82395938|gb|ABB72056.1| thermostable DNA polymerase I [Geobacillus sp. MKK-2005] Length = 876 Score = 236 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 84/493 (17%), Positives = 168/493 (34%), Gaps = 62/493 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + S L +L DET ++ + K GI++ +LA P+ Sbjct: 348 AEMALADSQFLAWLADETKKKSMFDAKRAAVALK-WKGIELR--GVAFDLLLAAYLLNPA 404 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 A+ + + E + A + KG+ S P + T A H+ +R Sbjct: 405 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 461 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ L E+ L + + G ++D + ++ +A++ + +++ I +L Sbjct: 462 LDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYEL 521 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ T +L + IL+ Sbjct: 522 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 580 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + V D G++ ++TGR S QN+P + Sbjct: 581 GKLQSTYIEGLLKVVHPDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 629 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAF 402 +R + S L+ AD + IE RVLA IA +D I+AF Sbjct: 630 --------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAF 675 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 676 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 735 Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497 ++++ + + + S + ++ A+ Sbjct: 736 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTP 795 Query: 498 LIGTACELVKKAW 510 + G+A +++KKA Sbjct: 796 IQGSAADIIKKAM 808 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 11/137 (8%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A KR + ++ +++ Y YL TS+ R++ + Sbjct: 731 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERT 790 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 N +Q + DI+ + M + ++L VHDE++ E P + L Sbjct: 791 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 850 Query: 650 LMTKNPSWAKGLPLKAE 666 +M + A +PLK + Sbjct: 851 VMEQAV--ALRVPLKVD 865 >gi|253682515|ref|ZP_04863312.1| DNA polymerase I [Clostridium botulinum D str. 1873] gi|253562227|gb|EES91679.1| DNA polymerase I [Clostridium botulinum D str. 1873] Length = 881 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 83/502 (16%), Positives = 176/502 (35%), Gaps = 88/502 (17%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D+ + ++H+ ++ +K DI +K +I + +A PS + + Sbjct: 385 EDKNIKKISHDIKNVYVVLRKY---DIDAKNFIFDTKIASYLLEPSKSDYILREIILEKL 441 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 +++ CK + + + Y K E + L Sbjct: 442 SINIDDSDEE----CKI--------------KETYCIKEIYEKLQKEIKEANMEELF--Y 481 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + ++ G+++D D + ++ E E K L+++I KL + + L Sbjct: 482 NVELPLTKVLASMECEGFKVDKDRLTEIGEKFKAEIKMLEKEIHKLAGEDF-NIKSPKQL 540 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L + I++ + + L Sbjct: 541 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIDYRQITKLDSTYVEGLKHV 600 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ + + TGR S QN+P + Sbjct: 601 IDEDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKH------------------------ 635 Query: 359 LASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +A+N + ++ AD + IE RVLA IA ++ I AF + +DI+ T ++ F Sbjct: 636 EMGREIRKVFVANNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIHTITASEVF 695 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P+++V+ R+ K + + Y GA K + + + + Sbjct: 696 RVPVEEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSRYPNVKKYI 755 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510 D + +S + ++ A+ + G+A +++K A Sbjct: 756 DDIINKSEQDGFVTTIMNRKRYIPEIQSRNRIVRSFGERLAMNTPIQGSAADIIKLAMVH 815 Query: 511 --------RAKHQGVLQLWKDL 524 K +LQ+ +L Sbjct: 816 VYEELIKRNLKSTLILQVHDEL 837 >gi|226310992|ref|YP_002770886.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] gi|226093940|dbj|BAH42382.1| DNA polymerase I [Brevibacillus brevis NBRC 100599] Length = 882 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 83/504 (16%), Positives = 164/504 (32%), Gaps = 81/504 (16%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 WD ++ L ++L D + + + D K LA Sbjct: 354 WDVAKE---WKALCEWLADPAKEKWVFDGKRDTVGLA---WHDFAIKGISFDVYLASYL- 406 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIAR--FCKGSIDSPPYDCTRANHVQA-----WQ 157 L A + + + L + KG+ P + HV WQ Sbjct: 407 ----LNAAESNPTLDSIAAQYAQTRVLSDEEVYGKGAKRLVPEMDVLSEHVAHKAAAIWQ 462 Query: 158 LFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 ++ E E +L L + E L ++ + +G +++ + ++++ E + ++ Sbjct: 463 SVPVLREQLAENEME---KL--LGELEAPLSMVLALMEKQGVKVNSERLVQMGEDLDKKL 517 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 L + I +L G + L LF + ++ ++ S + +LA Sbjct: 518 AGLTDQIYELAGGAF-NINSPKQLGEILFDRLSLPVLKKTK--TGPSTSADVLEKLAPYH 574 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + + + KL L++ + + TL + TGR S QN+P Sbjct: 575 PIIDAILTFRQLGKLRSTYIEGLTKEIHTKTSKVHTLYNQATTATGRLSSTDPNLQNIPI 634 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAW 391 + +R I S G ++ AD + IE R+LA Sbjct: 635 R------------------------MEEGRKIREAFIPSEDGWYMLAADYSQIELRILAH 670 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 I+ ++ I AF G DI+ T F ++V+ R K + + Y G ++ Sbjct: 671 ISQDENLIDAFQKGMDIHTRTAMDVFGVSEEEVTSLMRRQAKAVNFGIVYGISDYGLSQN 730 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 G ++++ + D S + ++ Sbjct: 731 LNITRKEAGDFIERYFDVFSGVKRWMDEIVQQAKADGHVTTLLNRRRYLPDIRSSNFNLR 790 Query: 487 DQYPEFAVKDKLIGTACELVKKAW 510 A+ + GTA +++K A Sbjct: 791 SFAERTAMNTPIQGTAADVIKLAM 814 Score = 41.3 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKN----ATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + D++ M + G ++L VHDE+V E PD + L +M Sbjct: 802 IQGTAADVIKLAMIRMQEALEEKGLASRMLLQVHDELVFEVPDNELEVMRKLVPEVM 858 >gi|88697143|gb|ABD48716.1| thermostable DNA polymerase I [Geobacillus sp. LH8] Length = 876 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 84/493 (17%), Positives = 168/493 (34%), Gaps = 62/493 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + S L +L DET ++ + K GI++ +LA P+ Sbjct: 348 AEMALADSQFLAWLADETKKKSMFDAKRAAVALK-WKGIELR--GVAFDLLLAAYLLNPA 404 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 A+ + + E + A + KG+ S P + T A H+ +R Sbjct: 405 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPS 461 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ L E+ L + + G ++D + ++ +A++ + +++ I +L Sbjct: 462 LDELRSNEQDGLLIKLEQPLATILAEMEFTGIKVDTKRLEQMGSELAEQLRAVEQRIYEL 521 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ T +L + IL+ Sbjct: 522 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 580 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + V D G++ ++TGR S QN+P + Sbjct: 581 GKLQSTYIEGLLKVVHPDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 629 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAF 402 +R + S L+ AD + IE RVLA IA +D I+AF Sbjct: 630 --------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDDNLIEAF 675 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 676 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGVVYGISDYGLAQNLNITRKEAAEF 735 Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497 ++++ + + + S + ++ A+ Sbjct: 736 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTP 795 Query: 498 LIGTACELVKKAW 510 + G+A +++KKA Sbjct: 796 IQGSAADIIKKAM 808 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 11/137 (8%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A KR + ++ +++ Y YL TS+ R++ + Sbjct: 731 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERT 790 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 N +Q + DI+ + M + ++L VHDE++ E P + L Sbjct: 791 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 850 Query: 650 LMTKNPSWAKGLPLKAE 666 +M + A +PLK + Sbjct: 851 VMEQAV--ALRVPLKVD 865 >gi|159903755|ref|YP_001551099.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] gi|159888931|gb|ABX09145.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9211] Length = 985 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 125/697 (17%), Positives = 221/697 (31%), Gaps = 172/697 (24%) Query: 1 MSKLFIDIETRSPQP----LPKVGVWAYAEQAV---ITLCAYAWDD--EPVK------LW 45 + + ID ET S P L +G+ + E+ + +D E L Sbjct: 384 IQPVAIDTETTSLNPFQSELVGIGLC-WGERPEQIAYIPLGHITEDLFEDQSSNLQLPLI 442 Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVL 99 D + L +L V N+ ++R++F + + +D ++C Sbjct: 443 DVIKG------LSPWLGSSEHPKVLQNAKYDRLIFLQYGIPLEGVIMDTLLADYLCDVTH 496 Query: 100 ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 + + + NF+E + K E F SI + Sbjct: 497 RHSLEAMAKREFGFTPTNFNEIVGKDET-------FKNVSISTA---------------- 533 Query: 160 GEYCKRDVEATRELF-----------KRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVL 207 YC DV TR+L+ ++LI L + E+ L + + RG RID+ + Sbjct: 534 SLYCGMDVYLTRKLYFLKKSNLEEMGQKLIELLEKVEQPLEPILADMEARGIRIDIPYLK 593 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 +L + + K +++ K+ S L LF G+D Sbjct: 594 ELSIELNKALKNIEKSAYKIAKTDFNLS-SPKQLGEVLFEQLGLDKKKSRRTKTGWSTDA 652 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWS 321 + + +L D + L + KL L + V + GR+ + TGR S Sbjct: 653 NVLERLQGDNPIVPLVIEHRTLSKLLSTYVEALPQLVEAQTGRVHTDFN-QAVTATGRLS 711 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + S +R + G +L+ AD Sbjct: 712 SSNPNLQNIPIRT------------------------EFSRRIRKAFLPREGWQLLSADY 747 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA ++GE +A+ NG+D++ T + + ++ +R +GK + + Y Sbjct: 748 SQIELRILAHLSGEASLQEAYRNGDDVHALTAKILLDK--ESITSNERRLGKTINFGVIY 805 Query: 442 QGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDK 497 G + F S L ++ + + ++ + + A+ Sbjct: 806 GMGVQRFARSTGVSQSEAKDFLNRYKERYTNVFSYLELQ-------------ERLALSKG 852 Query: 498 LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 + T D L K Sbjct: 853 FVETIL-----------GRRRHFHFDKN----------------------GLGRLLGKNP 879 Query: 558 VHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 + I L +RR +Q +R +Q S DI+ M Sbjct: 880 LEIDLKLARRA-------------GMEAQQLRAAANAP------IQGSSADIIKVAMVKL 920 Query: 618 TKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 K G ++L VHDE+V E T V L Sbjct: 921 DKELKNEGLPANLLLQVHDELVLEVDPTATEQVKALV 957 >gi|325265069|ref|ZP_08131796.1| DNA polymerase I [Clostridium sp. D5] gi|324029759|gb|EGB91047.1| DNA polymerase I [Clostridium sp. D5] Length = 871 Score = 236 bits (603), Expect = 8e-60, Method: Composition-based stats. Identities = 80/512 (15%), Positives = 167/512 (32%), Gaps = 89/512 (17%) Query: 73 SLFERILFKKTLGIDIPSKRWIC-TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131 ++F+ KK L + C +A P + + ++E + Sbjct: 384 AMFD---LKKYLPHVKAPDQEKCFDVTVAAYLLNPLKNNYDYEDVAREQLGLMIDEKADV 440 Query: 132 IARFCKGS-IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 + + C + R K E LF +D E L Sbjct: 441 MTKACYEAYTAFAAVKPLRD-------------KMQAEGMYHLF------TDIEMPLVFT 481 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +++ + + E + +L+++I ++ + L + LF Sbjct: 482 LFDMEQAGIQVEAEALKFYGEQLGGRIVELEKEIYEMAGETF-NINSPKQLGVVLFDHMQ 540 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 + ++ T +L + IL + + L+ + +DGR+ G Sbjct: 541 LPNGKKTKTGYSTAADVLDKLAPDYPVVEKILEYRQLTKLKSTYADGLAVYIGADGRIHG 600 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + TGR S QN+P +R Sbjct: 601 KFN-QTITATGRISSTEPNLQNIP------------------------VRMELGRLIRKV 635 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + G + AD + IE R+LA +G++ I+A+ + DI+ T ++ F+TP ++V++ Sbjct: 636 FVPKEGYVFIDADYSQIELRILAHCSGDEQLIQAYKDARDIHRMTASQVFHTPFEEVTEL 695 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA----- 478 QR K + + Y G ++ ++ + + F D A Sbjct: 696 QRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAQYIENYFETYPGIKRFLDDTVAHAKEE 755 Query: 479 ----------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------ 516 +S + ++ A+ + G+A +++K A ++ Sbjct: 756 GYVVTLFGRRRPVPELKSSNFMQRNFGERVAMNAPIQGSAADIMKIAMIGVNRELKEKGL 815 Query: 517 ----VLQLWKDLT-EGFACVVQEGGSISARRV 543 +LQ+ +L E + E I R++ Sbjct: 816 RSRMILQVHDELLIEAHREEIGEVQEILKRQM 847 >gi|260588620|ref|ZP_05854533.1| DNA polymerase I [Blautia hansenii DSM 20583] gi|260541095|gb|EEX21664.1| DNA polymerase I [Blautia hansenii DSM 20583] Length = 880 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 89/538 (16%), Positives = 173/538 (32%), Gaps = 89/538 (16%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--QYLRDETVMCVAHNSLFERILFKKT 83 E+ I AW +E +++ S +P + YL ++T L + K Sbjct: 329 EKGQILGLGLAWGEEETEVY-----SILPQGFVTEDYLIEKTQEFCQQGKLIASLNIKAM 383 Query: 84 LGI-DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF--CKGSI 140 L D+ S + + LA P T + K + K + Sbjct: 384 LRYMDLKSHNDMFDAGLAAYLLNP-----------LKSEYTYDDIAKEFLGEMFPAKEDL 432 Query: 141 DSPPYDCTRANHVQA----------WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 AN + + +E K L +D E L Sbjct: 433 LGKLSYIKAANEKEEELAKSVCYMAYTALKSRTSLLEALEKENMKELY--TDMEMPLLFT 490 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G ++ + + + E + + L+++I + + L + LF Sbjct: 491 LADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAGEEF-NINSPKQLGVILFEKLE 549 Query: 251 IDLVDMSE---GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 + ++ T +L +L D++ R + + L+ ++ DGR+ Sbjct: 550 LPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQ-LTKLKSTYADGLANYIAEDGRIH 608 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T + TGR S QN+P + +R Sbjct: 609 STFN-QTITATGRISSTEPNLQNIPVRT------------------------ELGRLLRK 643 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 I +G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P D+V+ Sbjct: 644 VFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVTP 703 Query: 427 EQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH 482 QR K + + Y G ++ ++ + Q F D E+ Sbjct: 704 LQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIESYFQTYPKIKGFLDGLVEEAKE 763 Query: 483 LWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +++K A ++ + + Sbjct: 764 KGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVNKRLKE 821 Score = 44.0 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M K +VL VHDE++ ET Sbjct: 787 QRSFGERVAMNSPIQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVE 846 Query: 643 SVGTLCSL 650 V + Sbjct: 847 QVSAILEQ 854 >gi|254780277|ref|YP_003064690.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] gi|254039954|gb|ACT56750.1| DNA polymerase I [Candidatus Liberibacter asiaticus str. psy62] Length = 976 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 100/574 (17%), Positives = 200/574 (34%), Gaps = 101/574 (17%) Query: 46 DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D T ++ + ++L YL+ +E + + HN +++++ + GI + I Sbjct: 438 DSTGKNTLTKEILSYLKKFFENEHFLKIGHNIKYDKLVLHRY-GISMRGFEDIMLMSYVL 496 Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 +G SS A +A + + K K S P D + VQ E Sbjct: 497 DSG-RSSHDIASIAQKWLSYTRK---------EILKSRKSSIPIDKISDSQVQ------E 540 Query: 162 YCKRDVEATRELFKRLIPLSDGERDL---WLLDQ-------TINDRGYRIDLDLVLKLQE 211 + + +L+ L P E+ L LD+ + G +ID DL+ ++ Sbjct: 541 HAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSA 600 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 I++ L+E+I L+ S L LF ++ T + + ++ Sbjct: 601 EISKNLLSLEENIYDLSGEKFNLS-SPKQLGDILFTKLKFPSGAKTK-TGQWKTTAQDLE 658 Query: 272 QL-------AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 Q+ K+++ R S + ++L ++ + T ++ TGR + Sbjct: 659 QINCGDNPIIKNILEWRQLSKIKST-YADSLPNHINKRTQRVHTFYSLASTMTGRLASLE 717 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P + +R I+ KKL+ AD + I Sbjct: 718 PNLQNIPIKT------------------------DLGQKIRRAFISPPTKKLISADYSQI 753 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA IA + F N DI+ A+ F I+KVS + R K + ++ Y Sbjct: 754 ELRILAHIAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGIS 813 Query: 445 ----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479 A + S ++++ + + +++ Sbjct: 814 PFRLATQLRIPRSEAADYIKRYFHRFPGIHEYIEKTKNFVRQNGYVETIFGRRIHYDEIN 873 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 S +++ A+ + G+A ++ ++A + H+ + E + I Sbjct: 874 SPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSL--------EDHKLATKMLLQIH 925 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 V VP + I++ S + + Sbjct: 926 DELVFEVPEEEITTAS---QIIVHSMEKACLPKI 956 >gi|229916392|ref|YP_002885038.1| DNA polymerase I [Exiguobacterium sp. AT1b] gi|229467821|gb|ACQ69593.1| DNA polymerase I [Exiguobacterium sp. AT1b] Length = 864 Score = 236 bits (602), Expect = 8e-60, Method: Composition-based stats. Identities = 94/585 (16%), Positives = 186/585 (31%), Gaps = 119/585 (20%) Query: 2 SKLFIDIE----------TRSPQPLPKVGVWAYAEQAVITL------------------- 32 LF+D++ T S +P+ K AE+ I L Sbjct: 267 KTLFMDLQFKSLIGKLADTSSEEPVEK------AERPTIALVDQDLSRAVLMLEQLHDDY 320 Query: 33 -----CAYAWDDEP-VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 A E V + D T + +++ DET + ++ I K+ + Sbjct: 321 FEEDVIGVAIASERGVTIGDVTLLE--DERVKEWIEDETKTTICLDAKQTIIQLKRH-QL 377 Query: 87 DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + + + +SL + + + GK K ++ + Sbjct: 378 ALRGYEDLLVAGYLLNLSGGTSLSSIAAHFTYPLEEDETVYGKGAK---IKVPEENVFHA 434 Query: 147 CTRANHVQAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + LF E + EL++ L E+ L + + G ++++ Sbjct: 435 HLAEKAYAIYTLFERVVSELKENEQTELYEAL------EKPLVSVLAEMEWAGIHVNVET 488 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLK 262 + ++ + + L+ I +L + L + LF + V ++ T Sbjct: 489 LQHMETDLRERLNALEITIHELAGEPF-NINSPKQLGVVLFEKLSLPPVKKTKTGYSTAA 547 Query: 263 SILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 +L H I ++ L +L S+ + L + V DG++ ++T Sbjct: 548 DVLEKLAPLHPIIEKIMHYRELGKLQSTY-----VEGLQKVVKDDGKIHTRYT-QTLTQT 601 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKL 376 GR S QN+P + +R AS G L Sbjct: 602 GRLSSVNPNLQNIPIR------------------------LEEGRRIRKAFTASEPGWVL 637 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 D + IE R++A ++ ++ + AF + EDI+ +T A F ++V+ R K + Sbjct: 638 YAVDYSQIELRIMAHMSQDEKMMAAFLHDEDIHTSTAANVFKVSAEEVTSLMRRQAKAVN 697 Query: 437 LALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------ 474 + Y G ++ + + + TF D Sbjct: 698 FGIIYGISDYGLSQNLGITRKEAQTFIDTYFEQFPGVKTFMDAAIERAREHGFVETMLKR 757 Query: 475 ---WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 S + ++ A+ + GTA +++KKA Sbjct: 758 RRNIPDIHSRNFNLRGFAERTAINTPIQGTAADIIKKAMIDVDHA 802 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 9/73 (12%) Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P ++ L M + Sbjct: 784 IQGTAADIIKKAMIDVDHALNASKLQSKLLLQVHDELIFEGPTEEMEALEKLVTEAMEQT 843 Query: 655 PSWAKGLPLKAEG 667 + +PL+A+G Sbjct: 844 VT--LDVPLRADG 854 >gi|189346016|ref|YP_001942545.1| DNA polymerase I [Chlorobium limicola DSM 245] gi|189340163|gb|ACD89566.1| DNA polymerase I [Chlorobium limicola DSM 245] Length = 943 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 86/505 (17%), Positives = 162/505 (32%), Gaps = 80/505 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L L + + N ++ ++ K GI + + T + + L Sbjct: 416 ERLKPVLENPDIRKTGQNLKYDLLVLKNY-GISLTPVAF-DTMLASYVLDPEEKHNLDDL 473 Query: 115 ALNFSE------HLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDV 167 A EGK S Y C A+ ++ ++F D Sbjct: 474 AARHLSIRTTTFDELTAGEGKKRTHILDVPSAQLSDYGCQDADIALRLQEVFEAKLLED- 532 Query: 168 EATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +RL+ L E L + + +G ID + K +L+ + L I Sbjct: 533 -------QRLLHLCRTIEFPLVEVLAGMEYQGISIDTAHLEKTADLVNAQIGDLSRKIHA 585 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF G+ ++ + + + +LA + Sbjct: 586 AAGTPF-NLDSPKQLSGILFNTLGLPTKKTTKTGFSTNVE--VLEELAPLHPIIGDLLEY 642 Query: 287 SAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 ++ KL + L + ++ GRL + + + TGR S QN+P + Sbjct: 643 RSLQKLKTTYIDALPKMINPGTGRLHTSFNQH-VTATGRLSSSNPNLQNIPVRT------ 695 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 A +R I S ++ AD + IE R+ A I+G++ I Sbjct: 696 ------------------TAGKEIRRAFIPSNPDNLILSADYSQIELRIAAEISGDEKLI 737 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF N EDI+ T F+T D+++ + R K + + Y G +K S Sbjct: 738 EAFRNREDIHRATAKVIFST--DEITSDMRRKAKEVNFGVLYGIQPYGLSKRLNIPQSEA 795 Query: 456 GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494 ++ ++ S + +Q A+ Sbjct: 796 KAIIETYTTKYPGLFHALLEIIEEGKRKGYVTTLLGRRRYIPDLNSRNGNIQKAAGRAAM 855 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ 519 + GTA +++K A + + + Sbjct: 856 NTPIQGTAADIIKCAMNLCDRQIKK 880 >gi|322388444|ref|ZP_08062047.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] gi|321140757|gb|EFX36259.1| DNA-directed DNA polymerase I [Streptococcus infantis ATCC 700779] Length = 889 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 90/592 (15%), Positives = 195/592 (32%), Gaps = 89/592 (15%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + +L+ ++T + V ++ ++L + G+D+ + Sbjct: 349 FAWSCGD---KLYATDKLELLQDPILKEFLEKTPLKV-YDFKKAKVLLNR-FGLDLQAPA 403 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + S LA+ N +++ + KG + P T H Sbjct: 404 F--DSRLAKYLLSTVENNEISTIANLYGQTYLVDD----ETFYGKGVKKAIPERETFLEH 457 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + VE L ++L L D E+ L L+ + G ++ + + Sbjct: 458 L------VRKVAVLVETEPVLLEKLSENGQLDLLYDMEQPLALVLAKMEIAGIKVKKETL 511 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L++Q +KL ++I +L + L LF G+ + + + Sbjct: 512 LEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGELLFEKLGLPIEYTKKTKTGYSTA 570 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +LA + + I K+ + L + + +DG++ ++TGR S Sbjct: 571 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 629 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 630 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 665 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + + Sbjct: 666 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 725 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474 Y G + + + + + D Sbjct: 726 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 785 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 S + ++ A+ + G+A +++K A + ++ + Sbjct: 786 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVAGRYQ--------TKM 837 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + V VP+ + K+ V + + +L + + + ++ Sbjct: 838 LLQVHDEIVLEVPKSELASIKKLVKQTMEEAIQLSVPLIADENEGVTWYEAK 889 >gi|269302395|gb|ACZ32495.1| DNA polymerase I [Chlamydophila pneumoniae LPCoLN] Length = 870 Score = 236 bits (602), Expect = 9e-60, Method: Composition-based stats. Identities = 99/511 (19%), Positives = 178/511 (34%), Gaps = 86/511 (16%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTNGLPS 107 E + + L + E + +N + GI I + + + G Sbjct: 348 EGTKILPILKDFFLREDLTFYGYNLKRDCHALLNA-GIVIREISYDLALAEHLTNGGGKI 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK--- 164 S ++ + F+E RF K + + + FGE Sbjct: 407 SFQSLLVNHGFTETAH----------RFAKEWGNLGLPIGRLPEQPEQY--FGELVAYLP 454 Query: 165 --RDV---EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 +D E R+ + LSD E L + ++ G +D++ + L+ L E Sbjct: 455 IIKDAILEEINRKNLNHI--LSDIEMPLEKVLVSMERAGVPLDVEELAILEALFETELAV 512 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS-----HSNITQLA 274 L E+I L+ + + L L+ G+ +D ++ T +L H I +L Sbjct: 513 LTEEIYDLSGRPF-NIKSPKQLSDILYNELGLRPIDKAKSTRAEVLEALRSEHPIIEKLL 571 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + +L S+ + L + V S R+ + G + TGR + QN+P + Sbjct: 572 AFRTIEKLLSTY-----VKALPKQVDSHTQRIHPSFDQTG-TVTGRLACRDPNLQNIPIR 625 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLAGIEARVLAWI 392 +R ++ + AD + IE R LA + Sbjct: 626 SER------------------------GILLRKAFRLSEKNSYFLSADYSQIELRFLAHL 661 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 + + AF +GEDI+ T ++ F+ P+++VSKEQR K + + Y G AKV Sbjct: 662 SQDKSLKFAFESGEDIHAFTASQVFHVPLEQVSKEQRMQAKTVNFGIVYGQQAFGLAKVL 721 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAES--------------------HHLWMQDQ 488 K +Q + + F + ++ + Sbjct: 722 KISVGEAQELIQAYFSRYPEIAHFVEETIQQAAKDLRVTTMLGRERIIDSWNEFPGSRAA 781 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 FAV ++ G+A EL+K A Q + Q Sbjct: 782 SGRFAVNTRIQGSAAELIKLAMLDISQAIKQ 812 >gi|156741494|ref|YP_001431623.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] gi|156232822|gb|ABU57605.1| DNA polymerase I [Roseiflexus castenholzii DSM 13941] Length = 972 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 99/512 (19%), Positives = 168/512 (32%), Gaps = 79/512 (15%) Query: 48 TEQS-AMPSD-LLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 T +P D ++ LR D VAHN+ F+ + ++ G+ + + T + A Sbjct: 424 TTGEMQLPRDRVIAALRSFFADPARPKVAHNAKFDIEVLERA-GMPVAGLSF-DTMLAAG 481 Query: 102 TNGLPSSLKNAC-----LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 +LK+ LA + +GK + + Y A+ Sbjct: 482 LLDKRRNLKDLAFYELELAEPLDAIGDLIGKGKNQVTFAEVPIARATRYAAADADMTLRL 541 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 Q E R + ++F RL E L + + G +D+ + L E + +E Sbjct: 542 QPALEAKLRAAGSLADMFYRL------EMPLVPVLVRMEQSGILLDVPYMRALGERMGRE 595 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFL-ITGIDLVDMSEG-TLKSILSHSNITQLA 274 ++++ I + + L LF + + T + L+ + +L Sbjct: 596 LAQIEQQIFAIAGKPF-NINSGDQLSEVLFGPKINLPTTGLERTRTGRYSLTAQALEELQ 654 Query: 275 K-------DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 +LIL S ++ L V+ GR+ GA+ TGR S Sbjct: 655 ASDTTGIIELILRHRRLSKLKSTYVDELPALVNPETGRVHTDYNQLGAA-TGRLSSNSPN 713 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + VR IA+ G L+ AD + IE Sbjct: 714 LQNIPTRT------------------------EEGREVRRGFIAAPGHVLIAADYSQIEL 749 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 RVLA I G+ I+ F G DI+ T A+ F + V K QR I K + + Y Sbjct: 750 RVLAHITGDPNLIQTFIEGRDIHAATAARLFGVGFNAVDKNQRRIAKTVVFGVIYGISPF 809 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------------------ 484 G A+ + + D + Sbjct: 810 GLAQRLGISREQARNLIDSLFNQFPRIRDYIDRTLETGRNEGYVQSLFGRRRPMFDLRTS 869 Query: 485 --MQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + A+ + TA +++K A A Sbjct: 870 GPRRQAAEREAINHPIQSTAADIMKLAMIAVD 901 >gi|28211720|ref|NP_782664.1| DNA polymerase I [Clostridium tetani E88] gi|28204162|gb|AAO36601.1| DNA polymerase I [Clostridium tetani E88] Length = 882 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 64/382 (16%), Positives = 132/382 (34%), Gaps = 65/382 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G+++D +++ + + + +E +K+ ++I +L D + L Sbjct: 483 EVELPLAFVLANMELEGFKVDGEMLENIGKKLQREIEKVQKEIYELADEEF-NVNSPKQL 541 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL---NRLASSGSAILKLNTLSEA 298 LF + ++ ++ + + + +I + + L Sbjct: 542 GKILFEKLDLPVIKKTKTGYSTNAQVLEVLEDKHPIISKIGYYRQLTKLYSTYVEGLKNV 601 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DGR+ + + TGR S QN+P + Sbjct: 602 IDEDGRIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------ 636 Query: 359 LASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 VR + + ++ AD + IE RVLA IA ++ I AF + DI+ T ++ F Sbjct: 637 EMGREVRKVFVPNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHTKTASEVF 696 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 PID+V+ R K + + Y G AK K + + + + + Sbjct: 697 KVPIDEVTVNMRGNAKAVNFGIVYGIGDFSLAKDLKISRKEAKGYIDTYFERYPNVKKYM 756 Query: 474 DWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRA 512 D ++ A+ + G+A +++K A Sbjct: 757 DETIDKAKRDMYVTTILNRRRFIPEIGNKNKIVKALGERLAMNTPIQGSAADIIKMAMVK 816 Query: 513 ----------KHQGVLQLWKDL 524 K + +LQ+ +L Sbjct: 817 VFNVLKERDLKSKIILQVHDEL 838 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 35/272 (12%), Positives = 81/272 (29%), Gaps = 30/272 (11%) Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG---YQGGAKVFKTMA 452 + I+ + FN V+ R L Y+ G +V K Sbjct: 596 EGLKNVIDEDGRIHSS-----FN---QTVTTTGRLSSTEPNLQNIPIKYEMGREVRKVFV 647 Query: 453 SHCGLDLQQFSQN-------VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + + + + + E+ A HH + + K + + Sbjct: 648 PNYENSIILSADYSQIELRVLAHIADDENLINAFKHHADIHTKTASEVFKVPIDEVTVNM 707 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPS 564 A +A + G++ D + + A+ + K+ + + + Sbjct: 708 RGNA-KAVNFGIVYGIGDFSLAKDLKISRK---EAKGYIDTYFERYPNVKKYMDETIDKA 763 Query: 565 SRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------ 617 R + + + ++ ++ + G +L N +Q + DI+ M Sbjct: 764 KRDMYVTTILNRRRFIPEIGNKNKIVKALGERLAMNTPIQGSAADIIKMAMVKVFNVLKE 823 Query: 618 TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 I+L VHDE++ + ++ Sbjct: 824 RDLKSKIILQVHDELILNVYKDELEEIKSIVK 855 >gi|73662384|ref|YP_301165.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494899|dbj|BAE18220.1| DNA polymerase I [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 876 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 92/515 (17%), Positives = 168/515 (32%), Gaps = 67/515 (13%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I A +D + D + P +L+ +L ++ + +++ I+ + +DI Sbjct: 332 DILKFAL-YDGSNHVVIDADKVHDYP-ELIAWLENDKTEKIVYDAKKSYIVAHR---LDI 386 Query: 89 PSKRWICTSVLARTNGLPSSL--KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYD 146 K + +LA PS + F +H K I F KG P D Sbjct: 387 AIKHIVFDVMLASYIIDPSRTIDDVNSVVSYFDQHYVK-----ESIEVFGKGKKRHVPED 441 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +HV K +EA E + + L D E L + + + G + Sbjct: 442 EILDHHVGTIIEAINKTKPKMEAQLEEYNQTNLLDDLELPLARILSEMEETGIYTVATDL 501 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 ++++ I + L +I + L + LF + ++ ++ T Sbjct: 502 QEMEKEIQAKLDVLINNIYNAAGESF-NINSPKQLGVVLFETLELPVIKKTKTGYSTAVD 560 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 +L D IL S + L + +S D R+ A +TGR S Sbjct: 561 VLEQLQGQHPIIDYILEYRTLSKLQSTYVEGLQKVISEDNRIHTRFNQTLA-QTGRLSSV 619 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLA 382 QN+P + +R +S+ + AD + Sbjct: 620 DPNLQNIPIR------------------------LEEGRRIRKAFKSSDDNNVIFSADYS 655 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I ++ +AF N EDI+ T K FN D+V R K + + Y Sbjct: 656 QIELRVLAHITQDESMKQAFINDEDIHTATAMKVFNVQPDEVDSLMRRQAKAVNFGIVYG 715 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477 G ++ + + + + + Sbjct: 716 ISDYGLSQSLGITRKQAKQFIDDYLDSFPGVKQYMEDIVKDCKAQGYVETLLHRRRYIPD 775 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 S + ++ A+ + G+A +++K A Sbjct: 776 ITSRNFNLRGFAERTAMNTPIQGSAADIIKLAMVN 810 Score = 41.6 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M N T ++L VHDE++ E P + + +M Sbjct: 796 IQGSAADIIKLAMVNFVNEVKHTDFHAQLLLQVHDELIFELPKDEVEAFSEFIEEIMDNA 855 Query: 655 PSWAKGLPLKAE 666 A +PLK E Sbjct: 856 L--ALDVPLKVE 865 >gi|103486118|ref|YP_615679.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] gi|98976195|gb|ABF52346.1| DNA polymerase I [Sphingopyxis alaskensis RB2256] Length = 937 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 97/608 (15%), Positives = 197/608 (32%), Gaps = 101/608 (16%) Query: 12 SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71 PL G +AE+ A L D+ V+ V H Sbjct: 386 CYIPLGHGGTDMFAEKPEQIAMGDAL-----------------ERLGALFADDAVLKVGH 428 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE---- 127 N ++ + + G+ + A G + L+ ++ Sbjct: 429 NLKYDIGVLAQH-GVTVAPYDDTLLMSFALDAGKHQHGLDELAKLHLDHVCLSFKDVCGT 487 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 GK+ I F + +D V + +E +++ +R L Sbjct: 488 GKSQI-SFAEVQLDRATEYAAEDAEVAWRLWKLLKLRLPLEGGTRVYEM------VDRPL 540 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + + G +D D + KL A E +++ +I L + L LF Sbjct: 541 AAVVEGMERAGIMVDRDYLAKLSGEFANEMLRIEGEIHALAGQPF-AIGSPRQLGEILFD 599 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKD-LILNRLASSGSAILKL-----NTLSEAVSS 301 G+ + + + +L +D + + R + KL + L E V++ Sbjct: 600 KMGLKGGRKGKSG-DWSTDQNELERLERDGVPIARKILEWRQLAKLKSTYTDALQEQVNA 658 Query: 302 D-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 GR+ + GA +TGR S QN+P + Sbjct: 659 TTGRVHTSYSLVGA-QTGRLSSTDPNLQNIPIRT------------------------EV 693 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R IA+ G L+ AD + IE R+ A +A +AFA G+DI+ T + F Sbjct: 694 GRQIRDAFIAAPGHVLIAADYSQIELRLAAHMADVPELKEAFARGDDIHAATAIELFG-- 751 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-- 474 +V+++ R K + ++ Y G A + + ++ + S + Sbjct: 752 --EVNRDTRGKAKTVNFSILYGISRWGLAGRLEITPDEAQALISRYFERFPGISDYISDT 809 Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA--- 512 + + ++ + + A+ + GT+ +L+K+A Sbjct: 810 LETARARGYTETLFGRKTWFPRIKAANQNERAGSERAAINAPIQGTSADLIKRAMARMPG 869 Query: 513 ----KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 +++ + + E + +A V + ++M + + + +P + Sbjct: 870 ALADAGLADVKMLLQVHDELVFEAPEDKAAAAGEV--IRAVMMGAAEPALKLSVPLEVEI 927 Query: 569 VYSDVKGD 576 GD Sbjct: 928 GTGKSWGD 935 >gi|187778405|ref|ZP_02994878.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] gi|187772030|gb|EDU35832.1| hypothetical protein CLOSPO_01998 [Clostridium sporogenes ATCC 15579] Length = 875 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 88/579 (15%), Positives = 187/579 (32%), Gaps = 104/579 (17%) Query: 17 PKVGVWAYAEQAVITLCA-------Y-AWDDEPVKLWDR------TEQSAMPSDLLQYLR 62 + ++ Y E I L + Y ++ DE V D T++ + + Sbjct: 322 KENKLYLYFELEDIVLFSKSRIKILYVSFKDE-VYRIDFETLLKNTKEEFI-EVCKEIFE 379 Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 + + + ++S R + +K + + LA P + +L Sbjct: 380 SKEIKKITYDSKNPRTVLRK---LGMEFNGINFDINLAAYLIDPVRKEYEISSL------ 430 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD 182 + L + D N + E +D + L+K Sbjct: 431 ----ASEYLFKNINREDEDL---KIKEVNIMPKLYKVLEEKIKDQDIEELLYK------- 476 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E+ L + G+++D +++L+L++ E + +I +++ + L Sbjct: 477 IEQPLTETLSAMETEGFKVDKNILLQLEKKFKGEIESTQSEIYSMSEEEF-NINSPKQLG 535 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + ++ ++ T +L D I + + L A+ Sbjct: 536 KILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGLKAAI 595 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DG++ + TGR S QN+P + Sbjct: 596 DEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY------------------------E 630 Query: 360 ASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R I + ++ AD + IE RVLA I+ + I AF +DI+ T ++ F Sbjct: 631 MGREIRKVFIPNTEDSVILSADYSQIELRVLAHISNDKNMISAFNEHDDIHTKTASEVFK 690 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 PID+V+ R+ K + + Y G ++ + + + + + + Sbjct: 691 VPIDEVTPLMRSNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVKIYLE 750 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 ++ +S + ++ A+ + G+A +++K A Sbjct: 751 NIVEEAIQKGYVTTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLAMVNV 810 Query: 514 HQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 H+ +LQ+ +L E +R Sbjct: 811 HRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKR 849 >gi|148380963|ref|YP_001255504.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|153933368|ref|YP_001385333.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|153935166|ref|YP_001388741.1| DNA polymerase I [Clostridium botulinum A str. Hall] gi|148290447|emb|CAL84575.1| DNA polymerase I [Clostridium botulinum A str. ATCC 3502] gi|152929412|gb|ABS34912.1| DNA polymerase I [Clostridium botulinum A str. ATCC 19397] gi|152931080|gb|ABS36579.1| DNA polymerase I [Clostridium botulinum A str. Hall] Length = 875 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 85/583 (14%), Positives = 183/583 (31%), Gaps = 105/583 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58 L + Y E I L + YA + V D + Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYRIDFEMLIKNTKEQFIEVCK 375 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + + + +++ R + +K + I LA P + +L Sbjct: 376 EIFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSLAS 432 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + F K + +++ E K +++ + L Sbjct: 433 EYLFKNINR----EDEFLKIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E+ L + G+++D D++L+L++ E + +I +++ + Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L D I + + L Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A+ DG++ + TGR S QN+P + Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T + Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 + F PI++V+ R K + + Y G ++ + + + + Sbjct: 687 EVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ +S + ++ A+ + G+A +++K A Sbjct: 747 LYLENIVEEAIEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 H+ +LQ+ +L E ++ Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849 >gi|125716978|ref|YP_001034111.1| DNA polymerase I [Streptococcus sanguinis SK36] gi|125496895|gb|ABN43561.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains, putative [Streptococcus sanguinis SK36] Length = 880 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%) Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161 LP++ +A LA + + E + + + + D + + QLF Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELVTIARLYGQTILPTDDEVYGKGAKRALPEQEQLFKH 448 Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + ++ +L L + E+ L + + G +++ + + +Q Sbjct: 449 LARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQAE 508 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + L ++I L + L LF G+ L + + + + Sbjct: 509 NEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567 Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 LA + I KL + L EA+++DG++ ++TGR S Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386 QN+P +R + L+ +D + IE Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442 RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + + Y Sbjct: 663 RVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480 G A +Q + + + + S Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534 + +++ A+ + G+A +++K A + + ++ + + V Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPN 842 Query: 535 GGSISARRVAN 545 + R++ Sbjct: 843 DELTAVRKLVK 853 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMETA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|255658136|ref|ZP_05403545.1| DNA polymerase I [Mitsuokella multacida DSM 20544] gi|260849443|gb|EEX69450.1| DNA polymerase I [Mitsuokella multacida DSM 20544] Length = 878 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 65/370 (17%), Positives = 129/370 (34%), Gaps = 56/370 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + + G ++ + + E +A + +++ I ++ + Sbjct: 476 MKTVELPLVEVLAAMEQNGVYVNRAHLAEKTEEVADRLQTIEQSIYEMAGHTF-NLNSPK 534 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + + ++ T +L + + IL S L+ ++ Sbjct: 535 QLGTVLFEELDLPVRKKTKTGYSTNAEVLESLRLEHPIVEQILAYRLWSKLKSTYLDGIT 594 Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + +D GR+ + + TGR S QN+P + Sbjct: 595 GLIRTDTGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT--------------------- 632 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R+ G L+ AD + IE R+LA ++G++ I F G+DI+ T A Sbjct: 633 ---EEGRMIRALFEPGEGYDYLLSADYSQIELRLLAHMSGDENFIDVFKRGQDIHARTAA 689 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F P+++V+ E R K + + Y G A+ G + ++ + Sbjct: 690 EVFGIPLEEVTPELRRHAKAVNFGIVYGISDFGLARNLHISRKEAGDYISRYFERYPGVR 749 Query: 471 TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509 F D AE+H A+ + GTA +++K A Sbjct: 750 AFMDKVVAEAHETGYVTTMFGRRRELPAIKSRNFNQRMLAERMAMNTPIQGTAADVIKLA 809 Query: 510 WRAKHQGVLQ 519 A + + + Sbjct: 810 MIAAYHRLKE 819 Score = 40.9 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647 +Q + D++ M + G I+L VHDE+V E ++ V + Sbjct: 798 IQGTAADVIKLAMIAAYHRLKEAGVKSRILLQVHDELVLEVVESELDVVQAI 849 >gi|167629830|ref|YP_001680329.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] gi|167592570|gb|ABZ84318.1| DNA polymerase i [Heliobacterium modesticaldum Ice1] Length = 939 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 66/406 (16%), Positives = 130/406 (32%), Gaps = 70/406 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G +++ ++ ++ + + ++L DI L + T Sbjct: 536 DVELPLAPILGAMEWTGIKVNPAVLQEMAGELGADIRRLQADIYDLAGESF-NINSTQQF 594 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT------L 295 LF G+ ++ ++ + +LA + ++KL + L Sbjct: 595 GKILFEKLGLPVIKRTK--TGYSTDVEVLEELADRHPIVPKVLEYRQLMKLKSTYVEGLL 652 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 DGR+ + + TGR S QN+P Sbjct: 653 PLIDGEDGRIHTSFN-QAVTATGRLSSTEPNLQNIP------------------------ 687 Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R A + L+ AD + IE R+LA ++G+ AFA +DI+ T + Sbjct: 688 VRLEQGRRIRKAFTAPGDDWTLLAADYSQIELRILAHLSGDPSFKDAFAKNQDIHTRTAS 747 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F P++ V+ E R K + + Y G ++ + + + + Sbjct: 748 EVFGVPMENVTSEMRRRAKAVNFGIVYGISDFGLSRDLGVLRAEARQYIDGYFDRYSGVK 807 Query: 471 TFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKA 509 + D AE+ A+ + GTA +++K A Sbjct: 808 GYIDEIIAEARRQGYVTTLLGRRRRLPDLFVKNKIRQNFGERAAMNTPIQGTAADIIKAA 867 Query: 510 WRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 K + +LQ+ +L + R Sbjct: 868 MVRIPGLLAAKGLKTRMLLQVHDELIFEAPKEELSEAAALIRETME 913 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 16/217 (7%) Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + +A+ + ++ +F+D A++ + + F V + + + ++ Sbjct: 707 WTLLAADYSQIELRILAHLSGDPSFKD-AFAKNQDIHTRTASEVFGVPMENVTSE---MR 762 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDV-HIVLPSSR 566 + +A + G++ D V AR+ + K + I+ + R Sbjct: 763 RRAKAVNFGIVYGISDFGLSRDLGVL---RAEARQYIDGYFDRYSGVKGYIDEIIAEARR 819 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA----TKNG 621 + + + G L + + +G + N +Q + DI+ M G Sbjct: 820 QGYVTTLLGRRRRLPDLFVKNKIRQNFGERAAMNTPIQGTAADIIKAAMVRIPGLLAAKG 879 Query: 622 YDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKNP 655 + VHDE++ E P L M + Sbjct: 880 LKTRMLLQVHDELIFEAPKEELSEAAALIRETMEQTI 916 >gi|326204649|ref|ZP_08194505.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] gi|325985216|gb|EGD46056.1| DNA polymerase I [Clostridium papyrosolvens DSM 2782] Length = 896 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 95/560 (16%), Positives = 180/560 (32%), Gaps = 101/560 (18%) Query: 7 DIETR-SPQPLP-KVGVW-------AYAEQAVITLCAYAWDDE--PVKLW---DRTEQSA 52 D+++ S L KV V+ +Y + LC +A ++E P + T Q A Sbjct: 318 DLQSYISAIKLSGKVAVYYHVDPTGSYMDD----LCIFACNEEYAPANIVFSEKLTCQEA 373 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKN 111 + ++L + + + H + K L I + I + +A P+ Sbjct: 374 L-NELREIFESKDIEKYGH----DLKNLYKYLKSHGIELENVIFDTFIAAYILEPTRSTY 428 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L + + + L + K + E C V A Sbjct: 429 TISELYEDKLKQSITPVEILYDKHGKRLQQEQDISSS------------EVCAAAVNAIY 476 Query: 172 ELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L ++L P+ + E L + + RG+++D++ + + + L+ Sbjct: 477 VLIQKLRPIIRDNGQDELYYEIELPLVEVLADMELRGFKVDVEGLQAYSKEMDSRLVILE 536 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278 +I + L + LF G+ + ++ T +L + + I Sbjct: 537 NEIYMQAGETF-NINSPKQLGVILFEKLGLPVGKKTKTGYSTNAEVLEQLSYKHEIVERI 595 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + L + DG++ + TGR S QN+P Sbjct: 596 LEYRQLMKLKSTYADGLLSVLEQDGKIHSNFN-QTVTATGRISSTEPNLQNIP------- 647 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R I +N L+ AD + IE RVLA I + Sbjct: 648 -----------------VKLEMGRKIRKVFIPTNQDYVLLDADYSQIELRVLAHITDDSN 690 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMAS 453 I+AF EDI+ TT +K F P ++VS R+ K + + Y G +K Sbjct: 691 MIEAFLKNEDIHTTTASKVFGIPPEEVSSLMRSRAKAVNFGIVYGIGDFSLSKDIGVTKK 750 Query: 454 HCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEF 492 + + + + +S + M+ Sbjct: 751 EARQYIDDYLDKYSKVKEYMSDTVEKGKEFGFVTTLYNRRRYLPELKSSNFNMRSFGERV 810 Query: 493 AVKDKLIGTACELVKKAWRA 512 A+ + G+A +++K + Sbjct: 811 AMNTPIQGSAADIIKISMVK 830 >gi|163814036|ref|ZP_02205428.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] gi|158450485|gb|EDP27480.1| hypothetical protein COPEUT_00189 [Coprococcus eutactus ATCC 27759] Length = 886 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 136/382 (35%), Gaps = 66/382 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E + RG R+D + + + K+L + I++ + L Sbjct: 488 NVELPTVYTLHDMEKRGVRVDRTALEEYSHKLESRIKELHDSIIEYAGKDF-NINSPKQL 546 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSH-SNITQLAKDLILNRLASSGSAILKLNTLSE 297 LF + ++ T +L N+ + D++ R S ++ + L Sbjct: 547 GPVLFEDMALPGGKKTKTGYSTSADVLEKIKNVHPIINDILEYRQLSKLNSTYAI-GLGS 605 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 +SSDGR+ GT + TGR S QN+P + Sbjct: 606 FISSDGRIHGTFN-QTITATGRISSTDPNLQNIPMR------------------------ 640 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R I +G V AD + +E RVLA ++ + AF N DI+ TT ++ F Sbjct: 641 MELGRLIRKAFIPQDGFVFVDADYSQVELRVLAHLSDDSVMKNAFQNNIDIHSTTASEVF 700 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 PID+V+ QR K + + Y G ++ ++++ KS T+ Sbjct: 701 GVPIDEVTPLQRRHAKAVNFGIVYGISAFGLSEDLGISRKEASDFIEKYYDTYKSIKTYL 760 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 D + +S + + A+ + G+A +++K A Sbjct: 761 DGQVKFAKENGYVKTMFGRIRPIPELKSSNFMQRSFGERVAMNSPIQGSAADIIKIAMLH 820 Query: 513 KH----------QGVLQLWKDL 524 + + +LQ+ +L Sbjct: 821 VNIKLKELGLKSRLILQIHDEL 842 Score = 40.5 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M + G ++L +HDE++ ET Sbjct: 793 QRSFGERVAMNSPIQGSAADIIKIAMLHVNIKLKELGLKSRLILQIHDELLIETAKDEVD 852 Query: 643 SVGTL 647 +V + Sbjct: 853 TVRKI 857 >gi|27468285|ref|NP_764922.1| DNA polymerase I [Staphylococcus epidermidis ATCC 12228] gi|27315831|gb|AAO04966.1|AE016748_200 DNA polymerase I [Staphylococcus epidermidis ATCC 12228] Length = 903 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 81/524 (15%), Positives = 170/524 (32%), Gaps = 65/524 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + + + + E L+Q+L D+ + +++ + LGI+I Sbjct: 359 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 415 Query: 89 PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + S+ + + + ++ K I F KG P + Sbjct: 416 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 469 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + +++ E + ++ L D E L + + + G D++ + Sbjct: 470 ILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 529 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ I ++ L +I + + L + LF + ++ ++ T + Sbjct: 530 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 588 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L D IL + + L + +S D R+ A +TGR S Sbjct: 589 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 647 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P + +R S ++ AD + Sbjct: 648 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 683 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA I ++ AF NG DI+ T K FN D+V R K + + Y Sbjct: 684 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 743 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478 G ++ + + + + Sbjct: 744 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 803 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A + + + Sbjct: 804 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 847 Score = 40.5 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M TK ++L VHDE++ E P + + +M + Sbjct: 823 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 882 >gi|166031749|ref|ZP_02234578.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] gi|166028202|gb|EDR46959.1| hypothetical protein DORFOR_01450 [Dorea formicigenerans ATCC 27755] Length = 875 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 66/379 (17%), Positives = 130/379 (34%), Gaps = 58/379 (15%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E + L D E L + G R + + + + +L+++I ++ Sbjct: 466 LEETQMLHLFEDIEMPLVFTLYDMERNGIRAEGEALKVYSSQLGGRISELEKEIYEMAGE 525 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ + S + +LA D + + Sbjct: 526 SF-NINSPKQLGVILFEKLLLPGSKKTKSG--YSTAASVLDKLAPDYPIVSKVLEYRQLT 582 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L + DGR+ + TGR S QN+P Sbjct: 583 KLKSTYADGLVNYIEEDGRIHSKFN-QTITATGRISSTEPNLQNIP-------------- 627 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R + +G V AD + IE RVLA +G+ I+A+ Sbjct: 628 ----------VRVELGRLIRKVFVPEDGYIFVDADYSQIELRVLAHCSGDANLIEAYREE 677 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 +DI+ T ++ F+ P ++V+ QR K + + Y G ++ ++ Sbjct: 678 KDIHRITASQVFHIPFEEVTPLQRRNAKAVNFGIVYGISSFGLSEDLSIGRKEAAKYIED 737 Query: 462 FSQNVKSTSTFEDWEQAESHHL--------------------WMQDQY-PEFAVKDKLIG 500 + + TF D A + + +MQ + A+ + G Sbjct: 738 YFKTYPGIKTFLDDTVAHAKEMGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNAPIQG 797 Query: 501 TACELVKKAWRAKHQGVLQ 519 TA +++K A ++ + + Sbjct: 798 TAADIMKIAMIGVNRRLKE 816 >gi|239626380|ref|ZP_04669411.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516526|gb|EEQ56392.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 920 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 63/394 (15%), Positives = 135/394 (34%), Gaps = 65/394 (16%) Query: 156 WQLFGEYCKRDVEA-TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 W+ ++ + L+K + E L + G +++ + + + Sbjct: 501 WKAAAPLTRQLKDTGMYALYK------EIEMPLIYSLYHMEQEGVKVERAELEEYGNRLK 554 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 L+++I + T + L LF + ++ + + +LA Sbjct: 555 VRIVDLEQEIYRDTGKEF-NINSPKQLGEILFEDMKMPGGKKTK--TGYSTAADVLDKLA 611 Query: 275 KDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D + + + KLN+ L+ + DGR+ G + TGR S QN Sbjct: 612 PDYPVVQKILDYRQLTKLNSTYAEGLAAYIGEDGRIHGKFN-QTITATGRISSTEPNLQN 670 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P +R + G V AD + IE R+L Sbjct: 671 IP------------------------VRMELGREIRKVFVPKEGCVFVDADYSQIELRIL 706 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++G++ I+A+ + +DI+ T ++ F+ P+ +V+ QR K + + Y G + Sbjct: 707 AHMSGDERLIEAYRSAQDIHAITASEVFHVPLGEVTPLQRRNAKAVNFGIVYGISAFGLS 766 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLW 484 + + ++ + F D + +S + Sbjct: 767 EDLSISRKEAVEYINKYFETYPGVKIFLDGLVSQGKEQGYVTTLYGRRRPIPELKSANFM 826 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + A+ + G+A +++K A A + + Sbjct: 827 QRQFGERVAMNSPIQGSAADIMKIAMIAVDRELR 860 >gi|168181699|ref|ZP_02616363.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|237796465|ref|YP_002864017.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] gi|182675010|gb|EDT86971.1| DNA-directed DNA polymerase [Clostridium botulinum Bf] gi|229261470|gb|ACQ52503.1| DNA polymerase I [Clostridium botulinum Ba4 str. 657] Length = 875 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 87/583 (14%), Positives = 187/583 (32%), Gaps = 105/583 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58 L + Y E I L + YA + V D + Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRIKTLYANFKDEVYRIDFEMLLKNTKEQFIEVCK 375 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + + + +++ R + +K + I LA P + +L Sbjct: 376 EIFESKEIKKITYDAKNPRTILRK---LGIEFNGIKFDINLAAYLIDPVRKEYEISSL-A 431 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 SE+L K + I + + ++ Y + +++ + L Sbjct: 432 SEYLFKNINREDEILKIKEVNMMPKLYKVL----------------EEKIKEQDMEELLY 475 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E+ L + G+++D D++L+L++ E + +I +++ + Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L D I + + L Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A+ DG++ + TGR S QN+P + Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T + Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 + F PI++V+ R K + + Y G ++ + + + + Sbjct: 687 EVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ +S + ++ A+ + G+A +++K A Sbjct: 747 LYLENIVEEAVEKGYVNTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 H+ +LQ+ +L E ++ Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVYKDELEKIKALVKK 849 >gi|322391169|ref|ZP_08064641.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] gi|321145922|gb|EFX41311.1| DNA-directed DNA polymerase I [Streptococcus peroris ATCC 700780] Length = 889 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 89/596 (14%), Positives = 195/596 (32%), Gaps = 97/596 (16%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + +L+ ++T + V ++ ++L + G+D+ + Sbjct: 349 FAWSCGD---KLYATDKLELLQDPILKDFLEKTPLKV-YDFKKAKVLLNR-FGLDLQAPA 403 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + S LA+ N +++ + KG + P T Sbjct: 404 F--DSRLAKYLLSTVENNEISTIANLYGQTYLVDD----ETFYGKGVKKAIPERET---- 453 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRID 202 F E+ R V E L+ L + E+ L + + G ++ Sbjct: 454 ------FLEHLARKVAVLVETEPVLLEKLCENGQLDLLYEMEQPLAFVLAKMEIAGIKVK 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + +L++Q +KL ++I +L + L LF G+ + + Sbjct: 508 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGELLFEKLGLPIEYTKKTKTG 566 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + + +LA + + I K+ + L + + +DG++ ++T Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQT 625 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474 + Y G + + + + + D Sbjct: 722 NFGVVYGISDFGLSNNLGISRKDAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 781 Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 S + ++ A+ + G+A +++K A + +++ Sbjct: 782 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQ------- 834 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + V VP+ + K+ V + + +L + + + ++ Sbjct: 835 -TKMLLQVHDEIVLEVPKSELAAIKKLVKQTMEEAIQLSVPLIADENEGVTWYEAK 889 >gi|325697968|gb|EGD39851.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK160] gi|327458424|gb|EGF04780.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1] gi|327471749|gb|EGF17190.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK408] Length = 880 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%) Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161 LP++ +A LA + + E + + + + D + + QLF Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLFEH 448 Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + ++ +L L + E+ L + + G +++ + + +Q Sbjct: 449 LARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQAE 508 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + L ++I L + L LF G+ L + + + + Sbjct: 509 NEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567 Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 LA + I KL + L EA+++DG++ ++TGR S Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386 QN+P +R + L+ +D + IE Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442 RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + + Y Sbjct: 663 RVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480 G A +Q + + + + S Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534 + +++ A+ + G+A +++K A + + ++ + + V Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPN 842 Query: 535 GGSISARRVAN 545 + R++ Sbjct: 843 DELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|57867172|ref|YP_188827.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251811085|ref|ZP_04825558.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|282875888|ref|ZP_06284755.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] gi|57637830|gb|AAW54618.1| DNA polymerase I [Staphylococcus epidermidis RP62A] gi|251805382|gb|EES58039.1| DNA polymerase I [Staphylococcus epidermidis BCM-HMP0060] gi|281294913|gb|EFA87440.1| DNA-directed DNA polymerase [Staphylococcus epidermidis SK135] Length = 876 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 81/524 (15%), Positives = 171/524 (32%), Gaps = 65/524 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + + + + E L+Q+L D+ + +++ + LGI+I Sbjct: 332 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388 Query: 89 PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + S+ + + + ++ K I F KG P + Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 442 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + +++ E + ++ L D E L + + + G D++ + Sbjct: 443 ILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 502 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ I ++ L +I + + L + LF + ++ ++ T + Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L D IL + + L + +S D R+ A +TGR S Sbjct: 562 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 620 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P + +R S ++ AD + Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA I ++ AF NG DI+ T K FN D+V R K + + Y Sbjct: 657 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478 G ++ + + + + Sbjct: 717 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S ++ ++ A+ + G+A +++K A + + + Sbjct: 777 TSRNVNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820 Score = 40.5 bits (93), Expect = 0.86, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M TK ++L VHDE++ E P + + +M + Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855 >gi|154482924|ref|ZP_02025372.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] gi|149736208|gb|EDM52094.1| hypothetical protein EUBVEN_00621 [Eubacterium ventriosum ATCC 27560] Length = 877 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 105/614 (17%), Positives = 193/614 (31%), Gaps = 132/614 (21%) Query: 72 NSLFERILFKKTLGIDIPSKRW---ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 N+ E + DI I +A P L+N + + M Sbjct: 366 NAKAELTILNIKENNDILENDDAESIFDISIAAYLLNP--LQNTYDYDDIAREYLGMN-V 422 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQ--AWQLFGEYCKRDVEAT-RELFKRLIPLSDGER 185 A F K + P D N ++ + + Y +D + + L ++ E Sbjct: 423 PAFDEIFPKTKKNETPSDEIPENILKYACYNAYVAYKAKDALTEKLKETEMLDIYNNVEI 482 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + G + D + + E + L++DI + L L Sbjct: 483 PLTYALYDMEQAGIMVAGDKLKEYGERLKTGIDALEKDIFAEAGHEF-NINSPKQLGEIL 541 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300 F + ++ + S + +L D + KL + L+ + Sbjct: 542 FGEMQLPGGKKTKTGYSTSAS--VLEKLEPDYPFVSKILEYRQLAKLKSTYADGLAVYIG 599 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 D R+ G + TGR S QN+P + PLG Sbjct: 600 EDNRIHGKFN-QTITATGRISSTEPNLQNIP---------------------VRMPLG-- 635 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R I G + AD + IE R+LA ++ + I A+ + +DI+ T + F+ P Sbjct: 636 -REIRKVFIPKEGCVFIDADYSQIELRILAHMSDDKNLIDAYNHSKDIHAATASLVFHVP 694 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 +++V+KEQR+ K + + Y + +++ + ++ Q +K F + Sbjct: 695 LEEVTKEQRSNAKAVNFGIVYGISS---FGLSNDLSISRKEAEQYIKD--YFISYP---- 745 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 +K+ L + E +K + G + +LT G Sbjct: 746 ------------GIKNYLDNSVKEAKEKGYSVTMFGRRRPIPELTSG------------- 780 Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTEN 600 + R+ + Sbjct: 781 -----------------NFMQRQFGERVAMNSP--------------------------- 796 Query: 601 IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN 654 +Q + DI+ M N K IVL VHDE++ E + V + ++ +N Sbjct: 797 -IQGSAADIMKIAMINVAKELKEKDLKSKIVLQVHDELLIEAYENE---VEQVKDILKRN 852 Query: 655 PSWAKGL--PLKAE 666 A L PL + Sbjct: 853 MEQAAHLNVPLDVD 866 >gi|293366362|ref|ZP_06613041.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|291319487|gb|EFE59854.1| DNA-directed DNA polymerase I [Staphylococcus epidermidis M23864:W2(grey)] gi|329733786|gb|EGG70112.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU045] Length = 876 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 81/524 (15%), Positives = 170/524 (32%), Gaps = 65/524 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + + + + E L+Q+L D+ + +++ + LGI+I Sbjct: 332 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388 Query: 89 PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + S+ + + + ++ K I F KG P + Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 442 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + +++ E + ++ L D E L + + + G D++ + Sbjct: 443 ILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 502 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ I ++ L +I + + L + LF + ++ ++ T + Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L D IL + + L + +S D R+ A +TGR S Sbjct: 562 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 620 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P + +R S ++ AD + Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA I ++ AF NG DI+ T K FN D+V R K + + Y Sbjct: 657 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478 G ++ + + + + Sbjct: 717 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A + + + Sbjct: 777 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820 Score = 40.5 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M TK ++L VHDE++ E P + + +M + Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855 >gi|312622336|ref|YP_004023949.1| DNA polymerase i [Caldicellulosiruptor kronotskyensis 2002] gi|312202803|gb|ADQ46130.1| DNA polymerase I [Caldicellulosiruptor kronotskyensis 2002] Length = 850 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 65/384 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + ER L + + G+++D D +++ + I + KL+ I ++ + Sbjct: 449 YENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWF-NINSPK 507 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + ++ ++ T +L LIL+ + L Sbjct: 508 QLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLL 567 Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +A++ GR+ T G + TGR + QN+P + Sbjct: 568 QAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY--------------------- 605 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ Sbjct: 606 ---DEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAE 662 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F I V+ E R+ K + + Y G A+ K + ++ + Sbjct: 663 VFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVKE 722 Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D + + ++ A+ + G+A +++K A Sbjct: 723 YIDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAM 782 Query: 511 RAKHQG----------VLQLWKDL 524 +Q +LQ+ +L Sbjct: 783 IKVYQKLKENNLKSKIILQVHDEL 806 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 47/147 (31%), Gaps = 11/147 (7%) Query: 511 RAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 +A + G++ D + ++ + R V V + L Sbjct: 680 KAVNFGIVYGISDYGLARDIKISRKEAAEFINRYFERYPKVKEYIDNTVKFARDNGFVLT 739 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GY 622 + K Y+ S R Y ++ N +Q + DI+ M + Sbjct: 740 LFNRK---RYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKS 796 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS 649 I+L VHDE++ E P V + Sbjct: 797 KIILQVHDELLIEAPYEEKDIVKEIVK 823 >gi|303257898|ref|ZP_07343907.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] gi|302859241|gb|EFL82323.1| DNA polymerase I [Burkholderiales bacterium 1_1_47] Length = 891 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 87/411 (21%), Positives = 156/411 (37%), Gaps = 76/411 (18%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +LF + D + ++++ D E L + + G ID L+ + + + Sbjct: 470 RLFKKALSDDAKLE-KIYR------DIEMPLSDVLFKMEQNGVLIDTKLLDQQTAQLNTK 522 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD-MSEGTLKS--ILSHSNITQL 273 ++L+E ++ + S L LF G+ L + T+ S +++L Sbjct: 523 ARELEEQAFEVAGENFKLS-SPKQLGEILFDKMGVVLEGAKPKKTISGNYSTSEEVLSEL 581 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 A++ L ++A I KL L + V DGR+ T + + TGR S Sbjct: 582 AENYPLAKIALEYRTITKLVTTYTEKLPKMVDPKDGRVHTTFE-QAVAVTGRLSSTNPNL 640 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + VR I+++G KL+ AD + IE R Sbjct: 641 QNIPIRT------------------------EEGRKVREAFISASGCKLISADYSQIELR 676 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444 ++A ++ + ++AF N EDI+ T A+ F DKV+ R I KV+ L Y Sbjct: 677 IMAHLSADKRLVEAFKNNEDIHRATAAEVFGKERDKVTPNDRRIAKVINFGLMYGMSPFG 736 Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-----------HHLWMQDQY--- 489 AK + +F + + +A + LW+ + + Sbjct: 737 LAKNLGIGRDEAKNYINKFFARFPGVHDYMERTRALADRQGYVETTFGRRLWLPEIHAGG 796 Query: 490 ------PEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + GTA +L+K + A K + +LQ+ +L Sbjct: 797 ARRAAAERAAINAPMQGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDEL 847 Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 7/56 (12%) Query: 603 QAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 Q + D++ M + G ++L +HDE++ E P+ V L +M Sbjct: 812 QGTAADLIKLSMIAVQKWIEEKGLKSKLILQIHDELIMEVPEAEVDLVKENLPKIM 867 >gi|224476781|ref|YP_002634387.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] gi|222421388|emb|CAL28202.1| DNA polymerase I [Staphylococcus carnosus subsp. carnosus TM300] Length = 876 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 84/532 (15%), Positives = 165/532 (31%), Gaps = 89/532 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 A I D V + + + + P +L+++L ++ +++ L ID Sbjct: 331 ADILKFGIQADGHFV-VINAEQINDYP-ELVEWLENDQTRKRVYDAKK-TYAEAHRLNID 387 Query: 88 IPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPP-- 144 I + + + + S+ + + N+ ++ + + KG P Sbjct: 388 IKNVSF-DIMLASYILDPSRSIDDVYSVVHNYGQNYV-----AEEVNIYGKGRKRQIPED 441 Query: 145 ----------YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 D + + E+ + D LF+ L E L + + Sbjct: 442 EVLDTYIASILDAISESTPIMYDQLEEFNQLD------LFESL------ELPLARILGEM 489 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 + G D+D + ++++ I + L I + L + LF + ++ Sbjct: 490 EELGIYTDVDELKEMEKEIQGKLDTLITRIHDAAGEDF-NINSPKQLGVVLFENLKLPVI 548 Query: 255 DMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ T +L D IL S + L + + +D R+ Sbjct: 549 KKTKTGYSTAVDVLEQLQGEHPIIDDILEYRQLSKLQSTYIEGLQKVIQNDHRIHTHFNQ 608 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IA 370 A +TGR S QN+P +R A Sbjct: 609 TLA-QTGRLSSVDPNLQNIP------------------------VRLEEGRRIRKAFKPA 643 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G ++ AD + IE RVLA I ++ IKAF G DI+ T K F D+V R Sbjct: 644 EPGNVILSADYSQIELRVLAHITQDESMIKAFREGHDIHTATAMKVFGVEPDEVDSLMRR 703 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE------------- 473 K + + Y G ++ + + + + Sbjct: 704 QAKAVNFGIVYGISDYGLSQSLGITRKAAKQFIDDYLDSFPGVKQYMSDIVKDAKAKGYV 763 Query: 474 --------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 S + + A+ + G+A +++K A + + Sbjct: 764 ETLLHRRRYIPDITSRNFNRRSFAERTAMNTPIQGSAADIIKLAMVNFDKEI 815 >gi|319651809|ref|ZP_08005934.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] gi|317396461|gb|EFV77174.1| DNA polymerase I [Bacillus sp. 2_A_57_CT2] Length = 877 Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats. Identities = 78/523 (14%), Positives = 177/523 (33%), Gaps = 76/523 (14%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----SLKNACLALN 117 DET +++ + + G+ + + +A PS + + Sbjct: 363 EDETKKKTVYDAKRSEVSLRHH-GVHLKGADF--DLYIASYLINPSQTIEDMASIAKNHG 419 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 ++ ++ A + KG+ P + A H+ K +++ + ++ Sbjct: 420 YNA-------IQSDEAFYGKGAKRRIPEEKELAGHLARKAAALMTLKEKLDSELKENQQS 472 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 D E L L+ + G ++DL+ + + + + + ++++ I +L + Sbjct: 473 ELFYDLEMPLSLILADMESTGIKVDLERLKTMGQDLLSKLDEIEKRIHELAGEAF-NINS 531 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L + LF G+ + ++ T +L + IL+ + Sbjct: 532 PKQLGVILFEKLGLPAIKKTKTGYSTSADVLEKLENSHEIIRDILHYRQLGKLQSTYIEG 591 Query: 295 LSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + V+ G++ ++TGR S QN+P + Sbjct: 592 LLKVVNYETGKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------------------- 630 Query: 354 ADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + S G + AD + IE RVLA IA ++ I+AF DI+ T Sbjct: 631 ----LEEGRKIRQAFVPSEPGWAIFAADYSQIELRVLAHIANDEKLIEAFIEDMDIHTKT 686 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 + F+ ++V+ R K + + Y G ++ G + ++ ++ Sbjct: 687 AMEVFHVNANEVTSNMRRHAKAVNFGIVYGISDYGLSQSLGITRKEAGKFIDRYLESYPG 746 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + D + S + ++ A+ + G+A +++K Sbjct: 747 VKQYMDDIIHDAKQKGYVSTLLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIK 806 Query: 508 KAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544 KA + +L + + V E + +++ Sbjct: 807 KAMIDMADRLRKEELKARLLLQVHDELIFEVPEDEIETLKKIV 849 >gi|324991808|gb|EGC23733.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK405] Length = 880 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%) Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161 LP++ +A LA + + E + + + + D + + QLF Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLFEH 448 Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + ++ +L L + E+ L + + G +++ + + +Q Sbjct: 449 LARKIQVLLETEEPMQEQLRSHNQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQAE 508 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + L ++I L + L LF G+ L + + + + Sbjct: 509 NEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567 Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 LA + I KL + L EA+++DG++ ++TGR S Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386 QN+P +R + L+ +D + IE Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442 RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + + Y Sbjct: 663 RVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480 G A +Q + + + + S Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534 + +++ A+ + G+A +++K A + + ++ + + V Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPN 842 Query: 535 GGSISARRVAN 545 + R++ Sbjct: 843 DELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|306821558|ref|ZP_07455156.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550303|gb|EFM38296.1| DNA-directed DNA polymerase I [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 883 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 85/512 (16%), Positives = 170/512 (33%), Gaps = 74/512 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L DE + + ++ E + L DI + +A+ P + Sbjct: 360 EKIKHILEDENIEKIGYDIKAEYLSL---LPYDISLRGIKYDLKIAKYLLSPDNNSYDIS 416 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR--- 171 + L+ ++ + F KG + T+ + + + + Sbjct: 417 EIAMEYGLSHLQSHEEF---FGKGKKEKVINPFTKKEVEEYYMKVLDIVDSSYDIVMTAI 473 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + D E L + + G ID + + AQ +L+ +I +L Sbjct: 474 RDSEMTKLFEDVEIPLITVLSDMEYIGVAIDKKELENQKIEFAQHILRLESEIYELAGEE 533 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L + LF + V ++ T ++L + I++ + Sbjct: 534 F-NINSPKQLGVILFEKLNLPPVKKTKTGYSTDAAVLEELSDMHDIIGKIISYRQYTKLQ 592 Query: 289 ILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L ++ + R+ + A+ TGR S QN+P Sbjct: 593 STYVEGLLNIINPNTERIHSSFNQTIAA-TGRISSTEPNLQNIP---------------- 635 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R IA G LV +D + IE RVLA I+ E+ I+AF+ D Sbjct: 636 --------VRLEIGRNLRKAFIARQGCVLVDSDYSQIELRVLAHISDEEALIQAFSKDAD 687 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T ++ F I +V+KEQR K + + Y G + G ++ + Sbjct: 688 IHTQTASEVFGVDISEVTKEQRGAAKAVNFGIVYGISDFGLSNNLGITKKKAGQYIKTYL 747 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 K+ + Q + ++ +++ A+ + G+A Sbjct: 748 DRYKNIEKYMQDVVAFGEEHGYVTTILGRRRSIPQLKQKNIMIKNLGKRLAMNTPIQGSA 807 Query: 503 CELVKKAWRA----------KHQGVLQLWKDL 524 +++K A K + +LQ+ +L Sbjct: 808 ADIIKIAMVRVSNRLKRENLKSKLILQVHDEL 839 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 594 GGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 G +L N +Q + DI+ M ++L VHDE++ E + Sbjct: 794 GKRLAMNTPIQGSAADIIKIAMVRVSNRLKRENLKSKLILQVHDELIIEATADEQDYIKA 853 Query: 647 LC-SLMTKN 654 L M+K Sbjct: 854 LLQEEMSKA 862 >gi|326386581|ref|ZP_08208203.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] gi|326208896|gb|EGD59691.1| DNA polymerase I [Novosphingobium nitrogenifigens DSM 19370] Length = 994 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 95/516 (18%), Positives = 165/516 (31%), Gaps = 104/516 (20%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG----LPSSLKNA 112 L L D++V+ V N ++ + + GI + G +P Sbjct: 466 LKPLLEDDSVLKVGQNIKYDLTVLARH-GIAVAPIDDTMVMSFCLDAGRGEPMPFGHGMD 524 Query: 113 CLALN-FSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 LA K ++ GK I F + + D TR Y D Sbjct: 525 ELAERHLGHTTIKFKDVAGTGKKAI-SFAEVPLP----DATR------------YAAEDA 567 Query: 168 EATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 E T L L P E R L + T+ G ++D + + L A Sbjct: 568 EVTWRLHAVLAPRLAEEGGTRIYQRVDRPLVQVIATMEGHGIKVDRERLATLSGEFATRI 627 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV--------DMSEGTLKSILSHSN 269 L+ I + L LF G + L+++ S Sbjct: 628 AALESVIHEKAGTTFTI-GSPKQLGEVLFDKLGYKGGKKGKSGQYSTDQSVLETLASQG- 685 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 ++A ++ R S + + L A++ GR+ + GA +TGR S Q Sbjct: 686 -AEVATLVLEWRQLSKLKST-YTDALQAAINPATGRVHTSYSLVGA-QTGRLSSNDPNLQ 742 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + +R +A G L+ AD + IE R+ Sbjct: 743 NIPVRT------------------------EIGRQIRDAFVAEPGHVLLSADYSQIELRL 778 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GG 444 A IA +AFA+GEDI+ T + F +V+++ R K + A+ Y G Sbjct: 779 AAHIADVPALREAFAHGEDIHARTAMELFG----EVNRDTRGRAKTINFAILYGISRWGL 834 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483 A T A + ++ + + + + S Sbjct: 835 ATRLGTSADEAQAMIDRYFERFPGIQRYIHETLEHVRDRGYSETLFGRKTWFPRIASKTQ 894 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A+ + GT +++K+A +++ Sbjct: 895 AERAGSERAAINAPIQGTCADIIKRAMARMTPALVE 930 >gi|327467325|gb|EGF12825.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK330] Length = 880 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 74/505 (14%), Positives = 160/505 (31%), Gaps = 70/505 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++P+ + + LA+ + + + KG Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + P H+ + ++ +L L + E+ L + + G Sbjct: 435 AKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + +Q + + L ++I L + L LF G+ L + Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + +LA + I KL + L EA+++DG++ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372 ++TGR S QN+P +R + Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 649 DSVLLSSDYSQIELRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K + + Y G A +Q + + + + Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVE 768 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520 S + +++ A+ + G+A +++K A + + ++ Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 + + V + R++ Sbjct: 829 LLQVHDEIVLEVPNDELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|331082028|ref|ZP_08331156.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] gi|330405623|gb|EGG85153.1| hypothetical protein HMPREF0992_00080 [Lachnospiraceae bacterium 6_1_63FAA] Length = 880 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 77/479 (16%), Positives = 155/479 (32%), Gaps = 79/479 (16%) Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL-PSSLKNACLALNFSEHLTKMEEGK 129 HN +F+ L + S+ + P+ K EE Sbjct: 392 HNDMFDA-GLAAYLLNPLKSEYTYDDIAKEFLGEMFPAKEDLLGKLSYIKAANEKEEE-- 448 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 L C + + + ++ E +EL+ +D E L Sbjct: 449 -LAKSVCYMAYTALKSRTSLLEALEK------------ENMKELY------TDMEMPLLF 489 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + G ++ + + + E + + L+++I + + L + LF Sbjct: 490 TLADMEKEGILVEAEALKEYGEKLQVRIEALEKEIWEQAGEEF-NINSPKQLGVILFEKL 548 Query: 250 GIDLVDMSE---GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + ++ T +L +L D++ R + + L+ ++ DGR+ Sbjct: 549 ELPGGKKTKTGYSTAADVLEKLAPEHKLVADILEYRQ-LTKLKSTYADGLANYIAEDGRI 607 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T + TGR S QN+P + +R Sbjct: 608 HSTFN-QTITATGRISSTEPNLQNIPVRT------------------------ELGRLLR 642 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 I +G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P D+V+ Sbjct: 643 KVFIPKDGFIFLDADYSQIELRVLAHMSGDEKLIQAYQEAQDIHRITASQVFHIPFDEVT 702 Query: 426 KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH 481 QR K + + Y G ++ ++ + Q F D E+ Sbjct: 703 PLQRRNAKAVNFGIVYGISSFGLSQDLSISRKEAAQYIESYFQTYPKIKGFLDGLVEEAK 762 Query: 482 HLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +++K A ++ + + Sbjct: 763 EKGYVSTLFHRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVNKRLKE 821 Score = 44.0 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M K +VL VHDE++ ET Sbjct: 787 QRSFGERVAMNSPIQGTAADIIKIAMIRVNKRLKEENLKSRLVLQVHDELLIETAKEEVE 846 Query: 643 SVGTLCSL 650 V + Sbjct: 847 QVSAILEQ 854 >gi|310822212|ref|YP_003954570.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|309395284|gb|ADO72743.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 899 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 77/402 (19%), Positives = 139/402 (34%), Gaps = 68/402 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + +G ++D + L + E + + I L + L Sbjct: 501 DMELPLLPILARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEF-NVGSNPQL 559 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 L+ + + + +G + +LA+ L ++ KL +TL Sbjct: 560 AQVLYEKLQLPI--LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLP 617 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 V+ DGR+ T A+ TGR S QN+P + Sbjct: 618 GLVAKDGRIHTTY-HQAATATGRLSSSDPNLQNIPVRT---------------------- 654 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +A G +LV AD + +E R+LA IA + + AF + EDI+ T A+ Sbjct: 655 --ELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEI 712 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST-ST 471 F DKV ++QR + K + + Y G + ++++ Sbjct: 713 FGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTRLSISVEEARDIIERYFTRYAGIRRY 772 Query: 472 FEDWEQAESHHLWMQDQYPE--------------------FAVKDKLIGTACELVKKAWR 511 ED + +++ + A+ + GTA +L+KKA Sbjct: 773 LEDTVERARKTGYVETMFGRRRLMADLNSKNRAVAQAAERAAINMPIQGTAADLIKKAML 832 Query: 512 AKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543 A + +LQ+ +L + AR+ Sbjct: 833 AVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQC 874 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%) Query: 602 VQAISRDILCEGMKNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGTLCSL-MT 652 +Q + D++ + M + V+ VHDE++ E P+ V L M+ Sbjct: 819 IQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQCMS 876 >gi|153853271|ref|ZP_01994680.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] gi|149754057|gb|EDM63988.1| hypothetical protein DORLON_00665 [Dorea longicatena DSM 13814] Length = 871 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 65/363 (17%), Positives = 121/363 (33%), Gaps = 54/363 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + G R++ D + + + +A + +L+++I + + L Sbjct: 473 DIEMPLVFTLFDMEQNGIRVEADALKQYGDQLAGKIAELEKEIYEEAGETF-NINSPKQL 531 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF + ++ T +L IL + + L+ Sbjct: 532 GVVLFENMKLPGGRKTKTGYSTAADVLEKLAPEHPVVAKILEYRQYTKLKSTYADGLANY 591 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DGR+ G + TGR S QN+P Sbjct: 592 IQDDGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------VRM 626 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R I G + V AD + IE RVLA +G++ I+A+ DI+ T ++ F+ Sbjct: 627 ELGRLIRKVFIPEEGYRFVDADYSQIELRVLAHCSGDEHLIQAYKEQSDIHRITASQVFH 686 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 P D+V+ +QR K + + Y G ++ + + TF D Sbjct: 687 IPFDEVTPQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAKYIDDYFATYPGIKTFLD 746 Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + S + + A+ + G A +++K A Sbjct: 747 HAVTHAKEEGYVVTLFGRRRPVPELSSSNFMQRSFGERVAMNSPIQGAAADIIKIAMIRV 806 Query: 514 HQG 516 +Q Sbjct: 807 NQR 809 >gi|261415194|ref|YP_003248877.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371650|gb|ACX74395.1| DNA polymerase I [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327893|gb|ADL27094.1| DNA-directed DNA polymerase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 972 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 91/521 (17%), Positives = 172/521 (33%), Gaps = 107/521 (20%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI---DIPSKRWICTSVLARTNGL 105 S P + L V HN+ F+ + +T G+ I S I T + A Sbjct: 446 SGSKQPDSAKRSL-------VFHNAKFDLHVLARTFGLTQKQIDSANIIDTLIAAWMLSP 498 Query: 106 P-SSLKNACLALNFSEHLT-----KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF 159 + L + +H + GK I F + I D T Sbjct: 499 GQTGLGLDNQVMQLLQHEMIPIENLIGRGKKQIT-FNRTPIK----DAT----------- 542 Query: 160 GEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKL 209 EY D T L+ L E L + + G +D ++ KL Sbjct: 543 -EYGAEDAVYTLRLWAPLRAKLQKYDYEKYFFSQEMPLLKVLYQMEGVGAFVDTKILKKL 601 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM---SEGTLKSIL- 265 Q + +KL+++I + + L LF G+ + L+ + Sbjct: 602 QTDLEHRIEKLEKEICDMAGCEF-NIGSPKQLGEVLFDTLGLPEIKKRSTDAAVLEELSF 660 Query: 266 --SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 +H + + + L ++ S+ ++ L V+ D R+ + +G + TGR S Sbjct: 661 RSAHPIVFAVIEYRELKKMQSTYVSV-----LPTLVNPDTKRIHTSFIQWG-TATGRLSS 714 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P + +R+ + ++ D Sbjct: 715 RDPNLQNIPVRS------------------------DLGKQIRAAFVPQNPNNVILAVDY 750 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+LA ++G++ I+++ G DI+ T A ++ V+ + R KV+ + Y Sbjct: 751 SQIELRMLAHLSGDEALIESYKEGIDIHARTAAAINRVSLEDVTADMRRDAKVVNFGVLY 810 Query: 442 QGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------- 488 A + K + + + + + F D +A +H + Sbjct: 811 GMTAFRLSRDLKIPMAQAKSFIDGYFEMYQGVQKFIDDTKAAAHRDGYVETLSGRRRYIA 870 Query: 489 ------------YPEFAVKDKLIGTACELVKKAWRAKHQGV 517 AV + G+A +L+K A + + Sbjct: 871 GIDSSDRMESQMAERMAVNTPVQGSAADLIKIAMIRIQKRI 911 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 6/58 (10%) Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 VQ + D++ M K ++L VHDE+V E P ++ + Sbjct: 888 VNTPVQGSAADLIKIAMIRIQKRINDENLPLRMMLQVHDELVFECPKDQVEALSAMVK 945 >gi|315640780|ref|ZP_07895882.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] gi|315483535|gb|EFU74029.1| DNA-directed DNA polymerase I [Enterococcus italicus DSM 15952] Length = 881 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 77/534 (14%), Positives = 170/534 (31%), Gaps = 87/534 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLG 85 + I A++ + T+ ++ D L +L D ++ + + +G Sbjct: 334 SEIVGFAWSNGN----RIYVTDNLSLLEDNALQDWLFDAKRTKSVFDAKRTTVALHRYVG 389 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 S+LA ++ L H + E + A + KG+ P Sbjct: 390 ---SPNGIQFDSLLACYL---LDTNDSSNDLALVAHRYGLTEIETDEAVYGKGAKKGLPE 443 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTIN 195 D + F + R V ++L +L + E L + + Sbjct: 444 DN---------ERFYSHLARKVATMQKLDTKLSDELVEKGQWTLYKEMELPLSFILAEME 494 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G +D ++ ++ A + ++E I + + L + LF G+ ++ Sbjct: 495 ITGIHVDAQRLIAMKSEFATKLHDIEEKIYAQANERF-NLNSPKQLGVILFEKMGLPVIK 553 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ T +L + + IL + + L + SDG++ Sbjct: 554 KTKTGYSTAVDVLEQLKVQAPIVEDILTYRQIAKIQSTYVEGLLRMIQSDGKVHTRYV-Q 612 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 ++TGR S QN+P + +R + N Sbjct: 613 TLTQTGRLSSVDPNLQNIPIR------------------------LEEGRKIRQAFVPRN 648 Query: 373 -GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRA 430 + +D + IE RVLA I+ ++ AF G+DI+ +T + F + V+ R Sbjct: 649 KNWVIYSSDYSQIELRVLAHISKDEHLQAAFIEGQDIHTSTAMRVFGLESAEDVTPNMRR 708 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------ 474 K + + Y G ++ + + + + + Sbjct: 709 QAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYFERYPGVKAYMENVVEQAKKDGYV 768 Query: 475 ---------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + ++ A+ + G+A +++K A ++ + + Sbjct: 769 ETLYHRRRYLPDLYAKNYNIRSFAERTAINSPIQGSAADILKIAMIEMNKRLKE 822 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K ++L VHDE+V E P+ V L +M Sbjct: 801 IQGSAADILKIAMIEMNKRLKEEKLAATMLLQVHDELVFEVPEEELAHVDQLVKEVMEHA 860 Query: 655 PSWAKGLPLKAE 666 + A +PL + Sbjct: 861 VTLA--IPLVTD 870 >gi|116071085|ref|ZP_01468354.1| DNA polymerase I [Synechococcus sp. BL107] gi|116066490|gb|EAU72247.1| DNA polymerase I [Synechococcus sp. BL107] Length = 998 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 125/693 (18%), Positives = 218/693 (31%), Gaps = 155/693 (22%) Query: 4 LFIDIETRSPQP----LPKVGV-WAYAEQAVITLCAY-AWDDEPV-KLWDRTEQSAMP-S 55 + ID ET P L VGV W A A AY +P +L + T +P Sbjct: 400 IAIDTETTDLNPFKAELVGVGVCWGEANDA----LAYIPIGHKPPSELTEATPPQQLPLE 455 Query: 56 DLLQYL----RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSL 109 +L L N+ ++R++ + + + ++LA Sbjct: 456 TVLMALSPWLASPQHPKALQNAKYDRLILLRH---GLTLNGVVIDTLLADYLRDAAAKHG 512 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + F T + F I+ YC DV Sbjct: 513 LDVMSEREFGFRPTTYGDLVGKKQTFADVEIEPA----------------SLYCGMDVHV 556 Query: 170 TRELF-----------KRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 TR L +L+PL + E+ L + + G RID+ + L + + Sbjct: 557 TRRLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTL 616 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +L+ + ++ + + L LF G+D + + +L D Sbjct: 617 NRLETEAKQVAEVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLEHDH 675 Query: 278 ILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + L + KL + L + V + GR+ + TGR S QN+P Sbjct: 676 PVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIP 734 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + S +R + G L+ AD + IE R+L Sbjct: 735 VRT------------------------EYSRRIRKAFLPQEGWTLLSADYSQIELRILTH 770 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++GE+ +A+ G+D++ T + D+VS +QR +GK + + Y GA+ F Sbjct: 771 LSGEEVLQEAYRTGDDVHALTARLLLDK--DEVSADQRRLGKTINFGVIYGMGAQRF--- 825 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 A G+ + + + ++Q + A+ + T Sbjct: 826 ARETGVSSAEAKEFL------TKYKQRYPKVFAFLELQERLALSRGYVET---------- 869 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLV 569 + RR + R + R K + I L +RR Sbjct: 870 -------------------------ILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARR-- 902 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYD 623 +Q +R +Q S DI+ M Sbjct: 903 -----------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAMLLSQGIPAR 945 Query: 624 IVLTVHDEIVSET-PDTPYFSVGTLCSLMTKNP 655 ++L VHDE+V E PD + + + M Sbjct: 946 LLLQVHDELVLEVAPDALDTTRNLVVNTMENAI 978 >gi|229814975|ref|ZP_04445313.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] gi|229809462|gb|EEP45226.1| hypothetical protein COLINT_02017 [Collinsella intestinalis DSM 13280] Length = 931 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 71/391 (18%), Positives = 131/391 (33%), Gaps = 66/391 (16%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + ++ G +D + + + + + L+ I +L G + L Sbjct: 532 IEMPLVRVLASMERAGMYVDPARLAAQSDELVGQIQALEARIRELAGGEEFNLSSPMQLS 591 Query: 243 MYLFLITGIDLVDMSEGTLKSI-LSHSNITQLAKDLILNRLASSGSAILK-----LNTLS 296 LF G+ + + + + LAK+ + RL K L+TL Sbjct: 592 RILFDTLGLPTAGLKKTQRGYYSTNAKVLEDLAKNHEIVRLILEFREKTKIKSTYLDTLG 651 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 DGR+ T + TGR S QN+P + Sbjct: 652 PLRRHDGRVHTTYN-QTITATGRLSSSSPNLQNIPTRS---------------------- 688 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 V+ G V D + IE R+LA ++G++ + AF GED + T A+ Sbjct: 689 --ELGHAVKRAFSVEEGSVFVAIDYSQIELRLLAHLSGDEHLVSAFNEGEDFHAETAARV 746 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P+D+V+ + R+ K + + Y G ++ + + + + T+ Sbjct: 747 FGVPVDEVTPQLRSRAKAVNFGIVYGQQAYGLSQTLDIPMAEAREMIDAYFRAYPGVRTY 806 Query: 473 EDWEQAESHHLWMQDQ-------------------YPEFAVKDKLIGTACELVKKAWRAK 513 D + + A+ + G+A +++K A Sbjct: 807 LDETVTFAKQTGYAETMYGRRRPIPELRIPAQRMFGERTAMNHPMQGSAADIIKIAMVHV 866 Query: 514 HQG----------VLQLWKDLTEGFACVVQE 534 + +LQ+ +L F C V E Sbjct: 867 AERLRAEGFTAKMILQVHDELD--FECPVGE 895 >gi|328945225|gb|EGG39379.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1087] Length = 880 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%) Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161 LP++ +A LA + + E + + + + D + + QLF Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLFEH 448 Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + ++ +L L + E+ L + + G +++ + + +Q Sbjct: 449 LARKVQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQAE 508 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + L ++I L + L LF G+ L + + + + Sbjct: 509 NEKTLESLTQEIYDLAGQKF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567 Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 LA + I KL + L EA+++DG++ ++TGR S Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386 QN+P +R + L+ +D + IE Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442 RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + + Y Sbjct: 663 RVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480 G A +Q + + + + S Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534 + +++ A+ + G+A +++K A + + ++ + + V Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPN 842 Query: 535 GGSISARRVAN 545 + R++ Sbjct: 843 DELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|312793618|ref|YP_004026541.1| DNA polymerase i [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180758|gb|ADQ40928.1| DNA polymerase I [Caldicellulosiruptor kristjanssonii 177R1B] Length = 850 Score = 235 bits (599), Expect = 2e-59, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 152/450 (33%), Gaps = 87/450 (19%) Query: 154 QAWQLFGEYCKRDVEATRE--------LFKRLIP--------------LSDGERDLWLLD 191 + LF Y D+EA R+ L KRL + ER L + Sbjct: 401 ELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVL 460 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G+++D D +L+ + I + KL+ I ++ + L LF + Sbjct: 461 YEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWF-NINSPKQLSYILFEKLKL 519 Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307 ++ ++ T +L LIL+ + L +A++ GR+ Sbjct: 520 PVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHT 579 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T G + TGR + QN+P + +R Sbjct: 580 TFIQTG-TATGRLASSDPNLQNIPVKY------------------------DEGKLIRKV 614 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I V+ E Sbjct: 615 FVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPE 674 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-- 481 R+ K + + Y G A+ K + ++ + + D + Sbjct: 675 MRSQAKAVNFGIVYGISDYGLARDVKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDN 734 Query: 482 -------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------ 516 + ++ A+ + G+A +++K A +Q Sbjct: 735 GFVLTLFNRKRYVKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNL 794 Query: 517 ----VLQLWKDLTEGFACVVQEGGSISARR 542 +LQ+ +L ++ +R Sbjct: 795 KSKIILQVHDELLIEAPYEEKDIVKRIVKR 824 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R Y ++ N +Q + DI+ M + I+L VHDE++ E P Sbjct: 757 LRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKD 816 Query: 643 SVGTLCS 649 V + Sbjct: 817 IVKRIVK 823 >gi|312875885|ref|ZP_07735875.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] gi|311797366|gb|EFR13705.1| DNA polymerase I [Caldicellulosiruptor lactoaceticus 6A] Length = 850 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 82/450 (18%), Positives = 152/450 (33%), Gaps = 87/450 (19%) Query: 154 QAWQLFGEYCKRDVEATRE--------LFKRLIP--------------LSDGERDLWLLD 191 + LF Y D+EA R+ L KRL + ER L + Sbjct: 401 ELETLFVSYLNTDIEAVRKDKKIVSVVLLKRLWDELLRLIDLNSCKFLYENIERPLIPVL 460 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G+++D D +L+ + I + KL+ I ++ + L LF + Sbjct: 461 YEMEKTGFKVDRDALLQYTKEIESKILKLETQIYQIAGEWF-NINSPKQLSYILFEKLKL 519 Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRG 307 ++ ++ T +L LIL+ + L +A++ GR+ Sbjct: 520 PVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLLQAINPSSGRVHT 579 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 T G + TGR + QN+P + +R Sbjct: 580 TFIQTG-TATGRLASSDPNLQNIPVKY------------------------DEGKLIRKV 614 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F I V+ E Sbjct: 615 FVPEEGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFGVDIANVTPE 674 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-- 481 R+ K + + Y G A+ K + ++ + + D + Sbjct: 675 MRSQAKAVNFGIVYGISDYGLARDVKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDN 734 Query: 482 -------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------ 516 + ++ A+ + G+A +++K A +Q Sbjct: 735 GFVLTLFNRKRYVKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNL 794 Query: 517 ----VLQLWKDLTEGFACVVQEGGSISARR 542 +LQ+ +L ++ +R Sbjct: 795 KSKIILQVHDELLIEAPYEEKDIVKRIVKR 824 Score = 45.1 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R Y ++ N +Q + DI+ M + I+L VHDE++ E P Sbjct: 757 LRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKD 816 Query: 643 SVGTLCS 649 V + Sbjct: 817 IVKRIVK 823 >gi|256544867|ref|ZP_05472238.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] gi|256399366|gb|EEU12972.1| DNA polymerase I [Anaerococcus vaginalis ATCC 51170] Length = 893 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 102/543 (18%), Positives = 185/543 (34%), Gaps = 75/543 (13%) Query: 14 QPLPKVGVW----AYAEQAVITLCAY--AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67 + K GV+ + E I AY A K + +Y + + Sbjct: 324 DDIEKDGVFYFKSIFEEDNYIHSNAYKIAIKTSSSKTYIYNPDEKFVEKFKKYFEADNIK 383 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 V+ + E I+ LGI+I + T ++ S + FS+ K E Sbjct: 384 KVSFDIK-EDIVLFDKLGINISLP-YDDTMLMHYLIDPSRSSYDL---KTFSQAFLKY-E 437 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------ 181 + KG D N + + ++ L ++L LS Sbjct: 438 VENEEDLLGKGKSKKSYKDLDSDNLGKYLASIVNAIEDSLDI---LTQKLEELSMYDLYK 494 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G+ D + + K+++ ++ E L++ I +L + L Sbjct: 495 DCEIKLSKVLADMEITGFICDKNELEKIKDEVSLELGDLEKIIYELAGSEF-NINSPKQL 553 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L + I L +L E Sbjct: 554 SKILFEDLKLPIIKKTKTGYSTNAQVLEKLRKKHPIIEKIERYREMYKLKSTYLESLEEC 613 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DGR+R T + + TGR S QNLP + Sbjct: 614 IDEDGRIRSTFK-QNVTATGRLSSTEPNLQNLPIRT------------------------ 648 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R A +GK L+ AD + IE RVLA +A + +AF+ DI+ T ++ F+ Sbjct: 649 EEGRKIRKAFKADDGKVLIDADYSQIELRVLAHLANDKKMQEAFSKDIDIHTKTASEVFS 708 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE- 473 TPID+V+K QR+ K + + Y G ++ ++ + + Sbjct: 709 TPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRKRAKEYIENYLDTYPEIKKYMK 768 Query: 474 --------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + S + ++ A+ + GTA +++K A Sbjct: 769 DIVKKAKEDGYVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPIQGTAADIIKFAMINS 828 Query: 514 HQG 516 +Q Sbjct: 829 YQN 831 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 8/101 (7%) Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612 K+ + ++ ++ Y + + Y+ S+ R++G ++ N +Q + DI+ Sbjct: 764 KKYMKDIVKKAKEDGYVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPIQGTAADIIKF 823 Query: 613 GM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 M K IVL +HDEI+ E + Sbjct: 824 AMINSYQNLQKAKIDAKIVLQIHDEIIIEASKKDLEKAKEI 864 >gi|298694960|gb|ADI98182.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED133] Length = 876 Score = 235 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|331269049|ref|YP_004395541.1| DNA polymerase I [Clostridium botulinum BKT015925] gi|329125599|gb|AEB75544.1| DNA polymerase I [Clostridium botulinum BKT015925] Length = 881 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 80/510 (15%), Positives = 173/510 (33%), Gaps = 94/510 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 + + DE + ++H+ ++ +K DI +K + + +A PS + Sbjct: 380 IKKLFEDENIKKISHDIKNIYVILRKY---DIDAKNFSFDTKIAAYLLQPSKSDYILRDI 436 Query: 117 NFSEHLTKMEEGKALIA---RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + + E +C I ++ +++ +LF Sbjct: 437 ILEKLSINIHESDEESKIKETYCIKEIYEKLQKEIKSANME--ELFYN------------ 482 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 E L + ++ G++ID D + ++ E + + L+++I + D Sbjct: 483 ---------VELPLVKVLASMECEGFKIDKDRLTEIGEKFKVKIETLEKEIHEFADEDF- 532 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L LF + ++ ++ T +L + I+ + Sbjct: 533 NIKSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDSHPIISKIIEYRQITKLDST 592 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + DG++ + + TGR S QN+P + Sbjct: 593 YVEGLKHVIDEDGKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY---------------- 635 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + +N + ++ AD + IE RVLA IA ++ I AF + +DI+ Sbjct: 636 --------EMGREIRKVFVPNNEESVIFSADYSQIELRVLAHIANDEKLIDAFKHHKDIH 687 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQN 465 T ++ F ID+V+ R+ K + + Y GA K + + Sbjct: 688 TITASEVFKVHIDEVTPLMRSNAKAVNFGIVYGIGAFSLSKDINVSRKEAKEYIDTYFSR 747 Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + D + +S + ++ A+ + G+A + Sbjct: 748 YPNVKKYIDEIISKAEQDGFVTTIMNRKRYIPEVQSRNKIVRSFGERLAMNTPIQGSAAD 807 Query: 505 LVKKAW----------RAKHQGVLQLWKDL 524 ++K A K +LQ+ +L Sbjct: 808 VIKLAMVHVYEELIKRNLKSTLILQVHDEL 837 >gi|312127509|ref|YP_003992383.1| DNA polymerase i [Caldicellulosiruptor hydrothermalis 108] gi|311777528|gb|ADQ07014.1| DNA polymerase I [Caldicellulosiruptor hydrothermalis 108] Length = 850 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 72/402 (17%), Positives = 139/402 (34%), Gaps = 65/402 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + ER L + + G+++D D +L+ + I + KL+ I ++ + Sbjct: 449 YENIERPLIPVLYEMEKTGFKVDRDALLQYTKEIENKILKLETQIYQIAGEWF-NINSPK 507 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + ++ ++ T +L LIL+ + L Sbjct: 508 QLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLL 567 Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +A++ GR+ T G + TGR + QN+P + Sbjct: 568 QAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY--------------------- 605 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ Sbjct: 606 ---DEGKLIRKVFVPEEGHVLIDADYSQIELRILAHISEDERLINAFKNNIDIHSQTAAE 662 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F I V+ E R+ K + + Y G A+ K + ++ + Sbjct: 663 VFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKE 722 Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D + +S + + A+ + G+A +++K A Sbjct: 723 YLDNIVRFARENGYVLTLFNRKRYVKDIKSANRNARSYAERIAMNSPIQGSAADIMKLAM 782 Query: 511 RAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 +Q +LQ+ +L ++ +R Sbjct: 783 IKVYQKLKENNLKSKIILQVHDELLIEAPYEEKDIVKRIVKR 824 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 11/147 (7%) Query: 511 RAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 +A + G++ D + ++ + + V V + L Sbjct: 680 KAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLDNIVRFARENGYVLT 739 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GY 622 + K Y+ S R+Y ++ N +Q + DI+ M + Sbjct: 740 LFNRK---RYVKDIKSANRNARSYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKS 796 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS 649 I+L VHDE++ E P V + Sbjct: 797 KIILQVHDELLIEAPYEEKDIVKRIVK 823 >gi|15924680|ref|NP_372214.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|15927268|ref|NP_374801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|148268170|ref|YP_001247113.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|150394237|ref|YP_001316912.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156980007|ref|YP_001442266.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|253317166|ref|ZP_04840379.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006474|ref|ZP_05145075.2| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794075|ref|ZP_05643054.1| DNA polymerase I [Staphylococcus aureus A9781] gi|258415779|ref|ZP_05682050.1| DNA polymerase I [Staphylococcus aureus A9763] gi|258421984|ref|ZP_05684904.1| DNA polymerase I [Staphylococcus aureus A9719] gi|258438258|ref|ZP_05689542.1| DNA polymerase I [Staphylococcus aureus A9299] gi|258443716|ref|ZP_05692055.1| DNA polymerase I [Staphylococcus aureus A8115] gi|258445927|ref|ZP_05694103.1| DNA polymerase I [Staphylococcus aureus A6300] gi|258448392|ref|ZP_05696509.1| DNA polymerase I [Staphylococcus aureus A6224] gi|258454127|ref|ZP_05702098.1| DNA polymerase I [Staphylococcus aureus A5937] gi|269203308|ref|YP_003282577.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282893185|ref|ZP_06301419.1| DNA polymerase I [Staphylococcus aureus A8117] gi|295406000|ref|ZP_06815808.1| DNA polymerase I [Staphylococcus aureus A8819] gi|296274883|ref|ZP_06857390.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MR1] gi|297245074|ref|ZP_06928951.1| DNA polymerase I [Staphylococcus aureus A8796] gi|13701486|dbj|BAB42780.1| DNA polymerase I [Staphylococcus aureus subsp. aureus N315] gi|14247462|dbj|BAB57852.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu50] gi|147741239|gb|ABQ49537.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH9] gi|149946689|gb|ABR52625.1| DNA polymerase I [Staphylococcus aureus subsp. aureus JH1] gi|156722142|dbj|BAF78559.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Mu3] gi|257788047|gb|EEV26387.1| DNA polymerase I [Staphylococcus aureus A9781] gi|257839372|gb|EEV63845.1| DNA polymerase I [Staphylococcus aureus A9763] gi|257842028|gb|EEV66457.1| DNA polymerase I [Staphylococcus aureus A9719] gi|257848302|gb|EEV72293.1| DNA polymerase I [Staphylococcus aureus A9299] gi|257851122|gb|EEV75065.1| DNA polymerase I [Staphylococcus aureus A8115] gi|257855169|gb|EEV78108.1| DNA polymerase I [Staphylococcus aureus A6300] gi|257858360|gb|EEV81245.1| DNA polymerase I [Staphylococcus aureus A6224] gi|257863579|gb|EEV86336.1| DNA polymerase I [Staphylococcus aureus A5937] gi|262075598|gb|ACY11571.1| DNA polymerase I [Staphylococcus aureus subsp. aureus ED98] gi|282764503|gb|EFC04629.1| DNA polymerase I [Staphylococcus aureus A8117] gi|285817373|gb|ADC37860.1| DNA polymerase I [Staphylococcus aureus 04-02981] gi|294968997|gb|EFG45018.1| DNA polymerase I [Staphylococcus aureus A8819] gi|297178154|gb|EFH37402.1| DNA polymerase I [Staphylococcus aureus A8796] gi|312830068|emb|CBX34910.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130676|gb|EFT86662.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS03] gi|329727254|gb|EGG63710.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21172] Length = 876 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|222529430|ref|YP_002573312.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] gi|226693519|sp|Q59156|DPO1_ANATD RecName: Full=DNA polymerase I; Short=Pol I gi|222456277|gb|ACM60539.1| DNA polymerase I [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 69/384 (17%), Positives = 134/384 (34%), Gaps = 65/384 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + ER L + + G+++D D +++ + I + KL+ I ++ + Sbjct: 449 YENIERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWF-NINSPK 507 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + ++ ++ T +L LIL+ + L Sbjct: 508 QLSYILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLL 567 Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +A++ GR+ T G + TGR + QN+P + Sbjct: 568 QAINPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY--------------------- 605 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ Sbjct: 606 ---DEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAE 662 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F I V+ E R+ K + + Y G A+ K + ++ + Sbjct: 663 VFGVDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKE 722 Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D + + ++ A+ + G+A +++K A Sbjct: 723 YLDNTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAM 782 Query: 511 RAKHQG----------VLQLWKDL 524 +Q +LQ+ +L Sbjct: 783 IKVYQKLKENNLKSKIILQVHDEL 806 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 11/147 (7%) Query: 511 RAKHQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV 569 +A + G++ D + ++ + + V V + L Sbjct: 680 KAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLDNTVKFARDNGFVLT 739 Query: 570 YSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GY 622 + K Y+ S R Y ++ N +Q + DI+ M + Sbjct: 740 LFNRK---RYIKDIKSTNRNLRGYAERIAMNSPIQGSAADIMKLAMIKVYQKLKENNLKS 796 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCS 649 I+L VHDE++ E P V + Sbjct: 797 KIILQVHDELLIEAPYEEKDIVKEIVK 823 >gi|282927820|ref|ZP_06335431.1| DNA polymerase I [Staphylococcus aureus A10102] gi|282590330|gb|EFB95409.1| DNA polymerase I [Staphylococcus aureus A10102] Length = 876 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|326803837|ref|YP_004321655.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] gi|326651542|gb|AEA01725.1| DNA-directed DNA polymerase [Aerococcus urinae ACS-120-V-Col10a] Length = 888 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 79/509 (15%), Positives = 168/509 (33%), Gaps = 75/509 (14%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-- 103 D +S ++ D V +++ +++ K G+ + + ++A Sbjct: 361 DLVRES---QAFKNWIEDPHAKKVLYDAKRSQVILK---GLGMDLEGVSDDVLIASYLIH 414 Query: 104 --GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 L + N N +L E + + YD A L Sbjct: 415 ARDLSGDVANVAREFNLD-YLAYDSEVYGKGKKVAVPEDKTRLYDHLVAKVSVINDLLPI 473 Query: 162 YCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 R + + EL++++ E L + + G +D ++ L + ++ +L Sbjct: 474 IKDRLEADEMVELYRKI------ELPLAQVLAKMEIMGISVDRSRLVGLSQSYEEQLDQL 527 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL----AKD 276 E+I + + T L LF G+ ++ + S + +L D Sbjct: 528 QEEIYREAGVEF-NINSTQQLSKVLFEDMGLKGGKKTKSG-NYSTAQSELEKLQGVPIID 585 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 LIL + + + + + DG++ + TGR S QN+P + Sbjct: 586 LILAYRQLAKLQSTYVQGILDYIHQDGKVHSRF-IQTLTTTGRLSSADPNLQNIPIRT-- 642 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGE 395 +R + S + +D + IE RVLA ++G+ Sbjct: 643 ----------------------EEGRKIRQAFVPSHPDWVIFSSDYSQIELRVLAHVSGD 680 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 +AF +DI+ T AK F+ +SK++R K + + Y G ++ Sbjct: 681 PHLQEAFKENKDIHTATAAKVFHKDEKDISKDERRQAKAVNFGIVYGISDYGLSQNLSIS 740 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYP 490 + ++ + + + D ++ + ++ Sbjct: 741 RQEAKAFIDKYFEIYPKVAEYMDKSVEIAREAGYAKTLFNRRRYLPDLKAKNYNVRSFAE 800 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +++K A Q + + Sbjct: 801 RTAMNSPIQGTAADIIKVAMVEMDQALKE 829 Score = 41.3 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 18/126 (14%), Positives = 42/126 (33%), Gaps = 10/126 (7%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + + V + V I + + + YL ++ Sbjct: 739 ISRQEAKAFIDKYFEIYPKVAEYMDKSVEIAREAGYAKTLFNRR---RYLPDLKAKNYNV 795 Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 R++ + N +Q + DI+ M + +++L VHDE++ E Sbjct: 796 RSFAERTAMNSPIQGTAADIIKVAMVEMDQALKEHQLQANLLLQVHDELIFEVAKEDLED 855 Query: 644 VGTLCS 649 + L Sbjct: 856 LAALVK 861 >gi|170077895|ref|YP_001734533.1| DNA polymerase I [Synechococcus sp. PCC 7002] gi|169885564|gb|ACA99277.1| DNA-directed DNA polymerase I [Synechococcus sp. PCC 7002] Length = 973 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 122/684 (17%), Positives = 213/684 (31%), Gaps = 148/684 (21%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRT-------EQSAMPS 55 D ET L +G C + D + E++ + Sbjct: 385 DTETTGLDPREVDLVGIG------------CCWGRDPGNIAYIPIAHHNGNQLEKTQIFQ 432 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L E V N+ F+R +F I + ++LA L +K+ Sbjct: 433 ALKPILETEKYPKVFQNAKFDRAIFAHQ---GISLAGVVFDTMLASYV-LHPEMKHNLTD 488 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L+ + L K D ++ + EYC DV T + + Sbjct: 489 LSL----------RYLGNIIAKSYKDLGLTKKQTIADLEI-SVAAEYCGLDVYTTYLVCQ 537 Query: 176 RL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +L P L E L + + + G RID D + +L E + + L+ Sbjct: 538 KLKVELKDYPDLEKLLEKVETPLEPVLCAMENTGIRIDQDYLQQLAEELGADLTDLEIKA 597 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 D + L LF G++ + +H+ + +L D + Sbjct: 598 YNAADERF-NLNSPKQLGEILFEKLGLNTKKTRKTKTGYSTNHAVLEKLQGDHPIIDYIL 656 Query: 285 SGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L VS R+ + TGR S QN+P + Sbjct: 657 EYRTLAKLKSTYIDALPTLVSPKTDRIHTDFN-QTLTSTGRLSSSNPNLQNIPVRT---- 711 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 S +R I LV AD + IE R+L ++ E Sbjct: 712 --------------------EFSQRIRRAFIPKENWVLVAADYSQIELRILTHLSQEPIL 751 Query: 399 IKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 ++A+ GED++ T F+ V+ +R IGK++ + Y GA+ F A G+ Sbjct: 752 LQAYQAGEDVHRVTAQMIFDRDSPQAVTAAERRIGKIINFGVIYGMGAQRF---AREAGV 808 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ + D+ ++ + K Q + Sbjct: 809 SKEEGRAFI-----------------------------DRYHERYAKVFEYLELVKKQAI 839 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 Q G+ + + R + ++ D + S Y+D Sbjct: 840 AQ-------GYVSTILQRR----RNFDFISNCLIELKGSDPKAIDLDSLDYAYNDA---- 884 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIV 633 QL+R +Q S DI+ M + Y ++L VHDE+V Sbjct: 885 --------QLLRAAANAP------IQGSSADIIKVAMIQIHELLKDYQARLLLQVHDELV 930 Query: 634 SETPDTPYFSV-GTLCSLMTKNPS 656 E P + + + + M + Sbjct: 931 FEMPPEEWEELGSKIKTTMEQAVP 954 >gi|154249057|ref|YP_001409882.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] gi|154152993|gb|ABS60225.1| DNA polymerase I [Fervidobacterium nodosum Rt17-B1] Length = 898 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 100/581 (17%), Positives = 189/581 (32%), Gaps = 106/581 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSA--MPSD--- 56 K+ +D+ET S P I + A D+ A +P + Sbjct: 325 KKIALDLETTSLDPFEG----------KIVGISIAVDEGKAFYIPIAHVGAKNIPIESVK 374 Query: 57 -LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L+ L + HN F+ + LGI+ + + + A P+ K Sbjct: 375 KFLRDLFNSGKTVGGHNIKFDLKFISR-LGIEPQIPSF-DSMIEAYLLN-PNEKKFNLDE 431 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L+ KM + L+ + + + + + D + + + Sbjct: 432 LSLKLLGHKMISYEDLVK--DTIPLFAGDFSYIPVDTAVKYS------CEDADMSLRIHN 483 Query: 176 RLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L PL E + L+ + G D+ + L + + ++ L I Sbjct: 484 LLHPLIYSNEMNELYEKIELPMILVLANLELNGVYFDIQYLNNLSQEMDKKLLALSNRIF 543 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 ++T + L LF + V + T + LA + + +L Sbjct: 544 EITGEAF-NLNSPKQLGYILFEKLKLPSVKST-STGAYSTDVEVLEYLANEYEIAKLILE 601 Query: 286 GSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 I KL + + V+ + R+ + G + TGR S QNLP + Sbjct: 602 YRKIQKLKSTYVDAIPNMVNKNTKRVHASFNQTG-TATGRLSSSDPNLQNLPGRS----- 655 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + +G ++ AD + IE RVLA I + Sbjct: 656 -------------------DEGKEIRMAVKPQKDGWYILGADYSQIELRVLAHITEDPNL 696 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I AF +DI++ T K F + +++ R IGK++ A+ Y G AK Sbjct: 697 INAFKENKDIHLETAKKLFGVSEEFITENMRRIGKMVNFAIVYGVSPYGLAKRTGLDVKD 756 Query: 455 CGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFA 493 ++ + K+ + D Q S ++ + A Sbjct: 757 TKKMIEAYLDYYKNVQEYMANIKEFAKKNGYVRTMFGRKRDIPQINSKDQNIRAEGERIA 816 Query: 494 VKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + + G+A +++K A + + +LQ+ +L Sbjct: 817 INTPIQGSAADIMKIAMIRIYERLKDEKLQSMMILQVHDEL 857 >gi|323440766|gb|EGA98475.1| DNA polymerase I [Staphylococcus aureus O11] gi|323442921|gb|EGB00544.1| DNA polymerase I [Staphylococcus aureus O46] Length = 876 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|148239953|ref|YP_001225340.1| DNA polymerase I [Synechococcus sp. WH 7803] gi|147848492|emb|CAK24043.1| DNA polymerase I [Synechococcus sp. WH 7803] Length = 996 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 113/649 (17%), Positives = 200/649 (30%), Gaps = 144/649 (22%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNG 104 + L +L + N+ ++R++ + + +D ++ + + Sbjct: 448 EVVLEQLAPWLSSPSHPKALQNAKYDRLILLRHGLVLGGVVMDTLLADYLRDAAAKHSLD 507 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + FS+ + K ++GKA P D YC Sbjct: 508 GMAERDYGITPTLFSDLVGKAKDGKA-------SCFAEVPSD-----------QAALYCA 549 Query: 165 RDVEATRELF-----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 DV TR L ++L L D E L + + G RIDL + L + Sbjct: 550 MDVHLTRRLAIDLRQQLQASGEQLTNLLDQVELPLEPVLALMEATGIRIDLSYLDTLSKE 609 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + +L+ D + + L LF G+D + + + Sbjct: 610 MGETLTRLEADAKQAAGVDFNLA-SPKQLGELLFETLGLDRKKSRRTKTGYSTDATVLDK 668 Query: 273 LAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQ 326 LA D + L + KL + L + V + GR+ + TGR S Sbjct: 669 LADDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPN 727 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + S +R + L+ AD + IE Sbjct: 728 LQNIPVRT------------------------EYSRRIRKAFLPQEHWTLLSADYSQIEL 763 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+L ++GE+ +A+ +G+D++ T D VS ++R +GK + + Y GA+ Sbjct: 764 RILTHLSGEEVLQQAYRDGDDVHALTARLL--LEKDDVSADERRLGKTINFGVIYGMGAQ 821 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 FA + + T + Sbjct: 822 --------------------------------------------RFARETGVSQTDAKEF 837 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 +R ++ V + + RR + R + R Sbjct: 838 LSKYRERYPKVFAFLELQERLALSRGYVETIMGRRRPFHFDRNGL-------------GR 884 Query: 567 RLVYS--DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 L ++ D + +Q +R +Q S DI+ M Sbjct: 885 LLGKDPFEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQLQAALQQH 938 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666 ++L VHDE+V E + V L S M K +PL AE Sbjct: 939 SLPARLLLQVHDELVLEVEPSALDDVKALVVSTMEKAVE--LSVPLVAE 985 >gi|331084997|ref|ZP_08334084.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408697|gb|EGG88162.1| hypothetical protein HMPREF0987_00387 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 870 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 125/365 (34%), Gaps = 54/365 (14%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + G R++ + + E + + +L+++I + L Sbjct: 473 IEMPLLFTLFAMEQAGVRVEAEALRFYGEQLGTKIVELEKEIYAQAGEAF-NINSPKQLG 531 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 + LF + ++ T +L + IL + + L+ + Sbjct: 532 VILFEKLKLPHGKKTKTGYSTAADVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYI 591 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 +DGR+ G + TGR S QN+P Sbjct: 592 CADGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------VRME 626 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I G V AD + IE R+LA +G+ I A+ +DI+ T ++ F+T Sbjct: 627 LGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHT 686 Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 P D+V++ QR K + + Y G ++ + ++ + F D Sbjct: 687 PFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRYFETYPGIKKFLDD 746 Query: 476 EQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAWRAKH 514 A + + +MQ + A+ + GTA +++K A H Sbjct: 747 TVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGTAADVMKIAMIGVH 806 Query: 515 QGVLQ 519 + + + Sbjct: 807 RELTE 811 >gi|220904332|ref|YP_002479644.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868631|gb|ACL48966.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 921 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 77/371 (20%), Positives = 127/371 (34%), Gaps = 63/371 (16%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 EL++ L E L + + RG ID + L + + Sbjct: 514 ELYESL------ELPLTPILADMERRGIAIDAAAFESFLSDVQGRLDTLTAAVYEAAGRE 567 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI-----LNRLASSG 286 + R L LF + ++G ++ S + +LA L Sbjct: 568 F-NIRSAQQLGDVLFSTLELPSPRKTKGG-QASTSQDTLEKLAGRHPVVDSVLEFRKLEK 625 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L+ L + +GR+ T A+ TGR S QN+P Sbjct: 626 MRSTYLDPLPRLMDGNGRIHTTFN-QKATATGRLSSSNPNLQNIP--------------- 669 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 G +R+C IA+ G LV AD + +E RVLA ++ + ++AF NGE Sbjct: 670 ---------VRGDLGKRMRTCFIANPGSALVSADYSQVELRVLAHMSQDKALLEAFRNGE 720 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQF 462 DI+ T A ++ D+VS +QR K + L Y GA+ K S + ++ Sbjct: 721 DIHARTAALVYDLAPDQVSPDQRRNAKTINFGLIYGMGAQKLGQDLKISTSEAKEFIARY 780 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGT 501 + F D +A + A+ + G+ Sbjct: 781 FSRLTGLKEFYDSVEATAKRQGYVTTLGGRRRLLPDIHSPNGQAYALARRQAINTVIQGS 840 Query: 502 ACELVKKAWRA 512 A +++K A A Sbjct: 841 AADIIKLAMLA 851 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 598 TENIVQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650 ++Q + DI+ M ++ ++L VHDE++ E P+ + + L Sbjct: 833 INTVIQGSAADIIKLAMLAVAEDEQLREHEARLLLQVHDELLLEVPEASARAAGARVADL 892 Query: 651 MTKNPS 656 M+ Sbjct: 893 MSSVKP 898 >gi|29839896|ref|NP_829002.1| DNA polymerase I [Chlamydophila caviae GPIC] gi|29834243|gb|AAP04880.1| DNA polymerase I [Chlamydophila caviae GPIC] Length = 869 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 92/514 (17%), Positives = 175/514 (34%), Gaps = 66/514 (12%) Query: 28 AVITLCAYAW-DDEPVKLWDRTEQ-SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 +TL A D+ V D + + L + R E +N + K G Sbjct: 324 PSLTLMGVALASDDDVYYVDIEHALDDVLTPLQYFFRREDTTFYGYNIKRDNHALKNA-G 382 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 I + + +A L L N +++ L + + S P Sbjct: 383 IHVHN--------IALDLALAEHLINGGAKISYQTLLMDHGLVSSAGRYGKEWGQLSLPI 434 Query: 146 DCTRANHVQAWQLFGEYC---KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 + AN Q + F + K+ + ++ + E L + TI G +D Sbjct: 435 AKSPANPAQYFGGFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLEKVLFTIERNGMPLD 494 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 ++ + +L+ ++++E L +DI L + + L L+ G+ +D + T Sbjct: 495 VEDLQELERILSEELAMLTDDIYTLAGAPF-NIKSPKQLSEVLYNKLGLKPIDKARSTKA 553 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWS 321 +L + + IL A + L V R+ T G + TGR + Sbjct: 554 EVLEALSGEHEIIEKILAFRAVEKLLSTYVKALPRQVDPSTSRIHPTFNQMG-TVTGRLA 612 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVAD 380 QN+P + +R + AD Sbjct: 613 CQDPNLQNIPIRSER------------------------GRLLRKAFCNTHQNNYFLSAD 648 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R LA ++ ++ AF + EDI+ T ++ F+ P+++V+K+QR K + + Sbjct: 649 YSQIELRFLAHLSQDESLKLAFESREDIHTFTASQVFHVPLEEVTKQQRMQAKTVNFGII 708 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------- 480 Y G +K+ K S + + + F + +++ Sbjct: 709 YGQQAYGLSKILKISVSEAQKLIDAYFDRYPEVARFINETVSQACENLRVKTLLGRERII 768 Query: 481 ----HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + AV ++ G+A EL+K A Sbjct: 769 DNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAM 802 >gi|325661247|ref|ZP_08149874.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472754|gb|EGC75965.1| hypothetical protein HMPREF0490_00607 [Lachnospiraceae bacterium 4_1_37FAA] Length = 870 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 65/365 (17%), Positives = 125/365 (34%), Gaps = 54/365 (14%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + G R++ + + E + + +L+++I + L Sbjct: 473 IEMPLLFTLFAMEQAGVRVEAEALRLYGEQLGTKIVELEKEIYAQAGEAF-NINSPKQLG 531 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 + LF + ++ T +L + IL + + L+ + Sbjct: 532 VILFEKLRLPHGKKTKTGYSTAADVLDKLAPEYPVVEKILEYRQLTKLKSTYADGLANYI 591 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 +DGR+ G + TGR S QN+P Sbjct: 592 CADGRIHGKFN-QTITATGRISSTEPNLQNIP------------------------VRME 626 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I G V AD + IE R+LA +G+ I A+ +DI+ T ++ F+T Sbjct: 627 LGRLIRKVFIPEEGYVFVDADYSQIELRILAHCSGDQELIHAYREAKDIHRITASQVFHT 686 Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 P D+V++ QR K + + Y G ++ + ++ + F D Sbjct: 687 PFDEVTELQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASEYIDRYFETYPGIKKFLDD 746 Query: 476 EQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAWRAKH 514 A + + +MQ + A+ + GTA +++K A H Sbjct: 747 TVAHAKEMGYVVTLFGRRRPVPELASSNFMQRSFGERVAMNAPIQGTAADVMKIAMIGVH 806 Query: 515 QGVLQ 519 + + + Sbjct: 807 RELTE 811 >gi|148544471|ref|YP_001271841.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|184153836|ref|YP_001842177.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227363101|ref|ZP_03847236.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|325682793|ref|ZP_08162309.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] gi|148531505|gb|ABQ83504.1| DNA polymerase I [Lactobacillus reuteri DSM 20016] gi|183225180|dbj|BAG25697.1| DNA-directed DNA polymerase I [Lactobacillus reuteri JCM 1112] gi|227071819|gb|EEI10107.1| DNA polymerase I [Lactobacillus reuteri MM2-3] gi|324977143|gb|EGC14094.1| DNA-directed DNA polymerase I [Lactobacillus reuteri MM4-1A] Length = 888 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 85/527 (16%), Positives = 176/527 (33%), Gaps = 88/527 (16%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103 D ++ L L+ ++V N+ +I+ LGI + + +LA Sbjct: 358 VDLLKEEP----LKDLLQSDSVKKNVFNAK-AQIVGLHRLGIPL--ENINFDLLLASYLL 410 Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLF 159 + L + + EE + KG+ + P D T +H+ Sbjct: 411 NTNDNSNDLGQVAQEHGYD-DVRTDEEV------YGKGAKRAVPDDDETFFSHLATKARA 463 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 E ++D+ A + K+ +D E L + + G +D + + + + + Sbjct: 464 IEQLRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSE 523 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 ++ I + + T L LF + ++ ++ + + + +LA + Sbjct: 524 IESQIYQEAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVD--VLEKLADKSPI 580 Query: 280 NRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I KL + L + + S+ + T ++TGR S QN+P Sbjct: 581 VEQILEYRQIAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP--- 637 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393 +R + S G ++ +D + +E RVLA I Sbjct: 638 ---------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHIT 676 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVF 448 G+ + F NGEDI+ +T + F+ D ++ + R K + + Y G A+ Sbjct: 677 GDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDYGLAQRI 736 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QD 487 + +Q + + + A + + Sbjct: 737 HVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYLPDIHAKSFNKRS 796 Query: 488 QYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + G+A +++K A K + +LQ+ +L Sbjct: 797 FAERTAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHDEL 843 Score = 40.5 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M K ++L +HDE+V E P + L Sbjct: 807 IQGSAADIIKIAMIRMQDELEKRHLKAKMILQIHDELVFEAPKEEIPVLSELV 859 >gi|194333337|ref|YP_002015197.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] gi|194311155|gb|ACF45550.1| DNA polymerase I [Prosthecochloris aestuarii DSM 271] Length = 950 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 88/555 (15%), Positives = 165/555 (29%), Gaps = 105/555 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSD----LL 58 +D ET S L + +P + + P L Sbjct: 380 ALDTETTS------------LNTFEAELVGISISVKPQEAVFIYCSPEGLKPEKALSILK 427 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 L + + N ++ ++ K GI + + T + + + LA Sbjct: 428 PVLENPAIEKWGQNLKYDILVLKNY-GIQLAPTGF-DTMLASYVINPEETHNLDDLAQRH 485 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF---- 174 ++ T + C + P + Y +D + L Sbjct: 486 LQYRT------TTYSELCGTGKKAVPLR------QVPLEALKNYACQDADIALRLQNTLE 533 Query: 175 KRLIPLSDGER-------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 K+L + E L + + RG +D + K +A L E I Sbjct: 534 KQLKDNQELEWLCRNIEFPLVNVLVAMEYRGISLDTKHLEKTATKVASLTADLKERIYA- 592 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 T G + L LF G+ ++ + + +LA + + Sbjct: 593 TAGSTFNIDSPKQLGEILFTRLGLPAKKTTK--TGYSTNVQVLEELAMIHPIAQDILEYR 650 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL L + ++ G+L + + + TGR S QN+P + Sbjct: 651 SLQKLRSTYIEALPKILNPATGKLHTSFNQH-ITATGRLSSSNPNLQNIPIRT------- 702 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIK 400 +R IAS + + AD + IE R+ A ++G+ I+ Sbjct: 703 -----------------ELGKEIRKAFIASTNRNFLLSADYSQIELRIAAELSGDKKLIE 745 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF N EDI+ T F+T + V+ + R K + + Y G + Sbjct: 746 AFRNQEDIHAATAKAIFDT--EDVTSDMRRKAKEVNFGVLYGIQPYGLSMRLNISQKEAK 803 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + + D S + ++ A+ Sbjct: 804 AIIDTYKSKYPGLFEALDALVRQAAENGFVTTLLGRRRYIAALNSRNGNIRKAAERAAMN 863 Query: 496 DKLIGTACELVKKAW 510 + GTA +++K A Sbjct: 864 TPVQGTAADIIKYAM 878 >gi|157149813|ref|YP_001449466.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] gi|157074607|gb|ABV09290.1| DNA polymerase I [Streptococcus gordonii str. Challis substr. CH1] Length = 880 Score = 234 bits (597), Expect = 3e-59, Method: Composition-based stats. Identities = 78/492 (15%), Positives = 162/492 (32%), Gaps = 79/492 (16%) Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161 LP++ +A LA + + E + + + + D + + QLF E Sbjct: 390 LPAATFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF-E 447 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + R V+ E + + L + E+ L + + G +++ + + +Q Sbjct: 448 HLARKVQVLLETEEPMQEQLRSHDQLDLLFEMEQPLAFVLAKMEIAGIKVERETLQGMQA 507 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + L ++I L + L LF G+ L + + + Sbjct: 508 ENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLE 566 Query: 272 QLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 +LA + I KL + L EA+++DG++ ++TGR S Sbjct: 567 RLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPN 625 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385 QN+P +R + L+ +D + IE Sbjct: 626 LQNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIE 661 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ-- 442 RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + + Y Sbjct: 662 LRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGIS 721 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAE 479 G A +Q + + + + Sbjct: 722 DFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDIN 781 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQ 533 S + +++ A+ + G+A +++K A + + ++ + + V Sbjct: 782 SRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVP 841 Query: 534 EGGSISARRVAN 545 + R++ Sbjct: 842 NDELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|209360706|gb|ACI43005.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 167/493 (33%), Gaps = 62/493 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + + +L DET ++ + K GI++ +LA P+ Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 A+ + + E + A + KG+ S P + T A H+ +R Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ L E+ L + + G ++D + ++ +A++ +++ I +L Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYEL 523 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ T +L + IL+ Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + V D G++ ++TGR S QN+P + Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G + AD + IE RVLA IA +D I+AF Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++++ + + + + S + ++ A+ Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTP 797 Query: 498 LIGTACELVKKAW 510 + G+A +++KKA Sbjct: 798 IQGSAADIIKKAM 810 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A KR + ++ +++ Y Y TS+ R++ + Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERT 792 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 N +Q + DI+ + M + ++L VHDE++ E P + L Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852 Query: 650 LMTKNPS 656 +M + Sbjct: 853 VMEQAVE 859 >gi|291460329|ref|ZP_06599719.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] gi|291417084|gb|EFE90803.1| DNA polymerase I [Oribacterium sp. oral taxon 078 str. F0262] Length = 867 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 67/376 (17%), Positives = 131/376 (34%), Gaps = 62/376 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 REL++ + E L + + G +D + +L + ++ ++ E I + Sbjct: 463 ERELYR------EIELPLVFTLHEMEESGILVDREALLSYGAELREKIGEIRERIYREAG 516 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH-SNITQLAKDLILNRLASS 285 + L LF G+ ++ T +L S QLA D++ R S Sbjct: 517 EEF-NLNSPQQLGQILFEKLGLPGGRKTKTGYSTAADVLEKLSEENQLASDILEYRTYSK 575 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L + DGR+ G + TGR S QN+P + Sbjct: 576 LNST-YAEGLLSWIREDGRIHGHFN-QMVTATGRISSTDPNLQNIPIRT----------- 622 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 R I G + AD + +E R+LA ++G++ I+A+ N Sbjct: 623 -------------EMGRRFRRVFIPKEGSIFIDADYSQVELRILAALSGDEKLIRAYQNA 669 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 +DI+ T ++ F+ P+ +V+ + R K + + Y G ++ +++ Sbjct: 670 DDIHAVTASEVFHVPLSEVTPQLRRNAKAVNFGIVYGISAFGLSEGLSISRQEAKEYIER 729 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIG 500 + + F D E + A+ + G Sbjct: 730 YFETYPGVKKFLDGEVELARKQGYVRTIFGRKRPVPDISSSNFARRSFGERVAMNSPIQG 789 Query: 501 TACELVKKAWRAKHQG 516 +A +++KKA + Sbjct: 790 SAADIMKKAMNEVSRA 805 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 11/130 (8%) Query: 529 ACVVQEGGSISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSD-VKGDCSYLNTAT 584 A + EG SIS + + K+ + + +R+ Y + G + + Sbjct: 709 AFGLSEGLSISRQEAKEYIERYFETYPGVKKFLDGEVELARKQGYVRTIFGRKRPVPDIS 768 Query: 585 SQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETP 637 S R++G ++ N +Q + DI+ + M ++ IVL VHDE++ ETP Sbjct: 769 SSNFARRSFGERVAMNSPIQGSAADIMKKAMNEVSRALKAGAFRARIVLQVHDELLLETP 828 Query: 638 DTPYFSVGTL 647 + V L Sbjct: 829 EKEADQVEEL 838 >gi|49483932|ref|YP_041156.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] gi|49242061|emb|CAG40760.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MRSA252] Length = 876 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 91/573 (15%), Positives = 194/573 (33%), Gaps = 72/573 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A+ + G+A +++K A Q + K+ T ++Q + + VP+ Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKM----KETTYQAKLLLQ----VHDELIFEVPKS 839 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V ++ ++ +L +K D SY T Sbjct: 840 EVDSFSEFVEEIMENALQLDVP-LKVDSSYGAT 871 >gi|299138180|ref|ZP_07031360.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] gi|298600110|gb|EFI56268.1| DNA polymerase I [Acidobacterium sp. MP5ACTX8] Length = 1022 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 69/377 (18%), Positives = 126/377 (33%), Gaps = 62/377 (16%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E++++L + L + + G R+D +L+ ++ +A L E I + Sbjct: 618 EVYEQL------DLPLVSVLLQMEQTGVRVDSNLLREMSSRLAVTIDDLAERIYASSGHR 671 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + L LF + + + LA+ + + + K Sbjct: 672 F-NINSPKQLGDVLFNKMDLPKPMKHGKGKVISTAQDILEDLAQHHEVPAIVLEYRQLQK 730 Query: 292 LNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 L + L +GR+ T G + TGR S QN+P + Sbjct: 731 LKSTYLDQLPSLTDVNGRIHTTFNQVG-TATGRLSSINPNLQNIPIRT------------ 777 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R+ IA+ G L+ AD + IE R++A + + + A+ G+ Sbjct: 778 ------------AVGREIRAAFIAAPGNLLMSADYSQIELRLMAHFSQDPLLLDAYRTGK 825 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T A+ F + KE RA K + + Y G A ++++ Sbjct: 826 DIHTLTAAEVFEVDAATMDKETRARAKAVNFGIVYGISPFGLAAQLGIDQKVAKAYIERY 885 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 K +TF + +S + + AV L GT Sbjct: 886 FDRYKGVATFIEQTLETVRRDQAVKTAFGRVRPIPDIQSRNPNQRGFAERTAVNTPLQGT 945 Query: 502 ACELVKKAWRAKHQGVL 518 A +L+K A + Sbjct: 946 AADLIKIAMLRIDAAIR 962 >gi|330444148|ref|YP_004377134.1| DNA polymerase I [Chlamydophila pecorum E58] gi|328807258|gb|AEB41431.1| DNA polymerase I [Chlamydophila pecorum E58] Length = 878 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 100/573 (17%), Positives = 193/573 (33%), Gaps = 91/573 (15%) Query: 38 DDEPVKLWDRTEQSAMPSDLLQYL----RDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 D V + ++ P +LL+ L E + +N + + I Sbjct: 344 DGNRVVYVELKQR---PEELLEILCKFFSREDLSFYGYNIKRDLHALRNA---GIVIYNV 397 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 C LA + + + +L S A+ AR+ K + Sbjct: 398 SCDLALAEHL-IHGGARTSFQSLLVSHGWA------AVAARYVKEWGHHALPLVQLPENP 450 Query: 154 QAW----QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + + K + + + + E L + ++ G +D ++ L Sbjct: 451 EKYFGELVALLPQIKESLLEELQKKQLTDVFFNLEMPLEHVLFSMERNGMPLDSKKLVSL 510 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS--- 266 + + Q+ L E+I L + + L L+ GI +D ++ T +L Sbjct: 511 EHSLEQDLAILTEEIYTLAGEPF-NIKSPKQLANILYNKLGITPLDKAKSTRAEVLEALR 569 Query: 267 --HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 H I +L L +L S+ + L V+ R+ T + G + TGR + Sbjct: 570 EEHKIIEKLLMFRALEKLLSTY-----VKALPRQVAPQTQRIHATFEQMG-TATGRLACR 623 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI-IASNGKKLVVADLA 382 QN+P++ L R + + AD + Sbjct: 624 DPNLQNIPKRSSRGLSL------------------------REAFLVPCETVSFLAADYS 659 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+LA ++ ++ + AF GEDI+ T ++ F+ P+D+V+K+QR K + + Y Sbjct: 660 QIELRLLAHLSQDEVLLHAFHQGEDIHAFTASQVFSVPLDQVTKQQRMYAKTVNFGIIYG 719 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------------ 480 G +K+ K S +Q + + + F + A + Sbjct: 720 QQAYGLSKILKIPLSEAQELIQAYFERYSGVARFVEETIAAASHDLKVTTMLGRERVIDN 779 Query: 481 --HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 H ++ AV ++ G+A EL+K A + + + + I Sbjct: 780 WDEHPGIRASSGRLAVNTRIQGSAAELIKCAMLEISKEI--------QDRKLQSRMLLQI 831 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + VP M+ V + ++ L Sbjct: 832 HDELIFEVPDGEMQEMCALVQEKMEAAMTLTVP 864 >gi|123968848|ref|YP_001009706.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] gi|123198958|gb|ABM70599.1| DNA polymerase I [Prochlorococcus marinus str. AS9601] Length = 976 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 99/611 (16%), Positives = 186/611 (30%), Gaps = 107/611 (17%) Query: 5 FIDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVK-LWDRTEQSAMPSDLLQ 59 +D ET S L +G+ E L + K D+ + S L Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEENDD--LFYIPLGHQTKKETPDQLSIEDVFSKLRN 441 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---- 115 ++ D NS F+R +F + K ++LA Sbjct: 442 WIEDPKKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSEISFRL 498 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 F K GK F S + ++F E ++ + +LF+ Sbjct: 499 FGFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKESFSKEKDELIKLFE 558 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E L + + G ID+ + KL + + + ++ + +L D S Sbjct: 559 ------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELADESFNLS 612 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 L LF +D + + +L + + + + KL Sbjct: 613 -SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLSKLLST 671 Query: 293 --NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++ GR+ A+ TGR S QN+P + Sbjct: 672 YIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT--------------- 715 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 S +R + KL+ AD + IE R+LA +A E+ I AF +DI+ Sbjct: 716 ---------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIH 766 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQN 465 T F +++S ++R +GK + + Y G K F L ++ + Sbjct: 767 SLTARLIFEK--EEISSDERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLIKYKER 824 Query: 466 VKSTSTFEDWEQ---------------------------------------AESHHLWMQ 486 F + ++ + M+ Sbjct: 825 YSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLLGKDPYEIDLQAARRAGME 884 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGG 536 Q A + G++ +++K A ++ +LQ+ +L E Sbjct: 885 AQSLRAAANAPIQGSSADIIKIAMVQLNKKFTEMNVPAKMLLQVHDELLFEVEPDSLEIT 944 Query: 537 SISARRVANVP 547 + ++ Sbjct: 945 TKLVKKTMEDC 955 >gi|87198303|ref|YP_495560.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] gi|87133984|gb|ABD24726.1| DNA polymerase I [Novosphingobium aromaticivorans DSM 12444] Length = 945 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 102/577 (17%), Positives = 178/577 (30%), Gaps = 112/577 (19%) Query: 2 SKLFIDIETRS----PQPLPKVGVWAYAEQAVITLCAYA----WDDEPVKLWDRTEQSAM 53 + ID ET + L V + A + + ++P+++ DR E A Sbjct: 358 RVVAIDTETSALDAMRADLVGVSLALGPNDACYIPLGHGGSDMFAEKPLQV-DRAEALAA 416 Query: 54 PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR-----TNGLPSS 108 L L + V+ V N ++ + + GI + GL Sbjct: 417 LKPL---LESDAVLKVGQNIKYDLNILARQ-GIMVSPIDDTMVMSFCLDAGRSETGLAGH 472 Query: 109 LKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + + K +E GK I+ + P D TR Y Sbjct: 473 GMDELSERHLLHTTMKFKELCGTGKKAISF-----AEVPLADATR------------YAA 515 Query: 165 RDVEATRELFKRLIPLSDGE----------RDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 D + T L + P GE R L + + G ++D + + L A Sbjct: 516 EDADVTWRLHRLFQPRLAGEGGTRIYQKVDRPLIPVVAMMERNGIKVDRERLSGLSTEFA 575 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + +L+ I + L LF T + S + LA Sbjct: 576 AQIARLEGVIHEKCGMSFTI-GSPKQLGEVLFDKL-GYKGGKKGKTGQYSTDQSVLEGLA 633 Query: 275 KD------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 L+L S + L A++ GR+ + GA +TGR S Sbjct: 634 AQGAEVATLVLEWRQLSKLKSTYTDALQAAINPHTGRVHTSYSLVGA-QTGRLSSNEPNL 692 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P + +R +A G L+ AD + IE R Sbjct: 693 QNIPIRT------------------------EIGRQIRDAFVAEPGNVLLAADYSQIELR 728 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----G 443 + A +A +AFA GEDI+ T + F T V ++ R K + A+ Y G Sbjct: 729 LAAHMADVPALKEAFAAGEDIHARTAMEMFGT----VDRDTRGRAKTINFAILYGISRWG 784 Query: 444 GAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482 A + ++ + + + + S + Sbjct: 785 LGGRLGVSADEAQAMIDRYFERFPGIQRYIHETLESVRERGYSETLFGRKTWFPRISSKN 844 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A+ + GT+ +++K+A + + Sbjct: 845 QAERQGSERAAINAPIQGTSADIIKRAMARMMPALTE 881 >gi|300856524|ref|YP_003781508.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] gi|300436639|gb|ADK16406.1| DNA polymerase I [Clostridium ljungdahlii DSM 13528] Length = 876 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 84/502 (16%), Positives = 166/502 (33%), Gaps = 74/502 (14%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 D+ LFE K + + L A Sbjct: 366 EDKNKAVELFKLLFENEGISKVGYDVKVPCSILYKMGIRF---LKLEFDIKIAAYLIDSS 422 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS 181 + E K +I ++ I V +++ E K+ EA E + L + Sbjct: 423 RS-DYELKDIIRQYTGVEISEDDEKFFSKETVLFSKVYSELTKKIEEAHME--ELLYKV- 478 Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + ++ G+++D D +++ + E K+ ++I L++ + L Sbjct: 479 --EQPLIYVLASMECEGFKVDKDKLVEQEGKFKIEIDKVQKEIYSLSEEEF-NINSPKQL 535 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + ++ ++ T +L + I+ + + L Sbjct: 536 GKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIVEKIIYYRQLTKLYSTYIEGLKAV 595 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + D ++ + + TGR S QN+P + Sbjct: 596 IQEDDKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------ 630 Query: 359 LASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + ++ AD + IE RVLA IA ++ I AF N DI+ T ++ F Sbjct: 631 EMGKEIRKIFVPENEDCVILSADYSQIELRVLAHIADDENLISAFINHSDIHTKTASEVF 690 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 PID+V+ QR+ K + + Y G AK K L + + + + Sbjct: 691 KVPIDEVTSAQRSNAKAVNFGIVYGIGDFSLAKNLKISRKEAKLYIDTYFERYPKVKLYM 750 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 D + +S + ++ A+ + G+A +++K A Sbjct: 751 DDIVKEAKVNSYVTTLMNRRRFIPEIKSSNKIVRSFGERLAMNTPIQGSAADIIKIAMVN 810 Query: 513 KHQG----------VLQLWKDL 524 ++ +LQ+ +L Sbjct: 811 VYRRLEENKLKSKLILQVHDEL 832 >gi|322807338|emb|CBZ04912.1| DNA polymerase I [Clostridium botulinum H04402 065] Length = 875 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 84/583 (14%), Positives = 183/583 (31%), Gaps = 105/583 (18%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCA-------YAWDDEPVKLWDRT-----EQSAMPSDLL 58 L + Y E I L + YA + V D + Sbjct: 321 YKENDL-----YLYFELEDIVLFSKSRVKTLYANFKDEVYKIDFEMLLNNTKEQFIEVCK 375 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + + + + +++ R + +K + I LA P + +L Sbjct: 376 EIFESKEIKKITYDAKNPRTILRK---LGIEFNGIEFDINLAAYLIDPVRKEYEISSLAS 432 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + F + + +++ E K +++ + L Sbjct: 433 EYLFKNINR----EDEFLRIKEVNIM--------PNLYKVLEEKIK-----EQDMEELLY 475 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + E+ L + G+++D D++L+L++ E + +I +++ + Sbjct: 476 KV---EQPLTETLSAMETEGFKVDKDILLQLEKKFKGEIESTQLEIYSMSEEEF-NINSP 531 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF + ++ ++ T +L D I + + L Sbjct: 532 KQLGKILFEKLDLPVIKKTKTGYSTNAEVLDKLRDKHPIIDKITYYRQLTKIYSTYIEGL 591 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A+ DG++ + TGR S QN+P + Sbjct: 592 KAAIDEDGKIHSNFN-QTVTATGRLSSTEPNLQNIPIKY--------------------- 629 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R I + G ++ AD + IE RVLA I+ + I AF +DI+ T + Sbjct: 630 ---EMGREIRKVFIPNTGDSVILSADYSQIELRVLAHISDDKNMISAFNEHDDIHTKTAS 686 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 + F PI++V+ R K + + Y G ++ + + + + Sbjct: 687 EVFKVPIEEVTPLMRGNAKAVNFGIVYGIGDFSLSQDLNITRKEAKQYIDAYLERYPNVK 746 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ +S + ++ A+ + G+A +++K A Sbjct: 747 LYLENIVEEAIEKGYVSTILNRRRYIKEVKSSNKIVKAAGERLAMNSPIQGSAADIIKLA 806 Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 H+ +LQ+ +L E ++ Sbjct: 807 MVNVHRKLKEDNFKSSIILQVHDELILNVHKDELEKIKALVKK 849 >gi|257425805|ref|ZP_05602229.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257428471|ref|ZP_05604869.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257431105|ref|ZP_05607482.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257433788|ref|ZP_05610146.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257436704|ref|ZP_05612748.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282904261|ref|ZP_06312149.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|282906086|ref|ZP_06313941.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282914486|ref|ZP_06322272.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282924832|ref|ZP_06332498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|283958441|ref|ZP_06375892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|293503564|ref|ZP_06667411.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|293510579|ref|ZP_06669284.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|293537121|ref|ZP_06671801.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|295428261|ref|ZP_06820890.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590776|ref|ZP_06949414.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|257271499|gb|EEV03645.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 55/2053] gi|257275312|gb|EEV06799.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 65-1322] gi|257278053|gb|EEV08701.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 68-397] gi|257281881|gb|EEV12018.1| DNA polymerase I [Staphylococcus aureus subsp. aureus E1410] gi|257284055|gb|EEV14178.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M876] gi|282313198|gb|EFB43594.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C101] gi|282321667|gb|EFB51992.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M899] gi|282331378|gb|EFB60892.1| DNA polymerase I [Staphylococcus aureus subsp. aureus Btn1260] gi|282595879|gb|EFC00843.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C160] gi|283790590|gb|EFC29407.1| DNA polymerase I [Staphylococcus aureus subsp. aureus A017934/97] gi|290919966|gb|EFD97034.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M1015] gi|291095230|gb|EFE25495.1| DNA polymerase I [Staphylococcus aureus subsp. aureus 58-424] gi|291466470|gb|EFF08991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus M809] gi|295127661|gb|EFG57298.1| DNA polymerase I [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575662|gb|EFH94378.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus MN8] gi|315195594|gb|EFU25981.1| DNA polymerase I [Staphylococcus aureus subsp. aureus CGS00] Length = 876 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 >gi|258424106|ref|ZP_05686988.1| DNA polymerase I [Staphylococcus aureus A9635] gi|257845727|gb|EEV69759.1| DNA polymerase I [Staphylococcus aureus A9635] Length = 876 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|266624221|ref|ZP_06117156.1| DNA polymerase I [Clostridium hathewayi DSM 13479] gi|288863943|gb|EFC96241.1| DNA polymerase I [Clostridium hathewayi DSM 13479] Length = 598 Score = 234 bits (596), Expect = 4e-59, Method: Composition-based stats. Identities = 71/392 (18%), Positives = 139/392 (35%), Gaps = 60/392 (15%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 +D E L + G + + + + + + + L++ I + T + Sbjct: 199 TDIEMPLIYSLFHMEQVGIKAERVRLKEYGDRLKVQIAVLEQKIYEETGETF-NINSPKQ 257 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----L 295 L LF + ++ + + +LA D + ++ + KLN+ L Sbjct: 258 LGEVLFDHMKLPNGKKTKSG--YSTAADVLDKLAPDYPVVQMILDYRQLTKLNSTYAEGL 315 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + D R+ GT + TGR S QN+P Sbjct: 316 AVYIGPDERIHGTFN-QTITATGRISSTEPNLQNIP------------------------ 350 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + +G + AD + IE RVLA ++G++ I A+ + EDI+ T ++ Sbjct: 351 VRMELGREIRKIFVPEDGYVFIDADYSQIELRVLAHMSGDERLIGAYRHAEDIHAITASE 410 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+TP+D+V+ QR K + + Y G ++ + ++ + Sbjct: 411 VFHTPLDEVTPLQRRNAKAVNFGIVYGISSFGLSEGLSISRKEATEYINKYFETYPGVKE 470 Query: 472 FEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAW 510 F D A++ +MQ + A+ + GTA +++K A Sbjct: 471 FLDRLVADAKETGYAVSMFGRRRPVPELKSANFMQRSFGERVAMNSPIQGTAADIMKIAM 530 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + + K L V + I R+ Sbjct: 531 IRVDRALKA--KGLKSRIVLQVHDELLIETRK 560 >gi|209360704|gb|ACI43004.1| DNA polymerase I [Geobacillus anatolicus] Length = 878 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 167/493 (33%), Gaps = 62/493 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + + +L DET ++ + K GI++ +LA P+ Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 A+ + + E + A + KG+ S P + T A H+ +R Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ L E+ L + + G ++D + ++ +A++ +++ I +L Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYEL 523 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ T +L + IL+ Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + V D G++ ++TGR S QN+P + Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G + AD + IE RVLA IA +D I+AF Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++++ + + + + S + ++ A+ Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTP 797 Query: 498 LIGTACELVKKAW 510 + G+A +++KKA Sbjct: 798 IQGSAADIIKKAM 810 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A KR + ++ +++ Y Y TS+ R++ + Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERT 792 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 N +Q + DI+ + M + ++L VHDE++ E P + L Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852 Query: 650 LMTKNPS 656 +M + Sbjct: 853 VMEQAVE 859 >gi|72161593|ref|YP_289250.1| DNA polymerase I [Thermobifida fusca YX] gi|71915325|gb|AAZ55227.1| DNA polymerase A [Thermobifida fusca YX] Length = 929 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 167/555 (30%), Gaps = 66/555 (11%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLG 85 I A A D T+ L L D V H + Sbjct: 375 DGDIIRLALAVPSGRAVCLDPTQLDPADEAALTAWLADPAYPKVLHGVK---WALRALWA 431 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + +A P L ++ E A A+ + Sbjct: 432 RGWTLDGVESDTAIAAYLLEPGRRNFELATLCLRYLGRELTEHNAEGAQLTLDLEGTGDD 491 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 T + L ++A + L L + E L + + D G DL Sbjct: 492 QDTARRELALRALATVELALALDAELTRREGLDLLHNLELPLAEVLARMEDAGIAADLTY 551 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + L+ A ++ ++ +L + L+ LF G+ + + Sbjct: 552 LRDLEAEFAAAVRQAVDEAHRLVGREF-NLGSPKQLQQILFDELGLPKTKRIKTGYTTDA 610 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 D L + KL T L + ++ DGR+ T + TGR S Sbjct: 611 DALAWLAAQTDNELPVILLRHRDQTKLRTTVEGLIKTIAEDGRIHTTF-HQTVTATGRLS 669 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + A +R + G + L+ AD Sbjct: 670 SAEPNLQNIPVRT------------------------DAGRRIRRAFVVGEGYEQLLTAD 705 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++ ++ I+AF +G D + ++ F P+D+V E RA K M L Sbjct: 706 YSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPVDQVDGEARARIKAMNYGLA 765 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------- 481 Y G A+ + ++++ + + + + Sbjct: 766 YGLSDYGLAQQLGISPKEARVLMEEYFSHFGKVRDYLEAVVVRARREGYTATILGRRRYL 825 Query: 482 ------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFA 529 + ++ A+ + G+A +++K A + + ++ + + Sbjct: 826 PDLNSDNRQRREMAERMALNAPIQGSAADIIKLAMLRVDRALRENGLASRMLLQVHDELV 885 Query: 530 CVVQEGGSISARRVA 544 V G + R + Sbjct: 886 LEVAPGELDTVRELV 900 Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 89/274 (32%), Gaps = 23/274 (8%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK A I+ T + P + + G+ + A G + Sbjct: 642 EGLIKTIAEDGRIHTTFHQTVTATGRLSSAEPNLQNIPVRTDAGRRIRRAFVVGEGYEQL 701 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + + E + H + + V D++ G A +K Sbjct: 702 LT-ADYSQIELRIMAHLSEDEALIEAFHSGFDFHAQIASRVFRIPV-DQVDGEARARIKA 759 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + G+ D + + +R + +V+ + R Sbjct: 760 M----NYGLAYGLSDYGLAQQLGISPKEARVLMEEYFSHFGKVRDYLEA--VVVRARREG 813 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------G 621 + + G YL S + R ++ N +Q + DI+ M + Sbjct: 814 YTATILGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKLAMLRVDRALRENGLA 873 Query: 622 YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654 ++L VHDE+V E +V L M++ Sbjct: 874 SRMLLQVHDELVLEVAPGELDTVRELVVEHMSQA 907 >gi|282909001|ref|ZP_06316819.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] gi|282327265|gb|EFB57560.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WW2703/97] Length = 876 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 78/503 (15%), Positives = 167/503 (33%), Gaps = 63/503 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRA 512 A+ + G+A +++K A Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVK 810 >gi|110630020|gb|ABG80522.1| DNA polymerase I [Geobacillus anatolicus] gi|209360702|gb|ACI43003.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 167/493 (33%), Gaps = 62/493 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + + +L DET ++ + K GI++ +LA P+ Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 A+ + + E + A + KG+ S P + T A H+ +R Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ L E+ L + + G ++D + ++ +A++ +++ I +L Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYEL 523 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ T +L + IL+ Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + V D G++ ++TGR S QN+P + Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G + AD + IE RVLA IA +D I+AF Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++++ + + + + S + ++ A+ Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTP 797 Query: 498 LIGTACELVKKAW 510 + G+A +++KKA Sbjct: 798 IQGSAADIIKKAM 810 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A KR + ++ +++ Y Y TS+ R++ + Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERT 792 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 N +Q + DI+ + M + ++L VHDE++ E P + L Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852 Query: 650 LMTKNPS 656 +M + Sbjct: 853 VMEQAVE 859 >gi|282916950|ref|ZP_06324708.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] gi|282319437|gb|EFB49789.1| DNA polymerase I [Staphylococcus aureus subsp. aureus D139] Length = 876 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GENHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|209360708|gb|ACI43006.1| DNA polymerase I [Anoxybacillus sp. NB] Length = 878 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 167/493 (33%), Gaps = 62/493 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + + +L DET ++ + K GI++ +LA P+ Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 A+ + + E + A + KG+ S P + T A H+ +R Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ L E+ L + + G ++D + ++ +A++ +++ I +L Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYEL 523 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ T +L + IL+ Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + V D G++ ++TGR S QN+P + Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G + AD + IE RVLA IA +D I+AF Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++++ + + + + S + ++ A+ Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERTAMNTP 797 Query: 498 LIGTACELVKKAW 510 + G+A +++KKA Sbjct: 798 IQGSAADIIKKAM 810 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 44/127 (34%), Gaps = 9/127 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A KR + ++ +++ Y Y TS+ R++ + Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYFPDITSRNFNVRSFAERT 792 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 N +Q + DI+ + M + ++L VHDE++ E P + L Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852 Query: 650 LMTKNPS 656 +M + Sbjct: 853 VMEQAVE 859 >gi|33863427|ref|NP_894987.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] gi|33640876|emb|CAE21332.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9313] Length = 986 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 109/618 (17%), Positives = 192/618 (31%), Gaps = 142/618 (22%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L N+ ++R++ + + + + ++LA L + L + Sbjct: 453 LASNDHPKALQNAKYDRLILLRH---GLALEGVVMDTLLADY--LRDAAAKHGLEVMAER 507 Query: 121 HLTKMEEGKALI----ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF-- 174 G + + F +I + YC DV TR L Sbjct: 508 EFKITPTGFSELVGKGQTFADVAIPTA----------------SLYCGMDVHLTRRLAIR 551 Query: 175 ---------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +L+PL + E+ L + + G RIDL + +L + +KL++ Sbjct: 552 LRAQLENMGAQLLPLLEQVEQPLEPVLALMEATGIRIDLPYLKELSIELGNTLEKLEQQA 611 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + + L LF G++ + + +L D + L Sbjct: 612 QEAAGVNFNLA-SPKQLGELLFETLGLNRKKSRRTKTGWSTDANVLEKLEADHPVVPLVL 670 Query: 285 SGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L + V S GR+ + TGR S QN+P + Sbjct: 671 EHRVLSKLRSTYVDALPQLVESETGRVHTDFN-QAVTATGRLSSSNPNLQNIPIRT---- 725 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 S +R + KL+ AD + IE R+L ++GE+ Sbjct: 726 --------------------EFSRRIRKAFLPQENWKLLSADYSQIELRILTHLSGEEVL 765 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD 458 +AF NG+D++ T + D+VS+++R +GK + + Y GA+ F + Sbjct: 766 QEAFRNGDDVHALTARLLLDK--DEVSEDERRLGKTINFGVIYGMGAQRFSRSTGLSQAE 823 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + F K Q + + A+ + T Sbjct: 824 AKDFLSRYK---------QRYAKVFTFLELQERLALSKGYVETLL--------------- 859 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS--DVKGD 576 RR + R + R L D+ D Sbjct: 860 --------------------GRRRPFHFDRNGL-------------GRLLGKDPMDIDLD 886 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYD--IVLTVHD 630 + +Q +R +Q S DI+ M + T ++L VHD Sbjct: 887 VARRGGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQQQLTAADLPARLLLQVHD 940 Query: 631 EIVSETPDTPYFSVGTLC 648 E+V E T V L Sbjct: 941 ELVLEVDPTALEDVQQLV 958 >gi|298242591|ref|ZP_06966398.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] gi|297555645|gb|EFH89509.1| DNA polymerase I [Ktedonobacter racemifer DSM 44963] Length = 1041 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 105/631 (16%), Positives = 195/631 (30%), Gaps = 106/631 (16%) Query: 3 KLFIDIETRSPQ----PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMP--- 54 D ET S L VG+ ++A AY D E + +P Sbjct: 455 HFAFDTETTSEDQRKADL--VGL-SFAMAPGE---AYYIPVGHTTTVDGQEPGTQLPLSH 508 Query: 55 --SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 L D ++ HN+ ++ + L I + S+LA P Sbjct: 509 VLVQLKPIFEDASIGKYMHNAKYDIAVM---LRYGIQVEGLSFDSMLAAYLIEPGRRGLG 565 Query: 113 CLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 F M LI K S+ P +Y D + T Sbjct: 566 LKEQAFQRLSILMTPITELIGSGSKIISMAQVPIR-----------RAADYAGSDADMTL 614 Query: 172 EL----------FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 L L E L + + G +D + + + E + ++ +K + Sbjct: 615 RLVVPLHKDLQKHNLLDLFYRLEMPLIKVLMQMELYGVALDAEFLHEFGEQLNEQLRKAE 674 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278 + I + L LF+ + ++ ++ + A D + Sbjct: 675 QTIYDAVGHHF-NVNSPKQLGEVLFVELKLPAGKKTKTGYSVSADVIENLRGMHPAIDSL 733 Query: 279 LNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L S ++ L + GR+ + AS +GR S QN+P + Sbjct: 734 LEYRQLSKLKSTYIDGLQTLMDRQTGRVYTSFNQTIAS-SGRLSSSNPNLQNIPVRT--- 789 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA L+ AD + IE R+LA I E Sbjct: 790 ---------------------ELGRQIRRAFIADPSYVLLTADYSQIELRILANITNEPR 828 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAKVFKTMA-S 453 ++AF GEDI+ T A F+ P+++V+++QR + K + A+ Y G M Sbjct: 829 LVEAFNQGEDIHTITAASLFSVPVEEVTRDQRRLAKTVVYAVLYGQSAYGLSQVTGMRPG 888 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEF 492 ++++ + + + + ++ + Sbjct: 889 DAADFIKRYHETFPNIKVYVESTLEQARRQGYVNTCFGRKRFIPDMRVLSHVERQALERE 948 Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 AV + G+ +L+K A K + +LQ+ +L E + Sbjct: 949 AVNMPIQGSNADLIKVAMLRLQHAFLQNGMKTRMILQVHDELVFEVPVEELERAKRIVKA 1008 Query: 543 VANVPRLVMRRHKRDVHIVLPSSRRLVYSDV 573 V ++ K + + + S + ++ Sbjct: 1009 VMEGIGALLVPQKVPIKVDMKSGKNWFAAEP 1039 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + D++ M G +L VHDE+V E P + Sbjct: 954 IQGSNADLIKVAMLRLQHAFLQNGMKTRMILQVHDELVFEVPVEELERAKRIVK 1007 >gi|242242956|ref|ZP_04797401.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] gi|242233557|gb|EES35869.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144] Length = 876 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 80/524 (15%), Positives = 171/524 (32%), Gaps = 65/524 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + + + + + +L+++L D+ + +++ + LGI+I Sbjct: 332 AILKFGFYTNHQ--HVVINADDVKNYKNLVRWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + S+ + + + ++ K I F KG P + Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVGLYGQNYVKDN-----ITVFGKGKKHHIPEES 442 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + +++ E + ++ L D E L + + + G D++ + Sbjct: 443 ILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 502 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ I ++ L +I + + L + LF + ++ ++ T + Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L D IL S + L + +S D R+ A +TGR S Sbjct: 562 LEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSVD 620 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P + +R S ++ AD + Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA I ++ AF NG DI+ T K FN D+V R K + + Y Sbjct: 657 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478 G ++ + + + + Sbjct: 717 SDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A + + + Sbjct: 777 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820 Score = 40.5 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M TK ++L VHDE++ E P + + +M + Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855 >gi|225548253|ref|ZP_03769538.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] gi|225040593|gb|EEG50839.1| hypothetical protein RUMHYD_00233 [Blautia hydrogenotrophica DSM 10507] Length = 878 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 85/542 (15%), Positives = 175/542 (32%), Gaps = 86/542 (15%) Query: 19 VGVWAYAEQAVITLCAYAWDDEP---VKLWDRTEQSAMPSDLLQYLRDE--TVMCVAHNS 73 VGV +AE+ + A A E V++ YL D+ V + Sbjct: 323 VGVQIFAEEGDLLGVAIAVSREEIYYVEVSGFVSGE--------YLADKLAQVAKQTQIA 374 Query: 74 LFERILFKKTLGIDIPSKRWICT--SVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131 F + K + + + W T + +A P + + + Sbjct: 375 AFHVKVLLKYVNV----ETWTQTFGAEVAAYLLNPLKTAYDYEDIGKEYLGQIFPGRQEV 430 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK----RLIPLSDGERDL 187 + + KG D+ + + + + L + R+ + E L Sbjct: 431 VGK--KGDKDALAEKPEEMKRLGCFMAYVALAVK-APLEEALREAGMERIF--QEIEMPL 485 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 ++ G +++ + + E + +L++ I + L LF Sbjct: 486 VFTLNSMEKEGIQVEGEALRVYGEQLQVRIGELEKQICGQAGEDF-NINSPKQLGAILFE 544 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSD 302 + ++ + + +LA + R + KL + L+ + D Sbjct: 545 KMKLPGGKKTKTG--YSTAADVLDKLAPKHPIVRDILEYRQLTKLKSTYADGLAGYIGED 602 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ T + TGR S QN+P + Sbjct: 603 GRIHSTF-HQTITATGRISSTEPNLQNIPIR------------------------MELGR 637 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+TP + Sbjct: 638 LIRKVFVPREGCIFLDADYSQIELRVLAHMSGDEKLIQAYREAQDIHRLTASQVFHTPFE 697 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---- 474 +V+ QR K + + Y G ++ ++++ F D Sbjct: 698 EVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAADYIERYFSTYPKIKGFLDGLVK 757 Query: 475 -----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + +S + + A+ + GTA +++K A + + Sbjct: 758 KGKEDGYVTTMFGRRRPIPELKSSNFMQRSFGERIAMNSPIQGTAADIIKIAMNRVYSRL 817 Query: 518 LQ 519 Q Sbjct: 818 RQ 819 >gi|124262437|gb|ABM97416.1| DNA polymerase I [Bacillus sp. G(2006)] Length = 876 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 172/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 349 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 406 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E ++ A + KG+ + P + A H+ W L + Sbjct: 407 VDDVAAAAKMKQY----EAVRSDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 462 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ E +A++ + +++ Sbjct: 463 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 517 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 518 IYELAGQEF-NINSPKQLGVILFEKLQLPILKKTKTGYSTSADVLEKLAPYHEIVENILH 576 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 577 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 629 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 630 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 672 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 673 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 732 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 733 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 792 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 793 NTPIQGSAADIIKKAMIDLN 812 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 744 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 745 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 804 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 805 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 847 >gi|283470957|emb|CAQ50168.1| DNA polymerase I (POL I) [Staphylococcus aureus subsp. aureus ST398] Length = 876 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 91/573 (15%), Positives = 194/573 (33%), Gaps = 72/573 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVAFITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + + S + ++ Sbjct: 728 TRKKAKVFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A+ + G+A +++K A Q + K+ T ++Q + + VP+ Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKM----KETTYQAKLLLQ----VHDELIFEVPKS 839 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V ++ ++ +L +K D SY T Sbjct: 840 EVDSFSEFVEEIMENALQLDVP-LKVDSSYGAT 871 Score = 46.7 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKVFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|283770754|ref|ZP_06343646.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] gi|283460901|gb|EFC07991.1| DNA polymerase I [Staphylococcus aureus subsp. aureus H19] Length = 876 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GENHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAIDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 KRTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAKRTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|38146965|gb|AAR11867.1| DNA polymerase I [Bacillus caldolyticus] Length = 878 Score = 233 bits (595), Expect = 5e-59, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 172/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 351 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 408 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E ++ A + KG+ + P + A H+ W L + Sbjct: 409 VDDVAAAAKMKQY----EAVRSDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 464 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ E +A++ + +++ Sbjct: 465 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 519 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 520 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 578 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 579 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 631 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 632 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 674 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 675 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 734 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 735 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 794 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 795 NTPIQGSAADIIKKAMIDLN 814 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 746 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 747 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 806 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 807 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 849 >gi|253734526|ref|ZP_04868691.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] gi|253727467|gb|EES96196.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TCH130] Length = 876 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 91/573 (15%), Positives = 193/573 (33%), Gaps = 72/573 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + +L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYVELVSWLENPNSKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A+ + G+A +++K A Q + K+ T ++Q + + VP+ Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKM----KETTYQAKLLLQ----VHDELIFEVPKS 839 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V ++ ++ +L +K D SY T Sbjct: 840 EVDSFSEFVEEIMENALQLDVP-LKVDSSYGAT 871 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|209360700|gb|ACI43002.1| DNA polymerase I [Geobacillus bogazici] Length = 878 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 166/493 (33%), Gaps = 62/493 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + + +L DET ++ + K GI++ +LA P+ Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 A+ + + E + A + KG+ S P + T A H+ +R Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ L E+ L + + G ++D + ++ +A++ +++ I +L Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAVEQRIYEL 523 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ T +L + IL+ Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + V D G++ ++TGR S QN+P + Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G + AD + IE RVLA IA +D I+AF Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 678 RRDLDIHTKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 ++++ + + + S + ++ A+ Sbjct: 738 IERYFASFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTP 797 Query: 498 LIGTACELVKKAW 510 + G+A +++KKA Sbjct: 798 IQGSAADIIKKAM 810 Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 12/85 (14%) Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 R++ ++ N +Q + DI+ + M + ++L VHDE++ E P Sbjct: 786 RSFAERMAMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEE--- 842 Query: 644 VGTLCSLMTKNPSWAKGL--PLKAE 666 + LC L+ + A L PLK + Sbjct: 843 MERLCRLVPEVMEQAVELRVPLKVD 867 >gi|209360698|gb|ACI43001.1| DNA polymerase I [Geobacillus kaue] Length = 878 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 166/493 (33%), Gaps = 62/493 (12%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 E + + +L DET ++ + K GI++ +LA P+ Sbjct: 350 AEMALADPQFVAWLADETKKKSMFDAKRASVALK-WKGIELR--GVAFDLLLAAYLLNPA 406 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 A+ + + E + A + KG+ S P + T A H+ +R Sbjct: 407 QDAGDVAAV---AKMKQYEAVRPDEAVYGKGAKRSLPDEPTLAEHLVRKAAAIWALERPF 463 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 ++ L E+ L + + G ++D + ++ +A++ +++ I +L Sbjct: 464 LDELRSNEQDELLIKLEQPLATILAEMEFTGVKVDTKRLEQMGSELAEQLGAIEQRIYEL 523 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ T +L + IL+ Sbjct: 524 AGQEF-NINSPKQLGIILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENILHYRQL 582 Query: 285 SGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L + V D G++ ++TGR S QN+P + Sbjct: 583 GKLQSTYIEGLLKVVHHDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---------- 631 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G + AD + IE RVLA IA +D I+AF Sbjct: 632 --------------LEEGRKIRQAFVPSEPGWLIFAADYSQIELRVLAHIADDDNLIEAF 677 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 678 RRDLDIHAKTAMDIFHVSEEEVTATMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEF 737 Query: 459 LQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDK 497 ++++ + + + S + ++ A+ Sbjct: 738 IERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTP 797 Query: 498 LIGTACELVKKAW 510 + G+A +++KKA Sbjct: 798 IQGSAADIIKKAM 810 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 9/127 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A KR + ++ +++ Y YL TS+ R++ + Sbjct: 733 EAAEFIERYFASFPGVKRYMETIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERT 792 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-S 649 N +Q + DI+ + M + ++L VHDE++ E P + L Sbjct: 793 AMNTPIQGSAADIIKKAMIDLAARLKEERLQARLLLQVHDELILEAPKEEMERLCQLVPE 852 Query: 650 LMTKNPS 656 +M + Sbjct: 853 VMEQAVE 859 >gi|194466653|ref|ZP_03072640.1| DNA polymerase I [Lactobacillus reuteri 100-23] gi|194453689|gb|EDX42586.1| DNA polymerase I [Lactobacillus reuteri 100-23] Length = 888 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 81/503 (16%), Positives = 169/503 (33%), Gaps = 78/503 (15%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103 D +++ L L+ ++V N+ +I+ LGI + + +LA Sbjct: 358 VDLLKEAP----LKDLLQSDSVKKNVFNAK-AQIVGLHRLGIPL--ENINFDLLLASYLL 410 Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLF 159 + L + + EE + KG+ + P D T +H+ Sbjct: 411 NTNDNSNDLGQVAQEHGYD-DVRTDEEV------YGKGAKRTVPDDDETFFSHLATKARA 463 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 E ++D+ A + K+ +D E L + + G +D + + + + + Sbjct: 464 IEQLRKDLFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSE 523 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 ++ I + + T L LF + ++ ++ + + + +LA + Sbjct: 524 IESQIYQEAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVD--VLEKLADKSPI 580 Query: 280 NRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I KL + L + + S+ + T ++TGR S QN+P Sbjct: 581 VEQILEYRQIAKLQSTYIAGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP--- 637 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393 +R + S G ++ +D + +E RVLA I Sbjct: 638 ---------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHIT 676 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVF 448 G+ + F NGEDI+ +T + F+ D ++ + R K + + Y G A+ Sbjct: 677 GDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDYGLAQRI 736 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QD 487 + +Q + + + A + + Sbjct: 737 HVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYLPDIHAKSFSKRS 796 Query: 488 QYPEFAVKDKLIGTACELVKKAW 510 A+ + G+A +++K A Sbjct: 797 FAERTAMNTPIQGSAADIIKIAM 819 >gi|21283362|ref|NP_646450.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49486516|ref|YP_043737.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57650561|ref|YP_186574.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87161466|ref|YP_494331.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195497|ref|YP_500301.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221795|ref|YP_001332617.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|161509904|ref|YP_001575563.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142560|ref|ZP_03567053.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732341|ref|ZP_04866506.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|258451796|ref|ZP_05699818.1| DNA polymerase I [Staphylococcus aureus A5948] gi|262052261|ref|ZP_06024466.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|282920230|ref|ZP_06327955.1| DNA polymerase I [Staphylococcus aureus A9765] gi|284024738|ref|ZP_06379136.1| DNA polymerase I superfamily protein [Staphylococcus aureus subsp. aureus 132] gi|294848711|ref|ZP_06789457.1| DNA polymerase I [Staphylococcus aureus A9754] gi|297207597|ref|ZP_06924032.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911679|ref|ZP_07129123.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|304380719|ref|ZP_07363388.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|6110605|gb|AAF03894.1|AF193842_1 DNA polymerase I [Staphylococcus aureus] gi|21204802|dbj|BAB95498.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MW2] gi|49244959|emb|CAG43420.1| DNA polymerase I [Staphylococcus aureus subsp. aureus MSSA476] gi|57284747|gb|AAW36841.1| DNA polymerase I [Staphylococcus aureus subsp. aureus COL] gi|87127440|gb|ABD21954.1| DNA polymerase I superfamily [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203055|gb|ABD30865.1| DNA polymerase I [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374595|dbj|BAF67855.1| DNA polymerase I [Staphylococcus aureus subsp. aureus str. Newman] gi|160368713|gb|ABX29684.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253723863|gb|EES92592.1| DNA polymerase I [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257860508|gb|EEV83334.1| DNA polymerase I [Staphylococcus aureus A5948] gi|259159862|gb|EEW44901.1| DNA polymerase I [Staphylococcus aureus 930918-3] gi|269941170|emb|CBI49557.1| DNA polymerase I [Staphylococcus aureus subsp. aureus TW20] gi|282594578|gb|EFB99563.1| DNA polymerase I [Staphylococcus aureus A9765] gi|294824737|gb|EFG41160.1| DNA polymerase I [Staphylococcus aureus A9754] gi|296887614|gb|EFH26512.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887100|gb|EFK82301.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH70] gi|302751516|gb|ADL65693.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340718|gb|EFM06649.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315198613|gb|EFU28941.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus CGS01] gi|320140432|gb|EFW32286.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA131] gi|320143970|gb|EFW35739.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus MRSA177] gi|329314362|gb|AEB88775.1| DNA polymerase I [Staphylococcus aureus subsp. aureus T0131] gi|329728334|gb|EGG64771.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21189] Length = 876 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 169/514 (32%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + +L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYVELVSWLENPNSKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|315222865|ref|ZP_07864749.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] gi|315188059|gb|EFU21790.1| DNA-directed DNA polymerase [Streptococcus anginosus F0211] Length = 881 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 65/449 (14%), Positives = 145/449 (32%), Gaps = 64/449 (14%) Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + KG+ + P +H+ ++ + +L L + E+ L + + Sbjct: 432 YGKGAKRALPEKAILLSHLARKVTVLVETEKPMTDLLRQHDQLNLLYEMEQPLAFVLAKM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +++ + + +Q + +L ++I L + L LF G+ Sbjct: 492 EIAGIKVERETLQTMQTENEEVLARLTQEIYDLAGEEF-NINSPKQLGGILFEKLGLPTS 550 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 + + + +LA + I K+ + L + + +DG++ Sbjct: 551 FTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQSTYVMGLQDWILADGKIHTRY 610 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P + +R + Sbjct: 611 -LQDLTQTGRLSSVDPNLQNIPIR------------------------LEQGRLIRKAFV 645 Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 L+ +D + IE RVLA I+G++ I+AF +G DI+ +T + F + V+ Sbjct: 646 PEWKDSVLLSSDYSQIELRVLAHISGDEHLIEAFRHGADIHTSTAMRVFGIEKPEDVTPN 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473 R K + + Y G A + + + + Sbjct: 706 DRRNAKAVNFGVVYGISDFGLANNLGISRKEAKSYIDTYFERYPGIKNYMENVVREARDK 765 Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV----- 517 + S + ++ A+ + G+A +++K A Q + Sbjct: 766 GYVETLFHRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIRLDQALTDGNF 825 Query: 518 -LQLWKDLTEGFACVVQEGGSISARRVAN 545 ++ + + V E + + + Sbjct: 826 KTRMLLQVHDEIVLEVPENELTAIKTLVK 854 >gi|307266790|ref|ZP_07548314.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918183|gb|EFN48433.1| DNA-directed DNA polymerase [Thermoanaerobacter wiegelii Rt8.B1] Length = 561 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 93/542 (17%), Positives = 187/542 (34%), Gaps = 87/542 (16%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I A+++ ++ V D + DL + E H + ++ GI+ Sbjct: 17 EIKKIAFSFGEDTVY-IDVFQIE----DLKEIFEKEEFEFTTHEIK-DFLVKLSYKGIEC 70 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDS 142 SK +I T+++A S + L + +G+ G Sbjct: 71 KSK-YIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIGEDIL 129 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y C+R H+ + ++ K L + E L + + + G+ +D Sbjct: 130 ADYICSRCVHLFDLREKLMNFIE----EMDMKKLL---LEIEMPLVEVLKLMEVSGFTLD 182 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +++ +L + I ++ + I K + L +LF + ++ ++ Sbjct: 183 KEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEKLNLPVIKKTKTGYS 241 Query: 260 TLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L + D+I R + ++ + + R+ + + TG Sbjct: 242 TDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMDENNRVHSNFK-QMVTATG 299 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +E +R I +V Sbjct: 300 RISSTEPNLQNIPIRE------------------------EFGRQIRRAFIPRTKDGYIV 335 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA ++G++ I++F N EDI++ T A+ F P++KV+ E R K + Sbjct: 336 SADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNF 395 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 + Y G ++ K + + + K + + Sbjct: 396 GIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRR 455 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK 522 + S + + Q A+ + G+A +++K A K Q +LQ+ Sbjct: 456 RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHD 515 Query: 523 DL 524 +L Sbjct: 516 EL 517 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 17/200 (8%) Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523 + S + + +H + F + + + TA E+ K + + K Sbjct: 333 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKA 392 Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR----DVHIVLPSSRRLVYSDVK 574 + G + + G IS + R+K IV + + + Sbjct: 393 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIM 452 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLT 627 Y+ S+ +R+ +L N +Q + DI+ M ++ ++L Sbjct: 453 NRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQ 512 Query: 628 VHDEIVSETPDTPYFSVGTL 647 VHDE+V +T V + Sbjct: 513 VHDELVVDTYKDEVEIVKKI 532 >gi|329733163|gb|EGG69500.1| DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus 21193] Length = 876 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 169/514 (32%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + +L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYVELVSWLENPNSKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIFTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|324996302|gb|EGC28210.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK678] Length = 880 Score = 233 bits (595), Expect = 6e-59, Method: Composition-based stats. Identities = 78/492 (15%), Positives = 162/492 (32%), Gaps = 79/492 (16%) Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161 LP++ +A LA + + E + + + + D + + QLF E Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF-E 447 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + R V+ E + + L + E+ L + + G +++ + + +Q Sbjct: 448 HLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQT 507 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + L ++I L + L LF G+ L + + + Sbjct: 508 ENEKTLESLTQEIYDLAGQEF-NINSPKQLGTVLFEDMGLPLEYTKKTKTGYSTAVDVLE 566 Query: 272 QLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 +LA + I KL + L EA+++DG++ ++TGR S Sbjct: 567 RLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPN 625 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385 QN+P +R + L+ +D + IE Sbjct: 626 LQNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIE 661 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ-- 442 RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + + Y Sbjct: 662 LRVLAHISKDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGIS 721 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAE 479 G A +Q + + + + Sbjct: 722 DFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDIN 781 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQ 533 S + +++ A+ + G+A +++K A + + ++ + + V Sbjct: 782 SRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVP 841 Query: 534 EGGSISARRVAN 545 + R++ Sbjct: 842 NDELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|328951917|ref|YP_004369251.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] gi|328452241|gb|AEB08070.1| DNA polymerase I [Desulfobacca acetoxidans DSM 11109] Length = 896 Score = 233 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 136/390 (34%), Gaps = 65/390 (16%) Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + W + ++ E L++ L E + + + RG R+DLD + + + Sbjct: 471 RLWPRLHQQLQQ--EKLLRLYEDL------ELPVLRVLAAMETRGIRVDLDFLQRFGREV 522 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 +E L+E+I ++ + L LF + ++G + +T L Sbjct: 523 EKELASLEEEIHEMAGEPF-LIQSPPQLAAILFDRLQLPTQKKTKGRTAYSTDNEVLTAL 581 Query: 274 AKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 A + + + KL + L + V GR+ T A+ TGR S Sbjct: 582 ADYHPIAAKVIAYRTLGKLKATYVDGLCKQVHPASGRIHTTFVQSVAA-TGRLSSRDPNL 640 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 QN+P G +R + S+G + D + IE R Sbjct: 641 QNIP------------------------VRGELGAQLRQAFLPSSGYIFISGDYSQIELR 676 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444 +LA + + ++AF GED++ T A+ F + VS+E R KV+ + Y Sbjct: 677 LLAHFSADPVLLQAFQEGEDVHRQTAAEVFGLHPELVSREMRRQAKVINFGIIYGMSAFG 736 Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482 AK + ++ + D S + Sbjct: 737 LAKQLNVSQRLAQDFINRYFARHTGVKRYFDQALDTARQKGWVTTLLGRRRPIPHLHSSN 796 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 ++ + A+ L G+A +L+KKA A Sbjct: 797 RNLRQEAERSALNTPLQGSAADLIKKAMLA 826 >gi|327463731|gb|EGF10047.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1057] Length = 880 Score = 233 bits (595), Expect = 7e-59, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 159/491 (32%), Gaps = 77/491 (15%) Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161 LP++ +A LA + + E + + + + D + + QLF Sbjct: 390 LPAAAFDARLAKYLLSTV-EDNELATIARLYGQTVLPTDDEVYGKGAKRALPEQEQLFEH 448 Query: 162 YCK---------RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 + ++ +L L + E+ L + + G +++ + + +Q Sbjct: 449 LARKIQVLLETEEPMQEQLRAHDQLDLLLEMEQPLAFVLAKMEIAGIKVERENLQGMQAE 508 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 + + L ++I L + L LF G+ L + + + + Sbjct: 509 NEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKTGYSTAVDVLER 567 Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 LA + I KL + L EA+++DG++ ++TGR S Sbjct: 568 LAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPNL 626 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEA 386 QN+P +R + L+ +D + IE Sbjct: 627 QNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIEL 662 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ--- 442 RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + + Y Sbjct: 663 RVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRNAKAVNFGVVYGISD 722 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAES 480 G A +Q + + + + S Sbjct: 723 FGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDINS 782 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQE 534 + +++ A+ + G+A +++K A + + ++ + + V Sbjct: 783 RNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPA 842 Query: 535 GGSISARRVAN 545 + R++ Sbjct: 843 DELTAVRQLVK 853 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IKLA--VPLVAD 869 >gi|327490470|gb|EGF22252.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK1058] Length = 880 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 74/505 (14%), Positives = 160/505 (31%), Gaps = 70/505 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++P+ + + LA+ + + + KG Sbjct: 381 VLLSHYGIELPAASF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + P H+ + ++ +L L + E+ L + + G Sbjct: 435 AKRALPEQEQLFEHLARKIQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + +Q + + L ++I L + L LF G+ L + Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + +LA + I KL + L EA+++DG++ Sbjct: 554 TKTGYSTAVDVLERLAPIASIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372 ++TGR S QN+P +R + Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K + + Y G A +Q + + + + Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIQTYFERFPGIKNYMETIVREARDKGYVE 768 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520 S + +++ A+ + G+A +++K A + + ++ Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 + + V + R++ Sbjct: 829 LLQVHDEIVLEVPNDELTAVRKLVK 853 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRKLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|91070002|gb|ABE10928.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC3046] Length = 976 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 90/556 (16%), Positives = 170/556 (30%), Gaps = 100/556 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L ++ D NS F+R +F + K ++LA Sbjct: 437 SKLRNWIEDPKKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSE 493 Query: 115 A----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 F L K GK F S + ++F E ++ + Sbjct: 494 ISFRLFGFKPPLFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKESFSKEKDEL 553 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +LF+ + E L + + G ID+ + KL + + + ++ + +L Sbjct: 554 IKLFE------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAGE 607 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 S L LF +D + + +L + + + + Sbjct: 608 NFNLS-SPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLS 666 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L ++ GR+ A+ TGR S QN+P + Sbjct: 667 KLLSTYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT---------- 715 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 S +R + KL+ AD + IE R+LA +A E+ I AF Sbjct: 716 --------------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHK 761 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQ 460 +DI+ T F +++S E+R +GK + + Y G K F L Sbjct: 762 NDDIHSLTARLIFEK--EEISSEERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLI 819 Query: 461 QFSQNVKSTSTFEDWEQ---------------------------------------AESH 481 ++ + F + ++ + Sbjct: 820 KYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSAR 879 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACV 531 M+ Q A + G++ +++K A ++ +LQ+ +L Sbjct: 880 RAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNIPAKMLLQVHDELLFEVEPD 939 Query: 532 VQEGGSISARRVANVP 547 E + ++ Sbjct: 940 SLEITTKLVKKTMEDC 955 >gi|221195745|ref|ZP_03568799.1| DNA polymerase I [Atopobium rimae ATCC 49626] gi|221184511|gb|EEE16904.1| DNA polymerase I [Atopobium rimae ATCC 49626] Length = 903 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 134/397 (33%), Gaps = 69/397 (17%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E K L E L + + RG +D + + + + + E I + Sbjct: 491 LEDDKSLELFETIEMGLLPVLAAMERRGLFVDPAKLAEQSKELGADIASRVERIHEAAGE 550 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE------GTLKSILSHSNIT-QLAKDLILNRLA 283 + L LF + G+ + + T +LS T Q+ D++ R Sbjct: 551 TF-NLDSPSQLSHVLFDVLGLPTFGLKKTRSGFYSTNAKVLSDLADTYQIVADVLEYRER 609 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L+ L + D R+ T A+ TGR S QN+P + Sbjct: 610 AKIKST-YLDALPALIRGDHRIHTTFNQTVAA-TGRLSSSDPNLQNIPTRS--------- 658 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 VR+ +G + D + IE R+LA ++G++ I AF Sbjct: 659 ---------------ELGHRVRTAFTVPSGHVFLACDYSQIELRLLAHLSGDEHLIAAFQ 703 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +G D + T ++ F P+++V+ E R+ K + + Y G A K + + Sbjct: 704 SGADFHAATASRTFGVPVEEVTPELRSRAKAVNFGIVYGQQAYGLATSLKIPRAEAQDMI 763 Query: 460 QQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVKDKL 498 ++ + D + H+ + A+ + Sbjct: 764 DRYFAAYPGVRAYLDESVRIAHEKGYAVTMYGRKRHIREFGQHNRQLIAFGERTAMNHPM 823 Query: 499 IGTACELVKKAWRAKHQG----------VLQLWKDLT 525 G+A +++K A + +LQ+ +L Sbjct: 824 QGSAADIIKIAMIRVEKRLRKEGCAAKLILQIHDELD 860 >gi|225181342|ref|ZP_03734786.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] gi|225167923|gb|EEG76730.1| DNA polymerase I [Dethiobacter alkaliphilus AHT 1] Length = 878 Score = 233 bits (594), Expect = 7e-59, Method: Composition-based stats. Identities = 71/421 (16%), Positives = 137/421 (32%), Gaps = 71/421 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D E L + G +DL + ++ + L+++I L + Sbjct: 473 YEDLELPLAYTLARMERTGVAVDLQALDAMKTEFRERIGALEQEIYSLAGEEF-NLNSPK 531 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK-----LNT 294 L LF G+ + ++ + +LA + ++K L Sbjct: 532 QLGQILFDKLGLPALKKTKTG--YSTDAKVLEELAPHHEVVAKILKYRTLIKILTTYLEG 589 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 LS+ V+ GR+ + TGR S QN+P + Sbjct: 590 LSKLVNEQTGRIHTHFN-QTVTATGRLSSTEPNLQNIPIR-------------------- 628 Query: 354 ADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 VR + G L+ AD + IE R+LA ++ + I +F EDI+ T Sbjct: 629 ----LEEGRRVRRAFVPGKKGNLLLSADYSQIELRILAHVSKDPVLIDSFRKEEDIHRRT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 A+ F + V+ E R K + + Y G ++ K + ++ + + Sbjct: 685 AAEVFGVLPEDVTPELRDRAKAVNFGIVYGISDYGLSQQLKIPRQEAKEYISRYFERLPG 744 Query: 469 TSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 F + + + A+ + GTA +++K Sbjct: 745 VRDFIHNVVEDAKKNGYVTTLLNRRRYLPDINAKNFNQRSFAERTAMNTPIQGTAADIIK 804 Query: 508 KAWRA-----KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 A +Q+ + + V+E + NV RLV ++ + + + + Sbjct: 805 LAMLRVEEALAGMDDVQMVLQVHDDLVFEVKEES------LINVARLVKKQMESALELAV 858 Query: 563 P 563 P Sbjct: 859 P 859 Score = 44.0 bits (102), Expect = 0.077, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%) Query: 602 VQAISRDILCEGMKNATKN-----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + DI+ M + +VL VHD++V E + +V L M Sbjct: 795 IQGTAADIIKLAMLRVEEALAGMDDVQMVLQVHDDLVFEVKEESLINVARLVKKQM 850 >gi|115378925|ref|ZP_01466060.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] gi|115364075|gb|EAU63175.1| DNA polymerase I [Stigmatella aurantiaca DW4/3-1] Length = 852 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 77/402 (19%), Positives = 139/402 (34%), Gaps = 68/402 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + +G ++D + L + E + + I L + L Sbjct: 454 DMELPLLPILARMEQQGVKLDTAVFKTLSTQVDAECETKLKHIHTLAGQEF-NVGSNPQL 512 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 L+ + + + +G + +LA+ L ++ KL +TL Sbjct: 513 AQVLYEKLQLPI--LKKGKTGPSTDQEVLEKLAEQHPLPGAILEYRSLSKLKSTYLDTLP 570 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 V+ DGR+ T A+ TGR S QN+P + Sbjct: 571 GLVAKDGRIHTTY-HQAATATGRLSSSDPNLQNIPVRT---------------------- 607 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +A G +LV AD + +E R+LA IA + + AF + EDI+ T A+ Sbjct: 608 --ELGREIRRAFVAEAGYQLVSADYSQVELRLLAHIAEDPVLLDAFQHDEDIHSRTAAEI 665 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST-ST 471 F DKV ++QR + K + + Y G + ++++ Sbjct: 666 FGVTPDKVDRDQRRVAKTVNFGIAYGLSPHGLSTRLSISVEEARDIIERYFTRYAGIRRY 725 Query: 472 FEDWEQAESHHLWMQDQYPE--------------------FAVKDKLIGTACELVKKAWR 511 ED + +++ + A+ + GTA +L+KKA Sbjct: 726 LEDTVERARKTGYVETMFGRRRLMADLNSKNRAVAQAAERAAINMPIQGTAADLIKKAML 785 Query: 512 AKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543 A + +LQ+ +L + AR+ Sbjct: 786 AVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQC 827 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 602 VQAISRDILCEGMKNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGTLCSL 650 +Q + D++ + M + V+ VHDE++ E P+ V L Sbjct: 772 IQGTAADLIKKAMLAVDEALTKERLATVMLLQVHDELLFEAPEAEVDRVKALARQ 826 >gi|315658046|ref|ZP_07910919.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] gi|315496936|gb|EFU85258.1| DNA-directed DNA polymerase I [Staphylococcus lugdunensis M23590] Length = 877 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 84/546 (15%), Positives = 182/546 (33%), Gaps = 77/546 (14%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 ID + K G+ YA+ I + A E + + ++L+++L ++ Sbjct: 324 IDGSNYLKDKILKFGL--YAQNQYIVISA-----EDIHQY---------TELIEWLENDH 367 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 + ++ + L I++ + + + ++++ +++ Sbjct: 368 NNKIVFDAKK-TYVAAHRLEINLQHIDF-DVMLASYIINPSRTIEDVQSVVSYYNQNF-- 423 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 K+ IA + KG P D H+ A CK + ++ L++ E Sbjct: 424 --VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQMDLLNNLEL 481 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + + G D++ + ++Q + ++ L +I + + L + L Sbjct: 482 PLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESF-NINSPKQLGIVL 540 Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 F + ++ ++ T +L D IL S + L + +S D Sbjct: 541 FETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKLQSTYVEGLQKVISDD 600 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 R+ A +TGR S QN+P + Sbjct: 601 QRIHTRFNQTLA-QTGRLSSIDPNLQNIPIR------------------------LEEGR 635 Query: 363 CVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R S+ ++ AD + IE RVLA + ++ +AF +G+DI+ T K F Sbjct: 636 KIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEK 695 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---- 473 D+V+ R K + + Y G ++ + + + + Sbjct: 696 DQVNDLMRRQAKAVNFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIV 755 Query: 474 -----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 S + ++ A+ + G+A +++K A + Sbjct: 756 KDAKANGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKN 815 Query: 517 VLQLWK 522 V + Sbjct: 816 VRETNY 821 >gi|297566628|ref|YP_003685600.1| DNA polymerase I [Meiothermus silvanus DSM 9946] gi|296851077|gb|ADH64092.1| DNA polymerase I [Meiothermus silvanus DSM 9946] Length = 846 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 71/382 (18%), Positives = 129/382 (33%), Gaps = 65/382 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E+ L + + RG +D+ + +L E + +E L+ +I +L + L Sbjct: 447 EVEKPLAAVLAQMECRGVALDVPYLQELSEELGKELGYLEAEIHRLAGHPF-NVNSRDQL 505 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 L+ G+ T K + S + ++ + + KL + L Sbjct: 506 EAILYDELGLQAGGKKTTTGKRSTAASVLEEMRSLHPIVGKILDYRELAKLKGTYLDPLP 565 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + GRL A+ TGR S QN+P + Sbjct: 566 KLIHPKTGRLHTRFNQTVAA-TGRLSSSDPNLQNIPVRT--------------------- 603 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R +A G LVVAD + IE R+LA ++G++ K F DI+ T A Sbjct: 604 ---EVGRKIRKAFVAEKGYCLVVADYSQIELRILAHLSGDENLKKVFTERRDIHTQTAAW 660 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471 F +KV + R K + + Y A + ++++ + Sbjct: 661 MFGLEPEKVDPQHRRAAKTINFGVLYGMSAHRLSGELGISYAEASGFIERYFASYPKVRL 720 Query: 472 FEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAW 510 + + AE +++ A + GTA +L+K A Sbjct: 721 WIEKTLAEGRERGYVETMFGRRRFVADLESKNRAIKEAAERMAFNMPVQGTAADLMKLAM 780 Query: 511 RAKHQG--------VLQLWKDL 524 + VLQ+ +L Sbjct: 781 VKLYPKLKERGAHLVLQVHDEL 802 Score = 57.1 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 9/114 (7%) Query: 557 DVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 + L R Y + G ++ S+ + ++ N+ VQ + D++ M Sbjct: 721 WIEKTLAEGRERGYVETMFGRRRFVADLESKNRAIKEAAERMAFNMPVQGTAADLMKLAM 780 Query: 615 ----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPL 663 + G +VL VHDE+V E P+ V + C +M W +PL Sbjct: 781 VKLYPKLKERGAHLVLQVHDELVVEAPEPLAKEVAEVMCEVMQNV--WELDVPL 832 >gi|251795550|ref|YP_003010281.1| DNA polymerase I [Paenibacillus sp. JDR-2] gi|247543176|gb|ACT00195.1| DNA polymerase I [Paenibacillus sp. JDR-2] Length = 890 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 86/548 (15%), Positives = 174/548 (31%), Gaps = 87/548 (15%) Query: 17 PKVGVWAYA--EQA---VITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVA 70 + G++ A E + A A D + Q ++L ++L D Sbjct: 326 TEHGLYVEAIGENPHQAEVLGLAAAVGD-TAYVVPVAALQQPFTAELRKWLEDADKPK-- 382 Query: 71 HNSLFERILFKKTLGIDIPSKRWI---CTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 N F+ + LG W LA L L + + + Sbjct: 383 -NG-FDTHKIELALG--WRGIEWHGAAFDVQLAAYL-----LDPTDTNLTLNALCDRYGQ 433 Query: 128 GKA--LIARFCKGSIDSPPYDCTRANHVQAWQ--LFGEYCKRDVEATRELFKRLIPLSDG 183 A + KG+ P + T H+ A + + + L + Sbjct: 434 SSVPHDEAVYGKGAKFKVPDNETLHRHLSAKADAVRKLTSLMRADLEKRGMNELY--FEL 491 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E+ L ++ + +G +++ + +L + + +I +L + + L Sbjct: 492 EQPLSVILAGMERQGIKVEKAELERLGSELETKLSAAVSEIYRLAEMEF-NIGSPKQLGE 550 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT------LSE 297 LF G+ + ++ + +LA + L + KL + L E Sbjct: 551 VLFEKLGLPVQKKTK--TGYSTDAEVLEKLAPYHEIVPLILHYRTLSKLQSTYIEGLLKE 608 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 G++ T + TGR S QN+P + Sbjct: 609 VRPETGKIH-TYYRQTIAATGRLSSQFPNLQNIPIR------------------------ 643 Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + S G ++ AD + IE RVLA I+G++ +AF + DI+ T Sbjct: 644 LEEGRQIRKAFVPSEPGWYILAADYSQIELRVLAHISGDERLKEAFIHDMDIHTKTAMDV 703 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F D+V R K + + Y G ++ ++Q+ + + + Sbjct: 704 FGVSADQVDSNMRRSAKAVNFGIVYGISDFGLSQNLNITRKEAAKFIEQYFEVFQGVRKY 763 Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D ++ + ++ A+ + GTA +++K A Sbjct: 764 MDDIVMQARRDGFVTTLLERRRYLPDIKASNFNLRSFAERTAMNTPIQGTAADIIKLAMV 823 Query: 512 AKHQGVLQ 519 ++ + + Sbjct: 824 RMNETLRE 831 Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 61/193 (31%), Gaps = 36/193 (18%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDL----------TEGFACVVQEGGSISAR 541 + G + + V R + G++ D E + Q Sbjct: 701 MDVFGVSADQVDSNMRRSAKAVNFGIVYGISDFGLSQNLNITRKEAAKFIEQYFEVFQGV 760 Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 R ++ R V +L R L S N R++ + N Sbjct: 761 RKYMDDIVMQARRDGFVTTLLERRRYL----PDIKASNFN--------LRSFAERTAMNT 808 Query: 602 -VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETP-DTPYFSVGTLCSLMTK 653 +Q + DI+ M + G ++L VHDE+V E P + + S M Sbjct: 809 PIQGTAADIIKLAMVRMNETLRERGLKSRMLLQVHDELVFEVPEEELELMKELVPSTMAG 868 Query: 654 NPSWAKGLPLKAE 666 + +PLKA+ Sbjct: 869 ALT--LDVPLKAD 879 >gi|186686230|ref|YP_001869426.1| DNA polymerase I [Nostoc punctiforme PCC 73102] gi|186468682|gb|ACC84483.1| DNA polymerase I [Nostoc punctiforme PCC 73102] Length = 978 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 119/677 (17%), Positives = 219/677 (32%), Gaps = 146/677 (21%) Query: 7 DIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDL--- 57 D ET + L +G C + + V + DL Sbjct: 392 DTETTALEPRDADLVGIG------------CCWGMQPDEVAYIPLGHKTGENLHKDLVLE 439 Query: 58 --LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS------L 109 L N+ F+R++ K GI++ + +LA P S L Sbjct: 440 GLRPILESADYPKALQNAKFDRLVLK-CQGINL--AGVVFDPMLASYILNPDSSHNLMDL 496 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDV 167 L L +L + +GK + I S C + A+ FG + ++ Sbjct: 497 GQRYLGLIAKSYLDLVPKGKTIAD----IDIPSVADYC----GMDAYSTFGLVPKLREEL 548 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + L K L+ + E+ L + + G RI+ + +L + + E +L E+ K+ Sbjct: 549 DKIPTLSKLLV---EVEQPLEAVLAQMEYTGVRINSAYLKELSQHLETELARLKEEATKI 605 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD-------LILN 280 + L LF G+ + + + +L +D I+ Sbjct: 606 AGENF-NLGSPKQLSQILFEKLGLSTKHSRKIQTGFSTDAATLEKLQEDDKSGFVEAIIE 664 Query: 281 RLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 S ++ L V D R+ A+ TGR S QN+P + Sbjct: 665 YRTLSKLKSTYVDALPALVRPDTQRVHTDFN-QAATSTGRLSSSNPNLQNIPIRT----- 718 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 S +R + G +V AD + IE R+LA ++ E + Sbjct: 719 -------------------AFSRQIRKAFLPEAGWLMVAADYSQIELRILAHLSQEPILV 759 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +A+ ED++ T F +K++ E+R I K + + Y G+ + G+D Sbjct: 760 QAYQQNEDVHTVTGRLVFEK--EKITSEERGIAKTINFGVIYGMGS---LRFSRSTGIDK 814 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ +K + E + + ++ ++ + + ++G Sbjct: 815 NIANEFIKRFN--ERYPKVFAYLEQVKKEAIALGYVETILGR------------------ 854 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579 RR + +RR K P L Sbjct: 855 ---------------------RRYFDFTNNSLRRLKGSN----PEDIDLS------KLKN 883 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSE 635 L + L+R +Q + DI+ M + Y ++L VHDE+V E Sbjct: 884 LGPYDAGLLRSAANAP------IQGSNADIIKIAMVRLHEVLKNYQARLLLQVHDELVFE 937 Query: 636 TPDTPYFSVG-TLCSLM 651 P + + + S+M Sbjct: 938 IPPDEWEELQPQIKSVM 954 >gi|160901568|ref|YP_001567149.1| DNA polymerase I [Petrotoga mobilis SJ95] gi|160359212|gb|ABX30826.1| DNA polymerase I [Petrotoga mobilis SJ95] Length = 896 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 106/579 (18%), Positives = 196/579 (33%), Gaps = 100/579 (17%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 + D+ET S P A+ I L ++ + L+ ++ + +++ L + Sbjct: 338 ISFDLETSSLDPYQ-------ADIVGIALSCKPFEGYFLYLYKEKDRWEITKEIVDLLNN 390 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNACLALNFSEH 121 + V+ N ++ + K I + S++A P S LA + ++ Sbjct: 391 KKVI--GQNLKYDITVLK---VNGIELSKVHFDSMIAAYLLNPDSRRFNMDDLAKEYLDY 445 Query: 122 LT-KMEE--GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 T K +E GK I G ID EY D + LF+ L Sbjct: 446 KTIKYKEVMGKD-IKLLTLGDIDKKRV--------------VEYAGEDADIAYRLFEVLK 490 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 P E + + G DL + KL+E ++ L ++ K+ Sbjct: 491 PKLEEFELFELFEKIEMSTINVLSEMEMNGVYFDLKELQKLEEEYNKKLSSLMYEMKKIV 550 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + + LF G+ ++ T L + +L Sbjct: 551 GYDF-NPNSPKQVGELLFENLGLKGKRKTKSGSYSTDADSLEALRDEHPIIEKLLEYRKY 609 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + + V+ GR+ + G + TGR S QNLP +E E + T Sbjct: 610 QKLLSTYIIAIPKLVNKKTGRVHTSFNQTG-TATGRLSSSEPNLQNLPIREEDGERIRST 668 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 ++A + L+ AD + IE RVLA + ++ I AF Sbjct: 669 VKAQK-----------------------DDYVLLSADYSQIELRVLAHLTNDETLINAFN 705 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 NGEDI+ T A F ID V R +GKV+ +L Y G A+ K + Sbjct: 706 NGEDIHALTAAAIFGVKIDDVDYNMRRVGKVVNFSLVYGSSPYGLAENLKIPVEDAKDFM 765 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWM-----------------QDQYPEFAVKDKLIGTA 502 ++ + + +++ + + + + + G+A Sbjct: 766 NRYFKTYQKVKEYQESSLKIATQKGYVETIFGRKRFLKNIKTGKSELKRIVINTPIQGSA 825 Query: 503 CELVKKAWRAKHQG-------VLQLWKDLTEGFACVVQE 534 +++K A ++ +LQ+ ++ + E Sbjct: 826 ADIMKLAMINLYKKLPKEAKLILQVHDEVVIELPEKIVE 864 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 9/119 (7%) Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTY 593 E R + V + + I K + T S+L R Sbjct: 759 EDAKDFMNRYFKTYQKVKEYQESSLKIATQKGYVETIFGRKRFLKNIKTGKSELKRIVIN 818 Query: 594 GGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M N K ++L VHDE+V E P+ + Sbjct: 819 TP------IQGSAADIMKLAMINLYKKLPKEAKLILQVHDEVVIELPEKIVEETKKMVQ 871 >gi|307299338|ref|ZP_07579139.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] gi|306915134|gb|EFN45520.1| DNA polymerase I [Thermotogales bacterium mesG1.Ag.4.2] Length = 896 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 107/598 (17%), Positives = 205/598 (34%), Gaps = 101/598 (16%) Query: 5 FIDIETRSPQP--LPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 ID+ET S P VGV + A+ D W + ++ + +L + Sbjct: 326 AIDLETSSLDPHCAKIVGVSISIDEGSGYYIPIAHESDG-----W-QADRDYVLKNLKKL 379 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D + + N F+ + GI + ++LA P + + L Sbjct: 380 LEDRSTKIIGQNLKFDYSVLA-VNGIHPVVPDF--DTMLAAYLLSPDAKRFNLDELAMKF 436 Query: 121 HLTKMEEGKALIAR------FCKGSIDSPPY----DCTRANHVQAWQLFGEYCKRDVEAT 170 K + + L+ + F K ++ D + + + Y + E Sbjct: 437 LGYKTIKFEDLMKKNQLGDDFTKVPLEEAARYSVEDADISLRLSSVLRKKIYEQELEEIF 496 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 R++ LIP+ + G D+ + L E + K+ E++ LT Sbjct: 497 RKVELALIPVL----------ADLELNGVYFDVPSLKNLSEKYGKILDKILEELFDLTGE 546 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSG 286 + + LF G+ ++G T L A +L+ Sbjct: 547 QF-NPNSPSQVGKVLFERLGLTPSKKTKGGSYSTSADALEEIADEHPAVQKLLDYRKYQK 605 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L++L E V+ GR+ + G + TGR S QNLP + Sbjct: 606 LKSTYLDSLPELVNKVTGRIHTSYHQTG-TGTGRLSSSNPNMQNLPIR------------ 652 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R C+I G K+V AD + IE R+LA ++ + + AF N Sbjct: 653 ------------DEEGKEIRKCVIPQKKGWKIVSADYSQIELRILAHLSQDKQLLDAFKN 700 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 +D++ T + + +VS+EQR IGK++ ++ Y G A + + + Sbjct: 701 DKDVHSLTASNLYGIKESEVSEEQRRIGKMINFSIIYGISSYGLASRLRIPTNVAEEMIS 760 Query: 461 QFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLI 499 + + F + Q ++ + + + A+ + Sbjct: 761 NYFKAFPEVRAFIRDTISEAKEKCFVRTMFGRKREIPQFKTKNRNVIQEGERIAINTPIQ 820 Query: 500 GTACELVKKAWRA----------KHQGVLQLWKDLT-EGFACVVQEGGSISARRVANV 546 GTA +++K A + +LQ+ ++ E +++ I ++ V Sbjct: 821 GTAADIMKMAMIKIYNLLKEKEMESFAILQVHDEMVYEAPEKEIEKLKEILKEGMSEV 878 >gi|78779619|ref|YP_397731.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] gi|78713118|gb|ABB50295.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9312] Length = 976 Score = 233 bits (594), Expect = 8e-59, Method: Composition-based stats. Identities = 95/612 (15%), Positives = 183/612 (29%), Gaps = 109/612 (17%) Query: 5 FIDIETRS----PQPLPKVGV--WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +D ET S L +G+ + + E + S + Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEETDDLFYIPLGHQTKKETTNQ---LSIEEVFSKIR 440 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA--- 115 ++ D NS F+R +F + K ++LA Sbjct: 441 TWIEDPKKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSEISFR 497 Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 F K GK F S + ++F E + + +LF Sbjct: 498 LFGFKPPSFKETVGKNKDFSFVDIDEASVYCGYDVFLTFKIVKIFKERFSMEKDELIKLF 557 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + + E L + + G ID+ + KL + + + ++ + +L +G Sbjct: 558 E------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEGNFNL 611 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-- 292 S L LF +D + + +L + + + + KL Sbjct: 612 S-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQYLIKHRTLSKLLS 670 Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L ++ GR+ A+ TGR S QN+P + Sbjct: 671 TYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT-------------- 715 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 S +R + KL+ AD + IE R+LA +A E+ I AF +DI Sbjct: 716 ----------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDI 765 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQ 464 + T F +++S ++R +GK + + Y G K F L ++ + Sbjct: 766 HSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLIKYKE 823 Query: 465 NVKSTSTFEDWEQ---------------------------------------AESHHLWM 485 F + ++ + M Sbjct: 824 RYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSARRAGM 883 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEG 535 + Q A + G++ +++K A ++ +LQ+ +L E Sbjct: 884 EAQSLRAAANAPIQGSSADIIKIAMVQINKKFIEMNVPAKMLLQVHDELLFEVEPDSLEI 943 Query: 536 GSISARRVANVP 547 + ++ Sbjct: 944 TTKLVKKTMEDC 955 >gi|325695817|gb|EGD37714.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK150] Length = 880 Score = 233 bits (594), Expect = 9e-59, Method: Composition-based stats. Identities = 73/505 (14%), Positives = 160/505 (31%), Gaps = 70/505 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++P+ + + LA+ + + + KG Sbjct: 381 VLLSHYGIELPAAAF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + P H+ + ++ +L L + E+ L + + G Sbjct: 435 AKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + +Q + + L ++I L + L LF G+ L + Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLPLEYTKK 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + +LA + I KL + L EA+++DG++ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372 ++TGR S QN+P +R + Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAI 431 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKAEDVTPNDRRN 708 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K + + Y G A ++ + + + + Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVE 768 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520 S + +++ A+ + G+A +++K A + + ++ Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 + + V + R++ Sbjct: 829 LLQVHDEIVLEVPADELTAVRQLVK 853 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPADELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IKLA--VPLVAD 869 >gi|331267297|ref|YP_004326927.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] gi|326683969|emb|CBZ01587.1| DNA-directed DNA polymerase [Streptococcus oralis Uo5] Length = 877 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 84/529 (15%), Positives = 179/529 (33%), Gaps = 89/529 (16%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + +L+ ++T + V ++ ++L + LG+++ + Sbjct: 337 FAWSCGD---KLYTTDKLELLQEPILKEFLEKTPLKV-YDFKKAKVLLNR-LGLNLQAPA 391 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + S LA+ N +++ + KG + P Sbjct: 392 Y--DSRLAKYLLSTVENNEISTIANLYGQTYLVDD----ETFYGKGVKKAIPER------ 439 Query: 153 VQAWQLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202 + F E+ R V E L ++L L D E+ L + + G ++ Sbjct: 440 ----EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 495 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + +L++Q ++L ++I +L + L + LF G+ L + Sbjct: 496 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + + +LA + + I K+ + L + + DG++ ++T Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQT 613 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 709 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474 + Y G + + + + + D Sbjct: 710 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 769 Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + G+A +++K A + +++ Sbjct: 770 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 818 >gi|33520055|ref|NP_878887.1| DNA polymerase I [Candidatus Blochmannia floridanus] gi|33504401|emb|CAD83294.1| DNA polymerase I [Candidatus Blochmannia floridanus] Length = 943 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 86/540 (15%), Positives = 173/540 (32%), Gaps = 89/540 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + V+ + N F L K+ +I I +L L N Sbjct: 424 LENPAVVKIGQNMKFNYSLLKRH---NINLSGKIFDVILEFYI-----LYGTTNYQNIKR 475 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP- 179 L K L + + ++ + + ++ Y + + A +L + L P Sbjct: 476 FLNKETFNSILNFQQSYDNYNNYIVKEIKNIYQESL-----YAIQLILAIFDLHQILWPQ 530 Query: 180 ----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + E L + I G ID L+ + L +L Sbjct: 531 LYSNDKLKKIFQEIEIPLISILAHIESYGVLIDKTLLCSYSMELNVHLNTLQNQAYQLAG 590 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L+ L+ + ++ + S + + +L+ + ++ ++ Sbjct: 591 TSF-NLDSIKQLQEILYKKQKLPILKKTPSGSPST-NEEVLKKLSHKYPIPKIILKYRSL 648 Query: 290 LKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 KL N L V+++ R+ + + TGR S QN+P + Sbjct: 649 SKLKSTYTNKLISMVNTESNRIHTSYN-QTRTATGRLSSANPNLQNIPNR---------- 697 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R IA + +V AD + IE R++A ++ + I F Sbjct: 698 --------------NHDGRKIRQAFIAPSHSVIVSADYSQIELRIMAHLSRDFKLINDFL 743 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDL 459 +G+DI+ TT ++ F T ++ V+ EQR K + L Y A S + Sbjct: 744 SGKDIHTTTASEIFVTSLNLVTNEQRHQAKTINFGLIYGMSAFGLSKQLSVTCYEAQKYV 803 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 ++ Q + S +L + A+ + Sbjct: 804 DRYFQRYPGVMQYIQHIKDNVYKYGYVSTLEGRKLYLPNIYSKNLSKKKGAERAAINAPM 863 Query: 499 IGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVM 551 G+A +++KKA W + +Q+ + + VQ + +++ + Sbjct: 864 QGSAADIIKKAMISINYWLKQDDIPVQMIMQVHDELVFEVQNNFIDTAIKQIKKLMEECF 923 >gi|212638359|ref|YP_002314879.1| DNA polymerase I [Anoxybacillus flavithermus WK1] gi|212559839|gb|ACJ32894.1| DNA polymerase I [Anoxybacillus flavithermus WK1] Length = 875 Score = 233 bits (593), Expect = 9e-59, Method: Composition-based stats. Identities = 78/497 (15%), Positives = 164/497 (32%), Gaps = 73/497 (14%) Query: 53 MPSDLLQY-------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 +P+D+ L DE ++ + K GI++ + +LA Sbjct: 345 IPTDIALASSRFKRWLEDEQCKKSVFDAKRAIVALK-WNGIELKGVDF--DLLLAAYLLN 401 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 P+ ++ + KG+ + P A H+ K Sbjct: 402 PT--DANGDVAAVAKTKQYTDVQSDEEVY-GKGAKQAIPPTNVLAEHLVRKAKAIASLKE 458 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + ++ L E L + + G ++D+D + ++ + + +++++ I Sbjct: 459 TYIQELKRNEQFELLVHLELPLTFILAQMEFYGVKVDVDRLEQMGKEFTAQLEQIEQRIY 518 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L + L LF + +V ++ S + +LA + Sbjct: 519 ELAGTTF-NINSPKQLGTILFEKLQLPIVKKTKTG--YSTSADVLEKLAPYHEIIEQILH 575 Query: 286 GSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L + V D G++ Q ++TGR S QN+P + Sbjct: 576 YRQLGKLQSTYVEGLMKVVRKDTGKVHTIFQ-QALTQTGRLSSTEPNLQNIPIR------ 628 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + S + + AD + IE RVLA IA ++ Sbjct: 629 ------------------IEEGRKIRQAFVPSSDDWVIFAADYSQIELRVLAHIANDENL 670 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I AF + DI+ T F+ D+V+ R K + + Y G ++ Sbjct: 671 IAAFHHDLDIHTKTAMDIFHVKEDEVTAHMRRQAKAVNFGIVYGISDYGLSQNLGITRKE 730 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 ++++ ++ + + S + ++ A Sbjct: 731 AAEFIERYFRSYPGVKRYMEEVVQDAKQKGYVTTLLHRRRYLPDITSGNFNVRSFAERTA 790 Query: 494 VKDKLIGTACELVKKAW 510 + + G+A +++KKA Sbjct: 791 MNTPIQGSAADIIKKAM 807 >gi|289550552|ref|YP_003471456.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] gi|289180084|gb|ADC87329.1| DNA polymerase I [Staphylococcus lugdunensis HKU09-01] Length = 877 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 84/546 (15%), Positives = 182/546 (33%), Gaps = 77/546 (14%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 ID + K G+ YA+ I + A E + + ++L+++L ++ Sbjct: 324 IDGSNYLKDKILKFGL--YAQNQYIVISA-----EDIHQY---------TELIEWLENDH 367 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 + ++ + L I++ + + + ++++ +++ Sbjct: 368 NNKIVFDAKK-TYVAAHRLEINLQHIDF-DVMLASYIIDPSRTIEDVQSVVSYYNQNF-- 423 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGER 185 K+ IA + KG P D H+ A CK + ++ L++ E Sbjct: 424 --VKSDIAVYGKGKKRQVPLDDVLEVHIAAIMQAIYNCKPLMSDILSDHNQMDLLNNLEL 481 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + + G D++ + ++Q + ++ L +I + + L + L Sbjct: 482 PLARILADMEETGIYTDVNDLKEMQNELQEKLDNLVSEIYEAAGESF-NINSPKQLGIVL 540 Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 F + ++ ++ T +L D IL S + L + +S D Sbjct: 541 FETLKLPIIKKTKTGYSTAVDVLEQLQGKHPIIDYILEYRQLSKLQSTYVEGLQKVISDD 600 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 R+ A +TGR S QN+P + Sbjct: 601 QRIHTRFNQTLA-QTGRLSSIDPNLQNIPIR------------------------LEEGR 635 Query: 363 CVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R S+ ++ AD + IE RVLA + ++ +AF +G+DI+ T K F Sbjct: 636 KIRKAFKPTSDDYVILSADYSQIELRVLAHMTQDESLKEAFIHGDDIHAATAMKVFGVEK 695 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---- 473 D+V+ R K + + Y G ++ + + + + Sbjct: 696 DQVNDLMRRQAKAVNFGIVYGISDYGLSQNLGITRKKAKAFIDDYLASFPGVKQYMTDIV 755 Query: 474 -----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 S + ++ A+ + G+A +++K A + Sbjct: 756 KDAKANGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFDKN 815 Query: 517 VLQLWK 522 V + Sbjct: 816 VRETNY 821 >gi|331091047|ref|ZP_08339889.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405269|gb|EGG84805.1| hypothetical protein HMPREF9477_00532 [Lachnospiraceae bacterium 2_1_46FAA] Length = 871 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 72/406 (17%), Positives = 138/406 (33%), Gaps = 69/406 (16%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 +D E L + G ++ + + + + + +L+ +I ++ + Sbjct: 472 TDIEMPLAFTLFDMEQAGVKVKAEELKVYGQQLGGKINELETEIYEIAGETF-NINSPKQ 530 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295 L + LF + ++ + + +LA D + + KL + L Sbjct: 531 LGVVLFEHLNLPNGKKTKTG--YSTAADVLEKLAPDYPIVSKILEYRQLAKLKSTYADGL 588 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + DGR+ G + TGR S QN+P Sbjct: 589 ANFIQEDGRIHGKFN-QTVTATGRISSTEPNLQNIP------------------------ 623 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + V AD + IE R+LA +G++ I A+ DI+ T ++ Sbjct: 624 VRMELGRLIRKVFVPEEDYVFVDADYSQIELRILAHCSGDESLISAYKEARDIHRITASQ 683 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+ P D+V+ +R K + + Y G ++ G + + + T Sbjct: 684 VFHIPFDEVTDLERRNAKAVNFGIVYGISSFGLSQDLSITRKEAGEYIDNYFKTYPGIKT 743 Query: 472 FEDWEQA---------------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 F D A ES + + A+ + GTA +++K A Sbjct: 744 FLDDTVAHAKEQGYVVTLFGRRRPVPELESGNFMQRSFGERVAMNAPIQGTAADIMKIAM 803 Query: 511 RAKH----------QGVLQLWKDLT-EGFACVVQEGGSISARRVAN 545 + + VLQ+ +L E + V+E SI R + Sbjct: 804 IGVNRTLKEKQMKSKLVLQVHDELLIEAYKDEVEEVKSILKREMEE 849 >gi|304440505|ref|ZP_07400392.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370983|gb|EFM24602.1| DNA-directed DNA polymerase I [Peptoniphilus duerdenii ATCC BAA-1640] Length = 882 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 76/499 (15%), Positives = 168/499 (33%), Gaps = 68/499 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 DL DE + + +++ + I+ L I K S++ L + Sbjct: 359 EDLRALFEDEKIEKIGYDAKEDVIIL---LSKKIDLKNLTYDSMIVEYL-----LDSTAS 410 Query: 115 ALNFSEHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + F ++K + G K + KG D + + + + E E Sbjct: 411 SFEFQNIISKYDLGSYKDEQSLLGKGVKKKSYSDLEKDELFKYFSFILNGSFKLKEIQME 470 Query: 173 LFKRLIPLS---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + L + + E L + + G + ++ ++ + + + + L I +++ Sbjct: 471 KLEELEMVDLYREIELPLLEVLAYMELTGIKTEVSVLDDIGKNLDDRIENLTSSIFEISG 530 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + T L LF + ++ ++ T + +L + IL + Sbjct: 531 EEF-NINSTKQLGEILFDKLRLTVIKKTKTGYSTAQDVLEKLVDESPIIENILEYRKLTK 589 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L ++ GR+ G + TGR S QN+P + Sbjct: 590 LKNTYIDGLKALINEKTGRIHSRFNQTG-TSTGRISSTEPNLQNIPIRS----------- 637 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +AS LV D + IE RVLA ++ + ++AF +G Sbjct: 638 -------------EEGRLIRGAFLASEDSTLVDCDYSQIELRVLASLSKDPRMMEAFEHG 684 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T ++ F+ + V+ R+ K + + Y G ++ + Sbjct: 685 MDIHTKTASEVFHVDKEDVTDLLRSRAKAVNFGIVYGISDFGLSRQLGITRELAKEYIDG 744 Query: 462 FSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIG 500 + N K + D+ + + + ++ A+ + G Sbjct: 745 YFDNFKKVKEYMDYEIETGKKQGYVKTIFNRRRYIPELSAKNFNIRSFGERIALNTPIQG 804 Query: 501 TACELVKKAWRAKHQGVLQ 519 +A +++K A + + + Sbjct: 805 SAADIIKIAMVKVYGEIKK 823 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 45/109 (41%), Gaps = 11/109 (10%) Query: 551 MRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 ++ K + + + ++ Y + Y+ +++ R++G ++ N +Q + D Sbjct: 749 FKKVKEYMDYEIETGKKQGYVKTIFNRRRYIPELSAKNFNIRSFGERIALNTPIQGSAAD 808 Query: 609 ILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 I+ M ++LT+HDE+V + + + + LM Sbjct: 809 IIKIAMVKVYGEIKKRNLKSKLILTIHDELVVDAVNDE---LEVVEELM 854 >gi|114567529|ref|YP_754683.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338464|gb|ABI69312.1| DNA polymerase I [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 866 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 78/495 (15%), Positives = 157/495 (31%), Gaps = 83/495 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L + HN+ F ++L + GI++ T +LA + Sbjct: 366 QWIKALLESAVIKKYLHNAKFIQVLLLRH-GIELRGVA-GDTMLLAYVDDPAFEGDELDA 423 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L L E N ++ +L+ + + REL Sbjct: 424 CLKKHLQLNIAENNL-----------------AALVNTIR--ELYFQLEGQIPAELREL- 463 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L + E + + + G +++ + ++ E +A +E I +L + Sbjct: 464 -----LQEVEMPMSEVLARMEFCGVKVERSTLARISEELASGIAGHEERIFELAGSSF-N 517 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L LF G+ ++ + T +L ILN S Sbjct: 518 INSPKQLGKVLFEDLGLRVIKKGKTGYSTGAEVLEELYQEHEIIAHILNYRQLSKIKSTY 577 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L E + GR+ + + TGR S QN+P + Sbjct: 578 ADALQELIHPETGRVHTIFK-QAQTATGRLSSVEPNLQNIPIR----------------- 619 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R +A ++ AD + I+ R LA I+G++ I+ F +G DI+ Sbjct: 620 -------MEEGRRIRQAFVAPGPDWLIMAADYSQIDLRSLAHISGDERLIETFKSGVDIH 672 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T + F+ P++ V E R K + + Y G A+ + + + Sbjct: 673 TRTAVEIFHVPVEWVDSELRRRAKAVNFGIIYGISDFGLARDTGVSRKEARKYIDNYLNS 732 Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + + + + +Q A+ + GT+ + Sbjct: 733 YPGVKKYMEDIVEFGRRHGYVETLLKRRRYLPELNARNKMVQAFGRRMALNTPVQGTSAD 792 Query: 505 LVKKAWRAKHQGVLQ 519 ++K A + + + Sbjct: 793 IIKLAMIKVDEEIRK 807 >gi|297529110|ref|YP_003670385.1| DNA polymerase I [Geobacillus sp. C56-T3] gi|297252362|gb|ADI25808.1| DNA polymerase I [Geobacillus sp. C56-T3] Length = 876 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 349 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 406 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W L + Sbjct: 407 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 462 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ E +A++ + +++ Sbjct: 463 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 517 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 518 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 576 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 577 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 629 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 630 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 672 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 673 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 732 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 733 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 792 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 793 NTPIQGSAADIIKKAMIDLN 812 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 744 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 745 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 804 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 805 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 847 >gi|144704831|gb|ABP02067.1| DNA polymerase [Bacillus caldolyticus] Length = 878 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 351 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 408 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W L + Sbjct: 409 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 464 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ E +A++ + +++ Sbjct: 465 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 519 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 520 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 578 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 579 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 631 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 632 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 674 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 675 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 734 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 735 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 794 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 795 NTPIQGSAADIIKKAMIDLN 814 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 746 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 747 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 806 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 807 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 849 >gi|205374551|ref|ZP_03227347.1| DNA polymerase I [Bacillus coahuilensis m4-4] Length = 876 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 78/504 (15%), Positives = 171/504 (33%), Gaps = 87/504 (17%) Query: 53 MPSDL-------LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 +P+D+ ++LRDE+ V +++ + K+ + S+LA Sbjct: 346 IPTDIASESEGWQEWLRDESKEKVVYDAKKSIVALKRQ---GLELNGVSFDSLLAAYIIN 402 Query: 106 PS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-----ANHVQAW 156 P+ + S + E+ A+ ++D+ R + + Sbjct: 403 PAQNHEDFASVGKEYGLSS-VQSDEQVYGKGAKQAVPNLDALSEHVARKASMLWDLTEKL 461 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + + +D L D E L + + +G ++D + + + + + Sbjct: 462 KTALKENHQDA---------LF--FDLELPLAFILGEMEYQGVKVDRTRLTSMGKELGGK 510 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQL 273 K+L+E I L + L + LF + ++ ++ T +L Sbjct: 511 LKELEEKIYDLAGETF-NINSPKQLGVILFEKLELPVIKKTKTGYSTSADVLEKLQSKHE 569 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + IL+ + L + + D ++ ++TGR S QN+P Sbjct: 570 IVEYILHYRQLGKLNSTYIEGLLKVIHEDSDKVHTRFN-QALTQTGRLSSTDPNLQNIPI 628 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAW 391 + +R + S G + AD + IE RVLA Sbjct: 629 R------------------------LEEGRKIRQAFVPSKEGWVIFAADYSQIELRVLAH 664 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 I+G++ ++AF ED++ T + F+ D V+ E R K + + Y G ++ Sbjct: 665 ISGDEKLMEAFQQDEDVHTKTAMEVFSVSKDDVTSEMRRHAKAVNFGIVYGISDFGLSQS 724 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 G ++++ + + + + S + ++ Sbjct: 725 LNITRKEAGEFIERYLDTYPAVKEYMEDIVVEARDKGYVSTLLNRRRYIPELTSRNFNLR 784 Query: 487 DQYPEFAVKDKLIGTACELVKKAW 510 A+ + G+A +++K+A Sbjct: 785 SFGERTAMNTPIQGSAADIIKQAM 808 >gi|1405438|emb|CAA67184.1| DNA-dependent DNA polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 850 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 68/381 (17%), Positives = 132/381 (34%), Gaps = 65/381 (17%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 ER L + + G+++D D +++ + I + KL+ I ++ + L Sbjct: 452 IERPLIPVLYEMEKTGFKVDRDALIQYTKEIENKILKLETQIYQIAGEWF-NINSPKQLS 510 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + ++ ++ T +L LIL+ + L +A+ Sbjct: 511 YILFEKLKLPVIKKTKTGYSTDAEVLEELFDKHEIVPLILDYRMYTKILTTYCQGLLQAI 570 Query: 300 SSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ T G + TGR + QN+P + Sbjct: 571 NPSSGRVHTTFIQTG-TATGRLASSDPNLQNIPVKY------------------------ 605 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F Sbjct: 606 DEGKLIRKVFVPEGGHVLIDADYSQIELRILAHISEDERLISAFKNNVDIHSQTAAEVFG 665 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 I V+ E R+ K + + Y G A+ K + ++ + + D Sbjct: 666 VDIADVTPEMRSQAKAVNFGIVYGISDYGLARDIKISRKEAAEFINKYFERYPKVKEYLD 725 Query: 475 WEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + + ++ A+ + G+ +++K A Sbjct: 726 NTVKFARDNGFVLTLFNRKRYIKDIKSTNRNLRGYAERIAMNSPIQGSPADIMKLAMIKV 785 Query: 514 HQG----------VLQLWKDL 524 +Q +LQ+ +L Sbjct: 786 YQKLKENNLKSKIILQVHDEL 806 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R Y ++ N +Q DI+ M + I+L VHDE++ E P Sbjct: 757 LRGYAERIAMNSPIQGSPADIMKLAMIKVYQKLKENNLKSKIILQVHDELLIEAPYEEKD 816 Query: 643 SVGTLCS 649 V + Sbjct: 817 IVKEIVK 823 >gi|42522378|ref|NP_967758.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] gi|39574910|emb|CAE78751.1| DNA polymerase I [Bdellovibrio bacteriovorus HD100] Length = 863 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 75/402 (18%), Positives = 142/402 (35%), Gaps = 55/402 (13%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + + L + ++ G RID DL+ K E +A++ ++++ I + + Sbjct: 469 YQELDLPLARVLLSMERLGVRIDKDLLAKQSEELAKDIAEIEKQIHEAAGESF-NVGSPK 527 Query: 240 ALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 L + LF G+ ++ G + L+L S ++ L Sbjct: 528 QLGVILFEKLGLPAGKKTKTGYSTDEEVLLGLEHPIAKLVLQWREMSKLKSTYVDALPTM 587 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + D R+ + + TGR S QN+P + Sbjct: 588 IDPKDERVHTSFN-QALTTTGRLSSTQPNLQNIPIRTAR--------------------- 625 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 VR IA+ KL+ D + IE R+LA I+ + KAFA DI+ T A+ F Sbjct: 626 ---GQQVRKAFIAAPRMKLLSVDYSQIELRILAHISEDPNLCKAFAEDLDIHAATAAEVF 682 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P+ V+ E R K + + Y G A+ + ++++ K+ + Sbjct: 683 GVPLKDVTAEHRRSAKAVNFGIAYGQGAFGLAENLGISRTEAKDIIERYFNRFKNVREYI 742 Query: 474 DWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRA 512 D +H + A+ + GTA +LVKKA Sbjct: 743 DGTIKMAHEKGYVETLFGRRRYIDELQSKNMALKKFGERAAINAPIQGTASDLVKKAMIE 802 Query: 513 KHQGV-LQLWKDLTEGFACV-VQEGGSISARRVANVPRLVMR 552 + V +++ + + +E + ++ ++ VM+ Sbjct: 803 VFEKVPVRMLLQVHDELIFEDFEENLQKHSPQLVSIMENVMK 844 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 6/113 (5%) Query: 542 RVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 R N + V + + G Y++ S+ M + +G + N Sbjct: 730 RYFNRFKNVREYIDGTIKMAHEKGYVETLF---GRRRYIDELQSKNMALKKFGERAAINA 786 Query: 602 -VQAISRDILCEGMKNA-TKNGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651 +Q + D++ + M K ++L VHDE++ E + L S+M Sbjct: 787 PIQGTASDLVKKAMIEVFEKVPVRMLLQVHDELIFEDFEENLQKHSPQLVSIM 839 >gi|329737170|gb|EGG73424.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU028] Length = 876 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 81/524 (15%), Positives = 169/524 (32%), Gaps = 65/524 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + + + + E L+Q+L D+ + +++ + LGI+I Sbjct: 332 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388 Query: 89 PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + S+ + + + ++ K I F KG P + Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 442 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + +++ E + + L D E L + + + G D++ + Sbjct: 443 ILNEHIASVTEAIAAVTPTMKSQLEDYNQNELLKDLELPLARILSEMEEIGIYTDINDLK 502 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ I ++ L +I + + L + LF + ++ ++ T + Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L D IL + + L + +S D R+ A +TGR S Sbjct: 562 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 620 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P + +R S ++ AD + Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA I ++ AF NG DI+ T K FN D+V R K + + Y Sbjct: 657 IELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478 G ++ + + + + Sbjct: 717 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A + + + Sbjct: 777 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820 Score = 40.5 bits (93), Expect = 0.85, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M TK ++L VHDE++ E P + + +M + Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855 >gi|268608093|ref|ZP_06141821.1| DNA polymerase I [Ruminococcus flavefaciens FD-1] Length = 845 Score = 233 bits (593), Expect = 1e-58, Method: Composition-based stats. Identities = 81/419 (19%), Positives = 146/419 (34%), Gaps = 74/419 (17%) Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 D E EL +++ E L + ++ D G ID V + + + Sbjct: 429 KKLRSVIDKEGMTELLEKI------ELPLTEVLASMEDIGICIDKQGVEDFGTYLTEMIE 482 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 + + + + L LF G+ ++ + + +L D Sbjct: 483 ETQQMVYDDAGHSFNIA-SPKQLGTVLFEEMGLPAKKKTKSGYSTNAE--VLEELRNDAP 539 Query: 279 LNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + KLN+ L + ++ DGR+ + +RTGR S QN+P + Sbjct: 540 IVDNVLKFRQYTKLNSTYVVGLLDKIADDGRIHTWFR-QTETRTGRISSTEPNMQNIPVR 598 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R +A G+KLV AD + IE RV+A + Sbjct: 599 T------------------------ELGAQMRKFFVAPKGRKLVDADYSQIELRVMAHLC 634 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 G+ I+AF +GEDI+ +T A+ F+ P V+ E R+ K + + Y G AK Sbjct: 635 GDKNMIEAFNSGEDIHTSTAAQVFDMPSIMVTPEMRSAAKAVNFGIIYGIGAFSLAKDIG 694 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQ 488 T + + + + + F + + S + MQ Sbjct: 695 TSVAKAKKYINDYLAKYEKVNEFMETTVDNAFKDGYVTTMFGRKRRIPELSSSNKMMQAA 754 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGS 537 A+ + GTA +L+K A + + +LQ+ +L + E + Sbjct: 755 GKRIAMNTPVQGTAADLIKIAMINVYNRLKAEDIDAKLILQVHDELILEASESDAEHAA 813 >gi|167461235|ref|ZP_02326324.1| Phage-related DNA polymerase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383556|ref|ZP_08057314.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] gi|321152024|gb|EFX44960.1| hypothetical protein PL1_0952 [Paenibacillus larvae subsp. larvae B-3650] Length = 222 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 76/271 (28%), Positives = 106/271 (39%), Gaps = 61/271 (22%) Query: 416 AFNTPIDK--VSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 FN ++K V+ R GK+ ELALGY G K+M Sbjct: 1 MFNVAVEKHGVNGHLRQKGKIAELALGYGGSVGALKSMG--------------------- 39 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A++ + + + AWR + + +LW D+ V+ Sbjct: 40 -------------------ALEMGIEEEELQPLVTAWRQSNSNITKLWWDVDRAVKVCVK 80 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT---------AT 584 + + + + IVLPS RRL Y + + T Sbjct: 81 QKTPTETHGIKFI------YQSGMLFIVLPSGRRLAYVKPRMGENVFGGESVTYEGVGGT 134 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + R +YG K ENIV AISRDIL M+ T IV VHDEI+ E FS Sbjct: 135 KKWERIESYGPKFVENIVHAISRDILYHAMQ--TLKNCSIVAHVHDEIIIEADMRMSFSA 192 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 +C M + PSWA GL L A+GYE + Y+K Sbjct: 193 --ICEQMARTPSWANGLLLSADGYECQFYQK 221 >gi|87302855|ref|ZP_01085666.1| DNA polymerase I [Synechococcus sp. WH 5701] gi|87282738|gb|EAQ74696.1| DNA polymerase I [Synechococcus sp. WH 5701] Length = 997 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 108/617 (17%), Positives = 189/617 (30%), Gaps = 133/617 (21%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L N+ ++R++ + + + + ++LA L++A Sbjct: 464 LESARHPKTLQNAKYDRLILLRH---GLSLEGVVMDTLLADY------LRDANAKHGLEV 514 Query: 121 HLTKMEEGKALIARFC-KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----- 174 F + S YC DV T L Sbjct: 515 L---------AERNFGFTPTSFSELVAKGETFAAVPIAAAARYCAMDVHVTWRLTPLLRG 565 Query: 175 ------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + L L D E L + + G RID + L E +A L+ + Sbjct: 566 QLQQLGEALPKLLDQVELPLEPVLARMEATGIRIDKPYLATLSEELAGTLASLEAGAREA 625 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G++ + + + +LA D + L Sbjct: 626 AGVEFNLA-SPKQLGELLFETLGLERKKSRKTKTGWSTDAAVLEKLAGDHPVVPLVLEHR 684 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L V GR+ + TGR S QN+P + Sbjct: 685 TLSKLKSTYVDALPALVEPETGRVHTDFN-QAVTATGRLSSSNPNLQNIPIRT------- 736 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 S +R + G +L+ AD + IE R+L ++GE+ ++A Sbjct: 737 -----------------EFSRRIRKAFLPQEGWQLISADYSQIELRILTHLSGEEVLVEA 779 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 +ANG+D++ T + D+V+ ++R +GK + + Y GA+ F A G+ Q Sbjct: 780 YANGDDVHALTARLLLDK--DEVTADERRLGKTINFGVIYGMGAQRF---ARETGVSQSQ 834 Query: 462 FSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + ++Q + A+ + T Sbjct: 835 AKEFLSK------YKQRYPKVFAFLELQERLALSRGYVETI------------------- 869 Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 L GG R K I L +RR Sbjct: 870 --LGRRRPFAFDPGGLGRLRG------------KPPEEIELEVARRA------------- 902 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSE 635 +Q +R +Q S DI+ M + +G ++L VHDE+V E Sbjct: 903 GMEAQQLRAAANAP------IQGSSADIIKLAMVQLDQQLRASGLPARLLLQVHDELVLE 956 Query: 636 -TPDTPYFSVGTLCSLM 651 P+ + + +M Sbjct: 957 AAPEALEPVLAAVKQVM 973 >gi|319940068|ref|ZP_08014422.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] gi|319810782|gb|EFW07109.1| DNA polymerase I [Streptococcus anginosus 1_2_62CV] Length = 881 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 81/529 (15%), Positives = 173/529 (32%), Gaps = 77/529 (14%) Query: 57 LLQYLRDETVMCVAHNSLFER--ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + F+R +L + LGI++ R S LA+ Sbjct: 363 FKEFLENTALKVY----DFKRSKVLLSR-LGIEL--SRPAFDSRLAKYLLSTVDNNEIVT 415 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 TK+ E +A+ + KG+ + P +H+ ++ + Sbjct: 416 IAGL-YGKTKLAEDEAV---YGKGAKRALPEKAILLSHLARKVTVLIETEKPMTDLLRQH 471 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 +L L + E+ L + + G +++ + + +Q + +L ++I L + Sbjct: 472 DQLNLLYEMEQPLAFVLAKMEIAGIKVERETLQTMQAENERILTRLTQEIYDLAGEEF-N 530 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L LF G+ + + + +LA + I K+ + Sbjct: 531 INSPKQLGGILFEKLGLPTSFTKKTKTGYSTAVDVLERLAPIAPIVEKILDYRQIAKIQS 590 Query: 295 -----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L + + +DG++ ++TGR S QN+P + Sbjct: 591 TYVMGLQDWILADGKIHTRY-LQDLTQTGRLSSVDPNLQNIPIR---------------- 633 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+G+ I+AF +G DI Sbjct: 634 --------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISGDKHLIEAFRHGADI 685 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + FN + V+ R K + + Y G A + + Sbjct: 686 HTSTAMRVFNIERPEDVTPNDRRNAKAVNFGVVYGISDFGLANNLGISRKEAKSYIDTYF 745 Query: 464 QNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 746 ERYPGIKNYMENVVREARDKGYVETLFHRRREIPDINSRNFNVRGFAERTAINSPIQGSA 805 Query: 503 CELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARRVAN 545 +++K A Q + ++ + + V E + + + Sbjct: 806 ADILKIAMIRLGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALVK 854 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS-LMTKN 654 +Q + DIL M + D ++L VHDEIV E P+ ++ L +M Sbjct: 801 IQGSAADILKIAMIRLGQALIDGNFKTRMLLQVHDEIVLEVPENELTAIKALVKDIMESA 860 Query: 655 PSWAKGLPLKAE 666 +PLKA+ Sbjct: 861 IE--LSVPLKAD 870 >gi|126696667|ref|YP_001091553.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] gi|126543710|gb|ABO17952.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9301] Length = 976 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 97/572 (16%), Positives = 177/572 (30%), Gaps = 101/572 (17%) Query: 5 FIDIETRS----PQPLPKVGVWAYAE--QAVITLCAYAWDDE-PVKLWDRTEQSAMPSDL 57 +D ET S L +G+ E + E P +L + S L Sbjct: 384 SLDTETNSLNPIDAELVGIGLCLGEENDDLFYIPLGHQIKKETPNQL----SIEDVFSKL 439 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA-- 115 ++ D NS F+R +F + K ++LA Sbjct: 440 RTWIEDPKKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSEISF 496 Query: 116 --LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 F K GK F + S + ++F E ++ + +L Sbjct: 497 RLFGFKPPSFKETVGKNKDFSFVDINEASIYCGYDVFLTFKIVKIFKERFSKEKDELIKL 556 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 FK + E L + + G ID+ + KL + + + ++ + +L D Sbjct: 557 FK------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIENKVFELADENFN 610 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 S L LF +D + + +L + + + I KL Sbjct: 611 LS-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDALVLERLVDEHEIIQHLIKHRTISKLL 669 Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L ++ GR+ A+ TGR S QN+P + Sbjct: 670 STYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT------------- 715 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 S +R + KL+ AD + IE R+LA +A E+ I AF +D Sbjct: 716 -----------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDD 764 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFS 463 I+ T F +++S ++R +GK + + Y G K F L ++ Sbjct: 765 IHSLTARLIFEK--EEISSDERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLIKYK 822 Query: 464 QNVKSTSTFEDWEQ---------------------------------------AESHHLW 484 + F + ++ + Sbjct: 823 ERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSARRAG 882 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 M+ Q A + G++ +++K A ++ Sbjct: 883 MEAQSLRAAANAPIQGSSADIIKIAMVQLNKK 914 >gi|294507650|ref|YP_003571708.1| DNA polymerase I [Salinibacter ruber M8] gi|294343979|emb|CBH24757.1| DNA polymerase I [Salinibacter ruber M8] Length = 949 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 87/519 (16%), Positives = 174/519 (33%), Gaps = 92/519 (17%) Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 + HN ++ +L K+ + + +++A P E+ Sbjct: 435 DTEKLGHNLKYDLLLLKQH---GVEVGGTLFDTMVAHYLVAP------------EENHNL 479 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAW--QLFGEYCKRDVEATRELFKRLIPLS- 181 + ++++ D D T + ++ + Y D + + L L Sbjct: 480 DDVARSVLNYKMVPIADLIG-DETDRDSMREVDVETAAPYACEDADISYRLADELEAQLE 538 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + T+ G R+D D++ ++ + + ++E++ +L Sbjct: 539 DGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEF 598 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L LF + +V + T K S + +L+ + + L + KL Sbjct: 599 -NINSTQQLGEILFEKLDLPVVSKTP-TGKPSTKESVLQELSTEHEIPGLVLDWRSTYKL 656 Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++L E V GRL + + TGR S QN+P + Sbjct: 657 KSTYLDSLGELVHPETGRLHTSFN-QTRTATGRLSSSDPNLQNIPIRT------------ 703 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + +G L+ AD A IE R+LA ++G+D F G Sbjct: 704 ------------EMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGG 751 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ A+ + + V+ EQR+ K + + Y G A+ + ++Q+ Sbjct: 752 DIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQRMRMPVDEAQDIIKQY 811 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 ++ S + +S + + AV + GT Sbjct: 812 RKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNARSAAERVAVNMPIQGT 871 Query: 502 ACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQE 534 +++K A H + Q+ + + V Sbjct: 872 QADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPP 910 >gi|262281777|ref|ZP_06059546.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] gi|262262231|gb|EEY80928.1| DNA polymerase I [Streptococcus sp. 2_1_36FAA] Length = 880 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 77/492 (15%), Positives = 162/492 (32%), Gaps = 79/492 (16%) Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCK---GSIDSPPYDCTRANHVQAWQLFGE 161 LP++ +A LA + + E + + + + D + + QLF E Sbjct: 390 LPAASFDARLAKYLLSTV-EDNELATIARLYGQTILPTDDEVYGKGAKRALPEQEQLF-E 447 Query: 162 YCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + R V+ E + + L + E+ L + + G +++ + + +Q Sbjct: 448 HLARKVQVLLETEEPMKDQLRSHDQLDLLLEMEQPLAFVLAKMEIAGIKVERETLQGMQV 507 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + L ++I L + L LF G+ L + + + Sbjct: 508 ENEKTLESLTQEIYDLAGQEF-NINSPKQLGTILFEDMGLSLEYTKKTKTGYSTAVDVLE 566 Query: 272 QLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 +LA + I KL + L EA+++DG++ ++TGR S Sbjct: 567 RLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QDLTQTGRLSSVDPN 625 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385 QN+P +R + L+ +D + IE Sbjct: 626 LQNIP------------------------VRLEQGRLIRKAFVPEWADSVLLSSDYSQIE 661 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ-- 442 RVLA I+ ++ I AF +GEDI+ T + F + V+ R K + + Y Sbjct: 662 LRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIEKTEDVTPNDRRNAKAVNFGVVYGIS 721 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQAE 479 G A ++ + + + + Sbjct: 722 DFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVETIYHRRRSLPDIN 781 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQ 533 S + +++ A+ + G+A +++K A + + ++ + + V Sbjct: 782 SRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVP 841 Query: 534 EGGSISARRVAN 545 + R++ Sbjct: 842 NDELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEENFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|3041672|sp|P52026|DPO1_BACST RecName: Full=DNA polymerase I; Short=POL I Length = 876 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 80/492 (16%), Positives = 166/492 (33%), Gaps = 62/492 (12%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + L +L DET +S + K GI++ + + ++ Sbjct: 349 ETALADPKFLAWLGDETKKKTMFDSKRAAVALK-WKGIELRGVVFDLLLAAYLLDPAQAA 407 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 A +A + + E ++ A + KG+ + P + T A H+ + + Sbjct: 408 GDVAAVA-----KMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLVRKAAAIWALEEPLM 462 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ L++ E+ L + + G ++D + ++ + ++ + ++ I +L Sbjct: 463 DELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA 522 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + ++ ++ T +L + IL+ Sbjct: 523 GQEF-NINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLG 581 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + V G++ ++TGR S QN+P + Sbjct: 582 KLQSTYIEGLLKVVHPVTGKVHTMFN-QALTQTGRLSSVEPNLQNIPIR----------- 629 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFA 403 +R + S L+ AD + IE RVLA IA +D I+AF Sbjct: 630 -------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFR 676 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T F+ + V+ R K + + Y G A+ + Sbjct: 677 RGLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFI 736 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D S + ++ A+ + Sbjct: 737 ERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPI 796 Query: 499 IGTACELVKKAW 510 G+A +++KKA Sbjct: 797 QGSAADIIKKAM 808 >gi|78358489|ref|YP_389938.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220894|gb|ABB40243.1| DNA polymerase I [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 931 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 72/364 (19%), Positives = 130/364 (35%), Gaps = 57/364 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + + E L + + RG RI+ + +E +L +++ + G + R + Sbjct: 526 MEELEMPLIPVLADMELRGIRINRAEFSGFLAEVQKELDRLTQEVYAVAGGQF-NIRSSQ 584 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNT 294 L LF G+ ++G ++ S + + +LA D IL L Sbjct: 585 QLGELLFGTLGLKAGSKTKGG-QASTSQAVLEKLAGKHPVIDTILEYRKLEKLRSTYLEP 643 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + R+ T A+ TGR S QN+P Sbjct: 644 LPRLAQENDRIHTTFNQL-ATATGRLSSSQPNLQNIP----------------------- 679 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 G +R C A+ G KLV AD + IE RVLA ++ + I++F EDI+ T Sbjct: 680 -VRGPMGQRMRRCFTAAPGNKLVAADYSQIELRVLAHVSADPTLIESFTRNEDIHSRTAG 738 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 ++ V+ +QR K + L Y G A+ K + ++++ + Sbjct: 739 LLYDVTAADVTPDQRRNAKTINFGLIYGMGPQKLAQELKVTLNEAKEFIERYFSKLSHLK 798 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 F D + + + ++ Q A+ + G+A +++K A Sbjct: 799 EFYDNVEQSAREHGFVTTLAGRRRLLPEIHSDNNQLRSQARRQAINTVVQGSAADIIKIA 858 Query: 510 WRAK 513 Sbjct: 859 MLKA 862 >gi|253578996|ref|ZP_04856267.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849939|gb|EES77898.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 849 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 59/367 (16%), Positives = 127/367 (34%), Gaps = 58/367 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L ++ G + + + E ++ +L++ I + + Sbjct: 449 YTQIELPLIFTLDSMEKWGISVKSEELKSYGEKLSVRIGELEKQIWQQAGEEF-NINSPK 507 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 + + LF G+ ++ + + +LA + + + + KL + Sbjct: 508 QMGVILFEKLGLKGGKKTKTG--YSTAADILEKLAPEYPIVKDILEYRQLAKLKSTYADG 565 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L ++ DGR+ T + TGR S QN+P Sbjct: 566 LVGEIAEDGRIHSTFN-QTITATGRISSTEPNLQNIP----------------------- 601 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + AD + IE RVLA ++G++ I+A+ +DI+ T + Sbjct: 602 -VRMELGRLIRKVFVPEEGYVFLDADYSQIELRVLAHMSGDEKLIQAYKEAQDIHRHTAS 660 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F+ P D+V+ QR K + + Y G ++ ++++ + Sbjct: 661 EVFHVPFDEVTDLQRRNAKAVNFGIVYGISSFGLSQDLSITRKEAAEYIERYFETYPKIK 720 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 F D + +S + + A+ + GTA +++K A Sbjct: 721 GFLDGLVEEGKEKGYVTTMFGRRRPIPELKSGNFMQRSFGERVAMNSPIQGTAADIIKIA 780 Query: 510 WRAKHQG 516 ++ Sbjct: 781 MNRVYRR 787 >gi|83814085|ref|YP_445755.1| DNA polymerase I [Salinibacter ruber DSM 13855] gi|83755479|gb|ABC43592.1| DNA polymerase I [Salinibacter ruber DSM 13855] Length = 926 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 87/519 (16%), Positives = 175/519 (33%), Gaps = 92/519 (17%) Query: 65 TVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTK 124 + HN ++ +L K+ + + +++A P E+ Sbjct: 412 DTEKLGHNLKYDLLLLKQH---GVEVGGTLFDTMVAHYLVAP------------EENHNL 456 Query: 125 MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL--FGEYCKRDVEATRELFKRLIPLS- 181 + ++++ D D T + ++ ++ Y D + + L L Sbjct: 457 DDVARSVLNYKMVPIADLIG-DETDRDSMREVEVETAAPYACEDADISYRLADELEAQLE 515 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + T+ G R+D D++ ++ + + ++E++ +L Sbjct: 516 DGNVLDVAHDIEFPLVHVLATMEHTGIRLDTDVLDEILAGLEERLSGIEEEVFELAGEEF 575 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L LF + +V + T K S + +L+ + + L + KL Sbjct: 576 -NINSTQQLGEILFEKLDLPVVSKTP-TGKPSTKESVLQELSTEHEIPGLVLDWRSTYKL 633 Query: 293 -----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++L E V GRL + + TGR S QN+P + Sbjct: 634 KSTYLDSLGELVHPETGRLHTSFN-QTRTATGRLSSSDPNLQNIPIRT------------ 680 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + +G L+ AD A IE R+LA ++G+D F G Sbjct: 681 ------------EMGRQIRRAFVPKDGWALLSADYAQIELRILAAMSGDDAMRATFQEGG 728 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ A+ + + V+ EQR+ K + + Y G A+ + ++Q+ Sbjct: 729 DIHTDAAARVYGIDPEDVTPEQRSKAKEVNYGIPYGISPWGLAQRMRMPVDEAQDIIKQY 788 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 ++ S + +S + + AV + GT Sbjct: 789 RKSYPGVSQLLNELVEKAQDKGYAETLLGRRRYLPDIDSSNSNARSAAERVAVNMPIQGT 848 Query: 502 ACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQE 534 +++K A H + Q+ + + V Sbjct: 849 QADMIKIAMNRIHDRLAGDDWATQMLLQVHDELVFEVPP 887 >gi|313895447|ref|ZP_07829004.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] gi|312976342|gb|EFR41800.1| DNA-directed DNA polymerase [Selenomonas sp. oral taxon 137 str. F0430] Length = 893 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 63/365 (17%), Positives = 123/365 (33%), Gaps = 58/365 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G ++ +++ + ++++DI L + L Sbjct: 491 EIELPLVPILAAMERTGVAVNRAALVRALAAANERIAEIEQDIYALAGTEF-NISSPKQL 549 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNTLS 296 LF G+ M + + + ++ D +L S L + Sbjct: 550 GEVLFDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIG 609 Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + D GR+ + + TGR S QN+P + Sbjct: 610 ALIRPDTGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT--------------------- 647 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 VR+ G L+ AD + IE R+LA ++G++ I AF G+DI+ T + Sbjct: 648 ---EEGRAVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTAS 704 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F P+ +V+ QR K + + Y G ++ ++++ + Sbjct: 705 EVFGVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGVR 764 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 F D A++H + + A+ + GTA +L+K A Sbjct: 765 AFLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIA 824 Query: 510 WRAKH 514 Sbjct: 825 MIRAD 829 Score = 44.7 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R+ ++ N +Q + D++ M A I+L VHDE+V E + Sbjct: 800 QRSNAERMAMNTPIQGTAADLIKIAMIRADAALRAAGVKSRILLQVHDELVLEVVNDE-- 857 Query: 643 SVGTLCSLMTKNPSWAKGL--PLKAE 666 + + L+T S A L PL + Sbjct: 858 -IAQVTELLTAAMSGAAQLAVPLAVD 882 >gi|806281|gb|AAC37139.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 876 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 80/492 (16%), Positives = 166/492 (33%), Gaps = 62/492 (12%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + L +L DET +S + K GI++ + + ++ Sbjct: 349 ETALADPKFLAWLGDETKKKTMFDSKRAAVALK-WKGIELRGVVFDLLLAAYLLDPAQAA 407 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 A +A + + E ++ A + KG+ + P + T A H+ + + Sbjct: 408 GDVAAVA-----KMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEHLARKAAAIWALEEPLM 462 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ L++ E+ L + + G ++D + ++ + ++ + ++ I +L Sbjct: 463 DELRRNEQDRLLTELEQPLAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA 522 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + ++ ++ T +L + IL+ Sbjct: 523 GQEF-NINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLG 581 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + V G++ ++TGR S QN+P + Sbjct: 582 KLQSTYIEGLLKVVHPVTGKVHTMFN-QALTQTGRLSSVEPNLQNIPIR----------- 629 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFA 403 +R + S L+ AD + IE RVLA IA +D I+AF Sbjct: 630 -------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFR 676 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T F+ + V+ R K + + Y G A+ + Sbjct: 677 RGLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFI 736 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D S + ++ A+ + Sbjct: 737 ERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERTAMNTPI 796 Query: 499 IGTACELVKKAW 510 G+A +++KKA Sbjct: 797 QGSAADIIKKAM 808 >gi|153814488|ref|ZP_01967156.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|317500531|ref|ZP_07958753.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|331089370|ref|ZP_08338270.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847982|gb|EDK24900.1| hypothetical protein RUMTOR_00701 [Ruminococcus torques ATCC 27756] gi|316898041|gb|EFV20090.1| DNA polymerase I [Lachnospiraceae bacterium 8_1_57FAA] gi|330405433|gb|EGG84968.1| hypothetical protein HMPREF1025_01853 [Lachnospiraceae bacterium 3_1_46FAA] Length = 871 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 72/420 (17%), Positives = 142/420 (33%), Gaps = 76/420 (18%) Query: 154 QAWQLFGEYCKRD---VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +A+ F D EA + RL + E L + G +++ + + Sbjct: 447 EAYTAFAAASVLDNKLKEAEMD---RLF--YEIEMPLVFTLYEMESAGVKVEAEALKLYG 501 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + + ++ +L+ I ++ + L + LF + ++ + + Sbjct: 502 DQLGEQIIQLEHQIYEMAGEEF-NINSPKQLGVILFEKLNMPHAKKTKTG--YSTAADVL 558 Query: 271 TQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA++ + + KL + L+ + DGR+ G + TGR S Sbjct: 559 EKLAEEYPIVSKILEYRQLAKLKSTYADGLAVFIGDDGRIHGKFN-QTVTATGRLSSTEP 617 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P +R + V AD + IE Sbjct: 618 NLQNIP------------------------VRMELGRMIRKVFVPKEDCVFVDADYSQIE 653 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA +G++ IKA+ DI+ T ++ F+TP D+V+ QR K + + Y Sbjct: 654 LRVLAHCSGDEQLIKAYREATDIHRMTASQVFHTPFDEVTDLQRRNAKAVNFGIVYGISS 713 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G + ++ + + F D + +S Sbjct: 714 FGLSMDLSITRKEAAEYIEHYFETYPGVKKFLDDSVENAKEKGYAVTLFGRRRPVPELKS 773 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFAC 530 + ++ A+ + GTA +++K A H+ +LQ+ +L C Sbjct: 774 SNFMQRNFGERVAMNAPIQGTAADIMKIAMIDVHKELKKRNMKSRMILQVHDELLIEAEC 833 >gi|119512517|ref|ZP_01631596.1| DNA polymerase I [Nodularia spumigena CCY9414] gi|119462824|gb|EAW43782.1| DNA polymerase I [Nodularia spumigena CCY9414] Length = 970 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 105/614 (17%), Positives = 198/614 (32%), Gaps = 117/614 (19%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 +L L N F+R++F + GI + + T + + + ++ Sbjct: 432 ELSPILTSADYPKTFQNGKFDRLVF-RCQGIKLAGIVF-DTMLASYVLNPDTPHNLNDIS 489 Query: 116 LNFSEHLTKMEEGKALI-ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + + K E SI S Y C H +QL + + ++E L Sbjct: 490 LRYLGLILKSYEDLVPKGQTIADISIASVGYYCCLQVHA-TFQL-VQKLREELEKFPALH 547 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 K L + E+ L + + G I+ + +L + + + KL+E + + Sbjct: 548 KLL---LEVEQPLEAVLAEMEYTGVCINSAYLHELSQQLEIDLAKLEETATSIAGETF-N 603 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-------DLILNRLASSGS 287 L + LF G+ + + + +L + D ++ S Sbjct: 604 LGSPKQLSVILFDKLGLSTKYSRKIKTGYSTDVATLEKLQEVDETGFVDAMMEYRTLSKL 663 Query: 288 AILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++ L V D RL + TGR S QN+P + Sbjct: 664 KSTYVDALPALVRPDTQRLHTNFN-QTVTATGRLSSSNPNLQNIPIRT------------ 710 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 S +R + +G + AD + IE R+LA ++ E ++A+ E Sbjct: 711 ------------AFSRQIRKAFLPESGYLMAAADYSQIELRILAHLSQEPILLQAYQQNE 758 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T F ++ ++R I K + + Y G+ + G+D ++ + Sbjct: 759 DIHTVTARLVFEKS--DITSDERRIAKTINFGVIYGMGS---LRFSRSTGIDKSIANEFI 813 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 K + E + Q ++ ++ Q + ++G Sbjct: 814 KRFN--ERYPQVFAYLEGVKKQAISQGYVETILG-------------------------- 845 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT 582 +R V S R+L S + L Sbjct: 846 ---------------------------RRRYVDFKNDSLRKLKNSKPEDIDLSKLKNLGP 878 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKN----ATKNGYDIVLTVHDEIVSETPD 638 + L+R +Q S DI+ M K ++L VHDE+V E P Sbjct: 879 EDAGLLRSAANAP------IQGSSADIIKIAMIRMHEVLQKYQARLLLQVHDELVFEVPP 932 Query: 639 TPYFSVG-TLCSLM 651 + + + S+M Sbjct: 933 QEWEELQPQIKSVM 946 >gi|319760727|ref|YP_004124665.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] gi|318039441|gb|ADV33991.1| DNA polymerase I [Candidatus Blochmannia vafer str. BVAF] Length = 950 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 83/545 (15%), Positives = 168/545 (30%), Gaps = 95/545 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNA 112 L L + + + HN F L K+ +I I +L +S +K Sbjct: 426 LKPILENIKIKKIGHNMKFIFSLLKQH---NIHLSGPIFDVILELYVLYGTSNYQNIKRF 482 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSID---------SPPYDCTRANHVQAWQLFGEYC 163 +H+ K ++ K +I + H W ++ Sbjct: 483 LNKTTILDHIFKFQQIYNNNKYLIKKNIRDIQLESSCSTQLIYAISNLHQILWTEIKQHN 542 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + K++ + E L + I D G ID + + + L Sbjct: 543 E---------LKKIF--INIEIPLISVLSRIEDYGVLIDKKFLYSHSIKLNSQLNNLKTQ 591 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 +LT + L+ L+ + + + S S + +L+K + ++ Sbjct: 592 AYQLTGSSF-NLDSPKQLQEILYNQEKLPIFKKTPHGAPST-SEEVLKKLSKKHSIPKII 649 Query: 284 SSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++ KL N L ++ R+ + + TGR S QN+P + Sbjct: 650 LKYRSLSKLKSTYTNKLISMINKKSNRIHTSYN-QTRTSTGRLSSTNPNLQNIPNRNYD- 707 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDW 397 +R IA ++ AD + IE R++A ++ + Sbjct: 708 -----------------------GRKIRQAFIAPENSLIISADYSQIELRIMAHLSRDLK 744 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS---- 453 I F +DI+ TT ++ F T + V+ EQR K + L Y A S Sbjct: 745 LINDFLEEKDIHTTTASEIFVTSLHLVTGEQRQRAKTVNFGLIYGMTAFGLSKQLSVTCQ 804 Query: 454 HCGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEF 492 + ++ Q + + S ++ + Sbjct: 805 EAQKYVDRYFQRYPGVMQYMQYIKDYAKKNGYVSTLDGRKLYLPDIYSSNISQKKGAERS 864 Query: 493 AVKDKLIGTACELVKKAWRAKHQ----------GVLQLWKDLTEGFACVVQEGGSISARR 542 A+ + G+A +++K+A + ++Q+ +L + R+ Sbjct: 865 AINAPMQGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNTFVDIAVKQIRK 924 Query: 543 VANVP 547 + Sbjct: 925 LMEEC 929 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 20/122 (16%) Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL--MRERTYGGKLT 598 V + + K++ ++ R+L D+ Y + + + R Sbjct: 818 PGVMQYMQYIKDYAKKNGYVSTLDGRKLYLPDI-----YSSNISQKKGAERSAINAP--- 869 Query: 599 ENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651 +Q + DI+ M +++ VHDE+V E +T +V + LM Sbjct: 870 ---MQGSAADIIKRAMISIDSWLQTDNIPVHMIMQVHDELVFEVNNTFVDIAVKQIRKLM 926 Query: 652 TK 653 + Sbjct: 927 EE 928 >gi|261418256|ref|YP_003251938.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|319767784|ref|YP_004133285.1| DNA polymerase I [Geobacillus sp. Y412MC52] gi|261374713|gb|ACX77456.1| DNA polymerase I [Geobacillus sp. Y412MC61] gi|317112650|gb|ADU95142.1| DNA polymerase I [Geobacillus sp. Y412MC52] Length = 876 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 170/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 349 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 406 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W L + Sbjct: 407 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 462 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ E +A++ +++ Sbjct: 463 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLGTVEQR 517 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 518 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 576 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 577 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 629 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 630 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 672 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 673 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 732 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 733 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 792 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 793 NTPIQGSAADIIKKAMIDLN 812 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 685 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 744 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 745 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 804 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 805 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 847 >gi|116628454|ref|YP_821073.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|116101731|gb|ABJ66877.1| DNA polymerase I [Streptococcus thermophilus LMD-9] gi|312279074|gb|ADQ63731.1| DNA polymerase I [Streptococcus thermophilus ND03] Length = 879 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 84/521 (16%), Positives = 170/521 (32%), Gaps = 70/521 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW +E +++ T+ + S+ Q + V F+R + LGID+P+ Sbjct: 337 IIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA+ L + + KG+ + P Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAIPEKEVLL 445 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +H+ + K + + L D E L + + G ++D + ++ Sbjct: 446 SHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKMEMAGIKVDGQTLNEMA 505 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 KL +DI ++ + L + LF G+ L + + + Sbjct: 506 VENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + DG++ ++TGR S Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRY-MQDLTQTGRLSSVDP 623 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P +R + S L+ +D + I Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTKDAVLLSSDYSQI 659 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442 E RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G + + + + + D Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDI 779 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + +++ A+ + G+A +++K A + +++ Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820 >gi|282911317|ref|ZP_06319119.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|282325012|gb|EFB55322.1| DNA polymerase I [Staphylococcus aureus subsp. aureus WBG10049] gi|312437852|gb|ADQ76923.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus TCH60] Length = 876 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELSLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 >gi|291563492|emb|CBL42308.1| DNA polymerase I [butyrate-producing bacterium SS3/4] Length = 877 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 76/475 (16%), Positives = 156/475 (32%), Gaps = 68/475 (14%) Query: 80 FKKTLGI-DIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 K +L + + + +A P + + LI + Sbjct: 377 LKHSLPFAKLSYGDTVYDAGVAAYLLNPLKDTYGYDDIARDVLGMTVPSKTDLIKKMSYK 436 Query: 139 SIDSPPYDC-TRANHVQAWQLF---GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + D TR + A+ F +R E R + E L + Sbjct: 437 DACAKEQDNFTRMAGLMAYTAFAAGKPLSERLAAEGMEDLYR-----NIELPLIYTLFHM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 D G + + + + ++ L+++I ++T + L LF I Sbjct: 492 EDEGIAVRREELTAYGGKLKKQIAVLEKEIWEMTGQEF-NINSPKQLGEILFEKMQIKGG 550 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 ++ + + +LA D + + KLN+ L + DGR+ Sbjct: 551 KKTKTG--YSTAADVLEKLAPDYPVIQKILDYRQYTKLNSTYADGLGTYIKEDGRIHSRF 608 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P + +R + Sbjct: 609 N-QTITATGRISSTEPNLQNIPIR------------------------MELGREIRKVFV 643 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 NG + AD + IE RVLA ++G++ I+A+ +DI+ T ++ F+ P+++V+ QR Sbjct: 644 PRNGFLFLDADYSQIELRVLAHMSGDERLIEAYKTAQDIHAITASQVFHIPLNEVTPLQR 703 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + + Y G ++ ++++ + +F D Sbjct: 704 RNAKAVNFGIVYGISAFGLSEDLSISRKEAMEYIERYFETYPQVKSFLDSLVAHAKEQGY 763 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + +S + + A+ + GTA +++K A + + + Sbjct: 764 VTTMFGRRRPVPELKSSNFMQRSFGERVAMNSPIQGTAADIIKIAMIRVDERLRR 818 Score = 44.0 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 7/65 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M + ++L VHDE++ ET + Sbjct: 784 QRSFGERVAMNSPIQGTAADIIKIAMIRVDERLRRENLRSRLILQVHDELLIETAEDEKE 843 Query: 643 SVGTL 647 +V + Sbjct: 844 TVMKI 848 >gi|83590675|ref|YP_430684.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] gi|83573589|gb|ABC20141.1| DNA polymerase I [Moorella thermoacetica ATCC 39073] Length = 885 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 64/383 (16%), Positives = 129/383 (33%), Gaps = 66/383 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E L + + G ++++ + + + L E I +L + L Sbjct: 481 RVELPLTRVLGAMESYGVAVNMETLDLMGIELEGGLAALTEAIYELAGEEF-NLNSPKQL 539 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF G+ V ++ T ++L ++ + ++ L Sbjct: 540 AVILFEKLGLPPVKRTKTGFSTDAAVLEELACRHPIAAKLVEYRQLAKLKSTYVDGLKPL 599 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V+ G L + + TGR S QN+P Sbjct: 600 VNPRTGSLHTSFN-QTVTATGRLSSSEPNLQNIP------------------------VR 634 Query: 358 GLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G+ L+ AD + IE R+LA I+G++ I AF GEDI+ T A+ Sbjct: 635 LELGRRLRKAFVPHGPGRLLLAADYSQIELRILAHISGDEAMIAAFRRGEDIHARTAAEV 694 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P+ +V+ R K + + Y G ++ S ++++ + + + Sbjct: 695 FGVPLGEVTPAMRRSAKAVNFGIVYGISDYGLSRDLGISRSEAHDYIERYFRRYRGVKAY 754 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + A + + ++ A+ + GTA +++K A Sbjct: 755 LEEIVARARQEGYVTTLLGRRRYLPDLFSSNRNVRSFGERTAMNTPIQGTAADIIKMAMV 814 Query: 512 A----------KHQGVLQLWKDL 524 + +LQ+ +L Sbjct: 815 KIFRLLEAQYPAARMILQVHDEL 837 >gi|325849919|ref|ZP_08170958.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479943|gb|EGC83026.1| DNA-directed DNA polymerase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 778 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 88/501 (17%), Positives = 171/501 (34%), Gaps = 73/501 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP-SKRWICTS--VLARTNGLPSSLKN 111 + +Y DE + V+ + E I+ LGI+I I ++ + Sbjct: 256 DNFKKYFEDENINKVSFDIK-EDIVLFNKLGIEINFPYDDIMLMHYLIDPSRSSYDLKTF 314 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD----- 166 + L + + GK + Y + + D Sbjct: 315 SQAFLKYEVLNEEDLLGKG---------RNKKSYKDLSEKELGKYLSSIINAIEDSLDIL 365 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + +EL + D E L + + G+ D + + K+++ ++ E + L++ I + Sbjct: 366 TDKLKELSMYEL-YKDCEIKLSKVLADMEITGFVCDKNELEKIKDEVSVELEGLEKIIYE 424 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L + LF + ++ ++ T +L I Sbjct: 425 LAGSEF-NINSPKQLSIILFEDLELPIIKKTKTGYSTDAKVLEKLRDKHPIIGKIERYRE 483 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 L +L E + DGR+R T + + TGR S QNLP + Sbjct: 484 MYKLKSTYLESLEECIDGDGRIRSTFK-QNVTATGRLSSTEPNLQNLPIRT--------- 533 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R A N K L+ AD + IE RVLA +A + +AF+ Sbjct: 534 ---------------EEGRKIRKAFKADNEKILIDADYSQIELRVLAHLANDKKMQEAFS 578 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 + DI+ T ++ FNTPID+V+K QR+ K + + Y G ++ + Sbjct: 579 HDIDIHTKTASEVFNTPIDEVTKLQRSEAKAVNFGIIYGISDYGLSQNLNIPRKRAKEYI 638 Query: 460 QQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKL 498 + + + + S + ++ A+ + Sbjct: 639 ENYLNTYPQIKKYMKDIVKKAKEEGFVNTIFNRRRYVPEINSKNFNVRSFGERVALNTPI 698 Query: 499 IGTACELVKKAWRAKHQGVLQ 519 G+A +++K A ++ + + Sbjct: 699 QGSAADIIKFAMINSYENLKK 719 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%) Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M K IVL +HDEI+ E Sbjct: 686 RSFGERVALNTPIQGSAADIIKFAMINSYENLKKAKVDAKIVLQIHDEIIIEASKKDLQK 745 Query: 644 VGTL 647 + Sbjct: 746 AKEI 749 >gi|326391770|ref|ZP_08213290.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] gi|325992186|gb|EGD50658.1| DNA polymerase I [Thermoanaerobacter ethanolicus JW 200] Length = 872 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 94/542 (17%), Positives = 187/542 (34%), Gaps = 87/542 (16%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I A+++ ++ V D + DL + E H + ++ GI+ Sbjct: 328 EIKKIAFSFGEDTVY-IDVFQIE----DLKEIFEKEEFEFTTHEIK-DFLVKLSYKGIEC 381 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDS 142 SK +I T+V+A S + L + +G+ G Sbjct: 382 KSK-YIDTAVMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIGEDIL 440 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y C+R H+ + ++ K L + E L + + + G+ +D Sbjct: 441 ADYICSRCVHLFDLREKLMNFIE----EMDMKKLL---LEIEMPLVEVLKLMEVSGFTLD 493 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +++ +L + I ++ + I K + L +LF + ++ ++ Sbjct: 494 KEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEKLNLPVIKKTKTGYS 552 Query: 260 TLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L + D+I R + ++ + + R+ + + TG Sbjct: 553 TDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMDENNRVHSNFK-QMVTATG 610 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +E +R I +V Sbjct: 611 RISSTEPNLQNIPIRE------------------------EFGRQIRRAFIPRTKDGYIV 646 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA ++G++ I++F N EDI++ T A+ F P++KV+ E R K + Sbjct: 647 SADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNF 706 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 + Y G ++ K + + + K + + Sbjct: 707 GIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRR 766 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK 522 + S + + Q A+ + G+A +++K A K Q +LQ+ Sbjct: 767 RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHD 826 Query: 523 DL 524 +L Sbjct: 827 EL 828 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 17/200 (8%) Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523 + S + + +H + F + + + TA E+ K + + K Sbjct: 644 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKA 703 Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR----DVHIVLPSSRRLVYSDVK 574 + G + + G IS + R+K IV + + + Sbjct: 704 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIM 763 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLT 627 Y+ S+ +R+ +L N +Q + DI+ M ++ ++L Sbjct: 764 NRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQ 823 Query: 628 VHDEIVSETPDTPYFSVGTL 647 VHDE+V +T V + Sbjct: 824 VHDELVVDTYKDEVDIVKKI 843 >gi|82751278|ref|YP_417019.1| DNA polymerase I [Staphylococcus aureus RF122] gi|82656809|emb|CAI81238.1| DNA polymerase I [Staphylococcus aureus RF122] Length = 876 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 79/514 (15%), Positives = 170/514 (33%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDINNYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDILMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDILMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|306828647|ref|ZP_07461840.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] gi|304429153|gb|EFM32240.1| DNA-directed DNA polymerase I [Streptococcus mitis ATCC 6249] Length = 889 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 84/529 (15%), Positives = 176/529 (33%), Gaps = 89/529 (16%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + +L+ ++T + V ++ ++L + LG+++ + Sbjct: 349 FAWSCGD---KLYATDKLELLQDPILKEFLEKTSLKV-YDFKKAKVLLNR-LGLNLQAPA 403 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + S LA+ N ++ + KG + P Sbjct: 404 F--DSRLAKYLLSTVENNEISTIANLYGQTYLADD----ETFYGKGVKKAIPER------ 451 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRID 202 + F E+ R V E L+ L D E+ L + + G ++ Sbjct: 452 ----EKFLEHLARKVAVLVETEPVLLEKLGEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + +L++Q +KL ++I +L + L + LF G+ L + Sbjct: 508 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + + +LA + + I K+ + L + + DG++ ++T Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVGLQDWILDDGKIHTRYV-QDLTQT 625 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474 + Y G + + + + + D Sbjct: 722 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 781 Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + G+A +++K A + +++ Sbjct: 782 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 830 >gi|38233736|ref|NP_939503.1| DNA polymerase I [Corynebacterium diphtheriae NCTC 13129] gi|38199997|emb|CAE49666.1| DNA polymerase I [Corynebacterium diphtheriae] Length = 899 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 70/394 (17%), Positives = 140/394 (35%), Gaps = 65/394 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G +D+ + + +++ ++ K+ + +L + L Sbjct: 497 EMELPLVGVLARMEATGICVDVATLREQRDIFVEQVKEEESAARELAGDETLNLSSPKQL 556 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSE 297 ++ LF G+ ++ + + + K L+ L + Sbjct: 557 QVVLFDTLGLPKTKKTKTGYSTAAKEIESLAVKNPHPFLDHLLAHREFQKMKTTLDGLIK 616 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 AV DGR+ T + TGR S QN+P + Sbjct: 617 AVGDDGRIHTTFN-QTVASTGRLSSTEPNLQNIPVRT----------------------- 652 Query: 358 GLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 A +RS + G K L+ AD + IE RV+A ++ + I+A+ GED++ +K Sbjct: 653 -PAGRKIRSAFVVGQGYKSLLTADYSQIEMRVMAHLSEDPGLIEAYQTGEDLHNFVGSKV 711 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ P+D+V+ E R K M L Y G ++ A + ++ + + + Sbjct: 712 FDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLNIPAGEAKVIMESYFERFGGVKRY 771 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW- 510 D ++ + ++ A+ + GTA +++K A Sbjct: 772 LDQVVEQARKDGFTSTLFGRRRYLPELSSDNRVARENAERAALNAPIQGTAADIIKIAML 831 Query: 511 ---------RAKHQGVLQLWKDLTEGFACVVQEG 535 + + +LQ+ +L A QE Sbjct: 832 RVDARLTAENCQSRVLLQVHDELVLEVASGEQEK 865 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M ++L VHDE+V E V L Sbjct: 818 IQGTAADIIKIAMLRVDARLTAENCQSRVLLQVHDELVLEVASGEQEKVQQLVE 871 >gi|55823653|ref|YP_142094.1| DNA polymerase I [Streptococcus thermophilus CNRZ1066] gi|55739638|gb|AAV63279.1| DNA-directed DNA polymerase I [Streptococcus thermophilus CNRZ1066] Length = 879 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 90/580 (15%), Positives = 185/580 (31%), Gaps = 78/580 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW +E +++ T+ + S+ Q + V F+R + LGID+P+ Sbjct: 337 IIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA+ L + + KG+ + P Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAIPEKEVLL 445 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +H+ + K + + L D E L + + G ++D + ++ Sbjct: 446 SHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKMEMAGIKVDGQTLNEMA 505 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 KL +DI ++ + L + LF G+ L + + + Sbjct: 506 VENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + DG++ ++TGR S Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRY-MQDLTQTGRLSSVDP 623 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P +R + S L+ +D + I Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTKDAVLLSSDYSQI 659 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442 E RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G + + + + + D Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKNKGYVSTLFHRRRELPDI 779 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 S + +++ A+ + G+A +++K A + +++ + + Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVEGGY--------KTKMLLQV 831 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS 578 + VPR + K V + ++ L + + Sbjct: 832 HDEIILEVPRDELLAMKALVKETMEAAVELAVPLIADENE 871 >gi|56421265|ref|YP_148583.1| DNA polymerase I [Geobacillus kaustophilus HTA426] gi|56381107|dbj|BAD77015.1| DNA-directed DNA polymerase I [Geobacillus kaustophilus HTA426] Length = 878 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 351 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 408 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 409 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 464 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 465 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 519 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 520 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 578 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 579 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 631 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 632 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 674 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 675 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 734 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 735 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 794 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 795 NTPIQGSAADIIKKAMIDLN 814 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 687 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 746 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 747 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 806 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 807 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 849 >gi|153953306|ref|YP_001394071.1| DNA polymerase I [Clostridium kluyveri DSM 555] gi|219853937|ref|YP_002471059.1| hypothetical protein CKR_0594 [Clostridium kluyveri NBRC 12016] gi|146346187|gb|EDK32723.1| PolA [Clostridium kluyveri DSM 555] gi|219567661|dbj|BAH05645.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 880 Score = 232 bits (591), Expect = 2e-58, Method: Composition-based stats. Identities = 68/384 (17%), Positives = 140/384 (36%), Gaps = 65/384 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E+ L + ++ G+++D D + +++E E K+ ++I L++ + Sbjct: 479 LYEVEQPLTFVLASMECEGFKVDKDKLTEMEEKFKIEIDKVQKEIYFLSEEEF-NINSPK 537 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + ++ ++ T +L + + I+ + + L Sbjct: 538 QLGKILFEKLDLPVIKKTKTGYSTNADVLERLHGKHPVIEKIIYYRQLTKLYSTYIEGLK 597 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DG++ + TGR S QN+P + Sbjct: 598 GVIEEDGKIHSNFN-QTVTTTGRLSSTEPNLQNIPIKY---------------------- 634 Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R I N ++ AD + IE RVLA I+G++ I AF N DI+ T ++ Sbjct: 635 --EMGKEIRKIFIPDNRDCVILSADYSQIELRVLAHISGDENLINAFINHNDIHTKTASE 692 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTST 471 FN P+ +V+ QR+ K + + Y G A+ + + + Sbjct: 693 VFNVPLGEVTSTQRSNAKAVNFGIVYGIGDFSLARNLNIPRKEAKSYIDAYFEKYPKVKL 752 Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + +S + ++ FA+ + G+A +++K A Sbjct: 753 YMNDIVKQAEKNFYVTTILNRRRFIPEIKSSNKIIKALGERFAMNTPIQGSAADIIKIAM 812 Query: 511 RA----------KHQGVLQLWKDL 524 K + +LQ+ +L Sbjct: 813 VNVFNRLKDNNFKSKIILQVHDEL 836 Score = 41.3 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYF 642 + G + N +Q + DI+ M N + I+L VHDE+V Sbjct: 787 IKALGERFAMNTPIQGSAADIIKIAMVNVFNRLKDNNFKSKIILQVHDELVLNVYKDELK 846 Query: 643 SVGTLCS 649 V + Sbjct: 847 DVKDIVK 853 >gi|319401005|gb|EFV89224.1| DNA polymerase I [Staphylococcus epidermidis FRI909] Length = 876 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 83/529 (15%), Positives = 174/529 (32%), Gaps = 66/529 (12%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 Y + A I + + + + + +L+Q+L D+ + +++ + Sbjct: 328 YLKDA-ILKFGFYTNHQ--HVVINADDVKDYKNLVQWLEDKNTTKIVYDAKK-TYVSAHR 383 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDS 142 LGI+I + + + + S+ + + + ++ K I F KG Sbjct: 384 LGINIENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITVFGKGKKHH 437 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 P + H+ + +++ E + ++ L D E L + + + G D Sbjct: 438 IPEESILNEHIASVTEAISAVTPIMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTD 497 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 ++ + +++ I ++ L +I + + L + LF + ++ ++ Sbjct: 498 INDLKEMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYS 556 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 T +L D IL S + L + +S D R+ A +TGR Sbjct: 557 TAVDVLEKLQGEHPIIDDILEYRQLSKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGR 615 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVV 378 S QN+P + +R S ++ Sbjct: 616 LSSVDPNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILS 651 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE RVLA I ++ AF NG DI+ T K FN D+V R K + Sbjct: 652 ADYSQIELRVLAHITQDESLKHAFINGHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFG 711 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE--------------------- 473 + Y G ++ + + + + Sbjct: 712 IVYGISDYGLSQSLGITRKKAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRR 771 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A + + + Sbjct: 772 YIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820 Score = 40.5 bits (93), Expect = 0.83, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M TK ++L VHDE++ E P + + +M + Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855 >gi|227543926|ref|ZP_03973975.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300909675|ref|ZP_07127136.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] gi|227186077|gb|EEI66148.1| DNA polymerase I [Lactobacillus reuteri CF48-3A] gi|300893540|gb|EFK86899.1| DNA-directed DNA polymerase I [Lactobacillus reuteri SD2112] Length = 888 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 81/503 (16%), Positives = 169/503 (33%), Gaps = 78/503 (15%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN- 103 D +++ L L+ ++V N+ +I+ LGI + + +LA Sbjct: 358 VDLLKEAP----LKDLLQSDSVKKNVFNAK-AQIVGLHRLGIPL--ENINFDLLLASYLL 410 Query: 104 ---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLF 159 + L + + EE + KG+ + P D T +H+ Sbjct: 411 NTNDNSNDLGQVAQEHGYD-DVRTDEEV------YGKGAKRAVPDDDETFFSHLATKARA 463 Query: 160 GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 E+ ++D A + K+ +D E L + + G +D + + + + + Sbjct: 464 IEHLRKDFFAKLDENKQTPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSE 523 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 ++ I + + T L LF + ++ ++ + + + +LA + Sbjct: 524 IESQIYQEAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVD--VLEKLADKSPI 580 Query: 280 NRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 I KL + L + + S+ + T ++TGR S QN+P Sbjct: 581 VEQILEYRQIAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIP--- 637 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393 +R + S G ++ +D + +E RVLA I Sbjct: 638 ---------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHIT 676 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVF 448 G+ + F NGEDI+ +T + F+ D ++ + R K + + Y G A+ Sbjct: 677 GDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVNFGIVYGISDYGLAQRI 736 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QD 487 + +Q + + + A + + Sbjct: 737 HVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYLPDIHAKSFSKRS 796 Query: 488 QYPEFAVKDKLIGTACELVKKAW 510 A+ + G+A +++K A Sbjct: 797 FAERTAMNTPIQGSAADIIKIAM 819 >gi|55821733|ref|YP_140175.1| DNA polymerase I [Streptococcus thermophilus LMG 18311] gi|55737718|gb|AAV61360.1| DNA-directed DNA polymerase I [Streptococcus thermophilus LMG 18311] Length = 879 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 84/521 (16%), Positives = 170/521 (32%), Gaps = 70/521 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW +E +++ T+ + S+ Q + V F+R + LGID+P+ Sbjct: 337 IIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA+ L + + KG+ + P Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAIPEKEVLL 445 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +H+ + K + + L D E L + + G ++D + ++ Sbjct: 446 SHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKMEMAGIKVDGQTLNEMA 505 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 KL +DI ++ + L + LF G+ L + + + Sbjct: 506 VENQAVIDKLTQDIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + DG++ ++TGR S Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRY-MQDLTQTGRLSSVDP 623 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P +R + S L+ +D + I Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTKDAVLLSSDYSQI 659 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442 E RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G + + + + + D Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVSTLFHRRRELPDI 779 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + +++ A+ + G+A +++K A + +++ Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820 >gi|329724656|gb|EGG61162.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU144] Length = 876 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 80/524 (15%), Positives = 169/524 (32%), Gaps = 65/524 (12%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I + + + + E L+Q+L D+ + +++ + LGI+I Sbjct: 332 TILKFGFYTNHQ--HVVINAEDVKDYKHLVQWLEDKNTTKIVYDAKK-TYVSAHRLGINI 388 Query: 89 PSKRWICTSVLARTNGLPSSLKNA-CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + + + S+ + + + ++ K I F KG P + Sbjct: 389 ENIEF-DVMLASYIIDPSRSIDDVKSVVSLYGQNYVKDN-----ITIFGKGKKHHIPEEP 442 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + +++ E + ++ L D E L + + + G D++ + Sbjct: 443 ILNEHIASVTEAIAAVTPTMKSQLEDYNQIELLKDLELPLARILSEMEEIGIYTDINDLK 502 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSI 264 +++ I ++ L +I + + L + LF + ++ ++ T + Sbjct: 503 EMEFEIQKKLDVLISNIHESAGEAF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDV 561 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 L D IL + + L + +S D R+ A +TGR S Sbjct: 562 LEKLQGEHPIIDDILEYRQLAKLQSTYVEGLQKVISKDHRIHTRFNQTLA-QTGRLSSID 620 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAG 383 QN+P + +R S ++ AD + Sbjct: 621 PNLQNIPIR------------------------LEEGRKIRKAFKPTSKDSVILSADYSQ 656 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RVLA I ++ AF N DI+ T K FN D+V R K + + Y Sbjct: 657 IELRVLAHITQDESLKHAFINRHDIHTATAMKVFNVESDQVDSLMRRQAKAVNFGIVYGI 716 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478 G ++ + + + + Sbjct: 717 SDYGLSQSLGITRKQAKAFIDDYLASFPGVKQYMSDIVKDAKAQGYVETLLHRRRYIPDI 776 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A + + + Sbjct: 777 TSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVKFSEKIKETKY 820 Score = 40.5 bits (93), Expect = 0.89, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M TK ++L VHDE++ E P + + +M + Sbjct: 796 IQGSAADIIKLAMVKFSEKIKETKYHAKLLLQVHDELIFEIPKSEVEDFSKFVEEIMEQA 855 >gi|262197787|ref|YP_003268996.1| DNA polymerase I [Haliangium ochraceum DSM 14365] gi|262081134|gb|ACY17103.1| DNA polymerase I [Haliangium ochraceum DSM 14365] Length = 930 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 99/540 (18%), Positives = 186/540 (34%), Gaps = 88/540 (16%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG-I 86 V A+ + P + W SA+P L L D V VAH + + L + Sbjct: 380 PVYLPLAHRYLGVPAQ-W-----SALPEALRALLADPAVEIVAH----DVKSLARLLRTL 429 Query: 87 DIPSKRWI-CTSVLARTNGLPSSLK-----NACLALNFSEHLTKMEEGKALIARFCKGSI 140 D P + T + A G L+ A + + + G++ I F I Sbjct: 430 DAPLAGVLGDTMLAAYLLGQEGKLEVEDVAGAAVGAELPTRKSLLGSGRSKIG-FEAVDI 488 Query: 141 DSPPYDCTRANHVQA--WQLFGE---YCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + A W GE + D A R+L E L LL I Sbjct: 489 SAAAMRAGGAAAAVLASWPRLGEQLEHAGGD-GALRKLHDE------LELPLALLLAEIE 541 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 + G +D+ + L + + + ++ + +L + L LF G+ Sbjct: 542 EHGITLDVPYLRALADELGGQLAGIERQVYELAGEEF-NLGSPKQLGHMLFEKLGLRADK 600 Query: 256 MSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGT 308 M T +H + +A+ + +LKL + L V+ GR+ + Sbjct: 601 MRRTKTGSYSTNHEILESMAESHAIIPPIIEHRELLKLKGTYLDALPPLVNPHTGRIHTS 660 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 + TGR S QN+P ++ +R Sbjct: 661 FN-QAVAATGRLSSQDPNLQNIPIRK------------------------DIGRRIRRAF 695 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A+ GK LV D + IE RV+A ++G++ ++AF N D++ T A+ F+ P +++ ++ Sbjct: 696 VAAPGKTLVSIDYSQIELRVMAHLSGDERLVQAFQNDVDVHTQTAAEVFDLPREEIGPDE 755 Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------- 474 R + K + L Y G A+ + ++++ + + + D Sbjct: 756 RRVAKAVNYGLMYGQSEFGLAQSLGISRAQAAHYMERYFERFSTVRAYMDQVVADARAEG 815 Query: 475 -----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 ++ + + A + G+A +++K A + + D Sbjct: 816 AAVTLLGRRRPIPDLDARNQQRRRAAERVAQNTPVQGSAADIIKLAMLRVAAHLARGEWD 875 Score = 41.3 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 9/71 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654 VQ + DI+ M + ++LTVHDE+V E P+ + + M Sbjct: 850 VQGSAADIIKLAMLRVAAHLARGEWDASMLLTVHDELVFEVVPEQAETFAKAMIAEMEG- 908 Query: 655 PSWAKGLPLKA 665 ++A +PL A Sbjct: 909 -AYALDVPLVA 918 >gi|313906066|ref|ZP_07839418.1| DNA polymerase I [Eubacterium cellulosolvens 6] gi|313469111|gb|EFR64461.1| DNA polymerase I [Eubacterium cellulosolvens 6] Length = 885 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 131/365 (35%), Gaps = 58/365 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G R+ D + E + + +L+ I + + L Sbjct: 487 EVEMPLVYTLCHMEEAGIRVLPDELETYGENLKEGIARLETSIYEAAGEKF-NINSPKQL 545 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASSGSAILKLNTLS 296 + LF + ++ + + +LA D+ IL + + L+ Sbjct: 546 GVILFEKMQLPGGKKTKTG--YSTAADVLEKLAVDVPFVADILEYRQLTKLKSTYADGLA 603 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 +++DGR+ T + + TGR S QN+P + Sbjct: 604 ACIAADGRIHTTFK-QTITATGRISSTEPNLQNIPTR----------------------- 639 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R C + +G V AD + IE RVLA ++G++ I+A+ + EDI+ T ++ Sbjct: 640 -IELGRQIRKCFVPQDGFVFVDADYSQIELRVLASLSGDEKLIEAYRDAEDIHAITASQV 698 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTF 472 F+ P+ +V+ R K + + Y A + + + + Sbjct: 699 FHVPLSEVTPLMRRNAKAVNFGIVYGISAHGLSEDLNISRKEAQEYIDSYYEAYPGIRGY 758 Query: 473 ED--------WEQAESHHL------------WMQDQY-PEFAVKDKLIGTACELVKKAWR 511 + E +E+++ +MQ Q+ A + GTA +++K A Sbjct: 759 LESLVETAKKKEYSETYYGRRRPMPELSSGNFMQRQFGERVAKNAPIQGTAADIIKIAMN 818 Query: 512 AKHQG 516 Q Sbjct: 819 RVDQR 823 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 27/106 (25%) Query: 569 VYSDVKGDCSYLNTATSQLMRERTY--------------------GGKLTENI-VQAISR 607 Y ++G L + TY G ++ +N +Q + Sbjct: 751 AYPGIRGYLESLVETAKKKEYSETYYGRRRPMPELSSGNFMQRQFGERVAKNAPIQGTAA 810 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 DI+ M + ++L VHDE++ ET + V + Sbjct: 811 DIIKIAMNRVDQRLQEEGLKSRLLLQVHDELLLETAEDELERVREI 856 >gi|196249912|ref|ZP_03148607.1| DNA polymerase I [Geobacillus sp. G11MC16] gi|1205984|gb|AAB52611.1| DNA polymerase I [Geobacillus stearothermophilus] gi|196210426|gb|EDY05190.1| DNA polymerase I [Geobacillus sp. G11MC16] Length = 876 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 86/499 (17%), Positives = 169/499 (33%), Gaps = 76/499 (15%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + S L +L DET ++ + K GI++ +LA P+ Sbjct: 349 ETALADSQFLAWLADETKKKSMFDAKRAVVALK-WKGIELR--GVAFDLLLAAYLLNPAQ 405 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 A+ + + E ++ A + KG S P + T A H+ W L + Sbjct: 406 DAGDIAAV---AKMKQYEAVRSDEAVYGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF- 461 Query: 164 KRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +L L+ E+ L + + G +D + ++ +A++ + ++ Sbjct: 462 ------MDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIE 515 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278 + I +L + L + LF + ++ ++ T +L + I Sbjct: 516 QRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENI 574 Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ + L + V D G++ ++TGR S QN+P + Sbjct: 575 LHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---- 629 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGED 396 +R + S L+ AD + IE RVLA IA +D Sbjct: 630 --------------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDD 669 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+AF DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 670 NLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITR 729 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 ++++ + + + S + ++ Sbjct: 730 KEAAEFIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAER 789 Query: 492 FAVKDKLIGTACELVKKAW 510 A+ + G+A +++KKA Sbjct: 790 TAMNTPIQGSAADIIKKAM 808 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + L +M + Sbjct: 796 IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQA 855 >gi|315122837|ref|YP_004063326.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496239|gb|ADR52838.1| DNA polymerase I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 727 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 86/502 (17%), Positives = 175/502 (34%), Gaps = 69/502 (13%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS-- 108 + S L + +E ++ + HN +++++ ++ GI I I +G S Sbjct: 195 EEILSYLKKIFENEHLLKIGHNIKYDKLVLQRY-GIIIRGFEDIMLMSYVLDSGRYSHDI 253 Query: 109 --LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKR 165 + L + ++ GK I+ + Y ++N +Q W L K Sbjct: 254 ANIAKKWLFYDLITRKEMLKTGKRSISIDQISNSRIQEYVVEKSNVILQLWLLL--RAKL 311 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E +++RL ++ + + + G +ID L+ ++ I+++ L+E I Sbjct: 312 IAEKLLHVYERL------DKPMIDIVAQMETTGIQIDRQLLAQVSSEISKDLLCLEEKIH 365 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQ-LAKDLILN 280 L + L LF ++ T L N + + IL Sbjct: 366 NLAGEKF-NISSPKQLGDILFTKLKFPGGTKTKKGQWKTTAQDLEQINCQDNILIEHILE 424 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 S ++L ++ + T ++ TGR + QN+P Sbjct: 425 WRRFSKIKSTYADSLPNHINQRTQRVHTFYSLASTMTGRLASLEPNLQNIP--------- 475 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA KKL+ AD + IE R+LA +A + + Sbjct: 476 ---------------VKTNLGKKIRRAFIAPPTKKLISADYSQIELRILAHVAQINPLYQ 520 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCG 456 AF N DI+ ++ F I++VS R K + ++ Y A K S Sbjct: 521 AFKNSLDIHTLVASEIFGVKIEEVSSHMRQHAKTINFSIIYGISPFRLANQLKIKRSEAT 580 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 +Q++ + + +++ S + +++ A+ Sbjct: 581 DYIQRYFDRFPGIHEYIEKTKNFARKNSYVETIFGRRIYYDEINSPKVSIRNLNERAAIN 640 Query: 496 DKLIGTACELVKKAWRAKHQGV 517 + G+A ++ ++A H+ + Sbjct: 641 APIQGSAADITRRAMILVHKSI 662 >gi|309799219|ref|ZP_07693468.1| DNA polymerase I [Streptococcus infantis SK1302] gi|308117153|gb|EFO54580.1| DNA polymerase I [Streptococcus infantis SK1302] Length = 680 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 88/592 (14%), Positives = 194/592 (32%), Gaps = 89/592 (15%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + + +L+ ++T + V ++ ++L + G+D+ + Sbjct: 140 FAWSCGD---KLYATDKLELLQNPILKDFLEKTPLKV-YDFKKAKVLLNR-FGLDLQAPA 194 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + S LA+ + +++ + KG + P T H Sbjct: 195 F--DSRLAKYLLSTVENNEISTIASLYGQTYLVDD----ETFYGKGVKKAIPERETFLEH 248 Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + VE L ++L L D E+ L + + G ++ + + Sbjct: 249 L------ARKVAVLVETEPVLLEKLSENGQLNLLYDMEQPLAFVLAKMEIAGIKVKKETL 302 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L++Q +KL ++I +L + L LF G + + + Sbjct: 303 LEMQAGNELVIEKLTQEIYELAGEEF-NINSPKQLGELLFENLGFPIEYTKKTKTGYSTA 361 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +LA + + I K+ + L + + +DG++ ++TGR S Sbjct: 362 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 420 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 421 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 456 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + + Sbjct: 457 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 516 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474 Y G + + + + + D Sbjct: 517 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 576 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 S + ++ A+ + G+A +++K A + ++ + Sbjct: 577 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 628 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + V VP+ + K+ V + + +L + + + ++ Sbjct: 629 LLQVHDEIVLEVPKSELAAIKKIVKQTMEEAIQLSVPLIADENEGVTWYEAK 680 >gi|167040779|ref|YP_001663764.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300914817|ref|ZP_07132133.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307723949|ref|YP_003903700.1| DNA polymerase I [Thermoanaerobacter sp. X513] gi|166855019|gb|ABY93428.1| DNA polymerase I [Thermoanaerobacter sp. X514] gi|300889752|gb|EFK84898.1| DNA polymerase I [Thermoanaerobacter sp. X561] gi|307581010|gb|ADN54409.1| DNA polymerase I [Thermoanaerobacter sp. X513] Length = 872 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 88/546 (16%), Positives = 189/546 (34%), Gaps = 87/546 (15%) Query: 11 RSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 S + K + + + I A+++ ++ V D + DL + Sbjct: 300 WSKVDIKKLIALLQDSKSIAFYPLIYEGEIKKIAFSFGNDTVY-IDGFQI----KDLKEI 354 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN--- 117 E H + ++ GI+ SK ++ T+++A S + L Sbjct: 355 FEKEKFEFTTHEIK-DFLVKLSYKGIECKSK-YMDTAIMAYLLNPSESNYDLDRVLKKYL 412 Query: 118 ---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + +G+ G Y C+R H+ + +++ + L Sbjct: 413 KVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMD-MKRL- 470 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L + E L + +++ G+ +D +++ +L + I ++ + I K + Sbjct: 471 -----LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-N 524 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGSAIL 290 L +LF + ++ ++ T +L + D+I R + Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKST 583 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ + + R+ + + TGR S QN+P +E Sbjct: 584 YIDGFLPLMDENNRVHSNFK-QMVTSTGRISSTEPNLQNIPIRE---------------- 626 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +V AD + IE RVLA ++G++ I++F N EDI+ Sbjct: 627 --------EFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 + T ++ F P++KV+ E R + K + + Y G ++ K + + + Sbjct: 679 LRTASEVFKVPMEKVTPEMRRVAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFER 738 Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 K + + + S + + Q A+ + G+A + Sbjct: 739 YKGVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAAD 798 Query: 505 LVKKAW 510 ++K A Sbjct: 799 IIKMAM 804 Score = 38.6 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 67/203 (33%), Gaps = 23/203 (11%) Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523 + S + + +H + F + + + TA E+ K + ++ K Sbjct: 644 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRVAKA 703 Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR-------DVHIVLPSSRRLVYS 571 + G + + G IS + R+K V + + Sbjct: 704 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIM 763 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDI 624 + + Y+ S+ +R+ +L N +Q + DI+ M K + Sbjct: 764 NRR---RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLKLKSKL 820 Query: 625 VLTVHDEIVSETPDTPYFSVGTL 647 +L VHDE+V +T V + Sbjct: 821 ILQVHDELVVDTYKDEVEIVKKI 843 >gi|71892386|ref|YP_278120.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796492|gb|AAZ41243.1| DNA polymerase I [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 936 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 88/553 (15%), Positives = 172/553 (31%), Gaps = 99/553 (17%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + S L L +E + V + F + K+ +I +L L Sbjct: 406 EEILSILQPTLENEKIKKVGQHLKFSYSILKRY---NINLAGMAFDVILELYI-----LY 457 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----HVQAWQLFGEYCKRD 166 + L K F + YD N +Q QL Y + Sbjct: 458 GTANYHDIKNFLDKDT--------FNVVTNFKKNYDNYNENNILSDLQNIQLQSLYAAKF 509 Query: 167 VEATRELFKRLIP-----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 +++ L L P + E L + I + G ID L+ + Sbjct: 510 IKSLFNLHHTLWPKIEANNKLKKIFEEVEMPLISILSRIENYGVLIDKKLLNTHAVELDY 569 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 L+ + +L + T L+ L+ + ++ + S + + +L+K Sbjct: 570 RLHALELEAYQLVGTPFNLA-STKQLQEILYNQQKLPILKKTPKGAPST-NEEVLKKLSK 627 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQN 329 + R+ A+ KL N L ++ R+ + + TGR S QN Sbjct: 628 KYSMPRIILQYRALSKLQSTYINKLIAMINKKSNRVHTSYN-QTRTSTGRLSSTSPNLQN 686 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R IA +V AD + IE R++ Sbjct: 687 IPNRNYD------------------------GRKIRQAFIAPKNFLIVAADYSQIELRIM 722 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 A ++ + I F + +DI+ T ++ F T + V+ EQR K + L Y A Sbjct: 723 AHLSQDIELINDFLSEKDIHTATASEIFVTALHLVTDEQRQRAKTINFGLIYGMSAFGLA 782 Query: 450 TMA----SHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQY----- 489 + ++ + + L++ D Y Sbjct: 783 RQLSVTCKEAQKYVDRYFNRYPGVMKYMQHIREHANKYGYVSTLDGRRLYLPDIYSANIL 842 Query: 490 -----PEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQE 534 A+ + G+A +++KKA + + ++Q+ +L + + Sbjct: 843 QKKGAERAAINAPMQGSAADIIKKAMISIDNWLQKDEIPARIIMQVHDELVFEVHNDIVD 902 Query: 535 GGSISARRVANVP 547 +++ Sbjct: 903 PVVKKIKKLMEEC 915 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 18/121 (14%) Query: 541 RRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGKLTE 599 V + + + ++ RRL D+ N + R Sbjct: 804 PGVMKYMQHIREHANKYGYVSTLDGRRLYLPDIYSA----NILQKKGAERAAINAP---- 855 Query: 600 NIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSET-PDTPYFSVGTLCSLMT 652 +Q + DI+ + M + I++ VHDE+V E D V + LM Sbjct: 856 --MQGSAADIIKKAMISIDNWLQKDEIPARIIMQVHDELVFEVHNDIVDPVVKKIKKLME 913 Query: 653 K 653 + Sbjct: 914 E 914 >gi|138896291|ref|YP_001126744.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] gi|134267804|gb|ABO67999.1| DNA polymerase I [Geobacillus thermodenitrificans NG80-2] Length = 878 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 86/499 (17%), Positives = 169/499 (33%), Gaps = 76/499 (15%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + S L +L DET ++ + K GI++ +LA P+ Sbjct: 351 ETALADSQFLAWLADETKKKSMFDAKRAVVALK-WKGIELR--GVAFDLLLAAYLLNPAQ 407 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 A+ + + E ++ A + KG S P + T A H+ W L + Sbjct: 408 DAGDIAAV---AKMKQYEAVRSDEAVYGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF- 463 Query: 164 KRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +L L+ E+ L + + G +D + ++ +A++ + ++ Sbjct: 464 ------MDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIE 517 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278 + I +L + L + LF + ++ ++ T +L + I Sbjct: 518 QRIYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENI 576 Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ + L + V D G++ ++TGR S QN+P + Sbjct: 577 LHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFN-QALTQTGRLSSAEPNLQNIPIR---- 631 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGED 396 +R + S L+ AD + IE RVLA IA +D Sbjct: 632 --------------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDD 671 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+AF DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 672 NLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITR 731 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 ++++ + + + S + ++ Sbjct: 732 KEAAEFIERYFASFPGVKQYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAER 791 Query: 492 FAVKDKLIGTACELVKKAW 510 A+ + G+A +++KKA Sbjct: 792 TAMNTPIQGSAADIIKKAM 810 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + L +M + Sbjct: 798 IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQA 857 >gi|225027062|ref|ZP_03716254.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] gi|224955526|gb|EEG36735.1| hypothetical protein EUBHAL_01318 [Eubacterium hallii DSM 3353] Length = 878 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 72/410 (17%), Positives = 140/410 (34%), Gaps = 73/410 (17%) Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + + ++ EA E ER + G ++ D + + + + Sbjct: 458 PFHAYPLVLEKLREAEMEEL-----YLTIERPTVATLYDMEKYGITVEKDALKEYGDQLV 512 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 ++L+++I + + L + LF + ++ S + +LA Sbjct: 513 GRIEELEKNIYEQAGKTF-NINSPKQLGVILFEDLKMPFAKKTKTG--YSTSADILEKLA 569 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D + + KL + L+ + DG++ + TGR S QN Sbjct: 570 PDYPIVSNILEYRQLTKLKSTYADGLAAFIQEDGKIHSIF-HQKVTATGRLSSSDPNLQN 628 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P I PLG +R + +G V AD + IE RVL Sbjct: 629 IP---------------------IRMPLG---RAIRKVFVPDSGYVFVSADYSQIELRVL 664 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A +AG++ I A+ +GEDI+ T ++ F P ++V+ R K + + Y G + Sbjct: 665 AHMAGDEHLIDAYRHGEDIHRMTASQVFGVPFEEVTPLLRRSAKAVNFGIVYGISAFGLS 724 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484 + K + ++ T+ D A + + Sbjct: 725 QDLKISRKEASEYIDKYFATYPGIKTYLDGNVAFAKKEGYVKTLYGRVRPIPELSSSNFM 784 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + A+ + GTA +++K A + +LQ+ +L Sbjct: 785 QRSFGERVAMNSSIQGTAADIIKIAMIRVSKRLQEEKLASRLILQIHDEL 834 Score = 44.0 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M K ++L +HDE++ ET + Sbjct: 785 QRSFGERVAMNSSIQGTAADIIKIAMIRVSKRLQEEKLASRLILQIHDELLIETKEDEVE 844 Query: 643 SVGTL--CSLMTKN 654 V + +M Sbjct: 845 EVRKILKEEMMGAA 858 >gi|308276303|gb|ADO26202.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium pseudotuberculosis I19] Length = 886 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 68/400 (17%), Positives = 134/400 (33%), Gaps = 61/400 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L L+ + G +D++ + + ++ + ++ + + + L Sbjct: 484 DLELPLVLILARMEAAGIAVDVETLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQL 543 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----LSE 297 ++ LF G+ ++ + + + KL T L + Sbjct: 544 QVVLFETLGLPKTKKTKTGYSTAAKEIEALAVKHPDPFLDHLLAHRENQKLKTTLEGLIK 603 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 AV SDGR+ T AS TGR S QN+P + + Sbjct: 604 AVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTQD--------------------- 641 Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +RS + G L+ AD + IE RV+A ++ + I+A+ GED++ ++ Sbjct: 642 ---GRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRV 698 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P+D+V+ E R K M L Y A + A + + + + Sbjct: 699 FEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSYFERFGGVKQY 758 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D ++ + ++ A+ + GTA +++K A Sbjct: 759 LDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGTAADIIKVAMI 818 Query: 512 AKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 Q V ++ + + + R + Sbjct: 819 RVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVE 858 Score = 44.0 bits (102), Expect = 0.090, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 87/270 (32%), Gaps = 26/270 (9%) Query: 396 DWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IKA + I+ T T + P + + G+ + A G + Sbjct: 599 EGLIKAVGSDGRIHTTFNQTVASTGRLSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETL 658 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++++ + + E + Q E H + V ++ + V Sbjct: 659 LT-ADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNY---------VGSRVFEVPVDQVTP 708 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R + + + F Q A+++ K+ + V+ +R+ Sbjct: 709 ELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSYFERFGGVKQYLDNVVEQARK 768 Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT----KNG 621 ++ G YL S R + N +Q + DI+ M K G Sbjct: 769 DGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDQELKKAG 828 Query: 622 Y--DIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++L VHDE+V E V + Sbjct: 829 VVSRVLLQVHDELVVEIAPNELEQVREIVE 858 >gi|254456142|ref|ZP_05069571.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] gi|207083144|gb|EDZ60570.1| DNA polymerase I [Candidatus Pelagibacter sp. HTCC7211] Length = 924 Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats. Identities = 87/506 (17%), Positives = 166/506 (32%), Gaps = 71/506 (14%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 ++ + L L D +V + N F+ I+ K GI++ S G Sbjct: 386 CINKNDVIKKLKPLLEDPSVKKIGQNIKFDFIVLFKQ-GIEMTSMEDTMLMSYVLDAGKN 444 Query: 107 SS----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGE 161 L L + GK I + Y A+ + ++ F + Sbjct: 445 RHNMDTLSEIHLGHKTISFKEIVGTGKKEINFSDVEIERAKDYAAEDADITFRLYKKFSK 504 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 K +E +++ E+ L + + G +D + L ++ K L+ Sbjct: 505 NLK--LEKMINIYEIF------EKPLIKILAFMEMEGVEVDNKFLKTLSSKFEKKIKNLE 556 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA-KDLILN 280 ++I K++ + L ++ I + ++ S S + LA K Sbjct: 557 KEIFKISKKDFNIA-SPKQLGEIIYNDLKIAELKKTKKG-SFATSASVLEDLAFKGHKFP 614 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L + KL ++L E ++ + + T A+ TGR + QN+P + Sbjct: 615 KLVLDWRQVSKLKNTYSDSLPEHINPNTKRVHTSFLLAATTTGRLASSDPNLQNIPIKSE 674 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R + L+ AD IE R+LA +A Sbjct: 675 D------------------------GRDIRKAFTSRKNHLLISADYNQIEMRILADLADV 710 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 KAF N EDI+ T ++ FN I KV ++QR K + + Y G AK Sbjct: 711 KELKKAFKNDEDIHSLTASQIFNVDIKKVDQDQRRKAKAINFGIIYGISQYGLAKQINVS 770 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 L + + + + + +++ Sbjct: 771 NYEAEEFLDAYFAKFPEIKIYMNDTIKFCRKSGYVNNIFGRRSHFNGINDKNFNVRNFQE 830 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQG 516 A+ + G+A E+++ A ++ Sbjct: 831 RAAINAPIQGSASEIMRLAMIRLNKK 856 >gi|167045540|gb|ABZ10192.1| putative DNA polymerase family A [uncultured marine microorganism HF4000_APKG10H12] Length = 891 Score = 231 bits (590), Expect = 3e-58, Method: Composition-based stats. Identities = 118/626 (18%), Positives = 194/626 (30%), Gaps = 138/626 (22%) Query: 60 YLRDETVMCVAHNSLFERILFK------KTLGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 L D V + H+ + + + L +D ++ + +L++A Sbjct: 373 MLEDPQVRKIGHDLKRDMLWLAAHEIRLRGLELDTMIASYLLDATRTTPTVETVALEHAG 432 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 AL K + Y C RA+ + D E E Sbjct: 433 YQALTADTVRGKGAKAPDFDRL---PPDGVLAYACERADLPLQAAE-PLRARLDQERLAE 488 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L++ L E+ L + I G ++ D + + + +L I L Sbjct: 489 LYREL------EQPLIPVLADIETAGIQVATDALAVQSRRMDADLSELQSQIYTLAGEEF 542 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + L LF + + T + + + +LA+ L RL A+ KL Sbjct: 543 -NINSPRQLSAILFEKLALPTRKKTGKTRAASTAADVLEELAQHHALPRLVIEWRAVQKL 601 Query: 293 -----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L + V D GR+ + + TGR S QN+P Sbjct: 602 KGTYVDALPQLVRPDTGRVHTSFN-QAVAATGRLSSSDPNLQNIP--------------- 645 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 I PLG +R +A +G L+ AD + IE RVLA ++ + +AF E Sbjct: 646 ------IRTPLG---REIRRAFVARDGHVLISADYSQIELRVLAHLSADTALTQAFIRNE 696 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNV 466 DI+ T F + E R K++ AL Y K T++ G+ Q Sbjct: 697 DIHDKTALHVFGPDSGLDAHELRRRAKIINYALLYG---KTAFTLSRDIGVTPQ------ 747 Query: 467 KSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTE 526 A + A+ + V + + Sbjct: 748 -----------------------------------AAQAFIDAYFEGYPAVRGFLDGVID 772 Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 +E G + R + RLV R+ I + R Sbjct: 773 EA----RESGEV--RTMFGRRRLVPELRNRNGQIRAAAERVT------------------ 808 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFS 643 +Q + DIL M + ++LTVHDE++ E P S Sbjct: 809 -----------VNMPIQGTAADILKRAMIDLAGALPPSAPMILTVHDELLIEPPRDEADS 857 Query: 644 VGTLC-SLMTKNPSWAKGL--PLKAE 666 V L M + A L PL+ + Sbjct: 858 VADLVRDRMER----AADLTVPLRVD 879 >gi|300858348|ref|YP_003783331.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|300685802|gb|ADK28724.1| DNA polymerase I [Corynebacterium pseudotuberculosis FRC41] gi|302206066|gb|ADL10408.1| DNA polymerase I [Corynebacterium pseudotuberculosis C231] gi|302330617|gb|ADL20811.1| DNA polymerase I [Corynebacterium pseudotuberculosis 1002] Length = 886 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 68/400 (17%), Positives = 134/400 (33%), Gaps = 61/400 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L L+ + G +D++ + + ++ + ++ + + + L Sbjct: 484 DLELPLVLILARMEAAGIAVDVETLEEQLKVFIERVQEHEAAARNIAGDPSLNLSSPKQL 543 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----LSE 297 ++ LF G+ ++ + + + KL T L + Sbjct: 544 QVVLFETLGLPKTKKTKTGYSTAAKEIEALAVKHPDPFLDHLLAHRENQKLKTTLEGLIK 603 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 AV SDGR+ T AS TGR S QN+P + + Sbjct: 604 AVGSDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTQD--------------------- 641 Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +RS + G L+ AD + IE RV+A ++ + I+A+ GED++ ++ Sbjct: 642 ---GRRIRSAFVVGEGYETLLTADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNYVGSRV 698 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P+D+V+ E R K M L Y A + A + + + + Sbjct: 699 FEVPVDQVTPELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSYFERFGGVKQY 758 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D ++ + ++ A+ + GTA +++K A Sbjct: 759 LDNVVEQARKDGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGTAADIIKVAMI 818 Query: 512 AKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 Q V ++ + + + R + Sbjct: 819 RVDQELKKAGVVSRVLLQVHDELVVEIAPNELEQVREIVE 858 Score = 44.0 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 45/270 (16%), Positives = 87/270 (32%), Gaps = 26/270 (9%) Query: 396 DWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IKA + I+ T T + P + + G+ + A G + Sbjct: 599 EGLIKAVGSDGRIHTTFNQTVASTGRLSSTEPNLQNIPVRTQDGRRIRSAFVVGEGYETL 658 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++++ + + E + Q E H + V ++ + V Sbjct: 659 LT-ADYSQIEMRVMAHLSEDPGLIEAYRQGEDLHNY---------VGSRVFEVPVDQVTP 708 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R + + + F Q A+++ K+ + V+ +R+ Sbjct: 709 ELRRRVKAMSYGLVYGLSAFGLGQQLNIPAGEAKQIMTSYFERFGGVKQYLDNVVEQARK 768 Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT----KNG 621 ++ G YL S R + N +Q + DI+ M K G Sbjct: 769 DGFTSTLFGRRRYLPELGSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDQELKKAG 828 Query: 622 Y--DIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++L VHDE+V E V + Sbjct: 829 VVSRVLLQVHDELVVEIAPNELEQVREIVE 858 >gi|108759777|ref|YP_631312.1| DNA polymerase I [Myxococcus xanthus DK 1622] gi|108463657|gb|ABF88842.1| DNA polymerase I [Myxococcus xanthus DK 1622] Length = 908 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 97/568 (17%), Positives = 188/568 (33%), Gaps = 97/568 (17%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 A + + L D V H+ ++ GI + L PS + Sbjct: 380 EAFTAAFREVLEDAAVKKGGHDLKALSLVLAND-GITLHGA--HDDVELLSYLLNPSRRE 436 Query: 111 NACLALNFSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 +A + L+ T++ EGK D A+H ++ + Sbjct: 437 HALVDLSRERLNTELPPLPPAAEGKRGKK------------DRALADHTVE-EVATGFAI 483 Query: 165 RDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 R EA R L L D E L L + RG +D + + + Sbjct: 484 R-AEAARRLAPELWKELEAAKLAALARDMELPLLPLLAQMERRGVLLDTAELSRTSVKVD 542 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + +++ + + L LF + ++ + + +L+ Sbjct: 543 AAVEAQVKEVYRHAGREF-NIGSNPQLVEVLFTELKLPIIKRGKTG--PSADQEVLEKLS 599 Query: 275 KDLILNRLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQN 329 ++ L ++ KL +TL V++DGR+ T A+ TGR S QN Sbjct: 600 EEHPLPGAIIEYRSLSKLKSTYLDTLPTLVAADGRIHTTY-HQAATATGRLSSTDPNLQN 658 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + +R +A+ G +LV AD + +E R+L Sbjct: 659 IPVRT------------------------DLGREIRRAFVAAEGHQLVSADYSQVELRLL 694 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG---GAK 446 A IA + I+AF + EDI+ T A+ F ++V +EQR + K++ + Y G Sbjct: 695 AHIANDPVLIEAFLHDEDIHTRTAAEVFGVAKEQVDREQRRVAKMVNFGIAYGLSPHGLG 754 Query: 447 VFKTMASHCGLD-LQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484 +A D ++++ + + + + Sbjct: 755 ARLGIAQDVARDIIERYFTRYAGIRRYLEETVDRARKTGYVETLYGRRRYMADLNSKNRG 814 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSI 538 + A+ + GTA +L+KKA A + ++ + + + Sbjct: 815 VAQAAERAAINMPIQGTAADLIKKAMLAVDEALTAQKLRTRMLLQVHDELLFEAPDAEVE 874 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSR 566 + +A + K + + + + R Sbjct: 875 QVKALAVKAMSSVADLKVPLKVEVGAGR 902 >gi|295102397|emb|CBK99942.1| DNA polymerase I [Faecalibacterium prausnitzii L2-6] Length = 861 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 81/415 (19%), Positives = 143/415 (34%), Gaps = 67/415 (16%) Query: 145 YDCTRANHVQAW----QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 Y A + W L + K E T L +D E L + + G Sbjct: 424 YRADAAFTCEKWPDAGALADLFAKMKTEITALEEDSLY--NDIEFPLAQVLADMTRIGIL 481 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-- 258 +D + + K + E + + I T + L LF G+ ++ Sbjct: 482 VDKEGIEKFGVKMRSELEDVLTRIHMETGSASFNPNSPKQLGEMLFDTMGLPHGKKTQRG 541 Query: 259 -GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRT 317 T L L +D++ R A + L + ++ DGR+ A RT Sbjct: 542 WSTDAETLEALRDYPLVEDILQYR-AYQKLNSTYVEGLLKVIAEDGRIHTRFNQTEA-RT 599 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P + +R+ +A G LV Sbjct: 600 GRLSSDNPNLQNIPIRT------------------------ELGSQLRAYFVARPGCVLV 635 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R+LA + G++ +AF GEDI+ +T AK + P+++V+ R+ K + Sbjct: 636 DADYSQIELRILAHVTGDEHMQQAFLTGEDIHRSTAAKIYGLPLEQVTPRLRSSAKAINF 695 Query: 438 ALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------ 481 + Y GA K L+ + S + D +++ Sbjct: 696 GIMYGKGAYSLSKDIGVSVKEADAFLKNYLATFPKVSGYMDKTISDARSCGYVSTLFGRR 755 Query: 482 ---------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + ++ A + GTA +++K A +++W+ L + Sbjct: 756 RSLPELASNNHNIRASGERMARNTPIQGTAADVIKLAM-------VRVWRRLRDE 803 >gi|167037882|ref|YP_001665460.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116299|ref|YP_004186458.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856716|gb|ABY95124.1| DNA polymerase I [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929390|gb|ADV80075.1| DNA polymerase I [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 872 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 89/546 (16%), Positives = 188/546 (34%), Gaps = 87/546 (15%) Query: 11 RSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 S + K + + + I A+++ ++ V D + DL + Sbjct: 300 WSKVDIKKLIALLQDSKSIAFYPLIYEGEIKKIAFSFGNDTVY-IDGFQI----KDLKEI 354 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN--- 117 E H + ++ GI+ SK ++ T+++A S + L Sbjct: 355 FEKEKFEFTTHEIK-DFLVKLSYKGIECKSK-YMDTAIMAYLLNPSESNYDLDRVLKKYL 412 Query: 118 ---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + +G+ G Y C+R H+ + +++ + L Sbjct: 413 KVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMD-MKRL- 470 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L + E L + +++ G+ +D +++ +L + I ++ + I K + Sbjct: 471 -----LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-N 524 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGSAIL 290 L +LF + ++ ++ T +L + D+I R + Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKST 583 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 +N + + R+ + + TGR S QN+P +E Sbjct: 584 YINGFLPLMDENNRVHSNFK-QMVTSTGRISSTEPNLQNIPIRE---------------- 626 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +V AD + IE RVLA ++G++ I++F N EDI+ Sbjct: 627 --------EFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 + T ++ F P++KV+ E R K + + Y G ++ K + + + Sbjct: 679 LRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFER 738 Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 K + + + S + + Q A+ + G+A + Sbjct: 739 YKGVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAAD 798 Query: 505 LVKKAW 510 ++K A Sbjct: 799 IIKMAM 804 Score = 37.4 bits (85), Expect = 8.2, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 23/203 (11%) Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523 + S + + +H + F + + + TA E+ K + + K Sbjct: 644 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKA 703 Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR-------DVHIVLPSSRRLVYS 571 + G + + G IS + R+K V + + Sbjct: 704 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIM 763 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDI 624 + + Y+ S+ +R+ +L N +Q + DI+ M K + Sbjct: 764 NRR---RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLKLKSKL 820 Query: 625 VLTVHDEIVSETPDTPYFSVGTL 647 +L VHDE+V +T V + Sbjct: 821 ILQVHDELVVDTYKDEVEIVKKI 843 >gi|295098757|emb|CBK87846.1| DNA polymerase I [Eubacterium cylindroides T2-87] Length = 687 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 77/510 (15%), Positives = 169/510 (33%), Gaps = 65/510 (12%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWIC 95 +++E V L+ + E + S L+ ET + ++ L ++ + + Sbjct: 157 FNNEEV-LYLKVEDALEDSYFKNMLKHETSLRT-WDAKEMMHLLQRYGFYVPSFKEDLHL 214 Query: 96 TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 + L + + + L + E I K + R V Sbjct: 215 AAFLLHSQATDTDSLISSLGIELPET----------IHDLLKKAKTVEACHIDRLLPVTC 264 Query: 156 -WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 W + ++ + L + E+ L + + ++G ID +++ ++ Sbjct: 265 AWTWQLSIRQDNIFDELKKDNLLDLYENIEKPLVRILFEMENQGIHIDENVLDEIGAKTD 324 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + L + I ++ ++ + L L+ + T +L + Sbjct: 325 TILESLTQQIHEMA-HMVFNINSPKQLAGVLYDELNLKGGGKKRSTSAEVLEKLKGSHPI 383 Query: 275 KDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 D++L+ S + L + + D ++ ++TGR S QN+ Sbjct: 384 IDVLLDYRKYSKIKSTYIEGLKKHIQQDSKIHTCFN-QAMTQTGRLSSSDPNLQNIS--- 439 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R +A G KL+ AD + IE R+LA +A Sbjct: 440 ---------------------VRDEQGREIRKAFVAQKGYKLLSADYSQIELRMLAHMAN 478 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 E I+AF G DI+ T + F+ + V+ + R + K + + Y G ++ K Sbjct: 479 ETHMIEAFKEGADIHNRTASHIFHVSQEDVTPDMRRVAKTVNFGIVYGQTEFGLSQQLKI 538 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 G ++ + + + F + + + ++ Sbjct: 539 SRKEAGEFMETYFASYPNIHQFMNQLIDFCKENGYVETMFHRRRMIPEINDKNFMTREFG 598 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + G+A +L+K A Q + + Sbjct: 599 KRAAMNAPIQGSAADLIKIAMIRVDQAMKE 628 >gi|282919455|ref|ZP_06327190.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] gi|282317265|gb|EFB47639.1| DNA polymerase I [Staphylococcus aureus subsp. aureus C427] Length = 876 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 90/573 (15%), Positives = 193/573 (33%), Gaps = 72/573 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + ++L+ +L + V +++ + LGIDI + + + Sbjct: 341 GEKHIVINADDIINYAELVSWLENPNTKKVVYDAKK-TYVASHRLGIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEVDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGFVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 A+ + G+A +++K A Q + K+ T ++Q + + VP+ Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKM----KETTYQAKLLLQ----VHDELIFEVPKS 839 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 + V ++ ++ +L +K D SY T Sbjct: 840 EVDSFSEFVEEIMENALQLDVP-LKVDSSYGAT 871 >gi|256750990|ref|ZP_05491873.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] gi|256750100|gb|EEU63121.1| DNA polymerase I [Thermoanaerobacter ethanolicus CCSD1] Length = 872 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 88/546 (16%), Positives = 188/546 (34%), Gaps = 87/546 (15%) Query: 11 RSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY 60 S + K + + + I A+++ ++ V D + DL + Sbjct: 300 WSKVDIKKLIALLQDSKSIAFYPLIYEGEIKKIAFSFGNDTVY-IDGFQI----KDLKEI 354 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN--- 117 E H + ++ GI+ SK ++ T+++A S + L Sbjct: 355 FEKEKFEFTTHEIK-DFLVKLSYKGIECKSK-YMDTAIMAYLLNPSESNYDLDRVLKKYL 412 Query: 118 ---FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + +G+ G Y C+R H+ + +++ + L Sbjct: 413 KVDVPSYEEVFGKGRDKKKLEEIGEDILADYICSRCVHLFDLREKLMNFIEEMD-MKRL- 470 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L + E L + +++ G+ +D +++ +L + I ++ + I K + Sbjct: 471 -----LLEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKINDRIAEILDKIYKEAGYQF-N 524 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGSAIL 290 L +LF + ++ ++ T +L + D+I R + Sbjct: 525 VNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNNIVNDIIEYRQ-LTKLKST 583 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ + + R+ + + TGR S QN+P +E Sbjct: 584 YIDGFLPLMDENNRVHSNFK-QMVTSTGRISSTEPNLQNIPIRE---------------- 626 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I +V AD + IE RVLA ++G++ I++F N EDI+ Sbjct: 627 --------EFGRQIRRAFIPRTKDGYIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIH 678 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 + T ++ F P++KV+ E R K + + Y G ++ K + + + Sbjct: 679 LRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINNYFER 738 Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 K + + + S + + Q A+ + G+A + Sbjct: 739 YKGVKEYIEKIVRFAKENGYVITIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAAD 798 Query: 505 LVKKAW 510 ++K A Sbjct: 799 IIKMAM 804 Score = 37.4 bits (85), Expect = 8.9, Method: Composition-based stats. Identities = 33/203 (16%), Positives = 66/203 (32%), Gaps = 23/203 (11%) Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523 + S + + +H + F + + + TA E+ K + + K Sbjct: 644 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTASEVFKVPMEKVTPEMRRAAKA 703 Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR-------DVHIVLPSSRRLVYS 571 + G + + G IS + R+K V + + Sbjct: 704 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVITIM 763 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDI 624 + + Y+ S+ +R+ +L N +Q + DI+ M K + Sbjct: 764 NRR---RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVRVYNDLEKLKLKSKL 820 Query: 625 VLTVHDEIVSETPDTPYFSVGTL 647 +L VHDE+V +T V + Sbjct: 821 ILQVHDELVVDTYKDEVEIVKKI 843 >gi|256827248|ref|YP_003151207.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] gi|256583391|gb|ACU94525.1| DNA polymerase I [Cryptobacterium curtum DSM 15641] Length = 885 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 66/363 (18%), Positives = 123/363 (33%), Gaps = 59/363 (16%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 + L + + G +D D + L AQ + E I +L + + Sbjct: 487 IDLPLVPVLAHMERIGALLDTDTLQALGSRTAQNIADISERIYELAGEKF-NIDSPQQVS 545 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297 LF + G+ + + + L+ + L L + K+ + L + Sbjct: 546 HILFDVIGLPPRKRT--SRGYSTDAKVLEDLSSEHQLPGLILEYRELAKIMGTYIDALPK 603 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 +DGRL + + TGR S QN+P + Sbjct: 604 LRGADGRLHTSFN-ETVTTTGRLSSSNPNLQNIPVRT----------------------- 639 Query: 358 GLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R C I S V AD + IE R+LA ++G+ I AF +G D + T A+ Sbjct: 640 -EFGRHIRECFIPLSPEHLFVSADYSQIELRLLAHLSGDAHLIDAFRSGADFHSATAARV 698 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P+++V+ E R+ K + + Y G ++ + + ++ + Sbjct: 699 FGVPVEEVTPELRSRAKAVNFGIVYGQQAFGLSQSLRIPFGEAQAMIDRYFTAYPVVRAY 758 Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D + +H+ + A+ + GTA +++KKA Sbjct: 759 LDNIVAQAHEKGYALTMFGRKRHIPELRAHNAQQRAFGERIAMNHPMQGTAADIIKKAMV 818 Query: 512 AKH 514 Sbjct: 819 EVD 821 >gi|307295121|ref|ZP_07574963.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] gi|306879595|gb|EFN10813.1| DNA polymerase I [Sphingobium chlorophenolicum L-1] Length = 928 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 91/570 (15%), Positives = 189/570 (33%), Gaps = 103/570 (18%) Query: 12 SPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAH 71 P+ G +AE+ A + + L L D++V+ + Sbjct: 375 CYVPVGHGGKDMFAEKPDQLPLA-----------------LVLAKLKPLLEDDSVLKIGQ 417 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNACLALNFSEHLTKMEE-- 127 N ++ + ++ GI+I G L + + + ++ Sbjct: 418 NLKYDITVLRRH-GIEIAPYDDTIVMSFDLDAGQSLAGHGMDEAAKTHLNHICISFKDVC 476 Query: 128 --GKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGE 184 GK+ I+ + Y A+ ++ W+LF E +++ + Sbjct: 477 GTGKSQISFAEVPLDKATEYAAEDADVTLRLWKLFKTRIAN--EGATRVYEL------VD 528 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 R L + + G ++D + + +L L+ +I L + T L Sbjct: 529 RPLVSVIAKMEHEGIKVDREALSRLSAEFTAGIAALETEIHGLAGQPF-AIGSTQQLGAI 587 Query: 245 LFLITGIDLVDM----SEGTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEA 298 LF G + T +IL + ++A ++ R S + + L Sbjct: 588 LFDKMGYKGGKKGKSGAYSTDVTILEQLKVQGAEIAGKVLDWRQLSKLKST-YTDALQAQ 646 Query: 299 VSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 ++ D R+ + GA +TGR S QN+P + Sbjct: 647 INRDTSRVHTSYSLSGA-QTGRLSSTDPNLQNIPIRT----------------------- 682 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +A G ++ AD + IE R+ A +A +AFANGEDI+ T + F Sbjct: 683 -EVGRQIRHAFVAEPGNVILAADYSQIELRLAAHMADVPALKEAFANGEDIHAATAQQLF 741 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 +V+++ R K + A+ Y G A + A + ++ + S + Sbjct: 742 G----EVNRDTRGRAKTINFAILYGISRWGLAGRLEISADEAQDMISRYYERFPGISLYI 797 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + ++ + A+ + GT+ +++K+A Sbjct: 798 TDTIEKARSKGYTETLFGRKTWFPRIKASVQHERQGAERAAINAPIQGTSADIIKRAMAR 857 Query: 513 KHQGV-------LQLWKDLTEGFACVVQEG 535 + +++ + + + EG Sbjct: 858 MGPALAAEGLHDVKMLLQVHDELVFELPEG 887 >gi|270291866|ref|ZP_06198081.1| DNA polymerase I [Streptococcus sp. M143] gi|270279394|gb|EFA25236.1| DNA polymerase I [Streptococcus sp. M143] Length = 877 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 82/565 (14%), Positives = 181/565 (32%), Gaps = 99/565 (17%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D +L+ + + +L+ ++T + V ++ ++L + + + Sbjct: 337 FAWSCGD---RLYATDKLELLQEPILKEFLEKTPLKV-YDFKKAKVLLNRF---GLNLQA 389 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 S LA+ N +++ + KG + P Sbjct: 390 PAFDSRLAKYLLSTVENNEISTIANLYGQTYLVDD----ETFYGKGVKKAIPER------ 439 Query: 153 VQAWQLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202 + F E+ R V E L ++L L D E+ L + + G ++ Sbjct: 440 ----EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 495 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + +L++Q ++L ++I +L + L + LF G+ L + Sbjct: 496 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + + +LA + + I K+ + L + + +DG++ ++T Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQT 613 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 709 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474 + Y G + + + + + D Sbjct: 710 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 769 Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL----------QL 520 S + ++ A+ + G+A +++K A + ++ Q+ Sbjct: 770 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQTKMLLQV 829 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 ++ + ++ Sbjct: 830 HDEIVLEVPKAELAAVKVLVKQTME 854 >gi|306991581|pdb|2XO7|A Chain A, Crystal Structure Of A Da:o-Allylhydroxylamine-Dc Basepair In Complex With Fragment Dna Polymerase I From Bacillus Stearothermophilus Length = 580 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 86/500 (17%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ E +A++ + +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ S+ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 551 >gi|322375177|ref|ZP_08049691.1| DNA polymerase I [Streptococcus sp. C300] gi|321280677|gb|EFX57716.1| DNA polymerase I [Streptococcus sp. C300] Length = 889 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 85/530 (16%), Positives = 177/530 (33%), Gaps = 91/530 (17%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + +L+ ++T + V ++ ++L + +D+ + Sbjct: 349 FAWSCGD---KLYATDKLELLQEPILKEFLEKTPLKV-YDFKKAKVLLNR---LDLNLQA 401 Query: 93 WICTSVLARTNGLPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 S LA+ A + + +E + KG + P Sbjct: 402 PAFDSRLAKYLLSTVENNEISTIANLYGQTYLADDEI-----FYGKGVKKAIPER----- 451 Query: 152 HVQAWQLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRI 201 + F E+ R V E L ++L L D E+ L + + G ++ Sbjct: 452 -----EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 + +L++Q +KL ++I +L + L + LF G+ L + Sbjct: 507 KKETLLEMQAENELIIEKLTQEIYELAGEKF-NINSPKQLGVLLFEKLGLPLEYTKKTKT 565 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316 + + +LA + + I K+ + L + + DG++ ++ Sbjct: 566 GYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQ 624 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R + Sbjct: 625 TGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSV 660 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K Sbjct: 661 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKA 720 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474 + + Y G + + + + + D Sbjct: 721 VNFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLF 780 Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + G+A +++K A + +++ Sbjct: 781 KRRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 830 >gi|315612199|ref|ZP_07887114.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] gi|315315760|gb|EFU63797.1| DNA-directed DNA polymerase I [Streptococcus sanguinis ATCC 49296] Length = 889 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 73/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%) Query: 157 QLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + F E+ R V E L ++L L D E+ L + + G ++ + + Sbjct: 452 EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKETL 511 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L++Q ++L ++I +L + L + LF G+ L + + Sbjct: 512 LEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 570 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +LA + + I K+ + L + + DG++ ++TGR S Sbjct: 571 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQTGRLS 629 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 630 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 665 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + + Sbjct: 666 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 725 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474 Y G + + + + + D Sbjct: 726 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 785 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 S + ++ A+ + G+A +++K A + +++ + Sbjct: 786 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQ--------TKM 837 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + V VP+ + K V + + +L + + ++ Sbjct: 838 LLQVHDEIVLEVPKSELAAVKALVKQTMEEAIQLSVPLIADENEGATWYEAK 889 >gi|302875558|ref|YP_003844191.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|307690087|ref|ZP_07632533.1| DNA polymerase I [Clostridium cellulovorans 743B] gi|302578415|gb|ADL52427.1| DNA polymerase I [Clostridium cellulovorans 743B] Length = 862 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 79/517 (15%), Positives = 164/517 (31%), Gaps = 93/517 (17%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 E + L+ L + T + HN+ + K +DI ++ + +A Sbjct: 356 FEENEEKSKEYLKKLFENTSEKIIHNAKNLFTVLSK---LDIDINNFVFDTEIAAYLIES 412 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S + L + ++ I +N +Q E K Sbjct: 413 SDKEYTLKTLFETYLHETYQDISQEI-----------------SNLSNLYQRLKEKIK-- 453 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ L + E L + + G+++D + + +L+E E ++I + Sbjct: 454 ---ELQMEDLLYKI---ELPLVKVLADMEKVGFKVDREQLDQLREKFINEITVSQKEIYE 507 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 + + L LF + ++ ++ T +L D I Sbjct: 508 MAGEEF-NISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLKDKHPIIDKITYYRQ 566 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L + DGR+ + + TGR S QN+P + Sbjct: 567 LTKLNSTYVEGLIHVIDQDGRIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY--------- 616 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAF 402 +R + ++ + L+ AD + IE RVLA +A ++ A+ Sbjct: 617 ---------------EMGRAIRKVFVPNDEESLILSADYSQIELRVLAHMADDENMKTAY 661 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLD 458 DI+ T ++ FN P+D+V+KE+R+ K + + Y K Sbjct: 662 LEHIDIHTKTASEVFNLPLDQVTKEKRSAAKAVNFGIVYGISDFALSEDLKISKKEAKQY 721 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQY---------------------PEFAVKDK 497 + + + A++ + A+ Sbjct: 722 IDTYFSRYPKVKEYISSTIAKAEKELYVNTIFNRRRFIPEITSSNKIVKALGDRLAMNAP 781 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A K +LQ+ ++ Sbjct: 782 IQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDEI 818 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 71/202 (35%), Gaps = 17/202 (8%) Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + E+ + A H+ + + L E A +A + G++ ++ Sbjct: 648 LAHMADDENMKTAYLEHIDIHTKTASEVFNLPLDQVTKEKRSAA-KAVNFGIV---YGIS 703 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYLNT 582 + + A++ + + K + + + + +Y + + T Sbjct: 704 DFALSEDLKISKKEAKQYIDTYFSRYPKVKEYISSTIAKAEKELYVNTIFNRRRFIPEIT 763 Query: 583 ATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSE 635 +++++++ G +L N +Q + DI+ M N K ++L VHDEI+ Sbjct: 764 SSNKIVK--ALGDRLAMNAPIQGSAADIIKLAMVNVSKRLKEEKLKSSLILQVHDEIILN 821 Query: 636 TPDTPYFSVGTLCSL-MTKNPS 656 +V L M Sbjct: 822 VYKDELETVKELVKKEMESVID 843 >gi|325479001|gb|EGC82102.1| DNA-directed DNA polymerase [Anaerococcus prevotii ACS-065-V-Col13] Length = 878 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 97/519 (18%), Positives = 195/519 (37%), Gaps = 99/519 (19%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTS--VLARTNGLP 106 +++ + DE ++ + + + +L K LGID I ++ + Sbjct: 351 DEDFVTNMKEIFEDEKILKNSFDIKEDLVLLAK-LGIDGALPYDDIMLMHYLIDPSRSSY 409 Query: 107 SSLKNACLALNFSEHLTKM--EEGKALIAR----FCK-----GSIDSPPYDCTR--ANHV 153 + L++ + + +GK + F K S + YD + + Sbjct: 410 DMKTLSQSYLDYEVNNPEDLLGKGKKALKYEDLDFDKLGNFMASEINAIYDAKDKLVDKL 469 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + +L+K + E +L + + G+ D ++ +L+E I Sbjct: 470 NEYH------------MYDLYK------EIEIELSKVLADMEIVGFVTDRKVLEELKEGI 511 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS---- 266 + +L ++I +L+ + T L LF + ++ ++ T S+L Sbjct: 512 DADIDELTQEIYELSGSEF-NINSTKQLGEVLFKDLELPVIKKTKTGFSTDASVLEKLRD 570 Query: 267 -HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 H I ++ + L +L S+ + L +A+ DGR+R T + A+ TGR S Sbjct: 571 KHQIIPKIERYRELFKLRSTY-----IEGLEKAIDYDGRIRSTFRQNIAA-TGRLSSQDP 624 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QNLP + +R A GK L+ AD + IE Sbjct: 625 NLQNLPIKT------------------------DEGRLIRKAFKAEEGKILIDADYSQIE 660 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 R+LA ++G++ I AF N +DI+ T +K F+TP+++V+K QR+ K + + Y Sbjct: 661 LRILASLSGDEHMIDAFINVDDIHRKTASKVFHTPLEEVTKRQRSEAKAVNFGIIYGISD 720 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G ++ + + + S + D + S Sbjct: 721 YGLSQNLNISRKEAKEYIDNYMASYPSIKEYMDSIVEKAKEDGYVETLFKRRRYVPEINS 780 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ A+ + GTA +++K A ++ + + Sbjct: 781 RNFNVRSFGQRVALNTPIQGTAADIIKIAMIETYKNLKK 819 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 7/64 (10%) Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M K I+L +HDEI+ E Sbjct: 786 RSFGQRVALNTPIQGTAADIIKIAMIETYKNLKKEKIDAKIILQIHDEIILEASKEDEDR 845 Query: 644 VGTL 647 + Sbjct: 846 AIEI 849 >gi|124026294|ref|YP_001015410.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] gi|123961362|gb|ABM76145.1| DNA polymerase I [Prochlorococcus marinus str. NATL1A] Length = 986 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 114/683 (16%), Positives = 207/683 (30%), Gaps = 169/683 (24%) Query: 2 SKLFIDIETRSPQPLPK--VGV-WAYAEQA-VITLCAYAWDDEPVKLWDRTEQSAM-PSD 56 + ID ET S P VG+ + + E I ++ L + + + + + Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHKNKEDDLIEINQINQLKIEE 444 Query: 57 LLQYLRD----ETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLP 106 ++ L+D N+ ++R++ + + +D +IC + L Sbjct: 445 VIFALQDWFSSNENPKTLQNAKYDRLILLRHGIILNGVVMDTLLADYICDATLKH----- 499 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIAR---FCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 SL + E K + ++ + F I S YC Sbjct: 500 -SLDEIA----YREFGFKPKSFSDIVKKGEDFSYVDIKSA----------------SMYC 538 Query: 164 KRDVEATRELF------------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 DV TR+L K + L + E+ L + I G ID + L Sbjct: 539 GMDVYLTRKLAIIYINRLKETSIKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSL 598 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + +++++ + S L LF +D + + + Sbjct: 599 ELTKRLNTIEKEVYNIAGSEFNLS-SPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLE 657 Query: 272 QLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVF 325 +L D + ++ I KL + L + + GR+ + TGR S Sbjct: 658 KLESDHPIVKIIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFN-QAVTATGRLSSSNP 716 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+P + S +R + KL+ AD + IE Sbjct: 717 NLQNIPVRT------------------------EFSRRIRKAFLPQKDWKLLSADYSQIE 752 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+L ++GE+ A+ ED++ T F D + ++R IGK + + Y GA Sbjct: 753 LRILTHLSGEEVLKNAYLKNEDVHSLTAKILFEK--DAIDADERRIGKTINFGVIYGMGA 810 Query: 446 KVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + F L +F + + F +++ A+ + T Sbjct: 811 QRFARSTGVSLIEAKYFLSKFKERYPAVFKFLEYQ-------------ERLALSQGFVET 857 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 R +K + Sbjct: 858 LL------------------------------------------GRRRYFHFNKNGL--- 872 Query: 562 LPSSRRLVYSDVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 R L + D + A +Q +R +Q S DI+ M Sbjct: 873 ---GRLLGTPPNEIDLTTARRAGMEAQQLRAAANAP------IQGSSADIIKLAMIQLHS 923 Query: 620 N------GYDIVLTVHDEIVSET 636 I+L VHDE+V E Sbjct: 924 ALRETGLAAKILLQVHDELVLEV 946 >gi|258645581|ref|ZP_05733050.1| DNA polymerase I [Dialister invisus DSM 15470] gi|260402939|gb|EEW96486.1| DNA polymerase I [Dialister invisus DSM 15470] Length = 858 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 68/405 (16%), Positives = 127/405 (31%), Gaps = 70/405 (17%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G D + + + +KL I + + L Sbjct: 459 IENPLAAVLAEMEKAGIATDQKRWEAVCHELKVQERKLLSLIYEAAGEEF-NVNSPKQLG 517 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSE 297 + LF G+ ++ + + LAK + I KL L Sbjct: 518 VILFEKMGMPAGKKTKNG--YSTAADVLEMLAKSYPFVKDILEYRTISKLISTYLEALPL 575 Query: 298 AVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + GR+ + + TGR S QN+P + Sbjct: 576 LIRPETGRIHTSFN-QTVTATGRLSSSDPNLQNIPVRT---------------------- 612 Query: 357 LGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +RS + G + +D + +E RVLA ++G++ I+AF N EDI+ T A+ Sbjct: 613 --AEGRQIRSLFVPGPGYDCFISSDYSQVELRVLAHMSGDESLIRAFRNKEDIHRRTAAE 670 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 P ++V+ EQR+ K + + Y G A G ++++ + Sbjct: 671 VLGIPFEEVTSEQRSHAKAVNFGIIYGISDFGLANQLGISRGEAGTYIKKYFERYPYIHA 730 Query: 472 FE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 F + S + + A+ + GTA +++K A Sbjct: 731 FMKSMVEDAQESGRAKTLFGRYRELPDIRSSNFNRRSFAERTAMNTPIQGTAADIMKLAM 790 Query: 511 RAKHQGV----------LQLWKDLTEGFACVVQEGGSISARRVAN 545 + + LQ+ +L +E + Sbjct: 791 IEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKTLLKETME 835 Score = 44.0 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M + + GY ++L VHDE+V E ++ TL Sbjct: 778 IQGTAADIMKLAMIEVSRRIKEEGYKSRVLLQVHDELVVEAVSEEKENLKTL 829 >gi|225621485|ref|YP_002722744.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] gi|225216306|gb|ACN85040.1| DNA polymerase I [Brachyspira hyodysenteriae WA1] Length = 920 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 97/597 (16%), Positives = 190/597 (31%), Gaps = 110/597 (18%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-----LLQY 60 ID ET G+ + + I ++A D + ++ + D + Sbjct: 354 IDFET--------TGLDTFKD--TIIGISFAIKSNEAFYLDLSGRTKIDKDKCMNLVFDT 403 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L E + + HN +E + + +G I + + T V A P+ + L Sbjct: 404 LEKEDIKVIGHNLKYEYKMM-RAIGKSIGNM-YFDTMV-AAYLINPTRGRYNMDDL---- 456 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDVEATRELFKRLI 178 IA +I + L EY D + T ++ Sbjct: 457 ----------AIAYLSYNTIKYADLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFA 506 Query: 179 PLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 PL + E L + + G I + + L + + +K E I K Sbjct: 507 PLLKTHNLEDLFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYKEA 566 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + L LF GI ++ T + +L+ + + +L + Sbjct: 567 GEEF-NLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYA 625 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L+ ++ GR+ + + TGR S QN+P Sbjct: 626 KLKNTYLDVFPTLINEKTGRIHASFN-QTVTATGRLSSSEPNLQNIP------------- 671 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 G +R+ I G L+ AD + IE R+LA + + ++AF N Sbjct: 672 -----------VRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPTLVEAFKN 720 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 +DI+ T K ++ + V+ R I K++ ++ Y G +K ++ Sbjct: 721 NDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIK 780 Query: 461 QFSQNVKSTSTFEDWEQAE----------------------SHHLWMQDQYPEFAVKDKL 498 + F + E S + +++ A+ + Sbjct: 781 GYFSTYSRVKPFCEEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLI 840 Query: 499 IGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 G+A +++K A A H+ V+Q+ +L + + + + Sbjct: 841 QGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIME 897 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650 ++Q + D++ M K IV+ VHDE+V E + T+ + Sbjct: 836 LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEI 895 Query: 651 M 651 M Sbjct: 896 M 896 >gi|15674124|ref|NP_268299.1| DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] gi|18202780|sp|Q9CDS1|DPO1_LACLA RecName: Full=DNA polymerase I; Short=POL I gi|12725200|gb|AAK06240.1|AE006442_7 DNA polymerase I [Lactococcus lactis subsp. lactis Il1403] Length = 877 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 84/558 (15%), Positives = 176/558 (31%), Gaps = 99/558 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVIT-----------LCAYAWDDEP----VKLWDRTEQ 50 ID E + + + A+ + A+AW + K D + Sbjct: 310 IDFEIVTDGSISEK---VNADDFFYLETLGENYHREQIVAFAWGNAEKIYVSKNIDLLTK 366 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 P + + ++ R+L +DI ++LA+ + Sbjct: 367 MKFPENTYDFKKN-------------RVLLSH---LDIELPLVKFDAMLAKYLISTTEDN 410 Query: 111 NACLALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 S HL EE F KG+ + P D H+ K + Sbjct: 411 KISTIARLFNSGHLATDEEI------FGKGTKIALPDDAVLFEHLARKIKVLALAKEKMM 464 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 A ++ LSD E L + + G + + + ++ ++ L +I L Sbjct: 465 AELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLA 524 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLAS 284 + L + LF + + ++ + + + ++ + ++ R + Sbjct: 525 GEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQIN 583 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + L ++ DG++ ++TGR S QN+P Sbjct: 584 KVQST-YVKGLIPQIADDGKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------- 628 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S L+ +D + IE RVLA I+G++ I AF + Sbjct: 629 -----------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKH 677 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ +T + F + V+ R K + + Y G A+ + Sbjct: 678 GADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYI 737 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + + + T+ + + + ++ A+ + Sbjct: 738 ETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPI 797 Query: 499 IGTACELVKKAWRAKHQG 516 G+A +++K A + Sbjct: 798 QGSAADILKIAMINLDKA 815 >gi|29726425|pdb|1LV5|A Chain A, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp gi|29726426|pdb|1LV5|B Chain B, Crystal Structure Of The Closed Conformation Of Bacillus Dna Polymerase I Fragment Bound To Dna And Dctp Length = 580 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 10 Base Pairs Of Duplex Dna Following Addition Of A Single Dttp Residue gi|29726377|pdb|1L3U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 11 Base Pairs Of Duplex Dna Following Addition Of A Dttp And A Datp Residue. gi|29726380|pdb|1L3V|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 15 Base Pairs Of Duplex Dna Following Addition Of Dttp, Datp, Dctp, And Dgtp Residues. gi|29726383|pdb|1L5U|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 12 Base Pairs Of Duplex Dna Following Addition Of A Dttp, A Datp, And A Dctp Residue. gi|47168372|pdb|1NJW|A Chain A, Guanine-Thymine Mismatch At The Polymerase Active Site gi|47168375|pdb|1NJX|A Chain A, Thymine-Guanine Mismatch At The Polymerase Active Site gi|47168378|pdb|1NJY|A Chain A, Thymine-Thymine Mismatch At The Polymerase Active Site gi|47168381|pdb|1NJZ|A Chain A, Cytosine-Thymine Mismatch At The Polymerase Active Site gi|47168384|pdb|1NK0|A Chain A, Adenine-Guanine Mismatch At The Polymerase Active Site gi|47168387|pdb|1NK4|A Chain A, Guanine-Guanine Mismatch At The Polymerase Active Site gi|47168390|pdb|1NK5|A Chain A, Adenine-Adenine Mismatch At The Polymerase Active Site gi|47168393|pdb|1NK6|A Chain A, Cytosine-Cytosine Mismatch At The Polymerase Active Site gi|47168396|pdb|1NK7|A Chain A, Guanine-Adenine Mismatch At The Polymerase Active Site gi|47168399|pdb|1NK8|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|47168402|pdb|1NK9|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Two Rounds Of Primer Extension, Following Incorporation Of Dctp And Dgtp. gi|47168405|pdb|1NKB|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Three Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, And Dttp. gi|47168408|pdb|1NKC|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Guanine-Thymine Mismatch After Five Rounds Of Primer Extension, Following Incorporation Of Dctp, Dgtp, Dttp, And Datp. gi|47168411|pdb|1NKE|A Chain A, A Bacillus Dna Polymerase I Product Complex Bound To A Cytosine-Thymine Mismatch After A Single Round Of Primer Extension, Following Incorporation Of Dctp. gi|58177300|pdb|1XC9|A Chain A, Structure Of A High-Fidelity Polymerase Bound To A Benzo[a]pyrene Adduct That Blocks Replication gi|157834270|pdb|1XWL|A Chain A, Bacillus Stearothermophilus (Newly Identified Strain As Yet Unnamed) Dna Polymerase Fragment Length = 580 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|122920392|pdb|2HHQ|A Chain A, O6-Methyl-Guanine:t Pair In The Polymerase-10 Basepair Position gi|122920396|pdb|2HHS|A Chain A, O6-Methyl:c Pair In The Polymerase-10 Basepair Position gi|122920400|pdb|2HHT|A Chain A, C:o6-Methyl-Guanine Pair In The Polymerase-2 Basepair Position gi|122920414|pdb|2HHU|A Chain A, C:o6-Methyl-Guanine In The Polymerase Postinsertion Site (- 1 Basepair Position) gi|122920417|pdb|2HHV|A Chain A, T:o6-Methyl-Guanine In The Polymerase-2 Basepair Position gi|122920428|pdb|2HHX|A Chain A, O6-Methyl-Guanine In The Polymerase Template Preinsertion Site gi|122920472|pdb|2HW3|A Chain A, T:o6-Methyl-Guanine Pair In The Polymerase Postinsertion Site (-1 Basepair Position) Length = 580 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|257438461|ref|ZP_05614216.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] gi|257199040|gb|EEU97324.1| DNA polymerase I [Faecalibacterium prausnitzii A2-165] Length = 859 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 95/521 (18%), Positives = 164/521 (31%), Gaps = 94/521 (18%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 YA D V + +E +L+ L D V +F+ + + W Sbjct: 347 YAVQDTTV--YPLSE-----EELVSLLDDPKVTL----DVFDSAPL---YARAMAAGSWG 392 Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 + V L + L +A + L A A C+ D+ Sbjct: 393 SSIVWD--GKLAAYLLDASASHYLLTTLA--TSYHARSAFSCEEYPDAG----------- 437 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 L + K E T L ++ E L + + G +D + + + Sbjct: 438 --FLADLFAKMKAEITENGEDDLY--NNIEFPLAQVLADMTRTGILVDREGIEAFGVQLR 493 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT 271 QE ++ I + L LF G+ ++ T L Sbjct: 494 QELDQVLTRIEMEAGTSDFNPNSPKQLGTLLFDTMGLPHGKKTKNGWSTDAETLEKLRDI 553 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L +D++ R A + L + + DGR+ A RTGR S QN+P Sbjct: 554 PLVEDILQYR-ACQKLNSTYVEGLLKVIGEDGRIHTRFNQTEA-RTGRLSSDNPNLQNIP 611 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R+ +A G LV AD + IE R+LA Sbjct: 612 IRT------------------------EMGSKLRAYFVAKPGCVLVDADYSQIELRILAH 647 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KV 447 + G+ +AF +G DI+ +T AK +N + V+ R+ K + + Y GA K Sbjct: 648 VTGDAHMQEAFLSGADIHRSTAAKIYNIRPEDVTPRLRSSAKAINFGIMYGKGAYSLSKD 707 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY------------------ 489 LQ + + + + A++ Sbjct: 708 IGVSVKEAEAFLQTYLATFPNIDGYMEKTIADARQCGYVSTLFGRRRALPELNSNNHNIR 767 Query: 490 ---PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 A + GTA +++K A +++W+ L Sbjct: 768 ASGERMARNTPIQGTAADVIKLAM-------VRVWRRLRNE 801 >gi|55670162|pdb|1U45|A Chain A, 8oxoguanine At The Pre-Insertion Site Of The Polymerase Active Site gi|55670165|pdb|1U47|A Chain A, Cytosine-8-Oxoguanine Base Pair At The Polymerase Active Site gi|55670168|pdb|1U48|A Chain A, Extension Of A Cytosine-8-Oxoguanine Base Pair gi|55670171|pdb|1U49|A Chain A, Adenine-8oxoguanine Mismatch At The Polymerase Active Site gi|55670174|pdb|1U4B|A Chain A, Extension Of An Adenine-8oxoguanine Mismatch gi|55670297|pdb|1UA0|A Chain A, Aminofluorene Dna Adduct At The Pre-Insertion Site Of A Dna Polymerase gi|55670300|pdb|1UA1|A Chain A, Structure Of Aminofluorene Adduct Paired Opposite Cytosine At The Polymerase Active Site Length = 580 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|157413679|ref|YP_001484545.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] gi|157388254|gb|ABV50959.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9215] Length = 976 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 88/556 (15%), Positives = 170/556 (30%), Gaps = 100/556 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L ++ D NS F+R +F + K ++LA Sbjct: 437 SKLRNWIEDPKKEKALQNSKFDRQIF---FNHGLILKGVTFDTLLADYLLNNQEKHGLSE 493 Query: 115 A----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 F K GK F S + ++F E ++ + Sbjct: 494 ISFRLFGFKPPSFKETVGKNKDFSFVDIDEASIYCGYDVFLTFKIVKIFKERFSKEKDEL 553 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +LF+ + E L + + G ID+ + KL + + + ++ + +L + Sbjct: 554 IKLFE------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEE 607 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 S L LF +D + + +L + + + + Sbjct: 608 NFNLS-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLS 666 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L ++ GR+ A+ TGR S QN+P + Sbjct: 667 KLLSTYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT---------- 715 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 S +R + KL+ AD + IE R+LA +A E+ I AF Sbjct: 716 --------------EFSRRIRKAFLPEKNCKLLSADYSQIELRILAHLADEEILINAFHK 761 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQ 460 +DI+ T F +++S ++R +GK + + Y G K F L Sbjct: 762 NDDIHSLTARLIFEK--EQISSDERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLI 819 Query: 461 QFSQNVKSTSTFEDWEQ---------------------------------------AESH 481 ++ + F + ++ + Sbjct: 820 KYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSAR 879 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACV 531 M+ Q A + G++ +++K A ++ +LQ+ +L Sbjct: 880 RAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEQD 939 Query: 532 VQEGGSISARRVANVP 547 E + ++ Sbjct: 940 SLEITTKLVKKTMEDC 955 >gi|12001930|gb|AAG43108.1|AF051319_1 DNA polymerase I [Streptomyces griseus] Length = 889 Score = 231 bits (588), Expect = 3e-58, Method: Composition-based stats. Identities = 89/538 (16%), Positives = 172/538 (31%), Gaps = 78/538 (14%) Query: 42 VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 V+L D + + L Q+L +T H + + G I + LA Sbjct: 368 VELGDLSAED--DKALAQWLASDTP-KYFHEAKAAFHMLA---GRGIELAGIAHDTALAA 421 Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 P + LA + HL K +S D A Sbjct: 422 YLLRPGQ-RTYALADVYQRHLQKTLSAATEQLSLLD---NSSLVDQAAA---------IM 468 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 + A + +D E L + + G +D+D++ ++ ++ + + Sbjct: 469 ELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 528 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +L + L+ LF + ++ + Sbjct: 529 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 588 Query: 282 LASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + K L L + V DGR+ T AS TGR S QN+P + + Sbjct: 589 HLLAHRKYQKMKTTLEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEA- 646 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396 +RS I +G +L+ AD + IE RV+A ++ + Sbjct: 647 -----------------------GRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADP 683 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+A+ GED++ ++ F+ P+D+V+ E R K M L Y G ++ A Sbjct: 684 GLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPA 743 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 ++ + + + D A++ + ++ Sbjct: 744 GEAKSIMESYFERFGGVKKYLDEVVAQARKDGYTATLFGRRRYLPELNSDNRLARENAER 803 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545 A+ + GTA +++K A + + ++ + + V G + R + Sbjct: 804 AALNAPIQGTAADIIKVAMIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 861 >gi|302333355|gb|ADL23548.1| DNA-directed DNA polymerase I [Staphylococcus aureus subsp. aureus JKD6159] Length = 876 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 78/514 (15%), Positives = 168/514 (32%), Gaps = 63/514 (12%) Query: 40 EPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVL 99 + + +L+ +L + V +++ + L IDI + + + Sbjct: 341 GEKHIVINADDINNYVELVSWLENPNTKKVVYDAKK-TYVASHRLEIDIQNISF-DIMLA 398 Query: 100 ARTNGLPSSLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + ++ + ++ + + K + ++ + KG P D +V + Sbjct: 399 SYIIDPSRTISDVQSVVSLYGQSFVKDD-----VSIYGKGKKFKVPEDDVLNPYVASITD 453 Query: 159 FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERK 218 + K +++ E + ++ L+D E L + + + G D+ + ++++ I ++ Sbjct: 454 AIYFAKPNMDKQLEEYNQVELLADLELPLAKILSEMEEIGIYTDVHDLEEMEKEIQEKLD 513 Query: 219 KLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAK 275 L +I + L + LF + ++ ++ T +L Sbjct: 514 VLIRNIHDAAGEDF-NINSPKQLGVVLFETLQLPVIKKTKTGYSTAVDVLEQLQGEHPII 572 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 D IL S + L + +S D R+ A +TGR S QN+P Sbjct: 573 DYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLA-QTGRLSSVDPNLQNIP---- 627 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAG 394 +R S ++ AD + IE RVLA I Sbjct: 628 --------------------VRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQ 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ +AF NG+DI+ T K F D+V R K + + Y G ++ Sbjct: 668 DESMKEAFINGDDIHTATAMKVFGVEADQVDSLMRRQAKAVNFGIVYGISDYGLSQSLGI 727 Query: 451 MASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQY 489 + + + + S + ++ Sbjct: 728 TRKKAKAFIDDYLASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFA 787 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 A+ + G+A +++K A Q + + Sbjct: 788 ERTAMNTPIQGSAADIIKLAMVKFAQKMKETTYQ 821 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 16/172 (9%) Query: 493 AVKDKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A K+ G + V R + + G++ +++ A+ + Sbjct: 684 ATAMKVFGVEADQVDSLMRRQAKAVNFGIV---YGISDYGLSQSLGITRKKAKAFIDDYL 740 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAIS 606 K+ + ++ ++ L Y + Y+ TS+ R + + N +Q + Sbjct: 741 ASFPGVKQYMSDIVKDAKALGYVETLLHRRRYIPDITSRNFNLRGFAERTAMNTPIQGSA 800 Query: 607 RDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 DI+ M + ++L VHDE++ E P + S + +M Sbjct: 801 ADIIKLAMVKFAQKMKETTYQAKLLLQVHDELIFEVPKSEVDSFSEFVEEIM 852 >gi|298489723|ref|YP_003719900.1| DNA polymerase I ['Nostoc azollae' 0708] gi|298231641|gb|ADI62777.1| DNA polymerase I ['Nostoc azollae' 0708] Length = 982 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 111/617 (17%), Positives = 206/617 (33%), Gaps = 119/617 (19%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--------S 108 L L + N+ F+R++FK GI++ + ++LA P S Sbjct: 439 LRPILENANYPKTFQNAKFDRLIFK-CQGINLV--GVVFDTMLASYLINPDTTHNLSDLS 495 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L+N L L + K L ID Y C + +QL + + Sbjct: 496 LRNLGLQLTEYNDIVTKTGKKELQKNIADIGIDIVAYYCGTQVYA-TFQLVDKLRCE-LN 553 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 T +L K L+ + E+ L + + G RI+ + +L + + E KL+ ++ Sbjct: 554 KTPDLAKLLV---EVEQPLEAVLAEMEYTGVRINSSYLQELSQQLESELAKLEIQATEIA 610 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-------DLILNR 281 + L LF G+ + + + +L + D I+ Sbjct: 611 SEKF-NLDSPKQLSYILFDKLGLSTKYSRKIQTGYSTDAATLEKLQEVDNTGFVDAIIEY 669 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 SS ++ L V RL A+ TGR S QN+P + Sbjct: 670 RTSSKLKSTYVDALPALVHPQSQRLHTDFN-QTATSTGRLSSSNPNLQNIPIRT------ 722 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 S +R + +G +V AD + IE R+LA ++ E ++ Sbjct: 723 ------------------AFSRQIRKAFLPESGWLMVAADYSQIELRILAHLSQEPVLVQ 764 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ EDI+ T F D+V+ E+R K + + Y G+ A G+D Sbjct: 765 AYKQNEDIHTVTAKLVFEK--DEVTSEERRFAKTINFGVIYGMGS---LKFARSTGVDKA 819 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 ++ ++ + E + Q ++ ++ E + + + G + Sbjct: 820 NANEFIRRFN--ERYPQVFAYLEKVKK----------------EAISQGYVETILGRRRY 861 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY- 579 + ++ + + + D+ Sbjct: 862 FDFTSKSLKEL----------------------------------KGISLEDIDLSRLKN 887 Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEIVSE 635 L + L+R +Q S DI+ M + Y ++L VHDE+V E Sbjct: 888 LGAYNAGLLRSAANAP------IQGSSADIIKIAMVQLHEVLRNYQARLLLQVHDELVFE 941 Query: 636 TPDTPYFSVG-TLCSLM 651 P + + + S+M Sbjct: 942 VPPQEWGELQLQIKSVM 958 >gi|223932667|ref|ZP_03624666.1| DNA polymerase I [Streptococcus suis 89/1591] gi|302024099|ref|ZP_07249310.1| DNA polymerase I [Streptococcus suis 05HAS68] gi|223898637|gb|EEF64999.1| DNA polymerase I [Streptococcus suis 89/1591] Length = 878 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 149/477 (31%), Gaps = 76/477 (15%) Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 + ++F + R V+ E + ++ L D E L + + G ++ Sbjct: 436 DLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKV 495 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 + + + +Q +L ++I +L + L LF G+ L + Sbjct: 496 EAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTILFEEMGLPLEYTKKTKT 554 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316 + + +LA + I KL + L +A+ DG++ ++ Sbjct: 555 GYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYV-QDLTQ 613 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R + S Sbjct: 614 TGRLSSTDPNLQNIP------------------------VRLEQGRLIRKAFVPSLENSV 649 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ + I+AF G DI+ +T + F + V+ R K Sbjct: 650 LLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKA 709 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------- 475 + + Y G + + + + + + Sbjct: 710 VNFGVVYGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIY 769 Query: 476 ------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 S + +++ A+ + G+A +++K A + + + Sbjct: 770 KRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTE--------AG 821 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + V VP + K V + S+ L + + ++ Sbjct: 822 LATRMLLQVHDEIVLEVPVAELETVKAMVKETMESAISLSVPLIADENEGSTWYEAK 878 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N K ++L VHDEIV E P +V + M Sbjct: 798 IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMESA 857 Query: 655 PSWAKGLPLKAE 666 S +PL A+ Sbjct: 858 IS--LSVPLIAD 867 >gi|322390655|ref|ZP_08064169.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] gi|321142628|gb|EFX38092.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 903] Length = 881 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 65/414 (15%), Positives = 135/414 (32%), Gaps = 58/414 (14%) Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + KG+ + P H+ + + + +L L D E+ L + + Sbjct: 432 YGKGAKKAIPEKTALLEHLARKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +++ + +Q ++L ++I +L + L + LF G+ L Sbjct: 492 EIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLGLPLE 550 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 + + + +LA + I K+ + L + + DG++ Sbjct: 551 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRY 610 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P +R + Sbjct: 611 V-QDLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFV 645 Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN + V+ Sbjct: 646 PEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPN 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473 R K + + Y G + ++ + + + Sbjct: 706 DRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDK 765 Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + S + ++ A+ + G+A +++K A Q Sbjct: 766 GYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQA 819 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M + + Y +L VHDEIV + P ++ L M Sbjct: 801 IQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA 860 Query: 655 PSWAKGLPLKAE 666 A +PL+A+ Sbjct: 861 IELA--VPLEAD 870 >gi|254526888|ref|ZP_05138940.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] gi|221538312|gb|EEE40765.1| DNA polymerase I superfamily protein [Prochlorococcus marinus str. MIT 9202] Length = 976 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 89/556 (16%), Positives = 170/556 (30%), Gaps = 100/556 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S L ++ D NS F+R +F + K ++LA Sbjct: 437 SKLRNWIEDPRKEKALQNSKFDRQIF---FNHGLDLKGVTFDTLLADYLLNNQEKHGLSE 493 Query: 115 A----LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 F K GK F S + ++F E ++ + Sbjct: 494 ISFRLFGFKPPSFKETVGKNKDFSFVDIGEASIYCGYDVFLTFKIVKIFKERFSKEKDEL 553 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 +LF+ + E L + + G ID+ + KL + + + ++ + +L + Sbjct: 554 IKLFE------EIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELAEE 607 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 S L LF +D + + +L + + + + Sbjct: 608 NFNLS-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLS 666 Query: 291 KL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L ++ GR+ A+ TGR S QN+P + Sbjct: 667 KLLSTYIDALPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT---------- 715 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 S +R + KL+ AD + IE R+LA +A E+ I AF Sbjct: 716 --------------EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHK 761 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQ 460 +DI+ T F +++S E+R +GK + + Y G K F L Sbjct: 762 NDDIHSLTARLIFEK--EQISSEERRVGKTINFGVIYGMGIKKFARSTGVSTPEAKEFLI 819 Query: 461 QFSQNVKSTSTFEDWEQ---------------------------------------AESH 481 ++ + F + ++ + Sbjct: 820 KYKERYSKIFKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSAR 879 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACV 531 M+ Q A + G++ +++K A ++ +LQ+ +L Sbjct: 880 RAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKFIEMNVPAKMLLQVHDELLFEVEQD 939 Query: 532 VQEGGSISARRVANVP 547 E + ++ Sbjct: 940 SLEITTKLVKKTMEDC 955 >gi|326407724|gb|ADZ64795.1| DNA polymerase I [Lactococcus lactis subsp. lactis CV56] Length = 877 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 84/558 (15%), Positives = 176/558 (31%), Gaps = 99/558 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVIT-----------LCAYAWDDEP----VKLWDRTEQ 50 ID E + + + A+ + A+AW + K D + Sbjct: 310 IDFEIVTDGSISEK---VNADDFFYLETLGENYHREQIVAFAWGNAEKIYVSKNIDLLTK 366 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 P + + ++ R+L +DI ++LA+ + Sbjct: 367 MKFPENTYDFKKN-------------RVLLSH---LDIELPLVKFDAMLAKYLISTTEDN 410 Query: 111 NACLALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 S HL EE F KG+ + P D H+ K + Sbjct: 411 KISTIARLFNSGHLATDEEI------FGKGTKIALPDDAVLFEHLARKIKVLALAKEKMM 464 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 A ++ LSD E L + + G + + + ++ ++ L +I L Sbjct: 465 AELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLA 524 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLAS 284 + L + LF + + ++ + + + ++ + ++ R + Sbjct: 525 GEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQIN 583 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + L ++ DG++ ++TGR S QN+P Sbjct: 584 KVQST-YVKGLIPQIADDGKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------- 628 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S L+ +D + IE RVLA I+G++ I AF + Sbjct: 629 -----------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKH 677 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ +T + F + V+ R K + + Y G A+ + Sbjct: 678 GADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYI 737 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + + + T+ + + + ++ A+ + Sbjct: 738 ETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPI 797 Query: 499 IGTACELVKKAWRAKHQG 516 G+A +++K A + Sbjct: 798 QGSAADILKIAMINLDKA 815 >gi|330832426|ref|YP_004401251.1| DNA polymerase I [Streptococcus suis ST3] gi|329306649|gb|AEB81065.1| DNA polymerase I [Streptococcus suis ST3] Length = 878 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 149/477 (31%), Gaps = 76/477 (15%) Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 + ++F + R V+ E + ++ L D E L + + G ++ Sbjct: 436 DLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKV 495 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 + + + +Q +L ++I +L + L LF G+ L + Sbjct: 496 EAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTILFEEMGLPLEYTKKTKT 554 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316 + + +LA + I KL + L +A+ DG++ ++ Sbjct: 555 GYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYV-QDLTQ 613 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R + S Sbjct: 614 TGRLSSTDPNLQNIP------------------------VRLEQGRLIRKAFVPSLENSV 649 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ + I+AF G DI+ +T + F + V+ R K Sbjct: 650 LLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKA 709 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------- 475 + + Y G + + + + + + Sbjct: 710 VNFGVVYGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIY 769 Query: 476 ------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 S + +++ A+ + G+A +++K A + + + Sbjct: 770 KRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTE--------AG 821 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + V VP + K V + S+ L + + ++ Sbjct: 822 LATRMLLQVHDEIVLEVPVAELETVKAMVKETMESAISLSVPLIADENEGSTWYEAK 878 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N K ++L VHDEIV E P +V + M Sbjct: 798 IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMESA 857 Query: 655 PSWAKGLPLKAE 666 S +PL A+ Sbjct: 858 IS--LSVPLIAD 867 >gi|416913|sp|Q04957|DPO1_BACCA RecName: Full=DNA polymerase I; Short=POL I gi|912445|dbj|BAA02361.1| DNA polymerase [Bacillus caldotenax] Length = 877 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 84/501 (16%), Positives = 174/501 (34%), Gaps = 71/501 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 349 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 406 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W L + Sbjct: 407 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWALERPFL 462 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ E +A++ + +++ Sbjct: 463 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGEELAEQLRTVEQR 517 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT-QLAKDLIL 279 I +L + L + LF + ++ S+ T +L ++ ++++ Sbjct: 518 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKSKTGYSTSADVLEKLAPYHEIVENILQ 576 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L + V D + T+ ++TGR S QN+P + Sbjct: 577 HYRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------ 630 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWK 398 +R + S L+ AD + IE RVLA IA +D Sbjct: 631 ------------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNL 672 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 ++AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 673 MEAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKE 732 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 ++++ ++ + + S + ++ A Sbjct: 733 AAEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMA 792 Query: 494 VKDKLIGTACELVKKAWRAKH 514 + + G+A +++KKA + Sbjct: 793 MNTPIQGSAADIIKKAMIDLN 813 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 686 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 745 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 746 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 805 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 806 KKAMIDLNARLKEERLQARLLLQVHDELILEAPKEE---MERLCRL 848 >gi|291166643|gb|EFE28689.1| DNA polymerase I (POL I) [Filifactor alocis ATCC 35896] Length = 872 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 91/534 (17%), Positives = 176/534 (32%), Gaps = 76/534 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E+ +P L + L E V +N E K I + S LA+ PS Sbjct: 343 EEENIPK-LKELLERENVFIYGNNLKREYTALK---PYGITLPKISFDSQLAQYILNPSE 398 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLF---GEYCKR 165 ++ + + + L KG R + + +CK Sbjct: 399 VEQEPEKIGIKYGMPIVSPN--LEDLLGKGKKRMSFSMANRVQMDEYFAKILAIISHCKT 456 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + + E L + + G ++ D++ +L++ A+ + +++I Sbjct: 457 KMLDMIQEEDTKFLFEKIELPLMKVLGEMEYLGIAVNEDVLCELEQEFAKLIVQYEQEIY 516 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 L + L + LF + ++ ++ + +L + S Sbjct: 517 DLAGEEF-NINSPKQLGVVLFEKLQLPVIKKTKTG--YSTGAEILEKLYDKHPIISKILS 573 Query: 286 GSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEE 338 + KL + L ++ R+ T + TGR S QN+P R E E Sbjct: 574 YRQVSKLQSTYVIGLLSLINPTSKRIHSTFN-QTLTTTGRISSLEPNLQNIPVRTEMGRE 632 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A G LV AD + IE RVLA +A E Sbjct: 633 -------------------------LRKVFVAKEGYVLVDADYSQIELRVLAHMAQEKKM 667 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+ F DI+ T ++ F+ P+++V+KE R+ K + + Y G + Sbjct: 668 IEGFHGSMDIHTKTASEVFSVPVEEVTKELRSAAKAVNFGIVYGISDFGLSNNLNITKKQ 727 Query: 455 CGLDLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFA 493 + + T+ D + +S + +++ A Sbjct: 728 AKEYIDLYFARYPGIKTYMDTIVKEVEELGYSTTLCGRRRYIPEIKSSNFIVKNMGKRLA 787 Query: 494 VKDKLIGTACELVKKA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + + G+A +++K A W + +L + + V+E + R Sbjct: 788 MNTPIQGSAADIIKIAMNRVFEWLKTEKIDAELVLQVHDELLLEVREDDAKYVR 841 >gi|281492801|ref|YP_003354781.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] gi|281376453|gb|ADA65939.1| DNA polymerase I [Lactococcus lactis subsp. lactis KF147] Length = 877 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 84/558 (15%), Positives = 176/558 (31%), Gaps = 99/558 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVIT-----------LCAYAWDDEP----VKLWDRTEQ 50 ID E + + + A+ + A+AW + K D + Sbjct: 310 IDFEIVNDGSISEK---VNADDFFYLETLGENYHREQIVAFAWGNAEKIYVSKNIDLLTK 366 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 P + + ++ R+L +DI ++LA+ + Sbjct: 367 MKFPENTYDFKKN-------------RVLLSH---LDIELPLVKFDAMLAKYLISTTEDN 410 Query: 111 NACLALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 S HL EE F KG+ + P D H+ K + Sbjct: 411 KISTIARLFNSGHLATDEEI------FGKGTKIALPDDAVLFEHLARKIKVLALAKEKMM 464 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 A ++ LSD E L + + G + + + ++ ++ L +I L Sbjct: 465 AELLENEQEHLLSDMELPLAEVLAKMEITGIAVSQNTLEEIGAENEEKLASLTREIYDLA 524 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLAS 284 + L + LF + + ++ + + + ++ + ++ R + Sbjct: 525 GEEF-NINSPKQLGVILFEKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQIN 583 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + L ++ DG++ ++TGR S QN+P Sbjct: 584 KVQST-YVKGLIPQIADDGKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------- 628 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S L+ +D + IE RVLA I+G++ I AF + Sbjct: 629 -----------VRLEEGRKIRKAFVPSKDSLLLSSDYSQIELRVLAHISGDEHLIDAFKH 677 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ +T + F + V+ R K + + Y G A+ + Sbjct: 678 GADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYI 737 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + + + T+ + + + ++ A+ + Sbjct: 738 ETYFERYPGIKTYMENIVREARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPI 797 Query: 499 IGTACELVKKAWRAKHQG 516 G+A +++K A + Sbjct: 798 QGSAADILKIAMINLDKA 815 >gi|116073128|ref|ZP_01470390.1| DNA polymerase I [Synechococcus sp. RS9916] gi|116068433|gb|EAU74185.1| DNA polymerase I [Synechococcus sp. RS9916] Length = 1007 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 102/620 (16%), Positives = 192/620 (30%), Gaps = 141/620 (22%) Query: 61 LRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L N+ ++R++ + + +D ++ + L + Sbjct: 469 LASSDHPKALQNAKYDRLILLRHGLTLGGVVMDTLLADYLRDAAAKHGLDLMAQRDYGIT 528 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 F++ + K ++GKA + F +D YC DV TR L Sbjct: 529 PTLFTDLVGKAKDGKA--SSFAAVPVDQAA----------------LYCAMDVHLTRRLA 570 Query: 175 -----------KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 ++L L + E L + + G RID+ + +L + ++L+ Sbjct: 571 LDLRQQLTSMGEQLPALLEQVELPLEPVLALMEATGIRIDVPYLQELSAELGATLERLET 630 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + + + L LF G++ + + +L D + L Sbjct: 631 EAQDVVGTSFNLA-SPKQLGELLFDTLGLNRKKSRRTKTGWSTDATVLEKLEGDHPVVPL 689 Query: 283 ASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL L + V + GR+ + TGR S QN+P + Sbjct: 690 LLEHRVLSKLKSTYVEALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIPVRT-- 746 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 S +R + G +L+ AD + IE R+L ++GE+ Sbjct: 747 ----------------------EFSRRIRKAFLPQEGWQLLSADYSQIELRILTHLSGEE 784 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCG 456 +A+ +G+D++ T D+VS ++R +GK + + Y GA+ Sbjct: 785 VLQQAYRDGDDVHALTARLL--LEKDEVSADERRLGKTINFGVIYGMGAQ---------- 832 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 FA + + + ++ ++ Sbjct: 833 ----------------------------------RFARETGVSQVVAKDFLAKYKQRYPK 858 Query: 517 VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLVYSDVK 574 V + + RR + R + R K + I L +RR Sbjct: 859 VFAFLELQERLALSRGYVETILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARR------- 911 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTV 628 +Q +R +Q S DI+ M ++L V Sbjct: 912 ------GGMEAQQLRAAANAP------IQGSSADIIKLAMVQLQTALQQQGLPAQLLLQV 959 Query: 629 HDEIVSETPDTPYFSVGTLC 648 HDE+V E +V L Sbjct: 960 HDELVLEVEPAALDTVRQLV 979 >gi|169829549|ref|YP_001699707.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|83637842|gb|ABC33726.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] gi|168994037|gb|ACA41577.1| DNA polymerase I [Lysinibacillus sphaericus C3-41] Length = 875 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 80/510 (15%), Positives = 163/510 (31%), Gaps = 64/510 (12%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L A D + E +A L ++L D + + +S + K+ GI + Sbjct: 331 LLGMALSDGTKTQYIPFEIAAKSDILRRWLEDSSKIKYMSDSKASKAALKRA-GIQLAGV 389 Query: 92 RWICTSVLARTNGLPS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + VLA P S + + L + KG+ + P A Sbjct: 390 DF--DLVLASYINNPGLSGDDVAT---LARELGYYDVQADETVY-GKGAKRAVPEIDKLA 443 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 HV + +EA + ++ + E L + + G ++ + K+ Sbjct: 444 QHVSRKAYAVWSLQPKLEALLKENEQFDLYKELELPLAAILGEMESEGITVNRATLEKMG 503 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSH 267 + + + L+++I + L + LF G+ ++ ++ T +L Sbjct: 504 QELNDKLVVLEQEIYAEAGETF-NINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEK 562 Query: 268 SNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQ 326 + IL + L + + D ++ Q + TGR S Sbjct: 563 LKSEHAIIEYILLYRQLGKLQSTYIEGLLKEIHEKDSKVHTRFQ-QALTATGRLSSTDPN 621 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385 QN+P + +R + S L AD + IE Sbjct: 622 LQNIPIR------------------------LEEGRKIRQAFVPSKEDWILFSADYSQIE 657 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA ++ + ++AF G D++ T F+ ++V R K + + Y Sbjct: 658 LRVLAHMSEDKNLVEAFREGMDVHTRTAMDVFHVSEEEVDSNMRRAAKAVNFGIVYGISD 717 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G ++ ++++ + + D S Sbjct: 718 YGLSQNLDITRKEAATFIEKYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITS 777 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + ++ A+ + G+A +++KKA Sbjct: 778 SNFNLRSFAERTAMNTPIQGSAADIIKKAM 807 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + + +M Sbjct: 795 IQGSAADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIAMLEKIVPEVMENA 854 Query: 655 PS 656 Sbjct: 855 IE 856 >gi|293364474|ref|ZP_06611200.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] gi|291317320|gb|EFE57747.1| DNA-directed DNA polymerase I [Streptococcus oralis ATCC 35037] Length = 889 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 82/529 (15%), Positives = 178/529 (33%), Gaps = 89/529 (16%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + + + ++T + V ++ ++L + LG+++ + Sbjct: 349 FAWSCGD---KLYATDKLELLQEPIFKEFLEKTSLKV-YDFKKAKVLLNR-LGLNLQAPA 403 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + S LA+ + +++ + KG + P Sbjct: 404 F--DSRLAKYLLSTVENNEISTIASLYSQTYLVDD----ETFYGKGVKKAIPER------ 451 Query: 153 VQAWQLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202 + F E+ R V E L ++L L D E+ L + + G ++ Sbjct: 452 ----EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVK 507 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + +L++Q ++L ++I +L + L + LF G+ L + Sbjct: 508 KETLLEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 566 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + + +LA + + I K+ + L + + DG++ ++T Sbjct: 567 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQT 625 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 626 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 661 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 662 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAV 721 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE------------------ 473 + Y G A + + + + Sbjct: 722 NFGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFK 781 Query: 474 ---DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + S + ++ A+ + G+A +++K A + +++ Sbjct: 782 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 830 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 +Q + DIL M K GY +L VHDEIV E P + +V L M + Sbjct: 809 IQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEA 868 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 869 IQ--LSVPLIAD 878 >gi|306826139|ref|ZP_07459474.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431615|gb|EFM34596.1| DNA-directed DNA polymerase I [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 889 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 85/530 (16%), Positives = 176/530 (33%), Gaps = 91/530 (17%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + +L+ ++T + V ++ ++L + +D+ + Sbjct: 349 FAWSCGD---KLYATDKLDLLQEPILKNFLEKTPLKV-YDFKKAKVLLNR---LDLNLQA 401 Query: 93 WICTSVLARTNGLPSSLKNACL-ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 S LA+ A + + +E + KG + P Sbjct: 402 PAFDSRLAKYLLSTVENNEISTIASLYGQTYMVDDE-----TFYGKGVKKAIPER----- 451 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 + F E+ R V E LI L D E+ L + + G ++ Sbjct: 452 -----EKFLEHLARKVAVLVETEPVLIEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKV 506 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 + +L++Q ++L ++I +L D + L + LF G+ L + Sbjct: 507 KKETLLEMQAENEVVIEQLTQEIYELADEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKT 565 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316 + + +LA + + I K+ + L + + DG++ ++ Sbjct: 566 GYSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVVSLQDWILDDGKIHTRYV-QDLTQ 624 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R + Sbjct: 625 TGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSV 660 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K Sbjct: 661 LLSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKA 720 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE----------------- 473 + + Y G A + + + + Sbjct: 721 VNFGVVYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLF 780 Query: 474 ----DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + S + ++ A+ + G+A +++K A + +++ Sbjct: 781 KRRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 830 Score = 51.3 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 +Q + DIL M K GY +L VHDEIV E P + +V L M + Sbjct: 809 IQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKVLVKQTMEEA 868 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 869 IQ--LSVPLIAD 878 >gi|239905004|ref|YP_002951743.1| DNA polymerase I [Desulfovibrio magneticus RS-1] gi|239794868|dbj|BAH73857.1| DNA polymerase I [Desulfovibrio magneticus RS-1] Length = 888 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 75/357 (21%), Positives = 124/357 (34%), Gaps = 55/357 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +++ E L + + G ID + +A L+ DIV L + R + Sbjct: 487 VAELEMPLVPVLVAMERAGIGIDKTAFAAFADEVAGRLAILETDIVALAGKPF-NPRSSQ 545 Query: 240 ALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L L+ G+ + G T + L D IL L + Sbjct: 546 QLGEILYTDLGLKAHGKTPGGAASTSQDALERLAGAHPLVDRILEFRKLEKLRSTYLAPM 605 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 D R+ TL A+ TGR S QN+P + Sbjct: 606 PALADRDSRIHTTLNNM-ATATGRLSSSNPNLQNIPIR---------------------- 642 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 G +R+C A G +LV AD + IE RVLA ++GE + AFA+G DI+ T A Sbjct: 643 --GEFGRRMRACFTAGPGNRLVAADYSQIELRVLAHLSGESALLDAFAHGADIHARTAAI 700 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471 F+ P + ++ ++R K + L Y G + + ++ + + S Sbjct: 701 LFDKPEEAIAPDERRQAKTINFGLLYGMGPQKLSRDLGIKLDAAKAFIARYFERLPGLSA 760 Query: 472 F-EDWEQAESHHLWMQ--------------------DQYPEFAVKDKLIGTACELVK 507 F E +A ++ Q A+ + G A +++K Sbjct: 761 FYEGIVEAAKRDGFVTTLAGRRRLLPDIGSANSQLSSQARRQAINTVVQGGAADIIK 817 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 18/134 (13%) Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTE 599 ++ ++ KRD + + RR + D+ S +SQ R+ Sbjct: 755 LPGLSAFYEGIVEAAKRDGFVTTLAGRRRLLPDIGSANS---QLSSQARRQA------IN 805 Query: 600 NIVQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSV-GTLCSLMT 652 +VQ + DI+ M A + +VL +HDE++ ETP+ L LMT Sbjct: 806 TVVQGGAADIIKMAMLAAAGDAALAGLGAVLVLQIHDELLLETPEAAAKEAGARLAGLMT 865 Query: 653 KNPSWAKGLPLKAE 666 S A +PL+ + Sbjct: 866 GVISLA--VPLEVD 877 >gi|227833200|ref|YP_002834907.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] gi|227454216|gb|ACP32969.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 880 Score = 231 bits (588), Expect = 4e-58, Method: Composition-based stats. Identities = 69/402 (17%), Positives = 138/402 (34%), Gaps = 63/402 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +D E L + + G +D D++ ++ ++ + + +L + Sbjct: 478 YTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPK 537 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA--SSGSAILK----LN 293 L+ LF D+ + + I QLA L + K L Sbjct: 538 QLQAVLFDT--FDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTLE 595 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + + DGR+ T + TGR S QN+P + + Sbjct: 596 GLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEA----------------- 637 Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +RS + G L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 638 -------GRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNYV 690 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 +K F+ P+D+V+ E R K M L Y G ++ A ++ + + Sbjct: 691 GSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMESYFERFGG 750 Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507 + D ++ + ++ A+ + GTA +++K Sbjct: 751 VKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVARENAERAALNAPIQGTAADIIK 810 Query: 508 KAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545 A + + ++ + + V G + +R+ Sbjct: 811 VAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILE 852 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 7/127 (5%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595 + A+ + KR + V+ +R+ Y+ V G YL S R Sbjct: 734 AREAKEIMESYFERFGGVKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVARENAE 793 Query: 596 KLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + N +Q + DI+ M K ++L VHDE+V E V + Sbjct: 794 RAALNAPIQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILER 853 Query: 651 -MTKNPS 656 M K Sbjct: 854 EMDKAIE 860 >gi|319758476|gb|ADV70418.1| DNA polymerase I [Streptococcus suis JS14] Length = 878 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 71/462 (15%), Positives = 146/462 (31%), Gaps = 76/462 (16%) Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 + ++F + R V+ E + ++ L D E L + + G ++ Sbjct: 436 DLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKV 495 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 + + + +Q +L ++I +L + L + LF G+ L + Sbjct: 496 EAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGIILFEEMGLPLEYTKKTKT 554 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316 + + +LA + I KL + L +A+ DG++ ++ Sbjct: 555 GYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYV-QDLTQ 613 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R + S Sbjct: 614 TGRLSSTDPNLQNIP------------------------VRLEQGRLIRKAFVPSLENSV 649 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKV 434 L+ +D + IE RVLA I+ + I+AF G DI+ +T + F + V+ R K Sbjct: 650 LLASDYSQIELRVLAHISQDKHLIEAFQQGADIHTSTAMRVFGIEKAEDVTPNDRRNAKA 709 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------- 475 + + Y G + + + + + + Sbjct: 710 VNFGVVYGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIY 769 Query: 476 ------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 S + +++ A+ + G+A +++K A + + + Sbjct: 770 KRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTE--------AG 821 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + V VP + K V + S+ L Sbjct: 822 LATRMLLQVHDEIVLEVPVAELETVKAMVKETMESAISLSVP 863 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 7/62 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N K ++L VHDEIV E P +V + M Sbjct: 798 IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMESA 857 Query: 655 PS 656 S Sbjct: 858 IS 859 >gi|324990009|gb|EGC21950.1| DNA-directed DNA polymerase I [Streptococcus sanguinis SK353] Length = 880 Score = 230 bits (587), Expect = 4e-58, Method: Composition-based stats. Identities = 72/505 (14%), Positives = 159/505 (31%), Gaps = 70/505 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + GI++P+ + + LA+ + + + KG Sbjct: 381 VLLSHYGIELPAAAF--DARLAKYLLSTVEDNELATIARLYGQTILPTDDEV----YGKG 434 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + + P H+ + ++ +L L + E+ L + + G Sbjct: 435 AKRALPDQEQLFEHLARKVQVLLETEEPMQEQLRSHDQLDLLLEMEQPLAFVLAKMEIAG 494 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +++ + + +Q + + L ++I L + L LF + L + Sbjct: 495 IKVERETLQGMQAENEKTLESLTQEIYNLAGQEF-NINSPKQLGTILFEDMRLPLEYTKK 553 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + +LA + I KL + L EA+++DG++ Sbjct: 554 TKTGYSTAVDVLERLAPIAPIVSKILEYRQISKLQSTYIIGLQEAIAADGKIHTRYV-QD 612 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN- 372 ++TGR S QN+P +R + Sbjct: 613 LTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWA 648 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAI 431 L+ +D + IE RVLA I+ ++ I AF +GEDI+ T + F + V+ R Sbjct: 649 DSVLLSSDYSQIELRVLAHISQDEHLIAAFQHGEDIHTATAMRVFGIERAEDVTPNDRRN 708 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K + + Y G A ++ + + + + Sbjct: 709 AKAVNFGVVYGISDFGLANNLGISRKAAKDYIETYFERFPGIKNYMETIVREARDKGYVE 768 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QL 520 S + +++ A+ + G+A +++K A + + ++ Sbjct: 769 TIYHRRRSLPDINSRNFNIRNFAERTAINSPIQGSAADILKVAMINLDRALTEKNFKSRM 828 Query: 521 WKDLTEGFACVVQEGGSISARRVAN 545 + + V + R++ Sbjct: 829 LLQVHDEIVLEVPNDELTAVRQLVK 853 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N + ++L VHDEIV E P+ +V L M Sbjct: 800 IQGSAADILKVAMINLDRALTEKNFKSRMLLQVHDEIVLEVPNDELTAVRQLVKETMEAA 859 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 860 IELA--VPLVAD 869 >gi|325831762|ref|ZP_08164951.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] gi|325486431|gb|EGC88881.1| DNA-directed DNA polymerase [Eggerthella sp. HGA1] Length = 875 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 69/426 (16%), Positives = 147/426 (34%), Gaps = 67/426 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D + L + + G +D D + +L E +L I+++ + L Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + G+ + ++ T ++L + L+L + ++ L Sbjct: 535 GHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTYIDALPRM 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DGR+ + TGR S QN+P + Sbjct: 595 RADDGRVHTCFN-ETVTTTGRLSSSEPNLQNIPVRT------------------------ 629 Query: 359 LASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R C + G K + AD + IE R+LA ++ ++ + AF +G D + T ++ F Sbjct: 630 EFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P++ V+ E R+ K + + Y G ++ ++++ + + Sbjct: 690 GLPVEDVTPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYL 749 Query: 474 DWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTACELVKKAWRA 512 D AE+ + A+ + G+A +++K A Sbjct: 750 DRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAMTE 809 Query: 513 KHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + ++ +L + + V EG + + +V + V + +P Sbjct: 810 VQRRIMERGFEAKLLLQVHDELDFSVPEG------EIEELSAIVKDVMEHIVDLRVPLDV 863 Query: 567 RLVYSD 572 + Y+D Sbjct: 864 DVSYAD 869 >gi|17228749|ref|NP_485297.1| DNA polymerase I [Nostoc sp. PCC 7120] gi|17130601|dbj|BAB73211.1| DNA polymerase I [Nostoc sp. PCC 7120] Length = 977 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 112/636 (17%), Positives = 206/636 (32%), Gaps = 140/636 (22%) Query: 48 TEQSAMPSDLLQY-----LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 T+ + D++ L N+ F+R++F L I + +LA Sbjct: 426 TKGENLNQDIVLAALRPILESADYPKTFQNAKFDRLVF---LVQGINLTGVVFDPMLASY 482 Query: 103 NGLPSS------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 P + L L L ++ + +GK IA ++ + +Q + Sbjct: 483 VLNPDTSHNLTDLTQRYLGLTIQNYVDLVPKGKT-IADINISAVANYCC-------LQVY 534 Query: 157 QLFGEYCK--RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 F K ++ T L K L + E+ L + T+ G RI+ + +L + + Sbjct: 535 ATFQLVAKLREELAKTPNLDKLLR---EVEQPLESVLATVEYTGVRINSAYLHELSQQLE 591 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV---------DMSEGTLKSIL 265 + KL E +L + L LF G+ TL+ L Sbjct: 592 IDLAKLQEQATELAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEK-L 649 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCV 324 + T +I R S + ++ L V D R+ A+ TGR S Sbjct: 650 QEVDDTGFVNAIIEYRTLSKLKST-YVDALPALVRPDTQRVHTDFN-QTATSTGRLSSSN 707 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P + S +R + +G + AD + I Sbjct: 708 PNLQNIPIRT------------------------AFSRQIRKAFLPESGWLMAAADYSQI 743 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG 444 E R+LA ++ E ++A+ EDI+ T F + V+ ++R I K + + Y G Sbjct: 744 ELRILAHLSQEPLLVQAYQQNEDIHTVTAKLVFEK--EDVNSDERRIAKTINFGVIYGMG 801 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + G+D ++ +K + E + + ++ ++ Q + ++G Sbjct: 802 S---LKFSRSTGIDKNVANEFIKRFN--ERYAKIFAYLEGVKKQAISLGYVETILG---- 852 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 +R S Sbjct: 853 -------------------------------------------------RRRYFDFTNNS 863 Query: 565 SRRLVYSDVK----GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN 620 R+L S + L + L+R +Q S DI+ M + Sbjct: 864 LRKLKGSKPEDIDLSKLKNLGPYDAGLLRSAANAP------IQGSSADIIKIAMVQIHEV 917 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 ++L VHDE+V E P + + + S+M Sbjct: 918 LKKYQARLLLQVHDELVFEVPPQEWAELQPQIKSVM 953 >gi|291520593|emb|CBK75814.1| DNA polymerase I [Butyrivibrio fibrisolvens 16/4] Length = 901 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 79/422 (18%), Positives = 140/422 (33%), Gaps = 58/422 (13%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY----CKRDVEATRELFKRLIPLSDGER 185 A F K +++ D + V + + Y V A + L + E Sbjct: 447 AQADLFGKTKLNAALEDDSMLEAVTTYACYNAYVAFAAFEKVIAEIKEEGMLDIYENIEM 506 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + +G +D + + + ++ +L++ I + L + L Sbjct: 507 PLVYTLFDMELQGIAMDKEALAEYGSRLSVRINELEQSIYSQAGEEF-NINSPKQLGVIL 565 Query: 246 FLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 F GI+ ++ T +L + T IL + + L+ V D Sbjct: 566 FEKMGIEGGKKTKTGYSTAADVLEELSATNPIICDILEYRQLAKLKSTYADGLAACVDED 625 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+R T + TGR S QN+P + Sbjct: 626 GRIRSTF-MQTVTATGRISSTEPNLQNIPIR------------------------MELGR 660 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + AD + IE RVLA ++G++ I AF G+DI+ +T + FNTP D Sbjct: 661 EIRKVFYPKKDCVFLDADYSQIELRVLAHMSGDENLIDAFKAGQDIHRSTASLVFNTPFD 720 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---- 474 +V+ QR K + + Y G AK + + F + Sbjct: 721 EVTDLQRRRAKAVNFGIVYGISAFGLAKDIGVGRKEAQEYIDNYFVAYPKMHEFLEGLKS 780 Query: 475 -----------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + S + + A+ + GTA +++K A H + Sbjct: 781 HAKEKGYVTTMYGRRRPIPELASSNFMTRQFGERVAMNSPIQGTAADIIKIAMVNVHDRL 840 Query: 518 LQ 519 L+ Sbjct: 841 LK 842 >gi|254432862|ref|ZP_05046565.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] gi|197627315|gb|EDY39874.1| DNA polymerase I superfamily [Cyanobium sp. PCC 7001] Length = 990 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 120/690 (17%), Positives = 210/690 (30%), Gaps = 161/690 (23%) Query: 5 FIDIETRSPQP----LPKVGVWAYAEQAVITLCAY-AWDDEPVKLWDRTEQSAMP----- 54 +D ET + P L +GV A+ E AY +P D ++ P Sbjct: 389 ALDTETTALNPFQAELVGLGV-AWGEGLTEL--AYIPIGHQPPVADDLLSETPTPPRQLP 445 Query: 55 -SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPS 107 ++L L N+ ++R++ + +P + ++LA Sbjct: 446 LDEVLTALAPWLASAEHPKALQNAKYDRLILLRH---GLPLGGVVMDTLLADYLRDANAK 502 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 N T E A F + + YC DV Sbjct: 503 HGLEVLAQRNLGFTPTSYGELVPKGASFAAVPV----------------EAAALYCGMDV 546 Query: 168 EATREL-------FKRLIP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 TR L + L P L E L + + G RID + +L E + Sbjct: 547 HVTRRLSPLLRRQLEELGPSLPALLDGVELPLEPVLAQMEATGIRIDTAYLQELSEELGA 606 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 +L+ + + L LF G+D + + +L Sbjct: 607 TLARLEAEARAAAGVEFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGWSTDANVLEKLED 665 Query: 276 DLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQN 329 D + L + KL + L + GR+ + TGR S QN Sbjct: 666 DHPVVPLVLEHRTLSKLKSTYVDALPSLMEPETGRVHTDFN-QAVTATGRLSSSNPNLQN 724 Query: 330 LPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVL 389 +P + S +R + G L+ AD + IE R+L Sbjct: 725 IPIRT------------------------EFSRRIRKAFLPQEGWSLISADYSQIELRIL 760 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK 449 + GE+ ++A+ NG+D++ T + + V+ ++R +GK + + Y GA+ Sbjct: 761 THLCGEEVLVEAYRNGDDVHALTARLLLDK--EAVTPDERRLGKTINFGVIYGMGAQ--- 815 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 FA + + + + Sbjct: 816 -----------------------------------------RFARETGVSQSQAKDFLSR 834 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR---VANVPRLVMRRHKRDVHIVLPSSR 566 ++ ++ V +L E A +I RR + L K + I L +R Sbjct: 835 YKQRYPKVFAFL-ELQERLALSRGYVETILGRRRPFAFDPSGLGRHLGKDPMEIDLEVAR 893 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------ 620 R +Q +R +Q S DI+ M + + Sbjct: 894 R-------------GGLEAQQLRAAANAP------IQGSSADIIKLAMVHLQQALSQQAL 934 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 ++L VHDE+V E ++ +C L Sbjct: 935 PARLLLQVHDELVLEA---APEALDQVCDL 961 >gi|323141560|ref|ZP_08076445.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] gi|322413972|gb|EFY04806.1| DNA-directed DNA polymerase [Phascolarctobacterium sp. YIT 12067] Length = 878 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 74/412 (17%), Positives = 141/412 (34%), Gaps = 66/412 (16%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G D +L+L+L E + KL+ + Sbjct: 470 QQQLKLYEEFELPLAPVLAQMEFAGITPDKELLLQLNEDMGHRIAKLEALAQEQAGEEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + + L + LF + ++ ++ T +L IL + Sbjct: 529 NLKSPKQLGVILFERLQLPVIKKTKTGYSTDAKVLEALEGKHPLIATILEHRKLAKLQST 588 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L L ++ GR+ Q + TGR S QN+P + Sbjct: 589 YLEGLQPLINPKTGRIHTHFQ-QTVTVTGRLSSTDPNLQNIPART--------------- 632 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 S +R + G L+ D + +E R+LA IA ++ ++AF +G+DI Sbjct: 633 ---------EESRQIRRIFVPGAGYDLLMSCDYSQVELRILACIAQDELLLEAFRHGQDI 683 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T A+ F P+D+V+ + R+ K + + Y G AK + + + Sbjct: 684 HARTAAEVFGVPLDEVTPQMRSRAKAVNFGIVYGISDFGLAKQLDVGRKEAAGYIASYFE 743 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + + AE+ ++ A+ + GTA Sbjct: 744 RYTGVKKYMEDIVAEAREQGYVSTLMGRRRYLPEIRSSNFNLRSFAERTAINTPIQGTAA 803 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 +++KKA A K + +LQ+ +L +E + R Sbjct: 804 DIMKKAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEKEQVAQLVRTAME 855 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 11/73 (15%) Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP 655 +Q + DI+ + M + K I+L VHDE+V E + + L+ Sbjct: 798 IQGTAADIMKKAMIAVQRELDKAQCKSRILLQVHDELVLEVTEDEK---EQVAQLVRTAM 854 Query: 656 SWAKGL--PLKAE 666 A L PL A+ Sbjct: 855 EGAASLDIPLLAD 867 >gi|2231821|gb|AAB62092.1| DNA polymerase I [Geobacillus stearothermophilus] Length = 877 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 84/499 (16%), Positives = 166/499 (33%), Gaps = 76/499 (15%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + S L +L DET ++ + K I + +LA P+ Sbjct: 351 ETALADSQFLAWLADETKKKSMFDAKRAVVALK---WKGIDVRGVAFDLLLAAYLLNPAQ 407 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 A+ + + E ++ A + KG S P + T A H+ W L + Sbjct: 408 DAGDIAAV---AKMKQYEAVRSDEAVYGKGVKRSLPDEQTLAEHLVRKAAAIWALEQPF- 463 Query: 164 KRDVEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 +L L+ E+ L + + G +D + ++ +A++ + ++ Sbjct: 464 ------MDDLRNNEQDQLLTKLEQPLAAILAEMEFTGVNVDTKRLEQMGSELAEQLRAIE 517 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLI 278 + I + + L + LF + ++ ++ T +L + I Sbjct: 518 QRIYEHAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVENI 576 Query: 279 LNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L+ + L + V D G++ ++TGR S QN+P + Sbjct: 577 LHYRQLGKLQSTYIEGLLKVVRPDTGKVHTMFN-QTLTQTGRLSSAEPNLQNIPIR---- 631 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGED 396 +R + S L+ AD + IE RVLA IA +D Sbjct: 632 --------------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIADDD 671 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+AF DI+ T F+ ++V+ R K + + Y G A+ Sbjct: 672 NLIEAFQRDLDIHTKTAMDIFHVSEEEVTANMRRQAKAVNFGIVYGISDYGLAQNLNITR 731 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 ++++ + + + S + ++ Sbjct: 732 KEAAEFIERYFASFPGVRRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAER 791 Query: 492 FAVKDKLIGTACELVKKAW 510 A+ + G+A +++KKA Sbjct: 792 TAMNTPIQGSAADIIKKAM 810 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 10/72 (13%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + L +M + Sbjct: 798 IQGSAADIIKKAMIDLAARLKEEQLQARLLLQVHDELILEAPKEEIERLCELVPEVMEQA 857 Query: 655 PSWAKGLPLKAE 666 S +PLK + Sbjct: 858 VS---SVPLKVD 866 >gi|187736420|ref|YP_001878532.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] gi|187426472|gb|ACD05751.1| DNA polymerase I [Akkermansia muciniphila ATCC BAA-835] Length = 945 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 90/571 (15%), Positives = 176/571 (30%), Gaps = 106/571 (18%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETV 66 D ET PL L ++ EP K W + ++ L + Sbjct: 383 DTETTGLNPLMDN------------LLGVSFCAEPHKAWYMPVSGPADLEAVRPLLEGPA 430 Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS-SLKNACLALNFSEHLTKM 125 + H+ F+ + + I K ++LA P LA N ++ T Sbjct: 431 EKIGHHLKFDLEVLRA---NGIHVKGPFFDTLLAHALIAPGMKHGMDVLAENLLQYSTIK 487 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----------- 174 K ++ G+Y D + T +L Sbjct: 488 ----------LKDIAAPGAKKRELDTSGVPVEVMGKYSAEDADITLQLSAVLKRQVKESG 537 Query: 175 -KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L E L + + G R+ + + K + L E I + + Sbjct: 538 MEKLF--RTVELPLLPVLADMEFSGIRVLPESLEKASVKVGAIIDGLRERIEEAAGHPL- 594 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + L +LF + T + + ++ LA + + +KL Sbjct: 595 NLNSPKQLGDFLFGELELVKKPKKTKTGQFVTDEDTLSALAPQHPIIADILAYRENMKLK 654 Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + + DGR+ + TGR + QN+P + Sbjct: 655 STYLDALPKYICPRDGRIHTQF-HQMLTATGRLASQDPNLQNIPVRT------------- 700 Query: 348 NRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R+ + AS ++ AD + IE R++A ++G+ AF G Sbjct: 701 -----------EQGRLIRTAFVPASEKYTMLSADYSQIELRIMAALSGDPAMCGAFREGR 749 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T A+ + P D+V R K + + Y G ++ ++ + Sbjct: 750 DIHTETAARVYGIPRDQVDAVMRRAAKTVNFGIIYGISAFGLSQRLGCPRGEAATLIENY 809 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 +F + + S + ++ A+ + GT Sbjct: 810 FTQFPVVKSFMEDLVHKAEQAGYAETLLGRRRMIPEINSANKTIKSAAERTAINTPIQGT 869 Query: 502 ACELVKKAWR--------AKHQGVLQLWKDL 524 A +++K A + + +LQ+ +L Sbjct: 870 AADMIKIAMIHVDKLLKGTRSRLILQIHDEL 900 >gi|257064003|ref|YP_003143675.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] gi|256791656|gb|ACV22326.1| DNA polymerase I [Slackia heliotrinireducens DSM 20476] Length = 878 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 70/403 (17%), Positives = 134/403 (33%), Gaps = 65/403 (16%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 + L + G ++D+D + + E L I +L + L Sbjct: 480 IDLPLVSTLTLMERVGAQLDVDALAAMGSATRGEIDSLRAHIHELAGEEF-NVDSPKQLG 538 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 + LF G+ + T + L D +L + + ++ L Sbjct: 539 VILFDKLGLPHGKKTRTGYSTNAATLKKLQSIHPIADEVLRYRELAKMSSTYIDALPRMR 598 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 + DGR+ + TGR S QN+P + Sbjct: 599 ADDGRVHTHFN-QTVTTTGRLSSSDPNLQNIPVRT------------------------D 633 Query: 360 ASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R C + G V AD + IE R+LA ++G++ + AF +G D + T A+ F+ Sbjct: 634 FGRRIRECFVPLHEGDVFVSADYSQIELRLLAHLSGDEHLVDAFCSGADFHAATAARVFD 693 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 P+D+V+ + R+ K + + Y G A+ + ++ + ++ D Sbjct: 694 VPVDEVTPQLRSRAKAVNFGIVYGQQAFGLAQSLDIGFKEAQDMIDRYFEAYPGVRSYLD 753 Query: 475 WEQAESH-------HLWMQDQYPEF--------------AVKDKLIGTACELVKKAWRA- 512 ++ + PE A+ + G+A +++K A Sbjct: 754 KTVEDAKQTGYAVTMFGRKRHIPELKMRNAVQRGFGERTAMNHPMQGSAADIIKLAMNEV 813 Query: 513 ---------KHQGVLQLWKDLTEGFACVVQEGGSISARRVANV 546 + Q +LQ+ +L E S R V + Sbjct: 814 QRRLIEDGFESQLMLQVHDELDLSVPADELERLSDMVREVMST 856 >gi|27262526|gb|AAN87544.1| DNA polymerase I [Heliobacillus mobilis] Length = 932 Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats. Identities = 69/408 (16%), Positives = 140/408 (34%), Gaps = 74/408 (18%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + ++ G +++ ++ + + + +KL +I +L + T Sbjct: 526 DVELPLAPILGSMEWIGIKVNPKVLQDMAGELNSDIQKLQAEIHELAGETF-NINSTQQF 584 Query: 242 RMYLFLITGIDLVDMSE-------GTLKSILS-HSNITQLAKDLILNRLASSGSAILKLN 293 LF G+ ++ ++ L+ + H + ++ + L +L S+ L Sbjct: 585 GKILFEKLGLPVIKRTKTGYSTDVEVLEELSDRHPIVPKVLEFRQLMKLKSTYVEGL--- 641 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L +GR+ + + TGR S QN+P Sbjct: 642 -LPLIDGPEGRIHTSFN-QSVTATGRLSSTEPNLQNIP---------------------- 677 Query: 354 ADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R IA G L+ AD + IE R+LA ++ + AFA +DI+ T Sbjct: 678 --VRLEQGRHIRKAFIAPEPGWTLLAADYSQIELRILAHLSDDPSFKDAFAKNQDIHTRT 735 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ F+ P+ V++E R K + + Y G ++ ++ + + Sbjct: 736 ASEVFDVPMGNVTREMRRRAKAVNFGIVYGISDFGLSRDLGVTRGEAKEYIEGYFRRYHG 795 Query: 469 TSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVK 507 + D AE+ Q+ A+ + GTA +++K Sbjct: 796 VRGYIDRIIAEARQQGFVTTLLGRRRRLPDLFVKNKIRQNFGERTAMNTPIQGTAADIIK 855 Query: 508 KAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 A K + +LQ+ +L + +R+ Sbjct: 856 AAMVKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTVVAPLIKRIME 903 Score = 44.0 bits (102), Expect = 0.075, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 78/229 (34%), Gaps = 36/229 (15%) Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + +A+ + ++ +F+D A + + + + + E+ Sbjct: 696 GWTLLAADYSQIELRILAHLSDDPSFKD---AFAKNQDIHTRTASEVFDVPMGNVTREMR 752 Query: 507 KKAWRAKHQGVLQ------LWKDLTEGFACVVQEGGSISARRVANVPRLVMR-----RHK 555 ++A +A + G++ L +DL +E RR V + R R + Sbjct: 753 RRA-KAVNFGIVYGISDFGLSRDLGVTRGEA-KEYIEGYFRRYHGVRGYIDRIIAEARQQ 810 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM 614 V +L RRL VK + +G + N +Q + DI+ M Sbjct: 811 GFVTTLLGRRRRLPDLFVKNKIR------------QNFGERTAMNTPIQGTAADIIKAAM 858 Query: 615 KNATKN----GYDIVL--TVHDEIVSETPDTPYFSVGT-LCSLMTKNPS 656 K G + VHDE++ E P+ V + +M K Sbjct: 859 VKIPKALKDHGLKTRMLLQVHDELIFEVPEEELTVVAPLIKRIMEKTIE 907 >gi|154687041|ref|YP_001422202.1| DNA polymerase I [Bacillus amyloliquefaciens FZB42] gi|154352892|gb|ABS74971.1| PolA [Bacillus amyloliquefaciens FZB42] Length = 879 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 81/483 (16%), Positives = 168/483 (34%), Gaps = 70/483 (14%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALN 117 DE++ +S ++ + GI++ K ++LA P + + + Sbjct: 365 EDESMKKWVFDSK-RSVVALRWQGIEL--KGTEFDALLAAYIINPGNSYDDVASVAKEYG 421 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + ++K E A + KG+ + P + A+H+ + + E +L Sbjct: 422 LNI-VSKDE------AVYGKGAKRAVPAEKELADHLARKASAVNSLRDKLLHALEENNQL 474 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 D E L L+ + G ++D++ + ++ E + + K+ +E I + + Sbjct: 475 ELYEDLELPLALILGEMESMGVKVDVERLKRMGEELKAKLKEYEEKIHDIAGEPF-NINS 533 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L + LF G+ V ++ T +L IL + Sbjct: 534 PKQLGVILFEKLGLPPVKKTKTGYSTSADVLEKLADKHDIVAHILQYRQIGKLQSTYIEG 593 Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + D ++ ++TGR S QN+P + Sbjct: 594 LLKVTRKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------------------- 632 Query: 354 ADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + S L+ AD + IE RVLA I+ ++ I+AF N DI+ T Sbjct: 633 ----LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKT 688 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 F+ D+V++ R K + + Y G ++ G + ++ ++ Sbjct: 689 AMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPG 748 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + + S + ++ A+ + G+A +++K Sbjct: 749 VKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIK 808 Query: 508 KAW 510 KA Sbjct: 809 KAM 811 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 35/185 (18%), Positives = 69/185 (37%), Gaps = 20/185 (10%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKD--LTEGFACVVQEGGSISARRVANVPRL 549 + + + V +A R + + G++ D L++ +E G+ R + + P Sbjct: 690 MDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPG- 748 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 V + V + Y+ TS+ R++ + N +Q + D Sbjct: 749 VKAYMEESVQEAKQKGYVTTLMQRR---RYIPELTSRNFNLRSFAERTAMNTPIQGSAAD 805 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661 I+ + M + ++L VHDE++ E P + L +M A + Sbjct: 806 IIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIEILEKLVPEVMEHAL--ALDV 863 Query: 662 PLKAE 666 PLKA+ Sbjct: 864 PLKAD 868 >gi|289578024|ref|YP_003476651.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] gi|289527737|gb|ADD02089.1| DNA polymerase I [Thermoanaerobacter italicus Ab9] Length = 872 Score = 230 bits (586), Expect = 6e-58, Method: Composition-based stats. Identities = 89/552 (16%), Positives = 188/552 (34%), Gaps = 89/552 (16%) Query: 8 IETRSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 +E S + + + + + I A+++ + V D + DL Sbjct: 297 VEKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTVY-IDVFQTE----DL 351 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + E H + ++ GI+ SK +I T+V+A S + L Sbjct: 352 KEIFEKEDFEFTTHEIK-DFLVRLSYKGIECKSK-YIDTAVMAYLLNPSESNYDLDRVLK 409 Query: 118 ------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +G+ Y C+R ++ + Sbjct: 410 KYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFDLKEKLMNFIE----EM 465 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++ K L + E L + +++ G+ +D +++ +L + I ++ + I K Sbjct: 466 DMKKLL---LEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGYQ 522 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L +LF + ++ ++ T +L + D+I R + Sbjct: 523 F-NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQ-LTKL 580 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ + + R+ + + TGR S QN+P +E Sbjct: 581 KSTYIDGFLPLMDENNRVHSNFK-QMVTATGRISSTEPNLQNIPIRE------------- 626 Query: 348 NRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I +G +V AD + IE RVLA ++G++ I++F N Sbjct: 627 -----------EFGRQIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNN 674 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 EDI++ T ++ F P++KV+ E R K + + Y G ++ K + Sbjct: 675 EDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINN 734 Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500 + + K + + + S + + Q A+ + G Sbjct: 735 YFERYKGVKEYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQG 794 Query: 501 TACELVKKAWRA 512 +A +++K A Sbjct: 795 SAADIIKMAMVK 806 >gi|291522321|emb|CBK80614.1| DNA polymerase I [Coprococcus catus GD/7] Length = 877 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 66/370 (17%), Positives = 126/370 (34%), Gaps = 55/370 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + G ++ D + + + +L+++I +L + L Sbjct: 478 EIEMPLVYALYDMEKAGIAVEKDALAEYGSRLTGRIDELEKNIYELAGESF-NINSPKQL 536 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF G+ ++ T IL IL + + L+ Sbjct: 537 GIILFEKLGLPFAKKTKTGYSTSADILEKLRTYDPIVGQILEYRQLTKLKSTYADGLAGY 596 Query: 299 VSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + D R+ G + TGR S QN+P Sbjct: 597 IRPDDQRIHGKFN-QTITATGRISSTEPNLQNIP------------------------VR 631 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + V AD + IE RVLA +AG++ I+A+ +DI+ T ++ F Sbjct: 632 MELGRLIRKVFVPKEDCIFVNADYSQIELRVLAHMAGDEHLIQAYKEAQDIHRMTASQVF 691 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 +TP D+V+ QR+ K + + Y G ++ +QQ+ + F Sbjct: 692 HTPFDEVTPAQRSNAKAVNFGIVYGISSFGLSQDLSITKKEAENYIQQYFRTYPGIKAFL 751 Query: 474 DWEQAESHH--------------------LWMQDQY-PEFAVKDKLIGTACELVKKAWRA 512 D ++ +MQ + A+ + GTA +++K A Sbjct: 752 DRSVEDAKEKGYAVTLFGRRRPVPELLSSNFMQRSFGERIAMNSPIQGTAADIIKIAMVR 811 Query: 513 KHQGVLQLWK 522 ++ + + Sbjct: 812 VNRRLKRQHM 821 Score = 40.5 bits (93), Expect = 0.97, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R++G ++ N +Q + DI+ M + ++L +HDE++ E Sbjct: 784 QRSFGERIAMNSPIQGTAADIIKIAMVRVNRRLKRQHMKSRLILQIHDELLIEAVLDEVD 843 Query: 643 SVGTL 647 +V + Sbjct: 844 AVKAI 848 >gi|227501799|ref|ZP_03931848.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] gi|227077824|gb|EEI15787.1| DNA-directed DNA polymerase [Corynebacterium accolens ATCC 49725] Length = 882 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 65/419 (15%), Positives = 139/419 (33%), Gaps = 59/419 (14%) Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + A + +D E L + + G +D+D++ ++ ++ + Sbjct: 461 MELAEKLTAELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQ 520 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + +L + L+ LF + ++ + + Sbjct: 521 ERSARELAGDEKLNLNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFL 580 Query: 281 RLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + K L L + V DGR+ T + TGR S QN+P + + Sbjct: 581 DHLLAHREYQKMKTTLEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEA 639 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGE 395 +RS I G ++L+ AD + IE RV+A ++ + Sbjct: 640 ------------------------GRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSAD 675 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+A+ GED++ ++ F+ P+D+V+ E R K M L Y G ++ Sbjct: 676 PGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIP 735 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 A ++ + + + D ++ + ++ Sbjct: 736 AGEAKSIMESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLARENAE 795 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGSISARRVAN 545 A+ + GTA +++K A + + ++ + + V G + R + Sbjct: 796 RAALNAPIQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQVREILE 854 >gi|302391132|ref|YP_003826952.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] gi|302203209|gb|ADL11887.1| DNA polymerase I [Acetohalobium arabaticum DSM 5501] Length = 872 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 64/361 (17%), Positives = 119/361 (32%), Gaps = 55/361 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G +D D++ +L + ++ L +L + L Sbjct: 470 DVELPLIPILAQMELNGIAVDQDMIQELSNKLEEKLDSLRSRAYELAGEEF-NLNSPKQL 528 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF G+ ++ ++ T S+L LIL ++ L + Sbjct: 529 GEILFEKLGLPVIKRTKTGYSTSASVLEKLEDKHEIVPLILEYRKYQKLKSTYVDPLPDL 588 Query: 299 VSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 ++ R+ + + TGR S QN+P + Sbjct: 589 INPKTERIHTSFNQL-VTATGRLSSTEPNLQNIPIRT----------------------- 624 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +A K+L+ D + IE RVLA I+ ++ I A+ G+DI+ T A+ F Sbjct: 625 -EEGRRIRKVFVAEERKELLAVDYSQIELRVLAHISQDENLIAAYREGQDIHTKTAAEVF 683 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 +VS +QR K + + Y G AK + Q+ + Sbjct: 684 GLEASEVSYQQRRRAKAINFGIAYGISPWGLAKDINVSKQEAEDYINQYLNRYPKVKEYM 743 Query: 474 DWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRA 512 D + ++ A+ + G+A +++K A Sbjct: 744 DHQIKQAKEEGYVTTILNRRRYLPEINSSNYHRRSFGERMAINTPIQGSAADIMKLAMLE 803 Query: 513 K 513 Sbjct: 804 S 804 >gi|22298882|ref|NP_682129.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] gi|22295063|dbj|BAC08891.1| DNA polymerase I [Thermosynechococcus elongatus BP-1] Length = 945 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 116/633 (18%), Positives = 204/633 (32%), Gaps = 128/633 (20%) Query: 49 EQSAMP-SDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 E +P + L LR + V N+ F+R++ + GI + + T + + Sbjct: 397 EGQNLPLEETLAALRPILEGDRYPKVLQNAKFDRLVL-RFQGIQLRGVVF-DTMLASYVI 454 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 +S L + + + L+ + D T A+ A +YC Sbjct: 455 NPEASHNLKDLCQRYLPLQA--QSYRTLVGK-----------DQTLADLSPATVA--QYC 499 Query: 164 KRDVEATRELFKRL-IPLSDGERDLWL--------LDQTINDRGYRIDLDLVLKLQELIA 214 DV T L ++L L+ R L L + + G RID D + +L + + Sbjct: 500 GLDVHTTYLLKEKLEADLTPRLRQLLLEVELPLEPILAEMEATGIRIDSDYLRQLSQELE 559 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 Q+ L + + L LF G+D + L + + +L Sbjct: 560 QQLAALQQQAWDAVGQPFNLA-SPKQLSELLFGTLGLDTKKTHKTKLGYSTDAATLEKLR 618 Query: 275 KDLILNRLASSGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQ 328 D + L S + KL + L V D GR+ + TGR S Q Sbjct: 619 GDHPVIDLILSHRTLAKLKSTYVDVLPTLVRPDTGRVHTEFN-QAVTATGRLSSSSPNLQ 677 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + S +R I G LV AD + IE R+ Sbjct: 678 NIPIRT------------------------EFSRQIRRAFIPEAGWLLVAADYSQIELRI 713 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 LA ++ E + A+ G D++ T F +S +R +GK++ + Y G + F Sbjct: 714 LAHLSQEPALLAAYQEGADVHRLTAQ--FLLEKTDISSSERRLGKMINFGVIYGMGPQRF 771 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 A G+ + + ++ + + + + M+ + ++G Sbjct: 772 ---AREAGVSVAEAKVFIQ--RFYNRYPRVFDYLRQMERLALSQGYVETILGR------- 819 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 R R++ L Sbjct: 820 ---------------------------------------RRYFAFESRELQ-SLRGKPLD 839 Query: 569 VYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK----NGYDI 624 V +DV ++ L+R +Q S DI+ M + Sbjct: 840 VLADVDPSKLKMSNYERGLLRAAANAP------IQGSSADIIKCAMVKLAPLLPPEKARL 893 Query: 625 VLTVHDEIVSE-TPDTPYFSVGTLCSLMTKNPS 656 +L VHDE+V E TP+ T+ +M+ Sbjct: 894 LLQVHDELVLEMTPEAWEHLQTTIPEVMSTAVP 926 >gi|320529716|ref|ZP_08030795.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] gi|320138077|gb|EFW29980.1| DNA-directed DNA polymerase [Selenomonas artemidis F0399] Length = 893 Score = 230 bits (586), Expect = 7e-58, Method: Composition-based stats. Identities = 63/364 (17%), Positives = 120/364 (32%), Gaps = 58/364 (15%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G ++ + + ++++DI L + L Sbjct: 492 VELPLVPILAAMERTGVAVNRAALGRALAAANARIAEIEQDIYALAGTEF-NISSPKQLG 550 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSGSAILKLNTLSE 297 LF G+ M + + + ++ D +L S L + Sbjct: 551 EVLFDRLGLTSPKMKKTKTGYSTNAEVLEEMRAAHPVVDRVLTYRMWSKIRSTYLEGIGA 610 Query: 298 AVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + D GR+ + + TGR S QN+P + Sbjct: 611 LIRPDTGRVHTSFN-QTVTATGRLSSSDPNLQNIPVRT---------------------- 647 Query: 357 LGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 VR+ G L+ AD + IE R+LA ++G++ I AF G+DI+ T ++ Sbjct: 648 --EEGRAVRALFEPGEGYDALLSADYSQIELRILAHMSGDETLIDAFLQGQDIHARTASE 705 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F P+ +V+ QR K + + Y G ++ ++++ + Sbjct: 706 VFGVPLAEVTSAQRRSAKAVNFGIVYGLSDYGLSQDLGIPRKEAAGYIERYFERYHGVRA 765 Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 F D A++H + + A+ + GTA +L+K A Sbjct: 766 FLDRVVADAHTNGFVTTLYGRRRALPAINSRNFMQRSNAERMAMNTPIQGTAADLIKIAM 825 Query: 511 RAKH 514 Sbjct: 826 IRAD 829 Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R+ ++ N +Q + D++ M A I+L VHDE+V E + Sbjct: 800 QRSNAERMAMNTPIQGTAADLIKIAMIRADAALRAAGVKSRILLQVHDELVLEVVNDE-- 857 Query: 643 SVGTLCSLMTKNPSWAKGL--PLKAE 666 + + L+T S A L PL + Sbjct: 858 -IAQVTELLTAAMSGAAQLAVPLAVD 882 >gi|219815950|gb|ACL37074.1| DNA polymerase I [uncultured bacterium] Length = 803 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 71/414 (17%), Positives = 144/414 (34%), Gaps = 68/414 (16%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E+ L + Q IN G +D + L + E L+ I + + Sbjct: 393 IEQPLMEVLQHINATGITLDTAYLAGLSVTMHTELTALEGKIYTHAGREF-NINSPKQMG 451 Query: 243 MYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 LF G+ + + + S + ++ +D + + KL + L Sbjct: 452 EVLFDEMGLKPKNQKKTAGGQRSTKESELEKMREDHPIITEILRYRELQKLVSTYIDNLP 511 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 VS+DGRLR T GA+ TGR + QN+P + Sbjct: 512 PLVSADGRLRTTFVQTGAA-TGRMASQNPNLQNIPIRT---------------------- 548 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 S +R +AS G +V D + IE R+ A ++ ++ ++ FA GED++ + Sbjct: 549 --EESKAIRQAFVASPGYSIVSIDYSQIELRIAAILSRDEKMVEIFARGEDVHTGVAVRV 606 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFK------TMASHCGLDLQQFS------- 463 F ++V++E R KV+ + Y G + T + Sbjct: 607 FGVTPEEVTREMRRKAKVINFGILYGMGVNALRGNLGEGTSREEAQEFFNAYFNTFTRLA 666 Query: 464 QNVKSTSTF--------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + ++ T F + +S +++ Q A+ + GTA + ++ A Sbjct: 667 EYLEETKAFARKNGYTETLFGRRRHFPGMQSTAPFIRAQAERMAINAPVQGTAADAMRVA 726 Query: 510 WRAKHQGV--------LQLWKDLTEGFACVVQEGG-SISARRVANVPRLVMRRH 554 +Q + + + + + ++ ++ + + V+ + Sbjct: 727 MNLVYQYIQTEKKTDDVHILLQVHDELLFEIKNNVLETEIPKLVELMQGVLEGY 780 >gi|182417808|ref|ZP_02949122.1| DNA polymerase I [Clostridium butyricum 5521] gi|237667599|ref|ZP_04527583.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378271|gb|EDT75803.1| DNA polymerase I [Clostridium butyricum 5521] gi|237655947|gb|EEP53503.1| DNA polymerase I [Clostridium butyricum E4 str. BoNT E BL5262] Length = 956 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 64/384 (16%), Positives = 131/384 (34%), Gaps = 69/384 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + ++ G+ I+ ++ +L+ E ++ ++I +L D + L Sbjct: 557 EVEHPLIFVLSSMESIGFNINQSMLDELKIKFDSEIQRTQKEIYELADEEF-NVSSPKQL 615 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 LF + ++ ++ + + +L + I K+ L Sbjct: 616 GKILFEKLDLPIIKKTKTG--YSTNQEVLEKLLDKHEIIPKIMYYRQITKISSTYVEGLK 673 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ + TGR S QN+P + Sbjct: 674 NVIDEDGRIHSNFN-QTVTTTGRLSSTDPNLQNIPIRH---------------------- 710 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R I G LV D + IE RVLA IAG++ I AF + DI+ T ++ Sbjct: 711 --ELGREIRKVFIPLQEGDTLVSCDYSQIELRVLAHIAGDENMIDAFKHHSDIHTKTASE 768 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471 F P++ V+ R+ K + + Y A + K + + + + + Sbjct: 769 VFKVPVEDVTSLMRSRAKAVNFGIVYGISAFSLSQDLKIPKAEAQEYMNIYFERYPKIKS 828 Query: 472 FEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAW 510 + + +E+ A+ + G+A +++K A Sbjct: 829 YLENIVSEAEEKGYVLTILNRRRFIPEINASNKIVKALGERLAMNAPIQGSAADIIKIAM 888 Query: 511 ----------RAKHQGVLQLWKDL 524 + + + +LQ+ +L Sbjct: 889 INVYNKLKESKMQSKLILQVHDEL 912 Score = 40.9 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 7/62 (11%) Query: 594 GGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT 646 G +L N +Q + DI+ M N +K ++L VHDE++ + + V Sbjct: 867 GERLAMNAPIQGSAADIIKIAMINVYNKLKESKMQSKLILQVHDELILNVKENEFEEVKK 926 Query: 647 LC 648 + Sbjct: 927 IV 928 >gi|91217029|ref|ZP_01253992.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] gi|91184900|gb|EAS71280.1| DNA polymerase I [Psychroflexus torquis ATCC 700755] Length = 942 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 94/567 (16%), Positives = 183/567 (32%), Gaps = 103/567 (18%) Query: 1 MSKLFI--DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M + + D ET S + L A + A++W+ E +L+ Sbjct: 366 MKQNSVCFDTETTSLKTL----------DAELVGIAFSWESHKGFYVAFPEDQNEAQELV 415 Query: 59 QYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-GLPSSLKNAC 113 + LR + V N ++ + + K + ++LA Sbjct: 416 EKLRPFFESTEIEKVGQNLKYDIKVLANY---KLKVKGPLFDTMLAHYIINPDMRHNMNI 472 Query: 114 LA---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 LA LN+S + GK KG + + +Y D + T Sbjct: 473 LAETYLNYSPQPIEDLIGK-------KGKRQKTMRTVSLEDQT-------QYAVEDADIT 518 Query: 171 RELFKRLI---------PL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L PL D E L + + G +D + + E + ++ ++L Sbjct: 519 FQLKTYFEKELKEASNEPLFKDMEIPLLRVLAAMEIEGINLDKSALENISEKLDEDIERL 578 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + +G + L LF I + + ++ AKD + Sbjct: 579 EKSVYVEAEGEF-NIGSPKQLGEILFGKLEIAKKPKKTKSGQYSTGEEVLSNYAKDHKIV 637 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 R + KL + L + + + T + TGR S QN+P + Sbjct: 638 REVLEWRQLSKLKSTYVDALPKQIHPRTKRVHTEFMQTVAATGRLSSNNPNLQNIPIRTE 697 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 VR + L+ AD + IE R++A ++ Sbjct: 698 R------------------------GREVRKAFVPRDENYVLLAADYSQIELRIIAALSQ 733 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 E + AF NGEDI+ +T A+ F I++V++ QR+ K + + Y G + Sbjct: 734 EKTMMNAFKNGEDIHASTAARVFGVDIEEVTRAQRSNAKTVNFGIIYGVSAFGLSNQTDL 793 Query: 451 MASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQY 489 + ++ + + + D + + + ++ Sbjct: 794 TRNESKELIETYYKTYPKLRDYMDEQVEFAKEHGYVKTVMGRRRYLKDINAKNHIVRSAA 853 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQG 516 AV + G+A +++K A + Sbjct: 854 ERNAVNAPIQGSAADIIKVAMINIYDA 880 >gi|266618521|pdb|3EYZ|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna (Open Form) Length = 580 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|297544296|ref|YP_003676598.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842071|gb|ADH60587.1| DNA polymerase I [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 872 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 89/552 (16%), Positives = 188/552 (34%), Gaps = 89/552 (16%) Query: 8 IETRSPQPLPK----------VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL 57 +E S + + + + + I A+++ + V D + DL Sbjct: 297 VEKWSKVDIKELVTLLQDNRNIAFYPLIYEGEIKKIAFSFGKDTVY-IDVFQTE----DL 351 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + E H + ++ GI+ SK +I T+V+A S + L Sbjct: 352 KEIFEKEDFEFTTHEIK-DFLVRLSYKGIECKSK-YIDTAVMAYLLNPSESNYDLDRVLK 409 Query: 118 ------FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 + +G+ Y C+R ++ + Sbjct: 410 KYLKVDVPSYEGIFGKGRDKKKIEEIDENILADYICSRCVYLFDLKEKLMNFIE----EM 465 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++ K L + E L + +++ G+ +D +++ +L + I ++ + I K Sbjct: 466 DMKKLL---LEIEMPLVEVLKSMEVSGFTLDKEVLKELSQKIDDRIGEILDKIYKEAGYQ 522 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNI-TQLAKDLILNRLASSGS 287 + L +LF + ++ ++ T +L + D+I R + Sbjct: 523 F-NVNSPKQLSEFLFEKLNLPVIKKTKTGYSTDSEVLEQLVPYNDIVSDIIEYRQ-LTKL 580 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ + + R+ + + TGR S QN+P +E Sbjct: 581 KSTYIDGFLPLMDENNRVHSNFK-QMVTATGRISSTEPNLQNIPIRE------------- 626 Query: 348 NRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R I +G +V AD + IE RVLA ++G++ I++F N Sbjct: 627 -----------EFGRQIRRAFIPRSRDGY-IVSADYSQIELRVLAHVSGDEKLIESFMNN 674 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 EDI++ T ++ F P++KV+ E R K + + Y G ++ K + Sbjct: 675 EDIHLRTASEVFKVPMEKVTPEMRRAAKAVNFGIIYGISDYGLSRDLKISRKEAKEYINN 734 Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500 + + K + + + S + + Q A+ + G Sbjct: 735 YFERYKGVKDYIEKIVRFAKENGYVTTIMNRRRYIPEINSRNFTQRSQAERLAMNAPIQG 794 Query: 501 TACELVKKAWRA 512 +A +++K A Sbjct: 795 SAADIIKMAMVK 806 >gi|281417605|ref|ZP_06248625.1| DNA polymerase I [Clostridium thermocellum JW20] gi|281409007|gb|EFB39265.1| DNA polymerase I [Clostridium thermocellum JW20] Length = 894 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 92/542 (16%), Positives = 173/542 (31%), Gaps = 82/542 (15%) Query: 32 LCAYAWDDEPVKLW--DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGI 86 L A A + W D T Q+ L D + H+ I++ GI Sbjct: 342 LAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLK-NFIVYLNNRGI 400 Query: 87 DIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 D + T + A + A LN S + GK K Sbjct: 401 DFNGLAF-DTMIGAYIINPSKETYTISELAQEYLNLSVKAVEKLAGKGKSFTLFKDMQPD 459 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 V + R +++ + + D E L + G++++ Sbjct: 460 VLSK-----TVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYYGFKVN 514 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +D +++ + + ++ + ++I L + L + LF G+ ++ ++ Sbjct: 515 VDALVEFSKELQEKIDVVTKEIYTLAGEEF-NINSPKQLGVILFEKLGLPIIKKTKTGYS 573 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 T +L + + IL L ++ G++ + + TG Sbjct: 574 TDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFN-QTVTATG 632 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P S +R I S L+ Sbjct: 633 RISSTEPNLQNIP------------------------IKLEMSRKIRKVFIPSDENYLLL 668 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA I ++ I AF N EDI+ +T A F P ++V+ R+ K + Sbjct: 669 DADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNF 728 Query: 438 ALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 + Y G AK K + + + + Sbjct: 729 GIVYGIGDFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRR 788 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK 522 + +S + ++ A+ + G+A +++K A H + +LQ+ Sbjct: 789 RYLPELKSRNFNIRSFGERVAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHD 848 Query: 523 DL 524 +L Sbjct: 849 EL 850 >gi|303260832|ref|ZP_07346781.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] gi|302637669|gb|EFL68155.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS292] Length = 887 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 73/461 (15%), Positives = 150/461 (32%), Gaps = 75/461 (16%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYS---DVKGDCSYLNTATSQ 586 + K+ V + + +L D ++ + + Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAKSKK 880 >gi|125973403|ref|YP_001037313.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|256004380|ref|ZP_05429361.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|125713628|gb|ABN52120.1| DNA polymerase I [Clostridium thermocellum ATCC 27405] gi|255991664|gb|EEU01765.1| DNA polymerase I [Clostridium thermocellum DSM 2360] gi|316940363|gb|ADU74397.1| DNA polymerase I [Clostridium thermocellum DSM 1313] Length = 894 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 91/542 (16%), Positives = 172/542 (31%), Gaps = 82/542 (15%) Query: 32 LCAYAWDDEPVKLW--DRTEQSAMPSDLLQY---LRDETVMCVAHNSLFERILFKKTLGI 86 L A A + W D T Q+ L D + H+ I++ GI Sbjct: 342 LAAIAISPVEDEAWYLDFTNNIDEDEFFRQFKDVLEDGNIKKYGHDLK-NFIVYLNNRGI 400 Query: 87 DIPSKRWICTSVLARTNGLPSSL----KNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 D + T + A + A LN S + GK K Sbjct: 401 DFNGLAF-DTMIGAYIINPSKETYTISELAQEYLNLSVKAVEELAGKGKSFTLFKDMQPD 459 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 V + R +++ + + D E L + G++++ Sbjct: 460 VLSK-----TVGVYPHVISKVSRKIDSLLKENNQERLYYDIELPLVRTLADMEYYGFKVN 514 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +D +++ + + ++ + ++I L + L + LF G+ ++ ++ Sbjct: 515 VDALVEFSKELQEKIDVVTKEIYTLAGEEF-NINSPKQLGVILFEKLGLPIIKKTKTGYS 573 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 T +L + + IL L ++ G++ + + TG Sbjct: 574 TDAEVLEELSDRHEIVEKILEYRQLVKLKSTYAEGLLAVINPYTGKIHSSFN-QTVTATG 632 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +R I S L+ Sbjct: 633 RISSTEPNLQNIP------------------------IKLEMGRKIRKVFIPSDENYLLL 668 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA I ++ I AF N EDI+ +T A F P ++V+ R+ K + Sbjct: 669 DADYSQIELRVLAHITNDENMINAFLNNEDIHTSTAASVFGIPKEEVTPLMRSRAKAVNF 728 Query: 438 ALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 + Y G AK K + + + + Sbjct: 729 GIVYGIGDFSLAKDLKISRKEARAYIDGYLDRYPNVKKYMHDIVEEGKEKGFVTTMFMRR 788 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK 522 + +S + ++ A+ + G+A +++K A H + +LQ+ Sbjct: 789 RYLPELKSRNFNIRSFGERVAMNTPIQGSAADIIKIAMVKVHGELKKRKLKSRLILQVHD 848 Query: 523 DL 524 +L Sbjct: 849 EL 850 >gi|312865585|ref|ZP_07725810.1| DNA-directed DNA polymerase [Streptococcus downei F0415] gi|311098853|gb|EFQ57072.1| DNA-directed DNA polymerase [Streptococcus downei F0415] Length = 886 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 88/579 (15%), Positives = 179/579 (30%), Gaps = 90/579 (15%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + A++W ++ + ++ L + F+R + LGI++P+ Sbjct: 344 ILAFSWGNKEAIYVSKNLDLLKDRLFVEALSKP--IKT---YDFKRSKVLLSHLGIELPT 398 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + S LA+ + ++ + + KG+ + P Sbjct: 399 ADF--DSRLAKYLLSTVEDNELSTIASLYGQTPLAKDVEV----YGKGAKKAVP------ 446 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLD 204 +Q + VE L ++L L D E L + + G +++ Sbjct: 447 EDQVLFQHLATKLQVLVETEPVLKEKLAEHGQSDLLFDMELPLANVLAKMEITGIKVNRQ 506 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + ++ L ++I + + L LF G+ + Sbjct: 507 TLKDMEVENQVTLDALTQEIYDMAGQEF-NINSPKQLGTILFEEMGLPTSMTKKTKTGYS 565 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGR 319 + + +LA + I KL + L + + DG++ ++TGR Sbjct: 566 TAVDVLERLAPHAPIVAKILEYRQIAKLQSTYVVGLQDFILDDGKIHTRY-LQDLTQTGR 624 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVV 378 S QN+P +R L+ Sbjct: 625 LSSVDPNLQNIP------------------------VRLEQGRLIRKAFTPEWEDSVLLS 660 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMEL 437 +D + IE RVLA I+G++ I AF NGEDI+ T + FN + V+ R K + Sbjct: 661 SDYSQIELRVLAHISGDEHLIAAFKNGEDIHTATAMRVFNIARPEDVTPNDRRNAKAVNF 720 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------ 475 + Y G ++ + + + + + Sbjct: 721 GVVYGISDYGLSQNLGISRKAAKNYIATYFERFPGIKDYMERVVREAKDKGYVETLFKRR 780 Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVV 532 S + +++ A+ + G+A +++K A Q + E + Sbjct: 781 RTLPDINSRNFNIRNFAERTAINSPIQGSAADILKIAMINLDQAL--------EAGSFKT 832 Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + V VP + K+ V + S+ L Sbjct: 833 KMLLQVHDEIVLEVPNAELSAIKKLVKKTMESAIVLAVP 871 Score = 45.9 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 +Q + DIL M N + ++L VHDEIV E P+ ++ L M Sbjct: 806 IQGSAADILKIAMINLDQALEAGSFKTKMLLQVHDEIVLEVPNAELSAIKKLVKKTMESA 865 Query: 655 PSWAKGLPLKAE 666 A +PL A+ Sbjct: 866 IVLA--VPLLAD 875 >gi|317487766|ref|ZP_07946360.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] gi|316913137|gb|EFV34652.1| DNA polymerase I [Eggerthella sp. 1_3_56FAA] Length = 875 Score = 230 bits (585), Expect = 9e-58, Method: Composition-based stats. Identities = 70/426 (16%), Positives = 147/426 (34%), Gaps = 67/426 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D + L + + G +D D + +L E +L I+++ + L Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPKQL 534 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + G+ + ++ T ++L + L+L + ++ L Sbjct: 535 GHILFEVLGLRTLKKNQRGYSTDAAVLKELSNDHEMPALVLRYRELAKIKSTYIDALPRM 594 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DGR+ + TGR S QN+P + Sbjct: 595 RADDGRVHTCFN-ETVTTTGRLSSSEPNLQNIPVRT------------------------ 629 Query: 359 LASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R C + G K + AD + IE R+LA ++ ++ + AF +G D + T ++ F Sbjct: 630 EFGRQIRECFVPLEKGHKFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVF 689 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P++ VS E R+ K + + Y G ++ ++++ + + Sbjct: 690 GLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYL 749 Query: 474 DWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTACELVKKAWRA 512 D AE+ + A+ + G+A +++K A Sbjct: 750 DRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAMTE 809 Query: 513 KHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + ++ +L + + V EG + + +V + V + +P Sbjct: 810 VQRRIMERGFEAKLLLQVHDELDFSVPEG------EIEELSAIVKDVMEHIVDLRVPLDV 863 Query: 567 RLVYSD 572 + Y+D Sbjct: 864 DVSYAD 869 >gi|328947359|ref|YP_004364696.1| DNA polymerase I [Treponema succinifaciens DSM 2489] gi|328447683|gb|AEB13399.1| DNA polymerase I [Treponema succinifaciens DSM 2489] Length = 929 Score = 230 bits (585), Expect = 1e-57, Method: Composition-based stats. Identities = 76/493 (15%), Positives = 159/493 (32%), Gaps = 71/493 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK-----N 111 L + ++ + V HN F+ + + T + A +S K Sbjct: 405 LEKLFAEKELTLVMHNGKFDLEVLAANGMSAKTECKIFDTMIAAWLLNPAASGKSPYSLE 464 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRAN-HVQAWQLFGEYCKRDVEA 169 + ++ F ++ Y ++ +Q + L + K+ Sbjct: 465 FLAETKLGLKGIEFKDIVQKNQTFADVPLEKAFKYGAEDSDFTLQLYYLLKDEIKK---- 520 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ++L + E + + ++ +G +D + + ++ +A + +++I K Sbjct: 521 --SNLEKLF--YEMEMKVLPILVSMEIQGIHLDKKKLNEYKDELAVLISEKEKEIYKEAG 576 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAKDLILNRLAS 284 + L+ LF + ++ T ++L + +IL+ + Sbjct: 577 CEFNIA-SPKQLQEILFEKRNLPHGKKTKTGYSTDTAVLEELVFSTNDPLPKMILDYRSY 635 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + L +GR+ + G + TGR S QN+P ++ S Sbjct: 636 TKLQSTYVEALPLLADKNGRIHTSFLQTG-TATGRLSSRDPNLQNIPVRDES-------- 686 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +RS A G L+ AD + IE VLA ++G+ AF N Sbjct: 687 ----------------GRRIRSAFTAVPGTVLISADYSQIELVVLAHLSGDKNLCSAFIN 730 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQ 460 G D++ +T A + ++V EQR K + + Y A + + Sbjct: 731 GIDVHKSTAALIYGISPEQVKPEQRRFAKTVNFGVMYGMSAFRLANELNISRTEAKNFID 790 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLI 499 Q+ F D + + + A+ + Sbjct: 791 QYFSTYSDVKKFLDETKRMARENGYVETITGRRRYIPEIKSSSKIVLQGAERIAINTPIQ 850 Query: 500 GTACELVKKAWRA 512 G+A ++VK A Sbjct: 851 GSAADIVKTAMIK 863 >gi|188589036|ref|YP_001921778.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] gi|188499317|gb|ACD52453.1| DNA polymerase I [Clostridium botulinum E3 str. Alaska E43] Length = 871 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 94/546 (17%), Positives = 187/546 (34%), Gaps = 108/546 (19%) Query: 29 VITLCAYAWDDEPVKLWD-----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 + ++ + D + + + L ++ DETV V H+S K Sbjct: 340 EYLILG---EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY 396 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 DI + + + +A + SS N E LI RF + I S Sbjct: 397 ---DIDIQGFDFDTAIAAYL-IDSSKANY--------------EVFDLINRFLEKDIKSD 438 Query: 144 PYD----CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 D C+ +L K D++ EL+ + E L + ++ G+ Sbjct: 439 SNDLKAICSSYLKKLYEKLKEMLHKEDMD---ELYYK------VEHPLIYVLSSMESIGF 489 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +I+ D + +L+ ++ +K +++I +L D + L LF + ++ ++ Sbjct: 490 KINKDKLEELRVKFKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKT 548 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGA 314 + + +L + I K+N+ L + DG + Sbjct: 549 G--YSTNQEVLEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFN-QTV 605 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 + TGR S QN+P + +R I + Sbjct: 606 TTTGRLSSTEPNLQNIPIKY------------------------EMGKEIRKVFIPQDSD 641 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ D + IE RVLA +A + I AF + DI+ T ++ F P+D+V+ R+ K Sbjct: 642 DILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAK 701 Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-------------- 475 + + Y A+ K + + + + ++ Sbjct: 702 AVNFGIVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTI 761 Query: 476 -------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQG---VL 518 + +S + ++ A+ + G+A +++K A R K+ +L Sbjct: 762 LNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELIL 821 Query: 519 QLWKDL 524 Q+ +L Sbjct: 822 QVHDEL 827 >gi|331003770|ref|ZP_08327264.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412153|gb|EGG91548.1| hypothetical protein HMPREF0491_02126 [Lachnospiraceae oral taxon 107 str. F0167] Length = 880 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 64/372 (17%), Positives = 133/372 (35%), Gaps = 58/372 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G R+D + + K + ++ KL+E I+ + L Sbjct: 482 NIEMPLIYSLAKMENTGVRVDEERLKKYANTLLEKIDKLEESIISKAGESF-NINSPKQL 540 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296 LF + ++ + + +LA + + R + KLN+ L+ Sbjct: 541 GEILFGKLKLSGGKKTK--TGYSTAADVLEKLALEHEIIRDILEYRQLTKLNSTYATGLA 598 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ GT + TGR S QN+P + Sbjct: 599 GYIREDGRIHGTFN-QTITATGRISSTEPNLQNIPVRT---------------------- 635 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G V AD + IE RVLA ++G++ I+++ + DI+ T ++ Sbjct: 636 --EMGSKIRDIFVPKPGYVFVDADYSQIELRVLASLSGDEKLIESYHSAADIHAATASQV 693 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ P+++V+ E R K + + Y G ++ + + + F Sbjct: 694 FHVPLEEVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYINNYFKIYGGVKKF 753 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D + A++ + + A+ + G+A +++K + Sbjct: 754 LDKQVADAKEKGFVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPIQGSAADIMKISML 813 Query: 512 AKHQGVLQLWKD 523 + + + D Sbjct: 814 KVDEALKESGYD 825 Score = 40.9 bits (94), Expect = 0.64, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYF 642 R++G ++ N +Q + DI+ M + GYD IVL +HDE++ E + Sbjct: 787 TRSFGDRVAMNSPIQGSAADIMKISMLKVDEALKESGYDANIVLQIHDELLIEVKEEEAE 846 Query: 643 SVGTLCS 649 V L Sbjct: 847 KVSKLVE 853 >gi|126651389|ref|ZP_01723596.1| DNA polymerase I [Bacillus sp. B14905] gi|126591918|gb|EAZ86001.1| DNA polymerase I [Bacillus sp. B14905] Length = 875 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 159/496 (32%), Gaps = 67/496 (13%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D +S + L +L D + + +S + K+ GI + + VLA Sbjct: 348 DIAAKSDI---LRCWLEDSSKIKYMSDSKASQAALKRA-GIQLAGVDF--DLVLASYINN 401 Query: 106 PS-SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P S + + L + KG+ + P A HV + Sbjct: 402 PGLSGDDVAT---LARELGYYDVQADETVY-GKGAKRAIPEIDKLAQHVSRKAYAVWSLQ 457 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +EA + ++ D E L + + G ++ + K+ + + ++ L+++I Sbjct: 458 PKLEALLKENEQFDLYKDLELPLAAILGEMESEGITVNRATLEKMGQELNEKLVVLEQEI 517 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + L + LF G+ ++ ++ T +L + IL Sbjct: 518 YAEAGETF-NINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLKSEHAIIEYILLY 576 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + + D ++ Q + TGR S QN+P + Sbjct: 577 RQLGKLQSTYIEGLLKEIHEKDSKVHTRFQ-QALTATGRLSSTDPNLQNIPIR------- 628 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + S L AD + IE RVLA ++ + + Sbjct: 629 -----------------LEEGRKIRQAFVPSNENWILFSADYSQIELRVLAHMSEDKNLV 671 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF G D++ T F+ D+V R K + + Y G ++ Sbjct: 672 EAFREGMDVHTRTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGLSQNLDITRKEA 731 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + ++ + + D S + ++ A+ Sbjct: 732 ATFIDKYFASFPGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNFNLRSFAERTAM 791 Query: 495 KDKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 792 NTPIQGSAADIIKKAM 807 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P + + +M Sbjct: 795 IQGSAADIIKKAMIDMDARLKKENMQAKLLLQVHDELIFEAPKEEIALLEKIVPEVMENA 854 Query: 655 PS 656 Sbjct: 855 IE 856 >gi|38146971|gb|AAR11870.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 65/381 (17%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G+++D + + + + I + KL+ I ++ + L Sbjct: 451 IEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWF-NINSPKQLS 509 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + +V ++ T +L LIL+ + L +A+ Sbjct: 510 YILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILTTYCQGLVQAI 569 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ G + TGR + QN+P + Sbjct: 570 NPATGRIHTNFIQTG-TATGRLASAEPNLQNIPVKY------------------------ 604 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F Sbjct: 605 DEGKLIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFG 664 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 I +V+ R+ K + + Y G ++ K + ++ + + D Sbjct: 665 VDISQVTPIMRSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLD 724 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA- 512 + +S + +++ A+ + G+A +++K A Sbjct: 725 NVVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRV 784 Query: 513 ---------KHQGVLQLWKDL 524 K + +LQ+ +L Sbjct: 785 YKKLKENNLKSRIILQVHDEL 805 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%) Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + ++ + R V V + L + K Y+ S Sbjct: 699 KISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNRK---RYIKDIKSTNKN 755 Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R Y ++ N +Q + DI+ M K I+L VHDE++ E+P Sbjct: 756 LRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815 Query: 643 SVGTLCS 649 V + Sbjct: 816 IVKEIVK 822 >gi|291556803|emb|CBL33920.1| DNA polymerase I [Eubacterium siraeum V10Sc8a] Length = 829 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 79/402 (19%), Positives = 141/402 (35%), Gaps = 68/402 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E L + + G ID D + + + ++ +K+ +I + + Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEF-NIGSPK 487 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-----T 294 L LF + ++ + + L + L + A+ KL Sbjct: 488 QLGSVLFEKLALPSAKKTK--TGYSTNADVLESLMDKHPIVPLITEYRALTKLQNTYVTG 545 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V DGR+ T + +RTGR S QN+P + Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRT-------------------- 584 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R A +G LV AD + IE RVLA I+G++ KAF +G DI+ T + Sbjct: 585 ----PLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470 + FN PI+ V+ + R+ K + + Y GA K ++ + + Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIRSYLSKYSGIA 700 Query: 471 TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509 + + A++ + A + GTA +++K A Sbjct: 701 QYMELTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIA 760 Query: 510 W-----RAKHQG-----VLQLWKDLTEGFACVVQEGGSISAR 541 R K G +LQ+ +L E ++ + Sbjct: 761 MIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAEKVALLLK 802 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 35/228 (15%) Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 S ++Q + A+ +L + Y + ++ + E++KKA+ Sbjct: 571 SSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLD 630 Query: 513 K------------HQGVLQLWKDLTEGFACV------------VQEGGSISARRVANVPR 548 +Q + + DL V + + +S + + R Sbjct: 631 GVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIR 690 Query: 549 LVMRRHKRDVH----IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQ 603 + ++ V + R + G Y+ ++ + +G ++ +N +Q Sbjct: 691 SYLSKYSGIAQYMELTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQ 750 Query: 604 AISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVG 645 + DI+ M +G D ++L VHDE++ E + V Sbjct: 751 GTAADIIKIAMIKVYNRLKDSGLDARLILQVHDELIVEAKEDCAEKVA 798 >gi|160947654|ref|ZP_02094821.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] gi|158446788|gb|EDP23783.1| hypothetical protein PEPMIC_01589 [Parvimonas micra ATCC 33270] Length = 888 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 86/500 (17%), Positives = 172/500 (34%), Gaps = 77/500 (15%) Query: 83 TLGIDIPSKRWICTSVL----ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 L ++ K + +L G LK + LN K GK + Sbjct: 392 ALKNNLEFKNYEDVMILEYLIDSNKGNYDILKVSNEFLNLEILDLKEMLGKGKNKKTFFE 451 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDR 197 + + N +F D+ + LI L + E+ L + + Sbjct: 452 LEEDIIFKFISQN------VFAISALYDIFIEKAKENNLISLYENVEKPLVKVLADMEKT 505 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D + +++L E ++ ++ + +L + + L + LF G+ +V + Sbjct: 506 GVLVDRNKIIELNEEYSKLAYLYEQKVYELAGEVF-NLNSPKQLGVILFEKIGLPVVKKT 564 Query: 258 E---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + T +L + D IL + + L+ + E + DGR+R + + Sbjct: 565 KTGYSTDVEVLEKLSKKHEIVDYILKYRSLNKLISTYLDGILEYIMDDGRVRTSFK-QMI 623 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + +R +A K Sbjct: 624 TATGRLSSVDPNLQNIPIRS------------------------EEGKNIRKVFVADKNK 659 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 + AD + IE RVLA ++ + I +F N DI+ T ++ F PI++V+ QR K Sbjct: 660 VFIDADYSQIELRVLAHLSKDSVMIDSFKNDLDIHYKTASEVFGVPINEVTDNQRRSAKA 719 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------- 474 + + Y G +K + + + S ++ + Sbjct: 720 VNFGIVYGISDYGLSKDLNITRNEARQYIDGYLNTYPSIKSYMEEIVNKAKKDGFVTTIL 779 Query: 475 -----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQ 519 + S + ++ A+ + G+A +++K A ++ +LQ Sbjct: 780 DRKRYIPEINSKNFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQ 839 Query: 520 LWKDLTEGFACVVQEGGSIS 539 + +L C E ++ Sbjct: 840 IHDEL--IVECEESEKETVK 857 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 7/77 (9%) Query: 578 SYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHD 630 Y+ S+ R++G ++ N +Q + DI+ M K ++L +HD Sbjct: 783 RYIPEINSKNFNIRSFGERIALNTPIQGSAADIIKLAMIKVYERLKIEKVNAKLILQIHD 842 Query: 631 EIVSETPDTPYFSVGTL 647 E++ E ++ +V + Sbjct: 843 ELIVECEESEKETVKKI 859 >gi|302381103|ref|ZP_07269563.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] gi|302311150|gb|EFK93171.1| DNA-directed DNA polymerase [Finegoldia magna ACS-171-V-Col3] Length = 875 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 95/546 (17%), Positives = 189/546 (34%), Gaps = 82/546 (15%) Query: 28 AVITLCA--YAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFE-RILFKK 82 L Y D+EPV T++ + DL++ ++E + F+ + Sbjct: 319 FTFALFNDDYYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINKLSFDIKPCIYH 378 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCK 137 + I V+ PS ++ + + + GK + Sbjct: 379 LMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTIL 438 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTIND 196 S + N+V + +F + E E L D E L + + Sbjct: 439 ESDEKEI-----DNYVVKYMMFTNKLYEKISEIEEEDMMHLY--RDVEIPLIKVLCDMEF 491 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G + + ++++ EL E K +++ + +L I + + L LF + ++ Sbjct: 492 TGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKK 550 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 ++ T + +L + D IL + ++ + + + DG++ T Q Sbjct: 551 NKTGPSTDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKEDGKIHTTFQQTI 610 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A +TGR S QN+P + +R + S G Sbjct: 611 A-QTGRISSTNPNLQNIPIRT------------------------EEGRLIRKAFVPSEG 645 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ AD + IE RVLA +A ++ I AF +G DI+ T ++ F DKV+ QR+ K Sbjct: 646 NMLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAK 705 Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------- 474 + + Y G +K ++ + K + + Sbjct: 706 AVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETI 765 Query: 475 ------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518 + +S + ++ A+ + G+A +++K A K + +L Sbjct: 766 MNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLIL 825 Query: 519 QLWKDL 524 Q+ +L Sbjct: 826 QVHDEL 831 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 11/134 (8%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + + + + + V I + + Y+ S+ Sbjct: 726 ITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRR---RYIPELKSKNYNV 782 Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M N K ++L VHDE++ + P Sbjct: 783 RSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREK 842 Query: 644 VGTLCS-LMTKNPS 656 V + +MT Sbjct: 843 VLEIMKDVMTHAVD 856 >gi|312144078|ref|YP_003995524.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] gi|311904729|gb|ADQ15170.1| DNA polymerase I [Halanaerobium sp. 'sapolanicus'] Length = 880 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 94/515 (18%), Positives = 180/515 (34%), Gaps = 88/515 (17%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I YA+ DE V + +TE + + L + L ET+ + N+ E L GI++ Sbjct: 345 EIL---YAFQDESVYSY-KTENNKIADALKEILESETIEKLFINAK-ESSLALLCAGIEV 399 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + +LA PSS + E M+E F + I Sbjct: 400 KNISFE--PLLAYYLLQPSSSLPDLEEIFSRELDIGMQE-------FSQDQI-------- 442 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVL 207 V+ +LF RD+ + L L + E L + + G +ID D + Sbjct: 443 --LAVETIKLFK---LRDILIKKLKDDSLYDLFKNMELPLIKVLAQMEYNGVKIDKDWLQ 497 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 +L + + + + + + +L + L LF G+ ++ ++ + Sbjct: 498 QLSDKLEKRLEIITKKAHELAGEDF-NLNSPKQLGEILFEKLGLPVIKRTKTG--YSTNA 554 Query: 268 SNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 + + +L + L S + KL ++L ++ G++ + + TGR S Sbjct: 555 NVLEKLEGKHPIIPLISEYRELAKLKSTYIDSLPPLINSETGKIHTSFN-QMVTATGRLS 613 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P + +R I S + L+ D Sbjct: 614 STNPNLQNIPIRT------------------------EEGREIRKAFIPSSDNMILLAVD 649 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RV A ++G+ +AF +G DI+ T ++ F ++VS R KV+ L Sbjct: 650 YSQIELRVFAHLSGDKRLKEAFNSGRDIHTETASEIFEVEAEQVSPNLRRHAKVINFGLA 709 Query: 441 YQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------W 475 Y A + + ++ + + D Sbjct: 710 YGMSAYGLSQDLDIPVEEAQDYIDKYFERFSGVKKYMDETIQKVKEKGYAETLYGRKRYI 769 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + + A+ + GTA +++KK+ Sbjct: 770 PEINSSNYHRRSFAERSAINTPVQGTAADIMKKSM 804 >gi|38146969|gb|AAR11869.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 65/381 (17%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G+++D + + + + I + KL+ I ++ + L Sbjct: 451 IEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWF-NINSPKQLS 509 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + +V ++ T +L LIL+ + L +A+ Sbjct: 510 YILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILTTYCQGLVQAI 569 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ G + TGR + QN+P + Sbjct: 570 NPATGRIHTNFIQTG-TATGRLASAEPNLQNIPVKY------------------------ 604 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F Sbjct: 605 DEGKLIRKAFVPDEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFG 664 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 I +V+ R+ K + + Y G ++ K + ++ + + D Sbjct: 665 VDISQVTPIMRSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPRVKEYLD 724 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA- 512 + +S + +++ A+ + G+A +++K A Sbjct: 725 NVVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRV 784 Query: 513 ---------KHQGVLQLWKDL 524 K + +LQ+ +L Sbjct: 785 YKKLKENNLKSRIILQVHDEL 805 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%) Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + ++ + R V V + L + K Y+ S Sbjct: 699 KISRKEAAEFINRYFEKYPRVKEYLDNVVKFARENGFVLTIFNRK---RYIKDIKSTNKN 755 Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R Y ++ N +Q + DI+ M K I+L VHDE++ E+P Sbjct: 756 LRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815 Query: 643 SVGTLCS 649 V + Sbjct: 816 IVKEIVK 822 >gi|229006922|ref|ZP_04164552.1| DNA polymerase I [Bacillus mycoides Rock1-4] gi|228754322|gb|EEM03737.1| DNA polymerase I [Bacillus mycoides Rock1-4] Length = 884 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 81/492 (16%), Positives = 171/492 (34%), Gaps = 74/492 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D+ + ++ + K I + ++A P+ Sbjct: 363 EAFKKWLADDEMRKYTFDAKRAIVALK---WKGIEIQGIYFDLLIAAYLLDPADTDKDFR 419 Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170 A + KM+E A+ + KG+ + P A HV + + + K VE Sbjct: 420 A------VAKMKETHAVKSDEEVYGKGAKRAVPAQDIVAEHVARKVHVLYDVQKTFVE-E 472 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ ++ E L + + +G +D + + + + +A K+++++I +L Sbjct: 473 LQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGT 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ ++ S + +L + + + Sbjct: 533 EF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMEHHEIIPKILHYRQLG 589 Query: 291 KLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KLN+ L + V D ++ ++TGR S QN+P + Sbjct: 590 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 637 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I S G + AD + IE RVLA IA + ++AF Sbjct: 638 -------------LEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQ 684 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 + DI+ T F D+V+ R K + + Y G ++ G + Sbjct: 685 HDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFI 744 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + S + ++ A+ + Sbjct: 745 EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 804 Query: 499 IGTACELVKKAW 510 G+A +++KKA Sbjct: 805 QGSAADIIKKAM 816 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + G ++L VHDE++ E P + L +M Sbjct: 804 IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA 863 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 864 IELA--VPLKVD 873 >gi|251779451|ref|ZP_04822371.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083766|gb|EES49656.1| DNA polymerase I [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 871 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 94/546 (17%), Positives = 187/546 (34%), Gaps = 108/546 (19%) Query: 29 VITLCAYAWDDEPVKLWD-----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 + ++ + D + + + L ++ DETV V H+S K Sbjct: 340 EYLILG---EEGRSHVIDFKLVSMSNREKALNLLRTFMEDETVKKVIHDSKNLITFLNKY 396 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 DI + + + +A + SS N E LI RF + I S Sbjct: 397 ---DIDIQGFDFDTAIAAYL-IDSSKANY--------------EVFDLINRFLEKDIKSD 438 Query: 144 PYD----CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 D C+ +L K D++ EL+ + E L + ++ G+ Sbjct: 439 SNDLKAICSSYLKKLYEKLKEMLHKEDMD---ELYYK------VEHPLIYVLSSMESIGF 489 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +I+ D + +L+ ++ +K +++I +L D + L LF + ++ ++ Sbjct: 490 KINQDKLEELRVKFKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKT 548 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGA 314 + + +L + I K+N+ L + DG + Sbjct: 549 G--YSTNQEVLEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFN-QTV 605 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-G 373 + TGR S QN+P + +R I + Sbjct: 606 TTTGRLSSTEPNLQNIPIKY------------------------EMGKEIRKVFIPQDSD 641 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ D + IE RVLA +A + I AF + DI+ T ++ F P+D+V+ R+ K Sbjct: 642 DILISCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAK 701 Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-------------- 475 + + Y A+ K + + + + ++ Sbjct: 702 AVNFGIVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTI 761 Query: 476 -------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQG---VL 518 + +S + ++ A+ + G+A +++K A R K+ +L Sbjct: 762 LNRRRFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELIL 821 Query: 519 QLWKDL 524 Q+ +L Sbjct: 822 QVHDEL 827 >gi|262184186|ref|ZP_06043607.1| DNA polymerase I [Corynebacterium aurimucosum ATCC 700975] Length = 835 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 69/402 (17%), Positives = 138/402 (34%), Gaps = 63/402 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +D E L + + G +D D++ ++ ++ + + +L + Sbjct: 433 YTDLELPLVSILAQMEAAGIAVDRDVLETQRDAFIEQVNEQERAARELAGDDSLNLNSPK 492 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA--SSGSAILK----LN 293 L+ LF D+ + + I QLA L + K L Sbjct: 493 QLQAVLFDT--FDMPKTKKTKTGYSTAAKEIEQLAATHPHPFLDHLLAHREYQKMKTTLE 550 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + + DGR+ T + TGR S QN+P + + Sbjct: 551 GLIKTIQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEA----------------- 592 Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +RS + G L+ AD + IE RV+A ++ + I+A+ GED++ Sbjct: 593 -------GRQIRSAFVVGEGYETLITADYSQIEMRVMAHLSADPGLIEAYREGEDLHNYV 645 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 +K F+ P+D+V+ E R K M L Y G ++ A ++ + + Sbjct: 646 GSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMESYFERFGG 705 Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507 + D ++ + ++ A+ + GTA +++K Sbjct: 706 VKRYLDEVVVQARKDGYTSTVFGRRRYLPELNSDNRVARENAERAALNAPIQGTAADIIK 765 Query: 508 KAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545 A + + ++ + + V G + +R+ Sbjct: 766 VAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILE 807 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656 +Q + DI+ M K ++L VHDE+V E V + M K Sbjct: 756 IQGTAADIIKVAMIRVDKALEALASRVLLQVHDELVVEVAPGEAEDVQRILEREMDKAIE 815 >gi|308174603|ref|YP_003921308.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|307607467|emb|CBI43838.1| DNA polymerase I [Bacillus amyloliquefaciens DSM 7] gi|328554526|gb|AEB25018.1| DNA polymerase I [Bacillus amyloliquefaciens TA208] gi|328912932|gb|AEB64528.1| DNA polymerase I [Bacillus amyloliquefaciens LL3] Length = 879 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 80/483 (16%), Positives = 168/483 (34%), Gaps = 70/483 (14%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALN 117 DE+ +S ++ + GI++ K ++LA P + + + Sbjct: 365 EDESKKKWVFDSK-RSVVALRWQGIEL--KGTEFDALLAAYIINPGNSYDDVASVAKEYG 421 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + ++K E A + KG+ + P + A+H+ + + + +L Sbjct: 422 LNI-VSKDE------AVYGKGAKHAVPAEKELADHLARKAAAVNSLRDKLLHALKENNQL 474 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 D E L L+ + G ++D++ + ++ E + + K+ +E I + + Sbjct: 475 ELYEDLELPLALILGEMESMGVKVDVERLKRMGEELRAKLKEYEEKIHDIAGEPF-NINS 533 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L + LF G+ +V ++ T +L IL + Sbjct: 534 PKQLGVILFDKLGLPVVKKTKTGYSTSADVLEKLADKHDIVAYILQYRQIGKLQSTYIEG 593 Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + D ++ ++TGR S QN+P + Sbjct: 594 LLKVTRKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------------------- 632 Query: 354 ADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + S L+ AD + IE RVLA I+ ++ I+AF N DI+ T Sbjct: 633 ----LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDIHTKT 688 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 F+ D+V++ R K + + Y G ++ G + ++ ++ Sbjct: 689 AMDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPG 748 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + + S + ++ A+ + G+A +++K Sbjct: 749 VKAYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIK 808 Query: 508 KAW 510 KA Sbjct: 809 KAM 811 Score = 44.0 bits (102), Expect = 0.090, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 20/185 (10%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKD--LTEGFACVVQEGGSISARRVANVPRL 549 + + + V +A R + + G++ D L++ +E G+ R + + P Sbjct: 690 MDVFHVSEDEVTQAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAGAFIDRYLESFPG- 748 Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRD 608 V + V + Y+ TS+ R++ + N +Q + D Sbjct: 749 VKAYMEESVQEAKQKGYVTTLMQRR---RYIPELTSRNFNLRSFAERTAMNTPIQGSAAD 805 Query: 609 ILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGL 661 I+ + M + ++L VHDE++ E P + L +M + Sbjct: 806 IIKKAMIDMAAELKEKNLKARLLLQVHDELIFEAPKEEIKILEKLVPEVMEHALD--LDV 863 Query: 662 PLKAE 666 PLKA+ Sbjct: 864 PLKAD 868 >gi|81429016|ref|YP_396016.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] gi|78610658|emb|CAI55709.1| DNA-directed DNA polymerase I [Lactobacillus sakei subsp. sakei 23K] Length = 886 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 78/496 (15%), Positives = 165/496 (33%), Gaps = 67/496 (13%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L +L D + ++ + LG+ + + +LA + N L Sbjct: 365 LKDWLEDASHPKAVFGVKRTQVAANR-LGVHLAGVDF--DLLLASYL---LNTTNNSNDL 418 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR-ANHVQAWQLFGEYCKRDVEATRELFK 175 +L + + + A + KG+ + P + H+ + + +E + + Sbjct: 419 GTVANLHEYQNVQTDEAVYGKGAKRAVPTEPALLYQHLVQKAAAIYHLQPQLEEQLKEHQ 478 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + +D E L L+ + G R+D + ++ +Q K L+E + + Sbjct: 479 QFDLFTDMELPLALVLAQMEITGIRVDASRLQQMGSEFSQTLKILEEKVYAEAGETF-NI 537 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT- 294 L + LF G+ +V ++ + + + QL KD + + I K+ + Sbjct: 538 NSPKQLGVILFEKMGLPVVKKTKTGYSTAVD--VLEQLRKDAPIVQTILDYRQIAKIQST 595 Query: 295 ----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L +++ D ++ ++TGR S QN+P Sbjct: 596 YVEGLLKSIHQDNKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------- 635 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + S ++ +D + IE RVLA I+G+ +AF DI+ Sbjct: 636 -----VRLAEGRKIRQAFVPSHPDWQMFASDYSQIELRVLAHISGDANMQEAFKEDRDIH 690 Query: 410 VTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 T K F D+V+ + R K + Y G ++ + + + Sbjct: 691 ANTAMKIFGLNSADEVTPDMRRQAKATNFGIVYGISDYGLSQNIGISRQEAKRFIDAYFE 750 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 F + + ++ A+ + G+A Sbjct: 751 QYPGVQQFMVDIVKKAREEGYVETLFHRRRYLPDIHAKNFNLRSFAERTAMNTPIQGSAA 810 Query: 504 ELVKKAWRAKHQGVLQ 519 +++K A Q + + Sbjct: 811 DIIKVAMILMQQELKK 826 >gi|167751303|ref|ZP_02423430.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] gi|167655810|gb|EDR99939.1| hypothetical protein EUBSIR_02289 [Eubacterium siraeum DSM 15702] Length = 829 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 76/402 (18%), Positives = 140/402 (34%), Gaps = 68/402 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E L + + G ID D + + + ++ +K+ +I + + Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEF-NIGSPK 487 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-----T 294 L LF + ++ + + L + L + A+ KL Sbjct: 488 QLGSVLFEKLALPSAKKTK--TGYSTNADVLESLMDKHPIVPLITEYRALTKLQNTYVTG 545 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V DGR+ T + +RTGR S QN+P + Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRT-------------------- 584 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R A +G LV AD + IE RVLA I+G++ KAF +G DI+ T + Sbjct: 585 ----PLGREMRRFFTAKDGCLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470 + FN PI+ V+ + R+ K + + Y GA K ++ + + Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIRSYLSKYSGIA 700 Query: 471 TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509 + + A++ + A + GTA +++K A Sbjct: 701 HYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIA 760 Query: 510 WRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541 + + +LQ+ +L E ++ + Sbjct: 761 MIKVYNRLKESGLDARLILQVHDELIVEAKEDCAEKVALLLK 802 Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 18/162 (11%) Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRH 554 + +L KA +A + G++ A + + +S + + R + ++ Sbjct: 644 NQPIEWVTPDLRSKA-KAVNFGIVY------GIGAFSLSKDIGVSVPKASEYIRSYLSKY 696 Query: 555 KR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 V + R + G Y+ ++ + +G ++ +N +Q + DI Sbjct: 697 SGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQGTAADI 756 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVG 645 + M ++G D ++L VHDE++ E + V Sbjct: 757 IKIAMIKVYNRLKESGLDARLILQVHDELIVEAKEDCAEKVA 798 >gi|146319032|ref|YP_001198744.1| DNA polymerase I [Streptococcus suis 05ZYH33] gi|146321240|ref|YP_001200951.1| DNA polymerase I [Streptococcus suis 98HAH33] gi|253752097|ref|YP_003025238.1| DNA polymerase I [Streptococcus suis SC84] gi|253753922|ref|YP_003027063.1| DNA polymerase I [Streptococcus suis P1/7] gi|253755203|ref|YP_003028343.1| DNA polymerase I [Streptococcus suis BM407] gi|145689838|gb|ABP90344.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 05ZYH33] gi|145692046|gb|ABP92551.1| DNA polymerase I - 3'-5' exonuclease and polymerase domain [Streptococcus suis 98HAH33] gi|251816386|emb|CAZ52017.1| DNA polymerase I [Streptococcus suis SC84] gi|251817667|emb|CAZ55415.1| DNA polymerase I [Streptococcus suis BM407] gi|251820168|emb|CAR46523.1| DNA polymerase I [Streptococcus suis P1/7] gi|292558680|gb|ADE31681.1| DNA polymerase I [Streptococcus suis GZ1] Length = 878 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 71/477 (14%), Positives = 149/477 (31%), Gaps = 76/477 (15%) Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRI 201 + ++F + R V+ E + ++ L D E L + + G ++ Sbjct: 436 DLPEREIFFPHLARKVQVLIETEEPMLTKLEENQQLDLLFDMELPLANVLAKMEIAGIKV 495 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 + + + +Q +L ++I +L + L LF G+ L + Sbjct: 496 EAETLKAMQSENEVLIDQLTKEIYELAGQEF-NINSPKQLGTILFEDMGLPLEYTKKTKT 554 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASR 316 + + +LA + I KL + L +A+ DG++ ++ Sbjct: 555 GYSTAVDVLERLAPIAPVVSKILEYRQITKLQSTYVVGLQDAILEDGKIHTRYV-QDLTQ 613 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P +R + S Sbjct: 614 TGRLSSTDPNLQNIP------------------------VRLEQGRLIRKAFVPSLENSV 649 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKV 434 L+ +D + IE RVLA I+ + I+AF G DI+ +T + F + V+ R K Sbjct: 650 LLASDYSQIELRVLAHISQDQHLIEAFQQGADIHTSTAMRVFGIEKAEYVTPNDRRNAKA 709 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------- 475 + + Y G + + + + + + Sbjct: 710 VNFGVVYGISDFGLSNNLGITRKEAKAYIDTYFERFPGIKNYMETIVREARDKGYVETIY 769 Query: 476 ------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFA 529 S + +++ A+ + G+A +++K A + + + Sbjct: 770 KRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKVAMINLDKALTE--------AG 821 Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + V VP + K V + S+ L + + ++ Sbjct: 822 LATRMLLQVHDEIVLEVPVAELETVKAMVKETMESAISLSVPLIADENEGSTWYEAK 878 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N K ++L VHDEIV E P +V + M Sbjct: 798 IQGSAADILKVAMINLDKALTEAGLATRMLLQVHDEIVLEVPVAELETVKAMVKETMESA 857 Query: 655 PSWAKGLPLKAE 666 S +PL A+ Sbjct: 858 IS--LSVPLIAD 867 >gi|4389065|pdb|3BDP|A Chain A, Dna Polymerase IDNA COMPLEX gi|4389072|pdb|4BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 11 Base Pairs Of Duplex Dna After Addition Of Two Datp Residues gi|4389123|pdb|2BDP|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna Length = 580 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 84/500 (16%), Positives = 171/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVRAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|169824040|ref|YP_001691651.1| DNA polymerase I [Finegoldia magna ATCC 29328] gi|167830845|dbj|BAG07761.1| DNA polymerase I [Finegoldia magna ATCC 29328] Length = 875 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 93/546 (17%), Positives = 189/546 (34%), Gaps = 82/546 (15%) Query: 28 AVITLCA--YAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFE-RILFKK 82 L Y D+EPV T++ + +L++ ++E + F+ + Sbjct: 319 FTFALFNDDYYVDNEPVIFAIYTDKVYITRNVELVESFKEEFESKDINKLSFDIKPCIYH 378 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCK 137 + I V+ PS ++ + + + GK + Sbjct: 379 LMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTIL 438 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTIND 196 S + N+V + +F + E E L D E L + + Sbjct: 439 ESDEKEI-----DNYVVKYMMFTNKLYEKISEIEEEDMMHLY--RDVEIPLIKVLCDMEF 491 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G + + ++++ EL E K +++ + +L I + + L LF + ++ Sbjct: 492 TGVCVKKETLVEMGELFEDEIKSIEKSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKK 550 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 ++ T + +L + D IL + ++ + + + DG++ T Q Sbjct: 551 NKTGPSTDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTI 610 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A +TGR S QN+P + +R + S G Sbjct: 611 A-QTGRISSTNPNLQNIPIRT------------------------EEGRLIRKAFVPSEG 645 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ AD + IE RVLA +A ++ + AF +G DI+ T ++ F DKV+ QR+ K Sbjct: 646 NMLLDADYSQIELRVLADLANDEVMLDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAK 705 Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------- 474 + + Y G +K ++ + K + + Sbjct: 706 AVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETI 765 Query: 475 ------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518 + +S + ++ A+ + G+A +++K A K + +L Sbjct: 766 MNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLIL 825 Query: 519 QLWKDL 524 Q+ +L Sbjct: 826 QVHDEL 831 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 11/134 (8%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + + + + + V I + + Y+ S+ Sbjct: 726 ITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRR---RYIPELKSKNYNV 782 Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M N K ++L VHDE++ + P Sbjct: 783 RSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREK 842 Query: 644 VGTLCS-LMTKNPS 656 V + +MT Sbjct: 843 VLEIMKDVMTHAVD 856 >gi|229828896|ref|ZP_04454965.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] gi|229792059|gb|EEP28173.1| hypothetical protein GCWU000342_00981 [Shuttleworthia satelles DSM 14600] Length = 910 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 82/474 (17%), Positives = 156/474 (32%), Gaps = 70/474 (14%) Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDL 187 F K D D H + + Y ++L KRL + E L Sbjct: 460 FFGKKKADQIWEDPEEVEHRMHYACYQAYVASRAP--QKLLKRLEEQGMRALYEEVELPL 517 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + G ++ + + + + +L+E I + + L LF Sbjct: 518 VYTLYDMETAGIAVEKEALKSYGDQLVGRINELEEGIYREAGETF-NINSPKQLGEVLFG 576 Query: 248 ITGIDLVDMSE---GTLKSILSHSNIT-QLAKDLILNRLASSGSAILKLNTLSEAVSSDG 303 G+ ++ T +L + Q+ +D++ R + + L++ ++ DG Sbjct: 577 QLGLPGARKTKTGYSTAADVLDPLAVNYQIVRDVLEFRQ-LTKLKSTYADGLAKVIADDG 635 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ + Q + TGR S QN+P + Sbjct: 636 RIHSSFQ-QTVTATGRLSSTEPNLQNIPIR------------------------MELGKE 670 Query: 364 VRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK 423 +R A G V +D + IE RVLA ++ + I+A+ G+DI+ T + F+TP ++ Sbjct: 671 IRRVFPAMEGCVFVDSDYSQIELRVLAHLSQDPKLIEAYRQGKDIHRATASLVFHTPFEE 730 Query: 424 VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 V+ +QR+ K + + Y G AK + + + D Sbjct: 731 VTDQQRSNAKAVNFGIVYGISAFGLAKDLGISREEAQEYIDGYFAAYPRLHDYLDGLVEF 790 Query: 480 SH--------------------HLWMQDQY-PEFAVKDKLIGTACELVKKAWRAKHQG-- 516 + +MQ Q+ A+ + GTA +++K A H Sbjct: 791 ARKEGYAVTLFGRRRPVPELKNSNFMQRQFGERVAMNAPVQGTAADIIKIAMVRVHDRLA 850 Query: 517 ----VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 +L + + E R + + + ++ I S R Sbjct: 851 KEGLRSRLILTVHDELLVETFEQEEQEVREILDQEMRGAAQLSVELEIDTHSGR 904 Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642 +R +G ++ N VQ + DI+ M ++LTVHDE++ ET + Sbjct: 817 QRQFGERVAMNAPVQGTAADIIKIAMVRVHDRLAKEGLRSRLILTVHDELLVETFEQEEQ 876 Query: 643 SVGTLCSL 650 V + Sbjct: 877 EVREILDQ 884 >gi|2281294|gb|AAB64184.1| DNA polymerase I (PolI) [Lactococcus lactis subsp. cremoris MG1363] Length = 877 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 78/543 (14%), Positives = 173/543 (31%), Gaps = 98/543 (18%) Query: 25 AEQAVIT-----------LCAYAWDDEPVKLW-----DRTEQSAMPSDLLQYLRDETVMC 68 A+ + A+AW + K++ D + P + + ++ Sbjct: 326 ADDFFYLETLGENYHREQIVAFAWGNSE-KIYVSKNLDLLTEMKFPENTYDFKKN----- 379 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE--HLTKME 126 R+L ++I ++LA+ + + HL E Sbjct: 380 --------RVLLSH---LNIELPLVKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDE 428 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E F KG+ + P D +H+ K + A ++ LSD E Sbjct: 429 EI------FGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELP 482 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + G + + + ++ ++ L +I L + L + LF Sbjct: 483 LAEVLAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILF 541 Query: 247 LITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 + + ++ + + + ++ + ++ R + + L ++ D Sbjct: 542 EKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQI-NKEQSTYVKGLIPQIADD 600 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 601 GKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------------------VRLEEGR 635 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI- 421 +R + S L+ +D + IE RVLA I+ ++ I AF +G DI+ +T + F Sbjct: 636 KIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKA 695 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474 + V+ R K + + Y G A+ ++ + + T+ + Sbjct: 696 EDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIV 755 Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + ++ A+ + G+A +++K A + Sbjct: 756 REARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKA 815 Query: 517 VLQ 519 + + Sbjct: 816 LTE 818 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 +Q + DIL M N K ++L VHDEI+ + P + L M + Sbjct: 797 IQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA 856 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 857 IELA--VPLKVD 866 >gi|125625183|ref|YP_001033666.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|146345413|sp|O32801|DPO1_LACLM RecName: Full=DNA polymerase I; Short=POL I gi|124493991|emb|CAL98989.1| DNA polymerase I [Lactococcus lactis subsp. cremoris MG1363] gi|300071992|gb|ADJ61392.1| DNA polymerase I [Lactococcus lactis subsp. cremoris NZ9000] Length = 877 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 78/543 (14%), Positives = 174/543 (32%), Gaps = 98/543 (18%) Query: 25 AEQAVIT-----------LCAYAWDDEPVKLW-----DRTEQSAMPSDLLQYLRDETVMC 68 A+ + A+AW + K++ D + P + + ++ Sbjct: 326 ADDFFYLETLGENYHREQIVAFAWGNSE-KIYVSKNLDLLTEMKFPENTYDFKKN----- 379 Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE--HLTKME 126 R+L ++I ++LA+ + + HL E Sbjct: 380 --------RVLLSH---LNIELPLVKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDE 428 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E F KG+ + P D +H+ K + A ++ LSD E Sbjct: 429 EI------FGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELP 482 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + G + + + ++ ++ L +I L + L + LF Sbjct: 483 LAEVLAKMEITGISVSQNTLEEIGAENEEKLASLTREIYDLAGEEF-NINSPKQLGVILF 541 Query: 247 LITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 + + ++ + + + ++ + ++ R + + + L ++ D Sbjct: 542 EKLQLPVGKKTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQST-YVKGLIPQIADD 600 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G++ ++TGR S QN+P Sbjct: 601 GKIHTRYV-QDLTQTGRLSSVDPNLQNIP------------------------VRLEEGR 635 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI- 421 +R + S L+ +D + IE RVLA I+ ++ I AF +G DI+ +T + F Sbjct: 636 KIRKAFVPSQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTAMRVFGIEKA 695 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474 + V+ R K + + Y G A+ ++ + + T+ + Sbjct: 696 EDVTANDRRNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIV 755 Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + ++ A+ + G+A +++K A + Sbjct: 756 REARDKGFVETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKA 815 Query: 517 VLQ 519 + + Sbjct: 816 LTE 818 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 +Q + DIL M N K ++L VHDEI+ + P + L M + Sbjct: 797 IQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEDIKALVKQTMEEA 856 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 857 IELA--VPLKVD 866 >gi|38146979|gb|AAR11874.1| DNA polymerase I [Thermoanaerobacterium sp. AZ3B.1] Length = 833 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 92/542 (16%), Positives = 185/542 (34%), Gaps = 87/542 (16%) Query: 29 VITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI 88 I A+++ V D + DL + E H + ++ GI+ Sbjct: 289 EIKKIAFSFGSNTVY-IDIFQIE----DLKEIFEKEEFEFTTHEIK-DFLVKLSYKGIEC 342 Query: 89 PSKRWICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDS 142 SK +I T+++A S + L + +G+ Sbjct: 343 KSK-YIDTAIMAYLLNPSESNYDLDRVLKKYLKVDVPSYEEVFGKGRDKKKLEEIREDVL 401 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRID 202 Y C+R H+ + ++ K L + E L + +++ G+ +D Sbjct: 402 ADYICSRCVHLFDLREKLMNFIE----EMDMKKLL---LEIEMPLVEVLKSMEVSGFTLD 454 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +++ +L + I ++ + I K + L +LF + ++ ++ Sbjct: 455 KEVLKELSQKIDDRIAEILDKIYKEAGYQF-NVNSPKQLSEFLFEKLNLPVIKKTKTGYS 513 Query: 260 TLKSILSHSNI-TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 T +L + D+I R + ++ + + R+ + + TG Sbjct: 514 TDSEVLEQLVPYNDVVSDIIEYRQ-LTKLKSTYIDGFLPLMDENNRVHSNFK-QMVTATG 571 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLV 377 R S QN+P +E +R I +V Sbjct: 572 RISSTEPNLQNIPIRE------------------------EFGRQIRRAFIPRTKDGYIV 607 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA ++G++ I++F N EDI++ T A+ F P++KV+ E R K + Sbjct: 608 SADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKAVNF 667 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 + Y G ++ K + + + K + + Sbjct: 668 GIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIMNRR 727 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWK 522 + S + + Q A+ + G+A +++K A K Q +LQ+ Sbjct: 728 RYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQVHD 787 Query: 523 DL 524 +L Sbjct: 788 EL 789 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 17/200 (8%) Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKL-IGTACELVKKAWRAKHQGVLQLWKD 523 + S + + +H + F + + + TA E+ K + + K Sbjct: 605 YIVSADYSQIELRVLAHVSGDEKLIESFMNNEDIHLRTAAEVFKVPMEKVTPEMRRAAKA 664 Query: 524 LTEGFACVVQEGG-----SISARRVANVPRLVMRRHKR----DVHIVLPSSRRLVYSDVK 574 + G + + G IS + R+K IV + + + Sbjct: 665 VNFGIIYGISDYGLSRDLKISRKEAKEYINNYFERYKGVKEYIEKIVRFAKENGYVTTIM 724 Query: 575 GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLT 627 Y+ S+ +R+ +L N +Q + DI+ M ++ ++L Sbjct: 725 NRRRYIPEINSRNFTQRSQAERLAMNAPIQGSAADIIKMAMVKVYEDFKKLQLKSQLILQ 784 Query: 628 VHDEIVSETPDTPYFSVGTL 647 VHDE+V +T V + Sbjct: 785 VHDELVVDTYKDEVDIVKKI 804 >gi|289450265|ref|YP_003475168.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184812|gb|ADC91237.1| DNA-directed DNA polymerase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 922 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 89/487 (18%), Positives = 160/487 (32%), Gaps = 115/487 (23%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +S + L + + G +D ++ + E + E + ++I KL + Sbjct: 521 VSQVDLPLVEVLTQMERDGVAVDEAVLQRQTEAFSSEIADIADEIYKLAGHEF-NLNSPR 579 Query: 240 ALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF G+ + T L H DLIL S + L Sbjct: 580 QLAEVLFNELGLPGGKKLKSGYSTSAEDLMHLQDLHPIVDLILRYRMLSKLLSTFIVGLH 639 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + +++D R+ T ++TGR S QN+P + Sbjct: 640 KYIAADHRIHTTF-HQTLTQTGRLSSSDPNLQNIPART---------------------- 676 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R+ IA+ G L+ AD + IE R+LA ++G+ +KAFA EDI+ T A+ Sbjct: 677 --EEGRRIRAAFIAAPGCILIDADYSQIELRLLAHLSGDTAMLKAFAAKEDIHALTAARV 734 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 F+ V+ E R +GK + ++ Y A ++A + + + + Sbjct: 735 FHMDPVDVTSEHRRVGKTINFSIVYGISA---FSLAQDLHISVAEAKNYIAE-------- 783 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 + A + + DL E + Sbjct: 784 ---------------------------------YYATYPQIKAYLNDLVERAK--IDGYV 808 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 +R +P L + + R + G+ +NT Sbjct: 809 ETMFKRRRYIPELKSKNYNRRLF---------------GERVAMNTP------------- 840 Query: 597 LTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS- 649 +Q + DI+ M N + ++L +HDE+V E P+ + V L Sbjct: 841 -----IQGTAADIMRLAMVNLARKLREKKLKSHMILQIHDELVLEVPEPEFAEVAELLRN 895 Query: 650 LMTKNPS 656 M + Sbjct: 896 EMERVID 902 >gi|228929634|ref|ZP_04092652.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228830021|gb|EEM75640.1| DNA polymerase I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 891 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 80/503 (15%), Positives = 171/503 (33%), Gaps = 82/503 (16%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 T+ + ++L D + ++ + K GID+ + ++A Sbjct: 363 TDIALNSDAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL---- 415 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L A +F + KM+E A+ K + RA V ++ E+ R V Sbjct: 416 -LDPADTDKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKV 466 Query: 168 EATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 ++ + + ++ E L + + +G ++D + + + E +A Sbjct: 467 HVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRL 526 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 K+++++I KL + L + LF + ++ ++ + + ++ Sbjct: 527 KEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI 585 Query: 278 I---LNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 I L+ + L + V D ++ ++TGR S QN+P + Sbjct: 586 IPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR 644 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWI 392 +R + G + AD + IE RVLA I Sbjct: 645 ------------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHI 680 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 A + ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 681 ANDKGLVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNL 740 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487 ++++ ++ + D + S + ++ Sbjct: 741 GITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRS 800 Query: 488 QYPEFAVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 801 FAERTAMNTPIQGTAADIIKKAM 823 >gi|258515627|ref|YP_003191849.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] gi|257779332|gb|ACV63226.1| DNA polymerase I [Desulfotomaculum acetoxidans DSM 771] Length = 888 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 87/507 (17%), Positives = 165/507 (32%), Gaps = 99/507 (19%) Query: 63 DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 D + +++ + L GI+I + +LA P + S Sbjct: 390 DSKIKKCCYDTKADLWLL-HYYGIEINQPGF--DVMLADYLLNPGKSARSLPETALSHLD 446 Query: 123 TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE---LFKRLIP 179 ++EG Y A E R V+ + L ++ Sbjct: 447 IVLQEGSE-------------TYLPASA----------EVISRLVDILQSKLLLQEQENL 483 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D E L + ++ G +D + + + E + ++ + L DI + I + T Sbjct: 484 YYDIELPLLKVLASMERTGVSVDKEQLQLMSEELNKKLQVLTTDIYEHAGE-IFNINSTK 542 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 L LF + ++ + + +LA D + L + KL + Sbjct: 543 QLGSILFEKLKLKAGKKTK--TGYSTDVTVLEELAGDHPVVSLLLEYRQLAKLKSTYVDG 600 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L+ ++ G+L T + TGR S QN+P + Sbjct: 601 LTGLINPQTGKLHTTF-HQAVTATGRLSSSEPNLQNVPIR-------------------- 639 Query: 354 ADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 A +R + + AD + IE R+LA IA ++ + AFA +DI+ T Sbjct: 640 ----LDAGRKIRKFFVPCKPDNFIFSADYSQIELRILAHIAQDNNLMDAFAKKQDIHTRT 695 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ F +D+V+ E R K + + Y G AK K G + + Sbjct: 696 ASEVFGVAMDEVTPEMRGRAKAVNFGIVYGISDFGLAKDIKVTRKEAGRYINNYFNRYSG 755 Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507 + D E+ + ++ A+ + G+A +++K Sbjct: 756 VKAYIDRVIREAREKGYVTTILNRRRYLPDLFSSNRVVRSFGERTAMNTPIQGSASDIIK 815 Query: 508 KAW----------RAKHQGVLQLWKDL 524 A + +LQ+ +L Sbjct: 816 LAMVLIYREMRKRKLSSTMILQVHDEL 842 >gi|306835977|ref|ZP_07468969.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] gi|304568143|gb|EFM43716.1| DNA-directed DNA polymerase I [Corynebacterium accolens ATCC 49726] Length = 882 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 64/419 (15%), Positives = 138/419 (32%), Gaps = 59/419 (14%) Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + + +D E L + + G +D+D++ ++ ++ + Sbjct: 461 MELAEKLTTELQDIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQ 520 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + +L + L+ LF + ++ + + Sbjct: 521 ERSARELAGDDKLNLNSPKQLQKVLFETFDMPKTKKTKTGYSTAAKEIEQLAIKHPHPFL 580 Query: 281 RLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + K L L + V DGR+ T + TGR S QN+P + + Sbjct: 581 DHLLAHREYQKMKTTLEGLIKTVQPDGRIHTTFN-QTVTSTGRLSSTEPNLQNIPVRTEA 639 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGE 395 +RS I G ++L+ AD + IE RV+A ++ + Sbjct: 640 ------------------------GRQIRSAFIVGEGFEQLMTADYSQIEMRVMAHLSAD 675 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+A+ GED++ ++ F+ P+D+V+ E R K M L Y G ++ Sbjct: 676 PGLIEAYKAGEDLHNFVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIP 735 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 A ++ + + + D ++ + ++ Sbjct: 736 AGEAKSIMESYFERFGGVKKYLDDVVEQARKDGYTATLFGRRRYLPELNSDNRLARENAE 795 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVL----QLWKDLTEGFACVVQEGGSISARRVAN 545 A+ + GTA +++K A + + ++ + + V G + R + Sbjct: 796 RAALNAPIQGTAADIIKVAMIRVDRALRDMKSRVLLQVHDELVVEVAPGEADQVREILE 854 >gi|317129905|ref|YP_004096187.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] gi|315474853|gb|ADU31456.1| DNA polymerase I [Bacillus cellulosilyticus DSM 2522] Length = 874 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 74/483 (15%), Positives = 156/483 (32%), Gaps = 66/483 (13%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119 DE N+ + DI + +A PS S + A ++ Sbjct: 360 NDEKNEKWIFNAKQAIVSL---GWNDISLRGVTFDIQIASYLIDPSASSHEMADISNRKR 416 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + K +E A + KG P + A H+ K ++E+ + ++ Sbjct: 417 SYTVKSDE-----AVYGKGKKRQVPEEEIVAQHLVRKAAAINVLKEELESELKENEQFEL 471 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D E L ++ + G I+ + +L++ E ++ + ++++I +L + Sbjct: 472 FKDLEMPLSIVLGHMEMNGISINKEELLQMGETLSDKLSTMEKEIHELAGVEF-NINSPK 530 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + +V ++ T +L + IL + L Sbjct: 531 QLGEILFDKLQLPVVKKTKTGYSTSADVLEQLRDKHEIVEKILLYRQLGKLNSTYIEGLL 590 Query: 297 EAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + G++ ++TGR S QN+P + Sbjct: 591 KVIHQKSGKIHTIFN-QALTQTGRLSSTEPNLQNIPIR---------------------- 627 Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + + AD + IE RVLA I+ ++ AF D++ T Sbjct: 628 --LEEGRKIRRAFVPERENAVIFAADYSQIELRVLAHISNDENLTNAFKENMDVHTKTAM 685 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F+ D+V+ R K + + Y G ++ + ++ + Sbjct: 686 DVFHVSADEVTSLMRRTAKAVNFGIVYGISDYGLSQNLGITRKEAKKFIDRYFDSYPGVK 745 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + + S + ++ A+ + G+A +++KKA Sbjct: 746 EYMESIVEEARVNGYVTTMLHRRRYLPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKA 805 Query: 510 WRA 512 Sbjct: 806 MVK 808 >gi|269215934|ref|ZP_06159788.1| DNA polymerase I [Slackia exigua ATCC 700122] gi|269130193|gb|EEZ61271.1| DNA polymerase I [Slackia exigua ATCC 700122] Length = 905 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 61/367 (16%), Positives = 124/367 (33%), Gaps = 55/367 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D + L + + G RID+D + ++ +A+E + + +L + L Sbjct: 506 DIDLPLVPVLAVMERVGARIDVDALAEMGRSVAEEIDGIRTRVFELAGEEF-NLDSPKQL 564 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF G+ ++ T LS IL + + L Sbjct: 565 SVVLFEKLGLPHGKKTQRGYSTDAKTLSKLEDVHPIAREILRYRELAKMESTYIEALPRM 624 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG + + TGR S QN+P + Sbjct: 625 RAGDGLVHTHFN-QTVTTTGRLSSSDPNLQNIPVRT------------------------ 659 Query: 359 LASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R C + G + AD + IE R+LA ++ ++ + AF +G D + +T A+ F Sbjct: 660 EFGRRIRGCFVPLRTGDLFMSADYSQIELRLLAHLSRDEHLVHAFCSGADFHASTAARVF 719 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P+++V+ R+ K + + Y G A+ + ++ + F Sbjct: 720 GVPLEEVTPSMRSRAKAVNFGIVYGQQAFGLAQNLGIGFKEAQEMIDRYFEAYPGVRAFL 779 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 D + ++ + + A+ + G+A ++VK A Sbjct: 780 DGTVEEVRACGYATTMFGRRRHIPELKAKNPAQRGFGERTAMNHPMQGSAADIVKMAMNE 839 Query: 513 KHQGVLQ 519 + ++ Sbjct: 840 VQRRLVD 846 >gi|75906804|ref|YP_321100.1| DNA polymerase I [Anabaena variabilis ATCC 29413] gi|75700529|gb|ABA20205.1| DNA polymerase A [Anabaena variabilis ATCC 29413] Length = 977 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 108/630 (17%), Positives = 201/630 (31%), Gaps = 128/630 (20%) Query: 48 TEQSAMPSDL-----LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLART 102 T+ + D+ L N+ F+R++F L I + +LA Sbjct: 426 TKGENLSQDIVLTALRPILESADYPKTFQNAKFDRLVF---LVQGINLTGVVFDPMLASY 482 Query: 103 NGLPSS------LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 P + L L L ++ + +GK IA ++ + +Q + Sbjct: 483 VLNPDTSHNLTDLTQRYLGLTIQNYVDLVPKGKT-IADINISAVANYCC-------LQVY 534 Query: 157 QLFGEYCK--RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 F K ++ T L K L + E+ L + T+ G RID + +L + + Sbjct: 535 ATFQLVAKLREELAKTPNLDKLLR---EVEQPLESVLATVEYTGVRIDSAYLHELSQQLE 591 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA 274 + KL E +L + L LF G+ + + + +L Sbjct: 592 IDLAKLQEQATELAGEKF-NLGSPKQLSYILFEKLGLSTKYSRKIQTGYSTDAATLEKLQ 650 Query: 275 K-------DLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQ 326 + + I S ++ L V D R+ A+ TGR S Sbjct: 651 EVDETGFVNAITEYRTLSKLKSTYVDALPALVRPDTQRVHTDFN-QTATSTGRLSSSNPN 709 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEA 386 QN+P + S +R + +G + AD + IE Sbjct: 710 LQNIPIRT------------------------AFSRQIRKAFLPKSGWLMAAADYSQIEL 745 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK 446 R+LA ++ E ++A+ EDI+ T F D ++ ++R I K + + Y G+ Sbjct: 746 RILAHLSQEPLLVQAYQQNEDIHTVTAKLVFEK--DDINSDERRIAKTINFGVIYGMGS- 802 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + G+D ++ +K + E + + ++ ++ Q + ++G Sbjct: 803 --LKFSRSTGIDKNVANEFIKRFN--ERYAKIFAYLEGVKKQAISLGYVETILG------ 852 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 D T I ++ N Sbjct: 853 ---------RRRYFNFDSTSLLNLKGSNPEDIDLSKLKN--------------------- 882 Query: 567 RLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GY 622 L + L+R +Q S DI+ M + Sbjct: 883 -------------LGAKDAGLLRSAANAP------IQGSSADIIKIAMVQIHEVLKKYQA 923 Query: 623 DIVLTVHDEIVSETPDTPYFSVG-TLCSLM 651 ++L VHDE+V E P + + + S+M Sbjct: 924 RLLLQVHDELVFEVPPQEWAELQPQIKSVM 953 >gi|228999367|ref|ZP_04158946.1| DNA polymerase I [Bacillus mycoides Rock3-17] gi|228760312|gb|EEM09279.1| DNA polymerase I [Bacillus mycoides Rock3-17] Length = 877 Score = 229 bits (583), Expect = 1e-57, Method: Composition-based stats. Identities = 81/492 (16%), Positives = 171/492 (34%), Gaps = 74/492 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D+ + ++ + K I + ++A P+ Sbjct: 356 EAFKKWLADDEMRKYTFDAKRAIVALK---WKGIEIQGIYFDLLIAAYLLDPADTDKDFR 412 Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170 A + KM+E A+ + KG+ + P A HV + + + K VE Sbjct: 413 A------VAKMKETHAVKSDEEVYGKGAKRAVPAQDIVAEHVARKVHVLYDVQKTFVE-E 465 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ ++ E L + + +G +D + + + + +A K+++++I +L Sbjct: 466 LQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGT 525 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ ++ S + +L + + + Sbjct: 526 EF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMEHHEIIPKILHYRQLG 582 Query: 291 KLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KLN+ L + V D ++ ++TGR S QN+P + Sbjct: 583 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 630 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I S G + AD + IE RVLA IA + ++AF Sbjct: 631 -------------LEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQ 677 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 + DI+ T F D+V+ R K + + Y G ++ G + Sbjct: 678 HDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFI 737 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + S + ++ A+ + Sbjct: 738 EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 797 Query: 499 IGTACELVKKAW 510 G+A +++KKA Sbjct: 798 QGSAADIIKKAM 809 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + G ++L VHDE++ E P + L +M Sbjct: 797 IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA 856 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 857 IELA--VPLKVD 866 >gi|303229623|ref|ZP_07316411.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] gi|302515748|gb|EFL57702.1| DNA-directed DNA polymerase [Veillonella atypica ACS-134-V-Col7a] Length = 884 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 71/437 (16%), Positives = 143/437 (32%), Gaps = 62/437 (14%) Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + S ++ + S P T + V+ + D A Sbjct: 410 NGVARIHDVSLMAYLLDPTRTNYGYLYLTERFSVPSIATGSVDVECVSMVKALLAMDDAA 469 Query: 170 TRELF-KRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + L + L L ++ E L + G ID + + E + + ++I +L Sbjct: 470 VKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELEAVQQEIYEL 529 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF + ++ ++ + L + + + Sbjct: 530 AGETF-NINSPKQLGIILFEKMNLPVIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYR 586 Query: 288 AILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL L+ ++ + R+ T + TGR S QN+P + Sbjct: 587 SVAKLVSTYCEGLAVLINPETHRIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK----- 640 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ G LV AD + IE R+LA ++G++ IK Sbjct: 641 -------------------GREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIK 681 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +G+DI+ T A+ D+V+ E+R+ K + + Y G ++ Sbjct: 682 AFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAK 741 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 ++ + + D E+H + + A+ Sbjct: 742 NYIELYFSRYPKVKEYMDNMVIEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMN 801 Query: 496 DKLIGTACELVKKAWRA 512 + GTA +++K A Sbjct: 802 TPIQGTAADIIKLAMNK 818 >gi|219815961|gb|ACL37082.1| DNA polymerase I [uncultured bacterium] Length = 942 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 87/542 (16%), Positives = 172/542 (31%), Gaps = 93/542 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-SSLKNACLA 115 D+T + N ++ + K GI+I +K + +++A +P LA Sbjct: 418 FRSLFEDDTKTLIGQNIKYDFQVLKNY-GIEIKNK--LFDTMVAHFLIMPEMRHNMDILA 474 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + + E LI + K + + EY D + T +L Sbjct: 475 QTYLNYSPVSIE--TLIGKKGKEQTSMRDVEIEKI---------KEYAAEDADVTFQLKT 523 Query: 176 RLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 P ++ E L + I G +D+ + + + + ++++I Sbjct: 524 AFAPKLIENEVEKLFTEVEVPLIKVLANIEREGINLDVPALKEFSGQLQNDIIIVEKEIQ 583 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + + LF I T + +++L + Sbjct: 584 DFAGTKF-NVSSPKQVGEILFDYLKIVDKPKKTKTGQYATGEDVLSKLENAHPIVSKILD 642 Query: 286 GSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 ++KL +TL E V+ R+ + A TGR S QN+P + Sbjct: 643 YRELVKLKNTYVDTLPELVNEKTKRIHTSFNQVVAV-TGRLSSDNPNLQNIPIRTER--- 698 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWK 398 +R I + L+ AD + IE R++A I+G+ Sbjct: 699 ---------------------GRQIRKAFIPRDSDHVLLSADYSQIELRIVASISGDKNM 737 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASH 454 +AF G+DI+ T AK F V+KE R K + + Y GA + + Sbjct: 738 CEAFQLGKDIHTATAAKVFGVAEADVTKEMRYKSKSVNFGIIYGQGAFGLSENLNISRTE 797 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493 + + + + ++ D + + ++ A Sbjct: 798 AKELIDNYFKEYGAIKSYMDRTINFARENGYVKTLLGRKRWLRDITSANATVRSYAERNA 857 Query: 494 VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + + G+A +++K A K + +LQ+ +L E ++ Sbjct: 858 INAPIQGSAADMIKVAMINIYNELEKQNFKTKMLLQVHDELVFDVYKPELEKVKPIIEKL 917 Query: 544 AN 545 Sbjct: 918 MR 919 >gi|221060476|ref|XP_002260883.1| POM1 homolog [Plasmodium knowlesi strain H] gi|193810957|emb|CAQ42855.1| POM1 homolog, putative [Plasmodium knowlesi strain H] Length = 1861 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 94/541 (17%), Positives = 192/541 (35%), Gaps = 76/541 (14%) Query: 10 TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVM 67 T + G+ + E+ I L A ++ PV ++D + ++ + L + L++E V+ Sbjct: 1310 THCGLDIETTGLEVFDEK--IRLIQIAVENYPVIIYDMFNITKESILTGLREILKNEKVV 1367 Query: 68 CVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 + N F+ L +D +I + +L + + N + + L K + Sbjct: 1368 KIIQNGKFDAKFLMHNNFQVDNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQ 1427 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDGER 185 + + + +L E CK ++E ++ + ++P+ D E Sbjct: 1428 QNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICKENMETVNDIENKCILPICDMEL 1487 Query: 186 DLWLLDQTINDRGYRIDLDLVLK-LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 + G +DL+ + K E++++ + + +L D I + Q L+ Sbjct: 1488 N-----------GITVDLESLKKSTNEILSELNTETSKLKAELKDEEININSQQQVLKAL 1536 Query: 245 LF----LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 I+ + + S+ LK+ L+H + L L +L S+ L + ++ Sbjct: 1537 QNNNVRDISNKLIENTSDSNLKNFLNHKEVVLLRNYRRLYKLYSAF-----YLKLPQHIN 1591 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ T + +GR+S Q +PRQ Sbjct: 1592 KKTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ-------------------------- 1624 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I ++AD IE ++ A I +D +KA+ N D++ T + Sbjct: 1625 --KNIREIFIPQKDNIFIIADFKQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKK 1682 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQA 478 PI V+KE R I K + L Y K A+ Q S FE ++ Sbjct: 1683 PIADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHYKGI 1742 Query: 479 ESHHLWMQDQYP------------------EFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 H ++ A+ + GT +++K + ++ + + Sbjct: 1743 YRWHNQIKQIRGLEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLSLVELYKNLKPI 1802 Query: 521 W 521 Sbjct: 1803 H 1803 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDIVLTVHDE 631 Y + +++ K VQ DIL + KN I+L VHDE Sbjct: 1754 GLEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLSLVELYKNLKPIHGKIILCVHDE 1813 Query: 632 IVSETPDT-PYFSVGTLCSLM 651 I+ E ++ L M Sbjct: 1814 IIIEVDKKYQEDALKILVESM 1834 >gi|78184270|ref|YP_376705.1| DNA polymerase I [Synechococcus sp. CC9902] gi|78168564|gb|ABB25661.1| DNA polymerase A [Synechococcus sp. CC9902] Length = 998 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 110/627 (17%), Positives = 199/627 (31%), Gaps = 153/627 (24%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L N+ ++R++ + + + ++LA L++A Sbjct: 465 LASPQHPKALQNAKYDRLILLRH---GLTLNGVVIDTLLADY------LRDAAAKHGLD- 514 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ-AWQLFGE--------YCKRDVEATR 171 M E F + T + Q F + YC DV TR Sbjct: 515 ---LMSE-----REFG--------FRPTTYGDLVGKKQTFADVAIEPASLYCGMDVHVTR 558 Query: 172 ELF-----------KRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKK 219 L +L+PL + E+ L + + G RID+ + L + + + Sbjct: 559 RLALQLRQTLQAMGPQLLPLLEGVEQPLEPVLAQMEATGIRIDVPYLKTLSDELGSTLNR 618 Query: 220 LDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLIL 279 L+ D ++ + + L LF G+D + + +L D + Sbjct: 619 LETDAKQVAEVDFNLA-SPKQLGELLFDTLGLDRKKSRRTKTGFSTDATVLEKLENDHPV 677 Query: 280 NRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L + KL + L + V + GR+ + TGR S QN+P + Sbjct: 678 VPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGRLSSSNPNLQNIPVR 736 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 S +R + G L+ AD + IE R+L ++ Sbjct: 737 T------------------------EYSRRIRKAFLPQEGWTLLSADYSQIELRILTHLS 772 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS 453 GE+ +A++ G+D++ T + D VS ++R +GK + + Y GA+ F A Sbjct: 773 GEEVLQEAYSTGDDVHALTARLLLDK--DDVSADERRLGKTINFGVIYGMGAQRF---AR 827 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 G+ + + + ++Q + A+ + T Sbjct: 828 ETGVSSAEAKEFL------TKYKQRYPKVFAFLELQERLALSRGYVET------------ 869 Query: 514 HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLVYS 571 + RR + R + R K + I L +RR Sbjct: 870 -----------------------ILGRRRPFHFDRNGLGRLLGKDPLEIDLDVARR---- 902 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIV 625 +Q +R +Q S DI+ M ++ Sbjct: 903 ---------GGMEAQQLRAAANAP------IQGSSADIIKVAMVQLQAVLLSQGIPARLL 947 Query: 626 LTVHDEIVSET-PDTPYFSVGTLCSLM 651 L VHDE+V E PD + + + M Sbjct: 948 LQVHDELVLEVAPDALDTTRNLVVNTM 974 >gi|182683002|ref|YP_001834749.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] gi|182628336|gb|ACB89284.1| DNA polymerase I [Streptococcus pneumoniae CGSP14] Length = 889 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 466 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 525 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 526 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 584 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 585 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 641 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 642 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 679 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 680 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 739 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 740 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 799 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 800 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 851 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 852 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 889 >gi|291531643|emb|CBK97228.1| DNA polymerase I [Eubacterium siraeum 70/3] Length = 829 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 76/402 (18%), Positives = 140/402 (34%), Gaps = 68/402 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E L + + G ID D + + + ++ +K+ +I + + Sbjct: 429 LTDIEIPLATVLVAMEREGVSIDADGIKAFGKEVCEKAEKISREIYEYAGYEF-NIGSPK 487 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-----T 294 L LF + ++ + + L + L + A+ KL Sbjct: 488 QLGSVLFEKLALPSAKKTK--TGYSTNADVLESLMDKHPIVPLITEYRALTKLQNTYVTG 545 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + V DGR+ T + +RTGR S QN+P + Sbjct: 546 LLKVVGEDGRIHSTFK-QTETRTGRISSAEPNIQNIPVRT-------------------- 584 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R A +G LV AD + IE RVLA I+G++ KAF +G DI+ T + Sbjct: 585 ----PLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLDGVDIHTVTAS 640 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470 + FN PI+ V+ + R+ K + + Y GA K ++ + + Sbjct: 641 QVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIRSYLSKYSGIA 700 Query: 471 TFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACELVKKA 509 + + A++ + A + GTA +++K A Sbjct: 701 HYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQGTAADIIKIA 760 Query: 510 WRAKH----------QGVLQLWKDLTEGFACVVQEGGSISAR 541 + + +LQ+ +L E ++ + Sbjct: 761 MIKVYNRLEESGLDARLILQVHDELIVEAKEDCAEKVALLLK 802 Score = 54.7 bits (130), Expect = 4e-05, Method: Composition-based stats. Identities = 34/228 (14%), Positives = 78/228 (34%), Gaps = 35/228 (15%) Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 S ++Q + A+ +L + Y + ++ + E++KKA+ Sbjct: 571 SSAEPNIQNIPVRTPLGREMRRFFTAKDGYLLVDADYSQIELRVLAHISGDEIMKKAFLD 630 Query: 513 K------------HQGVLQLWKDLTEGFACV------------VQEGGSISARRVANVPR 548 +Q + + DL V + + +S + + R Sbjct: 631 GVDIHTVTASQVFNQPIEWVTPDLRSKAKAVNFGIVYGIGAFSLSKDIGVSVPKASEYIR 690 Query: 549 LVMRRHKR----DVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQ 603 + ++ V + R + G Y+ ++ + +G ++ +N +Q Sbjct: 691 SYLSKYSGIAHYMEQTVAKAKRDGYVETMFGRRRYIKELAAKNKNLQAFGERVAKNTPIQ 750 Query: 604 AISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVG 645 + DI+ M ++G D ++L VHDE++ E + V Sbjct: 751 GTAADIIKIAMIKVYNRLEESGLDARLILQVHDELIVEAKEDCAEKVA 798 >gi|329942446|ref|ZP_08291256.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|313847683|emb|CBY16671.1| putative DNA polymerase I [Chlamydophila psittaci RD1] gi|325506906|gb|ADZ18544.1| DNA polymerase I [Chlamydophila psittaci 6BC] gi|328815356|gb|EGF85344.1| DNA polymerase I family protein [Chlamydophila psittaci Cal10] gi|328914321|gb|AEB55154.1| DNA polymerase I [Chlamydophila psittaci 6BC] Length = 869 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 89/515 (17%), Positives = 167/515 (32%), Gaps = 68/515 (13%) Query: 28 AVITLCAYAWD-DEPVKLWDR--TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 +TL A DE V D + + + L + + + +N + K Sbjct: 324 PSLTLMGVALACDEQVYYVDIEHAQDDVI-TPLKDFFKRKDTEFYGYNIKRDHHALKNA- 381 Query: 85 GIDIPSKRWICTSVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 I LA G S + + E K GK I Sbjct: 382 --GIHIDNITLDLALAEHLINGGAKISYQTLLVDHGLMESAGKY--GKEWGQLSL--PIL 435 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 P A + + K+ + ++ + E L + TI G + Sbjct: 436 KSPAKP--AEYFGEFVSHLPKIKKSLLEELKIKGVEDLFFNMEMPLENVLFTIERNGMPL 493 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTL 261 D++ + +L+ +++E L +DI L + + L L+ G+ +D + T Sbjct: 494 DVEDLQELERTLSEELAILTDDIYTLAGASF-NIKSPKQLSDVLYNKLGLTPIDKARSTK 552 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L + IL A + L + R+ T G + TGR Sbjct: 553 AEVLEALLGEHEIVEKILAFRAIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRL 611 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVA 379 + QN+P + +R + A Sbjct: 612 ACQDPNLQNIPIRSER------------------------GRLLRKAFRDTRQNNYFLSA 647 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R LA ++ ++ AF + ED++ T ++ F+ P+++V+K+QR K + + Sbjct: 648 DYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGI 707 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES--------------- 480 Y G +K+ K S + + + + F D +++ Sbjct: 708 IYGQQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFIDETISQACENLRVKTLLGRERI 767 Query: 481 -----HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + AV ++ G+A EL+K A Sbjct: 768 IDNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAM 802 >gi|222098048|ref|YP_002532105.1| DNA polymerase i [Bacillus cereus Q1] gi|221242106|gb|ACM14816.1| DNA polymerase I [Bacillus cereus Q1] Length = 891 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 80/503 (15%), Positives = 170/503 (33%), Gaps = 82/503 (16%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 T+ + ++L D + ++ + K GID+ + ++A Sbjct: 363 TDSALKSDAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL---- 415 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L A +F + KM+E A+ K + RA V ++ E+ R V Sbjct: 416 -LDPADTDKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKV 466 Query: 168 EATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 ++ + + ++ E L + + +G ++D + + + E +A Sbjct: 467 HVLYDVKQTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRL 526 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 K+++++I KL + L + LF + ++ ++ + + ++ Sbjct: 527 KEMEQEIYKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEI 585 Query: 278 I---LNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 I L+ + L + V D ++ ++TGR S QN+P + Sbjct: 586 IPNILHYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR 644 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWI 392 +R + G + AD + IE RVLA I Sbjct: 645 ------------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHI 680 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 A + + AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 681 ANDKGLVDAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNL 740 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQD 487 ++++ ++ + D + S + ++ Sbjct: 741 GITRKAAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRS 800 Query: 488 QYPEFAVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 801 FAERTAMNTPIQGTAADIIKKAM 823 >gi|228477065|ref|ZP_04061703.1| DNA polymerase I [Streptococcus salivarius SK126] gi|228251084|gb|EEK10255.1| DNA polymerase I [Streptococcus salivarius SK126] Length = 879 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 81/521 (15%), Positives = 170/521 (32%), Gaps = 70/521 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW ++ +++ T+ + S+ Q + V F+R + LGID+P+ Sbjct: 337 IIGFAWGNDK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA+ L + + KG+ + P Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAVPEKEVLL 445 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +H+ + K+ + + L D E L + + G ++ + ++ Sbjct: 446 SHLAKKVKVLQVAKQVMLEKLAEHGQSELLFDMELPLANVLAKMEIAGIKVKGQTLNEMA 505 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 KL ++I ++ + L + LF G+ L + + + Sbjct: 506 VENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + DG++ ++TGR S Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRYV-QDLTQTGRLSSVDP 623 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P +R + S L+ +D + I Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTEDAVLLSSDYSQI 659 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442 E RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G + + + + + D Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDI 779 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + +++ A+ + G+A +++K A + +++ Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820 >gi|228917225|ref|ZP_04080782.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842426|gb|EEM87517.1| DNA polymerase I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 891 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|49187477|ref|YP_030729.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228935894|ref|ZP_04098704.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124153|ref|ZP_04253345.1| DNA polymerase I [Bacillus cereus 95/8201] gi|49181404|gb|AAT56780.1| DNA polymerase I [Bacillus anthracis str. Sterne] gi|228659455|gb|EEL15103.1| DNA polymerase I [Bacillus cereus 95/8201] gi|228823662|gb|EEM69484.1| DNA polymerase I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 891 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|145220238|ref|YP_001130947.1| DNA polymerase I [Prosthecochloris vibrioformis DSM 265] gi|145206402|gb|ABP37445.1| DNA polymerase I [Chlorobium phaeovibrioides DSM 265] Length = 940 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 92/549 (16%), Positives = 182/549 (33%), Gaps = 93/549 (16%) Query: 5 FIDIETRSPQPLPKV-----GVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 +D ET S L G+ A A + ++A + + + L Sbjct: 370 AVDTETTS---LKTCEAELAGISLSATPATASFISFARTG-------LSREKTI-ELLRP 418 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA---- 115 L + + N ++ ++ K G+++ + T + + ++ LA Sbjct: 419 LLENPAIAKTGQNLKYDLLVLKNY-GLELSPISF-DTMLASYLLNPETTHNLDDLAARHL 476 Query: 116 -LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATREL 173 L +++ GK + Y C A+ ++ + + + R + Sbjct: 477 KLRTTKYDELTGTGKTKLHIDDVEPRKLTDYACQDADIALRLTAILQKELAEEPNL-RHI 535 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L E L + + +G ID + E + + +L E I Sbjct: 536 GETL------EFPLISVLGAMESQGISIDTRHLAATSESVGTQLLQLKETIHSAAGESF- 588 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + L LF + G+ ++ + + + +LA + ++ K+ Sbjct: 589 NIDSPKQLSRILFEVLGLPTKKTTKTGFSTNVE--VLEELAPLHPVVGNLLEYRSLQKIK 646 Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + ++ GR+ + + + TGR S QN+P Sbjct: 647 TTYIDALPKMLNPRTGRVHTSFNQH-ITATGRLSSSNPNLQNIP---------------- 689 Query: 348 NRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 I PLG +R I ++ L+ AD + IE R+ A I+G+ I+AF N E Sbjct: 690 -----IRTPLG---REIRKAFIPTDPRNLLLSADYSQIELRIAAEISGDGKLIEAFRNRE 741 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T F+TP ++ + R K + + Y G +K S + + Sbjct: 742 DIHSATARVIFDTP--DITPDMRRKAKEVNFGVLYGIQPFGLSKRLNIPRSEAADIISTY 799 Query: 463 SQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGT 501 + D S + +Q A+ + GT Sbjct: 800 TAKYPGLFEALDTIKTTGREKGFVTTLLGRRRYLPNLSSRNGNLQKAAERAAMNTPIQGT 859 Query: 502 ACELVKKAW 510 A +++K A Sbjct: 860 AADIIKCAM 868 >gi|30022662|ref|NP_834293.1| DNA polymerase I [Bacillus cereus ATCC 14579] gi|29898220|gb|AAP11494.1| DNA polymerase I [Bacillus cereus ATCC 14579] Length = 891 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 83/492 (16%), Positives = 163/492 (33%), Gaps = 74/492 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + + A + K+ C Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF-DLLIAAYLLDPADTDKDFCT 427 Query: 115 ALNFSEH--LTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDVEAT 170 E + EE A+ + R HV Q F E K++ Sbjct: 428 VAKMKETHAVKSDEEVYGKGAKRAVPELKVVAEHVARKVHVLYDVKQTFVEELKKN--EQ 485 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ELF L E L + + +G ++D + + + E +A K+++++I KL Sbjct: 486 YELFTEL------ELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAGT 539 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASS 285 + L + LF + ++ ++ S + +L IL+ Sbjct: 540 EF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNILHYRQLG 596 Query: 286 GSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + V D ++ ++TGR S QN+P + Sbjct: 597 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 644 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + G + AD + IE RVLA IA + ++AF Sbjct: 645 -------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLVEAFQ 691 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 + DI+ T F D+V+ R K + + Y G ++ + Sbjct: 692 HDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFI 751 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ ++ + + + S + ++ A+ + Sbjct: 752 EKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 811 Query: 499 IGTACELVKKAW 510 GTA +++KKA Sbjct: 812 QGTAADIIKKAM 823 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|303232052|ref|ZP_07318755.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] gi|302513158|gb|EFL55197.1| DNA-directed DNA polymerase [Veillonella atypica ACS-049-V-Sch6] Length = 884 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 71/437 (16%), Positives = 143/437 (32%), Gaps = 62/437 (14%) Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + S ++ + S P T + V+ + D A Sbjct: 410 NGVARIHDVSLMAYLLDPTRTNYGYLYLTERFSVPSIATGSVDVECVSMVKALLAMDDAA 469 Query: 170 TRELF-KRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + L + L L ++ E L + G ID + + E + + ++I +L Sbjct: 470 VKALQDESLWDLYNNIELPLIHTLLVMEKNGIYIDPVKLEETTIKFKAELEAVQQEIYEL 529 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF + ++ ++ + L + + + Sbjct: 530 AGETF-NINSPKQLGIILFEKMNLPVIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYR 586 Query: 288 AILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ KL L+ ++ + R+ T + TGR S QN+P + Sbjct: 587 SVAKLVSTYCEGLAVLINPETHRIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK----- 640 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400 +R+ G LV AD + IE R+LA ++G++ IK Sbjct: 641 -------------------GREIRALFYPGEGFDTLVSADYSQIELRILAHLSGDEALIK 681 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +G+DI+ T A+ D+V+ E+R+ K + + Y G ++ Sbjct: 682 AFNDGKDIHRFTAAEVLGKSQDEVTSEERSHAKAVNFGIIYGISDFGLSRDLGITRQEAK 741 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 ++ + + D E+H + + A+ Sbjct: 742 NYIELYFSRYPKVKEYMDNMVTEAHETGKVRTMFGRMRELPDINSRNFNRRSFAERTAMN 801 Query: 496 DKLIGTACELVKKAWRA 512 + GTA +++K A Sbjct: 802 TPIQGTAADIIKLAMNK 818 >gi|228993314|ref|ZP_04153230.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] gi|228766382|gb|EEM15025.1| DNA polymerase I [Bacillus pseudomycoides DSM 12442] Length = 877 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 83/492 (16%), Positives = 174/492 (35%), Gaps = 74/492 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D+ + ++ + K GI+I + ++A P+ Sbjct: 356 EAFKKWLADDEMRKYTFDAKRAIVALK-WKGIEIQGIDF--DLLIAAYLLDPADTDKDFR 412 Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEAT 170 A + KM+E A+ + KG+ + P A HV + + + K VE Sbjct: 413 A------VAKMKETHAVKSDEEVYGKGAKRAVPAQDIVAEHVARKVHVLYDVQKTFVE-E 465 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + ++ ++ E L + + +G +D + + + + +A K+++++I +L Sbjct: 466 LQKNEQYELFTELEMPLARVLAEMEVKGVTVDTERLRSMGDELAGRLKEMEQEIYELAGT 525 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ ++ S + +L + + + Sbjct: 526 EF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMEHHEIIPKILHYRQLG 582 Query: 291 KLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KLN+ L + V D ++ ++TGR S QN+P + Sbjct: 583 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 630 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I S G + AD + IE RVLA IA + ++AF Sbjct: 631 -------------LEEGRKIRQAFIPSKEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQ 677 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 + DI+ T F D+V+ R K + + Y G ++ G + Sbjct: 678 HDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFI 737 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + S + ++ A+ + Sbjct: 738 EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 797 Query: 499 IGTACELVKKAW 510 G+A +++KKA Sbjct: 798 QGSAADIIKKAM 809 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + G ++L VHDE++ E P + L +M Sbjct: 797 IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA 856 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 857 IELA--VPLKVD 866 >gi|167768074|ref|ZP_02440127.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] gi|167710403|gb|EDS20982.1| hypothetical protein CLOSS21_02619 [Clostridium sp. SS2/1] Length = 909 Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats. Identities = 65/411 (15%), Positives = 137/411 (33%), Gaps = 73/411 (17%) Query: 174 FKRLIPLSDGERDLWLLD-------------QTINDRGYRIDLDLVLKLQELIAQERKKL 220 + + PLSD +L ++D + RG +D + + + ++L Sbjct: 490 REAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKGYGDQLVGRIEEL 549 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 E I K + L + LF ++ ++ + + + ++ + Sbjct: 550 QESIYKEAGEEF-NINSPKQLGVVLFDHMKLEGAKKTKTGYSTSVE--VLEKIEHLYPII 606 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L+ + D R+ G + TGR S QN+P + Sbjct: 607 PMILEYRQLTKLKSTYADGLANFIQDDQRIHGKFN-QTITATGRISSTEPNLQNIPIR-- 663 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R + G + AD + IE RVLA ++ + Sbjct: 664 ----------------------MELGRAIRKVFLPEEGYIFLDADYSQIELRVLAHLSQD 701 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 + I A+ +DI+ T ++ F P+D+V+ QR K + + Y G ++ K Sbjct: 702 EKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKIS 761 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 + ++ F D + +S + ++ Sbjct: 762 RKQAQEYIDRYFAMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGE 821 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K A + + + K + + + I Sbjct: 822 RVAMNSPIQGTAADIIKIAMVRVNMKLKE--KQMKSRLLLQIHDELLIETH 870 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 9/71 (12%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R +G ++ N +Q + DI+ M ++L +HDE++ ET + Sbjct: 816 QRNFGERVAMNSPIQGTAADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFE 875 Query: 643 SVGTL--CSLM 651 V + +M Sbjct: 876 EVKEILQNEMM 886 >gi|228948311|ref|ZP_04110594.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811298|gb|EEM57636.1| DNA polymerase I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 891 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|49481342|ref|YP_038632.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|229093683|ref|ZP_04224782.1| DNA polymerase I [Bacillus cereus Rock3-42] gi|49332898|gb|AAT63544.1| DNA polymerase I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|228689568|gb|EEL43376.1| DNA polymerase I [Bacillus cereus Rock3-42] Length = 891 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|303235252|ref|ZP_07321870.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] gi|302493566|gb|EFL53354.1| DNA-directed DNA polymerase [Finegoldia magna BVS033A4] Length = 875 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 94/546 (17%), Positives = 189/546 (34%), Gaps = 82/546 (15%) Query: 28 AVITLCA--YAWDDEPVKLWDRTEQSAMPS--DLLQYLRDETVMCVAHNSLFE-RILFKK 82 L Y D+EPV T++ + DL++ ++E + F+ + Sbjct: 319 FTFALFNDDYYVDNEPVIFAIYTDKVYITRNVDLVESFKEEFESKDINKLSFDIKPCIYH 378 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCK 137 + I V+ PS ++ + + + GK + Sbjct: 379 LMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKPLEDITGKGKSKKTIL 438 Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTIND 196 S + N++ + +F + E E L D E L + + Sbjct: 439 ESDEKEI-----DNYIVKYMMFTNKLYEKISEIEEEDMMHLY--RDVEIPLIKVLCDMEF 491 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G + + ++++ EL E K +++ + +L I + + L LF + ++ Sbjct: 492 TGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPVIKK 550 Query: 257 SE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYG 313 ++ T + +L + D IL + ++ + + + DG++ T Q Sbjct: 551 NKTGPSTDQEVLEALSGRHEIIDYILRYRTITKLKTTYIDGMVDLIKKDGKIHTTFQQTI 610 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG 373 A +TGR S QN+P + +R + S G Sbjct: 611 A-QTGRISSTNPNLQNIPIRT------------------------EEGRLIRKAFVPSGG 645 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ AD + IE RVLA +A ++ I AF +G DI+ T ++ F DKV+ QR+ K Sbjct: 646 NVLLDADYSQIELRVLADLANDEVMIDAFKHGADIHRKTASEVFKVDFDKVTSLQRSNAK 705 Query: 434 VMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------- 474 + + Y G +K ++ + K + + Sbjct: 706 AVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETI 765 Query: 475 ------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518 + +S + ++ A+ + G+A +++K A K + +L Sbjct: 766 MNRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLIL 825 Query: 519 QLWKDL 524 Q+ +L Sbjct: 826 QVHDEL 831 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 11/134 (8%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + + + + + V I + + Y+ S+ Sbjct: 726 ITRKEAKEYIENYLDTYKGIKQYMEDIVAIGKEKGYVETIMNRR---RYIPELKSKNYNV 782 Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M N K ++L VHDE++ + P Sbjct: 783 RSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEEKLKAKLILQVHDELIVDCPKDEREK 842 Query: 644 VGTLCS-LMTKNPS 656 V + +MT Sbjct: 843 VLEIMKDVMTHAVD 856 >gi|307066713|ref|YP_003875679.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] gi|306408250|gb|ADM83677.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pneumoniae AP200] Length = 889 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 466 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 525 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 526 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 584 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 585 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 641 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 642 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 679 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 680 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 739 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 740 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 799 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 800 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 851 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 852 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 889 >gi|196040840|ref|ZP_03108138.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] gi|196028294|gb|EDX66903.1| DNA-directed DNA polymerase [Bacillus cereus NVH0597-99] Length = 877 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 >gi|52140922|ref|YP_085907.1| DNA polymerase I [Bacillus cereus E33L] gi|51974391|gb|AAU15941.1| DNA polymerase I [Bacillus cereus E33L] Length = 891 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|228987834|ref|ZP_04147943.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771882|gb|EEM20339.1| DNA polymerase I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 891 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 80/496 (16%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GIDI + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDIQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|229141312|ref|ZP_04269850.1| DNA polymerase I [Bacillus cereus BDRD-ST26] gi|228642093|gb|EEK98386.1| DNA polymerase I [Bacillus cereus BDRD-ST26] Length = 891 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|30264657|ref|NP_847034.1| DNA polymerase I [Bacillus anthracis str. Ames] gi|47778333|ref|YP_021476.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|65321954|ref|ZP_00394913.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Bacillus anthracis str. A2012] gi|167633873|ref|ZP_02392196.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|167638243|ref|ZP_02396521.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|170685807|ref|ZP_02877030.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|170705559|ref|ZP_02896023.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|177651090|ref|ZP_02933921.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190569033|ref|ZP_03021933.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|196032762|ref|ZP_03100175.1| DNA polymerase I [Bacillus cereus W] gi|218905814|ref|YP_002453648.1| DNA polymerase I [Bacillus cereus AH820] gi|227817371|ref|YP_002817380.1| DNA polymerase I [Bacillus anthracis str. CDC 684] gi|229603367|ref|YP_002868866.1| DNA polymerase I [Bacillus anthracis str. A0248] gi|254687394|ref|ZP_05151250.1| DNA polymerase I [Bacillus anthracis str. CNEVA-9066] gi|254724957|ref|ZP_05186740.1| DNA polymerase I [Bacillus anthracis str. A1055] gi|254736694|ref|ZP_05194400.1| DNA polymerase I [Bacillus anthracis str. Western North America USA6153] gi|254741731|ref|ZP_05199418.1| DNA polymerase I [Bacillus anthracis str. Kruger B] gi|254757503|ref|ZP_05209530.1| DNA polymerase I [Bacillus anthracis str. Australia 94] gi|30259332|gb|AAP28520.1| DNA-directed DNA polymerase [Bacillus anthracis str. Ames] gi|47552038|gb|AAT33951.2| DNA polymerase I [Bacillus anthracis str. 'Ames Ancestor'] gi|167514060|gb|EDR89428.1| DNA polymerase I [Bacillus anthracis str. A0193] gi|167530674|gb|EDR93376.1| DNA polymerase I [Bacillus anthracis str. A0442] gi|170129684|gb|EDS98547.1| DNA polymerase I [Bacillus anthracis str. A0389] gi|170670271|gb|EDT21011.1| DNA polymerase I [Bacillus anthracis str. A0465] gi|172082916|gb|EDT67978.1| DNA polymerase I [Bacillus anthracis str. A0174] gi|190559815|gb|EDV13800.1| DNA polymerase I [Bacillus anthracis Tsiankovskii-I] gi|195994191|gb|EDX58146.1| DNA polymerase I [Bacillus cereus W] gi|218539736|gb|ACK92134.1| DNA polymerase I [Bacillus cereus AH820] gi|227005090|gb|ACP14833.1| DNA-directed DNA polymerase [Bacillus anthracis str. CDC 684] gi|229267775|gb|ACQ49412.1| DNA polymerase I [Bacillus anthracis str. A0248] Length = 877 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 >gi|301056092|ref|YP_003794303.1| DNA polymerase I [Bacillus anthracis CI] gi|300378261|gb|ADK07165.1| DNA polymerase I [Bacillus cereus biovar anthracis str. CI] Length = 877 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 >gi|325283273|ref|YP_004255814.1| DNA polymerase I [Deinococcus proteolyticus MRP] gi|324315082|gb|ADY26197.1| DNA polymerase I [Deinococcus proteolyticus MRP] Length = 897 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 77/409 (18%), Positives = 140/409 (34%), Gaps = 65/409 (15%) Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 RL ++ E+ L + + RG R+D + + L +A+ ++L+ I + S Sbjct: 492 RLKLYTEVEKPLSGVLARMEARGVRLDSEYLQGLSLALAERLERLEAQIHEAAGREF-SI 550 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL--- 292 R L L+ G+ ++ T K + + + L + + L + KL Sbjct: 551 RSRDQLEAVLYDELGLASGKKTKLTGKRSTAMTALEPLRDEHPIIPLILEYRELEKLRGT 610 Query: 293 --NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L V+ GRL T A TGR S QN+P + Sbjct: 611 YLDPLPRLVNPRTGRLHTTFA-QTAVATGRLSSLNPNLQNIPIRS--------------- 654 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R IA G +LV AD + +E R++A IAG++ +AF G DI+ Sbjct: 655 ---------EEGRQIRKGFIADGGFRLVAADYSQLELRLMAHIAGDEPMQRAFQEGADIH 705 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQN 465 T A+ V QR K + + Y A + ++ + Sbjct: 706 RRTAAQVLGLDESTVDVNQRRAAKTVNFGVLYGMSAHRLSNELGIPYAEATSFIENYFGI 765 Query: 466 VKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + + ++ + +++ A + GTA + Sbjct: 766 YPGIQRYIEETLEFGRQHGYVETLYGRRRYVPELKARNRNLREAGERLAYNMPIQGTAAD 825 Query: 505 LVKKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 ++K A A +LQ+ +L E + R+V Sbjct: 826 IMKMAMVALEPQLDALGARMLLQVHDELLIEAPADRAEEVAALTRQVME 874 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 40/234 (17%), Positives = 76/234 (32%), Gaps = 24/234 (10%) Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 S+E R I K GG F+ +A+ + ++ + + Sbjct: 654 SEEGRQIRK----GFIADGG---FRLVAADYSQLELRLMAHIAGDEPMQR-----AFQEG 701 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVA 544 A L + ++ ++ RA + + + E G A + Sbjct: 702 ADIHRRTAAQVLGLDESTVDVNQR--RAAKTVNFGVLYGM--SAHRLSNELGIPYAEATS 757 Query: 545 NVPR--LVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI 601 + + +R + L R+ Y + G Y+ ++ R G +L N+ Sbjct: 758 FIENYFGIYPGIQRYIEETLEFGRQHGYVETLYGRRRYVPELKARNRNLREAGERLAYNM 817 Query: 602 -VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 +Q + DI+ M G ++L VHDE++ E P V L Sbjct: 818 PIQGTAADIMKMAMVALEPQLDALGARMLLQVHDELLIEAPADRAEEVAALTRQ 871 >gi|47564997|ref|ZP_00236040.1| DNA polymerase I [Bacillus cereus G9241] gi|47557783|gb|EAL16108.1| DNA polymerase I [Bacillus cereus G9241] Length = 891 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 80/496 (16%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GIDI + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDIQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|118479734|ref|YP_896885.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|229186842|ref|ZP_04313997.1| DNA polymerase I [Bacillus cereus BGSC 6E1] gi|118418959|gb|ABK87378.1| DNA polymerase I [Bacillus thuringiensis str. Al Hakam] gi|228596579|gb|EEK54244.1| DNA polymerase I [Bacillus cereus BGSC 6E1] Length = 891 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|229158189|ref|ZP_04286256.1| DNA polymerase I [Bacillus cereus ATCC 4342] gi|228625147|gb|EEK81907.1| DNA polymerase I [Bacillus cereus ATCC 4342] Length = 891 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 80/496 (16%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GIDI + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDIQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|165869628|ref|ZP_02214286.1| DNA polymerase I [Bacillus anthracis str. A0488] gi|254754671|ref|ZP_05206706.1| DNA polymerase I [Bacillus anthracis str. Vollum] gi|164714457|gb|EDR19976.1| DNA polymerase I [Bacillus anthracis str. A0488] Length = 877 Score = 228 bits (581), Expect = 2e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 >gi|319744359|gb|EFV96719.1| DNA-directed DNA polymerase I [Streptococcus agalactiae ATCC 13813] Length = 880 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 72/518 (13%), Positives = 162/518 (31%), Gaps = 72/518 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 L AW + T ++ + + L + ++ ++L + +I Sbjct: 338 LIGIAWGNSD--TIYATSDVSLLQEALFKKALSKP--IKT-YDFKRSKVLLNRF---NID 389 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + LA+ + +L + + KG+ + P Sbjct: 390 LPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAV----YGKGAKRAIPEKTRF 445 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 +H+ + ++ ++ ++ L + E+ L + + RG ++ + + ++ Sbjct: 446 LDHLAKKVKVLVDSEANIMQQLKVNEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEM 505 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 + + L ++I +L + L LF G+ + + + Sbjct: 506 AIENQKVIETLTQEIYELAGQEF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDV 564 Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA L I KL + L + + DG++ ++TGR S Sbjct: 565 LERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSSSD 623 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +R + S L+ +D + Sbjct: 624 PNLQNIP------------------------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQ 659 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+ ++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 660 IELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYG 719 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQ 477 G + + + + + + Sbjct: 720 ISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPD 779 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 S + ++ A+ + G+A +++K A + Sbjct: 780 INSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817 >gi|38146973|gb|AAR11871.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus] Length = 849 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 65/381 (17%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G+++D + + + + I + KL+ I ++ + L Sbjct: 451 IEMPLVPILYEMEKIGFKVDKNTLQEYTKEIESKLLKLESQIYQIAGEWF-NINSPKQLS 509 Query: 243 MYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 LF + +V ++ T +L LIL+ + L +A+ Sbjct: 510 YILFEKLKLPVVKKTKTGYSTDAEVLEELYDKHDIIPLILDYRMYTKILTTYCQGLVQAI 569 Query: 300 SS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + GR+ G + TGR + QN+P + Sbjct: 570 NPVTGRIHTNFIQTG-TATGRLASAEPNLQNIPVKY------------------------ 604 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ F Sbjct: 605 DEGKLIRKAFVPDEGYMLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAEIFG 664 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 I +V+ R+ K + + Y G ++ K + ++ + + D Sbjct: 665 VDISQVTPIMRSQAKAVNFGIVYGISDYGLSRDIKISRKEAAEFINRYFEKYPKVKEYLD 724 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA- 512 + +S + +++ A+ + G+A +++K A Sbjct: 725 NVVKFARENGFVLTIFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAMIRV 784 Query: 513 ---------KHQGVLQLWKDL 524 K + +LQ+ +L Sbjct: 785 YKKLKENNLKSRIILQVHDEL 805 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 41/127 (32%), Gaps = 10/127 (7%) Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + ++ + R V V + L + K Y+ S Sbjct: 699 KISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTIFNRK---RYIKDIKSTNKN 755 Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 R Y ++ N +Q + DI+ M K I+L VHDE++ E+P Sbjct: 756 LRNYAERIAMNSPIQGSAADIMKIAMIRVYKKLKENNLKSRIILQVHDELLIESPYEEKE 815 Query: 643 SVGTLCS 649 V + Sbjct: 816 IVKEIVK 822 >gi|323698562|ref|ZP_08110474.1| DNA polymerase I [Desulfovibrio sp. ND132] gi|323458494|gb|EGB14359.1| DNA polymerase I [Desulfovibrio desulfuricans ND132] Length = 888 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 90/497 (18%), Positives = 152/497 (30%), Gaps = 120/497 (24%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G ID + + +L I+ + R + L Sbjct: 489 ELEIPLIPVLVAMERAGISIDDAAFQAFLNDVNAQLDELTRSIIGYAGEEF-NIRSSQQL 547 Query: 242 RMYLFLITGIDLVDMS----EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 + LF GI + T +L D +L L L + Sbjct: 548 AVVLFDQLGIKAGSKTSTGLRSTANQVLEKIRDQHPIVDAVLEFRMLEKLRSTYLEPLPK 607 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V DGRL ++ TGR S QN+P + Sbjct: 608 MVGEDGRLHTHFNQL-STATGRLSSSQPNLQNIPIR------------------------ 642 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 G+ +R+C A+ G L AD + IE RVLA + + I AF + EDI+ T A Sbjct: 643 GVHGPRMRACFNAAEGNMLAAADYSQIELRVLAHFSKDPELIDAFRHDEDIHARTAALIH 702 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 + I V+ ++R K + L Y G + +A + + + + F Sbjct: 703 DKDISAVTPDERRGAKTINFGLIYGMGVQ---KLARELQIKQTEAQEFTE--KYFAKMAT 757 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 ++++ + L G +L +L Sbjct: 758 LKAYYDTVVKDAETHGFVTTLA----------------GRRRLLPEL------------- 788 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 H R+ + + R+ Sbjct: 789 ----------------HSRNNQLSAQARRQA----------------------------- 803 Query: 598 TENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650 ++Q + DI+ M K + G ++L VHDE++ E P+ G L + Sbjct: 804 VNTVIQGSAADIIKMAMVQAHKDKRLRELGAQLILQVHDELIIEAPEANIKEAGGRLLEI 863 Query: 651 MTKNPSWAK-GLPLKAE 666 M AK +PLK + Sbjct: 864 MQTV---AKLDVPLKVD 877 >gi|257791761|ref|YP_003182367.1| DNA polymerase I [Eggerthella lenta DSM 2243] gi|257475658|gb|ACV55978.1| DNA polymerase I [Eggerthella lenta DSM 2243] Length = 875 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 65/391 (16%), Positives = 134/391 (34%), Gaps = 65/391 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D + L + + G +D D + +L E +L I+++ + L Sbjct: 476 DIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEF-NLDSPKQL 534 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 LF + G+ + + + + +L+ D L L + K+ + L Sbjct: 535 AHILFEVLGLRT--LRKNQRGYSTDAAVLKELSNDHELPALVLRYRELAKIKSTYIDALP 592 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ + + TGR S QN+P + Sbjct: 593 RMRADDGRVHTSFN-ETVTTTGRLSSSEPNLQNIPVRT---------------------- 629 Query: 357 LGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R C + G + AD + IE R+LA ++ ++ + AF +G D + T ++ Sbjct: 630 --EFGRQIRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASR 687 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F P++ VS E R+ K + + Y G ++ ++++ + Sbjct: 688 VFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRA 747 Query: 472 FEDWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTACELVKKAW 510 + D AE+ + A+ + G+A +++K A Sbjct: 748 YLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAM 807 Query: 511 RAKHQGVL------QLWKDLTEGFACVVQEG 535 + ++ +L + + V EG Sbjct: 808 TEVQRRIMERGFEAKLLLQVHDELDFSVPEG 838 >gi|303254143|ref|ZP_07340257.1| DNA polymerase I [Streptococcus pneumoniae BS455] gi|302598897|gb|EFL65929.1| DNA polymerase I [Streptococcus pneumoniae BS455] Length = 870 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 447 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 506 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 507 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 565 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 566 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 622 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 623 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 660 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 661 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 720 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 721 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 780 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 781 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 832 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 833 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 870 >gi|206977131|ref|ZP_03238030.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217962066|ref|YP_002340636.1| DNA polymerase I [Bacillus cereus AH187] gi|206744616|gb|EDZ56024.1| DNA polymerase I [Bacillus cereus H3081.97] gi|217064111|gb|ACJ78361.1| DNA polymerase I [Bacillus cereus AH187] Length = 877 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 >gi|72382587|ref|YP_291942.1| DNA polymerase I [Prochlorococcus marinus str. NATL2A] gi|72002437|gb|AAZ58239.1| DNA polymerase A [Prochlorococcus marinus str. NATL2A] Length = 986 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 114/694 (16%), Positives = 213/694 (30%), Gaps = 160/694 (23%) Query: 2 SKLFIDIETRSPQPLPK--VGV-WAYAEQAV---ITLCAYAWDDEPVKLWDRTEQSAMPS 55 + ID ET S P VG+ + + E + + + ++ Q + Sbjct: 385 KPIAIDTETTSLNPFKAELVGLGFCFGESLKDIVYIPIGHQNKEGDLIKINQINQLKI-E 443 Query: 56 DLLQYLRD----ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKN 111 +++ L+D N+ ++R++ + I + ++LA ++LK+ Sbjct: 444 EVIFALQDWFSSNENHKTLQNAKYDRLILLRH---GIILNGVVIDTLLADYI-FDATLKH 499 Query: 112 ACLALNFSEHLTKMEEGKALIAR---FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 + + + E K + ++ + F I S YC DV Sbjct: 500 SLDEIAYREFGFKPKSFSDVVKKGEDFSYVDIKSA----------------SMYCGMDVY 543 Query: 169 ATRELF------------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 TR+L K + L + E+ L + I G ID + L + ++ Sbjct: 544 LTRKLAIIYINRLKETSTKLINLLKEVEQPLEQVLAEIESTGIIIDTPYLKDLSLELTKK 603 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 +++++ + S L LF +D + + + +L D Sbjct: 604 LNTIEKEVYNIAGSEFNLS-SPKQLGELLFEKLDLDRKKSRKTKTGWSTDVAVLEKLESD 662 Query: 277 LILNRLASSGSAILKL-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + ++ I KL + L + + GR+ + TGR S QN+ Sbjct: 663 HPIVKMIIEHRTISKLLNTYVDALPKLIEKETGRVHTDFN-QAVTATGRLSSSNPNLQNI 721 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLA 390 P + S +R + KL+ AD + IE R+L Sbjct: 722 PVRT------------------------EFSRRIRKAFLPQKDWKLLSADYSQIELRILT 757 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKT 450 ++GE+ A+ ED++ T F D + ++R IGK + + Y GA+ F Sbjct: 758 HLSGEEVLKNAYLKNEDVHSLTAKLLFEK--DAIDADERRIGKTINFGVIYGMGAQRFAR 815 Query: 451 MAS----HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 L +F + + F + A+ + T Sbjct: 816 STGVSLIEAKYFLSKFKERYPAVFNFLE-------------YQERLALSQGFVETLL--- 859 Query: 507 KKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 R +K + R Sbjct: 860 ---------------------------------------GRRRYFHFNKNGL------GR 874 Query: 567 RLVYSDVKGDCSYLNTA--TSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---- 620 L + D + A +Q +R +Q S DI+ M Sbjct: 875 LLGTPPNEIDLTTARRAGMEAQQLRAAANAP------IQGSSADIIKLAMIQLHSALRET 928 Query: 621 --GYDIVLTVHDEIVSET-PDTPYFSVGTLCSLM 651 I+L VHDE+V E P + + + M Sbjct: 929 GLAAKILLQVHDELVLEVNPKDLEETKLLVKNTM 962 >gi|319945840|ref|ZP_08020090.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] gi|319747905|gb|EFW00149.1| DNA-directed DNA polymerase I [Streptococcus australis ATCC 700641] Length = 881 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 133/414 (32%), Gaps = 58/414 (14%) Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + KG+ P H+ + + + +L L D E+ L + + Sbjct: 432 YGKGAKKIIPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +++ + +Q ++L ++I +L + L + LF + L Sbjct: 492 EIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLELPLE 550 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 + + + +LA + I K+ + L + + DG++ Sbjct: 551 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRY 610 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P +R + Sbjct: 611 V-QDLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFV 645 Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN + V+ Sbjct: 646 PEEVNSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPN 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473 R K + + Y G + ++ + + + Sbjct: 706 DRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDK 765 Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + S + ++ A+ + G+A +++K A Q Sbjct: 766 GYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQA 819 Score = 45.9 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M + Y +L VHDEIV + P ++ L M Sbjct: 801 IQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVPTDELAAIKALVKETMESA 860 Query: 655 PSWAKGLPLKAE 666 A +PL+A+ Sbjct: 861 IELA--VPLEAD 870 >gi|303260668|ref|ZP_07346631.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|303263159|ref|ZP_07349082.1| DNA polymerase I [Streptococcus pneumoniae BS397] gi|303269472|ref|ZP_07355239.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302638198|gb|EFL68670.1| DNA polymerase I [Streptococcus pneumoniae SP-BS293] gi|302641006|gb|EFL71386.1| DNA polymerase I [Streptococcus pneumoniae BS458] gi|302646932|gb|EFL77156.1| DNA polymerase I [Streptococcus pneumoniae BS397] Length = 877 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|312863577|ref|ZP_07723815.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322516028|ref|ZP_08068965.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] gi|311101113|gb|EFQ59318.1| DNA-directed DNA polymerase [Streptococcus vestibularis F0396] gi|322125443|gb|EFX96789.1| DNA-directed DNA polymerase I [Streptococcus vestibularis ATCC 49124] Length = 879 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 82/521 (15%), Positives = 169/521 (32%), Gaps = 70/521 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW +E +++ T+ + S+ Q + V F+R + LGID+P+ Sbjct: 337 IIGFAWGNEK-QIYASTDTDLLKSEAFQAALSKAVNIY----DFKRSKVLLSHLGIDLPT 391 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA+ L + + KG+ + P Sbjct: 392 ANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKGAKRAVPEKEVLL 445 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +H+ + K + + L D E L + + G ++ + ++ Sbjct: 446 SHLAKKVKVLQVAKPVMLEKLAEHGQSELLFDMELPLANVLAKMEIAGIKVKGQTLNEMA 505 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 KL ++I ++ + L + LF G+ L + + + Sbjct: 506 VENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFEKMGLPLEYTKKTKTGYSTAVDVL 564 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + DG++ ++TGR S Sbjct: 565 ERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRYV-QDLTQTGRLSSVDP 623 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P +R + S L+ +D + I Sbjct: 624 NLQNIP------------------------VRLEQGRLIRKAFVPSTEDAVLLSSDYSQI 659 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442 E RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 660 ELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 719 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G + + + + + D Sbjct: 720 SDFGLSNNLGISRKKAKEYIDTYFERYPGIKAYMDNVVREAKDKGYVETLFHRRRELPDI 779 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + +++ A+ + G+A +++K A + +++ Sbjct: 780 NSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820 >gi|324328479|gb|ADY23739.1| DNA polymerase I [Bacillus thuringiensis serovar finitimus YBT-020] Length = 877 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 >gi|196047493|ref|ZP_03114704.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225866564|ref|YP_002751942.1| DNA polymerase I [Bacillus cereus 03BB102] gi|196021708|gb|EDX60404.1| DNA polymerase I [Bacillus cereus 03BB108] gi|225785727|gb|ACO25944.1| DNA-directed DNA polymerase [Bacillus cereus 03BB102] Length = 877 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFKHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 >gi|283853836|ref|ZP_06371055.1| DNA polymerase I [Desulfovibrio sp. FW1012B] gi|283570771|gb|EFC18812.1| DNA polymerase I [Desulfovibrio sp. FW1012B] Length = 878 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 92/486 (18%), Positives = 156/486 (32%), Gaps = 120/486 (24%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 ++ G ID + +A E +L+ I +L + R + L L+ G+ Sbjct: 490 SMERIGIGIDTAALAAFGAEVATELARLEGAIRELAGEGF-NPRSSRQLGEVLYGRMGLK 548 Query: 253 LVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 + G T + L D IL L+ L + GR+ T Sbjct: 549 PRGKTPGGAASTSQEALERLAGENPLVDRILEFRKLEKLRSTYLDPLPRLADAAGRIHTT 608 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A+ TGR S QN+P + G +R C Sbjct: 609 FNNL-ATATGRLSSSNPNLQNIPIR------------------------GTLGRRMRECF 643 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +A+ GKKLV AD + IE RVLA ++GE + AF G DI+ T A F+ + ++ Sbjct: 644 VAAAGKKLVAADYSQIELRVLAHLSGEPALLAAFEQGADIHARTAAILFDKAEADIRPDE 703 Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488 R K + L Y G + ++ G+ L +++ Sbjct: 704 RRQAKTINFGLLYGMGPQ---KLSRDLGIKLDAAKA-------------------FIEKY 741 Query: 489 YPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + + G + + G +L ++ Sbjct: 742 FERLSGLSTFYQGIVDTAKAQGFVTTLAGRRRLLPEI----------------------- 778 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 H + + + R+ + +VQ + Sbjct: 779 ------HSANSQLASQARRQAI-----------------------------NTVVQGGAA 803 Query: 608 DILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV-GTLCSLMTKNPSWAKG 660 DI+ M A + G +VL VHDE++ ETP+ + L +LM + A Sbjct: 804 DIIKMAMLAAHNDPELAGLGAAMVLQVHDELLLETPEAAAQAAGERLSALMCGVVALA-- 861 Query: 661 LPLKAE 666 +PL + Sbjct: 862 VPLAVD 867 >gi|78045179|ref|YP_360471.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] gi|77997294|gb|ABB16193.1| DNA polymerase I [Carboxydothermus hydrogenoformans Z-2901] Length = 831 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 67/371 (18%), Positives = 133/371 (35%), Gaps = 62/371 (16%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +RL + E L + + G ++D + + ++ + ++ ++L +I L Sbjct: 425 QERLF--YEIELPLTPVLAQMEHTGIQVDREALKEMSLELGEQIEELIREIYVLAGEEF- 481 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + L + LF G+ ++ ++ + +L + + ++KL Sbjct: 482 NLNSPRQLGVILFEKLGLPVIKKTKTG--YSTDAEVLEELLPFHEIIGKILNYRQLMKLK 539 Query: 293 ----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L ++ G+L T G + TGR + QN+P + Sbjct: 540 STYTDGLMPLINERTGKLHTTFNQTG-TLTGRLASSEPNLQNIPIR-------------- 584 Query: 348 NRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I S G +V AD + IE R+LA + E I+A+ GE Sbjct: 585 ----------LELGRKLRKMFIPSPGYDYIVSADYSQIELRLLAHFSEEPKLIEAYQKGE 634 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T ++ F +++V+ E RA K + + Y G + K G ++ + Sbjct: 635 DIHRKTASEVFGVSLEEVTPEMRAHAKSVNFGIVYGISDFGLGRDLKIPREVAGKYIKNY 694 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 N + D + S + +Q A+ L G+ Sbjct: 695 FANYPKVREYLDELVRTAREKGYVTTLFGRRRYIPELSSKNRTVQGFGERTAMNTPLQGS 754 Query: 502 ACELVKKAWRA 512 A +++K A Sbjct: 755 AADIIKLAMIN 765 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 73/197 (37%), Gaps = 17/197 (8%) Query: 465 NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK----HQGVLQL 520 ++ + F + + + +D + + A ++ G + E V RA + G++ Sbjct: 613 ELRLLAHFSEEPKLIEAYQKGEDIHRKTA--SEVFGVSLEEVTPEMRAHAKSVNFGIVYG 670 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSY 579 D G + + + +R + ++ + ++R Y G Y Sbjct: 671 ISDFGLGRDLKIPREVAGKYIKNYFANYPKVREYLDEL---VRTAREKGYVTTLFGRRRY 727 Query: 580 LNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEI 632 + +S+ + +G + N +Q + DI+ M N K ++L+VHDE+ Sbjct: 728 IPELSSKNRTVQGFGERTAMNTPLQGSAADIIKLAMINVEKELKARKLKSRLLLSVHDEL 787 Query: 633 VSETPDTPYFSVGTLCS 649 V E P V L Sbjct: 788 VLEVPAEELEEVKALVK 804 >gi|330685710|gb|EGG97349.1| DNA-directed DNA polymerase [Staphylococcus epidermidis VCU121] Length = 466 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 81/480 (16%), Positives = 162/480 (33%), Gaps = 64/480 (13%) Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 + + KG P D HV + K +++ + + + L+D E L + Sbjct: 17 VTIYGKGKKHHVPEDEILNKHVASIIEAVSESKAEMQKQLKEYNQESLLADLELPLAEIL 76 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + + G D+ + ++++ I ++ L ++I + + L + LF + Sbjct: 77 SEMEEIGIFTDVKDLQQMEKEIQEKLDVLIKNIHEAAGEEF-NINSPKQLGVVLFETLEL 135 Query: 252 DLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGT 308 ++ ++ T +L D IL S + L + +S D R+ Sbjct: 136 PVIKKTKTGYSTAVDVLEQLQGQHPIIDYILEYRQLSKLQSTYVEGLQKVISDDHRIHTR 195 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 A +TGR S QN+P + +R Sbjct: 196 FNQTLA-QTGRLSSVDPNLQNIPIR------------------------LEEGRKIRKAF 230 Query: 369 IA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 S+ ++ AD + IE RVLA I ++ +AF NG DI+ T K F+ D+V Sbjct: 231 KPTSSDSVILSADYSQIELRVLAHITQDESMKEAFINGHDIHTATAMKVFDVEADEVDSL 290 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473 R K + + Y G ++ + + + + Sbjct: 291 MRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAQ 350 Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 S + ++ A+ + G+A +++K A +Q K Sbjct: 351 GFVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAM-------VQFNK 403 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 ++ + + + VP+ + + V ++ S+ +L +K D SY T Sbjct: 404 EVQHTDYHA-KLLLQVHDELIFEVPKDEVASFSKFVEEIMESALKLDVP-LKVDSSYGAT 461 >gi|312867003|ref|ZP_07727214.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] gi|311097485|gb|EFQ55718.1| DNA-directed DNA polymerase [Streptococcus parasanguinis F0405] Length = 881 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 134/414 (32%), Gaps = 58/414 (14%) Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + KG+ + P H+ + + + +L L D E+ L + + Sbjct: 432 YGKGAKKAIPEKAVLLEHLARKVAVLLDTEEPMTEQLKAHDQLDLLYDMEQPLAAVLAKM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +++ + +Q ++L ++I +L + L + LF + L Sbjct: 492 EIAGIKVERQTLQDMQVENEAVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLELPLE 550 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 + + + +LA + I K+ + L + + DG++ Sbjct: 551 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRY 610 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P +R + Sbjct: 611 V-QDLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFV 645 Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN + V+ Sbjct: 646 PEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFQHGADIHTSTAMRVFNIEKPEDVTPN 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473 R K + + Y G + ++ + + + Sbjct: 706 DRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDK 765 Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + S + ++ A+ + G+A +++K A Q Sbjct: 766 GYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQA 819 Score = 44.0 bits (102), Expect = 0.084, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M + + Y +L VHDEIV + P ++ L M Sbjct: 801 IQGSAADILKIAMIHLDQALERGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA 860 Query: 655 PSWAKGLPLKAE 666 +PL+A+ Sbjct: 861 IELV--VPLEAD 870 >gi|301801001|emb|CBW33665.1| DNA polymerase I [Streptococcus pneumoniae INV200] Length = 877 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|54023843|ref|YP_118085.1| DNA polymerase I [Nocardia farcinica IFM 10152] gi|54015351|dbj|BAD56721.1| putative DNA polymerase I [Nocardia farcinica IFM 10152] Length = 910 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 104/579 (17%), Positives = 190/579 (32%), Gaps = 83/579 (14%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A D D T + L L D V H + + G Sbjct: 363 LAIAAADGESGYIDVTVLTPEDEAALAAWLADPAVPKALHEAKSAMHALR---GRGWTLG 419 Query: 92 RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + LA P S L+L + H E D+ + R Sbjct: 420 GLTSDTALAAYLVRPGQRSFNLDDLSLRYL-HRELRAETDDNAQLSLLDDEDAVDAETAR 478 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 A ++A + D E + L L+D E L + T+ + G +D + + L Sbjct: 479 AEMLRARAVLDLAAALDAELEQIESTAL--LTDMELPLLGVLATLEEAGIAVDCEQLEAL 536 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----------G 259 Q A + + E + I + L++ LF + ++ Sbjct: 537 QRQFADKVAQAAEAAYGVIGKQI-NLGSPKQLQVVLFDELDMPKTKRTKTGYTTDADALE 595 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 +L H + L RL + ++ L ++V+ DGR+ T A+ TGR Sbjct: 596 SLFEKTQHPFLEHLLAHRDATRLKVT------VDGLLKSVADDGRIHTTFNQTIAA-TGR 648 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVV 378 S QN+P + + +R + G +L+ Sbjct: 649 LSSTEPNLQNIPIRTDT------------------------GRMIRDTFVVGPGYAELMT 684 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++G++ I+AF +GED++ +KAF+ PI +VS E R K M Sbjct: 685 ADYSQIEMRIMAHLSGDEGLIEAFNSGEDLHSFVASKAFDIPIAEVSPELRRRIKAMSYG 744 Query: 439 LGYQ---GGAKV-FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------- 481 L Y G K + + + + ++ Sbjct: 745 LAYGLSSYGLSAQLKISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRR 804 Query: 482 --------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEG 527 + ++ A+ + GTA +++K A H+G+ ++ + + Sbjct: 805 YLPDLDSSNRQRREAAERMALNAPIQGTAADIIKVAMIDVHRGIREAGLRSRMLLQIHDE 864 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 V EG + ++A + + + + R Sbjct: 865 LVFEVAEGERDALEQLAREKMSAAIALSVPLDVSVGTGR 903 Score = 45.5 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 60/152 (39%), Gaps = 11/152 (7%) Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYL 580 L+ + + A+ ++ R + ++ V+ +R++ Y++ G YL Sbjct: 747 YGLSSYGLSAQLKISTAEAKEQMDIYFSRFGRIRDYLYEVVEQARKVGYTETLFGRRRYL 806 Query: 581 NTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIV 633 S + R ++ N +Q + DI+ M + + G ++L +HDE+V Sbjct: 807 PDLDSSNRQRREAAERMALNAPIQGTAADIIKVAMIDVHRGIREAGLRSRMLLQIHDELV 866 Query: 634 SETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 E + ++ L M+ A +PL Sbjct: 867 FEVAEGERDALEQLAREKMSAAI--ALSVPLD 896 >gi|187933407|ref|YP_001886833.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] gi|187721560|gb|ACD22781.1| DNA polymerase I [Clostridium botulinum B str. Eklund 17B] Length = 871 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 89/542 (16%), Positives = 184/542 (33%), Gaps = 100/542 (18%) Query: 29 VITLCAYAWDDEPVKLWD-----RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 + ++ + D + + + L ++ D+TV V H+S K Sbjct: 340 EYLILG---EEGRSHVIDFKLVSMSNREKALNLLRTFMEDKTVKKVIHDSKNLITFLNKY 396 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSP 143 DI + + + +A + SS N + + L K K D Sbjct: 397 ---DIDIQGFDFDTAIAAYL-IDSSKANYEVFDLINRFLEKD----------IKSDCDDL 442 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 C+ +L K D++ EL+ + E L + ++ G++I+ Sbjct: 443 KAICSSYLTKLYEKLKERLHKEDMD---ELYYK------VEHPLIYVLSSMESIGFKINK 493 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263 D + +L+ ++ +K +++I +L D + L LF + ++ ++ Sbjct: 494 DKLEELRIKFKEQIEKTEKEIYELADEEF-NVSSPKQLGKILFEKLDLPVIKKTKTG--Y 550 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTG 318 + + +L + I K+N+ L + DG + + TG Sbjct: 551 STNQEVLEKLIDKHPIITKVMYYRQITKINSTYVEGLKNVIDIDGCIHSNFN-QTVTTTG 609 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLV 377 R S QN+P + +R I + L+ Sbjct: 610 RLSSTEPNLQNIPIKY------------------------EMGKEIRKVFIPQDSDDILI 645 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 D + IE RVLA +A + I AF + DI+ T ++ F P+D+V+ R+ K + Sbjct: 646 SCDYSQIELRVLAHVADDKNMIDAFEHHSDIHTKTASEVFKVPVDEVTSTMRSNAKAVNF 705 Query: 438 ALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------ 475 + Y A+ K + + + + ++ Sbjct: 706 GIVYGISDFSLAQDLKITKKEAAEYMAIYFERYPKIKEYLNYVSEYAKEKGYVLTILNRR 765 Query: 476 ---EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQG---VLQLWK 522 + +S + ++ A+ + G+A +++K A R K+ +LQ+ Sbjct: 766 RFIPEIKSSNKIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLREKNLNSELILQVHD 825 Query: 523 DL 524 +L Sbjct: 826 EL 827 >gi|227505032|ref|ZP_03935081.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] gi|227198396|gb|EEI78444.1| DNA-directed DNA polymerase [Corynebacterium striatum ATCC 6940] Length = 863 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 63/400 (15%), Positives = 134/400 (33%), Gaps = 59/400 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +D E L + + G +D++++ + ++ + + +L + Sbjct: 461 YTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAEQERAARELAGDDSLNLNSPK 520 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTL 295 L+ LF + ++ + + + K L L Sbjct: 521 QLQAVLFETFEMPKTKKTKTGYSTAAKEIEQLAVNHPHPFLDHLLAHREYQKMKTTLEGL 580 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + V DGR+ T + TGR S QN+P + + Sbjct: 581 IKTVQPDGRIHTTFN-QTVASTGRLSSTEPNLQNIPVRTEA------------------- 620 Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +RS I G + L+ AD + IE RV+A ++ + I+A+ GED++ + Sbjct: 621 -----GRQIRSAFIVGEGFETLMTADYSQIEMRVMAHLSEDPGLIEAYRAGEDLHNYVGS 675 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 K F+ P+D+V+ E R K M L Y G ++ A ++ + + Sbjct: 676 KVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAREAKEIMENYFERFGGVK 735 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + D ++ + ++ A+ + GTA +++K A Sbjct: 736 RYLDNVVEKARKDGYTATVFGRRRYLPELNSDNRLARENAERAALNAPIQGTAADIIKVA 795 Query: 510 WRAKHQGVL----QLWKDLTEGFACVVQEGGSISARRVAN 545 + ++ + + V G + +++ Sbjct: 796 MIRVDNALRDLKSRVLLQVHDELVVEVAPGEADEVKKILE 835 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 79/485 (16%), Positives = 155/485 (31%), Gaps = 60/485 (12%) Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 I RG D + L + + D L + ++S Q L + + Sbjct: 382 IELRGIAHDTAIAAYLLRPGQRTYELSDVYQRHLKKTLGQASDQLSLLDDTSLVDQAAAI 441 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILN------RLASSGSAI------LKLNTLSEAVSS 301 ++++ L L + +L DL L R+ ++G A+ +L+ E V+ Sbjct: 442 MELAAE-LTKQLQAIDSFELYTDLELPLVGILARMEATGIAVDVEILETQLDAFIEQVAE 500 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 R A+R +G N P+Q + +L +T + +T A Sbjct: 501 QER---------AAR--ELAGDDSLNLNSPKQL--QAVLFETFEMPKTKKTKTGYSTAAK 547 Query: 362 DCVRSCIIASN---GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT----TYA 414 + + + + L + ++ + + IK I+ T + Sbjct: 548 EIEQLAVNHPHPFLDHLLAHREYQKMKTTL-------EGLIKTVQPDGRIHTTFNQTVAS 600 Query: 415 --KAFNTPIDKVSKEQRAIG-KVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTST 471 + +T + + R + + A G + T A + ++++ + + Sbjct: 601 TGRLSSTEPNLQNIPVRTEAGRQIRSAFIVGEGFETLMT-ADYSQIEMRVMAHLSEDPGL 659 Query: 472 FEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACV 531 E + E H + V K+ + V R + + + F Sbjct: 660 IEAYRAGEDLHNY---------VGSKVFDVPVDEVTPELRRRVKAMSYGLVYGLSAFGLS 710 Query: 532 VQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMR 589 Q G A+ + KR + V+ +R+ Y + V G YL S Sbjct: 711 QQLGIPAREAKEIMENYFERFGGVKRYLDNVVEKARKDGYTATVFGRRRYLPELNSDNRL 770 Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 R + N +Q + DI+ M ++L VHDE+V E V Sbjct: 771 ARENAERAALNAPIQGTAADIIKVAMIRVDNALRDLKSRVLLQVHDELVVEVAPGEADEV 830 Query: 645 GTLCS 649 + Sbjct: 831 KKILE 835 >gi|227498717|ref|ZP_03928859.1| DNA polymerase I [Acidaminococcus sp. D21] gi|226904171|gb|EEH90089.1| DNA polymerase I [Acidaminococcus sp. D21] Length = 873 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 66/384 (17%), Positives = 133/384 (34%), Gaps = 63/384 (16%) Query: 164 KRDVEATRELFKRLIP-------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 +DVEA + + L+ D E L + + G +D ++ ++ + + ++ Sbjct: 448 AQDVEALMPVLEGLMAERGLTELYRDIELPLTKVLANMEVNGITLDKGMLDEVTKSMTKQ 507 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQL 273 L++ + + L + LF G+ ++ ++ T S+L Sbjct: 508 VADLEQKAKEEAGEDF-NVNSPKQLGVILFEKLGLPIIKKTKSGYSTDVSVLEQLQGEHP 566 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + I+ S L L ++ GR+ A+ TGR S QN+P Sbjct: 567 IIETIMEYRTLSKLLSTYLVALHPLINPNTGRIHTHFN-QMATVTGRLSSTDPNLQNIPT 625 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAW 391 + +R + G L+ D + +E RV+A Sbjct: 626 RT------------------------EVGKQMRRMFVPGKGYDLLMSCDYSQVELRVMAS 661 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 IAG++ I AF +G+DI+ T ++ F PI+ V+ R+ K + + Y G + Sbjct: 662 IAGDERLIDAFRHGQDIHSRTASEIFGVPIEDVTPFMRSKAKTVNFGIIYGISDFGLGRQ 721 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQ 486 S + + + + E+ ++ + + Sbjct: 722 LGVPRSEAAQYIDSYFARYTGVKEYMEGEKKKAREMGYVETLFGRRRYLPDIHAKNFNRR 781 Query: 487 DQYPEFAVKDKLIGTACELVKKAW 510 A+ + GTA +++K A Sbjct: 782 SFAERTAINTPIQGTAADIIKIAM 805 >gi|15899978|ref|NP_344582.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] gi|111656974|ref|ZP_01407784.1| hypothetical protein SpneT_02001792 [Streptococcus pneumoniae TIGR4] gi|27734651|sp|P59199|DPO1_STRPN RecName: Full=DNA polymerase I; Short=POL I gi|14971495|gb|AAK74222.1| DNA polymerase I [Streptococcus pneumoniae TIGR4] Length = 877 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|257784906|ref|YP_003180123.1| DNA polymerase I [Atopobium parvulum DSM 20469] gi|257473413|gb|ACV51532.1| DNA polymerase I [Atopobium parvulum DSM 20469] Length = 912 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 129/403 (32%), Gaps = 67/403 (16%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + RG +D + + + ++ + I + T G + L Sbjct: 513 EMQLLPVLAAMERRGLYVDPQKLAEQSAQLGEDIAQRVASIHQ-TAGEDFNLDSPSQLSH 571 Query: 244 YLFLITGIDLVDMSEG-TLKSILSHSNITQLAKDL-----ILNRLASSGSAILKLNTLSE 297 LF + + + + T + + +LA++ +L + L+ L Sbjct: 572 ILFDVLKLPTYGLKKTRTGFYSTNAKVLGELAQEYQIVADVLEYRERAKIKSTYLDALPS 631 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + D R+ TL + TGR S QN+P + Sbjct: 632 LIRGDKRIHTTLN-QTVTATGRLSSSDPNLQNIPTRS----------------------- 667 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 VR+ G + D + IE R+LA ++ ++ + AF +G D + T A+ F Sbjct: 668 -ELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADEHLVAAFNSGADFHAATAARVF 726 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P+++V+ R+ K + + Y G A K + ++ + Sbjct: 727 GVPVEEVTPALRSRAKAVNFGIVYGQQAFGLATSLKISRKEAQEMIDRYFDAYPGVRAYL 786 Query: 474 DWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 D +H + + A+ + G+A +++K A Sbjct: 787 DDSVRTAHECGYAITMYGRKRHIREFNQSNRQLIAFGERTAMNHPMQGSAADIIKIAMIN 846 Query: 513 ----------KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + +LQ+ +L E S + Sbjct: 847 VEKRLRDEGLTSKLILQIHDELDLEVPESEIETVSTLVKETME 889 >gi|229175295|ref|ZP_04302810.1| DNA polymerase I [Bacillus cereus MM3] gi|228608127|gb|EEK65434.1| DNA polymerase I [Bacillus cereus MM3] Length = 891 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 80/496 (16%), Positives = 166/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 KL + L + LF + ++ ++ T +L IL+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLEKLMDRHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMSDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 16/174 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMSDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 + + M + G ++L VHDE++ E P + L +M Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIGKLEKLVPEVMEHAIE 872 >gi|307702767|ref|ZP_07639718.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] gi|307623680|gb|EFO02666.1| putative DNA polymerase [Streptococcus oralis ATCC 35037] Length = 524 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 67/405 (16%), Positives = 136/405 (33%), Gaps = 68/405 (16%) Query: 157 QLFGEYCKRDV----EATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + F E+ R V E L ++L L D E+ L + + G ++ + + Sbjct: 87 EKFLEHLARKVAVLVETEPVLLEKLSEHGQLDLLYDMEQPLAFVLAKMEIAGIKVKKETL 146 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L++Q ++L ++I +L + L + LF G+ L + + Sbjct: 147 LEMQAENEVVIEQLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 205 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +LA + + I K+ + L + + DG++ ++TGR S Sbjct: 206 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILDDGKIHTRYV-QDLTQTGRLS 264 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 265 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 300 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + + Sbjct: 301 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGV 360 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------D 474 Y G A + + + + + Sbjct: 361 VYGISDFGLANNLGISRKKAKAYIDTYFERFPGIKNYMEEVVREARDKGYVETLFKRRRE 420 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + G+A +++K A + +++ Sbjct: 421 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVE 465 Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN----GYDI--VLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 +Q + DIL M K GY +L VHDEIV E P + +V L M + Sbjct: 444 IQGSAADILKIAMIQLDKALVEGGYQTKMLLQVHDEIVLEVPKSELAAVKDLVKQTMEEA 503 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 504 IQ--LSVPLIAD 513 >gi|317499365|ref|ZP_07957633.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] gi|316893334|gb|EFV15548.1| DNA polymerase I [Lachnospiraceae bacterium 5_1_63FAA] Length = 879 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 65/411 (15%), Positives = 139/411 (33%), Gaps = 73/411 (17%) Query: 174 FKRLIPLSDGERDLWLLD-------------QTINDRGYRIDLDLVLKLQELIAQERKKL 220 + + PLSD +L ++D + RG +D + + + + ++L Sbjct: 460 REAIQPLSDKLTELEMMDLYREIEIPTMFALHDMEVRGIHVDSKALKEYGDQLVGRIEEL 519 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 E I K + L + LF ++ ++ + + + ++ + Sbjct: 520 QESIYKEAGEEF-NINSPKQLGVVLFEHMKLEGAKKTKTGYSTSVE--VLEKIEHLYPII 576 Query: 281 RLASSGSAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + + KL + L+ + D R+ G + TGR S QN+P + Sbjct: 577 SMVLEYRQLTKLKSTYADGLANFIQDDQRIHGKFN-QTITATGRISSTEPNLQNIPIR-- 633 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R + +G + AD + IE RVLA ++ + Sbjct: 634 ----------------------MELGRAIRKVFLPEDGYVFLDADYSQIELRVLAHLSQD 671 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 + I A+ +DI+ T ++ F P+D+V+ QR K + + Y G ++ K Sbjct: 672 EKLIHAYEENQDIHARTASEVFGIPMDEVTSTQRRDAKAVNFGIIYGLSAFGLSQDLKIS 731 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 + ++ F D + +S + ++ Sbjct: 732 RKQAQEYIDRYFAMYPRVKEFLDGEVEKGKTDGYVKTMFNRIRPIPELKSSNFMQRNFGE 791 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA +++K A + + + K + + + I Sbjct: 792 RVAMNSPIQGTAADIIKIAMVRVNMKLKE--KQMKSRLLLQIHDELLIETH 840 Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 9/71 (12%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 +R +G ++ N +Q + DI+ M ++L +HDE++ ET + Sbjct: 786 QRNFGERVAMNSPIQGTAADIIKIAMVRVNMKLKEKQMKSRLLLQIHDELLIETHLDEFE 845 Query: 643 SVGTL--CSLM 651 V + +M Sbjct: 846 EVKEILQNEMM 856 >gi|312198715|ref|YP_004018776.1| DNA polymerase I [Frankia sp. EuI1c] gi|311230051|gb|ADP82906.1| DNA polymerase I [Frankia sp. EuI1c] Length = 971 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 100/567 (17%), Positives = 174/567 (30%), Gaps = 83/567 (14%) Query: 45 WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 D T+ + L L D AH+ + + LG + + LA Sbjct: 434 IDPTQLTPADEQALAGWLADPAKPKAAHDVKGPMLALAE-LGFTL--AGVTSDTALAAYL 490 Query: 104 GLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 LP S L L + K +E + ++ V + GE Sbjct: 491 ALPGQRSFDLGDLVLRYLHRELKADEAPSDGQLTLDVEVEGVEESAEAEVDVVRARAVGE 550 Query: 162 YC-KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 D + R RL L D E L + + G D + + LQ E K+ Sbjct: 551 LADALDGDLERRSAARL--LRDIELPLLTVLAGMERAGIAADAEYLADLQSQYGTEVTKV 608 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNI 270 E ++ + L+ LF G+ + L + H I Sbjct: 609 VEAAHEIVGRPF-NLGSPKQLQQILFEELGLPKTKKIKTGYTTDADALAWLATNSEHPLI 667 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 L + + RL + + +L + GR+ T A+ TGR S QN+ Sbjct: 668 PTLLRHRDVARLKTV------VESLLPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNI 720 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVL 389 P + +R + G L+ AD + IE R++ Sbjct: 721 PIRT------------------------AEGRQIRRAFVVGPGYETLLTADYSQIEMRIM 756 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++G+ I+AFA+GED++ A+AFN P+ +V E R K M L Y G A Sbjct: 757 AHLSGDAGLIEAFASGEDLHTFVAAQAFNLPVAEVDPELRRRIKAMSYGLAYGLSAYGLA 816 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484 ++ + F ++ + Sbjct: 817 TQLGIHPDEARDQMEAYFARFGGVRDFLRGVVDQARKDGYTETILGRRRYLPDLTSDNSQ 876 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSI 538 + A+ + G+A +++K A +G +L + + + G Sbjct: 877 RRQMAERMALNAPIQGSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEIAPGERE 936 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSS 565 A + + + + S Sbjct: 937 RAEALVRAEMANAYTMSVPLEVSVGSG 963 Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 43/122 (35%), Gaps = 8/122 (6%) Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYG 594 AR + + V+ +R+ Y++ + G YL TS + R Sbjct: 822 HPDEARDQMEAYFARFGGVRDFLRGVVDQARKDGYTETILGRRRYLPDLTSDNSQRRQMA 881 Query: 595 GKLTENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTL 647 ++ N +Q + DI+ M + G ++L VHDE+V E L Sbjct: 882 ERMALNAPIQGSAADIIKIAMLGVDRGLRDAGLRSRLLLQVHDELVLEIAPGERERAEAL 941 Query: 648 CS 649 Sbjct: 942 VR 943 >gi|294793595|ref|ZP_06758732.1| DNA polymerase I [Veillonella sp. 3_1_44] gi|294455165|gb|EFG23537.1| DNA polymerase I [Veillonella sp. 3_1_44] Length = 877 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 L RF SI + D + V+A E A RE L E L Sbjct: 429 YLTERFSVPSIANGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 484 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + G ID + + + +E ++ E+I +L + L + LF Sbjct: 485 TLVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELAGETF-NINSPKQLGVILFEKL 543 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303 + ++ ++ + L + + + ++ KL L+ + Sbjct: 544 NLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTH 601 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T + TGR S QN+P + Sbjct: 602 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 636 Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ G LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ D Sbjct: 637 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQD 696 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 +V+ E+R+ K + + Y G ++ + + + D Sbjct: 697 EVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 756 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 E+H + + A+ + GTA +++K A Q Sbjct: 757 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 815 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M + ++L VHDE+V E ++ ++ L Sbjct: 797 IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEEL 848 >gi|294791734|ref|ZP_06756882.1| DNA polymerase I [Veillonella sp. 6_1_27] gi|294456964|gb|EFG25326.1| DNA polymerase I [Veillonella sp. 6_1_27] Length = 877 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 L RF SI + D + V+A E A RE L E L Sbjct: 429 YLTERFSVPSIANGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 484 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + G ID + + + +E ++ E+I +L + L + LF Sbjct: 485 TLVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELAGETF-NINSPKQLGVILFEKM 543 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303 + ++ ++ + L + + + ++ KL L+ + Sbjct: 544 KLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTH 601 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T + TGR S QN+P + Sbjct: 602 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 636 Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ G LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ D Sbjct: 637 IRALFYPGTGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQD 696 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 +V+ E+R+ K + + Y G ++ + + + D Sbjct: 697 EVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 756 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 E+H + + A+ + GTA +++K A Q Sbjct: 757 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 815 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M + ++L VHDE+V E ++ ++ L Sbjct: 797 IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEEL 848 >gi|77408763|ref|ZP_00785493.1| DNA polymerase I [Streptococcus agalactiae COH1] gi|77172608|gb|EAO75747.1| DNA polymerase I [Streptococcus agalactiae COH1] Length = 880 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 73/520 (14%), Positives = 160/520 (30%), Gaps = 76/520 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 L AW + T ++ + + L + ++ ++L + +I Sbjct: 338 LIGIAWGNSD--TIYATSDVSLLQEALFKKALSKP--IKT-YDFKRSKVLLNRF---NID 389 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + LA+ + +L + + KG+ + P Sbjct: 390 LPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAV----YGKGAKRAIPEKTRF 445 Query: 150 ANHVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + ++L ++ L + E+ L + + RG ++ + + Sbjct: 446 LEHLAK--KVKVLVDSEANVMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLN 503 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ + + L ++I +L + L LF G+ + + + Sbjct: 504 EMAIENQKVIETLTQEIYELAGQEF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAV 562 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +LA L I KL + L + + DG++ ++TGR S Sbjct: 563 DVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSS 621 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381 QN+P +R + S L+ +D Sbjct: 622 SDPNLQNIP------------------------VRLEQGRLIRKAFVPSEDNAVLLSSDY 657 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440 + IE RVLA I+ ++ I AF G DI+ +T + F + V+ R K + + Sbjct: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIV 717 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G + + + + + + Sbjct: 718 YGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSL 777 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 S + ++ A+ + G+A +++K A + Sbjct: 778 PDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDR 817 >gi|317154192|ref|YP_004122240.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] gi|316944443|gb|ADU63494.1| DNA polymerase I [Desulfovibrio aespoeensis Aspo-2] Length = 887 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 92/498 (18%), Positives = 164/498 (32%), Gaps = 122/498 (24%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + ++ G +DLD + ++ + +L I++ + R + L Sbjct: 488 DLEIPLIPVLVSMEQAGIGVDLDAFAGFLDDVSTQLDELTRSIIRHAGEPF-NIRSSQQL 546 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNIT------QLAKDLILNRLASSGSAILKLNTL 295 LF I + + T + ++ + + +D++ R+ + L L Sbjct: 547 AAILFDKLDIKEGNKT-ATGQRSTANQVLEAIRSRHPIVEDILEYRMLEKLRST-YLEPL 604 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + V D RL A+ TGR S QN+P + Sbjct: 605 PKLVGEDSRLHTHFNQL-ATATGRLSSSQPNLQNIPIR---------------------- 641 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 G +R+C IA G L AD + IE RVLA +G+ I AF N EDI+ T A Sbjct: 642 --GKHGPRMRACFIAGPGAMLAAADYSQIELRVLAHFSGDPALIDAFRNDEDIHTRTAAL 699 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 + V ++R K + L Y G + +A + + Q + ++ F+ Sbjct: 700 LTDKQPQDVLADERRNAKTINFGLIYGMGPQ---KLARELDITVNQAKEFIE--RYFDKL 754 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 ++++ + L G +L +L Sbjct: 755 ATLKAYYDTIVKDAESHGFVTTLA----------------GRRRLLPEL----------- 787 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 H R+ +V + R+ Sbjct: 788 ------------------HSRNTQLVSQARRQA--------------------------- 802 Query: 596 KLTENIVQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSV-GTLC 648 ++Q + DI+ M K+ G ++L VHDE++ E P+ L Sbjct: 803 --VNTVIQGSAADIIKMAMVAAHKDKDLAALGAHVILQVHDELIIEAPEASIRPAGERLK 860 Query: 649 SLMTKNPSWAKGLPLKAE 666 ++M A +PLK + Sbjct: 861 TIMQSVADLA--VPLKVD 876 >gi|255324619|ref|ZP_05365736.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] gi|255298525|gb|EET77825.1| DNA polymerase I [Corynebacterium tuberculostearicum SK141] Length = 879 Score = 228 bits (580), Expect = 3e-57, Method: Composition-based stats. Identities = 86/538 (15%), Positives = 168/538 (31%), Gaps = 78/538 (14%) Query: 42 VKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 V+L D + + L Q+L + H + + G I + LA Sbjct: 358 VELGDLSAED--DKALAQWLASDAP-KYFHEAKAAFHMLA---GRGIELAGIAHDTALAA 411 Query: 102 TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE 161 P + LA + HL K G A Sbjct: 412 YLLRPGQ-RTYALADVYQRHLQK-TLGAATEQLSLLDDSSLVDQAAA-----------IL 458 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 + A + +D E L + + G +D+D++ ++ ++ + + Sbjct: 459 ELAERLTAELQEIDSFELYTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQE 518 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 +L + L+ LF + ++ + Sbjct: 519 RAARELAGDDKLNLNSPKQLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLD 578 Query: 282 LASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + K L L + V DGR+ T AS TGR S QN+P + + Sbjct: 579 HLLAHREYQKMKTTLEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEA- 636 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396 +RS I +G +L+ AD + IE RV+A ++ + Sbjct: 637 -----------------------GRQIRSAFIVGDGFDELMTADYSQIEMRVMAHLSADP 673 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+A+ GED++ ++ F+ P+D+V+ E R K M L Y G ++ A Sbjct: 674 GLIEAYKEGEDLHNYVGSRVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPA 733 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 ++ + + + D ++ + ++ Sbjct: 734 GEAKSIMESYFERFGGVKKYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAER 793 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545 A+ + GTA +++K A + + ++ + + V G + R + Sbjct: 794 AALNAPIQGTAADIIKVAMIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 851 Score = 45.9 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Query: 602 VQAISRDILCEGMKNATKN--GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + G ++L VHDE+V E V + Sbjct: 800 IQGTAADIIKVAMIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 851 >gi|223984403|ref|ZP_03634542.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] gi|223963645|gb|EEF68018.1| hypothetical protein HOLDEFILI_01836 [Holdemania filiformis DSM 12042] Length = 900 Score = 228 bits (580), Expect = 4e-57, Method: Composition-based stats. Identities = 91/529 (17%), Positives = 167/529 (31%), Gaps = 94/529 (17%) Query: 31 TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 AY + ++ E LL YL E + ++ G + Sbjct: 367 LALAY----QDQAVYIPIEDVRQDEALLAYLAGEK-TKIVYDVK---ACLHLADGAGLTI 418 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 +++A C + S+ + + G ++D + Sbjct: 419 NGMKIDAMIAAFL---------CDSTLTSDQKIREKFGLTET-----VTMDEVYGKPGKM 464 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLS----------DGERDLWLLDQTINDRGYR 200 + QL + C + ++ L+K P D E L + + G R Sbjct: 465 KLPEP-QLQRQLCAQKIQLIDALWKDSEPKLKEMEIVSLFYDVEMPLAAVLYKMEKEGIR 523 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 ID + + L + I + L LF G+ T Sbjct: 524 IDSQTLDDIARQTQARLDALTDAIYAAAGETF-NINSPKQLGEVLFDKLGLPASGKKRST 582 Query: 261 LKSILS-----HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 +L H I L + +L S+ + L + + DGR+ A+ Sbjct: 583 SADVLEKLLGVHPIIADLLEFRKYQKLYSTYA-----EGLKKYIHPDGRIHTIYNQC-AT 636 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 +TGR S QN+ S VR + S G Sbjct: 637 QTGRLSSTEPNLQNIS------------------------VRDEESREVRKAFLPSEGNV 672 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 LV +D + IE R+LA +A E + AF + DI+ T + F P+D+V + R K + Sbjct: 673 LVASDYSQIELRMLAHMADEQGLLDAFRHAVDIHTKTASDVFQIPLDQVDAKHRRQAKAV 732 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-------EQAESHHLW 484 + Y G ++ + ++++ Q+ + S + D + L Sbjct: 733 NFGIVYGISDFGLSQQLDISRAQAKEFIERYLQSYPNISKYMDQVISFCQEHGYTATMLG 792 Query: 485 MQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + PE A+ + G+A +L+K A + + + Sbjct: 793 RRREVPEIHDKNYMTREFGKRAAMNAPIQGSAADLIKLAMIRIDKAISE 841 >gi|12001922|gb|AAG43104.1|AF038544_1 DNA polymerase I [Brachyspira hyodysenteriae] Length = 920 Score = 228 bits (580), Expect = 4e-57, Method: Composition-based stats. Identities = 99/597 (16%), Positives = 190/597 (31%), Gaps = 110/597 (18%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-----LLQY 60 ID ET G+ + + I ++A D + ++ + D + Sbjct: 354 IDFET--------TGLDTFKD--TIIGISFAIKSNEAFYLDLSGRTKIGKDKCMNLVFDT 403 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L E + + HN +E + K +G I + + T V A P+ + L Sbjct: 404 LEKEDIKVIGHNLKYEYKMMK-AIGKSIGNM-YFDTMV-AAYLINPTRGRYNMDDL---- 456 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDVEATRELFKRLI 178 IA +I + L EY D + T ++ Sbjct: 457 ----------AIAYLSYNTIKYSDLTDNAKKTLLDAPLKDVVEYACEDADVTFRFYECFA 506 Query: 179 PLS----------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 PL + E L + + G I + + L + + +K E I Sbjct: 507 PLLKTHNLEELFFNIEMPLVSVLADMEFDGVYISSERMKALSDEYSSLLEKTKEKIYAEA 566 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + L LF GI ++ T + +L+ + + +L + Sbjct: 567 GEEF-NLQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYA 625 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L+ ++ GR+ + + TGR S QN+P Sbjct: 626 KLKNTYLDVFPTLINEKTGRIHASFN-QTVTATGRLSSSEPNLQNIP------------- 671 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 G +R+ I G L+ AD + IE R+LA + + ++AF N Sbjct: 672 -----------VRGEEGREIRNTFIPEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKN 720 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 +DI+ T K ++ + V+ R I K++ ++ Y G +K ++ Sbjct: 721 NDDIHRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKKKEAEDFIK 780 Query: 461 QFSQNVKSTSTFEDWEQAE----------------------SHHLWMQDQYPEFAVKDKL 498 +S F D E S + +++ A+ + Sbjct: 781 GYSSTYSRVKPFCDEVVEEVRNKGFVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLI 840 Query: 499 IGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 G+A +++K A A H+ V+Q+ +L + + + + Sbjct: 841 QGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEIME 897 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650 ++Q + D++ M K IV+ VHDE+V E + T+ + Sbjct: 836 LNTLIQGSAADMIKVAMVAIHKEFKNHLKTAKIVMQVHDELVVEVSEAEADKAMTIMKEI 895 Query: 651 M 651 M Sbjct: 896 M 896 >gi|42783764|ref|NP_981011.1| DNA polymerase I [Bacillus cereus ATCC 10987] gi|42739694|gb|AAS43619.1| DNA polymerase I [Bacillus cereus ATCC 10987] Length = 877 Score = 228 bits (580), Expect = 4e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGREF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 >gi|282848822|ref|ZP_06258215.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] gi|282581476|gb|EFB86866.1| DNA-directed DNA polymerase [Veillonella parvula ATCC 17745] Length = 873 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 L RF SI + D + V+A E A RE L E L Sbjct: 425 YLTERFSVPSIANGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 480 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + G ID + + + +E ++ E+I +L + L + LF Sbjct: 481 TLVVMEKNGIYIDTEKLAETTARFKEELTQVQEEIYELAGETF-NINSPKQLGVILFEKL 539 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303 + ++ ++ + L + + + ++ KL L+ + Sbjct: 540 NLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTH 597 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T + TGR S QN+P + Sbjct: 598 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 632 Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ G LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ D Sbjct: 633 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQD 692 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 +V+ E+R+ K + + Y G ++ + + + D Sbjct: 693 EVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 752 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 E+H + + A+ + GTA +++K A Q Sbjct: 753 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 811 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTL 647 +Q + DI+ M + ++L VHDE+V E ++ ++ L Sbjct: 793 IQGTAADIIKLAMNQVEQKLEEQNFTSRLLLQVHDELVLEVVNSELEAIEEL 844 >gi|148996437|ref|ZP_01824155.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|168576933|ref|ZP_02722775.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225860073|ref|YP_002741582.1| DNA polymerase I [Streptococcus pneumoniae Taiwan19F-14] gi|298230353|ref|ZP_06964034.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255493|ref|ZP_06979079.1| DNA polymerase I [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501821|ref|YP_003723761.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|147757012|gb|EDK64051.1| DNA polymerase I [Streptococcus pneumoniae SP11-BS70] gi|183577415|gb|EDT97943.1| DNA polymerase I (POL I) [Streptococcus pneumoniae MLV-016] gi|225728406|gb|ACO24257.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Taiwan19F-14] gi|298237416|gb|ADI68547.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|327390446|gb|EGE88786.1| DNA polymerase I family protein [Streptococcus pneumoniae GA04375] Length = 877 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|229087143|ref|ZP_04219293.1| DNA polymerase I [Bacillus cereus Rock3-44] gi|228696211|gb|EEL49046.1| DNA polymerase I [Bacillus cereus Rock3-44] Length = 884 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 80/492 (16%), Positives = 165/492 (33%), Gaps = 74/492 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L DE + ++ + K D+ K ++A P+ Sbjct: 363 EAFTKWLADEDMRKYTFDAKRAIVALK---WKDVEIKGIDFDLLIAAYLLDPADTDKDFR 419 Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 A + KM+E A+ + KG+ + P A HV ++ + + Sbjct: 420 A------VAKMKETHAVKSDEEVYGKGAKRAVPEQGVVAEHVAR-KVHVLFDVQKTFVEE 472 Query: 172 ELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L ++ E L + + +G ++D + + + + +A K++++ I +L Sbjct: 473 LEKNEQYELFTELEMPLARVLAEMEVKGVKVDTERLRNMGDELAGRLKEMEQKIYELAGT 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----ILNRLASS 285 + L + LF + ++ ++ S + +L IL+ Sbjct: 533 EF-NINSPKQLGVVLFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNILHYRQLG 589 Query: 286 GSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + V D ++ ++TGR S QN+P + Sbjct: 590 KLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----------- 637 Query: 345 QALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R I S G + AD + IE RVLA IA + ++AF Sbjct: 638 -------------LEEGRKIRQAFIPSTEGWVMYAADYSQIELRVLAHIAKDKGLVEAFQ 684 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 + DI+ T F D+V+ R K + + Y G ++ G + Sbjct: 685 HDMDIHTKTAMDVFGVGEDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFI 744 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D + S + ++ A+ + Sbjct: 745 EKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPI 804 Query: 499 IGTACELVKKAW 510 G+A +++KKA Sbjct: 805 QGSAADIIKKAM 816 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + G ++L VHDE++ E P + L +M Sbjct: 804 IQGSAADIIKKAMIIMANRLEEEGLQARLLLQVHDELIFEVPKEEVEKLEKLVPEVMEHA 863 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 864 IELA--VPLKVD 873 >gi|89898685|ref|YP_515795.1| DNA polymerase I [Chlamydophila felis Fe/C-56] gi|89332057|dbj|BAE81650.1| DNA polymerase I [Chlamydophila felis Fe/C-56] Length = 869 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 90/517 (17%), Positives = 175/517 (33%), Gaps = 72/517 (13%) Query: 28 AVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRD----ETVMCVAHNSLFERILFKK 82 ++L A D+ V D D+++ L+D + +N + K Sbjct: 324 PSLSLMGVALACDDSVYYVDV---ENATDDVIKPLKDFFGRKDTEFYGYNIKRDSHALKN 380 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 GI + + +A L L N +++ L + + + S Sbjct: 381 A-GIHVNN--------IALDLALAEHLINGGAKISYQTLLADLGLVSSAGRYGKEWGQLS 431 Query: 143 PPYDCTRANHVQAWQLFGEYC---KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 P + N Q + F + K + + + E L + TI G Sbjct: 432 LPIQKSPPNPAQYFGEFVSHLPTIKETLLKELKSKNIEDIFFNMEMPLEKVLFTIERNGM 491 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +D++ + L++++++E L +DI L + + L L+ G+ VD + Sbjct: 492 PLDVEDLQNLEKILSEELAILADDIYALAGSPF-NIKSPKQLAEVLYNKLGLTPVDKARS 550 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 T +L + IL + + L + V R+ T G + TG Sbjct: 551 TKAEVLEAMTGEHDVIEKILAFRSVEKLLSTYVRALPKQVDPCTFRIHPTFNQMG-TVTG 609 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLV 377 R + QN+P + +R + Sbjct: 610 RLACQDPNLQNIPIRSER------------------------GRLLRKAFCDTHQNTYFL 645 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R LA ++ ++ AF + ED++ T ++ F+ P++KV+K+QR K + Sbjct: 646 SADYSQIELRFLAHLSQDESLKLAFESREDVHTFTASQVFHVPLEKVTKQQRMQAKTVNF 705 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------- 480 + Y G +K+ K S + + + F + +++ Sbjct: 706 GIIYGQQAYGLSKILKISVSEAQKLIDAYFDRYPDVARFINETVSQACENLRVKTLLGRE 765 Query: 481 -------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + AV ++ G+A EL+K A Sbjct: 766 RIIDNWTEFSNSRAASGRLAVNTRIQGSAAELIKLAM 802 >gi|194397391|ref|YP_002036753.1| DNA polymerase I [Streptococcus pneumoniae G54] gi|194357058|gb|ACF55506.1| DNA polymerase I [Streptococcus pneumoniae G54] Length = 877 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|297587691|ref|ZP_06946335.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] gi|297574380|gb|EFH93100.1| DNA-directed DNA polymerase I [Finegoldia magna ATCC 53516] Length = 875 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 92/549 (16%), Positives = 182/549 (33%), Gaps = 88/549 (16%) Query: 28 AVITLCA--YAWDDEPVKLWD------RTEQSAMPSDLLQYLRDETVMCVAHNSLFERIL 79 L Y D+EPV T + + + V ++ + Sbjct: 319 FTFALFNDDYYVDNEPVIFAIYTDKVYITRNVDIVKSFKEEFESKDVNKLSFDIK---PC 375 Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIAR 134 + I V+ PS ++ + + + GK + Sbjct: 376 IYHLMRYGIDISYNYDDVVIIEYLLDPSKTSYSMERSDPKVIGYDFKSLEDITGKGRSKK 435 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQT 193 S + N++ + +F + E E L D E L + Sbjct: 436 TILESDEKEI-----DNYIVKYMMFTNKLYEKISEIEEEDMMHLY--RDVEIPLIKVLCD 488 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G + + ++++ EL E K +++ + +L I + + L LF + + Sbjct: 489 MEFTGVCVKKETLVEMGELFEDEIKSIEDSVEELIGKKI-NINSSKQLAEVLFEDLELPV 547 Query: 254 VDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 + ++ T + +L + D IL + ++ + + + DG++ T Q Sbjct: 548 IKKNKTGPSTDQEVLEALSGRHEIIDYILRYRTIAKLKTTYIDGMVDLIKEDGKIHTTFQ 607 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A +TGR S QN+P + +R + Sbjct: 608 QTIA-QTGRISSTNPNLQNIPIRT------------------------EEGRLIRKAFVP 642 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 S G L+ AD + IE RVLA +A ++ I AF NG DI+ T ++ F DKV+ QR+ Sbjct: 643 SQGSVLLDADYSQIELRVLADLANDEVMIDAFKNGADIHRKTASEVFKVDFDKVTSLQRS 702 Query: 431 IGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED------------ 474 K + + Y G +K ++ + K + + Sbjct: 703 NAKAVNFGIVYGIGDYSLSKDLHITRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYV 762 Query: 475 ---------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQ 515 + +S + ++ A+ + G+A +++K A K + Sbjct: 763 ETIMKRRRYIPELKSKNYNVRSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEENLKAK 822 Query: 516 GVLQLWKDL 524 +LQ+ +L Sbjct: 823 LILQVHDEL 831 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 11/134 (8%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + + + + + V I + Y+ S+ Sbjct: 726 ITRKEAKEYIENYLDTYKEIKQYMEDIVAIGKEKGYVETIMKRR---RYIPELKSKNYNV 782 Query: 591 RTYGGKLTENI-VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M N ++L VHDE++ + P+ Sbjct: 783 RSFGERVALNTPIQGSAADIIKVAMVKFYNRLNEENLKAKLILQVHDELIVDCPEDEREK 842 Query: 644 VGTLCS-LMTKNPS 656 V + +MT Sbjct: 843 VLEIMKDVMTHAVD 856 >gi|148985374|ref|ZP_01818579.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|147922332|gb|EDK73452.1| DNA polymerase I [Streptococcus pneumoniae SP3-BS71] gi|301799217|emb|CBW31733.1| DNA polymerase I [Streptococcus pneumoniae OXC141] Length = 877 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|229163579|ref|ZP_04291528.1| DNA polymerase I [Bacillus cereus R309803] gi|228619829|gb|EEK76706.1| DNA polymerase I [Bacillus cereus R309803] Length = 891 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 82/496 (16%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ + K GIDI + ++A L A Sbjct: 370 DAFKEWLANGEMRKHTFDAKRAIVALK-WNGIDIQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + I ++ E L + + +G ++D D + + E +A K+++++I Sbjct: 474 QTFIEELEKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSCKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF N DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQNDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|218247875|ref|YP_002373246.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|257060804|ref|YP_003138692.1| DNA polymerase I [Cyanothece sp. PCC 8802] gi|218168353|gb|ACK67090.1| DNA polymerase I [Cyanothece sp. PCC 8801] gi|256590970|gb|ACV01857.1| DNA polymerase I [Cyanothece sp. PCC 8802] Length = 972 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 113/625 (18%), Positives = 205/625 (32%), Gaps = 126/625 (20%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 ++ A+ L L + V N+ F+R++F GI++ K + ++LA P Sbjct: 428 KKEAVLQALKPILESDRYPKVFQNTKFDRLIF-YHQGINL--KGVVFDTLLASYVLHPE- 483 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 ++ N S+ + G + V YC D Sbjct: 484 -----MSHNLSDLCYRYLSGITSQSYKELAIPKGKTIASLDIETV------ANYCGLDAY 532 Query: 169 ATRELFKRL------IP-----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 AT L +L P L + E+ L + + D G RID D + +L + + Q+ Sbjct: 533 ATFLLVSKLKQELKSFPSLEKLLLEVEQPLEPVLAAMEDIGIRIDTDYLQQLSQQLEQDL 592 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 +++ + G I + L LF ++ + H+ + +L D Sbjct: 593 HIIEQQAYQ-EAGEIFNLGSPKQLGEILFEKLELNRKKSRKTKTGYSTDHATLEKLQGDH 651 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + + KL + L V D R+ + TGR S QN+P Sbjct: 652 PIIDHILDYRTLSKLKSTYVDALPALVRPDTQRVHTNFN-QTVTATGRLSSSNPNLQNIP 710 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + S +R I LV AD + IE R+LA Sbjct: 711 IRT------------------------EFSRKIRQAFIPQENWLLVSADYSQIELRILAH 746 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ E ++A+ N +D++ T F+ + ++ ++R +GK + + Y GA+ F Sbjct: 747 LSQEVVLLEAYRNNQDVHSVTAKLLFDK--ETITPQERNLGKTINFGVIYGMGAQRFARE 804 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 A G + K Sbjct: 805 A-----------------------------------------------GVSAAEGKTFIN 817 Query: 512 AKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 Q +++ L + +G + L RR+ + L + Sbjct: 818 KYRQRYAKVFDYLERMKKEAIADGFVTTI--------LGRRRYFNFITESLQKLKGSDPE 869 Query: 572 DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLT 627 + + +N A +QL+R +Q S DI+ M + + Y ++L Sbjct: 870 KINLEVLNINYADAQLLRAAANAP------IQGSSADIIKIAMIKMQEILSHYQARLLLQ 923 Query: 628 VHDEIVSETPDTPYFSVG-TLCSLM 651 VHDE+V E P + + + M Sbjct: 924 VHDELVFEIPLNEWEELQTKIKETM 948 >gi|296875409|ref|ZP_06899483.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] gi|296433602|gb|EFH19375.1| DNA-directed DNA polymerase I [Streptococcus parasanguinis ATCC 15912] Length = 881 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 133/414 (32%), Gaps = 58/414 (14%) Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + KG + P H+ + + + +L L D E+ L + + Sbjct: 432 YGKGVKRAIPERAVLLEHLALKVAVLLDTEEPMVEQLQAHDQLDLLYDMEQPLAAVLAKM 491 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G +++ + +Q ++L ++I +L + L + LF + L Sbjct: 492 EIAGIKVERQTLEDMQVENEVVLERLTQEIYELAGEEF-NINSPKQLGVILFEKLELPLE 550 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 + + + +LA + I K+ + L + + DG++ Sbjct: 551 YTKKTKTGYSTAVDVLERLAPIAPIVSKILEYRQIAKIQSTYVIGLQDWILEDGKIHTRY 610 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P +R + Sbjct: 611 V-QDLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFV 645 Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 L+ +D + IE RVLA I+G++ I AF +G DI+ +T + FN + V+ Sbjct: 646 PEEENSVLLSSDYSQIELRVLAHISGDEHLIDAFKHGADIHTSTAMRVFNIEKPEDVTPN 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473 R K + + Y G + ++ + + + Sbjct: 706 DRRNAKAVNFGVVYGISDFGLSNNLGISRKEAKAYIETYFERYPGIKDYMERVVREARDK 765 Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + S + ++ A+ + G+A +++K A Q Sbjct: 766 GYVETLFKRRREIPDINSRNFNVRGFAERTAINSPIQGSAADILKIAMIHLDQA 819 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M + Y +L VHDEIV + P ++ L M Sbjct: 801 IQGSAADILKIAMIHLDQALEAGAYKTKMLLQVHDEIVLQVPSDELAAIKELVKETMESA 860 Query: 655 PSWAKGLPLKAE 666 A +PL+A+ Sbjct: 861 IELA--VPLEAD 870 >gi|229198735|ref|ZP_04325433.1| DNA polymerase I [Bacillus cereus m1293] gi|228584757|gb|EEK42877.1| DNA polymerase I [Bacillus cereus m1293] Length = 891 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKYTFDAKRAIVALK-WNGIDVQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 DAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|303267612|ref|ZP_07353453.1| DNA polymerase I [Streptococcus pneumoniae BS457] gi|302642862|gb|EFL73168.1| DNA polymerase I [Streptococcus pneumoniae BS457] Length = 575 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 152 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 211 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 212 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 270 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 271 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 327 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 328 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 365 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 366 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 425 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 426 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 485 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 486 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 537 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 538 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 575 >gi|229048294|ref|ZP_04193862.1| DNA polymerase I [Bacillus cereus AH676] gi|228723019|gb|EEL74396.1| DNA polymerase I [Bacillus cereus AH676] Length = 891 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEIVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + D + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 >gi|24378800|ref|NP_720755.1| DNA polymerase I [Streptococcus mutans UA159] gi|24376673|gb|AAN58061.1|AE014878_7 DNA polymerase I (POL I) [Streptococcus mutans UA159] Length = 878 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 87/522 (16%), Positives = 169/522 (32%), Gaps = 72/522 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLRDETVMCVAHNSLFER-ILFKKTLGIDIP 89 + AW D ++ T+ S + DL + L + F+R + LGID+P Sbjct: 336 MIGLAWGD-DQAIYATTDTSLLTHDLFKEALSKP--IKT---YDFKRGKVLLSHLGIDLP 389 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + + S LA+ N L + + KG+ + P Sbjct: 390 TASF--DSRLAKYLLSTVENNNISTIARLYTDLPLETDDDV----YGKGAKRAIPEKNVL 443 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 +H+ + + +L L + E L + + G + + + + Sbjct: 444 LSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAGISVRKETLQDM 503 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 + E + L ++I L + L + LF G+ L + + Sbjct: 504 ERANEIELQALTQEIYDLAGEAF-NINSPKQLGVILFEKLGLPLSATKKTKTGYSTAVDV 562 Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA + I KL + L +++S DG++ ++TGR S Sbjct: 563 LERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGKIHTRY-LQDLTQTGRLSSVD 621 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +R + + L+ +D + Sbjct: 622 PNLQNIP------------------------VRLEQGRLIRKAFVPEWKESVLLSSDYSQ 657 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 658 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYG 717 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQ 477 G A ++ + + + D Sbjct: 718 ISDFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPD 777 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + G+A +++K A Q + + Sbjct: 778 INSRNFNIRSFAERTAINSPIQGSAADILKVAMIHLDQALKK 819 >gi|299688943|pdb|3HPO|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus Y714s Mutant Bound To G:t Mismatch Length = 580 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELXGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIVSGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNFGIVSGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|228923331|ref|ZP_04086619.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836285|gb|EEM81638.1| DNA polymerase I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 891 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDIK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D D + + E +A K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIQKLEQLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|169833568|ref|YP_001693553.1| DNA polymerase I [Streptococcus pneumoniae Hungary19A-6] gi|168996070|gb|ACA36682.1| DNA polymerase I (POL I) [Streptococcus pneumoniae Hungary19A-6] Length = 877 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDDVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|322377942|ref|ZP_08052430.1| DNA polymerase I [Streptococcus sp. M334] gi|321281118|gb|EFX58130.1| DNA polymerase I [Streptococcus sp. M334] Length = 889 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 74/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%) Query: 157 QLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + F E+ R VE L ++L L D E+ L + + G + + + Sbjct: 452 EKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVKKETL 511 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L++Q +KL ++I +L + L + LF G+ L + + Sbjct: 512 LEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 570 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +LA + + I K+ + L + + +DG++ ++TGR S Sbjct: 571 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 629 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 630 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 665 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + + Sbjct: 666 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGV 725 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474 Y G + + + + + D Sbjct: 726 VYGISDFGLSNNLGISRKEAKSYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 785 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 S + ++ A+ + G+A +++K A + ++ + Sbjct: 786 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 837 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + V VP+ + K+ V + + +L + + ++ Sbjct: 838 LLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 889 >gi|229032231|ref|ZP_04188204.1| DNA polymerase I [Bacillus cereus AH1271] gi|228729011|gb|EEL80014.1| DNA polymerase I [Bacillus cereus AH1271] Length = 891 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 81/496 (16%), Positives = 165/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGAMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELQKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 KL + L + LF + ++ ++ T +L IL+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLEKLMDRHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 DAFQRDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLKRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|148244250|ref|YP_001218944.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] gi|146326077|dbj|BAF61220.1| DNA polymerase I [Candidatus Vesicomyosocius okutanii HA] Length = 909 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 85/538 (15%), Positives = 184/538 (34%), Gaps = 80/538 (14%) Query: 27 QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGI 86 + + + D P +L + + + L L D ++ + N ++ + Sbjct: 360 DSFYVPVNHDYIDAPKQL----NFNDVLNQLKPILEDVSISKIGQNLKYDAHILSNY--- 412 Query: 87 DIPSKRWICTSVLART--NGLPSSLKNACLALNFSEH-----LTKMEEGKALIARFCKGS 139 I + ++ N + + L+ + + + + +GK + F + + Sbjct: 413 KIDLQGISDDVIVKSYCLNSVATRHNMNDLSEYYLNYQTINFVDILGKGKKQVT-FNQVN 471 Query: 140 ID-SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDR 197 ++ + Y C ++ + RL+ L E L + + Sbjct: 472 VEIALLYVCENVIITSLLNHM-------LDEEIAQYPRLVKLYQNLELPLIKVLLCMERN 524 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G +D++++ Q I Q+ + + + +L D + ++ LF G+ L+ + Sbjct: 525 GVELDVNILSTQQLDITQQMEDIKNQVFELADNVFNLE-SPKQIQRILFESKGLGLIPLR 583 Query: 258 EGTLKSILSHSNITQLAK----DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFY 312 + ++ +L DLIL+ + L L + + RL + Sbjct: 584 KTPKGVPSTNEEALKLLDHPVVDLILSYRTLAKLNSTYLEVLPRKIDLNTHRLHTSYN-Q 642 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + TGR S QN+P C+R I Sbjct: 643 VVTATGRLSSSNPNLQNIP------------------------IFSEQGSCIRGAFITGK 678 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G ++ AD + IE R++ ++ + ++AF N +D++ T + FN PID+V+ E R Sbjct: 679 GNVIISADYSQIELRIMTQLSKDQNLLEAFNNDKDVHSETASTMFNIPIDEVTSEYRRRA 738 Query: 433 KVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------- 474 K + L Y AK + + + N S + D Sbjct: 739 KAINFGLIYGMSAYGLAKQIGVSRTKAKQYMDTYFDNYPSVLYYMDNIKEIAKVQGYVET 798 Query: 475 -------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 Q + + +Q A+ + G++ +++KK+ + + Q D+ Sbjct: 799 IMGRRLYLPQINAKNKMLQQHALRTAINAPMQGSSADIIKKSMFDVYTWIGQDNPDIR 856 >gi|225855819|ref|YP_002737330.1| DNA polymerase I [Streptococcus pneumoniae P1031] gi|225725792|gb|ACO21644.1| DNA polymerase I (POL I) [Streptococcus pneumoniae P1031] Length = 877 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|299822773|ref|ZP_07054659.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] gi|299816302|gb|EFI83540.1| DNA-directed DNA polymerase I [Listeria grayi DSM 20601] Length = 903 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 74/482 (15%), Positives = 163/482 (33%), Gaps = 66/482 (13%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--KNACLALNF 118 + D +++ + + + +P + + +LA PS A +A + Sbjct: 388 ISDPNQTKAVYDAKKTMVTLNR---LGLPCEGILFDFMLASYVLDPSQTIDDFASVASRY 444 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + +E F KG+ + P + A+H+ + ++ V + E ++L Sbjct: 445 DYTQVEADE-----LVFGKGAKYNVPDETKVADHLARKAVAIAKLEQTVNESLEKNEQLE 499 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 + + E L + + G R+D + + +++ +A + ++ I +L + Sbjct: 500 LVDNLELPLTFVLAKMEMEGVRVDTERLEEMKSEMAVRLQTIESSIHELAGTTF-NINSP 558 Query: 239 YALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L + LF G+ V ++ T +L + D IL + L Sbjct: 559 KQLGVILFETLGLPPVKKTKTGYSTAADVLESLSGKHPIIDEILLYRQLGKLQSTYVEGL 618 Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + ++ ++TGR S QN+P + Sbjct: 619 LKVTDKKTSKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR--------------------- 656 Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + S G K+ AD + +E RVLA I+ ++ + AF N DI+ T Sbjct: 657 ---LEEGRKIRQVFVPSHPGWKMFSADYSQVELRVLAHISQDENLVYAFRNDYDIHTKTA 713 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 F+ +V R K + + Y G ++ + ++ + Sbjct: 714 MDVFHVSEAEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAKDFIDRYFASYPDV 773 Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + + + S + ++ A+ + G+A +++K+ Sbjct: 774 KVYMEEIVRSAKEKGYVETILHRRRYIPEITSRNFNVRSFAERTAMNTPIQGSAADIIKQ 833 Query: 509 AW 510 A Sbjct: 834 AM 835 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 9/79 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE++ E P+ + + +M Sbjct: 823 IQGSAADIIKQAMLLMDERLESEQMEAKLLLQVHDELIFEAPEAEIAKLAEIVPDVMENA 882 Query: 655 PSWAKGLPLKAEGYEAKRY 673 A +PLK + + Sbjct: 883 V--ALSVPLKVDSAHGDSW 899 >gi|307704639|ref|ZP_07641540.1| DNA polymerase I [Streptococcus mitis SK597] gi|307621792|gb|EFO00828.1| DNA polymerase I [Streptococcus mitis SK597] Length = 877 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 90/596 (15%), Positives = 196/596 (32%), Gaps = 97/596 (16%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A++ D KL+ + + + + ++T + V ++ ++L + LG+D+ + Sbjct: 337 FAWSCGD---KLYATDKLELLQEPIFKAFLEKTPLRV-YDFKKAKVLLHR-LGVDLQAPA 391 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + S LA+ + +++ + KG + P Sbjct: 392 F--DSRLAKYLLSTVEDNEIATIASLYGQTYLVDD----ETFYGKGVKKALPER------ 439 Query: 153 VQAWQLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202 + F E+ R VE L ++L L D E+ L + + G + Sbjct: 440 ----EKFLEHLARKLSVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVK 495 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + +L++Q +KL ++I +L + L + LF G+ L + Sbjct: 496 KETLLEMQTENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + + +LA + + I K+ + L + + +DG++ ++T Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQT 613 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAV 709 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474 + Y G + + + + + D Sbjct: 710 NFGVVYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 769 Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 S + ++ A+ + G+A +++K A + +++ Sbjct: 770 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALVEGGYQ------- 822 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + V VP+ + K+ V + + +L + + ++ Sbjct: 823 -TKMLLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|229013790|ref|ZP_04170918.1| DNA polymerase I [Bacillus mycoides DSM 2048] gi|228747459|gb|EEL97334.1| DNA polymerase I [Bacillus mycoides DSM 2048] Length = 891 Score = 227 bits (578), Expect = 5e-57, Method: Composition-based stats. Identities = 77/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ + K G+DI + ++A L A Sbjct: 370 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFRHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 808 NTPIQGSAADIIKKAM 823 >gi|313885140|ref|ZP_07818892.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] gi|312619831|gb|EFR31268.1| DNA-directed DNA polymerase [Eremococcus coleocola ACS-139-V-Col8] Length = 887 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 80/509 (15%), Positives = 164/509 (32%), Gaps = 73/509 (14%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 D + L D + P+ +L D + + +S ++++ G+D+ + Sbjct: 349 LDSHEIYLADWDQAIQSPA-FKAWLADASNQKILFDSKRDQVILANA-GLDLAGIDF--D 404 Query: 97 SVLARTN---GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 ++A L L + + + E A + KG+ + P +H+ Sbjct: 405 IMIANYLIDTHLAKELADMLTNNDMPSLVKYDE------AVYGKGAKQAVPDSAELNDHL 458 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + + E L + + +G ++D ++ + + Sbjct: 459 ANKVKAMGLLVEPLTQQLKDLHMWDLYQTIEMPLARVLARMEIQGVKVDAQILADKNQAL 518 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQL 273 + +++ +I L + L + LF + ++ ++ + + +L Sbjct: 519 LERLAQMEAEIYDLAGEEF-NINSVKQLGVILFEKLELPIIKKTKTG--YSTAADVLEKL 575 Query: 274 AKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 A + I KL L + DG++ ++TGR S Q Sbjct: 576 ADKHPIIPAILEYRQISKLQGTYLAGLPTYIKEDGKIHSRFV-QTLTQTGRLSSADPNLQ 634 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEAR 387 N+P + +R + + G +L AD + IE R Sbjct: 635 NIPAR------------------------IEEGRRIRQAFVPAHEGWQLFGADYSQIELR 670 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV-SKEQRAIGKVMELALGYQ---- 442 VLA IA + I AF +GEDI+ T + F D V R K + + Y Sbjct: 671 VLAHIAQDQHMIAAFKSGEDIHEATARRVFGLDPDTVIDANLRRQAKAVNFGIVYGISDY 730 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------------- 481 G + H ++ + + F + AE+ Sbjct: 731 GLSNNLNIPRKHAKAFIENYFEKYPDIHQFMEDIVAEAKEKGYVETLFKRRRYLPDIDAS 790 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + ++ A+ + GTA +++K A Sbjct: 791 NFNIRSFAERTAMNSPIQGTAADIIKIAM 819 >gi|229180906|ref|ZP_04308241.1| DNA polymerase I [Bacillus cereus 172560W] gi|229192788|ref|ZP_04319746.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228590627|gb|EEK48488.1| DNA polymerase I [Bacillus cereus ATCC 10876] gi|228602463|gb|EEK59949.1| DNA polymerase I [Bacillus cereus 172560W] Length = 891 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPKLEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|299688922|pdb|3HP6|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch gi|299688923|pdb|3HP6|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus F710y Mutant Bound To G:t Mismatch Length = 580 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELXGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|296123254|ref|YP_003631032.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] gi|296015594|gb|ADG68833.1| DNA polymerase I [Planctomyces limnophilus DSM 3776] Length = 957 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 89/570 (15%), Positives = 173/570 (30%), Gaps = 112/570 (19%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVIT--LCAYAWDDE--------PV-----KLWDRTEQ 50 ID+ET PL I A+A PV + + Sbjct: 379 IDLETTGLDPLRD----------EIVGWAIAWAAQHGQPGRAVYLPVLGPPGSV--LLDG 426 Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 +A+ L L + + N F+ + +K + I +++ L Sbjct: 427 TAVVQTLKPILENPQCQLINQNVKFDLLAMRK---VGIRPATIGLDTMVGDYL-----LD 478 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE-- 168 + N K + S + + + EY D E Sbjct: 479 AGARSHNLEVLGQKYLSAATI-----PISDLLGSGKNQKTMNQIEIERVAEYATEDAELV 533 Query: 169 ------ATRELFKR-LIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 +L + L L + E+ L + + +G ++D+ + + + ++ +L Sbjct: 534 VRMAPIIESQLQEAGLWKLYDEVEKPLIPVLADMEFKGIKVDVPELERQSQELSITLARL 593 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 +I +L + LR LF + + ++ + LA L Sbjct: 594 MSEIHELAGREF-NIDSPMQLRKILFEELKLPVQKKTK--TGPSTDQEVLELLAPLHPLP 650 Query: 281 RLASSGSAILKL-----NTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + + KL + L V GR+ + A+ TGR S QN+P + Sbjct: 651 AKITEHRHLTKLKGTYLDALPLLVHPQSGRIHTSFNQVVAA-TGRLSSSDPNLQNIPIRT 709 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIA 393 +R ++ +LV AD + IE R+LA + Sbjct: 710 ------------------------PEGSRIRRAFVSCDPEWRLVCADYSQIELRMLAHFS 745 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---GGAKVFKT 450 + + AF +GEDI+ A+ ++ V+ + R I K + + Y G Sbjct: 746 QDPALVSAFEHGEDIHRLVAAQVHQVALEDVTSDMRRIAKAVNFGVMYGQSPYGLSAALG 805 Query: 451 MASHCG-LDLQQFSQNVKSTSTFEDWEQAE-----------------------SHHLWMQ 486 ++ + ++ +TF + E + Sbjct: 806 ISREAATTFIDEYFTRYAGVTTFMENVLDECLATGYARTILGRRRPIEGVRGPRERNRNR 865 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + G+A +L+K A H Sbjct: 866 NMAERTGINTVIQGSAADLIKMAMIRVHHR 895 >gi|228954856|ref|ZP_04116876.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804845|gb|EEM51444.1| DNA polymerase I [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 891 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPKLEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|229072089|ref|ZP_04205298.1| DNA polymerase I [Bacillus cereus F65185] gi|229081839|ref|ZP_04214331.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228701427|gb|EEL53921.1| DNA polymerase I [Bacillus cereus Rock4-2] gi|228711023|gb|EEL62989.1| DNA polymerase I [Bacillus cereus F65185] Length = 891 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPKLEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVKKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|219668497|ref|YP_002458932.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] gi|219538757|gb|ACL20496.1| DNA polymerase I [Desulfitobacterium hafniense DCB-2] Length = 873 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 77/492 (15%), Positives = 152/492 (30%), Gaps = 65/492 (13%) Query: 77 RILFKKTLGIDIPSKRWICTSVL-ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 R+ F + L K+ + VL + L+ L + + +L K Sbjct: 370 RLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLEL 429 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 K I A A + K +E L L + E L + + Sbjct: 430 VKEYIPGAGEFANLAEEASALAQVADSYKETLE-ELGLSALL---HEMEEPLSPILAEME 485 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 +G +D+ + + + E ++L+++I + L LF G+ + Sbjct: 486 KQGIAVDVQRLQEFGRELTVELQRLEQEIYADAGETF-NINSPQQLGHILFEKLGLPPMK 544 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ T L + +L+ S +N L + GR+ T Q Sbjct: 545 KTKTGYSTDADTLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHE-GRVHTTFQ-Q 602 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371 + TGR S QN+P + +R Sbjct: 603 TVTATGRLSSTEPNLQNIPIR------------------------LELGRLLRKVFTPTQ 638 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G L+ AD + IE R+LA + ++ ++F+ +D++ T ++ F P+ +V+K+ R Sbjct: 639 EGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRK 698 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 K + L Y G + ++ + + + + ++ Sbjct: 699 AKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVR 758 Query: 488 QY---------------------PEFAVKDKLIGTACELVKKAW----RAKHQGVLQLWK 522 A+ + GTA +++K A A L Sbjct: 759 TLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYRANLLL 818 Query: 523 DLTEGFACVVQE 534 + + V Sbjct: 819 QVHDELVIEVAP 830 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 +R +G ++ N +Q + DI+ M + +++L VHDE+V E V Sbjct: 777 QRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEV 836 Query: 645 GTLCS 649 + Sbjct: 837 AKVVR 841 >gi|288553689|ref|YP_003425624.1| DNA polymerase I [Bacillus pseudofirmus OF4] gi|288544849|gb|ADC48732.1| DNA polymerase I [Bacillus pseudofirmus OF4] Length = 875 Score = 227 bits (578), Expect = 6e-57, Method: Composition-based stats. Identities = 84/485 (17%), Positives = 166/485 (34%), Gaps = 70/485 (14%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFS 119 +DET ++ ++ D+ ++A PS S + +A Sbjct: 361 KDETKKKWLLDAKRGVVVL---GWKDVLLDGVDFDLLMASYLLDPSHSSHDLSDIATRKG 417 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 + +E A + KG+ P A H+ K +E + ++ Sbjct: 418 AKSIQADE-----AVYGKGAKRKVPETDVLAEHLVRKANVIYELKERMEEELKKNEQFEL 472 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 D E L ++ + G ++D+D + + E +A +L++ I + + Sbjct: 473 FKDLEMPLSVVLGRMETEGVKVDIDQLKAMGEDLASRLAELEKHIHEHAGVSF-NINSPK 531 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----- 294 L LF G+ ++ ++ S + +LA+D + R + KLN+ Sbjct: 532 QLGEVLFEKLGLPVIKKTKTG--YSTSADVLEKLAEDHEIIRHILHYRQLGKLNSTYIEG 589 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + ++ ++TGR S QN+P + Sbjct: 590 LVKVTHKGTSKIHTRFN-QALTQTGRLSSTDPNLQNIPIR-------------------- 628 Query: 354 ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R I G K++ AD + IE RVLA IA ++ I AF D++ T Sbjct: 629 ----LEEGRKIRKAFIPSEEGWKILAADYSQIELRVLAHIAQDEKLITAFKEDMDVHTKT 684 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 F+ + V+ R K + + Y G ++ ++++ + + Sbjct: 685 AMDVFHVSEEDVTSMMRRSAKAVNFGIVYGISDYGLSQSLGITRKEAAKFIERYLASYPN 744 Query: 469 TSTFEDWEQAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVK 507 + + + E+ L + PE A+ + GTA +++K Sbjct: 745 VAEYMERIIEEARENGYVSTLLNRRRYLPELTSRNFNQRSFAERTAMNTPIQGTAADIIK 804 Query: 508 KAWRA 512 KA Sbjct: 805 KAMVE 809 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 16/133 (12%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + R V +R + + + + YL TS+ + Sbjct: 726 ITRKEAAKFIERYLASYPNVAEYMERIIEEARENGYVSTLLNRR---RYLPELTSRNFNQ 782 Query: 591 RTYGGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFS 643 R++ + N +Q + DI+ + M + ++L VHDE++ E P Sbjct: 783 RSFAERTAMNTPIQGTAADIIKKAMVEMALRLEEANLKSRLLLQVHDELIFEVPP----- 837 Query: 644 VGTLCSLMTKNPS 656 + +M P Sbjct: 838 -EEVDEMMKIVPE 849 >gi|300508400|pdb|3HT3|A Chain A, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp gi|300508401|pdb|3HT3|D Chain D, Crystal Structure Of Fragment Dna Polymerase I From Bacillus Stearothermophilus V713p Mutant Bound To G:dctp Length = 579 Score = 226 bits (577), Expect = 6e-57, Method: Composition-based stats. Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 52 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 109 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 110 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 165 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 166 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 220 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 221 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 279 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V + T+ ++TGR S QN+P + Sbjct: 280 YRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 332 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 333 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 375 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 376 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEA 435 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 436 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 495 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 496 NTPIQGSAADIIKKAMIDLN 515 Score = 41.6 bits (96), Expect = 0.37, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 388 TAMDIFQVSEDEVTPNMRRQAKAVNFGIPYGISDYGLAQNLNISRKEAAEFIERYFESFP 447 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 448 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 507 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 508 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 550 >gi|290581196|ref|YP_003485588.1| DNA polymerase I [Streptococcus mutans NN2025] gi|254998095|dbj|BAH88696.1| DNA polymerase I [Streptococcus mutans NN2025] Length = 878 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 86/522 (16%), Positives = 168/522 (32%), Gaps = 72/522 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDL-LQYLRDETVMCVAHNSLFER-ILFKKTLGIDIP 89 + AW D ++ T+ S + DL + L + F+R + LGID+ Sbjct: 336 MIGLAWGD-DQAIYATTDTSLLTHDLFKEALSKP--IKT---YDFKRGKVLLSHLGIDLL 389 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + + S LA+ N L + + KG+ + P Sbjct: 390 TASF--DSRLAKYLLSTVENNNISTIARLYTDLPLETDDDV----YGKGAKRAIPEKNVL 443 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 +H+ + + +L L + E L + + G + + + + Sbjct: 444 LSHLAKKISVLLASEEPMRQKLSANDQLDLLFEMELPLANVLAKMEIAGISVRKETLQDM 503 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSN 269 + E + L ++I L + L + LF G+ L + + Sbjct: 504 ERANEIELQALTQEIYDLAGEAF-NINSPKQLGVILFEKLGLPLSATKKTKTGYSTAVDV 562 Query: 270 ITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +LA + I KL + L +++S DG++ ++TGR S Sbjct: 563 LERLAHRSPIVAKILEYRQIAKLQSTYIIGLQDSISFDGKIHTRY-LQDLTQTGRLSSVD 621 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAG 383 QN+P +R + + L+ +D + Sbjct: 622 PNLQNIP------------------------VRLEQGRLIRKAFVPEWKESVLLSSDYSQ 657 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 658 IELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIERPEDVTPNDRRNAKAVNFGVVYG 717 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQ 477 G A ++ + + + D Sbjct: 718 ISDFGLANNLGISRKAAKNYIETYFERYPGIKNYMDRVVREARDKGYVETLFHRRRELPD 777 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + G+A +++K A Q + + Sbjct: 778 INSRNFNIRSFAERTAINSPIQGSAADILKVAMIHLDQALKK 819 >gi|86740326|ref|YP_480726.1| DNA polymerase I [Frankia sp. CcI3] gi|86567188|gb|ABD10997.1| DNA polymerase I [Frankia sp. CcI3] Length = 945 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 89/543 (16%), Positives = 164/543 (30%), Gaps = 72/543 (13%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D AH+ + +D+P + LA LP S A L + Sbjct: 429 LADPNQPKAAHDVKGPMLALT---ELDLPLAGVTSDTALAAYLALPGQRSFDLADLVARY 485 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + G S D A+ V+A D + R L Sbjct: 486 LHRDLSADPVPGGQQLTLDG---SGEADQAHADAVRARACLELADALDADLERRSAATL- 541 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 L D E L + + G +D + + +LQ+ E + ++ + Sbjct: 542 -LRDIELPLVTVLAGMERAGIAVDSEHLTELQKHYGGEVSAVAAQAHEIVGRPF-NLGSP 599 Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NT 294 L+ LF G+ + + + D L + + +L ++ Sbjct: 600 KQLQQILFDELGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDVARLKTVVDS 659 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + GR+ T A+ TGR S QN+P + Sbjct: 660 LIPMIDDIGRIHTTFNQTIAA-TGRLSSADPNLQNIPIRT-------------------- 698 Query: 355 DPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G L+ AD + IE R++A ++G++ I+AF +GED++ Sbjct: 699 ----AEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFVA 754 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 A+AF P+ +V E R K M L Y G A + + Sbjct: 755 AEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGV 814 Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 F S + + A+ + G+A +++K Sbjct: 815 RDFLRGVVERARKDGYTETILGRRRYLPDLTSDNSQRRQMAERMALNAPIQGSAADIIKI 874 Query: 509 AWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 A + + +L + + + G + R+ + + + Sbjct: 875 AMLGVDRALCAGGYASRLLLQVHDELVLEIAPGEHDAVERLVRAEMTSAYTMSVPLDVSV 934 Query: 563 PSS 565 + Sbjct: 935 GAG 937 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 71/239 (29%), Gaps = 33/239 (13%) Query: 425 SKEQRAIGKVMELALGYQGGAKV------FKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 + E R I + + GY+ + MA G + + S + A Sbjct: 698 TAEGRQIRRAFVVGAGYETLLTADYSQIEMRIMAHLSGD--EGLIEAFGSGEDLHTFVAA 755 Query: 479 ESHHLWMQDQYPEFAVKDK-LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 E+ L + + PE + K + + A G+ G Sbjct: 756 EAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGGVR 815 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQL-MRERTYGGK 596 R V R +L R L D + N+ Q+ R Sbjct: 816 DFLRGVVERAR-----KDGYTETILGRRRYL------PDLTSDNSQRRQMAERMALNAP- 863 Query: 597 LTENIVQAISRDILCEGMKNATKN----GY--DIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + GY ++L VHDE+V E + +V L Sbjct: 864 -----IQGSAADIIKIAMLGVDRALCAGGYASRLLLQVHDELVLEIAPGEHDAVERLVR 917 >gi|89894086|ref|YP_517573.1| hypothetical protein DSY1340 [Desulfitobacterium hafniense Y51] gi|89333534|dbj|BAE83129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 873 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 77/492 (15%), Positives = 152/492 (30%), Gaps = 65/492 (13%) Query: 77 RILFKKTLGIDIPSKRWICTSVL-ARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 R+ F + L K+ + VL + L+ L + + +L K Sbjct: 370 RLAFSQLLEDSEVPKQVADSKVLYSLLLNEEIILRGVSLDIGLAAYLINPTRNKFEPLEL 429 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 K I A A + K +E L L + E L + + Sbjct: 430 VKEYIPGAGEFANLAEEASALAQVADSYKETLE-ELGLSALL---HEMEEPLSPILAEME 485 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 +G +D+ + + + E ++L+++I + L LF G+ + Sbjct: 486 KQGIAVDVQRLQEFGRELTVELQRLEQEIYADAGETF-NINSPQQLGHILFEKLGLPPMK 544 Query: 256 MSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFY 312 ++ T L + +L+ S +N L + GR+ T Q Sbjct: 545 KTKTGYSTDADTLEELRDQHSIVERVLDYRQLSKLMSTYVNGLLAQIHE-GRVHTTFQ-Q 602 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-S 371 + TGR S QN+P + +R Sbjct: 603 TVTATGRLSSTEPNLQNIPIR------------------------LELGRLLRKVFTPTQ 638 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G L+ AD + IE R+LA + ++ ++F+ +D++ T ++ F P+ +V+K+ R Sbjct: 639 EGWVLLSADYSQIELRILAHYSQDEVLCESFSLNQDVHTRTASEVFGIPMAEVTKDMRRK 698 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 K + L Y G + ++ + + + + ++ Sbjct: 699 AKAVNFGLIYGLTDFGLGRDLGVPRKEAKTYIETYFHRYEGVKRYLEEIVVKAKEEGQVR 758 Query: 488 QY---------------------PEFAVKDKLIGTACELVKKAW----RAKHQGVLQLWK 522 A+ + GTA +++K A A L Sbjct: 759 TLLNRLRRIPELRHPNRVQRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYRANLLL 818 Query: 523 DLTEGFACVVQE 534 + + V Sbjct: 819 QVHDELVIEVAP 830 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSV 644 +R +G ++ N +Q + DI+ M + +++L VHDE+V E V Sbjct: 777 QRQFGERIAMNTPIQGTAADIMKLAMLGVAEALKPYRANLLLQVHDELVIEVAPEDLEEV 836 Query: 645 GTLCS 649 + Sbjct: 837 AKVVR 841 >gi|254518429|ref|ZP_05130485.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226912178|gb|EEH97379.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 870 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 86/558 (15%), Positives = 183/558 (32%), Gaps = 108/558 (19%) Query: 11 RSPQPLPKVGVWAYAEQAVITL-CA--YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVM 67 S L K ++ E V + Y+ + + L L + +E + Sbjct: 333 YSEIELSK--IYLSNEDKVYLINFKNIYSVNKDEANLA-----------LKAIMENEELT 379 Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 + H+ + K +DI K + + +A + S+ + L +E+L + Sbjct: 380 KIIHDGKSLVTVLNK---LDISIKTFEFDTAIAAYL-IDSARSSYDLLTLINEYLGEDIT 435 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 G+ I +G ++ D + + E E L Sbjct: 436 GEGEI---LEGKVNFKLRDIYELLKKKIEEEKMEEL----------------YYKVEHPL 476 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + ++ G+ I+ +++ L +E + +++I L + + L LF Sbjct: 477 IFVLSSMEALGFNINKNMLDDLAIKFKEEITRTEKEIYDLAEEEF-NINSPKQLGKILFE 535 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSD 302 + ++ ++ + + +L + + I KLN+ L + SD Sbjct: 536 KLDLPVIKKTK--TGYSTNAEVLEKLQDKHEIIPKITYYRQITKLNSTYVEGLKNVIDSD 593 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 G + + + TGR S QN+P + Sbjct: 594 GHIHSSFN-QTVTTTGRLSSTEPNLQNIPIKY------------------------EMGR 628 Query: 363 CVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I G L+ D + IE RVLA ++ ++ I AF + DI+ T ++ F PI Sbjct: 629 EIRKVFIPDEEGDILLSCDYSQIELRVLAHMSNDENMIDAFKHHSDIHTKTASEVFKVPI 688 Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474 + V+ R+ K + + Y ++ ++ + + + D Sbjct: 689 EDVTSLMRSRAKAVNFGIVYGISDFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVM 748 Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA---- 512 + +S + ++ A+ + G+A +++K A Sbjct: 749 QEAKENGYVLTILNRRRFIPEIKSSNRIVKALGERLAMNAPIQGSAADIIKLAMVNVYNK 808 Query: 513 ------KHQGVLQLWKDL 524 K +LQ+ +L Sbjct: 809 LKEKELKSTMILQVHDEL 826 Score = 40.9 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 61/192 (31%), Gaps = 12/192 (6%) Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + S E+ A HH + + K + + +A +A + G++ ++ Sbjct: 656 LAHMSNDENMIDAFKHHSDIHTKTASEVFKVPIEDVTSLMRSRA-KAVNFGIV---YGIS 711 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATS 585 + A + + K + V+ ++ Y + Sbjct: 712 DFSLSQDLHITKKEASEYMEIYFERYPKIKGYLDSVMQEAKENGYVLTILNRRRFIPEIK 771 Query: 586 QLMRE-RTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETP 637 R + G +L N +Q + DI+ M N + ++L VHDE++ Sbjct: 772 SSNRIVKALGERLAMNAPIQGSAADIIKLAMVNVYNKLKEKELKSTMILQVHDELILNVK 831 Query: 638 DTPYFSVGTLCS 649 + V + Sbjct: 832 ENELEEVKQIVK 843 >gi|225867770|ref|YP_002743718.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] gi|225701046|emb|CAW97839.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus] Length = 886 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 84/576 (14%), Positives = 182/576 (31%), Gaps = 84/576 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 L +AW ++ +++ + S + ++L + + ++ + F+R + LG+D+P+ Sbjct: 344 LIGFAWGNQG-QIYASADISLLTTELFKKVLEQPIATY----DFKRSKVLLSHLGLDLPA 398 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA + + + KG + P Sbjct: 399 ASY--DARLANYLLSTVEDNEMATLARLYTTIPLDTD----EVVYGKGVKRAVPDKAVLL 452 Query: 151 NHVQAWQLFGEYCKRDVEATR---ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + ++ +D E L + + G ++ D + Sbjct: 453 GHL---ARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLAKMEIEGIAVNQDSLQ 509 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ E ++L ++I ++ + + L + LF + L + + Sbjct: 510 EMAEQNKVVIEELTQEIYEMAGEVF-NINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAV 568 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +LA + I KL + L + + +DGR+ ++TGR S Sbjct: 569 DVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRY-LQDLTQTGRLSS 627 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381 QN+P + +R S+ L+ +D Sbjct: 628 VDPNLQNIPIR------------------------LEQGRLIRKAFTPSHDDAVLLSSDY 663 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440 + IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Sbjct: 664 SQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIV 723 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G + + + + + + Sbjct: 724 YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKDYMERVVREAKDKGYVETLFKRRRQL 783 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 S ++ A+ + G+A +++K A Q ++ + Sbjct: 784 PDINSRQFNVRSFAERTAINSPIQGSAADILKIAMINLDQALV--------AGGFETKML 835 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + V VP + K V + S+ L Sbjct: 836 LQVHDEIVLEVPNHELAAVKELVKETMESAVNLAVP 871 >gi|168483664|ref|ZP_02708616.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|168486718|ref|ZP_02711226.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|168492319|ref|ZP_02716462.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] gi|172042928|gb|EDT50974.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1873-00] gi|183570324|gb|EDT90852.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC1087-00] gi|183573486|gb|EDT94014.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC0288-04] Length = 877 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-LQDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|229152782|ref|ZP_04280965.1| DNA polymerase I [Bacillus cereus m1550] gi|228630602|gb|EEK87248.1| DNA polymerase I [Bacillus cereus m1550] Length = 891 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|307706914|ref|ZP_07643715.1| DNA polymerase I [Streptococcus mitis SK321] gi|307617706|gb|EFN96872.1| DNA polymerase I [Streptococcus mitis SK321] Length = 877 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 88/596 (14%), Positives = 194/596 (32%), Gaps = 97/596 (16%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A+++ D KL+ + + + + ++T + V ++ ++L G+D+ + Sbjct: 337 FAWSYGD---KLYATDKLELLQEPIFKDFLEKTPLRV-YDFKKAKVLLNH-FGVDLQAPA 391 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH 152 + S LA+ + +++ + KG + P Sbjct: 392 F--DSRLAKYLLSTVEDNEIATIASLYGQTYLVDD----ETFYGKGVKKAIPER------ 439 Query: 153 VQAWQLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRID 202 + F E+ R +E L ++L L D E+ L + + G + Sbjct: 440 ----EKFLEHLARKLAVLIETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVK 495 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK 262 + +L++Q +KL ++I +L + L + LF G+ L + Sbjct: 496 KETLLEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTG 554 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRT 317 + + +LA + + I K+ + L + + +DG++ ++T Sbjct: 555 YSTAVDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQT 613 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKL 376 GR S QN+P +R + L Sbjct: 614 GRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVL 649 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVM 435 + +D + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + Sbjct: 650 LSSDYSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAV 709 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------------- 474 + Y G + + + + + D Sbjct: 710 NFGVVYGISDFGLSNNLGISRKEAKTYIDTYFERFPGIKNYMDEVVREARDKGYVETLFK 769 Query: 475 ----WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFAC 530 S + ++ A+ + G+A +++K A + ++ Sbjct: 770 RRRELPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGY 821 Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + + V VP+ + K+ V + + +L + + ++ Sbjct: 822 QTKMLLQVHDEIVLEVPKSELTEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|206969813|ref|ZP_03230767.1| DNA polymerase I [Bacillus cereus AH1134] gi|206735501|gb|EDZ52669.1| DNA polymerase I [Bacillus cereus AH1134] Length = 877 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPKLEVVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 576 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 577 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 630 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 631 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 671 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 731 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 791 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 792 AMNTPIQGTAADIIKKAM 809 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 862 Query: 663 LKAE 666 LK + Sbjct: 863 LKVD 866 >gi|300781297|ref|ZP_07091151.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] gi|300533004|gb|EFK54065.1| DNA-directed DNA polymerase I [Corynebacterium genitalium ATCC 33030] Length = 887 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 74/371 (19%), Positives = 132/371 (35%), Gaps = 67/371 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +D E L + + D G +D+D++ + + IAQ+ ++ L D + Sbjct: 479 YADLELPLVTILAEMEDTGIAVDMDVLEEQLKEIAQKVTDAEDTARSLVDEPDLNLSSPK 538 Query: 240 ALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 L + LF + ++ TL + H + QL +L S+ Sbjct: 539 QLSVVLFDKLELPKTKKTKTGYSTAAKEIETLAAKNPHPFLDQLLAHREWQKLKST---- 594 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + V DGR+ T AS TGR S QN+P + + Sbjct: 595 --IEGLIKTVHDDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEA------------- 638 Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +RS +G + L+ AD + IE RV+A ++ + I+A+ GED+ Sbjct: 639 -----------GRRIRSAFTVGDGYECLLTADYSQIEMRVMAHLSEDPGLIEAYKEGEDL 687 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++ F+ PID V+ E R K M L Y G + A ++ + Q Sbjct: 688 HNFVGSRVFDVPIDDVTPELRRRVKAMSYGLVYGLSAYGLSNQLGIPAGEAKKIMESYFQ 747 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + D ++ ++ A+ + GTA Sbjct: 748 RFGGVKRYLDEVVEQARRDGYTSTVFGRRRYLPELTSDNRVARENAERAALNAPIQGTAA 807 Query: 504 ELVKKAWRAKH 514 +++K A Sbjct: 808 DIIKVAMIRVD 818 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 12/123 (9%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 A+++ KR + V+ +RR Y+ V G YL TS R + Sbjct: 737 EAKKIMESYFQRFGGVKRYLDEVVEQARRDGYTSTVFGRRRYLPELTSDNRVARENAERA 796 Query: 598 TENI-VQAISRDILCEGMKNATKNGYD----------IVLTVHDEIVSETPDTPYFSVGT 646 N +Q + DI+ M D ++L VHDE+V E V Sbjct: 797 ALNAPIQGTAADIIKVAMIRVDAALNDASRDQPFQSRVLLQVHDELVVEIAPGELEQVQA 856 Query: 647 LCS 649 + Sbjct: 857 IVE 859 >gi|22536572|ref|NP_687423.1| DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|25010498|ref|NP_734893.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76786985|ref|YP_329109.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77406448|ref|ZP_00783505.1| DNA polymerase I [Streptococcus agalactiae H36B] gi|77411656|ref|ZP_00787996.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|22533407|gb|AAM99295.1|AE014209_8 DNA polymerase I [Streptococcus agalactiae 2603V/R] gi|23094851|emb|CAD46069.1| DNA polymerase I [Streptococcus agalactiae NEM316] gi|76562042|gb|ABA44626.1| DNA polymerase I [Streptococcus agalactiae A909] gi|77162300|gb|EAO73271.1| DNA polymerase I [Streptococcus agalactiae CJB111] gi|77174950|gb|EAO77762.1| DNA polymerase I [Streptococcus agalactiae H36B] Length = 880 Score = 226 bits (577), Expect = 7e-57, Method: Composition-based stats. Identities = 73/494 (14%), Positives = 155/494 (31%), Gaps = 69/494 (13%) Query: 57 LLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L + L + + F+R + ID+P + + LA+ + Sbjct: 358 LQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAF--DTRLAKYLLSTTEDNLVSTI 415 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174 +L + + KG+ + P H+ + ++L Sbjct: 416 ARLYTNLPLDTDDAV----YGKGAKRAIPEKTRFLEHLAK--KVKVLVDSEANIMQQLKA 469 Query: 175 -KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ L + E+ L + + RG ++ + + ++ + + L ++I +L Sbjct: 470 NEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF G+ + + + + +LA L I KL Sbjct: 529 NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + DG++ ++TGR S QN+P Sbjct: 589 STYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSSSDPNLQNIP----------------- 630 Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + S L+ +D + IE RVLA I+ ++ I AF G D Sbjct: 631 -------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGAD 683 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F + V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTY 743 Query: 463 SQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQ 515 A +++K A + Sbjct: 804 AADILKIAMINLDR 817 >gi|332077340|gb|EGI87801.1| DNA polymerase I family protein [Streptococcus pneumoniae GA41301] Length = 877 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-LQDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|303242091|ref|ZP_07328582.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] gi|302590385|gb|EFL60142.1| DNA polymerase I [Acetivibrio cellulolyticus CD2] Length = 897 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 88/572 (15%), Positives = 183/572 (31%), Gaps = 75/572 (13%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 TE + D + H+ F I++ K GI++ + T + A Sbjct: 366 LTENEFL-EGFKSIFEDGEIKKYGHDLKNF--IVYLKQNGIELNGVAF-DTMIGAYIINP 421 Query: 106 PSSLKNACL--ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 A + ++ +EE F N V + Sbjct: 422 SRETYTISELAADFLNTNVKPIEEMAGKGKSFL---PFGSMDVEELKNVVGLYPEIIYKA 478 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + ++ +L E L + + G++I+++ + + + ++ +L Sbjct: 479 MKKIDDKLNENDQLNLYYKIELPLVRVLADMEFYGFKININELTVISRQLDEKINQLTLK 538 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 I +L + L + LF + ++ ++ + +LA+ + Sbjct: 539 IYELAGEEF-NINSPKQLGVVLFEKLELPIIKKTK--TGYSTDAEVLEELAEKHEIVSNI 595 Query: 284 SSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 ++KL + L ++ G++ + + TGR S QN+P Sbjct: 596 LEYRQLVKLKSTYIEGLMAVINPHTGKIHSSFN-QTVTVTGRISSTEPNLQNIP------ 648 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396 +R + +G KLV AD + IE RVLA I ++ Sbjct: 649 ------------------IKLEMGRNIRKAFVPCDGNYKLVDADYSQIELRVLAHITDDE 690 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 I AF N EDI+ +T +K F P ++V+ R+ K + + Y G +K Sbjct: 691 NMIGAFNNNEDIHTSTASKVFGVPNEEVTSALRSKAKAVNFGIVYGIGDFSLSKDLGITR 750 Query: 453 SHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPE 491 + + + + + ++ + ++ Sbjct: 751 KEARNYIDGYLDKYANVRKYMHDIVAQGKEFGFVTTMFNRRRYLPELKASNFNVRSFGER 810 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A+ + G+A +++K A H + + + L V + I A ++ Sbjct: 811 IAMNTPIQGSAADIIKIAMVMVHSELNR--RQLKSRLILQVHDELIIEAHESELEEVTMI 868 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTA 583 + + L + DVK S+ T Sbjct: 869 LKESMENATALKVPLSV---DVKSGNSWYETK 897 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 7/64 (10%) Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFS 643 R++G ++ N +Q + DI+ M ++L VHDE++ E ++ Sbjct: 805 RSFGERIAMNTPIQGSAADIIKIAMVMVHSELNRRQLKSRLILQVHDELIIEAHESELEE 864 Query: 644 VGTL 647 V + Sbjct: 865 VTMI 868 >gi|149023472|ref|ZP_01836061.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] gi|147929795|gb|EDK80785.1| DNA polymerase I [Streptococcus pneumoniae SP23-BS72] Length = 877 Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 67/423 (15%), Positives = 141/423 (33%), Gaps = 70/423 (16%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARR 542 A+ + G+A +++K A + ++ ++ + + V + + ++ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKK 847 Query: 543 VAN 545 + Sbjct: 848 LVK 850 >gi|77413947|ref|ZP_00790121.1| DNA polymerase I [Streptococcus agalactiae 515] gi|77159983|gb|EAO71120.1| DNA polymerase I [Streptococcus agalactiae 515] Length = 880 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 73/524 (13%), Positives = 162/524 (30%), Gaps = 76/524 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSD--LLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 L AW + T ++ + + L + ++ ++L + +I Sbjct: 338 LIGIAWGNSD--TIYATSDVSLLQEALFKKALSKP--IKT-YDFKRSKVLLNRF---NID 389 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + LA+ + +L + + KG+ + P Sbjct: 390 LPEPAFDTRLAKYLLSTTEDNLVSTIARLYTNLPLDTDDAV----YGKGAKRAIPEKTRF 445 Query: 150 ANHVQAWQLFGEYCKRDVEATRELF--KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + ++L ++ L + E+ L + + RG ++ + + Sbjct: 446 LEHLAK--KVKVLVDSEANIMQQLKANEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLN 503 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ + + L ++I +L + L LF G+ + + + Sbjct: 504 EMAIENQKVIETLTQEIYELAGQEF-NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAV 562 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +LA L I KL + L + + DG++ ++TGR S Sbjct: 563 DVLERLAPISPLVTKILEYRQITKLQSTYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSS 621 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381 QN+P +R + S L+ +D Sbjct: 622 SDPNLQNIP------------------------VRLEQGRLIRKAFVPSEDNAVLLSSDY 657 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440 + IE RVLA I+ ++ I AF G DI+ +T + F + V+ R K + + Sbjct: 658 SQIELRVLAHISKDEHLIAAFKEGADIHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIV 717 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G + + + + + + Sbjct: 718 YGISDFGLSHNLGIPRKLAKQYIDTYFERYPGIKNYMETVVREAKDKGYVETLFHRRRSL 777 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + G+A +++K A + + + Sbjct: 778 PDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDRVLYK 821 >gi|229112052|ref|ZP_04241595.1| DNA polymerase I [Bacillus cereus Rock1-15] gi|228671375|gb|EEL26676.1| DNA polymerase I [Bacillus cereus Rock1-15] Length = 891 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|227890554|ref|ZP_04008359.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] gi|227867492|gb|EEJ74913.1| DNA polymerase I [Lactobacillus salivarius ATCC 11741] Length = 892 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 84/519 (16%), Positives = 170/519 (32%), Gaps = 70/519 (13%) Query: 28 AVITLCAYAWDDEPV--KLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 A I + DD+ + D ++ + L + V + + + + LG Sbjct: 344 AEIIGFSIKIDDKYLVSDDIDLLKK----KQIKNLLESDEVEVDLFDGKRQYVGLNR-LG 398 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + +L L +S + L L +H E I + KG+ + P Sbjct: 399 VTL--SKINFDLLLVSYL-LDNSENSNDLGLLAQQHEYYDVESDEQI--YGKGAKHAVPK 453 Query: 146 DCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 D H+ K + E ++L + ER L ++ + G ++D + Sbjct: 454 DKEVLFEHLVRKVKAINNLKEKLFNELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSN 513 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTL 261 + +Q + + +L+++I + L + LF + ++ ++ T Sbjct: 514 RLETMQSELKERLSELEQEIYNEAGEEF-NLNSPKQLGVILFEKLKLPVIKKTKTGYSTA 572 Query: 262 KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRW 320 +L D IL + + L + VS DG+ + TGR Sbjct: 573 VGVLEQLRGMSPIVDNILQYRQLAKIQSTYIEGLLKVVSKKDGKAHTRYT-QTLTSTGRL 631 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P +R + S G ++ + Sbjct: 632 SSVDPNLQNIP------------------------VRLEEGRKIRQAFVPSHPGWEIFSS 667 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELA 438 D + IE RVLA I+ + +AF G DI+ +T + FN D+V+ R K + Sbjct: 668 DYSQIELRVLAHISKDKNMQEAFKEGMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFG 727 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------------- 475 + Y G ++ + + + + Sbjct: 728 IVYGISDYGLSQNIGISRKQAKQFIDTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRR 787 Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 +S + ++ A+ + G+A +++K A Sbjct: 788 YLPDIKSRNFNLRSFAERTAMNSPIQGSAADIIKVAMIN 826 >gi|225857894|ref|YP_002739404.1| DNA polymerase I [Streptococcus pneumoniae 70585] gi|225720032|gb|ACO15886.1| DNA polymerase I (POL I) [Streptococcus pneumoniae 70585] Length = 877 Score = 226 bits (576), Expect = 8e-57, Method: Composition-based stats. Identities = 67/423 (15%), Positives = 141/423 (33%), Gaps = 70/423 (16%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARR 542 A+ + G+A +++K A + ++ ++ + + V + + ++ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALVAGGYQTKMLLQVHDEIVLEVPKSELVEIKK 847 Query: 543 VAN 545 + Sbjct: 848 LVK 850 >gi|160934851|ref|ZP_02082237.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] gi|156866304|gb|EDO59676.1| hypothetical protein CLOLEP_03726 [Clostridium leptum DSM 753] Length = 857 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 72/396 (18%), Positives = 131/396 (33%), Gaps = 64/396 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E L + + + G+ +D + + E + E + L + I + + Sbjct: 456 LEEMEIPLAQVLARMENIGFLVDGESIRVYGERLETEIEALQKQIYEEVGYEF-NINSPK 514 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF+ G+ ++ T IL A +L+L+ + + Sbjct: 515 QLGDALFVKLGLPSGKKTKTGYSTNAEILEKLRYDHPAVELVLHYRTLTKLKSTYCEGML 574 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + + DGR+ +RTGR S QN+P + Sbjct: 575 KVIGPDGRIHSNFN-QTETRTGRISSTEPNLQNIPVRT---------------------- 611 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +A G LV AD + IE RVLA IA ++ IKAF + EDI+ T ++ Sbjct: 612 --ELGRELRKFFLAKEGWVLVDADYSQIELRVLAHIAHDENMIKAFQDKEDIHTITASQV 669 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P + V+ R+ K + + Y GA K + + + Sbjct: 670 FGMPPEMVTPLMRSRAKAVNFGIVYGIGAFSLSKDINVSRKEAQRYIDDYLTLYSGVDRY 729 Query: 473 E---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + + ++ A + GTA +++K A Sbjct: 730 MKEVVEKAKEDGYVETLFHRRRYLPELTASNFNLRAFGERVARNMPIQGTAADIIKIAMV 789 Query: 512 AKHQG----------VLQLWKDLTEGFACVVQEGGS 537 + +LQ+ +L E + Sbjct: 790 RVDRRLKRENMRARLILQVHDELIVEAPEDEAEQAA 825 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 54/138 (39%), Gaps = 13/138 (9%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A+R + + R + V+ ++ Y + YL T+ R +G ++ Sbjct: 711 EAQRYIDDYLTLYSGVDRYMKEVVEKAKEDGYVETLFHRRRYLPELTASNFNLRAFGERV 770 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 N+ +Q + DI+ M + ++L VHDE++ E P+ + Sbjct: 771 ARNMPIQGTAADIIKIAMVRVDRRLKRENMRARLILQVHDELIVEAPEDEA---EQAARI 827 Query: 651 MTKNPSWAKGL--PLKAE 666 +T+ A L P+ AE Sbjct: 828 LTEEMEGAVSLTVPMVAE 845 >gi|229169313|ref|ZP_04297023.1| DNA polymerase I [Bacillus cereus AH621] gi|228614076|gb|EEK71191.1| DNA polymerase I [Bacillus cereus AH621] Length = 891 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 77/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ + K G+DI + ++A L A Sbjct: 370 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 808 NTPIQGSAADIIKKAM 823 >gi|229129871|ref|ZP_04258837.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] gi|229147147|ref|ZP_04275505.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228636257|gb|EEK92729.1| DNA polymerase I [Bacillus cereus BDRD-ST24] gi|228653562|gb|EEL09434.1| DNA polymerase I [Bacillus cereus BDRD-Cer4] Length = 891 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|126015344|gb|ABN70703.1| DNA polymerase 4 [Salmonella phage SETP7] gi|126015346|gb|ABN70704.1| DNA polymerase 4 [Salmonella phage SETP11] Length = 237 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 11/237 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYL-----RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N +F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171 C LN + K + GKALI RF K + + T H + W F Y K D+ + R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E++K++ S+ E + LDQ INDRG+++D+ L E + + +++L E+ + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAESAIEAVTRHKEELQEEAQR 237 >gi|218232627|ref|YP_002369383.1| DNA polymerase I [Bacillus cereus B4264] gi|218160584|gb|ACK60576.1| DNA-directed DNA polymerase [Bacillus cereus B4264] Length = 877 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 576 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 577 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 630 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 631 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 671 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 731 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 791 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 792 AMNTPIQGTAADIIKKAM 809 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 862 Query: 663 LKAE 666 LK + Sbjct: 863 LKVD 866 >gi|152976969|ref|YP_001376486.1| DNA polymerase I [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025721|gb|ABS23491.1| DNA polymerase I [Bacillus cytotoxicus NVH 391-98] Length = 877 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 85/510 (16%), Positives = 172/510 (33%), Gaps = 99/510 (19%) Query: 53 MPSDLLQY-------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 +P+D+ L+DE + ++ + K G++I + ++A Sbjct: 347 IPTDIALASEAFIKWLKDEEMRKYTFDAKRAIVALK-WKGVEIRGVDF--DLLIAAYL-- 401 Query: 106 PSSLKNACLALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 L A +F + KM+E A+ + KG+ + P A HV Sbjct: 402 ---LDPADTDKDF-RTVAKMKETHAVKSDEEVYGKGAKRAVPAQEIVAEHV--------- 448 Query: 163 CKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 R V ++ + I + E L + + +G ++D + + + + Sbjct: 449 -ARKVHVLYDVKQTFIDELEKNEQYELFINLEMPLACVLADMEVKGVKVDTERLRNMGDE 507 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 +A K+++++I +L + L + LF + ++ ++ S + + Sbjct: 508 LAGRLKEMEQEIYELAGTEF-NINSPKQLGVVLFEKLNLPVIKKTKTG--YSTSADVLDK 564 Query: 273 LAKDLILNRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 L + + KLN+ L ++ ++TGR S Sbjct: 565 LMDHHEIIPKILHYRQLGKLNSTYIEGLLKVVHDESSKIHTRFN-QVLTQTGRLSSTEPN 623 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385 QN+P + +R I S G + AD + IE Sbjct: 624 LQNIPIR------------------------LEEGRKIRQAFIPSQEGWVMYAADYSQIE 659 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RVLA IA + I+AF + DI+ T F D+V+ R K + + Y Sbjct: 660 LRVLAHIAKDKGLIEAFQHDMDIHTKTAMDVFGVEKDEVTANMRRQAKAVNFGIVYGISD 719 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G ++ G ++++ + + D + S Sbjct: 720 YGLSQNLGITRKAAGEFIEKYFASFPGVKEYMDEIVQEAKQKGYVSTLLNRRRYIPEITS 779 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + ++ A+ + G+A +++KKA Sbjct: 780 RNFNVRSFAERTAMNTPIQGSAADIIKKAM 809 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + G ++L VHDE++ E P + L +M Sbjct: 797 IQGSAADIIKKAMIVMADRLEEEGLQARLLLQVHDELIFEVPKEEIEKLEKLVPEVMEHA 856 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 857 IELA--VPLKVD 866 >gi|172058211|ref|YP_001814671.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] gi|171990732|gb|ACB61654.1| DNA polymerase I [Exiguobacterium sibiricum 255-15] Length = 865 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 69/445 (15%), Positives = 136/445 (30%), Gaps = 63/445 (14%) Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 H M + + KG+ P D ++ E V+ + ++ Sbjct: 407 HYMLMAPNEEAV--LGKGAKRLAPADDVLHPYLAEKARMIELLFPKVKEELKANQQFELY 464 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ER L + + G R+D+ + ++Q +A L++ I + Sbjct: 465 ETLERPLSGVLAEMEWTGIRVDVGTLQEMQHDLAGRLHDLEQLIYGEVGEEF-NINSPKQ 523 Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 L + LF + ++ T +L D I+ + L + Sbjct: 524 LGVILFEKMELPAFKKTKTGYSTAADVLEKLRPLHPVIDHIMLYRELQKLQSTYVEGLQK 583 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + DG++ A +TGR S QN+P Sbjct: 584 VIKEDGKIHTRFAQTIA-QTGRLSSVNPNLQNIP------------------------VR 618 Query: 358 GLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + S G L AD + IE RV+A ++ + ++AF + DI+ T + Sbjct: 619 IEEGRKIRKAFVPSEPGWSLYAADYSQIELRVMAHMSEDKTLVQAFLDDADIHTQTASSV 678 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F + V+ R K + + Y G ++ + ++ + F Sbjct: 679 FGVAPNDVTGNMRRQAKAVNFGIIYGISDYGLSQNLNISRKEAQDFIDRYFELFPQIKLF 738 Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D S + ++ A+ + G+A +++KKA Sbjct: 739 MDAAIEKARMNGFVETLMNRRRNIPDINSKNFNLRGFAERTAINTPIQGSAADIIKKAML 798 Query: 512 AKH------QGVLQLWKDLTEGFAC 530 H +L + + Sbjct: 799 DVHAALEQSPLRARLLLQVHDELIF 823 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 9/73 (12%) Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 +Q + DI+ + M + ++L VHDE++ E PD ++ TL M + Sbjct: 785 IQGSAADIIKKAMLDVHAALEQSPLRARLLLQVHDELIFEAPDEELDALKTLVKQAMEQT 844 Query: 655 PSWAKGLPLKAEG 667 +PL+ +G Sbjct: 845 VQ--LSVPLRVDG 855 >gi|312868776|ref|ZP_07728968.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] gi|311095762|gb|EFQ54014.1| DNA-directed DNA polymerase [Lactobacillus oris PB013-T2-3] Length = 885 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 83/520 (15%), Positives = 175/520 (33%), Gaps = 68/520 (13%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 + D L R + + L + L V N+ +I+ LGID+ + + Sbjct: 341 GFVIGDGTTWLVSRDAELLKQAPLKKLLESPAVAKNVFNAK-AQIVGLHRLGIDLRNVDF 399 Query: 94 --ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRA 150 + S L TN + L L ++ + EE + KG+ + P D T Sbjct: 400 DLLLASYLLNTNDNSNDLGQVALEHDY-HEVATDEEV------YGKGAKRAIPDDDQTFY 452 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H+ + + + ++ ++ E L + + G +++ + + Sbjct: 453 THLAQKARAINDLRDPLFKKLDDNQQTPLYTEIEVPLTRVLAAMEITGIKVNSQTLKDMG 512 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILS 266 + + +++ I + T L LF + ++ ++ + + Sbjct: 513 SKLTERLADIEDQIYAAAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEK 571 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 ++ + +D++ R + + L SSD ++ ++TGR S Sbjct: 572 LADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRY-LQTLTQTGRLSSVDPN 630 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIE 385 QN+P +R + S G ++ +D + +E Sbjct: 631 LQNIP------------------------VRLPEGRLIRKAFVPSHEGWQIFSSDYSQVE 666 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ-- 442 RVLA I G+ + F NGEDI+ +T + F+ P D ++ + R K + + Y Sbjct: 667 LRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNFGIVYGIS 726 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH------------------ 482 G A+ S +Q + + + D A + Sbjct: 727 DYGLAQRIHVSRSQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHRRRYLPDIH 786 Query: 483 ---LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A+ + G+A +++K A + + Q Sbjct: 787 AKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQ 826 >gi|149006807|ref|ZP_01830493.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|307126259|ref|YP_003878290.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|147761722|gb|EDK68686.1| DNA polymerase I [Streptococcus pneumoniae SP18-BS74] gi|306483321|gb|ADM90190.1| DNA polymerase I [Streptococcus pneumoniae 670-6B] gi|332076490|gb|EGI86952.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17545] Length = 877 Score = 226 bits (576), Expect = 9e-57, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKSYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|225869715|ref|YP_002745662.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] gi|225699119|emb|CAW92303.1| DNA polymerase I [Streptococcus equi subsp. equi 4047] Length = 886 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 87/539 (16%), Positives = 169/539 (31%), Gaps = 81/539 (15%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL-NFSEHLTKMEEGKALIARFCK 137 LFKK L I + + + VL GL + L N+ + E L + Sbjct: 368 LFKKVLEQPIATYDFKRSKVLLSHLGLDLPAASYDARLANYLLSTVEDNEMATLARLYTT 427 Query: 138 GSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGE 184 S+D+ + L G R V+ + ++ +D E Sbjct: 428 ISLDTDEVVYGKGVKRAVPDKAVLLGHLA-RKVQVLLDSRPVMLDKLAEHEQADLYTDIE 486 Query: 185 RDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 L + + G ++ D + ++ E ++L ++I ++ + + L + Sbjct: 487 LPLANVLAKMEIEGIAVNQDSLQEMAEQNKVVIEELTQEIYEMAGEVF-NINSPKQLGVI 545 Query: 245 LFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAV 299 LF + L + + + +LA + I KL + L + + Sbjct: 546 LFEKMQLPLHLTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYI 605 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 +DGR+ ++TGR S QN+P + Sbjct: 606 MADGRIHTRY-LQDLTQTGRLSSVDPNLQNIPIR------------------------LE 640 Query: 360 ASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R S+ L+ +D + IE RVLA I+G++ I AF G DI+ +T + F Sbjct: 641 QGRLIRKAFTPSHDDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFG 700 Query: 419 TP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + V+ R K + + Y G + + + + + Sbjct: 701 IEKPEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYM 760 Query: 474 DW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + S ++ A+ + G+A +++K A Sbjct: 761 ERVVREAKDKGYVETLFKRRRQLPDINSRQFNVRSFAERTAINSPIQGSAADILKIAMIN 820 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 Q ++ + + V VP + K V + S+ L Sbjct: 821 LDQALV--------AGGFETKMLLQVHDEIVLEVPNHELAAVKALVKETMESAVSLAVP 871 >gi|122920458|pdb|2HVH|A Chain A, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920459|pdb|2HVH|D Chain D, Ddctp:o6meg Pair In The Polymerase Active Site (0 Position) gi|122920465|pdb|2HVI|A Chain A, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|122920466|pdb|2HVI|D Chain D, Ddctp:g Pair In The Polymerase Active Site (0 Position) gi|266618524|pdb|3EZ5|A Chain A, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form). gi|266618525|pdb|3EZ5|D Chain D, Cocrystal Structure Of Bacillus Fragment Dna Polymerase I With Duplex Dna , Dctp, And Zinc (Closed Form) Length = 580 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|148987751|ref|ZP_01819214.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|147926215|gb|EDK77288.1| DNA polymerase I [Streptococcus pneumoniae SP6-BS73] gi|301793347|emb|CBW35710.1| DNA polymerase I [Streptococcus pneumoniae INV104] Length = 877 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|122920421|pdb|2HHW|A Chain A, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation gi|122920422|pdb|2HHW|D Chain D, Ddttp:o6-Methyl-Guanine Pair In The Polymerase Active Site, In The Closed Conformation Length = 580 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 83/500 (16%), Positives = 170/500 (34%), Gaps = 70/500 (14%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + + +L DET +S + K GI++ + + A Sbjct: 53 ETALADPQFVAWLGDETKKKSMFDSKRAAVALK-WKGIELCGVSFD-LLLAAYLLDPAQG 110 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-----WQLFGEYC 163 + + A ++ E + A + KG+ + P + A H+ W+L + Sbjct: 111 VDDVAAAAKMKQY----EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFL 166 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 E R RL L + E+ L + + G ++D + ++ + +A++ +++ Sbjct: 167 D---ELRRNEQDRL--LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQR 221 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I +L + L + LF + ++ ++ T +L + IL+ Sbjct: 222 IYELAGQEF-NINSPKQLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILH 280 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V + T+ ++TGR S QN+P + Sbjct: 281 YRQLGKLQSTYIEGLLKVVRPATKKVHTIFNQALTQTGRLSSTEPNLQNIPIR------- 333 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKI 399 +R + S L+ AD + IE RVLA IA +D + Sbjct: 334 -----------------LEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLM 376 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF DI+ T F D+V+ R K + + Y G A+ Sbjct: 377 EAFRRDLDIHTKTAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEA 436 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + S + ++ A+ Sbjct: 437 AEFIERYFESFPGVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAM 496 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++KKA + Sbjct: 497 NTPIQGSAADIIKKAMIDLN 516 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 19/166 (11%) Query: 501 TACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI--------SARRVANVPRLVMR 552 TA ++ + + + + K + G + + G A Sbjct: 389 TAMDIFQVSEDEVTPNMRRQAKAVNYGIVYGISDYGLAQNLNISRKEAAEFIERYFESFP 448 Query: 553 RHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 KR + ++ +++ Y YL TS+ R++ ++ N +Q + DI+ Sbjct: 449 GVKRYMENIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRSFAERMAMNTPIQGSAADII 508 Query: 611 CEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSL 650 + M + + ++L VHDE++ E P + LC L Sbjct: 509 KKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEE---MERLCRL 551 >gi|149010895|ref|ZP_01832200.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|221230982|ref|YP_002510134.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] gi|147764531|gb|EDK71461.1| DNA polymerase I [Streptococcus pneumoniae SP19-BS75] gi|220673442|emb|CAR67908.1| DNA polymerase I [Streptococcus pneumoniae ATCC 700669] Length = 877 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIMVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 SQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-LQDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|90961464|ref|YP_535380.1| DNA polymerase I [Lactobacillus salivarius UCC118] gi|90820658|gb|ABD99297.1| DNA polymerase I [Lactobacillus salivarius UCC118] Length = 892 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 79/490 (16%), Positives = 160/490 (32%), Gaps = 64/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L + V + + + + LG+ + + +L L +S + L Sbjct: 369 KQIKNLLESDEVEVDLFDGKRQYVGLNR-LGVTL--SKINFDLLLVSYL-LDNSENSNDL 424 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 L +H E I + KG+ + P D H+ K + E Sbjct: 425 GLLAQQHEYYDVESDEQI--YGKGAKHAVPEDKEVLFEHLVRKVKAINNLKEKLFNELEE 482 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + ER L ++ + G ++D + + +Q + + +L+++I Sbjct: 483 NQQLDLYTKIERPLSIILANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF- 541 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ ++ T +L D IL + Sbjct: 542 NLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQST 601 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + VS DG+ + TGR S QN+P Sbjct: 602 YIEGLLKVVSKKDGKAHTRYT-QTLTSTGRLSSVDPNLQNIP------------------ 642 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S G ++ +D + IE RVLA I+ + +AF G DI Sbjct: 643 ------VRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDI 696 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + FN D+V+ R K + + Y G ++ + + Sbjct: 697 HASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYL 756 Query: 464 QNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + +S + ++ A+ + G+A Sbjct: 757 DTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSA 816 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 817 ADIIKVAMIN 826 >gi|300214316|gb|ADJ78732.1| DNA polymerase I [Lactobacillus salivarius CECT 5713] Length = 892 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 79/490 (16%), Positives = 160/490 (32%), Gaps = 64/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L + V + + + + LG+ + + +L L +S + L Sbjct: 369 KQIKNLLESDEVEVDLFDGKRQYVGLNR-LGVTL--SKINFDLLLVSYL-LDNSENSNDL 424 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 L +H E I + KG+ + P D H+ K + E Sbjct: 425 GLLAQQHEYYDVESDEQI--YGKGAKHAVPKDKEVLFEHLVRKVKAINNLKEKLFNELEE 482 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + ER L ++ + G ++D + + +Q + + +L+++I Sbjct: 483 NQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAGEEF- 541 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF + ++ ++ T +L D IL + Sbjct: 542 NLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAKIQST 601 Query: 291 KLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + VS DG+ + TGR S QN+P Sbjct: 602 YIEGLLKVVSKKDGKAHTRYT-QTLTSTGRLSSVDPNLQNIP------------------ 642 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S G ++ +D + IE RVLA I+ + +AF G DI Sbjct: 643 ------VRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKEGMDI 696 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + FN D+V+ R K + + Y G ++ + + Sbjct: 697 HASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFIDTYL 756 Query: 464 QNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + +S + ++ A+ + G+A Sbjct: 757 DTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPIQGSA 816 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 817 ADIIKVAMIN 826 >gi|126015348|gb|ABN70705.1| DNA polymerase 4 [Salmonella phage SETP13] Length = 237 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 126/237 (53%), Gaps = 11/237 (4%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAEQA--VITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M+ L++D ET S L KVG +AYAE I +C YA+D+ PV++WD T+ S MP DL Sbjct: 1 MNLLYLDTETFSEADLKKVGSYAYAEHPTTEIVICTYAFDEGPVQVWDATDGSDMPRDLR 60 Query: 59 QYL-----RDETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + + D + V N +F+R + K G ++ + I T ++A + LP SL Sbjct: 61 RAMLKLQKPDSNLKLVGQNFLMFDRPVIKHCWGFELLVENIIDTMIVAFRHALPGSLAAL 120 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC-TRANHVQAWQLFGEYCKRDVEATR 171 C LN + K + GKALI RF K + + T H + W F Y K D+ + R Sbjct: 121 CEVLNIDASMAKDKRGKALIQRFSKPTPKNYKIRRYTADTHPKEWAEFIAYAKSDITSMR 180 Query: 172 ELFKRLIPL--SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 E++K++ S+ E + LDQ INDRG+++D+ L E + + +++L E+ + Sbjct: 181 EVYKKMPKWGNSEFEDRVLHLDQVINDRGFKVDVALAEAAIEAVTRHKEELQEEAQR 237 >gi|195977329|ref|YP_002122573.1| DNA polymerase I [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974034|gb|ACG61560.1| DNA polymerase I PolA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 899 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 84/576 (14%), Positives = 182/576 (31%), Gaps = 84/576 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 L +AW ++ +++ + S + ++L + + ++ + F+R + LG+D+P+ Sbjct: 357 LIGFAWGNQG-QIYASADISLLTTELFKKVLEQPIATY----DFKRSKVLLSHLGLDLPA 411 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA + + + KG + P Sbjct: 412 ASY--DARLANYLLSTVEDNEMATLARLYTTIPLDTD----EVVYGKGVKRAVPDKAVLL 465 Query: 151 NHVQAWQLFGEYCKRDVEATR---ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 H+ + ++ +D E L + + G ++ D + Sbjct: 466 GHL---ARKVQVLLDSRPVMLDKLAEHEQADLYTDIELPLANVLAKMEIEGIAVNQDSLQ 522 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 ++ E ++L ++I ++ + + L + LF + L + + Sbjct: 523 EMAEQNKVVIEELTQEIYEMAGEVF-NINSPKQLGVILFEKMQLPLHLTKKTKTGYSTAV 581 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +LA + I KL + L + + +DGR+ ++TGR S Sbjct: 582 DVLERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYIMADGRIHTRY-LQDLTQTGRLSS 640 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADL 381 QN+P + +R S+ L+ +D Sbjct: 641 VDPNLQNIPIR------------------------LEQGRLIRKAFTPSHDDAVLLSSDY 676 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440 + IE RVLA I+G++ I AF G DI+ +T + F + V+ R K + + Sbjct: 677 SQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTANDRRNAKAVNFGIV 736 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G + + + + + + Sbjct: 737 YGISDFGLSNNLGIPRKQAKAYIDTYFERYPGIKAYMERVVREAKDKGYVETLFKRRRQL 796 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 S ++ A+ + G+A +++K A Q ++ + Sbjct: 797 PDINSRQFNLRSFAERTAINSPIQGSAADILKIAMINLDQALV--------AGGFETKML 848 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + V VP + K V + S+ L Sbjct: 849 LQVHDEIVLEVPSHELAAVKELVKETMESAVNLAVP 884 >gi|296119659|ref|ZP_06838217.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] gi|295967542|gb|EFG80809.1| DNA polymerase I [Corynebacterium ammoniagenes DSM 20306] Length = 864 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 74/405 (18%), Positives = 135/405 (33%), Gaps = 61/405 (15%) Query: 167 VEATRELFK--RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 VE T+ L + ++ E L + + G +++D + QE+ A ++ Sbjct: 447 VELTKALQEIDSYQLYAELEIPLVSILAKMEATGIAVNVDTLESQQEVFANHVAAEEKAA 506 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 +L + L+ LF + ++ + + Sbjct: 507 RELAGDDTLNLNSPKQLQTVLFETLDLPKTKKTKTGYSTAAKEIEQLAINHPHPFLDHLL 566 Query: 285 SGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + KL T L + V DGR+ T AS TGR S QN+P + S Sbjct: 567 AHREYQKLKTTLEGLIKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTES---- 621 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKI 399 +RS I G L+ AD + IE RV+A ++ + I Sbjct: 622 --------------------GRTIRSAFIVGEGYETLLTADYSQIEMRVMAHLSQDPGLI 661 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +A+ GED++ ++ F+ P+DKV+ E R K M L Y G ++ A Sbjct: 662 EAYKEGEDLHNYVGSRVFDVPVDKVTSELRRRVKAMSYGLVYGLSAFGLSQQLSIPAGEA 721 Query: 456 GLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAV 494 + + + + S + ++ A+ Sbjct: 722 KKTMDAYFDRFGGVKKYLADVVEQARKDGYTATVFGRRRYLPELISDNRLARENAERAAL 781 Query: 495 KDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEG 535 + GTA +++K A Q + ++ + + V G Sbjct: 782 NAPIQGTAADIIKVAMIRVDQALEGFKSRVLLQVHDELVVEVAPG 826 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%) Query: 602 VQAISRDILCEGMKNATKN--GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + G+ ++L VHDE+V E V + Sbjct: 785 IQGTAADIIKVAMIRVDQALEGFKSRVLLQVHDELVVEVAPGELNKVQEIVE 836 >gi|148995016|ref|ZP_01823976.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] gi|147926898|gb|EDK77946.1| DNA polymerase I [Streptococcus pneumoniae SP9-BS68] Length = 870 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 447 VETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 506 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 507 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 565 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 566 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 622 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 623 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 660 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 661 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 720 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 721 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 780 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 781 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 832 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 833 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 870 >gi|163942320|ref|YP_001647204.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] gi|163864517|gb|ABY45576.1| DNA polymerase I [Bacillus weihenstephanensis KBAB4] Length = 877 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 77/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ + K G+DI + ++A L A Sbjct: 356 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPGLEVVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFEDLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 794 NTPIQGSAADIIKKAM 809 >gi|311740514|ref|ZP_07714341.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] gi|311304034|gb|EFQ80110.1| DNA-directed DNA polymerase I [Corynebacterium pseudogenitalium ATCC 33035] Length = 882 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 66/400 (16%), Positives = 136/400 (34%), Gaps = 59/400 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +D E L + + G +D+D++ ++ ++ + + +L + Sbjct: 480 YTDLELPLVTILARMEATGIAVDVDILETQKDAFVEQVAEQERAARELAGDDKLNLNSPK 539 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTL 295 L+ LF + ++ + + K L L Sbjct: 540 QLQTVLFETFELPKTKKTKTGYSTAAKEIEQLAAKNPHPFLDHLLAHREYQKMKTTLEGL 599 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + V DGR+ T AS TGR S QN+P + + Sbjct: 600 IKTVQPDGRIHTTFNQTVAS-TGRLSSTEPNLQNIPVRTEA------------------- 639 Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +RS I +G +L+ AD + IE RV+A ++ + I+A+ GED++ + Sbjct: 640 -----GRQIRSVFIVGDGFDELMTADYSQIEMRVMAHLSADPGLIEAYKEGEDLHNYVGS 694 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F+ P+D+V+ E R K M L Y G ++ A ++ + + Sbjct: 695 RVFDVPVDQVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKSIMESYFERFGGVK 754 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + D ++ + ++ A+ + GTA +++K A Sbjct: 755 KYLDEVVVQARKDGYTATLFGRRRYLPELNSDNRLARENAERAALNAPIQGTAADIIKVA 814 Query: 510 WRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545 + + ++ + + V G + R + Sbjct: 815 MIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 854 Score = 45.9 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Query: 602 VQAISRDILCEGMKNATKN--GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + G ++L VHDE+V E V + Sbjct: 803 IQGTAADIIKVAMIRVDRALQGMKSRVLLQVHDELVVEVAPGEADEVREILE 854 >gi|296505059|ref|YP_003666759.1| DNA polymerase I [Bacillus thuringiensis BMB171] gi|296326111|gb|ADH09039.1| DNA polymerase I [Bacillus thuringiensis BMB171] Length = 877 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 356 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 576 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 577 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 630 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 631 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 671 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 672 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 731 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 732 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 791 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 792 AMNTPIQGTAADIIKKAM 809 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 862 Query: 663 LKAE 666 LK + Sbjct: 863 LKVD 866 >gi|320527462|ref|ZP_08028643.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] gi|320132175|gb|EFW24724.1| DNA-directed DNA polymerase [Solobacterium moorei F0204] Length = 876 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 81/536 (15%), Positives = 165/536 (30%), Gaps = 90/536 (16%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-- 91 +A + ++ + SDLL Y + + K+ L + Sbjct: 342 GFALYNGKQAVYISLVDAKKDSDLLAYFSSDMPHKYGFDV-------KRNLHLAENEGLT 394 Query: 92 -RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + +LA + + SSL K+ E + P Sbjct: 395 LNFHDDMMLAASL-VDSSL----------TTTAKIIERYGFENTVSYEDVYGKPTKPNLI 443 Query: 151 NHVQAWQLFGEYCKRD-----VEATRELFKRLIP--LSDGERDLWLLDQTINDRGYRIDL 203 + ++ R+ E T +L + + + E L + + G R D+ Sbjct: 444 IDEEKQCMYACAFARNIFRLYAEITPKLQEYKMEKLYYEMEMPLTTVLYHMEREGIRCDI 503 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263 D++ ++ + + ++I L + L LF G+ Sbjct: 504 DILDRIATETMAKISEAQKEIYVLAAKEF-NINSPKQLAEVLFDDLGLPTGKKRSTAAGE 562 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + + + ++ R S L + + DG++ A++TGR S Sbjct: 563 LEKLQGKSPIIDYILEYR-KLSKIYSTYAEGLKKYIQQDGKIHTIYN-QSATQTGRLSSS 620 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+ +R + NG L+ +D Sbjct: 621 EPNLQNIS------------------------VRDEQGKEIRKAFLPENGCVLISSDYHQ 656 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE R+LA +A E I+AF G DI+ T F+ P D+++ + R K + + Y Sbjct: 657 IELRMLAHMANETSLIEAFKEGIDIHTKTAMDVFHKPQDEITAQDRRSAKTVNFGIVYGI 716 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G ++ ++++ + D + Sbjct: 717 SDFGLSEQLGVSRYEAHDFIERYYAAYPKIRIYMDQIVKDCEEKGYVETLCGRRREIPEI 776 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + ++ A+ + G+A +L+K A + K + +LQ+ +L Sbjct: 777 HDKNHATREFGKRAAMNAPIQGSAADLIKLAMIHIDQMMKDAKVKSKMILQVHDEL 832 >gi|217076341|ref|YP_002334057.1| DNA polymerase I [Thermosipho africanus TCF52B] gi|217036194|gb|ACJ74716.1| DNA polymerase I [Thermosipho africanus TCF52B] Length = 892 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 99/584 (16%), Positives = 188/584 (32%), Gaps = 111/584 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWD--DEPVKLWDRTEQ-------SA 52 ID ET S + L + + + S Sbjct: 318 KTFSIDTETTS------------LDPFEAKLVGISISTMEGKAYYIPVSHFGAKNISKSL 365 Query: 53 MPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 + L Q L+++ V N F+ +FK + +++A P + Sbjct: 366 IDKFLKQILQEKDYNIVGQNLKFDYEIFK---SMGFSPNVPHFDTMIAAYLLNPDEKRFN 422 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 L+ KM F + ++ P ++V + EY D + T Sbjct: 423 LEELSLKYLGYKMIS-------FDELVNENVPLFGNDFSYVPL-ERAVEYSCEDADVTYR 474 Query: 173 LFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 +F++L + E L + + G D + + +L + ++ + E Sbjct: 475 IFRKLGRKIYENEMEKLFYEIEMPLIDVLSEMELNGVYFDEEYLKELSKKYQEKMDGIKE 534 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 + ++ + + + LF I + T K + + +L+K+ + +L Sbjct: 535 KVFEIAGETF-NLNSSTQVAYILFEKLNIAPYKKT-ATGKFSTNAEVLEELSKEHEIAKL 592 Query: 283 ASSGSAILKLN-TLSEAVS-----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 KL T +++ R+ T G + TGR S QNLP + Sbjct: 593 LLEYRKYQKLKSTYIDSIPLSINRKTNRVHTTFHQTG-TSTGRLSSSNPNLQNLPTRS-- 649 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGE 395 +R + ++ AD + IE RVLA ++ + Sbjct: 650 ----------------------EEGKEIRKAVRPQRQDWWILGADYSQIELRVLAHVSKD 687 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 + +KAF + DI+ T AK F VS++ R +GK++ A+ Y G +K Sbjct: 688 ENLLKAFKDDLDIHTITAAKIFGVSEMFVSEQMRRVGKMVNFAIIYGVSPYGLSKRIGLS 747 Query: 452 ASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYP 490 S + + + K + Q S + + Sbjct: 748 VSETKKIIDNYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQLRSKNGNRVQEGE 807 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 AV + GTA +++K A H + +LQ+ +L Sbjct: 808 RIAVNTPIQGTAADIIKIAMINIHNRLKKENLSSKMILQVHDEL 851 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 11/118 (9%) Query: 543 VANVPRLVMRRHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + R +K + + ++ + + G Y+ S+ G ++ Sbjct: 751 TKKIIDNYFRYYKGVFEYLKRMKDEARKKGYVTTLFGRRRYIPQLRSKNGNRVQEGERIA 810 Query: 599 ENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 N +Q + DI+ M N ++L VHDE+V E PD V + Sbjct: 811 VNTPIQGTAADIIKIAMINIHNRLKKENLSSKMILQVHDELVFEVPDNELEFVKDIVK 868 >gi|300933405|ref|ZP_07148661.1| DNA polymerase I [Corynebacterium resistens DSM 45100] Length = 864 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 82/520 (15%), Positives = 169/520 (32%), Gaps = 93/520 (17%) Query: 37 WDDEPVKL-WDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 D + V + D + + +L D H++ G+++ Sbjct: 341 LDGDHVGVEMDLADLDPKDEKAIKTWLADPASPKWFHDAKRAFHALA-PQGLELDGVE-H 398 Query: 95 CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQ 154 S+ A + L + + G+ L A D + + Sbjct: 399 DASIAAYLLRPDVRISGLGDIL-------QSQAGRELPANADGFDRAQAVRDLVKVLTEK 451 Query: 155 AWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 E D+E L L+ + G +D + + +L A Sbjct: 452 LAAAKQEELYYDLEV----------------PLCLILARMEHEGIAVDGEHLQELSNDYA 495 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----------GTLKSI 264 + + +L + L+ LF + ++ L + Sbjct: 496 AKIDEEIAAARELAGDSTLNLSSPKQLQKVLFDDFDLPKTKRTKTGYSTAAAELEKLTAQ 555 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 +H + L ++ ++ ++ L EA+ DGR+ T GA+ TGR S Sbjct: 556 TNHPFLAHLMAHREYQKMKTT------IDGLIEAIGDDGRIHTTFNQKGAA-TGRLSSSD 608 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGI 384 QN+P + A +R+ A G+ L+ AD + I Sbjct: 609 PNLQNIPVRT------------------------DAGRRIRAAFHAGWGETLLTADYSQI 644 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ-- 442 E RV+A ++ ++ I+A+ +GED++ ++ F+ P+D+V+ E R K + L Y Sbjct: 645 EMRVMAHLSQDEGLIEAYKSGEDLHNYVGSRVFDVPVDQVTPELRRRVKALSYGLVYGLS 704 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAE 479 G ++ A + ++ + + D + Sbjct: 705 AFGLSQQLGISAGEAKVIMENYFTRFGGVKRYLDEVVHQAKETGYTETLYGRRRYLPELN 764 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + GTA +++K A + + + Sbjct: 765 SSNRVARENAERAALNAPIQGTAADIIKLAMLRVDRAIRE 804 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + ++L VHDE+V E V L Sbjct: 783 IQGTAADIIKLAMLRVDRAIREQNLKSRVLLQVHDELVVEVAKGELDKVSELVQ 836 >gi|253577306|ref|ZP_04854624.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] gi|251843310|gb|EES71340.1| DNA polymerase I [Paenibacillus sp. oral taxon 786 str. D14] Length = 886 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 80/500 (16%), Positives = 156/500 (31%), Gaps = 73/500 (14%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + A +++ +L DE V ++ ++ + LA Sbjct: 357 DVLQSEAA-AEVRAWLADEQVPKRGYDLHRADLVL---FWHGVAFAGAEHDVQLAAYLLD 412 Query: 106 PSSLKNACLALNFSEHLTK---MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 P+ L L + +E A+F D R Sbjct: 413 PTESDQTISGLAAKYQLPQVPGDDEVYGKGAKFKVPEPDVLSRHLARKADALL--RILPL 470 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 + D+ A E+ K L E L + + +G ++ + + +L + KL Sbjct: 471 QREDL-AKYEMEKLFYEL---EMPLSRILADMEKQGVAVNKEALKELGVEFEAQINKLVA 526 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL 282 I ++ + T L LF G+ ++ ++ + +LA + + Sbjct: 527 RIYEIAGQEF-NINSTKQLGEILFDKLGLPVIKKTKTG--YSTDAEVLEKLAPYHEIVQF 583 Query: 283 ASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + KL + L E G++ + A+ TGR S QN+P + Sbjct: 584 ILEYRQLAKLQSTYVEGLLKEISPKTGKVHTYFRQTIAA-TGRLSSQYPNLQNIPIR--- 639 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGE 395 +R + G ++ AD + IE RVLA I+G+ Sbjct: 640 ---------------------LEEGRKIRKVFVPSEEGWFILSADYSQIELRVLAHISGD 678 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 +AF + DI+ T F D+V R K + + Y G ++ Sbjct: 679 PGLQEAFLHDMDIHTKTAMDVFGVGPDQVDANMRRSAKAVNFGIVYGISDYGLSQNLNIT 738 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 ++Q+ + + D + + + ++ Sbjct: 739 RKEAARFIEQYFNAFQGVRRYMDEIVKAAKRDGYVKTLLERRRYLPEINASNFNLRSFAE 798 Query: 491 EFAVKDKLIGTACELVKKAW 510 A+ + GTA +++K A Sbjct: 799 RTAMNTPIQGTAADIIKLAM 818 Score = 44.0 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 64/184 (34%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + G + V R + G++ +++ A R Sbjct: 697 MDVFGVGPDQVDANMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAARFIEQYFNAF 753 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + +R + ++ +++R Y + YL + R++ + N +Q + DI Sbjct: 754 QGVRRYMDEIVKAAKRDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADI 813 Query: 610 LCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + M + + ++L VHDE+V E P + L M K +P Sbjct: 814 IKLAMVRMDEELHKHGLKSRMLLQVHDELVFEVPPEELEFMSKLVPETMGKALE--LSVP 871 Query: 663 LKAE 666 LKAE Sbjct: 872 LKAE 875 >gi|319440322|ref|ZP_07989478.1| DNA polymerase I [Corynebacterium variabile DSM 44702] Length = 901 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 96/540 (17%), Positives = 173/540 (32%), Gaps = 95/540 (17%) Query: 45 WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 D T+Q L+ L D H++ E G + + LA Sbjct: 386 IDLTDQDPADEATLRAWLADRGAPKWVHDAKAEWHKLN---GSGLVLAGVEQDTALAAYL 442 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 P L+ LA H+ + + D+P C +A L E Sbjct: 443 LRPD-LRTGDLADVVQRHVGH------------EITADAPGAVCAQATAELVAALTPELA 489 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + EL+ D E L + + G +D + L + + + + Sbjct: 490 EIGA---MELY------LDLEVPLATVLAKMEATGISVDAASLRDLSDEYGVQIEAEIAE 540 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRL- 282 + + L+ LF ++L + + + +LA L Sbjct: 541 ARTIAGDDTLNLSSPKQLQKVLFET--LELPKTKKTKTGYSTAAGELEKLAASHPHPFLG 598 Query: 283 -ASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + K ++ L EAV+ DGR+ T GA+ TGR S QN+P + + Sbjct: 599 HLMAHREYQKMKSTIDGLIEAVADDGRIHTTFNQRGAA-TGRLSSSDPNLQNIPVRTEA- 656 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGED 396 +R G L+ AD + IE RV+A ++ + Sbjct: 657 -----------------------GRRIRGAFRVGTGYATLITADYSQIEMRVMAHLSQDP 693 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+A+ GED++ +K F+ P++ V+ E R K M L Y G ++ + A Sbjct: 694 GLIEAYRAGEDLHNYVGSKVFDVPVEHVTPELRRRVKAMSYGLVYGLSAFGLSQQLRISA 753 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEFA------------ 493 + + + + D A + + PE Sbjct: 754 GEAKQIMDNYFERFGGVKRYLDEVVAHAKETGYTETLYGRRRYLPELNSSNRVAAEAAGR 813 Query: 494 --VKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + + GTA +++K+A + +LQ+ +L Q+ + R Sbjct: 814 AALNAPIQGTAADIIKRAMLRVDAEFTRRDLASRVLLQVHDELVVEVVDGEQDVVTEILR 873 Score = 45.1 bits (105), Expect = 0.035, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + DI+ M ++L VHDE+V E D V + M Sbjct: 820 IQGTAADIIKRAMLRVDAEFTRRDLASRVLLQVHDELVVEVVDGEQDVVTEILREQM 876 >gi|168489504|ref|ZP_02713703.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|183572034|gb|EDT92562.1| DNA polymerase I (POL I) [Streptococcus pneumoniae SP195] gi|332075687|gb|EGI86154.1| DNA polymerase I family protein [Streptococcus pneumoniae GA17570] Length = 877 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|228910411|ref|ZP_04074226.1| DNA polymerase I [Bacillus thuringiensis IBL 200] gi|228849177|gb|EEM94016.1| DNA polymerase I [Bacillus thuringiensis IBL 200] Length = 891 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L D + ++ + K GIDI + ++A L A Sbjct: 370 DAFKDWLADGEMRKHTFDAKRAIVALK-WNGIDIQGVDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|228967684|ref|ZP_04128704.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] gi|228792017|gb|EEM39599.1| DNA polymerase I [Bacillus thuringiensis serovar sotto str. T04001] Length = 891 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L D + ++ + K GIDI + ++A L A Sbjct: 370 DAFKDWLADGEMRKHTFDAKRAIVALK-WNGIDIQGVDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMEDIVKDAKRKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 >gi|75762014|ref|ZP_00741928.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903104|ref|ZP_04067240.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] gi|74490500|gb|EAO53802.1| DNA polymerase I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856513|gb|EEN01037.1| DNA polymerase I [Bacillus thuringiensis IBL 4222] Length = 891 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L D + ++ + K GIDI + ++A L A Sbjct: 370 DAFKDWLADGEMRKHTFDAKRAIVALK-WNGIDIQGVDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|297171385|gb|ADI22388.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [uncultured Planctomycetales bacterium HF0500_02G17] Length = 987 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 102/586 (17%), Positives = 191/586 (32%), Gaps = 104/586 (17%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK-------RWI--CTSVL 99 +++ + L L D T + HN ++ ++ ++ G+++ W + + Sbjct: 422 DEATVLGALRPVLEDATKPKLGHNLKYDILVLRRA-GVELRGHVSTVGAGDWPGGDSMIA 480 Query: 100 ARTNGLP-SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL 158 + SS LA+ L R S + Sbjct: 481 SYLVDASRSSHSMDALAMAL------------LERRNIPISELIGTGKKQKTFDTVPLDR 528 Query: 159 FGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLK 208 Y D + T +L +RL+P E L + + G R+D D + + Sbjct: 529 ATPYAAEDADVTLQLCQRLLPELQEMELGALFGGLEMPLVDVLAELEWNGIRVDPDELDR 588 Query: 209 LQELIAQERKKLDEDIVKLTDGII---RSSRQTYALRMYLFLI-------TGIDLVDMSE 258 + I K L I G + + L LF G+ ++ + Sbjct: 589 QRGRIEGRVKDLRNQIADEAMGAVGREFDADSPKQLAGVLFNKPDAADPGLGLRVIKRGK 648 Query: 259 -------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQ 310 L+ + +++ DLIL + L L E + R+ + Sbjct: 649 TGPSTDAEVLEKLSQDASVKTPIPDLILEYRQLTKLVNTYLVNLVEEIDPRTKRIHASFN 708 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A+ TGR S QN+P + +R +A Sbjct: 709 QTVAA-TGRLSSSDPNLQNIPIRT------------------------ELGREIRKAFVA 743 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G LV AD + IE R+LA ++ + I+AF G+DI+ A+ + P+ +VS+EQR Sbjct: 744 EPGHLLVAADYSQIELRLLAHLSRDPALIEAFREGQDIHAAVAAQIHDVPLAEVSREQRN 803 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ 486 K++ + Y G A+ S G + + + +TF + A++H Sbjct: 804 GAKMVNFGIVYGVTAFGLARRLGVSNSEAGEIIDGYKRRFAGITTFLEECIAQAHAQGYV 863 Query: 487 DQ---------------------YPEFAVKDKLIGTACELVKKAWRAKHQG---VLQLWK 522 + A+ + G+A +L+K A H+ W+ Sbjct: 864 ETMMKRRRPIPDIDSRDQNRRALAERMAINSVVQGSAADLIKIAMVDLHRRLSPRAAAWR 923 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 + V+ I V P+ + + + ++ L Sbjct: 924 EGAGPEIEGVRMLLQIHDELVFEAPKDRAEAVRDLIVARMEAAMAL 969 Score = 44.7 bits (104), Expect = 0.047, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 20/87 (22%) Query: 598 TENIVQAISRDILCEGMKNATKN-----------------GYDIVLTVHDEIVSETPDTP 640 ++VQ + D++ M + + G ++L +HDE+V E P Sbjct: 892 INSVVQGSAADLIKIAMVDLHRRLSPRAAAWREGAGPEIEGVRMLLQIHDELVFEAPKDR 951 Query: 641 YFSVGT-LCSLMTKNPSWAKGLPLKAE 666 +V + + M A +PL A+ Sbjct: 952 AEAVRDLIVARMEAAM--ALDVPLVAD 976 >gi|149004186|ref|ZP_01828983.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] gi|147757848|gb|EDK64859.1| DNA polymerase I [Streptococcus pneumoniae SP14-BS69] Length = 870 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 447 VETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 506 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 507 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 565 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 566 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 622 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 623 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 660 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 661 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 720 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 721 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 780 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 781 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 832 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 833 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 870 >gi|329929159|ref|ZP_08282945.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] gi|328936836|gb|EGG33271.1| DNA-directed DNA polymerase [Paenibacillus sp. HGF5] Length = 886 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 159/498 (31%), Gaps = 69/498 (13%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNG 104 D + + +L D + ++ RI GI + LA Sbjct: 357 DVLKSEEA-EPVRAWLADSEIPKRGYDLH--RIDLALHWQGIAFAGAAF--DVHLAAYLL 411 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P+ L L ++ + + F KG+ P + H+ L Sbjct: 412 DPTESNQTLSGLASKYGLAYLQADEDV---FGKGAKYKVPDVDKLSEHMARKCLAVSELV 468 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 E + L D E L + + +G ++ + + +L + KL ++I Sbjct: 469 PIQEKELAANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEI 528 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ + L LF+ + ++ ++ + +LA + RL Sbjct: 529 YEIAGTEF-NLNSPKQLGEILFVKLELPVIKKTKTG--YSTDAEVLEKLAPYHDIVRLIL 585 Query: 285 SGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L E S G++ T + TGR S QN+P + Sbjct: 586 QYRTLAKLQSTYVEGLLKEISSVTGKVH-TYYRQTIAATGRLSSQYPNLQNIPIR----- 639 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R + S G ++ AD + IE RVLA I+ ++ Sbjct: 640 -------------------LEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDER 680 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF + DI+ T F +D+V R K + + Y G ++ Sbjct: 681 LKEAFVHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRK 740 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 + Q+ + + + D + + + ++ Sbjct: 741 EAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERT 800 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++K A Sbjct: 801 AMNTPIQGTAADIIKLAM 818 Score = 45.5 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 16/172 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + G + V R + G++ +++ A + V Sbjct: 697 MDVFGVGMDEVDSNMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAAAFIDQYFEVF 753 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + +R + +++ +++ Y + YL + R++ + N +Q + DI Sbjct: 754 QGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADI 813 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + M + K + ++L VHDE+V E P+ + L +M++ Sbjct: 814 IKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVPDVMSQA 865 >gi|229019809|ref|ZP_04176611.1| DNA polymerase I [Bacillus cereus AH1273] gi|229026035|ref|ZP_04182418.1| DNA polymerase I [Bacillus cereus AH1272] gi|228735251|gb|EEL85863.1| DNA polymerase I [Bacillus cereus AH1272] gi|228741480|gb|EEL91678.1| DNA polymerase I [Bacillus cereus AH1273] Length = 891 Score = 225 bits (574), Expect = 1e-56, Method: Composition-based stats. Identities = 82/491 (16%), Positives = 164/491 (33%), Gaps = 72/491 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA-- 112 +L + + ++ + K G+DI + ++A P+ Sbjct: 370 DAFKAWLANAEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYLLDPADTDKDFR 426 Query: 113 CLALNFSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHV--QAWQLFGEYCKRDVEA 169 +A H K EE A+ +D R HV Q F E K++ Sbjct: 427 AVAKMKETHAVKSDEEVYGKGAKRAVPELDVVAEHVARKVHVLYDVKQTFIEELKKN--E 484 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ELF L E L + + +G ++D + + + E +A K+++++I KL Sbjct: 485 QYELFTEL------ELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEIYKLAG 538 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNRLASSG 286 + L + LF + ++ ++ + + ++I L+ Sbjct: 539 TEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHYRQLGK 597 Query: 287 SAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + V D ++ ++TGR S QN+P + Sbjct: 598 LNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------------ 644 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G + AD + IE RVLA IA + ++AF + Sbjct: 645 ------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDPGLVEAFQH 692 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 DI+ T F D+V+ R K + + Y G ++ ++ Sbjct: 693 DMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIE 752 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 ++ ++ + D + S + ++ A+ + Sbjct: 753 KYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQ 812 Query: 500 GTACELVKKAW 510 G+A +++KKA Sbjct: 813 GSAADIIKKAM 823 >gi|149182832|ref|ZP_01861293.1| DNA polymerase I [Bacillus sp. SG-1] gi|148849447|gb|EDL63636.1| DNA polymerase I [Bacillus sp. SG-1] Length = 875 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 70/398 (17%), Positives = 134/398 (33%), Gaps = 66/398 (16%) Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRID 202 V + E+ R EL +D E L ++ + G +D Sbjct: 436 VPEEEKLAEHLARKANVVYELKSTCEEALKENDQYQLFTDLELPLAIILADMEYTGVGVD 495 Query: 203 LDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---G 259 +D + +++ +A+ ++++ I +L + L + LF + ++ ++ Sbjct: 496 VDRLKEMKSELAERLDEMEKKIYELAGEEF-NINSPKQLGVILFEKLELPVIKKTKTGYS 554 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTG 318 T +L D IL+ + L + + D ++ ++TG Sbjct: 555 TSADVLEKLQSKHEIIDHILHYRQLGKLQSTYIEGLLKVIHEDSNKVHTRFN-QALTQTG 613 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV- 377 R S QN+P + +R I S L+ Sbjct: 614 RLSSTDPNLQNIPIR------------------------LEEGRKIRQAFIPSEKNWLMF 649 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE RVLA IAG++ I AF G DI+ T F+ D V+ R K + Sbjct: 650 AADYSQIELRVLAHIAGDEKLIHAFNEGMDIHTKTAMDVFHVDADSVTSNMRRHAKAVNF 709 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 + Y G ++ G +Q++ + + D Sbjct: 710 GIVYGISDFGLSQSLGITRKEAGEFIQRYLDSYPGVQEYMDDIISEAKQNGFVKTLLQRR 769 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 770 RYIPEITSRNFNLRSFAERTAMNTPIQGSAADIIKKAM 807 >gi|15902076|ref|NP_357626.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116516654|ref|YP_815461.1| DNA polymerase I [Streptococcus pneumoniae D39] gi|27735185|sp|P59200|DPO1_STRR6 RecName: Full=DNA polymerase I; Short=POL I gi|15457562|gb|AAK98836.1| DNA polymerase I [Streptococcus pneumoniae R6] gi|116077230|gb|ABJ54950.1| DNA polymerase I [Streptococcus pneumoniae D39] Length = 877 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|237649916|ref|ZP_04524168.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974] gi|237822599|ref|ZP_04598444.1| DNA polymerase I [Streptococcus pneumoniae CCRI 1974M2] Length = 877 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLSFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|29375463|ref|NP_814617.1| DNA polymerase I [Enterococcus faecalis V583] gi|227554989|ref|ZP_03985036.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229548814|ref|ZP_04437539.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255971330|ref|ZP_05421916.1| DNA polymerase A [Enterococcus faecalis T1] gi|255973949|ref|ZP_05424535.1| DNA polymerase A [Enterococcus faecalis T2] gi|256617748|ref|ZP_05474594.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256957263|ref|ZP_05561434.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256960003|ref|ZP_05564174.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|257077763|ref|ZP_05572124.1| DNA polymerase A [Enterococcus faecalis JH1] gi|257089289|ref|ZP_05583650.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257418473|ref|ZP_05595467.1| DNA polymerase A [Enterococcus faecalis T11] gi|257421124|ref|ZP_05598114.1| DNA polymerase I [Enterococcus faecalis X98] gi|293383756|ref|ZP_06629663.1| DNA polymerase I [Enterococcus faecalis R712] gi|293388768|ref|ZP_06633261.1| DNA polymerase I [Enterococcus faecalis S613] gi|294781289|ref|ZP_06746635.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|307267954|ref|ZP_07549342.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|307278426|ref|ZP_07559501.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|307286686|ref|ZP_07566772.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|312901580|ref|ZP_07760853.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|312904438|ref|ZP_07763597.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|312907028|ref|ZP_07766024.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|312952854|ref|ZP_07771716.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|312978714|ref|ZP_07790441.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|29342923|gb|AAO80687.1| DNA polymerase I [Enterococcus faecalis V583] gi|227175871|gb|EEI56843.1| DNA polymerase I [Enterococcus faecalis HH22] gi|229306043|gb|EEN72039.1| DNA polymerase I [Enterococcus faecalis ATCC 29200] gi|255962348|gb|EET94824.1| DNA polymerase A [Enterococcus faecalis T1] gi|255966821|gb|EET97443.1| DNA polymerase A [Enterococcus faecalis T2] gi|256597275|gb|EEU16451.1| DNA polymerase A [Enterococcus faecalis ATCC 4200] gi|256947759|gb|EEU64391.1| DNA polymerase A [Enterococcus faecalis DS5] gi|256950499|gb|EEU67131.1| DNA polymerase A [Enterococcus faecalis Merz96] gi|256985793|gb|EEU73095.1| DNA polymerase A [Enterococcus faecalis JH1] gi|256998101|gb|EEU84621.1| DNA polymerase I [Enterococcus faecalis CH188] gi|257160301|gb|EEU90261.1| DNA polymerase A [Enterococcus faecalis T11] gi|257162948|gb|EEU92908.1| DNA polymerase I [Enterococcus faecalis X98] gi|291078832|gb|EFE16196.1| DNA polymerase I [Enterococcus faecalis R712] gi|291081925|gb|EFE18888.1| DNA polymerase I [Enterococcus faecalis S613] gi|294451625|gb|EFG20081.1| DNA-directed DNA polymerase [Enterococcus faecalis PC1.1] gi|295113921|emb|CBL32558.1| DNA polymerase I [Enterococcus sp. 7L76] gi|306502164|gb|EFM71448.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0109] gi|306504932|gb|EFM74127.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0860] gi|306515595|gb|EFM84122.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4248] gi|310627013|gb|EFQ10296.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 512] gi|310629370|gb|EFQ12653.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0102] gi|310632136|gb|EFQ15419.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0635] gi|311288421|gb|EFQ66977.1| DNA-directed DNA polymerase [Enterococcus faecalis DAPTO 516] gi|311291375|gb|EFQ69931.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0470] gi|315032493|gb|EFT44425.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0017] gi|315034273|gb|EFT46205.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0027] gi|315145154|gb|EFT89170.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2141] gi|315148036|gb|EFT92052.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4244] gi|315149639|gb|EFT93655.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0012] gi|315152951|gb|EFT96967.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0031] gi|315155181|gb|EFT99197.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0043] gi|315157509|gb|EFU01526.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0312] gi|315163062|gb|EFU07079.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0645] gi|315167987|gb|EFU12004.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1341] gi|315574209|gb|EFU86400.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309B] gi|315577339|gb|EFU89530.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0630] gi|315581648|gb|EFU93839.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0309A] gi|329577869|gb|EGG59290.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1467] Length = 882 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G ++ + + Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 807 ADILKIAMIE 816 >gi|319647318|ref|ZP_08001540.1| DNA polymerase I [Bacillus sp. BT1B_CT2] gi|317390665|gb|EFV71470.1| DNA polymerase I [Bacillus sp. BT1B_CT2] Length = 879 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 74/495 (14%), Positives = 171/495 (34%), Gaps = 69/495 (13%) Query: 53 MPSD-------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 +P + ++ DE+ ++ + + GI++ + +LA Sbjct: 349 IPEETAVQSDCFKEWAEDESKKKWVFDAKRAAVAL-RWRGIELKGAEF--DVLLAAYIIN 405 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 P + ++ L + +A+ + KG+ + P + A+H+ + Sbjct: 406 PGHSYDDVASVAKEHQLHIVSADEAV---YGKGAKQAVPDEKELADHLARKAKAISLLRE 462 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + E ++L E L + + G ++D+D + K+ E ++ + + ++ I Sbjct: 463 KLLDELEENEQLELFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIH 522 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 + + L + LF G+ +V ++ T +L + + IL+ Sbjct: 523 ESAGETF-NINSPKQLGVILFEKLGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYR 581 Query: 283 ASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L + + D ++ ++TGR S QN+P + Sbjct: 582 QIGKLQSTYVEGLLKVIKKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------- 632 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + S G + AD + IE RVLA I+ + I+ Sbjct: 633 ----------------LEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIE 676 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF N D++ T F+ ++V+ R K + + Y G ++ Sbjct: 677 AFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAA 736 Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVK 495 ++++ + + + + E+ + ++ A+ Sbjct: 737 AFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMN 796 Query: 496 DKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 797 TPIQGSAADIIKKAM 811 Score = 42.0 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 11/129 (8%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + R + + V + V + Y+ TS+ Sbjct: 730 ITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRR---RYIPELTSRNFNL 786 Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 R++ + N +Q + DI+ + M + ++L VHDE++ E P+ Sbjct: 787 RSFAERTAMNTPIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKV 846 Query: 644 VGTLC-SLM 651 + L +M Sbjct: 847 LEKLVPEVM 855 >gi|261408692|ref|YP_003244933.1| DNA polymerase I [Paenibacillus sp. Y412MC10] gi|261285155|gb|ACX67126.1| DNA polymerase I [Paenibacillus sp. Y412MC10] Length = 886 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 159/498 (31%), Gaps = 69/498 (13%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNG 104 D + + +L D + ++ RI GI + LA Sbjct: 357 DVLKSEEA-EPVRAWLADSEIPKRGYDLH--RIDLALHWQGIAFAGAAF--DVHLAAYLL 411 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P+ L L ++ + + F KG+ P + H+ L Sbjct: 412 DPTESNQTLSGLASKYGLAYLQADEDV---FGKGAKYKVPDVEKLSEHMARKCLAVSELV 468 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 E + L D E L + + +G ++ + + +L + KL ++I Sbjct: 469 PIQEKELAANEMLPLFHDLEMPLSRILADMEKQGIAVNAEDLKELGREFEGQIAKLVQEI 528 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ + L LF+ + ++ ++ + +LA + RL Sbjct: 529 YEIAGTEF-NLNSPKQLGEILFVKLELPVIKKTKTG--YSTDAEVLEKLAPYHDIVRLIL 585 Query: 285 SGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL + L E S G++ T + TGR S QN+P + Sbjct: 586 QYRTLAKLQSTYVEGLLKEISSVTGKVH-TYYRQTIAATGRLSSQYPNLQNIPIR----- 639 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R + S G ++ AD + IE RVLA I+ ++ Sbjct: 640 -------------------LEEGRKLRKVFVPSEPGWSILAADYSQIELRVLAHISDDER 680 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF + DI+ T F +D+V R K + + Y G ++ Sbjct: 681 LKEAFVHDMDIHTKTAMDVFGVGMDEVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRK 740 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 + Q+ + + + D + + + ++ Sbjct: 741 EAAAFIDQYFEVFQGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERT 800 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++K A Sbjct: 801 AMNTPIQGTAADIIKLAM 818 Score = 45.5 bits (106), Expect = 0.026, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 16/172 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + G + V R + G++ +++ A + V Sbjct: 697 MDVFGVGMDEVDSNMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAAAFIDQYFEVF 753 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + +R + +++ +++ Y + YL + R++ + N +Q + DI Sbjct: 754 QGVRRYMDVIVKQAKQDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADI 813 Query: 610 LCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + M + K + ++L VHDE+V E P+ + L +M++ Sbjct: 814 IKLAMVHMDKALHERQLKSRMLLQVHDELVFEVPEDELEVMKELVPDVMSQA 865 >gi|227548116|ref|ZP_03978165.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227079778|gb|EEI17741.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 874 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 66/406 (16%), Positives = 143/406 (35%), Gaps = 71/406 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +D E L + + + G +D+D++ + + +++E+ +L D + Sbjct: 472 YADLELPLVSILAEMENAGIAVDVDVLEAQLKDFTAKVAQVEEEARQLVDEPSLNLSSPK 531 Query: 240 ALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 L + LF + ++ L H + +L ++ S+ Sbjct: 532 QLSVVLFDKLELPKTKKTKTGYSTAAGEIEALAETNPHPFLDKLLAHREYQKMKST---- 587 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L +AV+ +GR+ T + + TGR S QN+P + + Sbjct: 588 --IEGLIKAVADNGRIHTTFK-QTVASTGRLSSTDPNLQNIPVRTEA------------- 631 Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +RS G + L+ AD + IE RV+A ++ + I+A+ GED+ Sbjct: 632 -----------GRKIRSAFTVGAGYECLLTADYSQIEMRVMAHLSQDSGLIEAYREGEDL 680 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++ F+ PID+V+ E R K M L Y G + A ++ + + Sbjct: 681 HNFVGSRVFDVPIDQVTPELRRRVKAMSYGLVYGLSAYGLSNQLSISAGEAKSIMESYFE 740 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 ++ D ++ ++ A+ + G+A Sbjct: 741 RFGGVKSYLDNVVEQARRDGYTSTVFGRRRYLPELTSDNRVARENAERAALNAPIQGSAA 800 Query: 504 ELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVAN 545 +++K A + + ++ + + + G R + Sbjct: 801 DIIKVAMIRVDRALESFNSRVLLQVHDELVVEIAPGELAEVREIVE 846 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 94/271 (34%), Gaps = 24/271 (8%) Query: 393 AGEDWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAIG--KVMELALGYQGG 444 + + IKA A+ I+ T + + +T + + R K+ A G Sbjct: 586 STIEGLIKAVADNGRIHTTFKQTVASTGRLSSTDPNLQNIPVRTEAGRKIRS-AFTVGAG 644 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + T A + ++++ + + + E + + E H ++ + V D I Sbjct: 645 YECLLT-ADYSQIEMRVMAHLSQDSGLIEAYREGEDLHNFVGSR-----VFDVPIDQVTP 698 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 +++ +A G++ + G A+ + K + V+ Sbjct: 699 ELRRRVKAMSYGLVYGLSAYGLSNQLSISAG---EAKSIMESYFERFGGVKSYLDNVVEQ 755 Query: 565 SRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN-- 620 +RR Y+ V G YL TS R + N +Q + DI+ M + Sbjct: 756 ARRDGYTSTVFGRRRYLPELTSDNRVARENAERAALNAPIQGSAADIIKVAMIRVDRALE 815 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++L VHDE+V E V + Sbjct: 816 SFNSRVLLQVHDELVVEIAPGELAEVREIVE 846 >gi|256854276|ref|ZP_05559640.1| DNA polymerase I [Enterococcus faecalis T8] gi|307275295|ref|ZP_07556438.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|307290893|ref|ZP_07570783.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|256709836|gb|EEU24880.1| DNA polymerase I [Enterococcus faecalis T8] gi|306497963|gb|EFM67490.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0411] gi|306507929|gb|EFM77056.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2134] gi|315029747|gb|EFT41679.1| DNA-directed DNA polymerase [Enterococcus faecalis TX4000] Length = 882 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G ++ + + Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 807 ADILKIAMIE 816 >gi|52081410|ref|YP_080201.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52786786|ref|YP_092615.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52004621|gb|AAU24563.1| DNA polymerase I [Bacillus licheniformis ATCC 14580] gi|52349288|gb|AAU41922.1| PolA [Bacillus licheniformis ATCC 14580] Length = 879 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 74/495 (14%), Positives = 171/495 (34%), Gaps = 69/495 (13%) Query: 53 MPSD-------LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 +P + ++ DE+ ++ + + GI++ + +LA Sbjct: 349 IPEETAVQSDCFKEWAEDESKKKWVFDAKRAAVAL-RWRGIELKGAEF--DVLLAAYIIN 405 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 P + ++ L + +A+ + KG+ + P + A+H+ + Sbjct: 406 PGHSYDDVASVAKEHQLHIVSADEAV---YGKGAKQAVPDEKELADHLARKAKAISLLRE 462 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + E ++L E L + + G ++D+D + K+ E ++ + + ++ I Sbjct: 463 KLLDELEENEQLELFEALEMPLAHILGEMESIGVQVDVDRLKKMGEELSAKLAEYEKKIH 522 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 + + L + LF G+ +V ++ T +L + + IL+ Sbjct: 523 ESAGETF-NINSPKQLGVILFDKLGLPVVKKTKTGYSTSADVLEKLRDKHVIIEDILHYR 581 Query: 283 ASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L + + D ++ ++TGR S QN+P + Sbjct: 582 QIGKLQSTYVEGLLKVIKKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR-------- 632 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + S G + AD + IE RVLA I+ + I+ Sbjct: 633 ----------------LEEGRKIRQAFVPSQKGWLIFAADYSQIELRVLAHISKDKNLIE 676 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF N D++ T F+ ++V+ R K + + Y G ++ Sbjct: 677 AFTNDMDVHTKTAMDVFHVSEEEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAA 736 Query: 457 LDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEFAVK 495 ++++ + + + + E+ + ++ A+ Sbjct: 737 AFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRRRYIPELTSRNFNLRSFAERTAMN 796 Query: 496 DKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 797 TPIQGSAADIIKKAM 811 Score = 42.0 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 46/129 (35%), Gaps = 11/129 (8%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + R + + V + V + Y+ TS+ Sbjct: 730 ITRKEAAAFIERYFHSFQGVKEYMEETVQEAKQRGYVTTLLSRR---RYIPELTSRNFNL 786 Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS 643 R++ + N +Q + DI+ + M + ++L VHDE++ E P+ Sbjct: 787 RSFAERTAMNTPIQGSAADIIKKAMIDMADKLKEKNLQAKLLLQVHDELIFEAPEDEIKV 846 Query: 644 VGTLC-SLM 651 + L +M Sbjct: 847 LEKLVPEVM 855 >gi|257081123|ref|ZP_05575484.1| DNA polymerase A [Enterococcus faecalis E1Sol] gi|256989153|gb|EEU76455.1| DNA polymerase A [Enterococcus faecalis E1Sol] Length = 882 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G ++ + + Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 807 ADILKIAMIE 816 >gi|218899740|ref|YP_002448151.1| DNA polymerase I [Bacillus cereus G9842] gi|218542969|gb|ACK95363.1| DNA polymerase I [Bacillus cereus G9842] Length = 877 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 79/496 (15%), Positives = 167/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L D + ++ + K GIDI + ++A L A Sbjct: 356 DAFKDWLADGEMRKHTFDAKRAIVALK-WNGIDIQGVDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 460 QTFVEELEKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDHHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 862 Query: 663 LKAE 666 LK + Sbjct: 863 LKVD 866 >gi|167758306|ref|ZP_02430433.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] gi|167664203|gb|EDS08333.1| hypothetical protein CLOSCI_00644 [Clostridium scindens ATCC 35704] Length = 871 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 70/383 (18%), Positives = 132/383 (34%), Gaps = 68/383 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + G R++ + + + + + +L++DI + + L Sbjct: 473 DVEMPLVFTLYDMEVNGVRVEAEALKYYGDQLGAKIVELEKDIYEEAGENF-NINSPKQL 531 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 + LF I ++ + + +LA D + KL + L+ Sbjct: 532 GVVLFENMKIPGGKKTKTG--YSTAADVLEKLAPDYPIIAKILEYRQYTKLKSTYADGLA 589 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + DGR+ + TGR S QN+P + Sbjct: 590 NYIREDGRIHSKFN-QTITATGRLSSTEPNLQNIPIR----------------------- 625 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R I +G V AD + IE RVLA +G+ I+A+ +DI+ T ++ Sbjct: 626 -VELGRLIRKVFIPEDGFVFVDADYSQIELRVLAHCSGDSHLIEAYKEKKDIHRITASQV 684 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ P D+V+ +QR K + + Y G ++ ++ + F Sbjct: 685 FHIPFDEVTDQQRRNAKAVNFGIVYGISSFGLSQDLSITRKEASKYIEDYFTAYPGIKIF 744 Query: 473 EDWEQAESHHL--------------------WMQDQY-PEFAVKDKLIGTACELVKKAW- 510 D + + +MQ + A+ + GTA +++K A Sbjct: 745 LDDTVKHAKEMGYVVTLFGRRRPVPELSSSNYMQRSFGERVAMNAPIQGTAADIIKIAMT 804 Query: 511 ---------RAKHQGVLQLWKDL 524 + K + VLQ+ +L Sbjct: 805 GVGRRLKEQKMKSRLVLQVHDEL 827 >gi|116513094|ref|YP_812001.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] gi|116108748|gb|ABJ73888.1| DNA polymerase I [Lactococcus lactis subsp. cremoris SK11] Length = 877 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 157/475 (33%), Gaps = 68/475 (14%) Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE--HLTKMEEGKALIAR 134 R+L ++I ++LA+ + + HL EE Sbjct: 380 RVLLSH---LNIELPLVKFDAMLAKYLISTTEDNKISTIARLFDVGHLATDEEI------ 430 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 F KG+ + P D +H+ K + A ++ LSD E L + + Sbjct: 431 FGKGTKLALPDDEILFDHLARKIRVLARAKEKMMAELIENEQEHLLSDMELPLAEVLAKM 490 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 G + + + ++ ++ L +I +L + L + LF + + Sbjct: 491 EITGISVSQNTLEEIGAENEEKLALLTREIYELAGEEF-NINSPKQLGVILFEKLQLPVG 549 Query: 255 DMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 ++ + + + ++ + ++ R + + + L ++ DG++ Sbjct: 550 KKTKTGYSTAVDVLEDLAALSPVVAKILEYRQINKVQST-YVKGLIPQIADDGKIHTRYV 608 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 ++TGR S QN+P +R + Sbjct: 609 -QDLTQTGRLSSVDPNLQNIP------------------------VRLEEGRKIRKAFVP 643 Query: 371 SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQR 429 S L+ +D + IE RVLA I+ ++ I AF +G DI+ +T + F + V+ R Sbjct: 644 SQDSLLLSSDYSQIELRVLAHISADEHLIDAFKHGADIHTSTSMRVFGIEKAEDVTANDR 703 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + + Y G A+ ++ + + T+ + Sbjct: 704 RNAKAVNFGVVYGISDFGLARNLGITRKDAKNYIETYFERYPGIKTYMENIVREARDKGF 763 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + + ++ A+ + G+A +++K A + + + Sbjct: 764 VETMSHRRRKIPDINARNFNVRGFAERTAINSPIQGSAADILKIAMINLDKALTE 818 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M N K ++L VHDEI+ + P + L M + Sbjct: 797 IQGSAADILKIAMINLDKALTERQSKSKLLLQVHDEIILDVPLEELEEIQVLVKETMEEA 856 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 857 IELA--VPLKVD 866 >gi|296269454|ref|YP_003652086.1| DNA polymerase I [Thermobispora bispora DSM 43833] gi|296092241|gb|ADG88193.1| DNA polymerase I [Thermobispora bispora DSM 43833] Length = 893 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 88/514 (17%), Positives = 163/514 (31%), Gaps = 77/514 (14%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L DET AH+ + + + C + +A +P S L L + Sbjct: 380 LADETKPKAAHDVKGPLLAL---WEHGLDLRGLTCDTAIAAYLAMPGQRSFPIEELVLRY 436 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKR- 176 + + +D A + L + + +A R L R Sbjct: 437 LN---------RELRYETPADGQASLFDDVEAGMARDLALKAQAVRELADALERHLAARG 487 Query: 177 -LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 +++ E L + + G D L+ + K+ E L + Sbjct: 488 GTRLMTEVELPLTRVLAEMEHTGIAADRQYFATLEAEFSAAAKQAVEAAHALVGEQF-NL 546 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT- 294 L+ LF+ G+ + + D L + KL Sbjct: 547 GSPKQLQEILFVKLGLPKTKKIKTGYTTDADALAWLATQTDNELPAILLRHRDQTKLRAT 606 Query: 295 ---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L + ++ DGR+ T A+ TGR S QN+P + Sbjct: 607 VEGLIKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIPIRT----------------- 648 Query: 352 TIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I G L+ AD + IE R++A ++G++ I AF +G D + Sbjct: 649 -------AEGRRIRKGFIVGKGYETLLTADYSQIELRIMAHLSGDEAMIAAFGSGHDFHQ 701 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 T A+ F P D+V+ E RA K M L Y G A + +++ + Sbjct: 702 ATAARVFGLPPDQVTPELRARIKAMNYGLAYGLSDFGLAGQLNIPVAEARALKEEYFEEF 761 Query: 467 KSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACEL 505 + + ++ + ++ A+ + G+A ++ Sbjct: 762 AGVREYLNRVVDQARKDGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADI 821 Query: 506 VKKAW---RAKHQGVL-QLWKDLTEGFACVVQEG 535 +K A R +G+ ++ + + V G Sbjct: 822 IKVAMLKVRKAMEGMRSRMLLQVHDELVFEVAPG 855 >gi|256761634|ref|ZP_05502214.1| DNA polymerase A [Enterococcus faecalis T3] gi|256964301|ref|ZP_05568472.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|257086217|ref|ZP_05580578.1| DNA polymerase A [Enterococcus faecalis D6] gi|257415442|ref|ZP_05592436.1| DNA polymerase A [Enterococcus faecalis AR01/DG] gi|307271878|ref|ZP_07553146.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|256682885|gb|EEU22580.1| DNA polymerase A [Enterococcus faecalis T3] gi|256954797|gb|EEU71429.1| DNA polymerase A [Enterococcus faecalis HIP11704] gi|256994247|gb|EEU81549.1| DNA polymerase A [Enterococcus faecalis D6] gi|257157270|gb|EEU87230.1| DNA polymerase A [Enterococcus faecalis ARO1/DG] gi|306511384|gb|EFM80386.1| DNA-directed DNA polymerase [Enterococcus faecalis TX0855] gi|315027064|gb|EFT38996.1| DNA-directed DNA polymerase [Enterococcus faecalis TX2137] gi|323480059|gb|ADX79498.1| DNA polymerase I [Enterococcus faecalis 62] gi|327534459|gb|AEA93293.1| DNA-directed DNA polymerase I [Enterococcus faecalis OG1RF] Length = 882 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G ++ + + Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 807 ADILKIAMIE 816 >gi|228960856|ref|ZP_04122489.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798752|gb|EEM45732.1| DNA polymerase I [Bacillus thuringiensis serovar pakistani str. T13001] Length = 891 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 80/498 (16%), Positives = 168/498 (33%), Gaps = 86/498 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L D + ++ + K GID+ + ++A L A Sbjct: 370 DAFKEWLADGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELKVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLCNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 590 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 591 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 644 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 645 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 685 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 686 LVEAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 745 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + + + S + ++ Sbjct: 746 AAAEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 805 Query: 493 AVKDKLIGTACELVKKAW 510 A+ + GTA +++KKA Sbjct: 806 AMNTPIQGTAADIIKKAM 823 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|296111925|ref|YP_003622307.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] gi|295833457|gb|ADG41338.1| DNA-directed DNA polymerase I [Leuconostoc kimchii IMSNU 11154] Length = 895 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 79/500 (15%), Positives = 162/500 (32%), Gaps = 87/500 (17%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 +L + + ++ N + +LFK+ + + + +LA Sbjct: 374 ELRSVIENAAIIKNVFNVKAQFVLFKR---LGMTLRGVEFDFLLAAY------------- 417 Query: 116 LNFSEHLTKMEEGKALIARFC-----------KGSIDSPPYDCTRAN-HVQAWQLFGEYC 163 + E L RF KG+ + P + +R H+ Sbjct: 418 --LLDTTDNDNELSTLAQRFDFYVTPDEDIYGKGAKYAVPEETSRVLVHLAHKADVLMQL 475 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++ A + ++ ++ E L + + RG +ID + + +ER ++ Sbjct: 476 EQPAFAALQDHEQTHLYTEIELPLAHVLADMEYRGIKIDQTRLRE-IGTDLEERIDTIKE 534 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 + + G + + L + LF G+ ++ ++ T +L D IL Sbjct: 535 AIFIEAGEVFNINSPKQLGILLFEKMGLPVIKKTKTGYSTAVDVLEKLAPQAPIVDHILQ 594 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + ++ L V D ++ ++TGR S QN+P + + Sbjct: 595 YRQLAKLKSTYVDGLLSVVHEKDSKIHTRF-LQTLTQTGRLSSIDPNLQNIPMRTEA--- 650 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R+ + S ++ AD + IE RVLA + G+ Sbjct: 651 ---------------------GRKIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNM 689 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF NGEDI+ T F + V R K + + Y G A + Sbjct: 690 QQAFLNGEDIHAETARAVFGLDDNVPVDPLMRRTAKAVNFGIVYGISDFGLANNLGISRA 749 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEF 492 ++ + Q + +A++H ++ Sbjct: 750 EAKRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKRRRYLPEIGSKNFNLRSFAERT 809 Query: 493 AVKDKLIGTACELVKKAWRA 512 A+ + G+A +++K A Sbjct: 810 AMNSPIQGSAADIIKIAMIK 829 Score = 44.0 bits (102), Expect = 0.092, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 38/119 (31%), Gaps = 8/119 (6%) Query: 538 ISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 A+R + + I + + + YL S+ R++ + Sbjct: 749 AEAKRFIETYFQEFPKIHEWMTQIKAKAHEQGFIETIAKRRRYLPEIGSKNFNLRSFAER 808 Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q + DI+ M ++L VHDE++ E P + L Sbjct: 809 TAMNSPIQGSAADIIKIAMIKVADALQENGMQARMLLQVHDELIFEAPSDEIAELSELV 867 >gi|150015687|ref|YP_001307941.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] gi|149902152|gb|ABR32985.1| DNA polymerase I [Clostridium beijerinckii NCIMB 8052] Length = 867 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 94/530 (17%), Positives = 181/530 (34%), Gaps = 103/530 (19%) Query: 44 LWDRTEQSAMPSD-----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 + D + S+ S+ L + D+ V V H+ K I K + + Sbjct: 348 IIDFKDISSKDSEEALKVLKNLMEDDNVKKVIHDGKNFVTFLNK---NQIEIKGFDFDTA 404 Query: 99 LARTNGLPSSLKNACLALNFSEHLTKME---EGKALIARFCKGSIDSPPYDCTRANHVQA 155 +A L S K+ L H EG + A C + Sbjct: 405 IAAY--LIDSSKSKYEILELVNHYIGDNPNSEGSNIKAILC-------------SYLPMV 449 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 ++ E + E +L+ + E L + ++ G+ I+ ++ +LQ + Sbjct: 450 YEKLKENLHK--ENMDQLYY------EVEHPLIYVLSSMESIGFNINQGMLDELQTKFKK 501 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 E K ++I +L D + L LF + ++ ++ + + +L Sbjct: 502 EIDKTQKEIYELADEEF-NISSPKQLGKILFEKLDLPVIKKTK--TGYSTNQEVLEKLMN 558 Query: 276 DLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + I K+N+ L V DGR+ + TGR S QN+ Sbjct: 559 KHDIIPKIMYYRQITKINSTYVEGLKNVVDEDGRIHSNFN-QTVTTTGRLSSTEPNLQNI 617 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVL 389 P + +R I LV D + IE RVL Sbjct: 618 PIKY------------------------EMGREIRKVFIPMEETDILVSCDYSQIELRVL 653 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----- 444 A IAG++ I AF + DI+ T ++ F PI +V+ R+ K + + Y Sbjct: 654 AHIAGDENMIDAFEHHSDIHTKTASEVFKVPIGEVTSLMRSRAKAVNFGIVYGISAFSLA 713 Query: 445 ---------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLW 484 A+ + ++ ++++ +NV + + + + +S + Sbjct: 714 EDLKITKKEAEEYMSIYLERYPKIKEYLENVVDEAKEKGYVLTILNRRRFIPEIKSSNKI 773 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 ++ A+ + G+A +++K A K + +LQ+ +L Sbjct: 774 VKALGDRLAMNAPIQGSAADIIKLAMVNVYNKLNEKELKSELILQVHDEL 823 >gi|284044321|ref|YP_003394661.1| DNA polymerase I [Conexibacter woesei DSM 14684] gi|283948542|gb|ADB51286.1| DNA polymerase I [Conexibacter woesei DSM 14684] Length = 884 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 136/394 (34%), Gaps = 65/394 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E + L D E L + + + G R+D +L+ ++ + E L+ +I +LT Sbjct: 473 QLEERELLPLFDDVELPLVRVLRAMETAGLRLDTELLATIRTRVMDEAVALEREIWELTG 532 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 L LF G+ + T +L + I + Sbjct: 533 EEFMI-GSPQQLGQILFEKLGLSRKRRGKTGYSTDARVLQAIRGEHPVIEKIERWRELTK 591 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 A L+ L +S D RL T A+ TGR S QN+P Sbjct: 592 LASTYLDALPLLISPEDHRLHTTFNQVTAA-TGRLSSTNPNLQNIP-------------- 636 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 I PLG +R+C +A G L+ AD + +E RVLA IAGE+ + F G Sbjct: 637 -------IRTPLG---REIRACFVAEPGNVLISADYSQVELRVLAHIAGEEVLKEIFRRG 686 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 ED++ T A +++ R+ K++ + Y G A + + + Sbjct: 687 EDVHTATAAAILGIDPEQLDAGSRSKAKMVNYGIVYGLSAFGLADRLQIPREEAQEFIDR 746 Query: 462 FSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIG 500 + + F + + + M+ AV + G Sbjct: 747 YLDGFPAVQAFIRTTIEQATDQGYVTTLMGRRRQIPELRARNYQMRQLGERLAVNTVIQG 806 Query: 501 TACELVKKAWRAKHQG----------VLQLWKDL 524 TA +++K A + +LQ+ +L Sbjct: 807 TAADVIKLAMVNADRALHASGLRTRLILQIHDEL 840 >gi|240142593|ref|YP_002967106.1| DNA polymerase I [Methylobacterium extorquens AM1] gi|240012540|gb|ACS43765.1| DNA polymerase I [Methylobacterium extorquens AM1] Length = 957 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 79/487 (16%), Positives = 159/487 (32%), Gaps = 73/487 (14%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF-- 118 + D V + H+ + LG +I + A +GL A + Sbjct: 435 MEDAGVRKIVHDLKGTAKAAGR-LGFEIAGADDVGLMSYALESGLTGHGLPELAARHLGN 493 Query: 119 --SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH-VQAWQLFGEYCKRDVEATRELFK 175 + +G+ + + P A+ ++ W + + T+ +++ Sbjct: 494 AAPDPDALRGQGRGRVDAEAVAPRAAAPVAAQIADAVLRLWTVLAPRLEG--TPTQAVYE 551 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 L E + + + G RID ++ +L +L+ +I +L G + Sbjct: 552 EL------ELPMVPVLARMEAAGVRIDRAVLTELSRDFGATLARLETEIHELGGGPFQI- 604 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAI 289 + LF G+ + + + + +LA +L+ +S Sbjct: 605 GSPKQIGDVLFGRLGLPGGRRTPSG-QWATGATILEELAAAGHALPGRLLDWRRTSKLKS 663 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L A R+ T A+ TGR S N+P + Sbjct: 664 TYADALLSAADRGTDRVHTTFSL-AATTTGRLSSSDPGLHNIPIRT-------------- 708 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R+ +A+ G +++ AD + +E R+LA IA +AFA G DI Sbjct: 709 ----------EEGRRIRAAFVAAEGHRILSADYSQVELRLLAHIADVPRMREAFAEGVDI 758 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T + F P+ V E R K + + Y G A + ++ + Sbjct: 759 HAATASDMFGVPVGAVPGELRRRAKTINFGIVYGISAFGLADRLGIGRQEAAEFIARYFE 818 Query: 465 NVKSTSTF-EDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTAC 503 + E + H +++ + AV + GTA Sbjct: 819 RFPGIRDYVEGTKTFCREHGFVRTLFGRVCHYPGITSGNVSERMGVERQAVNAPIQGTAA 878 Query: 504 ELVKKAW 510 +++++A Sbjct: 879 DIIRRAM 885 >gi|119717230|ref|YP_924195.1| DNA polymerase I [Nocardioides sp. JS614] gi|119537891|gb|ABL82508.1| DNA polymerase I [Nocardioides sp. JS614] Length = 889 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 94/521 (18%), Positives = 167/521 (32%), Gaps = 73/521 (14%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D V H++ + G+ + T+ L+ P L Sbjct: 374 LADPKRPKVLHDAKGPMLALAAW-GLPLAGLD-RDTA-LSAYLARPDQRSYDLADLTVRY 430 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 ++++G A + +D H + + D E RL L Sbjct: 431 LKRELKQGGADDGQLSLDGLDDRNAGEIEMLHAR--AVLDLAAALDDELEERGGTRL--L 486 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 +D E L L + G +D D + L+ A E + E + I + Sbjct: 487 NDIELPLVDLLAKMEQTGIAVDTDHLEALESHFAAEVRDAAEQAFGVIGKEI-NLGSPKQ 545 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLS 296 L+ LF G+ ++ + + + + +L L Sbjct: 546 LQAVLFDELGMPKTKRTKTGYTTDADALQALYVKTEHPFLLHLLRHRDVSRLRQTIEGLL 605 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + V+ DGR+ T A+ TGR S QN+P + Sbjct: 606 KTVAGDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT---------------------- 642 Query: 357 LGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G + L+ AD + IE R++A ++ +D I+AF +G D + T A+ Sbjct: 643 --EEGRRIREGFVVGPGYESLMTADYSQIEMRIMAHLSEDDLLIEAFKSGRDFHSITAAR 700 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471 F+ P D V+ E RA K M L Y A + S + ++ Q Sbjct: 701 VFDVPADDVTVEMRAKIKAMNYGLAYGLSAFGLGQQLGIEPSEARGLMDEYFQTFGGIRD 760 Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + E+ + ++ A+ + G+A +L+K A Sbjct: 761 YLGGVVEEARKAGFTETIWGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADLIKIAM 820 Query: 511 RAKHQGV----------LQLWKDLTEGFACVVQEGGSISAR 541 + + LQ+ +L A QE + R Sbjct: 821 LNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPLEVLVR 861 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 51/137 (37%), Gaps = 11/137 (8%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595 AR + + + + V+ +R+ +++ + G YL TS + R Sbjct: 741 PSEARGLMDEYFQTFGGIRDYLGGVVEEARKAGFTETIWGRRRYLPDLTSDNRQRREMAE 800 Query: 596 KLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 ++ N +Q + D++ M N + ++L VHDE+V E + L Sbjct: 801 RMALNAPIQGSAADLIKIAMLNVDRAIAAAGLASRMLLQVHDELVFEVAPGEQEPLEVLV 860 Query: 649 -SLMTKNPSWAKGLPLK 664 M A +PL Sbjct: 861 REQMGAAADLA--VPLD 875 >gi|167747107|ref|ZP_02419234.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] gi|167654067|gb|EDR98196.1| hypothetical protein ANACAC_01819 [Anaerostipes caccae DSM 14662] Length = 880 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 69/408 (16%), Positives = 135/408 (33%), Gaps = 65/408 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E + + RG +D + + + + ++L E I K + Sbjct: 480 YEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEAGEEF-NINSPK 538 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF ++ ++ T +L IL + + L+ Sbjct: 539 QLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTYADGLA 598 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + D R+ G + TGR S QN+P + Sbjct: 599 NYIGDDERIHGKFN-QTITATGRISSTEPNLQNIPAR----------------------- 634 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G V AD + IE RVLA ++G+ I A+ +DI+ T ++ Sbjct: 635 -VELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSGDKNLIHAYEMEQDIHARTASEV 693 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F PID+VS QR K + + Y G ++ K + ++ + + Sbjct: 694 FGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKEY 753 Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + +S + ++ A+ + G+A +++K A Sbjct: 754 LNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAMI 813 Query: 512 AKHQG----------VLQLWKDLT-EGFACVVQEGGSISARRVANVPR 548 + +LQ+ +L E V+E I R + + + Sbjct: 814 RVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAAK 861 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 10/71 (14%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642 +R +G ++ N +Q + DI+ M K ++L +HDE++ E D+ Sbjct: 787 QRNFGERVAMNSPIQGSAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSE-- 844 Query: 643 SVGTLCSLMTK 653 V + ++T+ Sbjct: 845 -VEEVKGILTR 854 >gi|310641223|ref|YP_003945981.1| DNA polymerase i [Paenibacillus polymyxa SC2] gi|309246173|gb|ADO55740.1| DNA polymerase I [Paenibacillus polymyxa SC2] Length = 884 Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats. Identities = 83/561 (14%), Positives = 171/561 (30%), Gaps = 92/561 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS----SL 109 + + ++L D H+ R GI+ + LA P+ +L Sbjct: 363 TPIREWLADPERKKRGHDLH--RTDLALHWHGIEFAGAEF--DVQLAGYLLDPTDANQTL 418 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK--RDV 167 S E F KG+ P ++HV E + Sbjct: 419 SGLAAKYGLSSIRPDDEV-------FGKGAKYKVPEMDVLSDHVARKAAVIEALVPVQQA 471 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E + +L + E L + + +G ++++ + L + + L +I + Sbjct: 472 ELEKTEMHKLF--HELEMPLSRILADMEKQGILVNVEELRALGKEFEAQIATLVGEIYSI 529 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ ++ ++ + +LA + + Sbjct: 530 AGVEF-NLNSPKQLGEILFDKLGLPVIKKTK--TGYSTDAEVLEKLAPYHDIVQNILQYR 586 Query: 288 AILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 I KL + L E G++ + A+ TGR S QN+P + Sbjct: 587 TIAKLQSTYVEGLLKEISEKTGKVHTYFRQTVAA-TGRLSSQFPNLQNIPIR-------- 637 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + S G ++ AD + IE RVLA I+ ++ + Sbjct: 638 ----------------LEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKE 681 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF + DI+ T + F P + V + R K + + Y G ++ Sbjct: 682 AFVHDMDIHTKTASDVFGVPAEAVDSDMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAA 741 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + Q+ + + D + + + + A+ Sbjct: 742 RFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNQRSFAERTAMN 801 Query: 496 DKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + GTA +++K A ++ + + V + + + Sbjct: 802 TPIQGTAADIIKLAMVQMDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKEL------ 855 Query: 550 VMRRHKRDVHIVLPSSRRLVY 570 V + + + +P + Y Sbjct: 856 VPATMEAALKLAVPLKAEVSY 876 Score = 45.5 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 19/190 (10%) Query: 498 LIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + G E V R + G++ +++ A R + V + Sbjct: 697 VFGVPAEAVDSDMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAARFIDQYFDVFQG 753 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDILC 611 +R + ++ ++R Y + YL + +R++ + N +Q + DI+ Sbjct: 754 VRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNQRSFAERTAMNTPIQGTAADIIK 813 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 M ++L VHDE+V E P ++ L + M A +PLK Sbjct: 814 LAMVQMDAALRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAALKLA--VPLK 871 Query: 665 AE-GYEAKRY 673 AE Y + Y Sbjct: 872 AEVSYGSNWY 881 >gi|299143758|ref|ZP_07036838.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518243|gb|EFI41982.1| DNA polymerase I [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 885 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 90/581 (15%), Positives = 181/581 (31%), Gaps = 97/581 (16%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A +E + + + DE + + HN + I L DI K Sbjct: 341 IAIKVQNEATCIIKIDCKEDILK-FKDVFEDENIEKLGHNLKEDMITL---LNFDINIKN 396 Query: 93 WICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID----------S 142 + S +A + + + F +G D Sbjct: 397 YTHDSEIAEYI--------------LNSTESNYDINNISNTYFSRGYKDLEELLGKGKKK 442 Query: 143 PPYDCTRANHVQAWQLFG---EYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRG 198 + + + + + F Y RDV+ + + + L + E L + ++ G Sbjct: 443 IKFSDLKYDELCKYFSFYLNSVYKLRDVQLEKIRKQEMDDLYFEVELPLIEVLSSMELIG 502 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 R D ++ ++ + + L+ DI + + L + LF G ++ ++ Sbjct: 503 IRTDNAILDEIGIDLDNKILNLENDIYEKAGEEF-NINSPKKLGLILFDKLGYPVLKKTK 561 Query: 259 ---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGA 314 T +L D +L + + L E ++ + G + Sbjct: 562 TGYSTNADVLEKLKKDGDIIDDVLEYRKLAKLKSTYVEGLKELINVATGHIHSHFN-QTI 620 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK 374 + TGR S QN+P + +R ++S G Sbjct: 621 TSTGRISSTNPNLQNIPIKT------------------------DEGKLIRKAFLSSEGC 656 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 LV AD + IE RVLA I+ ++ I AF N +DI+ T AK F + V+ R+ K Sbjct: 657 VLVDADYSQIELRVLADISKDENMISAFENDDDIHRRTAAKVFGVDFEDVTPSLRSRAKA 716 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE----------------- 473 + + Y G ++ ++ + + Sbjct: 717 VNFGIVYGISDYGLSQNLNIPRKLAQEYIENYLLTYDGIKNYMTEEVKLAKKNGYVKTIL 776 Query: 474 ----DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQ 519 + + + ++ A+ + G+A +++K A K + +LQ Sbjct: 777 NRRRYIPELSAKNFNIRSFGERIAINTPIQGSAADIIKIAMVKVYRALKENNLKSKLILQ 836 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 + +L E R + ++ + K D+ Sbjct: 837 IHDELIVDAREDEVETVKKLMRNIMENAVEMVVKLKVDMQT 877 Score = 45.1 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 546 VPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQA 604 + +V + + + + Y+ +++ R++G ++ N +Q Sbjct: 751 TYDGIKNYMTEEVKLAKKNGYVKTILNRR---RYIPELSAKNFNIRSFGERIAINTPIQG 807 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS-LM 651 + DI+ M + ++L +HDE++ + + +V L +M Sbjct: 808 SAADIIKIAMVKVYRALKENNLKSKLILQIHDELIVDAREDEVETVKKLMRNIM 861 >gi|168493726|ref|ZP_02717869.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225853660|ref|YP_002735172.1| DNA polymerase I [Streptococcus pneumoniae JJA] gi|183576083|gb|EDT96611.1| DNA polymerase I (POL I) [Streptococcus pneumoniae CDC3059-06] gi|225723914|gb|ACO19767.1| DNA polymerase I (POL I) [Streptococcus pneumoniae JJA] Length = 877 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRY-MQDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPDIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|323443495|gb|EGB01111.1| phage related DNA polymerase family A [Staphylococcus aureus O46] Length = 225 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 113/271 (41%), Gaps = 58/271 (21%) Query: 416 AFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 FN P++ ++K R GKV ELALGYQGGA K M Sbjct: 1 MFNVPVESITKGDPLRQKGKVSELALGYQGGAGALKAMG--------------------- 39 Query: 474 DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQ 533 A++ + + + +WR + ++ WK E Sbjct: 40 -------------------ALEMGIEENELQGLVDSWRNANPNIVNFWKACQEAAI---- 76 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTAT-------- 584 ++ +R+ + L K + I LPS R L Y G+ S+ + Sbjct: 77 --NTVKSRKTHHTHGLRFYMKKGFLMIELPSGRALAYPKASVGENSWGSQVVEFMGLDLN 134 Query: 585 SQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSV 644 + + +TYGGKL ENIVQA +RD+L + +G+ IV VHDE++ E P + Sbjct: 135 RKWSKLKTYGGKLVENIVQATARDLLAISIARLEASGFKIVGHVHDEVIVEIPRGSNG-L 193 Query: 645 GTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 + ++M K WAKGL L ++G+ + Y K Sbjct: 194 KEIETIMNKPVDWAKGLNLNSDGFTSPFYMK 224 >gi|228941766|ref|ZP_04104313.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974690|ref|ZP_04135256.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981284|ref|ZP_04141584.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228778484|gb|EEM26751.1| DNA polymerase I [Bacillus thuringiensis Bt407] gi|228785093|gb|EEM33106.1| DNA polymerase I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817978|gb|EEM64056.1| DNA polymerase I [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 891 Score = 225 bits (572), Expect = 2e-56, Method: Composition-based stats. Identities = 76/496 (15%), Positives = 166/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L + + ++ + K GID+ + ++A L A Sbjct: 370 DAFKAWLANGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E + K+++++I Sbjct: 474 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 808 NTPIQGTAADIIKKAM 823 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|257083792|ref|ZP_05578153.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300859704|ref|ZP_07105792.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] gi|256991822|gb|EEU79124.1| DNA polymerase A [Enterococcus faecalis Fly1] gi|300850522|gb|EFK78271.1| DNA-directed DNA polymerase [Enterococcus faecalis TUSoD Ef11] Length = 848 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 326 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 380 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 381 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 439 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 440 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 498 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 499 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 558 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 559 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 600 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 601 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 652 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G ++ + + Sbjct: 653 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 712 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 713 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 772 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 773 ADILKIAMIE 782 >gi|188496446|ref|ZP_03003716.1| DNA polymerase [Escherichia coli 53638] gi|188491645|gb|EDU66748.1| DNA polymerase [Escherichia coli 53638] gi|323173133|gb|EFZ58764.1| DNA polymerase 1 [Escherichia coli LT-68] Length = 231 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 11/236 (4%) Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 F T A LDL + + + +A+S + + + + +++ AC+ Sbjct: 1 MSAFITFALVYSLDLDELANAALPNIPRDVIREAKSWYYESVKRKSTYGLSERVF-IACD 59 Query: 505 LVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPS 564 +K+ WR H W +L + + ++ L +RR + I LPS Sbjct: 60 SLKRLWRRAHPATCDFWYELERTVRTAI-----ATPQKTLYCGYLKIRRDGAWLRIQLPS 114 Query: 565 SRRLVYSDV---KGDCSYL--NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK 619 R + Y KG+ +Y+ N+ + + R +TYGGKL EN+ QA +RD+L M Sbjct: 115 GRAVCYPSPVIEKGNITYMGVNSYSRKWQRLKTYGGKLVENVTQAAARDVLAGNMPLIED 174 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 GY IVLTVHDEI+SE PD+P +S + L+ P WA +PL A G+E+ RYRK Sbjct: 175 AGYSIVLTVHDEIISEAPDSPDYSAEHVSQLLATVPDWATSIPLNAGGFESYRYRK 230 >gi|269797839|ref|YP_003311739.1| DNA polymerase I [Veillonella parvula DSM 2008] gi|269094468|gb|ACZ24459.1| DNA polymerase I [Veillonella parvula DSM 2008] Length = 873 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 76/419 (18%), Positives = 137/419 (32%), Gaps = 64/419 (15%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 L RF SI S D + V+A E A RE L E L Sbjct: 425 YLTERFSVPSIASGSVDVECVSMVKALLAMNEAACE--SARREELWSLYE--TIELPLIH 480 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + G ID + + + +E ++ ++I +L + L + LF Sbjct: 481 TLVVMEKNGIYIDTEKLAETTTRFKEELAQVQQEIYELAGENF-NINSPKQLGVILFEKM 539 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSSDGR 304 + ++ ++ + L + + + ++ KL L+ ++ R Sbjct: 540 NLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTR 597 Query: 305 -LRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 + T + TGR S QN+P + Sbjct: 598 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 632 Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ G LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ D Sbjct: 633 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKAQD 692 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ E+R+ K + + Y G ++ + + + D Sbjct: 693 DVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 752 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 E+H + + A+ + GTA +++K A Q Sbjct: 753 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQMEQK 811 >gi|755588|gb|AAA85558.1| DNA polymerase [Geobacillus stearothermophilus] Length = 954 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 79/492 (16%), Positives = 163/492 (33%), Gaps = 60/492 (12%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS 108 E + L +L DET +S + GI++ + +LA P+ Sbjct: 425 ETAVADPKFLAWLGDETKKKTMFDSKRAAVAL-NGKGIELAGVGVVFDLLLAAYLLDPAQ 483 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 A+ + + E ++ A + KG+ + P + T A + + + Sbjct: 484 AAGDVAAV---AKMHQYEAVRSDEAVYGKGAKRTVPDEPTLAEQLVRKAAAIWALEEPLM 540 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 ++ L++ E L + + G ++D + ++ + ++ + ++ I +L Sbjct: 541 DELRRNEQDRLLTELEHALAGILANMEFTGVKVDTKRLEQMGAELTEQLQAVERRIYELA 600 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + ++ ++ T +L + IL+ Sbjct: 601 GQEF-NINSPKQLGTVLFDKLQLPVLKKTKTGYSTSADVLEKLAPHHEIVEHILHYRQLG 659 Query: 286 GSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L + V G++ ++TGR S QN+P + Sbjct: 660 KLQSTYIEGLLKVVHPVTGKVHTMFN-QALTQTGRLSSVEPNLQNIPIR----------- 707 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFA 403 +R + S L+ AD + IE RVLA IA +D I+AF Sbjct: 708 -------------LEEGRKIRQAFVPSEPDWLIFAADYSQIELRVLAHIAEDDNLIEAFR 754 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 DI+ T F+ + V+ R K + + Y G A+ + Sbjct: 755 RWLDIHTKTAMDIFHVSEEDVTANMRRQAKAVNFGIVYGISDYGLAQNLNITRKEAAEFI 814 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 +++ + + D S + ++ A+ + Sbjct: 815 ERYFASFPGVKQYMDNIVQEAKQKGYVTTLLHRRRYLPDITSRNFNVRTFAERTAMNTPI 874 Query: 499 IGTACELVKKAW 510 G+A +++KKA Sbjct: 875 QGSAADIIKKAM 886 Score = 38.2 bits (87), Expect = 4.4, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 591 RTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS 643 RT+ + N +Q + DI+ + M + + ++L HDE++ E P Sbjct: 862 RTFAERTAMNTPIQGSAADIIKKAMIDLSVSVREERLQARLLLQGHDELILEAPKEEIGR 921 Query: 644 VGTLC-SLMTKN 654 + L +M + Sbjct: 922 LCRLVPEVMEQA 933 >gi|229135422|ref|ZP_04264209.1| DNA polymerase I [Bacillus cereus BDRD-ST196] gi|228647983|gb|EEL04031.1| DNA polymerase I [Bacillus cereus BDRD-ST196] Length = 891 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 78/496 (15%), Positives = 168/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ + K G+DI + ++A L A Sbjct: 370 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYL-----LDPADT 421 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 422 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPGLEVVAEHVARKVHVLYDVK 473 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D D + + E +A K+++++I Sbjct: 474 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTDRLRNMGEELAGRLKEMEQEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 534 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 592 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 593 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 644 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 645 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIAKDPGLV 687 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 688 EAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 747 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + D + S + ++ A+ Sbjct: 748 AEFIEKYLESFPGVQEYMDEIVKDAKQKGYVVTLLNRRRYIPEITSRNFNLRSFAERTAM 807 Query: 495 KDKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 808 NTPIQGSAADIIKKAM 823 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 702 MDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 761 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 V + + + Y+ TS+ R++ + N +Q + DI Sbjct: 762 QEYMDEIVKDAKQKGYVVTLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGSAADI 818 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 819 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEKLVPEVMEHAIELA--VP 876 Query: 663 LKAE 666 LK + Sbjct: 877 LKVD 880 >gi|315165261|gb|EFU09278.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1302] Length = 882 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G ++ + + Sbjct: 687 HASTAMRVFGVEKAEDVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQAQQYIDTYF 746 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 807 ADILKIAMIE 816 >gi|296127550|ref|YP_003634802.1| DNA polymerase I [Brachyspira murdochii DSM 12563] gi|296019366|gb|ADG72603.1| DNA polymerase I [Brachyspira murdochii DSM 12563] Length = 926 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 94/593 (15%), Positives = 191/593 (32%), Gaps = 102/593 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-----LLQY 60 +D ET G+ + + I ++A D + ++ + D + + Sbjct: 360 VDFET--------TGLDVFKD--TIIGISFAIRSNEAFYLDVSGRTNIDKDKCIDMVFET 409 Query: 61 LRDETVMCVAHNSLFERIL---FKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACL 114 L E + + HN +E + K+ G T V A + + + Sbjct: 410 LAKEDIKVIGHNLKYEYKMMRAINKSFGNMYF-----DTMVAAYLINPTRGRYNMDDLAI 464 Query: 115 A-LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRDVEATRE 172 A L+++ A D Y C A+ + ++ F K T Sbjct: 465 AYLSYNTIKYSDITDNAKKTLLDVPLKDVVEYACEDADITFRFYECFAPLLK-----THN 519 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L + + E L + + G I + + L + + +K + I Sbjct: 520 LEELFF---NIEMPLVSVLADMEFDGVYISSEKMKALSDEYSSLLEKTKKKIYAEAGEEF 576 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + + L LF GI ++ T + +L+ + + +L + Sbjct: 577 -NIQSPKQLEYILFDKMGIPPTKKTKTGFSTDEEVLTELSQKYKIAEYMLTYRKYAKLKN 635 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 L+ ++ GR+ + + TGR S QN+P Sbjct: 636 TYLDVFPTLINEKTGRIHASFN-QTVTATGRLSSSEPNLQNIP----------------- 677 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 G +R+ IA G L+ AD + IE R+LA + + ++AF N +DI Sbjct: 678 -------VRGEEGREIRNTFIAEKGNLLIAADYSQIELRLLAHFSNDPALVEAFKNNDDI 730 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T K ++ + V+ R I K++ ++ Y G +K ++ + Sbjct: 731 HRKTAMKIYSVSKEHVTASMRNIAKIINFSIIYGKTAFGLSKELGIKRKEAEDFIKGYFS 790 Query: 465 NVKSTSTFEDWEQAE----------------------SHHLWMQDQYPEFAVKDKLIGTA 502 F + E S + +++ A+ + G+A Sbjct: 791 TYSRVKPFCEEVVEEVRNKGYVRTMCGRIRDLSKTINSSNAMARNEAERMALNTLIQGSA 850 Query: 503 CELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +++K A A H+ V+Q+ +L + + + + Sbjct: 851 ADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAMTIMKEIME 903 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650 ++Q + D++ M K IV+ VHDE+V E + T+ + Sbjct: 842 LNTLIQGSAADMIKVAMVAIHKEFKNHFKTAKIVMQVHDELVVEVSEKEADKAMTIMKEI 901 Query: 651 M 651 M Sbjct: 902 M 902 >gi|217964288|ref|YP_002349966.1| DNA polymerase type I [Listeria monocytogenes HCC23] gi|217333558|gb|ACK39352.1| DNA polymerase type I [Listeria monocytogenes HCC23] Length = 875 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 62/482 (12%) Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 V +++ + + I + +LA PS + ++ Sbjct: 366 TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 419 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E + A + KG+ S P + A+H+ + ++ + A E ++L + D E Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELP 479 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + +G +D + + ++ +A K L+E I L + L + LF Sbjct: 480 LTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEAF-NINSPKQLGVILF 538 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302 G+ V ++ T +L + D IL + L + Sbjct: 539 EKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKET 598 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 ++ ++TGR S QN+P + Sbjct: 599 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 633 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 634 KIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 693 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474 D+V R K + + Y G ++ + ++ + + + Sbjct: 694 DEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIV 753 Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + S + ++ A+ + G+A +++KKA + Sbjct: 754 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSER 813 Query: 517 VL 518 ++ Sbjct: 814 LV 815 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M K ++L VHDE++ E P+ + + Sbjct: 795 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847 >gi|150021780|ref|YP_001307134.1| DNA polymerase I [Thermosipho melanesiensis BI429] gi|149794301|gb|ABR31749.1| DNA polymerase I [Thermosipho melanesiensis BI429] Length = 890 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 109/581 (18%), Positives = 202/581 (34%), Gaps = 95/581 (16%) Query: 2 SKLFIDIETRSPQPLPK--VGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 ID ET S P VGV + AY V + T+ + L + Sbjct: 318 KTFSIDTETTSLDPFSAKLVGVSISTNEGE----AYYIPISHVSENNLTK-EIVLKFLKE 372 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L E V N F+ +F + I + +++A P + L Sbjct: 373 ILECERYNIVGQNLKFDYKVF---MVNGIEPQIPHFDTMVAAYLINPEERRYNLEELALK 429 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 KM + L+ ++ P + + + EY DV+ T L+ L Sbjct: 430 YLGYKMISFEELVD-------NNMPLFGNDFSFISI-EKAAEYSCEDVDITFRLYSYLSK 481 Query: 180 LS--------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + E L + + G D+D + +L + +E KKL+E I +++ Sbjct: 482 YIGEMKELFYNIEMPLINVLAQMELNGVYFDVDYLKELSKRYEEEMKKLEEKIFEISGEQ 541 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + + + LF + +V + T ++ + + +LAKD + RL K Sbjct: 542 F-NINSSKQVAEILFEKLKLPIVKKT-ATGRNSTNAEVLEELAKDYEIARLILEYRKFQK 599 Query: 292 L-----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L +++ +V+ + R+ + G + TGR S QNLP + Sbjct: 600 LKSTYVDSIPSSVNITTNRVHSSFHQTG-TSTGRLSSSAPNLQNLPTRS----------- 647 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + +V AD + IE RVLA ++ ++ + AF N Sbjct: 648 -------------EEGKEIRHAVKPQFENWYIVGADYSQIELRVLAHMSEDEKLLDAFEN 694 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 DI+ T +K FN V+++ R IGK++ A+ Y G ++ + + Sbjct: 695 DYDIHTITASKIFNVSELMVTEDMRRIGKMINFAIIYGISPYGLSRRIGLNVNETKKIID 754 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 + + + F Q + + + + A+ + Sbjct: 755 NYFKYYQGVFEFIKKTIDFAKKNGFVKTLFGRKRFIPQLKLKNKNLIQEGERIAINTPVQ 814 Query: 500 GTACELVKKAWRAKH----------QGVLQLWKDLTEGFAC 530 GTA +++K A H + +LQ+ +L Sbjct: 815 GTAADIIKIAMVKVHNELKRNSLKTKLILQVHDELVFEVPF 855 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 17/116 (14%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLT 598 + V + + K++ + R+ +K L G ++ Sbjct: 759 YYQGVFEFIKKTIDFAKKNGFVKTLFGRKRFIPQLKLKNKNLIQE----------GERIA 808 Query: 599 ENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 N VQ + DI+ M ++L VHDE+V E P V + Sbjct: 809 INTPVQGTAADIIKIAMVKVHNELKRNSLKTKLILQVHDELVFEVPFDELQIVKEI 864 >gi|307571146|emb|CAR84325.1| DNA polymerase I [Listeria monocytogenes L99] Length = 885 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 62/482 (12%) Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 V +++ + + I + +LA PS + ++ Sbjct: 376 TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 429 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E + A + KG+ S P + A+H+ + ++ + A E ++L + D E Sbjct: 430 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELP 489 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + +G +D + + ++ +A K L+E I L + L + LF Sbjct: 490 LTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEAF-NINSPKQLGVILF 548 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302 G+ V ++ T +L + D IL + L + Sbjct: 549 EKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKET 608 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 ++ ++TGR S QN+P + Sbjct: 609 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 643 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 644 KIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 703 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474 D+V R K + + Y G ++ + ++ + + + Sbjct: 704 DEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIV 763 Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + S + ++ A+ + G+A +++KKA + Sbjct: 764 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSER 823 Query: 517 VL 518 ++ Sbjct: 824 LV 825 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M K ++L VHDE++ E P+ + + Sbjct: 805 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 857 >gi|149195468|ref|ZP_01872548.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] gi|149134383|gb|EDM22879.1| DNA polymerase I [Caminibacter mediatlanticus TB-2] Length = 873 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 95/570 (16%), Positives = 179/570 (31%), Gaps = 111/570 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSDL-L 58 D ET S E I ++A+++ + + L Sbjct: 324 SFDTETTS------------LENPKIVGFSFAFEENKAYYVPINHFYLGVSKQIDEKIAL 371 Query: 59 QYLRDETVMCV-AHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + + V HN F+ + K P L + Sbjct: 372 KAIEKILEKKVIGHNLKFDFKMLKDYKIKTPTPFADTMILGWIIDPDSPVGLDSLAK-RY 430 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + K +E F + I + +Y D T +L++ L Sbjct: 431 LNHQNIKYKEIVGKNQNFSEIDIKTAA----------------KYASEDAIITLKLYEVL 474 Query: 178 ---------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + + E L + + G ++D++ + KLQ+ + Q+ + L ++I L Sbjct: 475 KEKTWEEVKWDIENIEMPLINILIDMEKEGIKVDIEYLEKLQKELTQKLENLTKEIYNLA 534 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + + L LF + + + ++ T + +L+ T + +L Sbjct: 535 GSEF-NIKSPKQLSHILFKVLKLPVKKKTKTGYSTDEKVLNSLKNTHPIIEKLLEYRKFD 593 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQF-YGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + L E D + F + TGR S QN+P Sbjct: 594 KLLTTYIIPLKEYAKKDKNQKVYTNFLQTGTATGRLSSKNPNLQNIPTSTEIN------- 646 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R+ I K + D + IE R+LA + + I+AF N Sbjct: 647 -------------------IRNAFI--TDKLFISLDYSQIELRLLAHFSKDPHLIEAFLN 685 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQ 460 +DI++ T AK F + +KE R+I K + L Y G K ++ Sbjct: 686 DKDIHLETAAKIFG---EDKAKEYRSIAKSINFGLIYGMGPKKLSETINVSTKEAKEFIE 742 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIG 500 ++ +N + F + + E+ + Y AV G Sbjct: 743 KYFENFSTVKDFIEKTKVETKEKGYVETLFKRRRFFDFNSANARTLAAYEREAVNTIFQG 802 Query: 501 TACELVKKAWRA------KHQGVLQLWKDL 524 +A +++KKA + +LQ+ +L Sbjct: 803 SAADIIKKAMIDIKNKFPSSKMILQIHDEL 832 Score = 40.9 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 3/75 (4%) Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN--GYDIVLTVHDEIVSE 635 + + ++ Y + I Q + DI+ + M + ++L +HDE++ E Sbjct: 776 RFFDFNSANARTLAAYEREAVNTIFQGSAADIIKKAMIDIKNKFPSSKMILQIHDELIFE 835 Query: 636 TP-DTPYFSVGTLCS 649 + + Sbjct: 836 IDNKDEAYEYKEIME 850 >gi|290893966|ref|ZP_06556942.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] gi|290556504|gb|EFD90042.1| DNA polymerase I [Listeria monocytogenes FSL J2-071] Length = 875 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 62/482 (12%) Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 V +++ + + I + +LA PS + ++ Sbjct: 366 TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 419 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E + A + KG+ S P + A+H+ + ++ + A E ++L + D E Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELP 479 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + +G +D + + ++ +A K L+E I L + L + LF Sbjct: 480 LTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILF 538 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302 G+ V ++ T +L + D IL + L + Sbjct: 539 EKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKET 598 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 ++ ++TGR S QN+P + Sbjct: 599 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 633 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 634 KIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 693 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474 D+V R K + + Y G ++ + ++ + + + Sbjct: 694 DEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIV 753 Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + S + ++ A+ + G+A +++KKA + Sbjct: 754 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSER 813 Query: 517 VL 518 ++ Sbjct: 814 LV 815 Score = 44.3 bits (103), Expect = 0.075, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M K ++L VHDE++ E P+ + + Sbjct: 795 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847 >gi|304316561|ref|YP_003851706.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778063|gb|ADL68622.1| DNA polymerase I [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 867 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 83/538 (15%), Positives = 183/538 (34%), Gaps = 88/538 (16%) Query: 39 DEPVKLWDRTEQ------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 + VK ++ + L +E + + H+ + + GI++ K Sbjct: 322 EGEVKAVSFATDDESFFVEVDDYEVFKLLDNEKLTLIGHDIK-DFFVNLSYHGIELNCK- 379 Query: 93 WICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPPYD 146 + T+++ S + L + +GK+ + Y Sbjct: 380 FYDTAIMTYLLNPSESNYDIGRVLKKYLKEDIPNIEDMLGKGKSKKSYDDIDKKLLIDYL 439 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 C A+ + + +++E L E L + +++ G+ +D D++ Sbjct: 440 CATASKLSKLKDKLMSFIKEMEMEELLDN-------VELPLVEVLKSMEVYGFTLDKDVL 492 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LK 262 L + I ++ K+ +DI + T L +LF + + ++ ++ Sbjct: 493 KDLSKEIGEKTDKIIKDIYDAAGYEF-NINSTKQLSEFLFDKLNLPPIKKTKTGYSTDME 551 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSG 322 ++ ++ ++I R + ++ + D ++ T + A+ TGR S Sbjct: 552 VLVELIPYNEIVGEIIEYRQLMKLKST-YIDGFMPIMDKDDKVHSTFKQTVAA-TGRISS 609 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P +R I+S G +V AD Sbjct: 610 TEPNLQNIP------------------------VRDEFGRRIRKAFISSFQGGYIVSADY 645 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA ++ + I++F N EDI++ T ++ F ++V+ E R K + + Y Sbjct: 646 SQIELRVLAHLSEDIKLIESFLNNEDIHLRTASEVFKIAPEEVTGEMRRRAKAVNFGIVY 705 Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WE 476 G ++ K + + K + D Sbjct: 706 GISDYGLSRDLKISRKEAKEYIDNYFDRYKGVKNYIDSVVKFARENGYVTTILNRRRYIP 765 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + S + + A+ + G+A +++K + K + +LQ+ +L Sbjct: 766 EINSKNYNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKSRSLKSKLILQIHDEL 823 >gi|213965256|ref|ZP_03393453.1| DNA polymerase I [Corynebacterium amycolatum SK46] gi|213952108|gb|EEB63493.1| DNA polymerase I [Corynebacterium amycolatum SK46] Length = 881 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 69/424 (16%), Positives = 139/424 (32%), Gaps = 73/424 (17%) Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + + +D E L + + G +D+D + +L++ + Sbjct: 461 AERLAVELDEAGLYSVYADLEVPLAPVLGRMERAGIAVDVDALEELRKQAQAATDDAESA 520 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQL 273 L D + L+ LF G+ ++ L + H + L Sbjct: 521 ARNLVDKPELNLGSPKQLQEVLFDQLGMPKTKKTKTGYSTAAKEIEGLAKVNPHPFLDYL 580 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 K ++ S+ + L +AV+ DGR+ T A+ TGR S QN+P + Sbjct: 581 LKFRESQKMKST------VEGLIKAVADDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVR 633 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392 +R + G +L+ AD + IE RV+A + Sbjct: 634 T------------------------EFGRRIREAFVVGEGYAQLITADYSQIEMRVMAHL 669 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 + + I+A+ GED++ +K F ID+V+ E R K M L Y G A+ Sbjct: 670 SQDPGLIEAYRQGEDLHNYVGSKVFGVGIDEVTPELRRRVKAMSYGLAYGLSAFGLAQQL 729 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQD 487 ++ + + + ++ + +D Sbjct: 730 DIPQREAKKLMEDYFERFGGVRDYLHKVVEQARKDGFTATMFDRRRYLPELNADNRIARD 789 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISAR 541 A+ + G+A +++K A ++ + + V +G + + Sbjct: 790 NAERAALNSPIQGSAADIIKIAMLRVDDALRRGGLRSRVLLQVHDELVVEVADGEEAAIK 849 Query: 542 RVAN 545 + + Sbjct: 850 ELLH 853 >gi|315174878|gb|EFU18895.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1346] Length = 882 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G ++ + + Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITREQAQQYIDTYF 746 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 807 ADILKIAMIE 816 >gi|289644114|ref|ZP_06476209.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] gi|289506083|gb|EFD27087.1| DNA polymerase I [Frankia symbiont of Datisca glomerata] Length = 932 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 73/423 (17%), Positives = 134/423 (31%), Gaps = 62/423 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E L + + G D D +L LQ+ + ++ ++ S Sbjct: 529 LRDVELPLVTVLAGMERAGIAADTDHLLDLQKHYGAQVTEVAAQAQEIVGRPFNLS-SPK 587 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L++ LF G+ + + D L + + +L ++L Sbjct: 588 QLQVILFDELGLPKTKKIKTGYTTDADALAWLSTQADHPLLAVLLRHRDVARLRTVVDSL 647 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + GR+ T A+ TGR S QN+P + Sbjct: 648 IPMIDDAGRVHTTFNQMIAA-TGRLSSADPNLQNIPVRT--------------------- 685 Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + L+ AD + IE R++A ++G+ I AFA+GED++ A Sbjct: 686 ---AEGRQIRRAFVVGAGYESLLTADYSQIEMRIMAHLSGDKGLIGAFASGEDLHTFVAA 742 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 +AF P+D+V E R K M L Y G A ++ + Sbjct: 743 QAFGIPVDEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIHPEEAREQMEAYFARFGGVR 802 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 F S + + A+ + G+A +++K A Sbjct: 803 DFLRGVVERARADGYTETILGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIKIA 862 Query: 510 W------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 +H +L + + + G + + + + + Sbjct: 863 MLGVDRKLREHGARSRLLLQVHDELVLEIAPGERADVEALVRTEMGGAYQMSVPLEVSVG 922 Query: 564 SSR 566 S R Sbjct: 923 SGR 925 >gi|76798043|ref|ZP_00780300.1| DNA polymerase I [Streptococcus agalactiae 18RS21] gi|76586602|gb|EAO63103.1| DNA polymerase I [Streptococcus agalactiae 18RS21] Length = 811 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 72/487 (14%), Positives = 153/487 (31%), Gaps = 69/487 (14%) Query: 57 LLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L + L + + F+R + ID+P + + LA+ + Sbjct: 358 LQEALFKKALSKPIKTYDFKRSKVLLNRFNIDLPEPAF--DTRLAKYLLSTTEDNLVSTI 415 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174 +L + + KG+ + P H+ + ++L Sbjct: 416 ARLYTNLPLDTDDAV----YGKGAKRAIPEKTRFLEHLAK--KVKVLVDSEANIMQQLKA 469 Query: 175 -KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ L + E+ L + + RG ++ + + ++ + + L ++I +L Sbjct: 470 NEQEELLFEMEQPLANVLAKMEIRGIKVKKNTLNEMAIENQKVIETLTQEIYELAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF G+ + + + + +LA L I KL Sbjct: 529 NINSPKQLGKLLFETLGLPVEMTKKTKTGYSTAVDVLERLAPISPLVTKILEYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + DG++ ++TGR S QN+P Sbjct: 589 STYIIGLQDYILEDGKIHTRYV-QDLTQTGRLSSSDPNLQNIP----------------- 630 Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + S L+ +D + IE RVLA I+ ++ I AF G D Sbjct: 631 -------VRLEQGRLIRKAFVPSEDNAVLLSSDYSQIELRVLAHISKDEHLIAAFKEGAD 683 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F + V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIEKPENVTPNDRRNAKAVNFGIVYGISDFGLSHNLGIPRKLAKQYIDTY 743 Query: 463 SQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKNYMETVVREAKDKGYVETLFHRRRSLPDINSRNFNIRQFAERTAINSPIQGS 803 Query: 502 ACELVKK 508 A +++K Sbjct: 804 AADILKM 810 >gi|257869278|ref|ZP_05648931.1| DNA polymerase A [Enterococcus gallinarum EG2] gi|257803442|gb|EEV32264.1| DNA polymerase A [Enterococcus gallinarum EG2] Length = 881 Score = 225 bits (572), Expect = 3e-56, Method: Composition-based stats. Identities = 66/515 (12%), Positives = 163/515 (31%), Gaps = 87/515 (16%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D E + +L++ + +++ + + + + ++LA Sbjct: 354 DLFENEY----FIAWLKNASSQKKVYDAKRTYVALNRY---AAAPQGIVFDTLLAAYLLD 406 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 + + ++H KG P D ++F + R Sbjct: 407 TN--DSNNDIAGVAKHYGFYAIQSDEAIY-GKGVKRGLPADE---------EVFFAHLAR 454 Query: 166 DVEA----------TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 V A + +D E L + + G R+D + +++ A+ Sbjct: 455 KVAAINYLSVRLAKELAEKNQTALFTDMELPLSKILAEMEITGIRVDASRLHQMKGEFAE 514 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNIT 271 ++++ I + + L + LF G+ ++ ++ + + Sbjct: 515 RLHEIEQKIYQEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQA 573 Query: 272 QLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + +D+++ R + + + L + + DG++ ++TGR S QN+P Sbjct: 574 PIVEDILIYRQIAKIQST-YVEGLLKVIQGDGKVHTRYV-QTLTQTGRLSSVDPNLQNIP 631 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLA 390 + +R + + +D + IE RVLA Sbjct: 632 IR------------------------LEEGRKIREAFVPRAKDWVIYSSDYSQIELRVLA 667 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGA 445 I+ ++ AF G+DI+ +T + F ++V+ R K + + Y G + Sbjct: 668 HISNDEHLKAAFVEGQDIHSSTAMRVFGISTPEEVTPNMRRQAKAVNFGIVYGISDYGLS 727 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLW 484 + + + + T+ + S + Sbjct: 728 QNLGITRKAAQQYIDTYFEKYPGVKTYMEEVVREAKDKGYVETLYHRRRYLPDINSRNFN 787 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ A+ + G+A +++K A + + + Sbjct: 788 LRTFAERTAINTPIQGSAADILKIAMIDLDRRLKE 822 Score = 45.1 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 8/70 (11%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYF 642 RT+ + N +Q + DIL M + + ++L VHDE+V E P+ Sbjct: 788 LRTFAERTAINTPIQGSAADILKIAMIDLDRRLKEEKLQATMLLQVHDELVFEVPEDELE 847 Query: 643 SVGTLC-SLM 651 + L +M Sbjct: 848 RLDALVKEVM 857 >gi|237785407|ref|YP_002906112.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] gi|237758319|gb|ACR17569.1| DNA polymerase I [Corynebacterium kroppenstedtii DSM 44385] Length = 925 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 74/424 (17%), Positives = 153/424 (36%), Gaps = 75/424 (17%) Query: 154 QAWQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVL 207 W ++ + +E EL K+L + E L + + G +++ + + Sbjct: 489 PEWAKLADHAEAPLELAEELAKKLDKAGLYSIYENLEIPLVPILFGMERAGIKVNRERMT 548 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 L++ A++ K E+ L D + L+ LF ++L + + Sbjct: 549 ALRDSTAEKLAKEVEEARALVDMPKLNLGSPKQLQEVLFDK--LELSKTKKTKTGYSTAA 606 Query: 268 SNITQLAKDLILNRLA--SSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 I +LA+ L + K L+ L +A++SDGR+ T A+ TGR S Sbjct: 607 KAIERLAEKHPHPFLDHLLAHREYQKRVSTLDGLIKAIASDGRIHTTFN-QTATATGRLS 665 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R+ + G + L+ AD Sbjct: 666 STDPNLQNIPVRT------------------------EEGRQIRAAFVPGEGYEALLTAD 701 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RV+A + + I+A+ +GED++ ++ F+ P+++V+ E R K + L Sbjct: 702 YSQIEMRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVPVNEVTPELRRRVKALSYGLV 761 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------- 481 Y G ++ + ++ + + + + Sbjct: 762 YGLSEYGLSQQLDISVREAKKIMVKYFERFGGVRRYLNEVVDRARKDEYTSTMLGRRRYL 821 Query: 482 ------HLWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLT 525 + ++ A+ + GTA +++K A + + +LQ+ +L Sbjct: 822 SDLASLNRQARENAERAALNAPIQGTAADIIKVAMIRVDAALKKEKLASRVLLQVHDELD 881 Query: 526 EGFA 529 A Sbjct: 882 VEVA 885 Score = 44.0 bits (102), Expect = 0.080, Method: Composition-based stats. Identities = 48/306 (15%), Positives = 105/306 (34%), Gaps = 35/306 (11%) Query: 387 RVLAW------IAGEDWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGK 433 +LA ++ D IKA A+ I+ T + P + + G+ Sbjct: 623 HLLAHREYQKRVSTLDGLIKAIASDGRIHTTFNQTATATGRLSSTDPNLQNIPVRTEEGR 682 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + A G + T A + ++++ + + E + E H ++ Q + Sbjct: 683 QIRAAFVPGEGYEALLT-ADYSQIEMRVMAHFSQDRGLIEAYRSGEDLHNFVGSQVFDVP 741 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 V + +++ +A G++ L+E + A+++ Sbjct: 742 VNEVTPE-----LRRRVKALSYGLV---YGLSEYGLSQQLDISVREAKKIMVKYFERFGG 793 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE-RTYGGKLTENI-VQAISRDILC 611 +R ++ V+ +R+ Y+ + + L R+ R + N +Q + DI+ Sbjct: 794 VRRYLNEVVDRARKDEYTSTMLGRRRYLSDLASLNRQARENAERAALNAPIQGTAADIIK 853 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPSWA----KG 660 M ++L VHDE+ E + V + M + A G Sbjct: 854 VAMIRVDAALKKEKLASRVLLQVHDELDVEVANGELEQVRGIIQREMDEAIELAVPLEVG 913 Query: 661 LPLKAE 666 + + A+ Sbjct: 914 MAVGAD 919 >gi|33861696|ref|NP_893257.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640064|emb|CAE19599.1| DNA polymerase I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 976 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 83/538 (15%), Positives = 167/538 (31%), Gaps = 98/538 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA- 115 L ++ N F+R +F + + ++LA Sbjct: 439 LRSWIESPEKEKTLQNCKFDRQIF---YNHGLNLRGVTFDTLLADYILNNQEKHGLSEIS 495 Query: 116 ---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGE-YCKRDVEATR 171 F K GK F + S + ++F E + + + T Sbjct: 496 FREFGFKPPTFKETVGKNKDFSFVDINDASTYCGYDVLLTFKIAKIFKERFNNENKDLT- 554 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L + E L + + G RID + +L + + ++E++ ++ Sbjct: 555 ----KLFK--EIELPLEPVLSEMEMNGIRIDTTYLNELSGELKSTLENIEENVFEIAKQE 608 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 S L LF +D + + +L ++ + + K Sbjct: 609 FNLS-SPKQLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPFLIKHRTLSK 667 Query: 292 L-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 L + L +S GR+ A+ TGR S QN+P + Sbjct: 668 LLSTYIDALPNLISEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT----------- 715 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 S +R + G KL+ AD + IE R+LA +A E+ I AF Sbjct: 716 -------------EFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEILINAFHKN 762 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCGLDLQQ 461 +DI+ T F + ++ ++R +GK + + Y G K F + L + Sbjct: 763 DDIHSLTARLIFEK--EDINSDERRVGKTINFGVIYGMGIKKFARSTGVSTTEAKEFLIK 820 Query: 462 FSQNVKSTSTFEDWEQ---------------------------------------AESHH 482 + + F ++++ + Sbjct: 821 YKERYAKIFKFLEFQERLALSKGYVETIFGRKREFKFDKNGLGRLIGKDPYEIDLQTARK 880 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQE 534 M+ Q A + G++ +++K A ++ + +++ + + VQ Sbjct: 881 AGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLEMNIPVKMLLQVHDELLFEVQP 938 >gi|326942370|gb|AEA18266.1| DNA polymerase I [Bacillus thuringiensis serovar chinensis CT-43] Length = 877 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 76/496 (15%), Positives = 166/496 (33%), Gaps = 82/496 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L + + ++ + K GID+ + ++A L A Sbjct: 356 DAFKAWLANGEMRKHTFDAKRAIVALK-WNGIDMQGIDF--DLLIAAYL-----LDPADT 407 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 408 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 459 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E + K+++++I Sbjct: 460 QTFVEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELVGRLKEMEQEI 519 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI---LNR 281 KL + L + LF + ++ ++ + + ++I L+ Sbjct: 520 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTGYSTSADVLDKLMDRHEIIPNILHY 578 Query: 282 LASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + L + V D ++ ++TGR S QN+P + Sbjct: 579 RQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR------- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + AD + IE RVLA IA + + Sbjct: 631 -----------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKGLV 673 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 674 EAFQHDMDIHTKTAMDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAA 733 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++++ ++ + + + S + ++ A+ Sbjct: 734 AEFIEKYLESFPGVQEYMEDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERTAM 793 Query: 495 KDKLIGTACELVKKAW 510 + GTA +++KKA Sbjct: 794 NTPIQGTAADIIKKAM 809 Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 30/184 (16%), Positives = 62/184 (33%), Gaps = 18/184 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + G + V R + + G++ D + ++ + + V Sbjct: 688 MDVFGVEKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAAEFIEKYLESFPGV 747 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + + Y+ TS+ R++ + N +Q + DI Sbjct: 748 QEYMEDIVKDAKQKGYVATLLNRR---RYIPEITSRNFNLRSFAERTAMNTPIQGTAADI 804 Query: 610 LCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLP 662 + + M + G ++L VHDE++ E P + L +M A +P Sbjct: 805 IKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEIEKLEQLVPEVMEHAIELA--VP 862 Query: 663 LKAE 666 LK + Sbjct: 863 LKVD 866 >gi|315171781|gb|EFU15798.1| DNA-directed DNA polymerase [Enterococcus faecalis TX1342] Length = 882 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 151/490 (30%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 360 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 414 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 415 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 473 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 474 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 532 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 533 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 592 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 593 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 634 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 635 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 686 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ---GGAKV-FKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G + + Sbjct: 687 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSPKLGITRKQAQQYIDTYF 746 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 747 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 806 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 807 ADILKIAMIE 816 >gi|116617825|ref|YP_818196.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096672|gb|ABJ61823.1| DNA polymerase I [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 893 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 79/524 (15%), Positives = 175/524 (33%), Gaps = 72/524 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + +A + V + + S + +L + +E ++ N + +LFK+ + + Sbjct: 347 MIGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKR---LGLAL 403 Query: 91 KRWICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPP--YD 146 K +L + N L F +L E+ A+F + + + Sbjct: 404 KGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFTVPTDTNLLLSHV 463 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +A+ LF ++ + ++ +D E L + + +G +++ + + Sbjct: 464 AHKADG-----LFK--LEKPAFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYL 516 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + +++ + I + G + L + LF G+ ++ ++ T Sbjct: 517 RNKGKDLSERIADIQSAIY-IEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVD 575 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322 +L D IL + ++ L + D ++ ++TGR S Sbjct: 576 VLEKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRF-LQTLTQTGRLSS 634 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P + +R+ + S ++ AD Sbjct: 635 VDPNLQNIPMRS------------------------EEGRLIRTAFVPSHPNWQIFGADY 670 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALG 440 + IE RVLA + G+ KAF NGEDI+ T F D V +R K + + Sbjct: 671 SQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIV 730 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G A + + + Q + + Sbjct: 731 YGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRRRYL 790 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ + ++ A+ + G+A +++K A ++ + + Sbjct: 791 PDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALRE 834 Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M + ++L VHDE++ ETP + + ++M Sbjct: 813 IQGSAADIIKIAMIKVNEALRENNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSA 872 Query: 655 PSWAKGLPLKAEGYEAKRY 673 A +PLK + + + Sbjct: 873 V--ALDVPLKVDAHHGDTW 889 >gi|313893738|ref|ZP_07827305.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] gi|313441752|gb|EFR60177.1| DNA-directed DNA polymerase [Veillonella sp. oral taxon 158 str. F0412] Length = 873 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 74/419 (17%), Positives = 135/419 (32%), Gaps = 64/419 (15%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 L RF SI S D + V+A E A RE L E L Sbjct: 425 YLTERFSVPSIASGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 480 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + G ID + + + +E ++ ++I + + L + LF Sbjct: 481 TLVVMEKNGIYIDTEKLAETTARFKEELAQVQQEIYDIAGETF-NINSPKQLGVILFEKM 539 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303 + ++ ++ + L + + + ++ KL L+ + Sbjct: 540 NLPIIKKTK--TGYSTDAEVLDMLRHESPIVEKILAYRSVAKLVSTYCEGLAVLINDKTK 597 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T + TGR S QN+P + Sbjct: 598 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 632 Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ G LV AD + IE R+LA ++G++ IKAF G+DI+ T A+ + Sbjct: 633 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVEGKDIHRFTAAEVLGKSQE 692 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ E+R+ K + + Y G ++ + + + D Sbjct: 693 DVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 752 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 E+H + + A+ + GTA +++K A Q Sbjct: 753 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 811 >gi|299783433|gb|ADJ41431.1| DNA-directed DNA polymerase [Lactobacillus fermentum CECT 5716] Length = 886 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 83/524 (15%), Positives = 165/524 (31%), Gaps = 77/524 (14%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 Y E L + D L R + L + L D V N+ + + + Sbjct: 334 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 389 Query: 84 LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 LG+D+ +LA + L A ++ + EE + KG+ Sbjct: 390 LGVDL--AGVNFDLLLASYLLNTSENANDLGVLAAAHDY-HQVQTDEEV------YGKGA 440 Query: 140 IDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + P D H+ K + ++L D ER L + + G Sbjct: 441 KRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITG 500 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D + ++ + + +L++ I + + L + LF + ++ ++ Sbjct: 501 IHVDAATLKEMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTK 559 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + + +LA + + + I KL + L + + D + T Sbjct: 560 TGYSTAVD--VLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQT 617 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372 + TGR S QN+P +R S Sbjct: 618 LTATGRLSSVDPNLQNIP------------------------VRLEEGRQIRRAFTPSAP 653 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAI 431 G K+ +D + +E RVLA + G+ F G+DI+ T + F+ D+V+ R Sbjct: 654 GWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQ 713 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF--------------- 472 K + + Y G A+ +Q + + + Sbjct: 714 AKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVE 773 Query: 473 ------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + A+ + G+A +++K A Sbjct: 774 TLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAM 817 >gi|325281339|ref|YP_004253881.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] gi|324313148|gb|ADY33701.1| DNA polymerase I [Odoribacter splanchnicus DSM 20712] Length = 896 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 77/513 (15%), Positives = 168/513 (32%), Gaps = 87/513 (16%) Query: 53 MPSDLLQYLRDETVMCVAHNSLFER-------------ILFKKTLGIDIPSKRWICTSVL 99 +P+D + L + + ++FE I++ K GI + K I + Sbjct: 362 LPNDKNKALE----IILQFQAIFENKNKILISADVKNDIIWLKRAGIKL--KNDIFDIKI 415 Query: 100 ARTNGLPS-SLKNACLALNFSEHL--TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 A P S +AL + + +E + L +F + + + + + Sbjct: 416 AHYVLHPDISHDLGRVALEYLNYKLSGSKKEDQQLTLQFDEEAGTEDNDFAEKTD--VIF 473 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 QL + C D++ T L ++ E L + + G ID + + + + + Sbjct: 474 QLHEKLCD-DLQQT----GLLALYNNIEMPLVFVLADMEYEGVSIDCNELQSISSELKER 528 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 ++++I +L + L LF ID + + S + +L + Sbjct: 529 IDIIEKEIYELAHQEF-NISSPKQLGEVLFDKLKIDSNHKKTKSGQYSTSEQVLVKLEDE 587 Query: 277 LILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + + KL L + G++ A+ TGR S QN+ Sbjct: 588 HPIINKILDYRGLKKLLTTYAEALPSFIDPGTGKIHTHFNQAEAA-TGRLSSLNPNLQNI 646 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVL 389 P + +R + ++ AD + +E R++ Sbjct: 647 PIRT------------------------EEGRKIRKAFVTGNDDYLFFSADYSQVELRLM 682 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++ + I AF +G D++ T +K ++ +++V+ E R K + Y G A Sbjct: 683 AHLSQDKELIHAFNHGIDVHTATASKIYHVTLEEVTPEMRRRAKTANFGIIYGISAWGLA 742 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLW 484 + + + + + S + Sbjct: 743 ERLHISRKEGKELIDGYFDLYPGVKKYMEESVEKARKKEFVETIMGRRRYLRDINSRNAV 802 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 ++ A+ + G+A +++K A + + Sbjct: 803 VRGMAERNAINAPIQGSAADIIKMAMICIQKRI 835 >gi|227432296|ref|ZP_03914290.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351963|gb|EEJ42195.1| DNA polymerase I [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 893 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 79/524 (15%), Positives = 174/524 (33%), Gaps = 72/524 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAM-PSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 + +A + V + + S + +L + +E ++ N + +LFK+ + + Sbjct: 347 MIGFAIGNPEVGYYASRDISLLQTEELKSVIENEQILKNVFNVKAQLVLFKR---LGLAL 403 Query: 91 KRWICTSVLARTNGLPSSLKNACLAL--NFSEHLTKMEEGKALIARFCKGSIDSPP--YD 146 K +L + N L F +L E+ A+F + + + Sbjct: 404 KGVNFDFILVAYLLDTVANDNVLSTLAQRFDVYLAPDEDIYGKGAKFAVPTDTNLLLSHI 463 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 +A+ LF ++ + ++ +D E L + + +G +++ + + Sbjct: 464 AHKADG-----LFK--LEKPAFTELKQHEQTHLYTDIELPLAFVLADMEYQGIKVNPEYL 516 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKS 263 + + + + I + G + L + LF G+ ++ ++ T Sbjct: 517 RNKGKDLYERIADIQSAIY-IEAGEEFNLNSPKQLGVLLFEKMGLPVIKKTKTGYSTAVD 575 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322 +L D IL + ++ L + D ++ ++TGR S Sbjct: 576 VLEKLAPQAPIVDHILQYRQLAKLKSTYIDGLLSVIYPKDSKIHTRF-LQTLTQTGRLSS 634 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P + +R+ + S ++ AD Sbjct: 635 VDPNLQNIPMRS------------------------EEGRLIRTAFVPSHPNWQIFGADY 670 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALG 440 + IE RVLA + G+ KAF NGEDI+ T F D V +R K + + Sbjct: 671 SQIELRVLAHVTGDKNMQKAFLNGEDIHAETARAVFGLADDAVVDPLKRRTAKAVNFGIV 730 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G A + + + Q + + Sbjct: 731 YGISDYGLANNLGISRAEAKRFIDTYFQEFPQIHEWMNTIKTFAHEHGYVETIAHRRRYL 790 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ + ++ A+ + G+A +++K A ++ + + Sbjct: 791 PDIQAKNFNLRSFAERTAMNSPIQGSAADIIKIAMIKVNEALRK 834 Score = 42.8 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 9/79 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M + ++L VHDE++ ETP + + ++M Sbjct: 813 IQGSAADIIKIAMIKVNEALRKNNLQARMLLQVHDELIFETPVDEIDELTEVVTNVMDSA 872 Query: 655 PSWAKGLPLKAEGYEAKRY 673 A +PLK + + + Sbjct: 873 V--ALDVPLKVDAHHGDTW 889 >gi|284047822|ref|YP_003398161.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] gi|283952043|gb|ADB46846.1| DNA polymerase I [Acidaminococcus fermentans DSM 20731] Length = 872 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 81/520 (15%), Positives = 164/520 (31%), Gaps = 97/520 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L L+D + A + L+K +G + LA P + Sbjct: 376 EAVLSLLQDPAISKAAADPK---ELYKYMMGQGKNLQGITDDPALAGYLYEPGASGYGIQ 432 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL EG Q + +E R L Sbjct: 433 ALGEEFLPAASGEG------------------------AQDTAALVPVLREKLE-ERGLT 467 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + D E L + G +D ++ ++ + ++ + L++ + Sbjct: 468 RL---YEDIELPLTENLAEMEFTGIAVDQAMLDEVTGEMTKKVQALEQQAWDQAGEQF-N 523 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L + LF G+ ++ ++ T S+L + +++ S Sbjct: 524 LNSPKQLGVLLFEKLGLPIIKKTKTGYSTDVSVLEALQGEHPLIETLISYRQLSKLLSTY 583 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L L ++ GR+ A+ TGR S QN+P + Sbjct: 584 LLGLHPLINPATGRIHTHFN-QMATVTGRLSSTEPNLQNIPTRT---------------- 626 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + G L+ D + +E RV+A IA ++ + +F +G+D++ Sbjct: 627 --------EVGKRMREMFVPGEGYDLLMSCDYSQVELRVMASIAQDELLLDSFRHGQDVH 678 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 T ++ F P+D+V+ R+ K + + Y G A+ ++ + Sbjct: 679 ARTASEIFGVPLDQVTPYMRSKAKTVNFGIIYGISDFGLARQLGVPRGEAAQYIESYFAR 738 Query: 466 VKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACE 504 + + E+ ++ + + A+ + GTA + Sbjct: 739 YTGVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSFAERTAINTPIQGTAAD 798 Query: 505 LVKKAW----------RAKHQGVLQLWKDLTEGFACVVQE 534 ++K A R K + +LQ+ +L QE Sbjct: 799 IIKVAMLKVARNLKEARVKSRVLLQVHDELVLEIPAAEQE 838 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 36/183 (19%), Positives = 65/183 (35%), Gaps = 18/183 (9%) Query: 497 KLIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 ++ G + V R+K + G++ D V G + + Sbjct: 684 EIFGVPLDQVTPYMRSKAKTVNFGIIYGISDFGLARQLGVPRGEAA---QYIESYFARYT 740 Query: 553 RHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 K + +R + Y + G YL ++ R++ + N +Q + DI+ Sbjct: 741 GVKAYMEREKQKAREMGYVETLFGRRRYLPDINAKNFNRRSFAERTAINTPIQGTAADII 800 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPL 663 M +N ++L VHDE+V E P +VG + M A +PL Sbjct: 801 KVAMLKVARNLKEARVKSRVLLQVHDELVLEIPAAEQETVGKIVKETMEHAVDLA--VPL 858 Query: 664 KAE 666 A+ Sbjct: 859 VAD 861 >gi|153765|gb|AAA26954.1| DNA polymerase I [Streptococcus pneumoniae] Length = 877 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 72/458 (15%), Positives = 149/458 (32%), Gaps = 72/458 (15%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 VE L ++L L D E+ L + + G + + +L++Q +KL Sbjct: 454 VETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIVVKKETLLEMQAENELVIEKL 513 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++I +L + L + LF G+ L + + + +LA + Sbjct: 514 TQEIYELAGEEF-NVNSPKQLGVLLFEKLGLPLEYTKKTKTGYSTAVDVLERLAPIAPIV 572 Query: 281 RLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + I K+ + L + + +DG++ ++TGR S QN+P + Sbjct: 573 KKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPAR-- 629 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAG 394 +R + L+ +D + IE RVLA I+ Sbjct: 630 ----------------------LEQGRLIRKAFVPEWEDSVLLSSDYSQIELRVLAHISK 667 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFK 449 ++ IKAF G DI+ +T + F D V+ R K + + Y G + Sbjct: 668 DEHLIKAFQEGADIHTSTAMRVFGIERPDNVTANDRRNAKAVNFGVVYGISDFGLSNNLG 727 Query: 450 TMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQ 488 + + + + D S + ++ Sbjct: 728 ISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRELPDINSRNFNIRGF 787 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 A+ + G+A +++K A + ++ + + V VP+ Sbjct: 788 AEATAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKMLLQVHDEIVLEVPK 839 Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + K+ V + + +L + + ++ Sbjct: 840 SELVEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|330718752|ref|ZP_08313352.1| DNA polymerase I [Leuconostoc fallax KCTC 3537] Length = 896 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 79/495 (15%), Positives = 166/495 (33%), Gaps = 71/495 (14%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG--LPSSLKNAC 113 ++ + TV +N +R+LFK+ +DI + +LA ++ + A Sbjct: 375 EIKAIIESPTVEKRVYNVKAQRVLFKR---LDIELRNATFDFLLAAYLLDTTDNNAELAT 431 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDS--PPYDCTRANHVQAWQLFGEYCKRDVEATR 171 LA + +L E+ A+F + + + +A+ + V Sbjct: 432 LAQKYDIYLQLDEDIYGKGAKFSVPTDEGRVLMHIAHKADTL-------NQLIEPVMVQL 484 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + ++L D E L + + G R+D + + ++ E + + +++ I + Sbjct: 485 KEHEQLALYQDIELPLASVLADMEYTGIRVDQNQLQEMGESLDAQIVDVEKAIYEEAGEE 544 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L + LF G+ ++ ++ T +L IL + Sbjct: 545 F-NINSPKQLGILLFEKMGLPVIKRTKTGYSTAVEVLEKLADQAPIVAYILQYRQLAKLK 603 Query: 289 ILKLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L V D ++ ++TGR S QN+P + + Sbjct: 604 STYIDGLLAVVYRQDSKIHTRY-LQTLTQTGRLSSVDPNLQNIPMRTEA----------- 651 Query: 348 NRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + S ++ AD + IE RVLA + G+ +AF N E Sbjct: 652 -------------GRQIRKAFVPSEPNWQIFGADYSQIELRVLAHMTGDKNLQRAFLNDE 698 Query: 407 DIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T F D ++ QR K + + Y G + + + Sbjct: 699 DIHSETARAVFGLNDDAPITSLQRRAAKAVNFGIVYGISDFGLSNNLGISRAEAKRFIDT 758 Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500 + + + + + +H + A+ + G Sbjct: 759 YFEKFPQVHEWMENAKTLAHEQGYVETLAKRRRYLPDIHAKNFNRRSFAERTAMNTPIQG 818 Query: 501 TACELVKKAWRAKHQ 515 +A +++K A +Q Sbjct: 819 SAADIIKIAMIKMNQ 833 >gi|260437044|ref|ZP_05790860.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] gi|292810353|gb|EFF69558.1| DNA polymerase I [Butyrivibrio crossotus DSM 2876] Length = 873 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 82/454 (18%), Positives = 159/454 (35%), Gaps = 80/454 (17%) Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 S+ + K + L F K ++A+ F + EA Sbjct: 416 MGITVEGRSDIIGKNKVSSYLTDGFDKIVKLFA---------LEAYVAFNSF----DEAM 462 Query: 171 RELFKRLIP--LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + L + + D E + + +++ G ++ D + + + ++ + K L++ I K Sbjct: 463 KRLRETDMEKVYHDIELPVIYVLKSMEKYGIAVNKDALKQYGDELSVKIKDLEQSIYKEA 522 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + ++ T +L + D IL + Sbjct: 523 GTEF-NINSPKQLGEVLFEKLNLPCGKKTKTGYSTSADVLEKLSADYPIVDSILEYRTLA 581 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L+E + DGR+ T + TGR S QN+P + Sbjct: 582 KLKSTYADGLAEYI-VDGRIHSTFN-QTITATGRISSTEPNLQNIPIR------------ 627 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R + +G + AD + IE R+LA ++G+D I+A+ Sbjct: 628 ------------MELGRKIRKVFVPEDGFIFMDADYSQIELRLLAHMSGDDTLIEAYNED 675 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T +K F TP+D+V+ QR+ K + + Y G ++ + + Sbjct: 676 RDIHKITASKVFKTPLDEVTPRQRSNAKAVNFGIVYGISSFGLSRDLSISKKEAKEYIDE 735 Query: 462 FSQNVKSTSTFEDWEQAESHH--------------------LWMQDQY-PEFAVKDKLIG 500 + K+ + D + +MQ Q+ A+ L G Sbjct: 736 YFNTYKTLKNYLDNLVKSAKENGYTKTIYGRRRPVPELSSGNFMQRQFGERIAMNSPLQG 795 Query: 501 TACELVKKAW----------RAKHQGVLQLWKDL 524 TA +++K A R + + +LQ+ +L Sbjct: 796 TAADIIKIAMINVYKRLKNERLESRLILQIHDEL 829 >gi|25028011|ref|NP_738065.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|23493294|dbj|BAC18265.1| putative DNA polymerase I [Corynebacterium efficiens YS-314] Length = 945 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 67/421 (15%), Positives = 135/421 (32%), Gaps = 61/421 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G +D+ + + E + + +E +L + L Sbjct: 543 DLEIPLLSILARMEATGIAVDVATLEEQLETFIDQVTREEEAARELAGDPTLNLSSPKQL 602 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSE 297 + LF G+ ++ + + + K L L Sbjct: 603 QTVLFETFGMPKTKKTKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLIR 662 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 +V SDGR+ T + TGR S QN+P + + Sbjct: 663 SVGSDGRIHTTFN-QTVASTGRLSSTDPNLQNIPVRTEA--------------------- 700 Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +RS + G L+ AD + IE RV+A ++ + I+A+ GED++ +K Sbjct: 701 ---GRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKV 757 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ PID V+ E R K M L Y G ++ A ++ + + + Sbjct: 758 FDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIMESYFERFGGVQRY 817 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 ++ + ++ A+ + GTA +++K A Sbjct: 818 LAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQGTAADIIKVAMI 877 Query: 512 AKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + ++ + + + G + + + + + S Sbjct: 878 RVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNAITLRVPLEVSAGSG 937 Query: 566 R 566 R Sbjct: 938 R 938 >gi|15894383|ref|NP_347732.1| DNA polymerase I [Clostridium acetobutylicum ATCC 824] gi|15024015|gb|AAK79072.1|AE007626_6 DNA polymerase I, polA [Clostridium acetobutylicum ATCC 824] gi|325508511|gb|ADZ20147.1| DNA polymerase I [Clostridium acetobutylicum EA 2018] Length = 871 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 69/506 (13%), Positives = 167/506 (33%), Gaps = 88/506 (17%) Query: 49 EQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS- 107 + + DL ++ ++ + + H+S + + I + + +A PS Sbjct: 362 NREDVLKDLKEFFENKKIAKIIHDSKNMYTVL---MKNGIKIENLAFDTAIAEYLINPSK 418 Query: 108 ---SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 +LK+A + + + + K + Sbjct: 419 KEYNLKDAAEEMLLLDLTGEDNDIKIKEVYVMDKIYNKL--------------------- 457 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +D ++ + + E L + ++ G++++ + + ++ + E K+ ++I Sbjct: 458 KDKIKEYDMDELYYKV---ELPLIEVLSSMESEGFKVEKNKLQQIGDKFTVEIAKVKDEI 514 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + + L LF + ++ ++ T +L + ++ Sbjct: 515 YNMAGEEF-NISSPKQLGKILFEKLDLPVIKKTKTGYSTNAEVLEKLMDKHPIIEKVVYY 573 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEIL 340 + + L + D ++ + + TGR S QN+P + E E Sbjct: 574 RQLTKLYSTYVEGLKPVIDVDEKIHSSFN-QTVTTTGRLSSTEPNLQNIPIKNEMGRE-- 630 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + + ++ AD + IE RVLA IA ++ I Sbjct: 631 -----------------------IRKVFVPENDNCIILSADYSQIELRVLAHIADDENLI 667 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AF + DI+ T ++ F PI++V+ R+ K + + Y A+ K Sbjct: 668 NAFKHHSDIHTKTASEVFRVPIEEVTSRMRSNAKAVNFGIVYGISDFSLAQDIKVSKKEA 727 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + + + + + S + ++ A+ Sbjct: 728 KEYIDTYFERYPNVKKYLEDIVVTAKKNMYVNTIMNRRRIIPEIASSNKIVKGFGERLAM 787 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQL 520 + G+A +L+K + + + QL Sbjct: 788 NTPIQGSAADLIKLSMVNVYSKIKQL 813 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 71/195 (36%), Gaps = 16/195 (8%) Query: 466 VKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLT 525 + + E+ A HH + + + + + A +A + G++ D + Sbjct: 657 LAHIADDENLINAFKHHSDIHTKTASEVFRVPIEEVTSRMRSNA-KAVNFGIVYGISDFS 715 Query: 526 EGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV---KGDCSYLNT 582 V + A+ + K+ + ++ ++++ +Y + + Sbjct: 716 LAQDIKVSKK---EAKEYIDTYFERYPNVKKYLEDIVVTAKKNMYVNTIMNRRRIIPEIA 772 Query: 583 ATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE 635 +++++++ +G +L N +Q + D++ M N ++L VHDE++ Sbjct: 773 SSNKIVK--GFGERLAMNTPIQGSAADLIKLSMVNVYSKIKQLKLKSRLILQVHDELILN 830 Query: 636 TPDTPYFSVGTLCSL 650 V L L Sbjct: 831 VHKDELEKVKELVKL 845 >gi|227515613|ref|ZP_03945662.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227086043|gb|EEI21355.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 916 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 83/524 (15%), Positives = 165/524 (31%), Gaps = 77/524 (14%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 Y E L + D L R + L + L D V N+ + + + Sbjct: 364 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 419 Query: 84 LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 LG+D+ +LA + L A ++ + EE + KG+ Sbjct: 420 LGVDL--AGVNFDLLLASYLLNTSENANDLGVLAAAHDY-HQVQTDEEV------YGKGA 470 Query: 140 IDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + P D H+ K + ++L D ER L + + G Sbjct: 471 KRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITG 530 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D + ++ + + +L++ I + + L + LF + ++ ++ Sbjct: 531 IHVDAATLKEMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTK 589 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + + +LA + + + I KL + L + + D + T Sbjct: 590 TGYSTAVD--VLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQT 647 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372 + TGR S QN+P +R S Sbjct: 648 LTATGRLSSVDPNLQNIP------------------------VRLEEGRQIRRAFTPSAP 683 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAI 431 G K+ +D + +E RVLA + G+ F G+DI+ T + F+ D+V+ R Sbjct: 684 GWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQ 743 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF--------------- 472 K + + Y G A+ +Q + + + Sbjct: 744 AKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVE 803 Query: 473 ------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + A+ + G+A +++K A Sbjct: 804 TLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAM 847 >gi|238650585|ref|YP_002916437.1| DNA polymerase I [Rickettsia peacockii str. Rustic] gi|238624683|gb|ACR47389.1| DNA polymerase I [Rickettsia peacockii str. Rustic] Length = 875 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 86/494 (17%), Positives = 164/494 (33%), Gaps = 89/494 (18%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L D+++ + ++ L K DI + + A + GL Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQ------- 426 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATREL 173 N + + K + +I K I+ Y T W+L T L Sbjct: 427 -KNLFKEVLKETWIENIIIESAKIVINFITLYKQT------IWELKDN-------KTFRL 472 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + S+ + + + + G +D + + +L E KL+E+I L+ Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287 + L LF + S + +L++ DL+L + Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 ++L + + + R+ ++ TGR S QN+P + Sbjct: 586 KNTYTDSLPKQIDNITHRVHTKF-LQTSTTTGRLSSQEPNLQNVPIRS------------ 632 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 + +R IA G KL+ AD + IE R+L+ IA D +AF N + Sbjct: 633 ------------SEGNQIRQAFIAKEGYKLISADYSQIELRILSHIANIDALKQAFINKD 680 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T + FN +++ E R K + + Y G AK ++++ Sbjct: 681 DIHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKY 740 Query: 463 SQNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTAC 503 K + + +A + H ++ A+ + GT Sbjct: 741 FAEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNA 800 Query: 504 ELVKKAWRAKHQGV 517 +++K A Q + Sbjct: 801 DIIKIAMINLDQEI 814 >gi|256850824|ref|ZP_05556213.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260661035|ref|ZP_05861949.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|282934507|ref|ZP_06339762.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297205697|ref|ZP_06923092.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] gi|256615886|gb|EEU21074.1| DNA polymerase I [Lactobacillus jensenii 27-2-CHN] gi|260547972|gb|EEX23948.1| DNA polymerase I [Lactobacillus jensenii 115-3-CHN] gi|281301454|gb|EFA93743.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|297148823|gb|EFH29121.1| DNA-directed DNA polymerase I [Lactobacillus jensenii JV-V16] Length = 885 Score = 224 bits (570), Expect = 4e-56, Method: Composition-based stats. Identities = 84/504 (16%), Positives = 163/504 (32%), Gaps = 76/504 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110 LL L D+ + + + + LGI + + +LA + L Sbjct: 364 QPLLSLLEDQAIAKNVFDLKRTMVGLYR-LGIKSHNMNY--DMLLASYLVNNENNSNDLG 420 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 C N+ + I + KG + P + NH+ L E K + Sbjct: 421 EICQLYNYYDLQPD-------IDIYGKGKKAAIPEETVFFNHLAGKVLAIEVLKPTLLKK 473 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ E + + + G + D +++L AQ +L+ DI L G Sbjct: 474 LTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFAQRLTELEADIY-LEAG 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF G+ + ++ + + + QL + + + I Sbjct: 533 ERFNINSPKQLGQILFEKLGLPPIKKTKTGYSTSVE--VLEQLKEQSPIVQKVLDYRQIA 590 Query: 291 KLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 K+ + L + + DGR+ Q + TGR S QN+P Sbjct: 591 KIQSTYVKGLLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIP-------------- 635 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + S +G D + +E RVLA ++G++ +AF Sbjct: 636 ----------VRLEEGKKIRKAFVPSNSDGYIF-SCDYSQVELRVLAHVSGDENMQEAFK 684 Query: 404 NGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 G DI+ T K F+ ++V+ R K + + Y G +K Sbjct: 685 TGYDIHAHTAMKIFHLDSPNEVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEF 744 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 + + + + D E + + ++ A+ Sbjct: 745 IDNYFEQYPKIKDYMDKEINFARENGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSP 804 Query: 498 LIGTACELVKKAWRAKHQGVLQLW 521 + G A +++K A + + +L Sbjct: 805 IQGGAADIIKIAMINMQKKLDELH 828 >gi|62184772|ref|YP_219557.1| DNA polymerase I [Chlamydophila abortus S26/3] gi|62147839|emb|CAH63585.1| putative DNA polymerase I [Chlamydophila abortus S26/3] Length = 869 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 85/509 (16%), Positives = 166/509 (32%), Gaps = 62/509 (12%) Query: 28 AVITLCAYAWD-DEPVKLWDR--TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTL 84 +TL A DE V D + + + L + + + +N + K Sbjct: 324 PSLTLMGVALACDEQVYYVDIEHAQDDVI-TPLRDFFKRKDTEFYGYNIKRDNHALKNAG 382 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 + + G S + + E K GK I P Sbjct: 383 IHIHNITLDLALAEHLINGGAKISYQTLLVDHGLVESAGKY--GKEWGQLSL--PILKSP 438 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 A + + K+ + ++ + E L + TI G +D++ Sbjct: 439 AKP--AEYFGEFVSHLPKIKKSLLEELKVKGLEDLFFNMEMPLEKVLFTIERNGMPLDVE 496 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI 264 + +L+ +++E L +DI + + + L L+ G+ +D + T + Sbjct: 497 DLQELERTLSEELAILTDDIYTVAGTSF-NIKSPKQLSDVLYNKLGLTPIDKARSTKAEV 555 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 L+ + IL A + L + R+ T G + TGR + Sbjct: 556 LAALLGEHEIVEKILAFRAIEKLLSTYVKALPRQIDPHTSRIHPTFNQMG-TVTGRLACQ 614 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLA 382 QN+P + +R + AD + Sbjct: 615 DPNLQNIPIRSER------------------------GRLLRKAFCDTRQNNYFLSADYS 650 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R LA ++ ++ AFA+ ED++ T ++ F+ P+++V+K+QR K + + Y Sbjct: 651 QIELRFLAHLSQDESLRLAFASREDVHTFTASQVFHVPLEEVTKQQRMQAKTVNFGIIYG 710 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES------------------ 480 G +K+ K S + + + + F + E+ Sbjct: 711 QQAYGLSKILKISVSEAQKLIDAYFDRYPAVARFINETINEACENLRVKTLLGRERIIDN 770 Query: 481 --HHLWMQDQYPEFAVKDKLIGTACELVK 507 + AV ++ G+A EL+K Sbjct: 771 WTEFSNSRAASGRLAVNTRIQGSAAELIK 799 >gi|308068368|ref|YP_003869973.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] gi|305857647|gb|ADM69435.1| DNA polymerase I (POL I) [Paenibacillus polymyxa E681] Length = 884 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 89/565 (15%), Positives = 174/565 (30%), Gaps = 89/565 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS----SL 109 + + +L D H+ R GI+ + LA P+ +L Sbjct: 363 TPIRAWLADPERKKRGHDLH--RTDLALHWHGIEFAGAEF--DVQLAGYLLDPTDANQTL 418 Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK--RDV 167 S + EE F KG+ P ++HV E + Sbjct: 419 SGLAAKYGLSS-IRPDEEV------FGKGAKYKVPDVDVLSDHVARKAAVIEALVPVQQA 471 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E + +L + E L + + +G ++++ + L + + L +I + Sbjct: 472 ELEKTEMHKLF--HELEMPLSRILADMEKQGVLVNVEELRALGKEFEAQIATLVSEIYSI 529 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ ++ ++ + +LA + + Sbjct: 530 AGVEF-NLNSPKQLGEILFDKLGLPVIKKTK--TGYSTDAEVLEKLAPYHDIVQNILQYR 586 Query: 288 AILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 I KL + L E G++ + A+ TGR S QN+P + Sbjct: 587 TIAKLQSTYVEGLLKEISGKTGKVHTYFRQTVAA-TGRLSSQFPNLQNIPIR-------- 637 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + S G ++ AD + IE RVLA I+ ++ + Sbjct: 638 ----------------LEEGRKIRKVFVPSEPGWSILAADYSQIELRVLADISDDERLKE 681 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF + DI+ T + F + V R K + + Y G ++ Sbjct: 682 AFVHDMDIHTKTASDVFGVAAEDVDSNMRRSAKAVNFGIVYGISDYGLSQNLNITRKEAA 741 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + Q+ + + D + + + ++ A+ Sbjct: 742 RFIDQYFDVFQGVRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNLRSFAERTAMN 801 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + GTA +++K A + + + + V VP M K Sbjct: 802 TPIQGTAADIIKLAMVQMDK--------VLRERNLRSRMLLQVHDELVFEVPPEEMETMK 853 Query: 556 RDVHIVLPSSRRLVYSDVKGDCSYL 580 V + ++ L +K + SY Sbjct: 854 ELVPATMEAALELAVP-LKAEVSYG 877 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 19/190 (10%) Query: 498 LIGTACELVKKAWRAK----HQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + G A E V R + G++ +++ A R + V + Sbjct: 697 VFGVAAEDVDSNMRRSAKAVNFGIV---YGISDYGLSQNLNITRKEAARFIDQYFDVFQG 753 Query: 554 HKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKLTENI-VQAISRDILC 611 +R + ++ ++R Y + YL + R++ + N +Q + DI+ Sbjct: 754 VRRYMDDIVKDAKRDGYVKTLLERRRYLPEINASNFNLRSFAERTAMNTPIQGTAADIIK 813 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLK 664 M K ++L VHDE+V E P ++ L + M A +PLK Sbjct: 814 LAMVQMDKVLRERNLRSRMLLQVHDELVFEVPPEEMETMKELVPATMEAALELA--VPLK 871 Query: 665 AE-GYEAKRY 673 AE Y + Y Sbjct: 872 AEVSYGSNWY 881 >gi|327439256|dbj|BAK15621.1| DNA polymerase I [Solibacillus silvestris StLB046] Length = 876 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 89/513 (17%), Positives = 176/513 (34%), Gaps = 80/513 (15%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 A D+ + D DL +L+DET +S + + + LGI++ K Sbjct: 346 AIDN----VVDNA-------DLKAWLQDETKKKYIVDSKATQAMLHR-LGIEL--KGVEF 391 Query: 96 TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA--NHV 153 +LA PS + L ++ +A+ + K + + V Sbjct: 392 DLLLASYILKPSISGDDVATLAKEFGYQDVQSNEAIYGKGAKWVVPGADHVAEHVSRKAV 451 Query: 154 QAWQLFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 W+L ++ E + EL+K L E L + + G +++D + ++ + Sbjct: 452 AVWKLQPLLDQKLKENEQFELYKEL------ELPLAHILGKMESEGITVNIDTLRQMGDD 505 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSN 269 + + + ++ I +L + L + LF G+ ++ ++ T +L Sbjct: 506 LKAKLEVMEATIYELAGEKF-NINSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQ 564 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 IL + + L + V D ++ Q + TGR S Q Sbjct: 565 SEHDIVKYILEYRTLAKLQSTYIEGLIKEVHKEDSKVHTRFQ-QALTSTGRLSSTNPNLQ 623 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEAR 387 N+P + +R + S L AD + IE R Sbjct: 624 NIPIR------------------------LEEGRKIRKAFVPSKKDWILFAADYSQIELR 659 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ---- 442 VLA + G++ ++AF G DI+ T FN D+V+ R K + + Y Sbjct: 660 VLAHMCGDEALVEAFQQGMDIHTRTAMDVFNLENPDEVTSLMRRTAKAVNFGIVYGISDY 719 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------------- 481 G ++ + ++ + Q+ + D E+ Sbjct: 720 GLSQSLDITRKEAAIFIENYLQSFPGVKNYMDTSIEEAKKAGFVTTILNRRRYLPDITSS 779 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 + ++ A+ + G+A +++KKA + Sbjct: 780 NFNLRSFAERTAMNTPIQGSAADIIKKAMIDMN 812 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + G ++L VHDE++ E P + + +M Sbjct: 796 IQGSAADIIKKAMIDMNARLEQEGLQTKLLLQVHDELIFEAPKEEIEILERIVPEVMENA 855 Query: 655 P 655 Sbjct: 856 I 856 >gi|307710073|ref|ZP_07646517.1| DNA polymerase I [Streptococcus mitis SK564] gi|307619053|gb|EFN98185.1| DNA polymerase I [Streptococcus mitis SK564] Length = 877 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 74/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%) Query: 157 QLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + F E+ R VE L ++L L D E+ L + + G + + + Sbjct: 440 EKFLEHLARKLAILVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVKKETL 499 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L++Q +KL ++I +L + L + LF G+ L + + Sbjct: 500 LEMQAENDLVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLGLPLEYTKKTKTGYSTA 558 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +LA + + I K+ + L + + +DG++ ++TGR S Sbjct: 559 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 617 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 618 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEWEDSVLLSSD 653 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + + Sbjct: 654 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERSEDVTANDRRNAKAVNFGV 713 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474 Y G + + + + + D Sbjct: 714 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 773 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 S + ++ A+ + G+A +++K A + ++ + Sbjct: 774 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 825 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + V VP+ + K+ V + + +L + + ++ Sbjct: 826 LLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|238019447|ref|ZP_04599873.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] gi|237864146|gb|EEP65436.1| hypothetical protein VEIDISOL_01316 [Veillonella dispar ATCC 17748] Length = 873 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 75/419 (17%), Positives = 135/419 (32%), Gaps = 64/419 (15%) Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 L RF SI S D + V+A E A RE L E L Sbjct: 425 YLTERFSVPSIASGSVDVECVSMVKALLAMNEVACE--SARREELWSLYE--TIELPLIH 480 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + G ID + + + E ++ ++I L + L + LF Sbjct: 481 TLVVMEKNGIYIDTNKLAETTARFKDELAQVQQEIYDLAGETF-NINSPKQLGVILFEKM 539 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDG 303 + ++ ++ + L + + + ++ KL L+ + Sbjct: 540 NLPVIKKTK--TGYSTDAEVLDMLRNESPIVEKILAYRSVAKLVSTYLEGLAVLINDKTK 597 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T + TGR S QN+P + Sbjct: 598 RIHTTFN-QMVTATGRLSSSDPNLQNIPVRTEK------------------------GRE 632 Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R+ G LV AD + IE R+LA ++G++ IKAF +G+DI+ T A+ + Sbjct: 633 IRALFYPGAGYDTLVSADYSQIELRILAHLSGDEALIKAFVDGKDIHRFTAAEVLGKAQE 692 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ E+R+ K + + Y G ++ + + + D Sbjct: 693 DVTSEERSHAKAINFGIIYGISDFGLSRDLGITRGEAKNYIDLYFSRYPKVKEYMDRMVQ 752 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 E+H + + A+ + GTA +++K A Q Sbjct: 753 EAHETGKVRTMFGRQRELPDINSRNFNRRSFAERTAMNTPIQGTAADIIKLAMNQVEQK 811 >gi|167771297|ref|ZP_02443350.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] gi|167666548|gb|EDS10678.1| hypothetical protein ANACOL_02655 [Anaerotruncus colihominis DSM 17241] Length = 874 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 73/380 (19%), Positives = 126/380 (33%), Gaps = 58/380 (15%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 ++ L + E L + + G+ +D + + + IV+ Sbjct: 464 EIREHEQEKLLYEIEMPLARVLAGMECEGFALDTQALRDYGGELDDRIDETHAAIVEYAG 523 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF+ G+ ++ + + L + + Sbjct: 524 YDF-NLNSPKQLGDVLFVKLGLPAKKKTKTG--YSTNVDVLEALRPQHPIIGEILEYRKL 580 Query: 290 LKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 KL + L + V DGR+R T Q +RTGR S QN+P + Sbjct: 581 SKLKSTYVDGLLKVVGPDGRVRSTFQ-QTETRTGRISSTEPNLQNIPIRT---------- 629 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R A G KLV AD + IE RVLA +A + I AF + Sbjct: 630 --------------EEGSRMRRFFTARPGWKLVDADYSQIELRVLADLADDQNMIAAFQS 675 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460 GEDI+ TT A+ F P V+ R+ K + + Y GA + S ++ Sbjct: 676 GEDIHATTAAQVFGMPGGTVTPLMRSRAKAVNFGIVYGIGAFSLSQDIGVTVSEADSYIK 735 Query: 461 QFSQNVKSTSTFEDWEQAESHH-------LWMQDQYPEFAV--------------KDKLI 499 + + + + A + + PE A + Sbjct: 736 SYLAHYAGVRKYMEDTIAFARENGYVKTLFGRRRYLPELAASNKVTQAFGERVARNTPIQ 795 Query: 500 GTACELVKKAWRAKHQGVLQ 519 GTA +++K A + + + Sbjct: 796 GTAADIIKIAMVRVFERLRR 815 Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 11/111 (9%) Query: 565 SRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA----- 617 +R Y G YL + + +G ++ N +Q + DI+ M Sbjct: 755 ARENGYVKTLFGRRRYLPELAASNKVTQAFGERVARNTPIQGTAADIIKIAMVRVFERLR 814 Query: 618 -TKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666 ++L VHDE++ E PD + M A +PL+A+ Sbjct: 815 REGLRARLILQVHDELLVEAPDDEIDRARAILKEEMEHAI--ALKVPLEAD 863 >gi|229546723|ref|ZP_04435448.1| DNA polymerase I [Enterococcus faecalis TX1322] gi|229308072|gb|EEN74059.1| DNA polymerase I [Enterococcus faecalis TX1322] Length = 837 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 66/490 (13%), Positives = 153/490 (31%), Gaps = 65/490 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + +L DET +++ + + +G +LA + N Sbjct: 315 QPFIDWLMDETRKKNVYDAKRTYVALNRYVGKMT---GIAFDVLLAAYLLDTN--DNNAD 369 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 ++H KG+ P D H+ ++ +++ Sbjct: 370 IEGVAQHYGYDAIQSDEAIY-GKGAKKGLPEDEEVFFGHLARKIKAIQFLTSKLDSELTE 428 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G R+D + ++Q ++ K+++E I Sbjct: 429 KNQADLFYKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIYAEAGEEF- 487 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ ++ + + + D++ R + + Sbjct: 488 NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYRQIAKIQST 547 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + D ++ ++TGR S QN+P + Sbjct: 548 -YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR---------------- 589 Query: 350 GETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L+ +D + IE RVLA I+ ++ +AF G+DI Sbjct: 590 --------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKEAFVEGQDI 641 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + +T + F + V+ R K + + Y G ++ + + Sbjct: 642 HASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQYLGITRKQAQQYIDTYF 701 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + S + ++ A+ + G+A Sbjct: 702 EKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAINTPIQGSA 761 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 762 ADILKIAMIE 771 >gi|157826228|ref|YP_001493948.1| DNA polymerase I [Rickettsia akari str. Hartford] gi|157800186|gb|ABV75440.1| DNA polymerase I [Rickettsia akari str. Hartford] Length = 872 Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 68/369 (18%), Positives = 132/369 (35%), Gaps = 54/369 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 SD + + + + G ++D + + +L E L+E+I L+ + Sbjct: 470 YSDIDLPICFILDKMEKTGIKVDANYLNQLSAEFGAEISILEEEIFALSGTKF-NIGSPK 528 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293 L LF + + + + + +L++ DL+L + + Sbjct: 529 QLGKILFEKMQLPFGKAAAKAISYSTAAEILEKLSEHGYNIADLLLRWRQLTKFKNTYTD 588 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + + + R T ++ TGR S QN+P + R Sbjct: 589 SLPKQIDNITRRVHTTFLQTSTTTGRLSSQEPNLQNIPIRSR------------------ 630 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T Sbjct: 631 ------EGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDTLKQAFINKDDIHTQTA 684 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + FN +++ E R K + + Y G AK S ++++ K Sbjct: 685 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNSEASEYIKKYFAEYKGV 744 Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + +A + H ++ A+ + GT +++K A Sbjct: 745 QEYMEQTKAFASSNGYVINFFGRKCFIPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 804 Query: 511 RAKHQGVLQ 519 Q + + Sbjct: 805 INLDQEIAK 813 Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q + DI+ M N + +VL +HDE++ E P+ V + +M Sbjct: 792 IQGTNADIIKIAMINLDQEIAKNKLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIM 848 >gi|226356483|ref|YP_002786223.1| DNA polymerase I [Deinococcus deserti VCD115] Length = 926 Score = 223 bits (569), Expect = 5e-56, Method: Composition-based stats. Identities = 77/423 (18%), Positives = 131/423 (30%), Gaps = 70/423 (16%) Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E+ L + + RG R+D + + L A Sbjct: 503 AAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGAAAARL 562 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 L+ +I + S R L L+ G+ ++ T K + + + L + Sbjct: 563 AALETEIHQHVGREF-SVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPLRDEH 621 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + L + KL + L V+ GRL T A TGR S QN+P Sbjct: 622 PVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFA-QTAVATGRLSSLNPNLQNIP 680 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G L+ AD + IE R+LA Sbjct: 681 IRS------------------------EMGREIRKGFIADKGYCLISADYSQIELRLLAH 716 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV---- 447 IA + +AF G DI+ T A+ V+ QR K + + Y A Sbjct: 717 IADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNE 776 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486 ++ + + D + ++ Sbjct: 777 LGISYVEAAGFIETYFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVR 836 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARR 542 + A + GTA +++K A + + +L + + E + R Sbjct: 837 EAGERLAYNMPIQGTAADIIKHAMIRLDRELEALGGRLLLQVHDELLIEAPENRAEDVAR 896 Query: 543 VAN 545 + Sbjct: 897 LTR 899 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 7/121 (5%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGK 596 + A + + L R Y + G Y+ + R G + Sbjct: 782 VEAAGFIETYFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGER 841 Query: 597 LTENI-VQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650 L N+ +Q + DI+ M G ++L VHDE++ E P+ V L + Sbjct: 842 LAYNMPIQGTAADIIKHAMIRLDRELEALGGRLLLQVHDELLIEAPENRAEDVARLTREV 901 Query: 651 M 651 M Sbjct: 902 M 902 >gi|269127065|ref|YP_003300435.1| DNA polymerase I [Thermomonospora curvata DSM 43183] gi|268312023|gb|ACY98397.1| DNA polymerase I [Thermomonospora curvata DSM 43183] Length = 906 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 92/571 (16%), Positives = 180/571 (31%), Gaps = 82/571 (14%) Query: 36 AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 A EP +L A L ++L D H++ + + Sbjct: 371 AVYVEPAEL-----GEADERALAEWLADPHRPKAIHDAKGPMLALAA---RGMTLAGVTS 422 Query: 96 TSVLARTNGLPS--SLKNACLALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 + LA LP + L L + E E G L D R Sbjct: 423 DTALAAYLALPGQRTFDLGDLVLRYLHKELREHAEPGGQLT------IDGIADDDAAREL 476 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 V+A + D + R RL L + E L + + G +D+D ++L Sbjct: 477 AVRARAVLELAEALDRDLERRGAARL--LHEVELPLTGVLAAMERAGIAVDVDHFIQLSA 534 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNIT 271 + + K ++ + ++ LF G+ ++ + N Sbjct: 535 SLGGQAKDTEQQAHAAVGHEF-NLGSPKQVQQVLFEELGLPKTKRTKTGYTTDSEALNSL 593 Query: 272 QLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 + D + + KL ++L + DGR+ T A+ TGR S Sbjct: 594 RAKSDHPVLEHILRWREVAKLKSIVDSLIPMAAEDGRIHTTFNQMVAA-TGRLSSTDPNL 652 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEA 386 QN+P + +R + G + L+ AD + IE Sbjct: 653 QNIPIRT------------------------AEGRQIREGFVVGEGYECLLTADYSQIEL 688 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R++A ++G++ I+AF +G D + T ++ F P +++ E RA K M L Y Sbjct: 689 RIMAHLSGDEALIEAFTSGADFHTITASRVFGLPPEQIDGELRARIKAMNYGLAYGLSPF 748 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481 G A + ++++ Q + S Sbjct: 749 GLASQLGITPDEARVLMEEYFQQFGGVRDYLQGVVRRARQDGYTETILGRRRYLPDLTSD 808 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535 + ++ A+ + G+A +++K A + + ++ + + V G Sbjct: 809 NRQRREMAERMALNAPIQGSAADIIKVASLRVDRALRERGLASRMLLQVHDELVFEVAPG 868 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + + + + + + + R Sbjct: 869 ELEELKELVREQMTGAYELRAPLEVAMGTGR 899 >gi|315271287|gb|ACO46469.2| putative DNA-directed DNA polymerase (DNA polymerase I) [Deinococcus deserti VCD115] Length = 923 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 77/423 (18%), Positives = 131/423 (30%), Gaps = 70/423 (16%) Query: 167 VEATRELFKRLIPLSDG---------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 T L + L P D E+ L + + RG R+D + + L A Sbjct: 500 AAVTARLLRDLPPQLDEARTKLYAGMEKPLAAVLTRMEVRGVRLDSEYIRGLAGAAAARL 559 Query: 218 KKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL 277 L+ +I + S R L L+ G+ ++ T K + + + L + Sbjct: 560 AALETEIHQHVGREF-SVRSPSQLETVLYDELGLASGRKTKLTGKRSTAVAALEPLRDEH 618 Query: 278 ILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + L + KL + L V+ GRL T A TGR S QN+P Sbjct: 619 PVIPLVLEFRELDKLRGTYLDPLPSLVNPRTGRLHTTFA-QTAVATGRLSSLNPNLQNIP 677 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 + +R IA G L+ AD + IE R+LA Sbjct: 678 IRS------------------------EMGREIRKGFIADKGYCLISADYSQIELRLLAH 713 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV---- 447 IA + +AF G DI+ T A+ V+ QR K + + Y A Sbjct: 714 IADDPLMQQAFREGADIHRRTAAQVLGLEEQSVTSTQRRAAKTVNFGVLYGMSAHRLSNE 773 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQ 486 ++ + + D + ++ Sbjct: 774 LGISYVEAAGFIETYFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVR 833 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARR 542 + A + GTA +++K A + + +L + + E + R Sbjct: 834 EAGERLAYNMPIQGTAADIIKHAMIRLDRELEALGGRLLLQVHDELLIEAPENRAEDVAR 893 Query: 543 VAN 545 + Sbjct: 894 LTR 896 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 7/121 (5%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGK 596 + A + + L R Y + G Y+ + R G + Sbjct: 779 VEAAGFIETYFNTYPGIRGYIDRTLEFGRTQGYVETMYGRRRYVPELAATNRNVREAGER 838 Query: 597 LTENI-VQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650 L N+ +Q + DI+ M G ++L VHDE++ E P+ V L + Sbjct: 839 LAYNMPIQGTAADIIKHAMIRLDRELEALGGRLLLQVHDELLIEAPENRAEDVARLTREV 898 Query: 651 M 651 M Sbjct: 899 M 899 >gi|259506402|ref|ZP_05749304.1| DNA polymerase I [Corynebacterium efficiens YS-314] gi|259166009|gb|EEW50563.1| DNA polymerase I [Corynebacterium efficiens YS-314] Length = 904 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 67/421 (15%), Positives = 135/421 (32%), Gaps = 61/421 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G +D+ + + E + + +E +L + L Sbjct: 502 DLEIPLLSILARMEATGIAVDVATLEEQLETFIDQVTREEEAARELAGDPTLNLSSPKQL 561 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSE 297 + LF G+ ++ + + + K L L Sbjct: 562 QTVLFETFGMPKTKKTKTGYSTAAAEIEALAAKNPHPFLDHLLAHRQYQKMKTTLEGLIR 621 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 +V SDGR+ T + TGR S QN+P + + Sbjct: 622 SVGSDGRIHTTFN-QTVASTGRLSSTDPNLQNIPVRTEA--------------------- 659 Query: 358 GLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +RS + G L+ AD + IE RV+A ++ + I+A+ GED++ +K Sbjct: 660 ---GRKIRSGFVVGEGYETLLTADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYVGSKV 716 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F+ PID V+ E R K M L Y G ++ A ++ + + + Sbjct: 717 FDVPIDGVTPELRRRVKAMSYGLVYGLSAFGLSQQLGIPAGEAKTIMESYFERFGGVQRY 776 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 ++ + ++ A+ + GTA +++K A Sbjct: 777 LAEVVEQARKSGYTETLFGRRRYLPELNSDNRVARENAERAALNAPIQGTAADIIKVAMI 836 Query: 512 AKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + ++ + + + G + + + + + S Sbjct: 837 RVDRELRATGVKSRVLLQVHDELVVEIAPGELEQVQGILEREMDNAITLRVPLEVSAGSG 896 Query: 566 R 566 R Sbjct: 897 R 897 >gi|327399380|ref|YP_004340249.1| DNA polymerase I [Hippea maritima DSM 10411] gi|327182009|gb|AEA34190.1| DNA polymerase I [Hippea maritima DSM 10411] Length = 801 Score = 223 bits (569), Expect = 6e-56, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 141/396 (35%), Gaps = 65/396 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 LS E L + ++ RG +ID + + + +A + ++ I L + T Sbjct: 402 LSQVETPLSEVLVSMEKRGIKIDSEYLTSFENELANKLYATEKQIHALAGEEF-NINSTK 460 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 L+ LF GI + ++ ++ LA+ + +L + AI K+ Sbjct: 461 ELQRILFEKLGIKPIKKTK--TGYSTDSESLQMLAQKYEIAQLIITYRAISKVISTYIRP 518 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + + RL T + TGR S QNLP + Sbjct: 519 FLDKMDKSNRLHTTFN-QTLTSTGRLSSSNPNLQNLPAGD-------------------- 557 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R ++A G KL+ +D + IE RVLA ++ + I+ F N EDI+ T Sbjct: 558 ---DELHSGIRKSVVAPKGYKLICSDYSQIELRVLAQMSKDKTLIEIFKNNEDIHTQTAV 614 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 K F V R + K + + Y G +K ++++ + Sbjct: 615 KIFGVHPSMVDHHLRRMAKTINFGIIYGMGYVSLSKTLNISKDKARQFIEKYFERFAGVK 674 Query: 471 TF-EDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKA 509 ++ E+ + + + +++ + AV + GTA +++K A Sbjct: 675 SYIENTTEKATKNGFVETYFGRRRYFFNINSNNKRLAQFEKRAAVNATIQGTAADIIKIA 734 Query: 510 WRAKHQG--------VLQLWKDLTEGFACVVQEGGS 537 ++ VLQ+ +L + E + Sbjct: 735 MVKLYEKLKNLDAHIVLQVHDELLVEAKEDIAENVA 770 >gi|288919856|ref|ZP_06414180.1| DNA polymerase I [Frankia sp. EUN1f] gi|288348771|gb|EFC83024.1| DNA polymerase I [Frankia sp. EUN1f] Length = 891 Score = 223 bits (569), Expect = 7e-56, Method: Composition-based stats. Identities = 87/545 (15%), Positives = 159/545 (29%), Gaps = 75/545 (13%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D H+ + + + LA LP S A L L + Sbjct: 376 LADPDRAKAGHDLKGPMLALAEA---GFTLAGVTSDTALAAYLALPGQRSFDLADLTLRY 432 Query: 119 SEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K E + S D A+ ++A D + R RL Sbjct: 433 LHRELKSDTETNGQLTL-----DGSGEADEAEADAIRARAALELAAALDGDLERRSAARL 487 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L + E L + + G D + + +LQ+ + E + L + Sbjct: 488 --LREMELPLVHVLARMERAGIAADEEHLTELQKHYSAEVADVAAQAHGLVGRSF-NLGS 544 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----N 293 L+ LF + + + D L + + +L + Sbjct: 545 PKQLQQILFDELALPKTKKIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLKTVVD 604 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + GR+ T A+ TGR S QN+P + Sbjct: 605 SLIPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRT------------------- 644 Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + G L+ AD + IE R++A ++G+ I+AFA+GED++ Sbjct: 645 -----PQGRQIRRAFVVGPGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHTFV 699 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 A+AF+ P+ +V E R K M L Y G A + + Sbjct: 700 AAQAFDLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREHMDAYFARFGG 759 Query: 469 TSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVK 507 F ++ + A+ + G+A +++K Sbjct: 760 VRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIK 819 Query: 508 KAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + +L + + + G + + + + Sbjct: 820 IAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVEVEALVRAEMGAAYEMSVPLEVS 879 Query: 562 LPSSR 566 + S Sbjct: 880 VGSGL 884 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 8/122 (6%) Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYG 594 AR + + + V+ +RR Y++ + G YL TS + R Sbjct: 742 APDEAREHMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMA 801 Query: 595 GKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 ++ N +Q + DI+ M + ++L VHDE+V E V L Sbjct: 802 ERMALNAPIQGSAADIIKIAMLGVDRALRSRDLRSRLLLQVHDELVLEIAPGERVEVEAL 861 Query: 648 CS 649 Sbjct: 862 VR 863 >gi|260663490|ref|ZP_05864380.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] gi|260552031|gb|EEX25084.1| DNA-directed DNA polymerase I [Lactobacillus fermentum 28-3-CHN] Length = 886 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 83/524 (15%), Positives = 166/524 (31%), Gaps = 77/524 (14%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 Y E L + D L R + L + L D V N+ + + + Sbjct: 334 YHESP---LAGFVIGDGKWWLVSRNADLLTTAPLKKLLEDPAVEKDVFNAKAQLVGLHR- 389 Query: 84 LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 LG+D+ + +LA + L A ++ + EE + KG+ Sbjct: 390 LGVDLAGVDF--DLLLASYLLNTSENANDLGVLAAAHDY-HQVQTDEEV------YGKGA 440 Query: 140 IDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + P D H+ K + ++L D ER L + + G Sbjct: 441 KRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITG 500 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D + ++ + + +L++ I + + L + LF + ++ ++ Sbjct: 501 IHVDAATLKEMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTK 559 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + + +LA + + + I KL + L + + D + T Sbjct: 560 TGYSTAVD--VLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQT 617 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372 + TGR S QN+P +R S Sbjct: 618 LTATGRLSSVDPNLQNIP------------------------VRLEEGRQIRRAFTPSAP 653 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAI 431 G K+ +D + +E RVLA + G+ F G+DI+ T + F+ D+V+ R Sbjct: 654 GWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQ 713 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF--------------- 472 K + + Y G A+ +Q + + + Sbjct: 714 AKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVE 773 Query: 473 ------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + A+ + G+A +++K A Sbjct: 774 TLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAM 817 >gi|323490453|ref|ZP_08095660.1| DNA polymerase I [Planococcus donghaensis MPA1U2] gi|323395857|gb|EGA88696.1| DNA polymerase I [Planococcus donghaensis MPA1U2] Length = 878 Score = 223 bits (568), Expect = 7e-56, Method: Composition-based stats. Identities = 66/416 (15%), Positives = 143/416 (34%), Gaps = 55/416 (13%) Query: 133 ARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 + KG+ P D H+ + + A E ++ E L + Sbjct: 430 QIYGKGAKKKVPEDAILHEHIARKARTIWKVRPLIMAKLEDNEQFDLYDKLELPLATVLG 489 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++ D ++++ + +A + +K++ DI L + L + LF G+ Sbjct: 490 QMESLGVMVNRDQLVEMGKELAHKLEKIESDIHGLAGQEF-NINSPKQLGVILFEKLGLP 548 Query: 253 LVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 + ++ T +L IL + L + + DG++ Sbjct: 549 ALKKTKTGYSTAADVLEKLEGQHEIISHILMYRQLGKLLSTYIEGLLKEIHEDGKIHTRF 608 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 Q + TGR S QN+P +R + Sbjct: 609 Q-QALTTTGRLSSINPNLQNIP------------------------VRLEEGRKIRKAFV 643 Query: 370 ASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 S G +V AD + IE RVLA ++ ++ ++AF + DI+ TT + F+ ++V+ + Sbjct: 644 PSEPGWVMVAADYSQIELRVLADMSEDERLVQAFKDDRDIHTTTASDVFHVTEEEVTSDM 703 Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--- 481 R K + + Y G ++ ++++ + ++ A++ Sbjct: 704 RRAAKAVNFGIVYGISDYGLSQNLNIPRKEAAAFIERYFASFPGVKSYMTNIVADAKRDG 763 Query: 482 ------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ A+ + G+A +++KKA + + Sbjct: 764 FVTTLMNRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADIIKKAMIDMDAAIER 819 >gi|111224005|ref|YP_714799.1| DNA polymerase I [Frankia alni ACN14a] gi|111151537|emb|CAJ63255.1| DNA polymerase I [Frankia alni ACN14a] Length = 884 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 91/545 (16%), Positives = 163/545 (29%), Gaps = 75/545 (13%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACL-ALN 117 L D AH+ + + + + LA LP S A L A Sbjct: 369 LADAHQPKAAHDVKGPMLALA---ELGLTLAGVTSDTALAAYLALPGQRSFDLADLVARY 425 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 L G + G + D RA +L E D + R L Sbjct: 426 LHRDLAVEPAGNGQLTLDGSGEAEESHADAVRARA--CLELADEL---DADLERRSAAVL 480 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L D E L + + G D D + +LQ+ E + ++ + Sbjct: 481 --LRDMELPLVTVLAGMERAGIAADQDHLTELQKHYGGEVTAVAAQAHEIVGRTF-NLGS 537 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----N 293 L+ LF G+ + + + D L + + +L + Sbjct: 538 PKQLQQILFDDLGLPKTKKIKTGYTTDADALAWLAVQSDHPLLPVLLRHRDVARLKTVVD 597 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + GR+ T A+ TGR S QN+P + Sbjct: 598 SLLPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRT------------------- 637 Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + G L+ AD + IE R++A ++G++ I+AF +GED++ Sbjct: 638 -----AEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGDEGLIEAFGSGEDLHTFV 692 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 A+AF P+ +V E R K M L Y G A + + Sbjct: 693 AAEAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLASQLGIAPDEAREHMDAYFGRFGG 752 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 F S + + A+ + G+A +++K Sbjct: 753 VRDFLRGVVERARRDGYTETMLGRRRYLPDLTSDNAQRRQMAERMALNAPIQGSAADIIK 812 Query: 508 KAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + +L + + + G + + + + Sbjct: 813 IAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDAVEALVRAEMTSAYTMSVPLDVS 872 Query: 562 LPSSR 566 + + R Sbjct: 873 VGAGR 877 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 79/240 (32%), Gaps = 35/240 (14%) Query: 425 SKEQRAIGKVMELALGYQGGAKV------FKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 + E R I + + GY+ + MA G + + S + A Sbjct: 637 TAEGRQIRRAFVVGPGYETLLTADYSQIEMRIMAHLSGD--EGLIEAFGSGEDLHTFVAA 694 Query: 479 ESHHLWMQDQYPEFAVKDK-LIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 E+ L + + PE + K + + A G+ Sbjct: 695 EAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLASQLGI------------------AP 736 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGK 596 AR + + + V+ +RR Y++ G YL TS + R + Sbjct: 737 DEAREHMDAYFGRFGGVRDFLRGVVERARRDGYTETMLGRRRYLPDLTSDNAQRRQMAER 796 Query: 597 LTENI-VQAISRDILCEGMKNATKN----GY--DIVLTVHDEIVSETPDTPYFSVGTLCS 649 + N +Q + DI+ M + G+ ++L VHDE+V E Y +V L Sbjct: 797 MALNAPIQGSAADIIKIAMLGVDRALRAGGHASRLLLQVHDELVLEIAPGEYDAVEALVR 856 >gi|227530466|ref|ZP_03960515.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349571|gb|EEJ39862.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 886 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 82/515 (15%), Positives = 169/515 (32%), Gaps = 72/515 (13%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 +A ++ L R + ++ +L + + N+ + + + LGI + + Sbjct: 341 GFALGNDEQWLVSRDPELLKAPEVQNWLTNSKIKKDVFNAKAQIVGLNR-LGISLDGIDF 399 Query: 94 --ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA- 150 + S L TN + L + + EE + KG+ + P D Sbjct: 400 DLLLASYLLNTNDNSNDLGKLAHEHGYD-DVQTDEEV------YGKGAKRTIPDDDQLFF 452 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H+ E + + E ++L +D E L + + G +D + + Sbjct: 453 QHLANKARAIEQLRPQLFEQLEKNEQLPLYTDIELPLTHVLAKMEITGVHVDAQTLKNMG 512 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + + +++E I + + T L LF + ++ ++ + + + Sbjct: 513 SKLTERLTEIEEQIYQEAGEEF-NINSTKQLGKILFEKLKLPVIKKTKTGYSTAVD--VL 569 Query: 271 TQLAKDLILNRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 +LA + I KL + L SSD ++ ++TGR S Sbjct: 570 EKLAPQAPIVENILQYRQISKLQSTYIKGLLKVIHSSDQKIHTRY-LQTLTQTGRLSSVD 628 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAG 383 QN+P +R + S G ++ +D + Sbjct: 629 PNLQNIP------------------------VRLPEGRLIRQAFVPSHEGWQIFSSDYSQ 664 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ 442 +E RVLA I G+ + F NGEDI+ +T + F+ P ++ + R K + + Y Sbjct: 665 VELRVLAHITGDHNLQEDFKNGEDIHASTARRIFHLKPDQEIDRNMRRRAKAVNFGIVYG 724 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW-------------- 484 G A+ S +Q + + + + Sbjct: 725 ISDYGLAQRIHVSRSQAHEFIQNYFKEFPKVKDYIHDTIEFARQNGYVETITHRRRYLPD 784 Query: 485 -------MQDQYPEFAVKDKLIGTACELVKKAWRA 512 + A+ + G+A +++K A Sbjct: 785 INSKSFSRRSFAERTAMNTPIQGSAADIIKIAMIK 819 >gi|115424490|dbj|BAF33373.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 942 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 60/389 (15%), Positives = 128/389 (32%), Gaps = 66/389 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T + + + E L + + G+ ++ + ++ + + + K++ ++I L Sbjct: 530 TIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLAG 589 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNR 281 + L LF G+ + ++ T +L H + ++ +L + Sbjct: 590 TSF-NLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAK 648 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 L S+ + L + + GR+ + TGR S QN+P + Sbjct: 649 LQSTY-----VEGLLKVIRKETGRVHTRF-HQTLTATGRLSSSEPNLQNIPIR------- 695 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + + AD + IE R+LA ++G++ I Sbjct: 696 -----------------LEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 738 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF DI+ T A F P ++V+ R K + + Y G A+ Sbjct: 739 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEA 798 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++ + + + D S + ++ A+ Sbjct: 799 KRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAM 858 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + G+A +L+K A + + D Sbjct: 859 NTPIQGSAADLIKLAMVRIDRAMRDAQMD 887 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 8/119 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A+R KR + ++ +R Y + YL S+ + R++ + Sbjct: 797 EAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERT 856 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 N +Q + D++ M + ++L VHDE++ E P ++ L Sbjct: 857 AMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVR 915 >gi|229062271|ref|ZP_04199592.1| DNA polymerase I [Bacillus cereus AH603] gi|228716999|gb|EEL68680.1| DNA polymerase I [Bacillus cereus AH603] Length = 838 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 80/489 (16%), Positives = 166/489 (33%), Gaps = 68/489 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L + + ++ + K G+DI + ++A P+ Sbjct: 317 DAFKEWLANGEMRKHTFDAKRAIVALK-WKGVDIQGIDF--DLLIAAYLLDPADTDKDFR 373 Query: 115 ALNFSEHLTKMEEGKAL---IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 A + KM+E A+ + KG+ + P A HV K+ E Sbjct: 374 A------VAKMKETHAVKSDEEVYGKGAKRAVPEQEVVAEHVARKVHVLYDVKQIFEEEL 427 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E ++ ++ E L + + +G +D + + + E +A K+++++I +L Sbjct: 428 EKNEQYELFTELELPLARVLADMEVKGVTVDTERLRNMGEELAGRLKEMEQEIYELAGTE 487 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L + LF + ++ ++ T +L IL+ Sbjct: 488 F-NINSPKQLGVILFENLNLPVLKKTKTGYSTSADVLDKLMDHHAIIPKILHYRQLGKLN 546 Query: 289 ILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + V D ++ ++TGR S QN+P + Sbjct: 547 STYIEGLLKVVHDDSSKIHTRFN-QVLTQTGRLSSTEPNLQNIPIR-------------- 591 Query: 348 NRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I G + AD + IE RVLA IA ++ ++AF + Sbjct: 592 ----------LEEGRKIRQAFIPSEEGWIMYAADYSQIELRVLAHIAKDEGLVEAFQHDM 641 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T F D+V+ R K + + Y G ++ G ++++ Sbjct: 642 DIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAGEFIERY 701 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 ++ + + S + ++ A+ + G+ Sbjct: 702 LESFPGVQEYMADIVKDAKQKGYVSTLLNRRRYIPEITSRNFNLRSFAERTAMNTPIQGS 761 Query: 502 ACELVKKAW 510 A +++KKA Sbjct: 762 AADIIKKAM 770 Score = 46.3 bits (108), Expect = 0.016, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + G ++L VHDE++ E P + L +M Sbjct: 758 IQGSAADIIKKAMIIMADRLEEEGLQARLLLQVHDELIFEAPKEEVEKLEKLVPEVMEHA 817 Query: 655 PSWAKGLPLKAE 666 A +PLK + Sbjct: 818 IELA--VPLKVD 827 >gi|307707929|ref|ZP_07644404.1| DNA polymerase I [Streptococcus mitis NCTC 12261] gi|307615994|gb|EFN95192.1| DNA polymerase I [Streptococcus mitis NCTC 12261] Length = 877 Score = 223 bits (567), Expect = 9e-56, Method: Composition-based stats. Identities = 73/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%) Query: 157 QLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + F E+ R VE L ++L L D E+ L + + G ++ + + Sbjct: 440 EKFLEHLARKIAVLVETEPVLLEKLSENGQLELLYDMEQPLAFVLAKMEIAGIKVKKETL 499 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L++Q +KL ++I +L + L + LF + L + + Sbjct: 500 LEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLELPLEYTKKTKTGYSTA 558 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +LA + + I K+ + L + + +DG++ ++TGR S Sbjct: 559 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 617 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P +R + L+ +D Sbjct: 618 SVDPNLQNIP------------------------VRLEQGRLIRKAFVPEREDSVLLSSD 653 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + + Sbjct: 654 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGV 713 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474 Y G + + + + + D Sbjct: 714 VYGISDFGLSNNLGISRKGAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 773 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 S + ++ A+ + G+A +++K A + ++ + Sbjct: 774 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 825 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + V VP+ + K+ V + + +L + + ++ Sbjct: 826 LLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|284928848|ref|YP_003421370.1| DNA polymerase I [cyanobacterium UCYN-A] gi|284809307|gb|ADB95012.1| DNA polymerase I [cyanobacterium UCYN-A] Length = 955 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 110/620 (17%), Positives = 205/620 (33%), Gaps = 120/620 (19%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + L L ++ V N+ F+R++ L I + ++LA P K Sbjct: 413 EKVLEKLRPILENKCYPKVFQNAKFDRLVL---LNQGIQLNGVVFDTMLASYVINPD--K 467 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH--VQAWQLF---GEYCKR 165 + L+ ++LT + L + K + AN+ + A+ F KR Sbjct: 468 SHKLSSLCKQYLTNISSQDYLELKINKQQTIADLDITQVANYCGMDAYSTFLLVKPLKKR 527 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E + ++L + E+ L + + ++G ID++ + L E L+E I Sbjct: 528 LAEI--PILEKLF--LEVEQSLEKVLSKMENQGILIDIEYLNNLSEQNKVNLLCLEEKIY 583 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L LF + + T +H+ + +L D + Sbjct: 584 EEAKEKFNLE-SPKQLSKILFENLQLSTKKSKKITTGYSTNHAILEKLKGDHPIIDYLLK 642 Query: 286 GSAILKLNT-----LSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + KL + L V + R+ + + TGR S QN+P + Sbjct: 643 YRTLSKLQSTYIDNLPTLVSNQTHRIHTSFN-QSVTSTGRLSSSKPNLQNIPIRT----- 696 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 S +R I+ LV AD + IE R+LA ++ E + Sbjct: 697 -------------------ELSRKIRKAFISPKKWLLVSADYSQIELRILAHLSQEPLLV 737 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 KA+ + +DI+ + F+ ++++ E+R +GK + + Y G++ Sbjct: 738 KAYCDCQDIHTLSAQLLFDK--EEITIEERNLGKTINFGVIYGMGSQ------------- 782 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 ++ A G K + HQ + Sbjct: 783 ----------------------------RFAREAGVTPTKG------KDFIKKYHQRYKK 808 Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKG---D 576 +++ L + +G + R + S R L + D Sbjct: 809 VFQFLENLKIEAITKGYVTTILG----RRRYFNFYSD-------SLRNLYGCNPDEINLD 857 Query: 577 CSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK--NGYD--IVLTVHDEI 632 + + SQL+R +Q S DI+ M K Y ++L VHDE+ Sbjct: 858 ELKYSYSDSQLLRSAANAP------IQGSSADIIKVAMIKIEKLLRNYQAKLLLQVHDEL 911 Query: 633 VSETPDTPYFSVG-TLCSLM 651 V E P + + +M Sbjct: 912 VFEIPLEELEELQSEIKQIM 931 >gi|260578014|ref|ZP_05845937.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] gi|258603841|gb|EEW17095.1| DNA polymerase I [Corynebacterium jeikeium ATCC 43734] Length = 859 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 80/484 (16%), Positives = 155/484 (32%), Gaps = 77/484 (15%) Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 + + + L + +W+ S LK + + +L A Sbjct: 353 DEKVLAEWLANP-QATKWLHDSKQTYHTLQDQGLKLDGVEHD-----------TSLAAYL 400 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP----------LSDGER 185 + + + HV +A EL + L P D E Sbjct: 401 LRPDVRTLGLADVVQRHVGHELSENATGPERAQAVAELVRALTPEIEAAGQAELYFDLEV 460 Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L L+ + G +D + +L + + +L + L+ L Sbjct: 461 PLALILAAMEHAGIAVDDAALQELSDDYGARLNEEIAAARELAGEPELNLSSPKQLQKVL 520 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSEAVSS 301 F + ++ + + + + K ++ L EAV Sbjct: 521 FETFDLPKTKKTKTGYSTAAAELEKLAAQSNHPFLGHLMAHREYQKMKSTIDGLIEAVGD 580 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T GA+ TGR S QN+P + A Sbjct: 581 DGRIHTTFNQKGAA-TGRLSSSDPNLQNIPVRT------------------------DAG 615 Query: 362 DCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R+ G L+ AD + IE RV+A ++ + I+A+A+GED++ ++ F+ P Sbjct: 616 RKIRAAFTVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVP 675 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-- 474 +D+V+ E R K + L Y G ++ K A + + + + D Sbjct: 676 VDEVTPELRRRVKALSYGLVYGLSAFGLSQQLKISAGEAKRIMDNYFERFGGVKRYLDHV 735 Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + S + ++ A+ + GTA +++K A + Sbjct: 736 VEVAKETGYTETLYGRRRYLPELNSSNRVARENAERAALNAPIQGTAADIIKLAMLRVDR 795 Query: 516 GVLQ 519 + + Sbjct: 796 EITR 799 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 48/301 (15%), Positives = 101/301 (33%), Gaps = 35/301 (11%) Query: 387 RVLAW------IAGEDWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGK 433 ++A + D I+A + I+ T + + P + + G+ Sbjct: 557 HLMAHREYQKMKSTIDGLIEAVGDDGRIHTTFNQKGAATGRLSSSDPNLQNIPVRTDAGR 616 Query: 434 VMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA 493 + A G + T A + ++++ + + E + E H ++ + Sbjct: 617 KIRAAFTVGEGYETLLT-ADYSQIEMRVMAHLSEDAGLIEAYASGEDLHNYVGSR----- 670 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 V D + +++ +A G++ + G A+R+ + Sbjct: 671 VFDVPVDEVTPELRRRVKALSYGLVYGLSAFGLSQQLKISAG---EAKRIMDNYFERFGG 727 Query: 554 HKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILC 611 KR + V+ ++ Y++ G YL S R + N +Q + DI+ Sbjct: 728 VKRYLDHVVEVAKETGYTETLYGRRRYLPELNSSNRVARENAERAALNAPIQGTAADIIK 787 Query: 612 EGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL--PL 663 M + ++L VHDE+V E + + L+ + A L PL Sbjct: 788 LAMLRVDREITRQQLASRVLLQVHDELVVEV---APGELEQITELVEREMDAAAQLRVPL 844 Query: 664 K 664 Sbjct: 845 D 845 >gi|293376455|ref|ZP_06622684.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] gi|292644877|gb|EFF62958.1| DNA-directed DNA polymerase [Turicibacter sanguinis PC909] Length = 878 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 160/491 (32%), Gaps = 73/491 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110 + +L DE + + R+ G D+ +LA + + K Sbjct: 358 EAFMTFLADEKIAKDIFDLKRSRVAL-MWQGFDLR--GVAFDLLLATYIINPTNVSNEFK 414 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 ++ ++ + EE + KG+ + + A H K Sbjct: 415 KVAMSYDYD-DVLYDEEV------YGKGAKRAIAEESQIARHSIDIATAVLKLKETALEQ 467 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L + E L + + G +DL + ++ + + L+ +I + Sbjct: 468 LKEQDQLTLFEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHAGM 527 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + ++ ++ + + +L+ + + + Sbjct: 528 SF-NINSPKQLGEVLFDKLSLPVIKKTKTG--YSTNADVLEKLSDAHPIIKSIMEYRTLT 584 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL L +A SDG++ ++TGR S QN+P + Sbjct: 585 KLYSTYIEGLKKACYSDGKVHTIFN-QALTQTGRLSSIEPNLQNIPIR------------ 631 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G ++ AD + IE R+LA I+ + I+AF Sbjct: 632 ------------LEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKE 679 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKT 450 GEDI+ T F ++++ + R K + + Y AK + Sbjct: 680 GEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKKYID 739 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLI 499 + Q+ ++ + F + + + ++ A+ + Sbjct: 740 HYLETYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNAPIQ 799 Query: 500 GTACELVKKAW 510 GTA +++KKA Sbjct: 800 GTAADIIKKAM 810 Score = 42.8 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 69/193 (35%), Gaps = 27/193 (13%) Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF-----ACVVQEGGSISARRVANVPRL 549 +D TA ++ K + + + K + G A + E +I+ + Sbjct: 681 EDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKKYIDH 740 Query: 550 VMRRHKRDVHIVLPSSRRLVYSD----VKGDCSYLNTATSQLMRERTYGGKLTENI-VQA 604 + + + + + + + Y+ + + R +G + N +Q Sbjct: 741 YLETYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNAPIQG 800 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 + DI+ + M + ++L VHDE++ E P + + L+TK Sbjct: 801 TAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEVPQEE---LDLMIELVTKT---M 854 Query: 659 KG-----LPLKAE 666 + +PLKA+ Sbjct: 855 EDVVKLQVPLKAD 867 >gi|259503619|ref|ZP_05746521.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] gi|259168443|gb|EEW52938.1| DNA-directed DNA polymerase I [Lactobacillus antri DSM 16041] Length = 885 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 82/520 (15%), Positives = 174/520 (33%), Gaps = 68/520 (13%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 + D L R + L + L V N+ +I+ LGID+ + + Sbjct: 341 GFVIGDGKTWLVSRDAELLKQDPLKKLLESPAVAKNVFNAK-AQIVGLHRLGIDLRNVDF 399 Query: 94 --ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RA 150 + S L TN + L L ++ + EE + KG+ + P D Sbjct: 400 DLLLASYLLNTNDNSNDLGQVALEHDY-HEVATDEEV------YGKGAKRAIPADDQVFY 452 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H+ + + + + ++ +D E L + + G +++ + + Sbjct: 453 THLAQKARAIDDLRAPLFKKLDDNQQTPLYTDIEVPLTRVLAAMEITGIKVNAQTLKDMG 512 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILS 266 + + ++ I + T L LF + ++ ++ + + Sbjct: 513 SKLTERLADIESQIYAAAGEEF-NINSTKQLGHILFEKLKLPVIKKTKTGYSTAVDVLEK 571 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 ++ + +D++ R + + L SSD ++ ++TGR S Sbjct: 572 LADQAPIVEDILQYRQIAKLQSTYITGLLKVIHSSDQKIHTRY-LQTLTQTGRLSSVDPN 630 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIE 385 QN+P +R + S+ G ++ +D + +E Sbjct: 631 LQNIP------------------------VRLPEGRLIRKAFVPSHAGWQIFSSDYSQVE 666 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ-- 442 RVLA I G+ + F NGEDI+ +T + F+ P D ++ + R K + + Y Sbjct: 667 LRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLPADAEIDRNMRRRAKAVNFGIVYGIS 726 Query: 443 --GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH------------------ 482 G A+ + +Q + + + D A + Sbjct: 727 DYGLAQRIHVSRAQAHEFIQNYFKEFPGVKKYIDDTIAFAREHGYVETITHRRRYLPDIH 786 Query: 483 ---LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A+ + G+A +++K A + + Q Sbjct: 787 AKSFSRRSFAERTAMNTPIQGSAADIIKIAMIRMKEEIKQ 826 >gi|313608606|gb|EFR84470.1| DNA polymerase I [Listeria monocytogenes FSL F2-208] Length = 531 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 78/482 (16%), Positives = 161/482 (33%), Gaps = 62/482 (12%) Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 V +++ + + I + +LA PS + ++ Sbjct: 22 TKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 75 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E + A + KG+ S P + A+H+ + ++ + A E ++L + D E Sbjct: 76 EVETDEAVYGKGAKRSTPEESIVASHLARKAVAIADLEKRLVADLEENEQLALMEDLELP 135 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + +G +D + + ++ +A K L+E I L + L + LF Sbjct: 136 LTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGVILF 194 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302 G+ V ++ T +L + D IL + L + Sbjct: 195 EKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTDKET 254 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 ++ ++TGR S QN+P + Sbjct: 255 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 289 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 290 KIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 349 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474 D+V R K + + Y G ++ + ++ + + + Sbjct: 350 DEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQDIV 409 Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + S + ++ A+ + G+A +++KKA + Sbjct: 410 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILMSER 469 Query: 517 VL 518 ++ Sbjct: 470 LV 471 Score = 44.0 bits (102), Expect = 0.093, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M K ++L VHDE++ E P+ + + Sbjct: 451 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 503 >gi|298529592|ref|ZP_07016995.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] gi|298511028|gb|EFI34931.1| DNA polymerase I [Desulfonatronospira thiodismutans ASO3-1] Length = 845 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 85/417 (20%), Positives = 136/417 (32%), Gaps = 67/417 (16%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 VE + L + + E L + + G IDL + + L I Sbjct: 430 VEKRLDAAGLLGLMQELEMPLVPVLCRMESAGIGIDLAAFDNFLRQVKKSLDDLTASIYS 489 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 L + R T LF G+ + S+ + + +D + L Sbjct: 490 LAGKEF-NIRSTQQTAQVLFDELGLKARRKTPKG-AYSTSNVVLESMRRDHDIVDLILQY 547 Query: 287 SAILKL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL L V GRL T A+ TGR S QN+P Sbjct: 548 RTLEKLRSTYLEPLPRKVDVGGRLHTTFNQL-ATATGRLSSSNPNLQNIP---------- 596 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 G +R+C S GK LV AD + IE R+LA ++ + ++A Sbjct: 597 --------------IKGEFGPRMRACFKPSKGKLLVAADYSQIELRILAHMSMDPNLLQA 642 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGL 457 F EDI+ T F+ I +VS+++R K + L Y G + Sbjct: 643 FGGNEDIHRRTAGLLFDKDIQEVSQDERRKAKTINFGLLYGMGPQKLSRELSISMEEAKE 702 Query: 458 DLQQFS----------QNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKD 496 + + Q ++ + + + S + M Q AV Sbjct: 703 FISVYFSKLDRVRDFYQQIEEKAQEQGYVTTMAGRRRLLPDINSRNTNMAQQARRTAVNT 762 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543 + G+A +++KKA A VLQ+ +L V + RV Sbjct: 763 VIQGSAADVIKKAMLAVDSDSELRSLGSVMVLQVHDELLLEVDAPVAQKAGERLARV 819 >gi|313892366|ref|ZP_07825958.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] gi|313119225|gb|EFR42425.1| DNA-directed DNA polymerase [Dialister microaerophilus UPII 345-E] Length = 857 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 64/370 (17%), Positives = 131/370 (35%), Gaps = 60/370 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E+ L + + G ID + K+++ + ++ +KL +I + + L Sbjct: 457 EVEQPLIEVLAEMEKNGISIDEENWKKVRKSMKEKEEKLLLEIYREAGEEF-NVNSPKQL 515 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS 300 LF G+ ++ + + LA D + + KL +T +A+ Sbjct: 516 SHILFDKMGMPTGKKTK--TGYSTAADVLESLAIDYPFVKNILEYRTLAKLISTYLDAIP 573 Query: 301 -----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 R+ + + TGR S QN+P + Sbjct: 574 LLVRKETKRVHTSFN-QMVTATGRLSSSDPNLQNIPVRT--------------------- 611 Query: 356 PLGLASDCVRSCIIASNGKKL-VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +RS + G + +D + +E RVLA ++G++ I+AF N EDI+ T + Sbjct: 612 ---EEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTAS 668 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F P ++V+ EQR+ K + + Y G +K ++ + + Sbjct: 669 EVFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIH 728 Query: 471 TFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 F D S + + A+ + G+A +++K A Sbjct: 729 EFMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIA 788 Query: 510 WRAKHQGVLQ 519 ++ + + Sbjct: 789 MIQVYEKMKK 798 >gi|310826548|ref|YP_003958905.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] gi|308738282|gb|ADO35942.1| hypothetical protein ELI_0933 [Eubacterium limosum KIST612] Length = 885 Score = 223 bits (567), Expect = 1e-55, Method: Composition-based stats. Identities = 75/396 (18%), Positives = 148/396 (37%), Gaps = 69/396 (17%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E L + ++ + G+++D+ + +L ++ + L +I +L + + T Sbjct: 483 QNIELPLLKIMASMEELGFKVDIHQLEELSVEFEKKIETLTSEIYELAEEDDFNINSTKQ 542 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----L 295 L LF + +V ++ + + QL + + I KL++ L Sbjct: 543 LGTILFDKLKLPVVKKTK--TGYSTNAEVLDQLVLFHPIIQKIIDYRMISKLDSTYGKGL 600 Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + V ++ T + TGR S QN+P Sbjct: 601 IKLVDPKTHKIYSTFN-QTVTATGRLSSSDPNLQNIP----------------------- 636 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + S G + LV AD + IE RVLA ++G++ I F +DI+ T Sbjct: 637 -VKTEMGREIRKVFVPSAGDRVLVDADYSQIELRVLAHLSGDENLIDTFVKNQDIHTRTA 695 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ--------------GGAKVFKTMASHCGLDL 459 ++ FN P+D VS+EQR+ K + L Y G A+ + + + Sbjct: 696 SEIFNVPMDAVSREQRSHAKAINFGLIYGKQAFSLGKDLGITRGEAQSYIDLYFSRYPKV 755 Query: 460 QQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 ++ +N+K+ + + + + S + + A+ + G A +++K Sbjct: 756 LEYMENIKAEAKEKGYVTTIWGRRRYITEINSRNRMLVQAGERMALNTPIQGAAADIIKI 815 Query: 509 AWRA----------KHQGVLQLWKDLTEGFACVVQE 534 A K + +LQ+ +L QE Sbjct: 816 AMIKVYDRLEREGLKSKLILQVHDELIIDTLKTEQE 851 Score = 41.3 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%) Query: 560 IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMK--- 615 I + + + + G Y+ S+ G ++ N +Q + DI+ M Sbjct: 762 IKAEAKEKGYVTTIWGRRRYITEINSRNRMLVQAGERMALNTPIQGAAADIIKIAMIKVY 821 Query: 616 -NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTL 647 + G ++L VHDE++ +T T +V L Sbjct: 822 DRLEREGLKSKLILQVHDELIIDTLKTEQETVMKL 856 >gi|289166948|ref|YP_003445215.1| DNA-directed DNA polymerase [Streptococcus mitis B6] gi|288906513|emb|CBJ21345.1| DNA-directed DNA polymerase [Streptococcus mitis B6] Length = 877 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 73/472 (15%), Positives = 153/472 (32%), Gaps = 76/472 (16%) Query: 157 QLFGEYCKRD----VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLV 206 + F E+ R VE L ++L L D E+ L + + G + + + Sbjct: 440 EKFLEHLARKLAVLVETEPILLEKLSENGQLELLYDMEQPLAFVLAKMEIAGITVKKETL 499 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 L++Q +KL ++I +L + L + LF + L + + Sbjct: 500 LEMQAENELVIEKLTQEIYELAGEEF-NINSPKQLGVLLFEKLALPLEYTKKTKTGYSTA 558 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 + +LA + + I K+ + L + + +DG++ ++TGR S Sbjct: 559 VDVLERLAPIAPIVKKILDYRQIAKIQSTYVIGLQDWILADGKIHTRYV-QDLTQTGRLS 617 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVAD 380 QN+P + +R + L+ +D Sbjct: 618 SVDPNLQNIPAR------------------------LEQGRLIRKAFVPEWENSVLLSSD 653 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELAL 439 + IE RVLA I+ ++ IKAF G DI+ +T + F + V+ R K + + Sbjct: 654 YSQIELRVLAHISKDEHLIKAFQEGADIHTSTAMRVFGIERPEDVTANDRRNAKAVNFGV 713 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474 Y G + + + + + D Sbjct: 714 VYGISDFGLSNNLGISRKEAKAYIDTYFERFPGIKNYMDEVVREARDKGYVETLFKRRRE 773 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQE 534 S + ++ A+ + G+A +++K A + ++ + Sbjct: 774 LPDINSRNFNIRGFAERTAINSPIQGSAADILKIAMIQLDKALV--------AGGYQTKM 825 Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQ 586 + V VP+ + K+ V + + +L + + ++ Sbjct: 826 LLQVHDEIVLEVPKSELAEMKKLVKQTMEEAIQLSVPLIADENEGATWYEAK 877 >gi|326333433|ref|ZP_08199676.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] gi|325948738|gb|EGD40835.1| DNA polymerase I [Nocardioidaceae bacterium Broad-1] Length = 895 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 92/524 (17%), Positives = 174/524 (33%), Gaps = 93/524 (17%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW------ICTSVLARTNGLP-SSLKNAC 113 L D T + H++ K + I + W T++ A S A Sbjct: 378 LADATKPKIMHDA--------KGPELAIDAHGWSLRGLVTDTALSAYIVAPDQRSYDLAD 429 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 L L + + K E+ + F + T + + + + D Sbjct: 430 LTLRYLKRELKQEDDGGQESLFGDDEVGGDGVATTSMLYAR--AVLDLAAELDSAVEAAG 487 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 RL LS+ E L L + G +D + + L+ A + K+ ++ + I Sbjct: 488 GDRL--LSEVELPLLHLLARMEKTGIAVDTEHLDALERHFAGQMKQAADEAYGVIGKEI- 544 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE-------GTLKSI---LSHSNITQLAKDLILNRLA 283 + L++ LF + ++ L+ + H + L + + RL Sbjct: 545 NLGSPKQLQVVLFDELDMPKTKRTKTGWTTDADALQQLYVKTEHPFLLALLRHRDVTRLR 604 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L + V DGR+ T A+ TGR S QN+P + Sbjct: 605 VT------IEGLLKTVQDDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPVRT--------- 648 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + G + L+ AD + IE R++A ++ ++ I+AF Sbjct: 649 ---------------EEGRGIRKGFVVGGGFESLMTADYSQIEMRIMAHLSEDELLIEAF 693 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 +G D + T A+ F D VS EQRA K M L Y G ++ S Sbjct: 694 RSGRDFHSITAARVFGVDPDAVSVEQRAKIKAMNYGLAYGLSAFGLSQQLGIEPSEARGL 753 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 ++++ + + E+ + ++ A+ Sbjct: 754 MEEYFETFGGIRDYLRSLVEEARRTGYTETIMGRRRYLPDLLSDNRQRRETAERMALNAP 813 Query: 498 LIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEG 535 + G+A +L+K A + ++ + + V G Sbjct: 814 IQGSAADLIKVAMLRVQAAIDEADLSSRMLLQVHDELVFEVAPG 857 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 11/126 (8%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYL-NTATSQLMRERTYG 594 AR + + + ++ +RR Y++ + G YL + + R T Sbjct: 747 PSEARGLMEEYFETFGGIRDYLRSLVEEARRTGYTETIMGRRRYLPDLLSDNRQRRET-A 805 Query: 595 GKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 ++ N +Q + D++ M ++L VHDE+V E ++ +L Sbjct: 806 ERMALNAPIQGSAADLIKVAMLRVQAAIDEADLSSRMLLQVHDELVFEVAPGEREALESL 865 Query: 648 C-SLMT 652 + M Sbjct: 866 VRAQMG 871 >gi|323704288|ref|ZP_08115867.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] gi|38146977|gb|AAR11873.1| DNA polymerase I [Thermoanaerobacterium thermosulfurigenes] gi|323536354|gb|EGB26126.1| DNA polymerase I [Thermoanaerobacterium xylanolyticum LX-11] Length = 867 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 81/540 (15%), Positives = 187/540 (34%), Gaps = 88/540 (16%) Query: 37 WDDEPVKLWDRTEQS-----AMPS-DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS 90 D +K + D + L ++ + + H+ + ++ GI++ Sbjct: 320 IYDGKIKAVSFACGDGSFFVEIDDYDNFKLLNNDKLTLIGHDLK-DFLVNISYCGIELNC 378 Query: 91 KRWICTSVLARTNGLPSSLKNACLALN------FSEHLTKMEEGKALIARFCKGSIDSPP 144 K + T+++ S + L + +G+ + Sbjct: 379 K-ILDTAIMTYLLNPSESNYDISRVLKKYLKEDLQNIDDIVGKGRNKKSYDDIDKKLLVD 437 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 Y C+ A+++ + +++E L IPL + + +++ G+ +D D Sbjct: 438 YMCSAASNLSKLKDKLMSFIKEMEMEDLLKNVEIPLIE-------VLKSMEVYGFTLDKD 490 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT---- 260 ++ + + I ++ K+ +DI + T L +LF + + ++ Sbjct: 491 VLRSISKEIDEKTDKIVKDIYDAAGYEF-NINSTKQLSEFLFDKLNLPAIKKTKTGYSTD 549 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 ++ + + ++I R + ++ + + R+ T + A+ TGR Sbjct: 550 MEVLAELIPYNDIVGEIIEYRQLMKLKST-YIDGFIPIMDENNRVHSTFKQTVAA-TGRI 607 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P +E +R ++S ++ A Sbjct: 608 SSTEPNLQNIPVRE------------------------EFGRRIRKAFVSSYEDGLIISA 643 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE RVLA ++ ++ I++F N EDI++ T ++ F ++V+ E R K + + Sbjct: 644 DYSQIELRVLAHLSEDEKLIESFLNNEDIHLRTASEVFKVSKEEVTSEMRRRAKAVNFGI 703 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------------------- 474 Y G +K K + + K + D Sbjct: 704 VYGISDYGLSKDLKISRKEAKEYIDNYFDRYKGVKNYIDSIVKFAKENGYVTTILNRRRY 763 Query: 475 WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + S + + A+ + G+A +++K + K + +LQ+ +L Sbjct: 764 IPEINSKNFNQRSFGERMAMNTPIQGSAADIIKMSMVKVYNELKERGLKSRLILQVHDEL 823 Score = 43.6 bits (101), Expect = 0.10, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 11/113 (9%) Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAI 605 + V V + + + Y+ S+ +R++G ++ N +Q Sbjct: 734 YKGVKNYIDSIVKFAKENGYVTTILNRR---RYIPEINSKNFNQRSFGERMAMNTPIQGS 790 Query: 606 SRDILCEGMKNA----TKNGYD--IVLTVHDEIVSET-PDTPYFSVGTLCSLM 651 + DI+ M + G ++L VHDE++ +T PD L S+M Sbjct: 791 AADIIKMSMVKVYNELKERGLKSRLILQVHDELIIDTHPDEVEIVKELLKSIM 843 >gi|157737513|ref|YP_001490196.1| DNA polymerase I [Arcobacter butzleri RM4018] gi|157699367|gb|ABV67527.1| DNA polymerase I [Arcobacter butzleri RM4018] Length = 896 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 106/598 (17%), Positives = 193/598 (32%), Gaps = 112/598 (18%) Query: 5 FIDIETRSPQPLPKVGV----WAYAEQ-AVITLCAYAWDD-EPVKLWDRTEQSAMPSDLL 58 D ET S + + +AY E A + + + + + + L Sbjct: 331 SFDTET-SDLDVKNAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAKNAII--QLN 387 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 +Y V N ++ + K I++ L + F Sbjct: 388 RY------KLVLQNFKYDYEIIKNNFDIELRLYADTMILSWLLNTNEKVGLDY-QIDKYF 440 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + + F I + EY D T LFK+ + Sbjct: 441 DHKMISFTDVVKKGENFSNVDI----------------ERACEYAAEDALMTLRLFKKQL 484 Query: 179 PLS-------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + + E D + + G ++D++L+ + +EL + +L I Sbjct: 485 EIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIY 544 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 + T G+ + L LF G+ ++ T +++L+ L+L Sbjct: 545 Q-TSGVEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYR 603 Query: 283 ASSGSAILKLNTLSEA--VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + L E S D R+ + G + TGR S QN+P + S Sbjct: 604 EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTG-TATGRLSSKNPNLQNIPTKSDS---- 658 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + +R I +G KLV D + IE R+LA + + ++ Sbjct: 659 --------------------TIQIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVE 698 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCG 456 AF N DI+ T K F ++ +KE+R I K + L Y G+K + Sbjct: 699 AFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGETLGIPSKEAK 755 Query: 457 LDLQQFSQNVKSTSTF----EDWEQAESH----------------HLWMQDQYPEFAVKD 496 + + + KS + ED+ + + M+ Y AV Sbjct: 756 QYIDSYFEAFKSVKDYLKSIEDFAHINGYVKTLLNRKRLFDFNSANAMMKAAYLREAVNT 815 Query: 497 KLIGTACELVKKAWRAKHQG---------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 G+A +L+K A +Q +LQ+ +L E + S + + Sbjct: 816 LFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVFEVKDEFVEEITFSIKNIME 873 >gi|317471923|ref|ZP_07931257.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] gi|316900589|gb|EFV22569.1| DNA polymerase family A [Anaerostipes sp. 3_2_56FAA] Length = 420 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 68/408 (16%), Positives = 134/408 (32%), Gaps = 65/408 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E + + RG +D + + + + ++L E I K + Sbjct: 20 YEEIEIPTMVALHDMEVRGIHVDRKALKEYGDQLIGRIEELRELIYKEAGEEF-NINSPK 78 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF ++ ++ T +L IL + + L+ Sbjct: 79 QLGVVLFEHMKLEGGKKTKTGYSTSVDVLEKIEHLYPIISYILEYRQLTKLKSTYADGLA 138 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + D R+ G + TGR S QN+P + Sbjct: 139 NYIGDDERIHGKFN-QTITATGRISSTEPNLQNIPAR----------------------- 174 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + G V AD + IE RVLA ++ + I A+ +DI+ T ++ Sbjct: 175 -VELGRAIRKVFLPEEGYTFVDADYSQIELRVLAHLSRDKNLIHAYEMEQDIHARTASEV 233 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F PID+VS QR K + + Y G ++ K + ++ + + Sbjct: 234 FGVPIDQVSSIQRRDAKAVNFGIVYGLSAFGLSQDLKITRKQAQEYIDKYFETYPKVKKY 293 Query: 473 ED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + +S + ++ A+ + G+A +++K A Sbjct: 294 LNREVEKGKEEGFVTTMFQRIRPIPELKSSNFMQRNFGERVAMNSPIQGSAADIIKIAMI 353 Query: 512 AKHQG----------VLQLWKDLT-EGFACVVQEGGSISARRVANVPR 548 + +LQ+ +L E V+E I R + + + Sbjct: 354 RVNMELKKRKLKSRLILQIHDELLIEAHDSEVEEVKGILTREMMSAAK 401 Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 10/71 (14%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642 +R +G ++ N +Q + DI+ M K ++L +HDE++ E D+ Sbjct: 327 QRNFGERVAMNSPIQGSAADIIKIAMIRVNMELKKRKLKSRLILQIHDELLIEAHDSE-- 384 Query: 643 SVGTLCSLMTK 653 V + ++T+ Sbjct: 385 -VEEVKGILTR 394 >gi|315637294|ref|ZP_07892513.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] gi|315478458|gb|EFU69172.1| DNA-directed DNA polymerase I [Arcobacter butzleri JV22] Length = 896 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 106/598 (17%), Positives = 191/598 (31%), Gaps = 112/598 (18%) Query: 5 FIDIETRSPQPLPKVGV----WAYAEQ-AVITLCAYAWDD-EPVKLWDRTEQSAMPSDLL 58 D ET S + + +AY E A + + + + + + L Sbjct: 331 SFDTET-SDLDVKNAKLVGFSFAYEENKAYYVPIGHVYLGVGNQISLEAAKNAII--QLN 387 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 +Y V N ++ + K I++ L + F Sbjct: 388 RY------KLVLQNFKYDYEIIKNNFDIELRLYADTMILSWLLNTNEKVGLDY-QIDKYF 440 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + + F I + EY D T LFK+ + Sbjct: 441 DHKMISFTDVVKKGENFSNVDI----------------ERACEYAAEDALMTLRLFKKQL 484 Query: 179 PLS-------------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + + E D + + G ++D++L+ + +EL + +L I Sbjct: 485 EIFKEKEEEEILNLAFEVEFDFIYVLANMEMNGIKVDVNLLKEYKELSNKNINELTAKIY 544 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 + T G + L LF G+ ++ T +++L+ L+L Sbjct: 545 Q-TSGAEFNINSPKQLGALLFETLGLPTAKKTKTGYSTDEAVLNGLINEHEVIPLLLQYR 603 Query: 283 ASSGSAILKLNTLSEA--VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + L E S D R+ + G + TGR S QN+P + S Sbjct: 604 EAYKLQSTYIEPLLELGSKSDDNRIHTSFLHTG-TATGRLSSKNPNLQNIPTKSDSNI-- 660 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I +G KLV D + IE R+LA + + ++ Sbjct: 661 ----------------------QIRKAFIPKDGYKLVAVDYSQIELRLLAHFSQDKALVE 698 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCG 456 AF N DI+ T K F ++ +KE+R I K + L Y G+K + Sbjct: 699 AFENDLDIHYQTAVKIFG---EENAKEKRGIAKSINFGLLYGMGSKKLGETLGIPSKEAK 755 Query: 457 LDLQQFSQNVKSTSTF----EDWEQAESH----------------HLWMQDQYPEFAVKD 496 + + + KS + ED+ + + M+ Y AV Sbjct: 756 QYIDSYFEAFKSVKDYLKSIEDFANINGYVKTLLNRKRLFDFNSANAMMKAAYLREAVNT 815 Query: 497 KLIGTACELVKKAWRAKHQG---------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 G+A +L+K A +Q +LQ+ +L E + S + + Sbjct: 816 LFQGSAADLIKLAMINIYQKYKDNENIKLLLQIHDELVFEVKDEFVEEITFSIKNIME 873 >gi|257875613|ref|ZP_05655266.1| DNA polymerase I [Enterococcus casseliflavus EC20] gi|257809779|gb|EEV38599.1| DNA polymerase I [Enterococcus casseliflavus EC20] Length = 881 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 69/495 (13%), Positives = 151/495 (30%), Gaps = 83/495 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 +L+DE +++ + + K +LA + Sbjct: 361 FTNWLKDEERKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYLLDTN--DTNNDIA 415 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H KG+ P D F + R V A L + Sbjct: 416 GVAAHYGYDAIQSDEAIY-GKGAKKGLPADEED---------FFAHLARKVAAITNLTPK 465 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L ++ + G ++D + +++ AQ +++E I Sbjct: 466 LTEELAAKNQTALFEEMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYA 525 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRL 282 + L + LF G+ ++ ++ + + + +D++ R Sbjct: 526 EAGETF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQ 584 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + + L + + DG++ ++TGR S QN+P + Sbjct: 585 IAKIQST-YVEGLLKVIQGDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR--------- 633 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + + +D + IE RVLA I+ + +A Sbjct: 634 ---------------LEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEA 678 Query: 402 FANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 F G+DI+ +T + F + V+ R K + + Y G ++ Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAQ 738 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + + + T+ + S + ++ A+ Sbjct: 739 QYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAIN 798 Query: 496 DKLIGTACELVKKAW 510 + G+A +++K A Sbjct: 799 TPIQGSAADILKIAM 813 >gi|303232660|ref|ZP_07319345.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4] gi|302481146|gb|EFL44221.1| DNA-directed DNA polymerase [Atopobium vaginae PB189-T1-4] Length = 1126 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 75/504 (14%), Positives = 146/504 (28%), Gaps = 79/504 (15%) Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 K+ + P+ W + + + A + + + L+ S Sbjct: 612 KQLFSLVYPADSWRAARIDYAAVAIDAVFDTQLAAYLLNSDAASYDVDELLMQYAGVASY 671 Query: 141 DSPPYDCTRANHV----------QAWQLFGEYCKRDVEATREL--FKRLIPLSDGERDLW 188 P A+ + L + E L Sbjct: 672 PQQPIGSAAAHGFATDDDQKALSEMLACAKAQRVLQAPLMYALMLDESYDVYCGIELPLI 731 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G +D D++ + I +E + + I + L LF + Sbjct: 732 CVLLDMERTGLHVDTDILHEQSMAINREINHMLATLHTDIGETI-NIDSPMQLSHVLFDV 790 Query: 249 TGIDLVDMSE------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 + + + T L + LIL+ + L+ L + D Sbjct: 791 WQLPTKGLKKTKRGYFSTNAKTLETLSKQDDRVQLILDYRERAKLKSTYLDALPAQIKPD 850 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ T A+ TGR S QN+P + Sbjct: 851 GRIHTTFNQTVAA-TGRLSSSDPNLQNIPTRS------------------------QLGH 885 Query: 363 CVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 VR ++ + D + IE R+LA ++ + I AF +G D + T ++ F D Sbjct: 886 RVRKAFTVADDSVFLTCDYSQIELRLLAHLSQDPHLIAAFNSGADFHAATASRIFGIEQD 945 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V+ + R+ K + + Y G A K + + ++ + F D A Sbjct: 946 AVTPQLRSRAKAVNFGIVYGQQAFGLASSLKISRATAKEMIDKYFEVYPCVREFLDESVA 1005 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG- 516 + + ++ A+ + G+A +++K A + Sbjct: 1006 FARAHGYVPTMYGRKRHIEHINASNFQLRSFAERTAMNHPMQGSAADIIKLAMIEVEKRL 1065 Query: 517 ---------VLQLWKDLTEGFACV 531 VLQ+ +L A Sbjct: 1066 RASSLRAHLVLQIHDELDFEVATA 1089 >gi|47093102|ref|ZP_00230879.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|226224166|ref|YP_002758273.1| DNA polymerase I [Listeria monocytogenes Clip81459] gi|254852188|ref|ZP_05241536.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300764769|ref|ZP_07074759.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] gi|47018542|gb|EAL09298.1| DNA polymerase I [Listeria monocytogenes str. 4b H7858] gi|225876628|emb|CAS05337.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605493|gb|EEW18101.1| DNA polymerase I [Listeria monocytogenes FSL R2-503] gi|300514445|gb|EFK41502.1| DNA polymerase I [Listeria monocytogenes FSL N1-017] Length = 875 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 169/502 (33%), Gaps = 62/502 (12%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 T+++A S++ + + V +++ + + I + +LA P Sbjct: 346 FTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNP 402 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S + ++ E + A + KG+ S P + A H+ + ++ Sbjct: 403 SDSIDDFTSVAIRHD---YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKR 459 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + E ++L + D E L + + +G +D + + ++ +A K L+E I Sbjct: 460 LVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHS 519 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L + LF G+ V ++ T +L + D IL Sbjct: 520 LAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 578 Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + L + ++ ++TGR S QN+P + Sbjct: 579 LGKIQSTYIEGLLKVTDKETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR--------- 628 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + S G K+ AD + +E RVLA I+ ++ I A Sbjct: 629 ---------------LEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYA 673 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F + DI+ T F+ D+V R K + + Y G ++ Sbjct: 674 FKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKD 733 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + ++ + + + + S + ++ A+ Sbjct: 734 FIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNT 793 Query: 497 KLIGTACELVKKAWRAKHQGVL 518 + G+A +++KKA + ++ Sbjct: 794 PIQGSAADIIKKAMILMSERLV 815 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M K ++L VHDE++ E P+ + + Sbjct: 795 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847 >gi|325842039|ref|ZP_08167576.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] gi|325489761|gb|EGC92117.1| DNA-directed DNA polymerase [Turicibacter sp. HGF1] Length = 878 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 75/491 (15%), Positives = 160/491 (32%), Gaps = 73/491 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110 + +L DE + + R+ G D+ +LA + + K Sbjct: 358 EAFMTFLADEKIAKDIFDLKRSRVAL-MWQGFDLR--GVAFDLLLATYIINPTNVSNEFK 414 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 ++ ++ + EE + KG+ + + A H K Sbjct: 415 KVAMSYDYD-DVLYDEEV------YGKGAKRAIAEESQIARHSIDIATAVLKLKETALEQ 467 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + +L + E L + + G +DL + ++ + + L+ +I + Sbjct: 468 LKEQDQLTLYEEMEMPLADVLAEMEFNGMALDLKTLDEMGQDLKGRITALENEIYEHAGM 527 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + ++ ++ + + +L+ + + + Sbjct: 528 SF-NINSPKQLGEVLFDKLSLPVIKKTKTG--YSTNADVLEKLSDAHPIIKSIMEYRTLT 584 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL L +A SDG++ ++TGR S QN+P + Sbjct: 585 KLYSTYIEGLKKACYSDGKVHTIFN-QALTQTGRLSSIEPNLQNIPIR------------ 631 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + G ++ AD + IE R+LA I+ + I+AF Sbjct: 632 ------------LEEGRLIRKAFVPSEEGWVILGADYSQIELRILAHISNTESLIEAFKE 679 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKT 450 GEDI+ T F ++++ + R K + + Y AK + Sbjct: 680 GEDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKKYID 739 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKLI 499 + Q+ ++ + F + + + ++ A+ + Sbjct: 740 HYLKTYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNAPIQ 799 Query: 500 GTACELVKKAW 510 GTA +++KKA Sbjct: 800 GTAADIIKKAM 810 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 31/193 (16%), Positives = 70/193 (36%), Gaps = 27/193 (13%) Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGF-----ACVVQEGGSISARRVANVPRL 549 +D TA ++ K + + + K + G A + E +I+ + Sbjct: 681 EDIHKKTAMDVFKVSEEEMTSDLRRSAKAINFGIIYGMSAFGLSENLNITQKEAKKYIDH 740 Query: 550 VMRRHKRDVHIVLPSSRRLVYSD----VKGDCSYLNTATSQLMRERTYGGKLTENI-VQA 604 ++ + + + + + + Y+ + + R +G + N +Q Sbjct: 741 YLKTYSGINQYMEDTVKDAKFHGYATTLFNRRRYIPELSQKNYALRQFGERTAMNAPIQG 800 Query: 605 ISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 + DI+ + M + ++L VHDE++ E P + + L+TK Sbjct: 801 TAADIIKKAMIDVANAMKEKQVKSRLLLQVHDELIFEVPQEE---LDLMIELVTKT---M 854 Query: 659 KG-----LPLKAE 666 + +PLKA+ Sbjct: 855 EDVVKLQVPLKAD 867 >gi|300871901|ref|YP_003786774.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] gi|300689602|gb|ADK32273.1| DNA polymerase I [Brachyspira pilosicoli 95/1000] Length = 931 Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats. Identities = 94/599 (15%), Positives = 185/599 (30%), Gaps = 113/599 (18%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD-----LLQY 60 ID ET L I ++A + D + ++ + + + Sbjct: 364 IDFETTGLDTLTD----------EIIGISFAIKSKEAFYLDLSGRTNIDKEACKKLVFDT 413 Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L E + + HN +E + + ID +++A PS + L S Sbjct: 414 LAKEDIKIIGHNLKYEYKMMRA---IDKKMGNMYFDTMVAAYLINPSRGRYNMDDLALS- 469 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG--EYCKRDVEATRELFKRLI 178 +I + +L EY D + T ++ Sbjct: 470 -------------YLSYNTIKYSDITDNAKKTLLDVELKDVVEYACEDADITFRFYEYFA 516 Query: 179 PLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 PL + E L + + G I + + L E A +K I + Sbjct: 517 PLLNTYNLEDLFFNVEMPLISVLADMEFDGVYISTEKMKSLSEEYASLLEKTKAKIYEKA 576 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLA 283 + + L LF I+ ++ T + +LA+ + +L Sbjct: 577 GEEF-NLQSPKQLEYILFEKLKINSTKKTK-TGAYSTDEEVLRELAQREKIAEYMLTYRK 634 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S L+ V R+ + + TGR S QN+P + Sbjct: 635 YSKLKNTYLDVFPTLVHKKTNRIHASFN-QTVTATGRLSSSEPNLQNIPAR--------- 684 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 G +R+ IA G L+ AD + IE R+LA + + ++AF Sbjct: 685 ---------------GDEGKDIRNTFIAEKGNVLIAADYSQIELRLLAHFSNDPVLVEAF 729 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 N +DI+ T K ++ + V+ R K++ ++ Y G +K Sbjct: 730 KNNDDIHRKTAMKIYSVSKEHVTPSMRNTAKIINFSIIYGKTAFGLSKELNISRKEADDF 789 Query: 459 LQQFSQNVKSTSTFEDW----------------------EQAESHHLWMQDQYPEFAVKD 496 ++ + F + + S + ++++ A+ Sbjct: 790 IKGYFSTYSQVKPFCEKVIEDVKAKGYVRTMLGRIRDLSKTINSSNAVVRNEAERMALNT 849 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 + G+A +++K A A H+ V+Q+ +L + + + + Sbjct: 850 LIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKEIME 908 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 7/61 (11%) Query: 598 TENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIVSETPDTPYFSVGTL-CSL 650 ++Q + D++ M K IV+ VHDE+V E + T+ + Sbjct: 847 LNTLIQGSAADMIKVAMIAIHKEFKNHFKTAKIVMQVHDELVVEVSEKESDKAMTIMKEI 906 Query: 651 M 651 M Sbjct: 907 M 907 >gi|325570069|ref|ZP_08145994.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] gi|325156897|gb|EGC69068.1| DNA-directed DNA polymerase I [Enterococcus casseliflavus ATCC 12755] Length = 881 Score = 222 bits (566), Expect = 2e-55, Method: Composition-based stats. Identities = 69/495 (13%), Positives = 151/495 (30%), Gaps = 83/495 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 +L+DE +++ + + K +LA + Sbjct: 361 FTDWLKDEKRKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYLLDTN--DTNNDIA 415 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H KG+ P D F + R V A L + Sbjct: 416 GVAAHYGYDAIQSDEAIY-GKGAKKGLPADEED---------FFAHLARKVAAITNLTPK 465 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L ++ + G ++D + +++ AQ +++E I Sbjct: 466 LTEELAAKNQTALFEEMELPLSMILAEMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYA 525 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRL 282 + L + LF G+ ++ ++ + + + +D++ R Sbjct: 526 EAGETF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQ 584 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + + L + + DG++ ++TGR S QN+P + Sbjct: 585 IAKIQST-YVEGLLKVIQGDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR--------- 633 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + + +D + IE RVLA I+ + +A Sbjct: 634 ---------------LEEGRKIREAFVPRETDWVIYSSDYSQIELRVLAHISDDTHLKEA 678 Query: 402 FANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 F G+DI+ +T + F + V+ R K + + Y G ++ Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAQ 738 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + + + T+ + S + ++ A+ Sbjct: 739 QYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAIN 798 Query: 496 DKLIGTACELVKKAW 510 + G+A +++K A Sbjct: 799 TPIQGSAADILKIAM 813 >gi|46907796|ref|YP_014185.1| DNA polymerase I [Listeria monocytogenes str. 4b F2365] gi|254824376|ref|ZP_05229377.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|254931505|ref|ZP_05264864.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|255520153|ref|ZP_05387390.1| DNA polymerase I [Listeria monocytogenes FSL J1-175] gi|46881065|gb|AAT04362.1| DNA polymerase I [Listeria monocytogenes serotype 4b str. F2365] gi|293583057|gb|EFF95089.1| DNA polymerase I [Listeria monocytogenes HPB2262] gi|293593611|gb|EFG01372.1| DNA polymerase I [Listeria monocytogenes FSL J1-194] gi|328474918|gb|EGF45718.1| DNA polymerase I [Listeria monocytogenes 220] Length = 875 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 169/502 (33%), Gaps = 62/502 (12%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 T+++A S++ + + V +++ + + I + +LA P Sbjct: 346 FTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNP 402 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S + ++ E + A + KG+ S P + A H+ + ++ Sbjct: 403 SDSIDDFTSVAIRHD---YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKR 459 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + E ++L + D E L + + +G +D + + ++ +A K L+E I Sbjct: 460 LVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHS 519 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L + LF G+ V ++ T +L + D IL Sbjct: 520 LAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 578 Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + L + ++ ++TGR S QN+P + Sbjct: 579 LGKIQSTYIEGLLKVTDKETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR--------- 628 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + S G K+ AD + +E RVLA I+ ++ I A Sbjct: 629 ---------------LEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYA 673 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F + DI+ T F+ D+V R K + + Y G ++ Sbjct: 674 FKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKD 733 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + ++ + + + + S + ++ A+ Sbjct: 734 FIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNT 793 Query: 497 KLIGTACELVKKAWRAKHQGVL 518 + G+A +++KKA + ++ Sbjct: 794 PIQGSAADIIKKAMILMSERLV 815 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M K ++L VHDE++ E P+ + + Sbjct: 795 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847 >gi|29832769|ref|NP_827403.1| DNA polymerase I [Streptomyces avermitilis MA-4680] gi|29609889|dbj|BAC73938.1| putative DNA polymerase I [Streptomyces avermitilis MA-4680] Length = 907 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 84/536 (15%), Positives = 161/536 (30%), Gaps = 78/536 (14%) Query: 54 PSDLLQY--------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 PS L + L D V HN+ + + + + LA Sbjct: 378 PSQLDEADENAFATWLADPAKPKVLHNAK---GVMRVFAEHGWTVEGVSMDTALAAYLVK 434 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 P A AL+ ++E + G+ + D L + +R Sbjct: 435 PGRRSFALDALSLEYLGRELEPAATADGQLAFGADEGAEADALMVQARAILDLGEAFGER 494 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E R D E L + G D + ++++ A ++ ++ Sbjct: 495 LKEVGSADLLR-----DMELPTSALLARLERHGIAADKAHLEAMEQMFAGAVQQAVKEAH 549 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L+ LF G+ ++ + D L + Sbjct: 550 AAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLR 608 Query: 286 GSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 KL L + +++DGR+ T A+ TGR S QN+P + Sbjct: 609 HREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------- 660 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + G + L+ AD + IE RV+A ++ ++ I+ Sbjct: 661 -----------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIE 703 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +GED++ T ++ F V E R K M L Y G ++ A Sbjct: 704 AFTSGEDLHTTVASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEAR 763 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 + + + + E+ + ++ A+ Sbjct: 764 ALMDTYFERFGGVRDYLRRAVDEARATGYTETLFGRRRYLPDLNSDNRQRRETAERMALN 823 Query: 496 DKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA ++VK A + + ++ + + + G + Sbjct: 824 APIQGTAADIVKIAMLNVDRALQEANLKSRMLLQVHDEIVLEIAPGERAKTEELVR 879 >gi|257865986|ref|ZP_05645639.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257872319|ref|ZP_05651972.1| DNA polymerase I [Enterococcus casseliflavus EC10] gi|257799920|gb|EEV28972.1| DNA polymerase I [Enterococcus casseliflavus EC30] gi|257806483|gb|EEV35305.1| DNA polymerase I [Enterococcus casseliflavus EC10] Length = 881 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 69/495 (13%), Positives = 151/495 (30%), Gaps = 83/495 (16%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 +L+DE +++ + + K +LA + Sbjct: 361 FTNWLKDEERKKFVYDAKRTYVALNRY---TTAPKGIAFDVLLAAYLLDTN--DTNNDIA 415 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H KG+ P D F + R V A L + Sbjct: 416 GVAAHYGYDAIQSDEAIY-GKGAKKGLPADEED---------FFAHLARKVAAITNLTPK 465 Query: 177 LIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L + E L ++ + G ++D + +++ AQ +++E I Sbjct: 466 LTEELAAKNQTALFEEMELPLSMILADMEITGIKVDASRLHQMKGEFAQRLHEIEEKIYA 525 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRL 282 + L + LF G+ ++ ++ + + + +D++ R Sbjct: 526 EAGETF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVEDILTYRQ 584 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + + L + + DG++ ++TGR S QN+P + Sbjct: 585 IAKIQST-YVEGLLKVIQGDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR--------- 633 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + + +D + IE RVLA I+ + +A Sbjct: 634 ---------------LEEGRKIREAFVPREADWVIYSSDYSQIELRVLAHISDDTHLKEA 678 Query: 402 FANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 F G+DI+ +T + F + V+ R K + + Y G ++ Sbjct: 679 FIEGQDIHSSTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKAAQ 738 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + + + T+ + S + ++ A+ Sbjct: 739 QYIDTYFEKYPGVKTYMEDVVREAKDKGYVETLYHRRRYLPDINSRNFNIRTFAERTAIN 798 Query: 496 DKLIGTACELVKKAW 510 + G+A +++K A Sbjct: 799 TPIQGSAADILKIAM 813 >gi|206889818|ref|YP_002249284.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741756|gb|ACI20813.1| DNA polymerase I, thermostable [Thermodesulfovibrio yellowstonii DSM 11347] Length = 838 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 86/515 (16%), Positives = 174/515 (33%), Gaps = 95/515 (18%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + ++ + +N+ K + G+ + + ++A P+ K L E Sbjct: 349 ILSSEILKIIYNAKEALKKLKNS-GLKLSPP-YFDLMIVAYLIN-PNRGKYNIDELIL-E 404 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 + K E I + ++L+ + K E E Sbjct: 405 YTGKFYENAENINFY-------------------MFELYEKLNKELKEKELENL-----Y 440 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E L + + + G +++++ + L + I+ E K+ E I + + Sbjct: 441 FDIEMPLIEVLFDMEETGIKVNIEKLETLTKHISMELDKIKEKIYTIAGTEF-NINSPKQ 499 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----L 295 L L+ G+ + + +LA L + + KL T L Sbjct: 500 LAEVLYDRLGLKTRKRGKK--ARSTEMEVLEELAIQHELPHEVINYRTLNKLLTGYLIPL 557 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + ++ + + T + TGR QN+P Sbjct: 558 RDYINPETKRIHTKWSQTVAGTGRIVSSEPNLQNIP------------------------ 593 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 G ++ +R I NG + AD + IE R+LA ++ + IKAF +G+DI+ T ++ Sbjct: 594 VKGEWAEFLREVFIPENGYMFLSADYSQIELRLLAHMSEDPALIKAFLDGKDIHTATASE 653 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+ P + V+ E R I K + + Y G ++ K ++ + Sbjct: 654 IFSIPENAVTDEHRRIAKTVNFGISYGISPFGLSESIKIPYEKAEELIELYFLRYPMVRK 713 Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 F + + S + +++ Q AV ++ GTA +++K A Sbjct: 714 FIEETISFAQKNGYVRTLFGRIRPLPEINSPNQFLRMQSERMAVNARVQGTAADIIKIAM 773 Query: 511 RAKH----------QGVLQLWKDLTEGFACVVQEG 535 + + +LQ+ ++ V E Sbjct: 774 IRIYNRLKKEKLNAKIILQIHDEIVLEVEQKVIEK 808 >gi|329940861|ref|ZP_08290141.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] gi|329300155|gb|EGG44053.1| DNA polymerase I [Streptomyces griseoaurantiacus M045] Length = 906 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 88/538 (16%), Positives = 161/538 (29%), Gaps = 75/538 (13%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D TE L D V HN+ +F + + + LA Sbjct: 376 DPTEVDEEDERAFAAWLADPARPKVLHNAKGAMRVFAEHGW---TIEGVTMDTALAAYLV 432 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P AL ++ A + G+ + D L + Sbjct: 433 KPGRRSFDLDALTLEYLGRELAPPAAADGQLAFGADEEAEADALMVQARAILDLGEAFTG 492 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 R E L D E L + G D + ++++ A ++ + Sbjct: 493 RLKEVGAADL-----LGDMELPTSALLARMERHGIAADRAHLESMEQMFAGAVQQAVREA 547 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + L+ LF G+ ++ + + L + Sbjct: 548 HAAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLAAQTENELPVIML 606 Query: 285 SGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 KL L + +++DGR+ T A+ TGR S QN+P + Sbjct: 607 RHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------ 659 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399 +R + G + L+ AD + IE RV+A ++ + I Sbjct: 660 ------------------DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDAGLI 701 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF +GED++ T ++ F V E R K M L Y G ++ A+ Sbjct: 702 EAFTSGEDLHTTAASQVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAAEA 761 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 ++ + + + E+ + ++ A+ Sbjct: 762 RTLMEAYFERFGGVRDYLRRVVEEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMAL 821 Query: 495 KDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + GTA ++VK A + +LQ+ ++ A +E RR Sbjct: 822 NAPIQGTAADIVKIAMLRVGEALRAAGLASRMLLQVHDEIVLEIAPGERERVEALLRR 879 >gi|116492456|ref|YP_804191.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] gi|116102606|gb|ABJ67749.1| DNA polymerase I [Pediococcus pentosaceus ATCC 25745] Length = 887 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 74/486 (15%), Positives = 155/486 (31%), Gaps = 61/486 (12%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S + L D + +S + + LGI + + + + + + Sbjct: 365 SKIKAILEDPKIKINVFDSKRTYVGLHR-LGIKLTAVNF-DILLQSYLLDT----NDNSN 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L H + + KG+ + P NH+ + + ++ Sbjct: 419 DLGQLAHEHDYDAIDTDDDVYGKGAKRAVPEQTELFNHLARKLAAINFLGKQLDQELVKN 478 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 ++ D E L ++ + G ++D + + ++Q + +++ +I + Sbjct: 479 EQNNLYWDIELPLAIVLAKMEISGIKVDRNRLNQMQSEFTERLSEIETNIYNEAGEEF-N 537 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L + LF + ++ ++ T +L D ILN S Sbjct: 538 LNSPKQLGVVLFEKLKLPIIKKTKTGYSTAVDVLEKLQGESPIIDNILNYRTLSKIKSTY 597 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 ++ L + + + T ++TGR S QN+P Sbjct: 598 VDGLLKVIHTTDEKVHTTYVQTLTQTGRLSSIDPNLQNIP-------------------- 637 Query: 352 TIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R + A G ++ +D + IE RVLA I G+ +AF NGEDI+ Sbjct: 638 ----VRIEEGRKIRQAFVPAREGWHILSSDYSQIELRVLAHITGDQNLQEAFKNGEDIHA 693 Query: 411 TTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 TT K F +V+ R K + + Y G ++ ++ + + Sbjct: 694 TTAVKIFGLKDASEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGISRKDAKKFIETYFKE 753 Query: 466 VKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACE 504 + D + ++ A+ + G+A + Sbjct: 754 FPGVKKYIDESVQLAKEQGYVETIAHRRRYLPDINSSSFNLRSFAERTAMNTPIQGSAAD 813 Query: 505 LVKKAW 510 ++K A Sbjct: 814 IIKIAM 819 Score = 40.9 bits (94), Expect = 0.67, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M + ++L VHDE++ E PD + L Sbjct: 807 IQGSAADIIKIAMIDMENELEKRNLKSRMLLQVHDELIFEVPDEEMTLMKELV 859 >gi|121613724|ref|YP_001000048.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|148926433|ref|ZP_01810116.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] gi|167005004|ref|ZP_02270762.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81-176] gi|87250253|gb|EAQ73211.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81-176] gi|145844596|gb|EDK21702.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8486] Length = 879 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 93/533 (17%), Positives = 183/533 (34%), Gaps = 101/533 (18%) Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 ++ + + V+ HN ++ + + +++ +++ T +LA + LAL Sbjct: 372 IEAIFNHFVI--GHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNMDDLALR 428 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE----- 172 + T E K + + +A +Y D T Sbjct: 429 LFNYETLHFES------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYF 473 Query: 173 LFKRLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L PL + E D + + + G ++D + + L + E K L E+I L Sbjct: 474 LKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLC 533 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILN 280 + + + LF + + T + +L H I ++ L Sbjct: 534 EDRF-NLNSPKQMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELA 592 Query: 281 RLASSG-SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 +L S+ +LKL + R+ + G + TGR S QN+P Sbjct: 593 KLYSTYCEPLLKL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH------ 641 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 G + +SC +A +G + D + IE R+LA + ++ + Sbjct: 642 ------------------GQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLL 683 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 AFAN EDI+ T F + + E R++ K + L Y G ++ K A+ Sbjct: 684 NAFANDEDIHARTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLA 739 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVK 495 ++++ +N S + + + E+ Y ++ Sbjct: 740 KSYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESIN 799 Query: 496 DKLIGTACELVKKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 L G+A +++K A ++ +LQ+ +L + E R Sbjct: 800 SILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDE 631 G Y + ++ M+ Y + +I+Q + D++ M K ++L +HDE Sbjct: 775 GRKRYFDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDE 834 Query: 632 IVSETPDTPYFS-VGTLCSLM 651 ++ E D + V +M Sbjct: 835 LIFEVKDDLCENFVKKTRDIM 855 >gi|184155793|ref|YP_001844133.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] gi|183227137|dbj|BAG27653.1| DNA-directed DNA polymerase I [Lactobacillus fermentum IFO 3956] Length = 886 Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats. Identities = 83/524 (15%), Positives = 166/524 (31%), Gaps = 77/524 (14%) Query: 24 YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 Y E L + D L R + L + L D V N+ + + + Sbjct: 334 YHESP---LAGFVIGDGKRWLVSRNADLLTTAPLKKLLEDPAVERDVFNAKAQLVGLHR- 389 Query: 84 LGIDIPSKRWICTSVLARTN----GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 LG+D+ + +LA + L A ++ + EE + KG+ Sbjct: 390 LGVDLAGVDF--DLLLASYLLNTSENANDLGVLAAAHDY-HQVQTDEEV------YGKGA 440 Query: 140 IDSPPYDCT-RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRG 198 + P D H+ K + ++L D ER L + + G Sbjct: 441 KRAIPADDEVFFTHLAKKARAIRDLKEPLYQQLTDNEQLPLYEDIERPLSAVLAHMEITG 500 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE 258 +D + ++ + + +L++ I + + L + LF + ++ ++ Sbjct: 501 IHVDAATLKEMGSKLVEREAELEQAIYQEAGEEF-NINSPKQLGVILFEKMKLPVIKKTK 559 Query: 259 GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYG 313 + + + +LA + + + I KL + L + + D + T Sbjct: 560 TGYSTAVD--VLEKLADRAPIVQDILAYRQISKLQSTYITGLLKVIHQDDQKIHTRYLQT 617 Query: 314 ASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-N 372 + TGR S QN+P +R S Sbjct: 618 LTATGRLSSVDPNLQNIP------------------------VRLEEGRQIRRAFTPSAP 653 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAI 431 G K+ +D + +E RVLA + G+ F G+DI+ T + F+ D+V+ R Sbjct: 654 GWKIFSSDYSQVELRVLAHVTGDKNMQADFLAGKDIHAATAKRIFHLQSEDEVTPNMRRQ 713 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF--------------- 472 K + + Y G A+ +Q + + + Sbjct: 714 AKAVNFGIVYGISDYGLAQNIHVSRPQAHEFIQSYFKEFPGVEKYVHDIVELAKQQGYVE 773 Query: 473 ------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + A+ + G+A +++K A Sbjct: 774 TLTHRRRYLPEIHAKSFTQRSFAERMAMNTPIQGSAADIIKIAM 817 >gi|328465601|gb|EGF36830.1| DNA polymerase I [Listeria monocytogenes 1816] Length = 694 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 80/502 (15%), Positives = 169/502 (33%), Gaps = 62/502 (12%) Query: 47 RTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP 106 T+++A S++ + + V +++ + + I + +LA P Sbjct: 165 FTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNR---IGLAISGITFDIMLASYLLNP 221 Query: 107 SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 S + ++ E + A + KG+ S P + A H+ + ++ Sbjct: 222 SDSIDDFTSVAIRHD---YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKR 278 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + E ++L + D E L + + +G +D + + ++ +A K L+E I Sbjct: 279 LVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAGRLKTLEESIHS 338 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLA 283 L + L + LF G+ V ++ T +L + D IL Sbjct: 339 LAGEEF-NINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQ 397 Query: 284 SSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + L + ++ ++TGR S QN+P + Sbjct: 398 LGKIQSTYIEGLLKVTDKETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR--------- 447 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + S G K+ AD + +E RVLA I+ ++ I A Sbjct: 448 ---------------LEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYA 492 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F + DI+ T F+ D+V R K + + Y G ++ Sbjct: 493 FKHDYDIHTKTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKD 552 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + ++ + + + + S + ++ A+ Sbjct: 553 FIDRYFVSYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNT 612 Query: 497 KLIGTACELVKKAWRAKHQGVL 518 + G+A +++KKA + ++ Sbjct: 613 PIQGSAADIIKKAMILMSERLV 634 Score = 44.0 bits (102), Expect = 0.076, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M K ++L VHDE++ E P+ + + Sbjct: 614 IQGSAADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIV 666 >gi|146296993|ref|YP_001180764.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|38146975|gb|AAR11872.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410569|gb|ABP67573.1| DNA polymerase I [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 849 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 67/384 (17%), Positives = 135/384 (35%), Gaps = 65/384 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + + G++++ + + + + I + KL+ I ++ + Sbjct: 448 YENIEIPLVPILYEMEKIGFKVNKNTLQEYTKEIESKLLKLETQIYQIAGEWF-NINSPK 506 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + +V ++ T +L LIL+ + L Sbjct: 507 QLSYVLFEKLKLPVVKKTKTGYSTDAEVLEELYDKHEIVPLILDYRMYTKILTTYCQGLM 566 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +A++S GR+ G + TGR + QN+P + Sbjct: 567 QAINSVTGRVHSNFIQTG-TATGRLASAESNLQNIPVKY--------------------- 604 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R I G L+ AD + IE R+LA I+ ++ I AF N DI+ T A+ Sbjct: 605 ---DEGRLIRKAFIPEEGYVLIDADYSQIELRILAHISEDERLINAFKNNLDIHSQTAAE 661 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F + +V+ R+ K + + Y G +K K + ++ + Sbjct: 662 IFGVDVSQVTPTMRSQAKAVNFGIIYGISDYGLSKDIKISRKEAAEFINRYFEKYPKVKE 721 Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D + +S + +++ A+ + G+A +++K A Sbjct: 722 YLDNVVKFARENGFVLTLFNRKRYIKDIKSTNKNLRNYAERIAMNSPIQGSAADIMKIAM 781 Query: 511 RA----------KHQGVLQLWKDL 524 K + +LQ+ +L Sbjct: 782 IRVYRRLKEENLKSRIILQVHDEL 805 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 40/127 (31%), Gaps = 10/127 (7%) Query: 530 CVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMR 589 + ++ + R V V + L + K Y+ S Sbjct: 699 KISRKEAAEFINRYFEKYPKVKEYLDNVVKFARENGFVLTLFNRK---RYIKDIKSTNKN 755 Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYF 642 R Y ++ N +Q + DI+ M I+L VHDE++ E+P Sbjct: 756 LRNYAERIAMNSPIQGSAADIMKIAMIRVYRRLKEENLKSRIILQVHDELLIESPYEEKE 815 Query: 643 SVGTLCS 649 V + Sbjct: 816 IVKEIVK 822 >gi|312898329|ref|ZP_07757719.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] gi|310620248|gb|EFQ03818.1| DNA-directed DNA polymerase [Megasphaera micronuciformis F0359] Length = 857 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 139/397 (35%), Gaps = 76/397 (19%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + G+ ++ D + +++ +++E L+ +I L + T L Sbjct: 458 IESPLERTLAVMELNGFTVNRDRLEEMKADLSREADALETEIYDLAGESF-NINSTKQLG 516 Query: 243 MYLFLITGIDLVDMSE-------GTLKSILSHSN-ITQLAKDLILNRLASSGSAILKLNT 294 + LF G+ ++ ++ L+ + S + ++ K L +L S+ L+ Sbjct: 517 VILFEKMGLPVIKKTKTGYSTDSSVLEELAEQSEIVPKILKFRALKKLISTY-----LDG 571 Query: 295 LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + R+ + + TGR S QN+P + Sbjct: 572 LEPLIDEKTERVYTSFN-QMVTATGRLSSSDPNLQNIPIRT------------------- 611 Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +RS + G LV D + IE R+LA ++ + I F + +DI+ T Sbjct: 612 -----EQGRKIRSFFVPGEGYDYLVSGDYSQIELRLLAHLSQDPTMIDGFKHNQDIHRRT 666 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 ++ F P D+V+ E R+ K + + Y G ++ + ++ + + Sbjct: 667 ASEVFGVPFDEVTGELRSHAKAVNFGIIYGISDFGLSRNLGITRNRAKEYIESYFARYST 726 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + + S + + A+ + G+A +++K Sbjct: 727 IHDYMNGLVEEARRTGESRTMFGRLRTLPEISSKNFMRRSFAERTAMNTPIQGSAADIIK 786 Query: 508 KAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 A A + ++Q+ +L +E Sbjct: 787 LAMNAVQKKLEALNLHSRMLVQVHDELVLEVPAQEKE 823 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKNGYDIVLT------VHDEIVSETPDTPYFSVGT-LCSLMTKN 654 +Q + DI+ M K + L VHDE+V E P ++ L M + Sbjct: 777 IQGSAADIIKLAMNAVQKKLEALNLHSRMLVQVHDELVLEVPAQEKETIEKLLKETMEEV 836 Query: 655 PSWAKGLPLKAE 666 + +PL A+ Sbjct: 837 VT--LSVPLIAD 846 >gi|299535474|ref|ZP_07048796.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] gi|298729235|gb|EFI69788.1| DNA polymerase I [Lysinibacillus fusiformis ZC1] Length = 875 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 74/485 (15%), Positives = 154/485 (31%), Gaps = 60/485 (12%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L ++L D T + +S + K+ GI + + +LA P+ + Sbjct: 354 DTLRRWLEDATKIKYMSDSKAAQASLKRA-GIQLAGVDF--DLLLASYINNPALSGDDIA 410 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L + L + KG+ + P A HV + +EA + Sbjct: 411 TL--ARELGYYDVQADEAVY-GKGAKRAIPDLDQLAQHVSRKAFAVWSLQPKLEALLKDN 467 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 ++ + E L + + G ++ + K+ + + + ++++I + Sbjct: 468 EQFDLYKNLELPLAGILGEMESEGITVNRATLEKMGQELNDKLVVIEQEIYAEAGETF-N 526 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L + LF G+ ++ ++ T +L + IL Sbjct: 527 INSPKQLGVILFDKLGLPVIKKTKTGYSTAADVLEKLQSEHAIIEHILLYRQLGKLQSTY 586 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L + + T + TGR S QN+P + Sbjct: 587 IEGLLKEIHESNSKVHTRFQQALTATGRLSSTDPNLQNIPIR------------------ 628 Query: 352 TIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R + S L AD + IE RVLA ++ + ++AF G D++ Sbjct: 629 ------LEEGRKIRQAFVPSKEDWILFSADYSQIELRVLAHMSEDQNLVEAFREGMDVHT 682 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 T F+ D+V R K + + Y G ++ ++++ + Sbjct: 683 RTAMDVFHVSEDEVDSNMRRAAKAVNFGIVYGISDYGLSQNLDITRKEAANFIEKYFASF 742 Query: 467 KSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + D S + ++ A+ + G+A ++ Sbjct: 743 PGVKQYMDDIVQNAKFNGYVTTILNRRRYLPDITSSNFNLRSFAERTAMNTPIQGSAADI 802 Query: 506 VKKAW 510 +KKA Sbjct: 803 IKKAM 807 >gi|306832348|ref|ZP_07465502.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425787|gb|EFM28905.1| DNA-directed DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 878 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 81/573 (14%), Positives = 177/573 (30%), Gaps = 78/573 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW ++ ++ T + DL + + + F+R + LG+D+P+ Sbjct: 336 IIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSKVLLSHLGVDLPA 390 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + S LA+ + A + KG + P Sbjct: 391 PAF--DSRLAKYLLSTVDDNELSTIARLYTDYVLDSD----EAVYGKGVKRAVPKKAVLL 444 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +H+ + + ++ + ++ L D E+ L + + G + + +++ Sbjct: 445 SHLARKIVVLNHSEKVMLDKLTEHQQASLLFDMEQPLANVLAKMEIAGISVKKATLQEME 504 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 +L ++I L + L LF + + + + Sbjct: 505 ASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVL 563 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + DG++ ++TGR S Sbjct: 564 ERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTRY-LQDLTQTGRLSSVDP 622 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P +R + + L+ +D + I Sbjct: 623 NLQNIP------------------------VRLEQGRLIRKAFVPETEDEVLLSSDYSQI 658 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442 E RVLA I+ ++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 659 ELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGIVYGI 718 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQA 478 G A ++ + + + + Sbjct: 719 SDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRRELPDI 778 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 S + ++ A+ + G+A +++K A + ++ + + Sbjct: 779 NSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVD--------GQFKTKMLLQV 830 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + VP+ + K V + S+ L Sbjct: 831 HDEIILQVPKNELEAVKTLVKETMESAIDLSVP 863 >gi|329121315|ref|ZP_08249941.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] gi|327469724|gb|EGF15190.1| DNA-directed DNA polymerase I [Dialister micraerophilus DSM 19965] Length = 857 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 71/396 (17%), Positives = 139/396 (35%), Gaps = 71/396 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E+ L + + G ID + K+++ + ++ +KL +I + + L Sbjct: 457 EVEQPLIEVLAEMEKNGISIDEENWKKVRKNMKEKEEKLLLEIYREAGEEF-NVNSPKQL 515 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-NTLSEAVS 300 LF G+ ++ + + LA D + + KL +T +A+ Sbjct: 516 SHILFDKMGMPTGKKTK--TGYSTAADVLENLAIDYPFVKNILEYRTLAKLISTYLDAIP 573 Query: 301 -----SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 R+ + + TGR S QN+P + Sbjct: 574 LLVRKETKRVHTSFN-QMVTATGRLSSSDPNLQNIPVRT--------------------- 611 Query: 356 PLGLASDCVRSCIIASNGKKL-VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +RS + G + +D + +E RVLA ++G++ I+AF N EDI+ T + Sbjct: 612 ---EEGKVIRSLFVPGEGYDFFISSDYSQVELRVLAHMSGDEGLIRAFENKEDIHRRTAS 668 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F P ++V+ EQR+ K + + Y G +K ++ + + Sbjct: 669 EVFGVPFEEVTSEQRSHAKAVNFGIIYGISDFGLSKQLGISRKKADEYIKTYLKRYPGIH 728 Query: 471 TFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 F D S + + A+ + G+A +++K A Sbjct: 729 EFMKKMTEEARKTGKVKTLFGRYRDLPDINSKNFQRRSFAERTAMNTPIQGSAADIMKIA 788 Query: 510 WRA----------KHQGVLQLWKDLT-EGFACVVQE 534 K + +LQ+ +L E V+E Sbjct: 789 MIQVYGKMKKGKYKSRILLQVHDELVIEAVKEEVEE 824 >gi|301300333|ref|ZP_07206538.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852069|gb|EFK79748.1| DNA-directed DNA polymerase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 416 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 61/374 (16%), Positives = 124/374 (33%), Gaps = 57/374 (15%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E ++L + ER L ++ + G ++D + + +Q + + +L+++I Sbjct: 3 ELEENQQLDLYTKIERPLSIVLANMEIAGVKVDSNRLETMQSELKERLSELEQEIYNEAG 62 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSG 286 + L + LF + ++ ++ T +L D IL + Sbjct: 63 EEF-NLNSPKQLGVILFEKLKLPVIKKTKTGYSTAVGVLEQLRGMSPIVDNILQYRQLAK 121 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + L + VS DG+ + TGR S QN+P Sbjct: 122 IQSTYIEGLLKVVSKKDGKAHTRYT-QTLTSTGRLSSVDPNLQNIP-------------- 166 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S G ++ +D + IE RVLA I+ + +AF Sbjct: 167 ----------VRLEEGRKIRQAFVPSHPGWEIFSSDYSQIELRVLAHISKDKNMQEAFKE 216 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ +T + FN D+V+ R K + + Y G ++ + Sbjct: 217 GMDIHASTAMRIFNVDSPDEVTPNMRRQAKAVNFGIVYGISDYGLSQNIGISRKQAKQFI 276 Query: 460 QQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKL 498 + + + +S + ++ A+ + Sbjct: 277 DTYLDTFSGVKDYMEKIVEFAKENGYVETIFNRRRYLPDIKSRNFNLRSFAERTAMNSPI 336 Query: 499 IGTACELVKKAWRA 512 G+A +++K A Sbjct: 337 QGSAADIIKVAMIN 350 >gi|254820981|ref|ZP_05225982.1| DNA polymerase I [Mycobacterium intracellulare ATCC 13950] Length = 908 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 103/576 (17%), Positives = 180/576 (31%), Gaps = 90/576 (15%) Query: 16 LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNS 73 L VG AY A A D + D L L D H + Sbjct: 345 LAVVGTHLAYDADATALAIVSA--DGEGRYIDTATLDPEDEAALASWLADPGPPKALHEA 402 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKAL 131 + G + LA P S L+L + E Sbjct: 403 K---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLR-RELRAENPEQ 458 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 D + ++A + D E R L LS E + + Sbjct: 459 QQLSLLDDTDGTDDQAVQTLLLRAVAVLDLADALDEELARINSTSL--LSGMELPVQRVL 516 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + + G +DL+L+ +LQ A + E + I + L+ LF + Sbjct: 517 AGMENAGIAVDLELLTELQSDFAHLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELEM 575 Query: 252 DLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 ++ H + L RL + ++ L +V+S Sbjct: 576 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT------VDGLLNSVAS 629 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T A+ TGR S QN+P + + Sbjct: 630 DGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------------------G 664 Query: 362 DCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + +G +L+ AD + IE R++A ++ ++ I+AF GED++ ++AF P Sbjct: 665 RRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSKDEGLIEAFNTGEDLHSFVASRAFGVP 724 Query: 421 IDKVSKEQRAIGKVMELALGYQ---GGAKV-FKTMASHCGLDLQQFSQNVKSTSTF---- 472 I++V+ E R K M L Y G K ++Q+ + Sbjct: 725 IEEVTAELRRRVKAMSYGLAYGLSAYGLSAQLKISTEEAKDQMEQYFARFGGVRDYLMAV 784 Query: 473 -----------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + +S + +++ A+ + G+A +++K A + Sbjct: 785 VEQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIETDK 844 Query: 516 GV----------LQLWKDLTEGFACVVQEGGSISAR 541 + LQ+ +L A +E AR Sbjct: 845 AIKDAGLSSRILLQVHDELLFEVAAGEREQLEALAR 880 Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K G I+L VHDE++ E + L Sbjct: 827 IQGSAADIIKVAMIETDKAIKDAGLSSRILLQVHDELLFEVAAGEREQLEALAR 880 >gi|288906293|ref|YP_003431515.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325979307|ref|YP_004289023.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733019|emb|CBI14600.1| DNA polymerase I [Streptococcus gallolyticus UCN34] gi|325179235|emb|CBZ49279.1| DNA polymerase I [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 878 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 77/524 (14%), Positives = 162/524 (30%), Gaps = 76/524 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW ++ ++ T + DL + + + F+R + LG+D+P+ Sbjct: 336 IIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSKVLLSHLGVDLPA 390 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + S LA+ + A + KG + P Sbjct: 391 PAF--DSRLAKYLLSTVDDNELSTIARLYTDYVLDSD----EAVYGKGVKRAVPKKAVLL 444 Query: 151 NHVQAWQL---FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +H+ + + E D + L D E+ L + + G + + Sbjct: 445 SHLARKIVVLNYSEKVMLDKLTEHQQASLLF---DMEQPLANVLAKMEIAGISVKKATLQ 501 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 +++ +L ++I L + L LF + + + Sbjct: 502 EMEASNQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAV 560 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +LA + I KL + L + + DG++ ++TGR S Sbjct: 561 DVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILQDGKIHTRY-LQDLTQTGRLSS 619 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P +R + + L+ +D Sbjct: 620 VDPNLQNIP------------------------VRLEQGRLIRKAFVPETEDEVLLSSDY 655 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALG 440 + IE RVLA I+ ++ I AF G DI+ +T + F + V+ R K + + Sbjct: 656 SQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKTEDVTPNDRRNAKAVNFGIV 715 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G A ++ + + + + Sbjct: 716 YGISDYGLANNLGIPRKVAKQYIETYFERYPGIKNYMERVVRDAKDKGYVETLFHRRREL 775 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 S + ++ A+ + G+A +++K A + ++ Sbjct: 776 PDINSRNFNIRQFAERTAINSPIQGSAADILKIAMINLDKALVD 819 >gi|322382878|ref|ZP_08056713.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153147|gb|EFX45602.1| DNA polymerase I-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 908 Score = 221 bits (564), Expect = 2e-55, Method: Composition-based stats. Identities = 82/507 (16%), Positives = 159/507 (31%), Gaps = 86/507 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112 + Q+L D + ++ GI + + +LA P+ L + Sbjct: 387 EPIRQWLSDADKEKWIFDKHRAQLALS-WKGIKLRGVSF--DVLLASYLLDPTESTLTLS 443 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--- 169 +A +S +E F KG+ P + ++ L E R V Sbjct: 444 GVAGKYSVASLPADE-----QVFGKGAKFKLPEEHLLGENLS---LKAERVSRLVPVLKA 495 Query: 170 ------TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +EL+ L E L + + G ++D + + +L I+ + K + + Sbjct: 496 KLEESGMQELYYEL------EHPLAGVLAEMELAGIKVDKESLKQLGTEISDQLKTIMDR 549 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----I 278 I + + L LF + + ++ + +LA I Sbjct: 550 IYEQAGMTF-NINSPKQLGEVLFEKLQLPVQKKTKTG--YSTDAEVLEKLAPYHDIVGDI 606 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L+ + + L + V D T + TGR S QN+P + Sbjct: 607 LHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQYPNLQNIPIR----- 661 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 +R + S G ++ AD + IE RVLA I+G++ Sbjct: 662 -------------------LEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF DI+ T F +V R K + + Y G ++ Sbjct: 703 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 762 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++Q+ + + D + + + ++ Sbjct: 763 EASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERT 822 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +++K A + + Q Sbjct: 823 AMNTPIQGTAADIIKLAMVQMDERLKQ 849 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 111/318 (34%), Gaps = 49/318 (15%) Query: 392 IAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKEQRA-IGKVMELALGYQGGA 445 + + ++ A DI + T AK +T ++ + KE R GKV Y+ Sbjct: 586 YSTDAEVLEKLAPYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTY---YRQTI 642 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 ++S + + + + ++ + Y + ++ + E Sbjct: 643 AATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 702 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN--VPRLVMRRHKRDVHIVLP 563 +K+A+ + D+ V SA+ V V + +++ I Sbjct: 703 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 762 Query: 564 SSRRLV---YSDVKGDCSYLNTATSQLMRERTYGGKLTE-------------NI------ 601 + R + +S +G +Y+++ + + + Y L + N+ Sbjct: 763 EASRFIEQYFSVFRGVRNYMDSIIRE-AKTQGYVTTLLQRRRYLPEINASNYNLRSFAER 821 Query: 602 ------VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ M + ++L VHDE++ E P+ ++ L Sbjct: 822 TAMNTPIQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVP 881 Query: 649 SLMTKNPSWAKGLPLKAE 666 +M + A +PLK E Sbjct: 882 EVMEQAL--ALDVPLKVE 897 >gi|257884459|ref|ZP_05664112.1| DNA polymerase A [Enterococcus faecium 1,231,501] gi|257820297|gb|EEV47445.1| DNA polymerase A [Enterococcus faecium 1,231,501] Length = 881 Score = 221 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 354 SVFENQAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 414 IEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A+ + G+A Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806 Query: 504 ELVKKAWRAKHQGVLQL 520 +++K A + + + Sbjct: 807 DILKIAMIELDKRLKET 823 Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 20/213 (9%) Query: 457 LDLQQFSQ-NVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK-- 513 + +SQ ++ + + E ++ L QD + A++ I A ++ R Sbjct: 653 IYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIHASTAMRVFGIEKAEDVTPNMRRQAKA 712 Query: 514 -HQGVLQLWKDLTEGFACVV-QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR-RLVY 570 + G++ D + ++ V +R V +Y Sbjct: 713 VNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFEKYPGVKEYMERIVREAKDQGYVETLY 772 Query: 571 SDVK--GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDI 624 + D + N +Q + DIL M K + G Sbjct: 773 HRRRYLPDINSRNYNIRSFAERTA-----INTPIQGSAADILKIAMIELDKRLKETGLQA 827 Query: 625 VL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 + VHDE+V E P+ S+ L +M + Sbjct: 828 TMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860 >gi|268679198|ref|YP_003303629.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] gi|268617229|gb|ACZ11594.1| DNA polymerase I [Sulfurospirillum deleyianum DSM 6946] Length = 885 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 91/554 (16%), Positives = 170/554 (30%), Gaps = 106/554 (19%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAM-PSDLLQY 60 D ET + AY A I ++A ++ + + + Sbjct: 326 DTET--------NALDAY--NAKIVGFSFALNEHEAYYVPLAHHYLGVGEQIGMEEAKEA 375 Query: 61 LRDETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF- 118 L+ V N ++ + + G+ + + T ++A S++ LA F Sbjct: 376 LKKLFKHKIVGQNLKYDLAVIENNFGLRLS-SSYADTMLMAWLLNPESNVGLDTLAKRFF 434 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 + + K ++ + F +D EY D T +L+ +L Sbjct: 435 NHDMVKFKDVVSKNENFSHVPLDKA----------------CEYASEDAWMTLKLYNKLH 478 Query: 179 PLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + + E L + G +ID L + L +I L D Sbjct: 479 DMLEPRLLEIAKEVEFPFILTLMRMEKEGIKIDGAYFEALLKRTDGAIDALKHEIFTLCD 538 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + T L LF G+ V ++ + + +L + Sbjct: 539 AQF-NLNSTQQLGTVLFEQLGLPPVKKTK--TGYSTDENVLNELLDKHPSIAKILEYREL 595 Query: 290 LKL-----NTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 KL L + S GR+ + G + TGR S QN+P Sbjct: 596 YKLRSTYIEPLLKLSKESPLGRVHTSFIQTG-TSTGRLSSKDPNLQNIP----------- 643 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 VR +A G L+ D + IE R+LA + ++ +KAF Sbjct: 644 -------------VKTALGREVRGGFVAKEGCVLIGIDYSQIELRLLAHFSNDEAMVKAF 690 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLD 458 +G+DI+ T K F ++ + +R++ K + L Y G K + Sbjct: 691 RDGKDIHYETALKLFG---EQEAASKRSVAKSINFGLLYGMGPKRLSETLGISMAEAKRY 747 Query: 459 LQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKL 498 ++ + + + ++ + Y AV Sbjct: 748 IESYFATFPTIKAYVMEVAEQAKTTGYVETLLGRKRFFDFEHANAMQYAGYLREAVNTVF 807 Query: 499 IGTACELVKKAWRA 512 G+A +L+K + Sbjct: 808 QGSAADLIKLSMNK 821 Score = 37.0 bits (84), Expect = 9.5, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 38/111 (34%), Gaps = 5/111 (4%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGK 596 A+R K V V ++ Y + G + + + M+ Y + Sbjct: 742 AEAKRYIESYFATFPTIKAYVMEVAEQAKTTGYVETLLGRKRFFDFEHANAMQYAGYLRE 801 Query: 597 LTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFS 643 + Q + D++ M ++L +HDE++ E ++ S Sbjct: 802 AVNTVFQGSAADLIKLSMNKIMATLIHDEAKLLLQIHDELIFEVVESQAQS 852 >gi|256830888|ref|YP_003159616.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] gi|256580064|gb|ACU91200.1| DNA polymerase I [Desulfomicrobium baculatum DSM 4028] Length = 861 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 132/386 (34%), Gaps = 69/386 (17%) Query: 186 DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 L + + RG RID ++ E +L I + + R + L L Sbjct: 467 PLTEVLVRMQKRGIRIDAARFHDFLGMVQAELDRLTRTIHEQAGEEF-NIRSSQQLAEVL 525 Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLI-----LNRLASSGSAILKLNTLSEAVS 300 F G+ + G +S S S + LA + L L + + Sbjct: 526 FSRLGLACKQKTPGGAQST-SSSVLEGLAAEHPIVADVLEFRMYEKLRSTYLEPMPQLAD 584 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 +GR+ T A+ TGR S QN+P + G Sbjct: 585 KNGRIHTTFNQL-ATATGRLSSSNPNLQNIPIR------------------------GAL 619 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +RSC +AS G +LV AD + IE RVLA ++G+ +AFA G+DI+ T F+T Sbjct: 620 GPRMRSCFVASPGNRLVAADYSQIELRVLAHMSGDQTLTEAFAAGDDIHARTAGILFDTT 679 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED-- 474 +VS ++R K + L Y G + + + + F + Sbjct: 680 --EVSADERRKAKTINFGLLYGMGPQKLGRELGISLKEAKEFIAVYFSKLSRVREFYEEI 737 Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + S + M Q A+ + G+A +++KKA + Sbjct: 738 EAGAKSLGYVTTLAGRRRMLPEINSRNTNMAQQARRMAINTVVQGSAADIIKKAMLEVDK 797 Query: 516 G----------VLQLWKDLTEGFACV 531 +LQ+ +L Sbjct: 798 SPVIGELGASLILQIHDELLLEAPAA 823 >gi|108804847|ref|YP_644784.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] gi|108766090|gb|ABG04972.1| DNA polymerase I [Rubrobacter xylanophilus DSM 9941] Length = 843 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 72/372 (19%), Positives = 132/372 (35%), Gaps = 55/372 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G +D + ++ I + +L+E I + + L Sbjct: 441 EVELPLADVLAEMERVGMPVDARTLEEVGREIERRIAELEEAIFEDVGHPF-NIGSPKQL 499 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF G+ V ++ T +L + + I+ + + L + Sbjct: 500 SEVLFEELGLPPVRRTKTGYSTDAKVLQQLALEHPIAERIIAWRELAKLKGTYVEGLLKL 559 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 V DGR+ T + TGR S QN+P + + Sbjct: 560 VGEDGRIHTT-LNQTTTATGRISSDSPNLQNIPVRTET---------------------- 596 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R AS G+ LVVAD + IE R+LA ++ E ++AF NGEDI+ T A+ F+ Sbjct: 597 --GMRIRDAFTASPGRLLVVADYSQIELRILAHMSREPALVEAFKNGEDIHTRTAAEVFD 654 Query: 419 TPIDKVSKEQRAIGKVMELAL-----GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + V+ E R K++ + GY ++ + +Q++ + + F Sbjct: 655 VRPESVTPELRRRAKMVNFGILYGISGYGLATRLGNVHPAEADRYIQRYFERHPRVTEFI 714 Query: 474 DWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRA 512 AE+ L A ++ G+A +++K A Sbjct: 715 RKSLAEAEELGYATTLFGRRRYVPELRNKNKNVRKLGERIAFNARVQGSAADIIKVAMVD 774 Query: 513 KHQGVLQLWKDL 524 + L D+ Sbjct: 775 LAPRLGPLGADM 786 Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 7/132 (5%) Query: 527 GFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATS 585 G A + A R R + L + L Y+ G Y+ + Sbjct: 683 GLATRLGNVHPAEADRYIQRYFERHPRVTEFIRKSLAEAEELGYATTLFGRRRYVPELRN 742 Query: 586 QLMRERTYGGKLTENI-VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTP 640 + R G ++ N VQ + DI+ M G D+++ VHDE+V + Sbjct: 743 KNKNVRKLGERIAFNARVQGSAADIIKVAMVDLAPRLGPLGADMLMQVHDELVFDVDRDR 802 Query: 641 YFSVGTL-CSLM 651 V L M Sbjct: 803 VEEVAALAAERM 814 >gi|290961250|ref|YP_003492432.1| DNA polymerase I [Streptomyces scabiei 87.22] gi|260650776|emb|CBG73893.1| DNA polymerase I [Streptomyces scabiei 87.22] Length = 908 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 83/522 (15%), Positives = 157/522 (30%), Gaps = 74/522 (14%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D V HN+ +F + + + LA P AL Sbjct: 394 LADPARPKVFHNAKSAMRVFAEHGW---TVEGVGMDTALAAYLVKPGRRSFDLDALTLEY 450 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 ++ + G+ + D L + +R E R Sbjct: 451 LGRELAPAATADGQLAFGADEGAEADALMVQARAILDLGAAFGERLEEVGAAGLLR---- 506 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E L + G D + ++++ A ++ ++ + Sbjct: 507 -DVELPTSALLARMERHGIAADRPHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQ 564 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLS 296 L+ LF G+ ++ + D L + KL L Sbjct: 565 LQEVLFGELGLPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTVEGLI 624 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + +++DGR+ + A+ TGR S QN+P + Sbjct: 625 KTIAADGRIHTSFSQTVAA-TGRLSSTDPNLQNVPVRT---------------------- 661 Query: 357 LGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T A+ Sbjct: 662 --DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQ 719 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F V E R K M L Y G ++ A + + + Sbjct: 720 VFGVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARALIDAYFERFGGVRD 779 Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + E+ + ++ A+ + GTA ++VK A Sbjct: 780 YLRRVVDEARETGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAM 839 Query: 511 RA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + +LQ+ ++ A ++ R Sbjct: 840 LNVGRALDEAGLASRMLLQVHDEIVLEIAPGERDRTEQLLRH 881 >gi|167464951|ref|ZP_02330040.1| DNA polymerase I [Paenibacillus larvae subsp. larvae BRL-230010] Length = 884 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 82/507 (16%), Positives = 159/507 (31%), Gaps = 86/507 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS--LKNA 112 + Q+L D + ++ GI + + +LA P+ L + Sbjct: 363 EPIRQWLSDADKEKWIFDKHRAQLALS-WKGIKLRGVSF--DVLLASYLLDPTESTLTLS 419 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--- 169 +A +S +E F KG+ P + ++ L E R V Sbjct: 420 GVAGKYSVASLPADE-----QVFGKGAKFKLPEEHLLGENLS---LKAERVSRLVPVLKA 471 Query: 170 ------TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +EL+ L E L + + G ++D + + +L I+ + K + + Sbjct: 472 KLEESGMQELYYEL------EHPLAGVLAEMELAGIKVDKESLKQLGTEISDQLKTIMDR 525 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----I 278 I + + L LF + + ++ + +LA I Sbjct: 526 IYEQAGMTF-NINSPKQLGEVLFEKLQLPVQKKTKTG--YSTDAEVLEKLAPYHDIVGDI 582 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L+ + + L + V D T + TGR S QN+P + Sbjct: 583 LHYRTLAKLQSTYVEGLLKEVRPDTGKVHTYYRQTIAATGRLSSQYPNLQNIPIR----- 637 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDW 397 +R + S G ++ AD + IE RVLA I+G++ Sbjct: 638 -------------------LEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 678 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF DI+ T F +V R K + + Y G ++ Sbjct: 679 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 738 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++Q+ + + D + + + ++ Sbjct: 739 EASRFIEQYFSVFRGVRNYMDSIIREAKTQGYVTTLLQRRRYLPEINASNYNLRSFAERT 798 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA +++K A + + Q Sbjct: 799 AMNTPIQGTAADIIKLAMVQMDERLKQ 825 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 111/318 (34%), Gaps = 49/318 (15%) Query: 392 IAGEDWKIKAFANGEDI-----YVTTYAKAFNTPIDKVSKEQRA-IGKVMELALGYQGGA 445 + + ++ A DI + T AK +T ++ + KE R GKV Y+ Sbjct: 562 YSTDAEVLEKLAPYHDIVGDILHYRTLAKLQSTYVEGLLKEVRPDTGKVHTY---YRQTI 618 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 ++S + + + + ++ + Y + ++ + E Sbjct: 619 AATGRLSSQYPNLQNIPIRLEEGRKIRKVFVPSKPGWHILAADYSQIELRVLAHISGDEK 678 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN--VPRLVMRRHKRDVHIVLP 563 +K+A+ + D+ V SA+ V V + +++ I Sbjct: 679 LKEAFVKDMDIHTKTAMDVFGVSEAEVDANMRRSAKAVNFGIVYGISDYGLSQNLGITRK 738 Query: 564 SSRRLV---YSDVKGDCSYLNTATSQLMRERTYGGKLTE-------------NI------ 601 + R + +S +G +Y+++ + + + Y L + N+ Sbjct: 739 EASRFIEQYFSVFRGVRNYMDSIIRE-AKTQGYVTTLLQRRRYLPEINASNYNLRSFAER 797 Query: 602 ------VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLC- 648 +Q + DI+ M + ++L VHDE++ E P+ ++ L Sbjct: 798 TAMNTPIQGTAADIIKLAMVQMDERLKQEKLKSTMLLQVHDELIFEVPEDELETIKKLVP 857 Query: 649 SLMTKNPSWAKGLPLKAE 666 +M + A +PLK E Sbjct: 858 EVMEQAL--ALDVPLKVE 873 >gi|311031365|ref|ZP_07709455.1| DNA polymerase I [Bacillus sp. m3-13] Length = 877 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 80/495 (16%), Positives = 167/495 (33%), Gaps = 66/495 (13%) Query: 48 TEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 TE + + + D ++ + K GI++ + N + Sbjct: 349 TEVALQSEEFAAFASDHKRKKTVFDAKRAIVALK-WKGIELNGIDFDFIIASYIVNPSET 407 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 S A +A + + +E A + KG+ + P A+H+ + K Sbjct: 408 STDLAEIARKKGYYQIETDE-----AVYGKGAKRAVPDQQKVADHLVRKTFAMQEMKESF 462 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++L + E L L+ + G ++D + ++ + ++ +K++E I L Sbjct: 463 IHELKDNEQLELFEELEMPLTLVLGEMEALGIKVDKARLEEMGTDLGEKLEKIEEKIFDL 522 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF G+ V ++ S + +LA+ + + Sbjct: 523 AGEKF-NINSPKQLGVILFEKLGLPPVKKTKTG--YSTSADVLEKLAEKHEVIQQILHYR 579 Query: 288 AILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L + + D ++ ++TGR S QN+P Sbjct: 580 QLGKLKSTYIEGLLKVIHEDSNKIHTRFN-QALTQTGRLSSIDPNLQNIP---------- 628 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I S + AD + IE RVLA IA ++ I+ Sbjct: 629 --------------VRLEEGRKIREAFIPSHEDWVIFAADYSQIELRVLAHIANDEKLIE 674 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF DI+ T F+ D+V+ R K + + Y G ++ Sbjct: 675 AFKEDADIHTKTAMDVFHVSEDEVTSNMRRQAKAVNFGIVYGISDYGLSQSLGITRKDAK 734 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + ++ ++ + + + S + ++ A+ Sbjct: 735 TFIDRYLESFPGVKEYMEDSVLDAKDKGYVTTLLHRRRYLPEITSSNFNLRSFAERTAMN 794 Query: 496 DKLIGTACELVKKAW 510 + G+A +++KKA Sbjct: 795 TPIQGSAADIIKKAM 809 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 7/62 (11%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ + M + ++L VHDE+V E P + + +M + Sbjct: 797 IQGSAADIIKKAMIDMANRLEEENMKSKVLLQVHDELVFEAPKDEIEKLKKIVPEVMEQA 856 Query: 655 PS 656 Sbjct: 857 VE 858 >gi|168333372|ref|ZP_02691652.1| DNA polymerase I [Epulopiscium sp. 'N.t. morphotype B'] Length = 865 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 93/562 (16%), Positives = 180/562 (32%), Gaps = 88/562 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS----SLKNA 112 + + + + + HNS R + + I I + +A P L A Sbjct: 351 VKNFFEAKNISKILHNSKDLRHILYRY---QINIHGNIFDTAIASYLINPLQSDYELSVA 407 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 + + GK I S RA+ W L K +A+ Sbjct: 408 ATGYDIKHVDQLLGTGKNKITWASLASXIIVAQLGARASA--MWTLQTAQLKELTDASM- 464 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L D E L + + G +D + + + L++DI L D Sbjct: 465 ----LDLFYDIEMPLIEVLFDMEIAGITVDAAFLTAFGKKLDALIATLEQDIYSLADEKF 520 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 S L + LF GI ++ + + + +L ++ KL Sbjct: 521 NISSS-KQLGLILFDKLGIPAGKKTK--TGYSTAANILDKLKDKYVIVAKVLEYRQYKKL 577 Query: 293 NT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L + + + +L T + TGR S QN+P + Sbjct: 578 HSTYVVGLLKLLDKNNKLHSTFN-QTVTATGRISSAEPNLQNIPIR-------------- 622 Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R I S + + AD + IE RVLA ++ + +AF G Sbjct: 623 ----------LALGKEIRRAFIPSNDDYVFLDADYSQIELRVLASLSADANMQRAFLEGI 672 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQF 462 DI+ +T ++ F D V++ QR K + + Y A + ++ + Sbjct: 673 DIHTSTASEVFGV--DTVTQAQRNAAKAVNFGVVYGISAFSLADDIQVSNQEATEYIENY 730 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + D + S + ++ A+ + GT Sbjct: 731 FAKYPNVKHYLDSLITTSQATGYGVTLLNRKRNIVELFSSNFNTKEYGKRIAMNMPIQGT 790 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A +++KKA +Q+ L + ++ ++ + V + + + + Sbjct: 791 AADIIKKAM-------IQVHNALKGTRSTLIL---TVHDELLLEVHKSEIEHITKLLKTE 840 Query: 562 LPSSRRLVYS---DVKGDCSYL 580 + S+ +L DVK S+ Sbjct: 841 MESAVKLAVPLLVDVKSGXSWF 862 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 593 YGGKLTENI-VQAISRDILCEGMKNATKN--GYD--IVLTVHDEIVSETPDTPYFSVGTL 647 YG ++ N+ +Q + DI+ + M G ++LTVHDE++ E + + + Sbjct: 777 YGKRIAMNMPIQGTAADIIKKAMIQVHNALKGTRSTLILTVHDELLLEVHKSE---IEHI 833 Query: 648 CSLM 651 L+ Sbjct: 834 TKLL 837 >gi|257898348|ref|ZP_05678001.1| DNA polymerase A [Enterococcus faecium Com15] gi|257836260|gb|EEV61334.1| DNA polymerase A [Enterococcus faecium Com15] Length = 881 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 354 SVFENQAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 414 IEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A+ + G+A Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806 Query: 504 ELVKKAWRAKHQGVLQL 520 +++K A + + + Sbjct: 807 DILKIAMIELDKRLKET 823 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K + G + VHDE+V E P+ S+ L +M + Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKKVMEQA 860 >gi|68535893|ref|YP_250598.1| DNA polymerase I [Corynebacterium jeikeium K411] gi|68263492|emb|CAI36980.1| DNA polymerase I [Corynebacterium jeikeium K411] Length = 859 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 91/519 (17%), Positives = 166/519 (31%), Gaps = 101/519 (19%) Query: 42 VKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA 100 V + D + + L ++L + H S A Sbjct: 341 VIVQDLADVAPKDEKALAEWLANPQATKWLH------------------------DSKKA 376 Query: 101 RTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 +L+N L L+ EH T +L A + + + HV G Sbjct: 377 YH-----TLQNQGLTLDGVEHDT------SLAAYLLRPDVRTLSLADVVQRHVGHELSEG 425 Query: 161 EYCKRDVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +A EL K L P D E L L+ + G +D + +L Sbjct: 426 ATGPERAQAVAELVKALTPEIEAAGQAELYFDLEVPLALILAAMEHAGIAVDDAALQELS 485 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + + +L + L+ LF + ++ + + Sbjct: 486 DDYGARLNEEIAAARELAGEPELNLSSPKQLQKVLFETFDLPKTKKTKTGYSTAAAELEK 545 Query: 271 TQLAKDLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQ 326 + + K ++ L EAV DGR+ T GA+ TGR S Sbjct: 546 LAAQSNHPFLGHLMAHREYQKMKSTIDGLIEAVGDDGRIHTTFNQKGAA-TGRLSSSDPN 604 Query: 327 PQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIE 385 QN+P + A +R+ G L+ AD + IE Sbjct: 605 LQNIPVRT------------------------DAGRKIRAAFTVGEGYETLLTADYSQIE 640 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 RV+A ++ + I+A+A+GED++ ++ F+ P+D+V+ E R K + L Y Sbjct: 641 MRVMAHLSEDAGLIEAYASGEDLHNYVGSRVFDVPVDEVTPELRRRVKALSYGLVYGLSA 700 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G ++ K A + + + + D + S Sbjct: 701 FGLSQQLKISAWEAKRIMDNYFERFGGVKRYLDHVVEVAKETGYTETLYGRRRYLPELNS 760 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + ++ A+ + GTA +++K A + + + Sbjct: 761 SNRVARENAERAALNAPIQGTAADIIKLAMLRVDREITR 799 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP 655 +Q + DI+ M + ++L VHDE+V E + + L+ + Sbjct: 778 IQGTAADIIKLAMLRVDREITRQQLASRVLLQVHDELVVEV---APGELEQITELVEREM 834 Query: 656 SWAKGL--PLK 664 A L PL Sbjct: 835 DAAAQLRVPLD 845 >gi|258512307|ref|YP_003185741.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479033|gb|ACV59352.1| DNA polymerase I [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 895 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 60/389 (15%), Positives = 128/389 (32%), Gaps = 66/389 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T + + + E L + + G+ ++ + ++ + + + K++ ++I L Sbjct: 483 TIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERIKRITQEIYDLAG 542 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNR 281 + L LF G+ + ++ T +L H + ++ +L + Sbjct: 543 TSF-NLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAK 601 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 L S+ + L + + GR+ + TGR S QN+P + Sbjct: 602 LQSTY-----VEGLLKVIRKETGRVHTRF-HQTLTATGRLSSSEPNLQNIPIR------- 648 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + + AD + IE R+LA ++G++ I Sbjct: 649 -----------------LEEGRRLRQVFEPTYKDWVIFAADYSQIELRILAHLSGDEALI 691 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF DI+ T A F P ++V+ R K + + Y G A+ Sbjct: 692 DAFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEA 751 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++ + + + D S + ++ A+ Sbjct: 752 KRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAM 811 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + G+A +L+K A + + D Sbjct: 812 NTPIQGSAADLIKLAMVRIDRAMRDAQMD 840 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 8/119 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A+R KR + ++ +R Y + YL S+ + R++ + Sbjct: 750 EAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERT 809 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 N +Q + D++ M + ++L VHDE++ E P ++ L Sbjct: 810 AMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPKDELAALEVLVR 868 >gi|148242768|ref|YP_001227925.1| DNA polymerase I [Synechococcus sp. RCC307] gi|147851078|emb|CAK28572.1| DNA polymerase I [Synechococcus sp. RCC307] Length = 986 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 87/531 (16%), Positives = 168/531 (31%), Gaps = 116/531 (21%) Query: 48 TEQSAMPSDLLQYLR----DETVMCVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLART 102 E +++L+ L T N+ ++R +L + L ++ + + L Sbjct: 436 AEGQLPLAEVLEALAPWLASPTQRKCLQNAKYDRLVLLRHGLELNGVAVDTLLADYLRDA 495 Query: 103 NGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 + + + A F GK F I + +Y Sbjct: 496 SARHNLEELAQRHYGFRPTSFSDLVGKG--QTFADVPI----------------EAAAQY 537 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQ--------------TINDRGYRIDLDLVLK 208 C DV T L L + E+ L Q + G RID+ + + Sbjct: 538 CGMDVHLTYRLAIDL--VQQLEQLGEALPQLLSELELPLEPVLAQMEATGIRIDVPYLQE 595 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L + + + ++L++ + + L LF G+D + + Sbjct: 596 LGQSMGDKLQQLEQQAIAAAGEEFNLA-SPKQLGELLFNTLGLDRKKSRKTKTGWSTDAA 654 Query: 269 NITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGRWSG 322 + +L + L + KL + L + V S GR+ + TGR S Sbjct: 655 VLEKLEDAHPVVPLVLEHRTLSKLKSTYVDALPQLVESETGRVHTDFN-QAVTATGRLSS 713 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLA 382 QN+P + S +R + L+ AD + Sbjct: 714 SNPNLQNIPVRT------------------------AYSRQIRKAFLPQKDWTLLSADYS 749 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R+L + GE+ ++A+ +G+D++ T + +VS E+R +GK + + Y Sbjct: 750 QIELRILTHLCGEEALVEAYNSGDDVHALTARLLLDKS--EVSDEERRLGKTINFGVIYG 807 Query: 443 GGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA-------------------- 478 GA+ + L ++ Q F +W++ Sbjct: 808 MGAQRFARATGVSQAEAKEFLSRYKQRYPKVFAFLEWQERLALSRGYVETLMGRRRPFHF 867 Query: 479 -------------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + M+ Q A + G++ +++KKA Sbjct: 868 DPQGLGRLKGTDPAEIDLDVARRGGMEAQQLRAAANAPIQGSSADIIKKAM 918 >gi|325290277|ref|YP_004266458.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] gi|324965678|gb|ADY56457.1| DNA polymerase I [Syntrophobotulus glycolicus DSM 8271] Length = 905 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 67/413 (16%), Positives = 143/413 (34%), Gaps = 62/413 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L ++ + +G +D +++ ++ + ++ ++EDI ++ + L Sbjct: 505 ELEEPLSIVLAEMERQGISVDREMLEQIGFELEKKIAVIEEDIYQIAGVSF-NINSPQQL 563 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + + + T L + IL + L Sbjct: 564 GKVLFEQLELPPLKKIKTGYSTDAETLEELAGQHCIVEKILEFRHLVKLNSTYVKGLLGQ 623 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DG++ T Q + TGR S QN+P + Sbjct: 624 L-RDGKVHTTFQ-QMVTATGRLSSTEPNLQNIPIR------------------------M 657 Query: 359 LASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + G +L AD + IE RVLA + + ++F GED++ T ++ F Sbjct: 658 EEGRKLRKVFVPSRGGWELFSADYSQIELRVLAHYSQDPILCQSFQTGEDVHARTASEVF 717 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 P+++V+ + R K + L Y G A+ + ++++ Q + Sbjct: 718 GVPLEQVTPDMRRKAKAVNFGLMYGLTDFGLARDIRIPRKEAKFYIERYFQRYSGVKKYL 777 Query: 474 DWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + + ++ A+ + GTA +++K A Sbjct: 778 NDSVVNAMETGETRTLLNRLRQTPELNHQNRTVRQFGQRIAMNSPIQGTAADIMKLAMIR 837 Query: 513 KHQGVLQLWKDLTEGFACVVQEG--GSISARRVANVPRLVMRRHKRDVHIVLP 563 + + K L V + +SAR + V ++V + + + +P Sbjct: 838 VDEAM----KGLEANLLLQVHDELLLEVSARALPEVAQIVKTEMESALLLTVP 886 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 4/52 (7%) Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + +++L VHDE++ E V + Sbjct: 823 IQGTAADIMKLAMIRVDEAMKGLEANLLLQVHDELLLEVSARALPEVAQIVK 874 >gi|304407962|ref|ZP_07389612.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] gi|304342981|gb|EFM08825.1| DNA polymerase I [Paenibacillus curdlanolyticus YK9] Length = 885 Score = 221 bits (563), Expect = 3e-55, Method: Composition-based stats. Identities = 73/497 (14%), Positives = 147/497 (29%), Gaps = 72/497 (14%) Query: 57 LLQYLRDETVMCVAHNSLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS----SLKN 111 + ++L D + + R GI + + LA P+ S+ Sbjct: 366 VREWLADADMEKAGFDLH--RTELSLAWHGIALKGISF--DIQLAAYLLDPTDSTQSISG 421 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 C + E A+F + + + Sbjct: 422 LCGKYGLP-TVQADESVYGKGAKFKLPEAGVLHGHIASKTDAVRSIAAIQREELEKTGMH 480 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+ L E+ L + + +G R D ++ +L + + + L Sbjct: 481 KLYYDL------EQPLSRVLAGMELQGIRCDASVIEQLGAELESRISDIMTKVYTLAGME 534 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF G+ ++ ++ T +L IL + Sbjct: 535 F-NINSPRQLGEVLFEKLGLPVIKKTKTGYSTDADVLEKLEPYHEIIPSILLFRQLAKLQ 593 Query: 289 ILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + + G++ T + TGR S QN+P + Sbjct: 594 STYVEGLLKEIRPNTGKIH-TYYRQTIAATGRLSSQYPNLQNIPIR-------------- 638 Query: 348 NRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + S G ++ AD + IE RVLA I+G++ +AF Sbjct: 639 ----------LEEGRQIRKAFVPSEPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDL 688 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 DI+ T + F + V R K + + Y G + ++Q+ Sbjct: 689 DIHTKTASDVFGVRPEDVDANMRRQAKAVNFGIVYGISDFGLSNNLNITRKEAAQFIEQY 748 Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501 + + D A++ + ++ A+ + GT Sbjct: 749 FAAFQGVRRYMDNIVAQARTDGYVTTLLERRRYLPEIKASNFNIRSFAERTAMNTPIQGT 808 Query: 502 ACELVKKAWRAKHQGVL 518 A +++K A + + Sbjct: 809 AADIIKLAMVRMDEQLR 825 Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 48/285 (16%), Positives = 92/285 (32%), Gaps = 46/285 (16%) Query: 421 IDKVSKEQR-AIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE 479 ++ + KE R GK+ Y+ ++S +LQ ++ Sbjct: 597 VEGLLKEIRPNTGKIHTY---YRQTIAATGRLSSQY-PNLQNIPIRLEEGRQIRKAFVPS 652 Query: 480 SHHLWM-QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 +M Y + ++ + E +K+A+ + D+ V Sbjct: 653 EPGWFMLAADYSQIELRVLAHISGDEGLKEAFVQDLDIHTKTASDVFGVRPEDVDANMRR 712 Query: 539 SARRVAN--VPRLVMRRHKRDVHIVLPSSRRLV---YSDVKGDCSYLNTATSQLMRERTY 593 A+ V V + +++I + + + ++ +G Y++ +Q R Y Sbjct: 713 QAKAVNFGIVYGISDFGLSNNLNITRKEAAQFIEQYFAAFQGVRRYMDNIVAQ-ARTDGY 771 Query: 594 GGKLTE-------------NI------------VQAISRDILCEGMKN----ATKNGYD- 623 L E NI +Q + DI+ M G Sbjct: 772 VTTLLERRRYLPEIKASNFNIRSFAERTAMNTPIQGTAADIIKLAMVRMDEQLRARGLRS 831 Query: 624 -IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPSWAKGLPLKAE 666 ++L VHDE+V E P + L +M +PLKA+ Sbjct: 832 RMLLQVHDELVFEVPADELELMKELVPQVMESAIK--LDVPLKAD 874 >gi|116333679|ref|YP_795206.1| DNA polymerase I [Lactobacillus brevis ATCC 367] gi|116099026|gb|ABJ64175.1| DNA polymerase I [Lactobacillus brevis ATCC 367] Length = 886 Score = 221 bits (562), Expect = 3e-55, Method: Composition-based stats. Identities = 64/496 (12%), Positives = 151/496 (30%), Gaps = 70/496 (14%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLKN 111 L L + + ++ + ++ + + C +L + L Sbjct: 366 PLKGLLENADIAKQVFDAKRTFVALQR---LAVTLTGVDCDLLLGSYLLNTYDNSNDLGR 422 Query: 112 ACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEAT 170 + + + E+ + KG+ + P D +H+ E + + Sbjct: 423 LAMEHGY-HQVATDEDV------YGKGAKAAIPDDDDVFFSHLARKARAIEQLRPQIFKD 475 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ D E + + + G ++ + + ++ ++++ I Sbjct: 476 LADNEQTDLYRDIELPMAFVLARMEVAGITVEASELEAMGSKFTEQLAEIEQTIYNEAGE 535 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGS 287 + L LF G+ ++ ++ T +L + IL + Sbjct: 536 EF-NIGSPKQLGHILFEKMGLPVIKKTKTGYSTAVGVLEKLAAEAPIAENILKYRKIAKI 594 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + + D + T ++TGR S QN+P Sbjct: 595 QSTYVEGLLKVIHPDDQKVHTRYLQTLTQTGRLSSVDPNLQNIP---------------- 638 Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + S ++ +D + IE RVLA ++ + +AF G+ Sbjct: 639 --------VRNEEGRAIRKAFVPSHPDWEIFSSDYSQIELRVLAHMSHDKQMQEAFREGQ 690 Query: 407 DIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T + F P ++V+ R K + + Y G ++ + Sbjct: 691 DIHAATARRIFKMGPDEEVTPNIRRQAKAVNFGIVYGISDFGLSQNIGISRKQAKAFIDT 750 Query: 462 FSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDKLIG 500 + + + + ++H L + A+ + G Sbjct: 751 YFEEYPGVKAYTERMVQQAHELGYVETIAHRRRYLPDINSRNFNQRSFAERTAMNTPIQG 810 Query: 501 TACELVKKAWRAKHQG 516 +A +++K A Q Sbjct: 811 SAADIIKIAMIRMEQA 826 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 602 VQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 +Q + DI+ M + ++L VHDE++ E P + ++ L S+M Sbjct: 808 IQGSAADIIKIAMIRMEQALKDMQATMLLQVHDELIFEAPASEIDTLAKLVPSVMDSAIE 867 Query: 657 WAKGLPLKAE 666 +PLK E Sbjct: 868 --LEIPLKVE 875 >gi|313887939|ref|ZP_07821618.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846105|gb|EFR33487.1| DNA-directed DNA polymerase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 885 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 92/552 (16%), Positives = 178/552 (32%), Gaps = 98/552 (17%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQYLRDETVMCVAHNSLFERILFKKTL 84 E A D VK + L + + DE V + + SL E I+ L Sbjct: 335 EDVKPIYLAVKVKDSEVKFI---SYEEIDFDFLKKIMEDEKVEKLGY-SLKEDIIILMDL 390 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSID--- 141 GIDI + S + + + K +A F G +D Sbjct: 391 GIDIKNY----------------SHDVEIAEYLLNSTQSDYDINKISMAYFKNGYLDLED 434 Query: 142 -------SPPYDCTRANHVQAWQLF---GEYCKRDVEATRELFKRLIPL-SDGERDLWLL 190 Y + + + F Y D++ + + + L D E L + Sbjct: 435 LLGKGAKKKTYADLDKDDLFKYFAFVLNTIYRLEDLQKEKIDEEEMTSLYQDMELPLVEV 494 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 ++ G D ++ ++ + I ++ K L+E+I + L + LF Sbjct: 495 LASMEYVGINTDEAVLDEIDKQIIEKLKTLEEEIYDEAGEKF-NINSPKQLGVILFDKMD 553 Query: 251 IDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRG 307 ++ ++ T +L D IL+ S ++ L ++ + Sbjct: 554 FPVIKKTKTGYSTSADVLEKLRGKGEIIDKILDYRKFSKLKSTYIDGLKAVINKKTKRIH 613 Query: 308 TLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSC 367 + + TGR S QN+P + +R Sbjct: 614 SRFMQTVTATGRISSTDPNLQNIPIKT------------------------EEGRLIRKA 649 Query: 368 IIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 +AS G LV AD + IE RVLA ++ + + AF +G DI+ T ++ F+ D+V Sbjct: 650 FLASEGGVLVDADYSQIELRVLAALSDDKEMLDAFKHGLDIHRKTASEVFHVDYDEVDDR 709 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------- 473 QR K + + Y G ++ + + + + Sbjct: 710 QRYEAKAVNFGIVYGISDYGLSQNLNIPRKAAKEYIDNYLGHFVGIKDYMAEEIKNGKDK 769 Query: 474 -----------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA---------- 512 + + + ++ A+ + G+A +++K A Sbjct: 770 GYVETIFKRRRYIPELNAKNFNIRSFGERIALNTPIQGSAADIIKIAMVKVYNELKKRNL 829 Query: 513 KHQGVLQLWKDL 524 K + ++Q+ +L Sbjct: 830 KSKLIIQIHDEL 841 Score = 40.9 bits (94), Expect = 0.66, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 10/81 (12%) Query: 578 SYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHD 630 Y+ ++ R++G ++ N +Q + DI+ M +++ +HD Sbjct: 780 RYIPELNAKNFNIRSFGERIALNTPIQGSAADIIKIAMVKVYNELKKRNLKSKLIIQIHD 839 Query: 631 EIVSETPDTPYFSVGTLCSLM 651 E+V +T + + + LM Sbjct: 840 ELVVDTAEDE---IEEVKELM 857 >gi|260887312|ref|ZP_05898575.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|260862948|gb|EEX77448.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 867 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 66/414 (15%), Positives = 137/414 (33%), Gaps = 69/414 (16%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E + L E L + + G +D + + I+ + L +I L G Sbjct: 453 LEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKG 512 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLAS 284 + L LF + ++ T +++ + + + + IL+ Sbjct: 513 EF-NINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEAMRFDHPILEKILSYRFW 571 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L+++ +S R+ + + TGR S QN+P + Sbjct: 572 TKLQSTYLDSMEGLISPRTKRIHTSFN-QTVTATGRLSSSEPNLQNIPVRT--------- 621 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ S+G L+ AD + IE R+LA ++ + ++AF Sbjct: 622 ---------------EEGRQIRALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAF 666 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 +G+DI+ T ++ F P++ V+ + R K + + Y G +K Sbjct: 667 LHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVYGISDYGLSKDLHISRQEAADY 726 Query: 459 LQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDK 497 + + F D +S + + A+ Sbjct: 727 IASYFAKCSGIKRFIDGVVEKAHKDGFVTTIFGRRRDLPAIKSSNYNQRTLAERMAMNTP 786 Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541 + G+A +++K A H+ +LQ+ +L +E + R Sbjct: 787 IQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVR 840 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYF 642 +RT ++ N +Q + DI+ M + G+ I+L VHDE+V E Sbjct: 774 QRTLAERMAMNTPIQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKE 833 Query: 643 SVGTLCS 649 V L Sbjct: 834 QVAELVR 840 >gi|171777578|ref|ZP_02919266.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283187|gb|EDT48611.1| hypothetical protein STRINF_00101 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 884 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 82/576 (14%), Positives = 177/576 (30%), Gaps = 84/576 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW ++ ++ T + DL + + + F+R + LGID+P+ Sbjct: 342 IIGFAWGNDKA-IYASTNLDLLKDDLFKAALAKPIKTY----DFKRSKVLLSHLGIDLPA 396 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + S LA+ + A + KG+ + P Sbjct: 397 PAF--DSRLAKYLLSTVDDNELSTIARLYTEYVLDSD----EAVYGKGAKRAVPDKAVLL 450 Query: 151 NHVQAWQL---FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 +H+ + E D + L D E+ L + + G + + + Sbjct: 451 SHLARKIVVLNHSEKAMLDKLTEHQQASLLF---DMEQPLANVLAKMEIAGISVKKETLQ 507 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 +++ +L ++I L + L LF + + + Sbjct: 508 DMEKANQAVIDELTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAV 566 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSG 322 + +LA + I KL + L + + DG++ ++TGR S Sbjct: 567 DVLERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKDGKIHTRY-LQDLTQTGRLSS 625 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADL 381 QN+P +R + + L+ +D Sbjct: 626 VDPNLQNIP------------------------VRLEQGRLIRKAFVPETADEVLLSSDY 661 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALG 440 + IE RVLA I+ ++ I AF G DI+ +T + F + V+ R K + + Sbjct: 662 SQIELRVLAHISNDEHLIAAFREGADIHTSTAMRVFGIEKAEDVTPNDRRNAKAVNFGIV 721 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------------------- 475 Y G A ++ + + + + Sbjct: 722 YGISDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRREL 781 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 + + ++ A+ + G+A +++K A + ++ + Sbjct: 782 PDINARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVD--------GRFKTKML 833 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + + VP+ + ++ V + S+ L Sbjct: 834 LQVHDEIILEVPKDELEAIEKLVKETMESAIELSVP 869 >gi|330838934|ref|YP_004413514.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] gi|329746698|gb|AEC00055.1| DNA polymerase I [Selenomonas sputigena ATCC 35185] Length = 866 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 66/414 (15%), Positives = 137/414 (33%), Gaps = 69/414 (16%) Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 E + L E L + + G +D + + I+ + L +I L G Sbjct: 452 LEEQQLLSLYETMEFPLVEVLAAMEQAGIYVDRVALHEKSREISAQIAHLTAEIYDLAKG 511 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLAS 284 + L LF + ++ T +++ + + + + IL+ Sbjct: 512 EF-NINSPKQLSAVLFERLDLQPPMGTKKTKTGYSTNAEVLEAMRFDHPILEKILSYRFW 570 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + L+++ +S R+ + + TGR S QN+P + Sbjct: 571 TKLQSTYLDSMEGLISPRTKRIHTSFN-QTVTATGRLSSSEPNLQNIPVRT--------- 620 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R+ S+G L+ AD + IE R+LA ++ + ++AF Sbjct: 621 ---------------EEGRQIRALFEPSDGYDALMSADYSQIELRILAHLSEDKNFLEAF 665 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 +G+DI+ T ++ F P++ V+ + R K + + Y G +K Sbjct: 666 LHGQDIHARTASEVFGVPMEAVTTDLRRKAKAVNFGIVYGISDYGLSKDLHISRQEAADY 725 Query: 459 LQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDK 497 + + F D +S + + A+ Sbjct: 726 IASYFAKCSGIKRFIDGVVEKAHKDGFVTTIFGRRRDLPAIKSSNYNQRTLAERMAMNTP 785 Query: 498 LIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541 + G+A +++K A H+ +LQ+ +L +E + R Sbjct: 786 IQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKEQVAELVR 839 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYF 642 +RT ++ N +Q + DI+ M + G+ I+L VHDE+V E Sbjct: 773 QRTLAERMAMNTPIQGSAADIIKLAMIKTHRALQEGGFKSRILLQVHDELVLEIMQNEKE 832 Query: 643 SVGTLCS 649 V L Sbjct: 833 QVAELVR 839 >gi|227551619|ref|ZP_03981668.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257887242|ref|ZP_05666895.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257895778|ref|ZP_05675431.1| DNA polymerase A [Enterococcus faecium Com12] gi|293377607|ref|ZP_06623796.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] gi|227179296|gb|EEI60268.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257823296|gb|EEV50228.1| DNA polymerase A [Enterococcus faecium 1,141,733] gi|257832343|gb|EEV58764.1| DNA polymerase A [Enterococcus faecium Com12] gi|292643607|gb|EFF61728.1| DNA-directed DNA polymerase [Enterococcus faecium PC4.1] Length = 881 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 67/501 (13%), Positives = 163/501 (32%), Gaps = 83/501 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + D + +++ + + G T G+ + L+ +E Sbjct: 365 ITDPNRLKKVYDAKRTYVALNRYTGK---------------TKGIDFDVLLGAYLLDTNE 409 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA----TRELFKR 176 T +E A S ++ + + +LF + R V A T +L + Sbjct: 410 KSTDIEGIAAHYGYNDIQSDETVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQE 469 Query: 177 LIPLSDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 L + E L ++ + G ++D + +++ + +++++ I + Sbjct: 470 LADKNQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGE 529 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSG 286 + L + LF G+ ++ ++ + + + +D++ R + Sbjct: 530 EF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKI 588 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + + L + + SDG++ ++TGR S QN+P + Sbjct: 589 QST-YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR------------- 633 Query: 347 LNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R + + +D + IE RVLA I+ ++ AF G Sbjct: 634 -----------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEG 682 Query: 406 EDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 +DI+ +T + F + V+ R K + + Y G ++ + Sbjct: 683 QDIHASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYID 742 Query: 461 QFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLI 499 + + + + S + ++ A+ + Sbjct: 743 TYFEKYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQ 802 Query: 500 GTACELVKKAWRAKHQGVLQL 520 G+A +++K A + + + Sbjct: 803 GSAADILKIAMIELDKRLKET 823 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K + G + VHDE+V E P+ S+ L +M + Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860 >gi|260665506|ref|ZP_05866353.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] gi|260560774|gb|EEX26751.1| DNA polymerase I [Lactobacillus jensenii SJ-7A-US] Length = 885 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 77/494 (15%), Positives = 156/494 (31%), Gaps = 74/494 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110 L L D+ V + + + + I + +LA + L Sbjct: 364 QPLQTLLEDQAVNKNVFDLKRTIVGLHR---LGIKANNINYDMLLASYLVNNENNSNDLG 420 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 C N+ + + + KG + P + NH+ L E K + Sbjct: 421 EICQLYNYYDLQPD-------VDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTLLKR 473 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ E + + + G + D +++L Q +L+ DI L G Sbjct: 474 LTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAG 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSG 286 + L LF + + ++ +++ + + + + + ++ R + Sbjct: 533 ERFNINSPKQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKI 592 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + + L + + DGR+ Q + TGR S QN+P Sbjct: 593 QST-YVKGLLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIP--------------- 635 Query: 347 LNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I S +G D + +E RVLA ++G++ +AF Sbjct: 636 ---------VRLEEGKKIRKAFIPSNKDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKT 685 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T K F+ D+V+ R K + + Y G +K + Sbjct: 686 GYDIHAHTAMKIFHLDSPDEVTPNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFI 745 Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498 + + + D E + + ++ A+ + Sbjct: 746 DNYFEQYPKIKDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPI 805 Query: 499 IGTACELVKKAWRA 512 G A +++K A Sbjct: 806 QGGAADIIKIAMIN 819 >gi|123966537|ref|YP_001011618.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] gi|123200903|gb|ABM72511.1| DNA polymerase I [Prochlorococcus marinus str. MIT 9515] Length = 976 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 95/602 (15%), Positives = 184/602 (30%), Gaps = 119/602 (19%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKL--WDRTEQSAMPS------- 55 +D ET S PL A + + +E L QS Sbjct: 384 ALDTETNSLNPL----------DAELVGIGFCLGEESNDLFYIPLGHQSQKDEMNQLAIE 433 Query: 56 ----DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLA---RTNGLPSS 108 +L ++ N F+R +F + ++LA N Sbjct: 434 DVFLNLRTWIESPEKEKTLQNCKFDRQIF---YNHGLNLSGVTFDTLLADYILNNQEKHG 490 Query: 109 LKNAC-LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L C F K GK F + S + ++F E +++ Sbjct: 491 LSEICFREFGFKPPSFKETVGKNKDFSFVDINHASIYCGYDVFLTYKIAKIFKERFRKEK 550 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + +LFK + E L + + G ID+ + +L + ++E++ ++ Sbjct: 551 KELTKLFK------EIELPLEQVLSGMEMSGISIDITYLNELSRELKSTLANIEENVFEI 604 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 S L LF +D + + +L ++ + Sbjct: 605 AKQEFNLS-SPKQLGEILFDKLNLDKKKSRKTKTGWSTDAVVLERLVEEHEIIPYLIKHR 663 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + KL + L ++ GR+ A+ TGR S QN+P + Sbjct: 664 TLSKLLSTYIDALPNLINKKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT------- 715 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 S +R + G KL+ AD + IE R+LA +A E+ I A Sbjct: 716 -----------------EFSRRIRKAFLPEKGWKLLSADYSQIELRILAHLANEEILITA 758 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF----KTMASHCGL 457 F +DI+ T F ++ ++R +GK + + Y G K F + Sbjct: 759 FHQNDDIHSLTARLIFEKK--DINSDERRVGKTINFGVIYGMGIKKFARSTGVSTTEAKE 816 Query: 458 DLQQFSQNVKSTSTFEDWEQ---------------------------------------A 478 L ++ + F + ++ Sbjct: 817 FLIKYKKRYAKIFKFLELQERLALSKGYVETIFGRKREFKFDKNGLGRLIGKEPYEIDLQ 876 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVV 532 + M+ Q A + G++ +++K A ++ + +++ + + V Sbjct: 877 TARKAGMEAQSLRAAANAPIQGSSADIIKIAMVQLNKKLLEMNIPVKMLLQVHDELLFEV 936 Query: 533 QE 534 + Sbjct: 937 KP 938 >gi|222824334|ref|YP_002575908.1| DNA polymerase I [Campylobacter lari RM2100] gi|222539555|gb|ACM64656.1| DNA polymerase I [Campylobacter lari RM2100] Length = 879 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 88/505 (17%), Positives = 168/505 (33%), Gaps = 95/505 (18%) Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 + HN ++ + K + +P K + T +LA + LA ++ T Sbjct: 379 TVIGHNLKYDFEIIKNNFNL-LPPKNYADTMILAWLKEPSLRVNMDVLAKRIFDYETLHF 437 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE--------LFKRLI 178 E K D +A +Y D T L K L+ Sbjct: 438 ED------LVKKGESFAGVDVEKA---------CKYAAEDAYITLRFYLYFLKNLEKSLL 482 Query: 179 PLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L+ E + + + + G ++D+ + L + Q+ K L E I L + Sbjct: 483 ELAQKSEFEFIKVLIMMENNGIKLDIQKLESLMQNFNQDIKILSEKIYDLAGEKF-NINS 541 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----- 292 + LF + S+ + L + ++ + + + KL Sbjct: 542 PKQVGDILFEKLKLPSGKKSK--TGYSTDEKVLNNLIDEHLIIKEILAYRELAKLVGTYC 599 Query: 293 NTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L + D R+ + G + TGR S QN+P Sbjct: 600 EPLLKLAKKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G + ++C +A G + D + IE R+LA + ++ ++AF+N EDI+ Sbjct: 642 -------GQYAKDYKTCFVAKEGFSFISLDYSQIELRMLAHFSEDEKLLEAFSNDEDIHA 694 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T F + + R+I K + L Y G ++ K A ++++ +N Sbjct: 695 KTAIMIFG----ESNYHTRSIAKSINFGLIYGMGYKTLSQNLKIEAKLAKEYIEKYFKNF 750 Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506 S T+ + + E+ Y ++ L G+A +++ Sbjct: 751 TSIKTYFEKVKNEAKQNGFIKTLLGRKRYFDFENAKPMQIAMYERESINSTLQGSAADII 810 Query: 507 KKAWRAK-------HQGVLQLWKDL 524 K A + +LQ+ +L Sbjct: 811 KLAMIKIAKDLDENKRLILQIHDEL 835 Score = 42.4 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631 G Y + ++ M+ Y + + +Q + DI+ M K ++L +HDE Sbjct: 775 GRKRYFDFENAKPMQIAMYERESINSTLQGSAADIIKLAMIKIAKDLDENKRLILQIHDE 834 Query: 632 IVSETPDT 639 ++ E D Sbjct: 835 LIFEVKDE 842 >gi|258616062|ref|ZP_05713832.1| DNA polymerase I [Enterococcus faecium DO] Length = 838 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELAEK 473 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A+ + G+A Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806 Query: 504 ELVKKAWRAKHQGVLQL 520 +++K A + + + Sbjct: 807 DILKIAMIELDKRLKET 823 >gi|163790757|ref|ZP_02185183.1| DNA polymerase I [Carnobacterium sp. AT7] gi|159873937|gb|EDP68015.1| DNA polymerase I [Carnobacterium sp. AT7] Length = 886 Score = 221 bits (562), Expect = 4e-55, Method: Composition-based stats. Identities = 66/445 (14%), Positives = 151/445 (33%), Gaps = 67/445 (15%) Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 LN ++ + E + S +S + + ++ ++ R ++A R L K Sbjct: 409 LNTKDNSKDLSEVAMEHDYYDVSSDESVYGKGAKIAIPEDKKVTYDHVARKIKAIRILSK 468 Query: 176 RLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 +L + E L ++ + G +++ +++++E A +++ + Sbjct: 469 QLSDNLEKNVQTKLFDEMELPLSIVLAEMELTGVKVNDKRLMEMKEEFAIRLNDIEQRVY 528 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 +L + L + LF G +V ++ T +L + IL Sbjct: 529 ELAGEKF-NLNSPKQLGVILFEKMGYPVVKKTKTGYSTAVDVLEQLKEQAPIVEHILEYR 587 Query: 283 ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + L + + G++ ++TGR S QN+P + Sbjct: 588 QIAKIQSTYIEGLLKVIDKETGKIHTRY-MQTIAQTGRLSSVDPNLQNIPIR-------- 638 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + S G K+ +D + IE RVL ++ + + Sbjct: 639 ----------------LEEGRKIRQAFVPSHEGWKIFASDYSQIELRVLGHVSNDKLLKE 682 Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF G+DI+ +T + F ++VS E R K + + Y G ++ Sbjct: 683 AFIEGQDIHSSTAMRVFGISSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKEA 742 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + T+ + + S + ++ A+ Sbjct: 743 QRFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFHRRRYLPEINSRNFNLRSFAERTAI 802 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ 519 + G+A +++K A + + + Sbjct: 803 NTPIQGSAADIIKIAMIKMDERLKE 827 >gi|257882837|ref|ZP_05662490.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|261207884|ref|ZP_05922569.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289566952|ref|ZP_06447356.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|293569014|ref|ZP_06680327.1| DNA polymerase I [Enterococcus faecium E1071] gi|294623286|ref|ZP_06702151.1| DNA polymerase I [Enterococcus faecium U0317] gi|257818495|gb|EEV45823.1| DNA polymerase A [Enterococcus faecium 1,231,502] gi|260078267|gb|EEW65973.1| DNA polymerase A [Enterococcus faecium TC 6] gi|289161251|gb|EFD09147.1| DNA polymerase I [Enterococcus faecium D344SRF] gi|291588447|gb|EFF20282.1| DNA polymerase I [Enterococcus faecium E1071] gi|291597314|gb|EFF28500.1| DNA polymerase I [Enterococcus faecium U0317] Length = 881 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A+ + G+A Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806 Query: 504 ELVKKAWRAKHQGVLQL 520 +++K A + + + Sbjct: 807 DILKIAMIELDKRLKET 823 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K + G + VHDE+V E P+ S+ L +M + Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860 >gi|293556212|ref|ZP_06674802.1| DNA polymerase I [Enterococcus faecium E1039] gi|294615648|ref|ZP_06695503.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291591477|gb|EFF23131.1| DNA polymerase type I [Enterococcus faecium E1636] gi|291601631|gb|EFF31893.1| DNA polymerase I [Enterococcus faecium E1039] Length = 881 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 70/496 (14%), Positives = 163/496 (32%), Gaps = 76/496 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + + E+ + ++ A+ + G+A Sbjct: 747 KYPGVKEYMERIVREAKNQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806 Query: 504 ELVKKAWRAKHQGVLQ 519 +++K A + + + Sbjct: 807 DILKIAMIELDKRLKE 822 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K + G + VHDE+V E P+ S+ L +M + Sbjct: 801 IQGSAADILKIAMIELDKRLKEAGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860 >gi|314948920|ref|ZP_07852289.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] gi|313644710|gb|EFS09290.1| DNA-directed DNA polymerase [Enterococcus faecium TX0082] Length = 881 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELAEK 473 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A+ + G+A Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806 Query: 504 ELVKKAWRAKHQGVLQL 520 +++K A + + + Sbjct: 807 DILKIAMIELDKRLKET 823 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K + G + VHDE+V E P+ S+ L +M + Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860 >gi|257878419|ref|ZP_05658072.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257889382|ref|ZP_05669035.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257894395|ref|ZP_05674048.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260560008|ref|ZP_05832186.1| DNA polymerase A [Enterococcus faecium C68] gi|293559954|ref|ZP_06676462.1| DNA polymerase I [Enterococcus faecium E1162] gi|314937782|ref|ZP_07845099.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] gi|314941672|ref|ZP_07848552.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|314950962|ref|ZP_07854029.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|314992964|ref|ZP_07858360.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|314996411|ref|ZP_07861454.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|257812647|gb|EEV41405.1| DNA polymerase A [Enterococcus faecium 1,230,933] gi|257825742|gb|EEV52368.1| DNA polymerase A [Enterococcus faecium 1,231,410] gi|257830774|gb|EEV57381.1| DNA polymerase A [Enterococcus faecium 1,231,408] gi|260073843|gb|EEW62167.1| DNA polymerase A [Enterococcus faecium C68] gi|291606042|gb|EFF35468.1| DNA polymerase I [Enterococcus faecium E1162] gi|313589393|gb|EFR68238.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a01] gi|313592487|gb|EFR71332.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133B] gi|313596817|gb|EFR75662.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133A] gi|313599563|gb|EFR78406.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133C] gi|313642813|gb|EFS07393.1| DNA-directed DNA polymerase [Enterococcus faecium TX0133a04] Length = 881 Score = 220 bits (561), Expect = 5e-55, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELAEK 473 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A+ + G+A Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806 Query: 504 ELVKKAWRAKHQGVLQL 520 +++K A + + + Sbjct: 807 DILKIAMIELDKRLKET 823 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K + G + VHDE+V E P+ S+ L +M + Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860 >gi|69246664|ref|ZP_00604054.1| DNA polymerase A [Enterococcus faecium DO] gi|68195138|gb|EAN09596.1| DNA polymerase A [Enterococcus faecium DO] Length = 868 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 341 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 400 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 401 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELAEK 460 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 461 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 519 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 520 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 578 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 579 YVEGLLKVIQSDGKVHTRYV-QTLTQTGRLSSVDPNLQNIPIR----------------- 620 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 621 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 673 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 674 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 733 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A+ + G+A Sbjct: 734 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 793 Query: 504 ELVKKAWRAKHQGVLQL 520 +++K A + + + Sbjct: 794 DILKIAMIELDKRLKET 810 Score = 47.0 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K + G + VHDE+V E P+ S+ L +M + Sbjct: 788 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 847 >gi|86149106|ref|ZP_01067338.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597171|ref|ZP_01100406.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|218561997|ref|YP_002343776.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85840464|gb|EAQ57721.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190232|gb|EAQ94206.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 84-25] gi|112359703|emb|CAL34489.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925610|gb|ADC27962.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni IA3902] gi|315927859|gb|EFV07184.1| DNA polymerase I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 879 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 92/522 (17%), Positives = 178/522 (34%), Gaps = 99/522 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + +++ +++ T +LA + LAL + T E Sbjct: 381 IGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183 K + + +A +Y D T L PL + Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLETPLLEL 484 Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E D + + + G ++D + + L + E K L E+I L + + Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSG-SAIL 290 + LF + + T + +L H I ++ L +L S+ +L Sbjct: 544 QMGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLL 603 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL + R+ + G + TGR S QN+P Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G + +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKLLNAFANDEDIHA 694 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T F + + E R++ K + L Y G ++ K A+ ++++ +N Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAKSYIEKYFENF 750 Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506 S + + + E+ Y ++ L G+A +++ Sbjct: 751 TSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810 Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 K A ++ +LQ+ +L + E R Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852 Score = 45.1 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDE 631 G Y + ++ M+ Y + +I+Q + D++ M K ++L +HDE Sbjct: 775 GRKRYFDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEINKELNEDKKLILQIHDE 834 Query: 632 IVSETPDTPYFS-VGTLCSLM 651 ++ E D + V +M Sbjct: 835 LIFEVKDDLCENFVKKTRDIM 855 >gi|227892837|ref|ZP_04010642.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] gi|227865339|gb|EEJ72760.1| DNA-directed DNA polymerase [Lactobacillus ultunensis DSM 16047] Length = 886 Score = 220 bits (561), Expect = 6e-55, Method: Composition-based stats. Identities = 80/512 (15%), Positives = 169/512 (33%), Gaps = 76/512 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L L DE + + + + LGI + +LA + +N Sbjct: 365 DNLKHLLEDEKIKKNVFDLKRTTVGLHR-LGIHAHGLDY--DMLLASYL---VNNENNSN 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L HL K + + KG + P D NH+ + E K + + Sbjct: 419 DLGEIAHLYGDYSVKTDMEVYGKGKSEHIPDDDILFNHLASKVNAIEKLKEPLLKKLKEH 478 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 ++ E + + G +++ +++LQ A + K+L++ I + + Sbjct: 479 EQDDLFDTIEIPTARVLAKMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYEQAGERF-N 537 Query: 235 SRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAIL 290 L LF G+ ++ ++ +++ + + + +++ R + + Sbjct: 538 LNSPKQLGHILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQST- 596 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + DGR+ + TGR S QN+P + Sbjct: 597 YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT---------------- 639 Query: 351 ETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + +G D + +E RVLA ++G+ +AF G DI Sbjct: 640 --------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDAHMQEAFKTGYDI 690 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T K F+ D+V+ R K + + Y G +K + + Sbjct: 691 HSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAKEFIDNYF 750 Query: 464 QNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTA 502 + + + E+ ++ A+ + G+A Sbjct: 751 EQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGSA 810 Query: 503 CELVKKAWRA----------KHQGVLQLWKDL 524 +++K A K + V+Q+ +L Sbjct: 811 ADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 842 Score = 44.7 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +V+ VHDE++ + P ++ + +M Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSA 865 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 866 VK--LDVPLIADSGWGHNWY 883 >gi|294617839|ref|ZP_06697450.1| DNA polymerase type I [Enterococcus faecium E1679] gi|291595912|gb|EFF27194.1| DNA polymerase type I [Enterococcus faecium E1679] Length = 881 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 70/497 (14%), Positives = 162/497 (32%), Gaps = 76/497 (15%) Query: 73 SLFERILFKKTLGIDIPSKRWICTS----VLARTNGLPSSLK-NACLALNFSEHLTKMEE 127 S+FE F + K+ L R G + + L + K + Sbjct: 354 SVFENRAFHSWITDPTRLKKVYDAKRTYVALNRYTGKTKGIDFDVLLGAYLLDTNEKSTD 413 Query: 128 GKALIARFCKGSIDSPPY---DCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPL 180 + + A + I S + + +LF + R V A T +L + L Sbjct: 414 IEGIAAHYGYNDIQSDEAVYGKGAKKGLPEEEELFFAHLARKVAAINALTPKLSQELADK 473 Query: 181 SDG------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + E L ++ + G ++D + +++ + +++++ I + + Sbjct: 474 NQEDLFRKMELPLSIILAEMEISGIKVDATRLQEMKGEFSARLREIEQKIYEEAGEEF-N 532 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAIL 290 L + LF G+ ++ ++ + + + +D++ R + + Sbjct: 533 LNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLREQAPIVEDILTYRQIAKIQST- 591 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + + SDG++ ++TGR S QN+P + Sbjct: 592 YVEGLLKVIQSDGKVHTRYV-QALTQTGRLSSVDPNLQNIPIR----------------- 633 Query: 351 ETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + + +D + IE RVLA I+ ++ AF G+DI+ Sbjct: 634 -------LDEGRKIRQAFVPREKDWLIYSSDYSQIELRVLAHISNDEHLKAAFLEGQDIH 686 Query: 410 VTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 +T + F + V+ R K + + Y G ++ + + + Sbjct: 687 ASTAMRVFGIEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGISRKAAQQYIDTYFE 746 Query: 465 NVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + S + ++ A+ + G+A Sbjct: 747 KYPGVKEYMERIVREAKDQGYVETLYHRRRYLPDINSRNYNIRSFAERTAINTPIQGSAA 806 Query: 504 ELVKKAWRAKHQGVLQL 520 +++K A + + + Sbjct: 807 DILKIAMIELDKRLKET 823 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DIL M K + G + VHDE+V E P+ S+ L +M + Sbjct: 801 IQGSAADILKIAMIELDKRLKETGLQATMLLQVHDELVFEVPEKELESLDKLVKEVMEQA 860 >gi|320547600|ref|ZP_08041885.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] gi|320447675|gb|EFW88433.1| DNA-directed DNA polymerase I [Streptococcus equinus ATCC 9812] Length = 878 Score = 220 bits (560), Expect = 6e-55, Method: Composition-based stats. Identities = 79/573 (13%), Positives = 178/573 (31%), Gaps = 78/573 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW ++ T + DL + + + F+R + LG+D+P+ Sbjct: 336 IIGFAWGNDKAIYV-STNLDLLKDDLFKAALAKPIKTY----DFKRSKVLLSHLGVDLPA 390 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + S LA+ + A + KG + P Sbjct: 391 PAF--DSRLAKYLLSTVDDNELSTIAQLYTDYVLDSD----EAVYGKGVKRAVPEKAVLL 444 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 +H+ + + ++ + ++ L D E+ L + + G + + + +++ Sbjct: 445 SHLARKIVVLNHSEKVMLGKLTEHQQASLLFDMEQPLANVLAKMEIAGISVKKETLQEME 504 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + L ++I L + L LF + + + + Sbjct: 505 KANQAAIDNLTQEIYDLAGMEF-NINSPKQLGELLFDKMQLPTSYTKKTKTGYSTAVDVL 563 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + DG++ ++TGR S Sbjct: 564 ERLAPISPIVSKILEYRQIAKLQSTYIVGLQDFILKDGKIHTRY-LQDLTQTGRLSSVDP 622 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGI 384 QN+P +R + + L+ +D + I Sbjct: 623 NLQNIP------------------------VRLEQGRLIRKAFVPETADEVLLSSDYSQI 658 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ- 442 E RVLA I+ ++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 659 ELRVLAHISNDEHLIAAFNEGADIHTSTAMRVFGIEKPEDVTPNDRRNAKAVNFGIVYGI 718 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW---------------------EQA 478 G A ++ + + + + Sbjct: 719 SDYGLANNLGIPRKVAKQYIETYFERYPGIKDYMERVVRDAKDKGYVETLFHRRRELPDI 778 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI 538 + + ++ A+ + G+A +++K A + +++ + + Sbjct: 779 NARNFNVRQFAERTAINSPIQGSAADILKIAMINLDKALVE--------GKFKTKMLLQV 830 Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 + VP+ + ++ V + S+ L Sbjct: 831 HDEIILEVPKDELEAIEKLVKETMESAIELSVP 863 >gi|322373711|ref|ZP_08048247.1| DNA polymerase I [Streptococcus sp. C150] gi|321278753|gb|EFX55822.1| DNA polymerase I [Streptococcus sp. C150] Length = 879 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 71/474 (14%), Positives = 149/474 (31%), Gaps = 66/474 (13%) Query: 79 LFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG 138 + LGID+P+ + + LA+ L + + KG Sbjct: 380 VLLSHLGIDLPTANF--DARLAKYLLSTVEDNELSTIARLYTDLPLETD----EVVYGKG 433 Query: 139 SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDR 197 + + P +H+ ++ + V + L D E L + + Sbjct: 434 AKRAVPEKEVLLSHLAK-KVKVLQVAKPVMLEKLAEHSQSELLFDMELPLANVLAKMEIA 492 Query: 198 GYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS 257 G ++ + ++ KL ++I ++ + L + LF + L Sbjct: 493 GIKVKGQTLNEMAVENQVVIDKLTQEIYEMAGEEF-NINSPKQLGVILFEKMELPLEYTK 551 Query: 258 EGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFY 312 + + + +LA + I KL + L + + DG++ Sbjct: 552 KTKTGYSTAVDVLERLAPIAPIVAKILEYRQITKLQSTYVLGLQDYILEDGKIHTRYV-Q 610 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS- 371 ++TGR S QN+P +R + S Sbjct: 611 DLTQTGRLSSVDPNLQNIP------------------------VRLEQGRLIRKAFVPST 646 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRA 430 L+ +D + IE RVLA I+G++ I AF G DI+ +T + F + V+ R Sbjct: 647 EDAVLLSSDYSQIELRVLAHISGDEHLIAAFKEGADIHTSTAMRVFGIEKPEDVTPNDRR 706 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE------------- 473 K + + Y G + + + + + Sbjct: 707 NAKAVNFGIVYGISDFGLSNNLGISRKKAKEYINTYFERYPGIKAYMENVVREAKDKGYV 766 Query: 474 --------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + S + +++ A+ + G+A +++K A + +++ Sbjct: 767 ETLFHRRRELPDINSRNFNVRNFAERTAINSPIQGSAADILKIAMINLDKALVE 820 >gi|283955763|ref|ZP_06373254.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] gi|283792718|gb|EFC31496.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 1336] Length = 879 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 93/522 (17%), Positives = 177/522 (33%), Gaps = 99/522 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + G+++ +++ T +LA + LAL + T E Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183 K + + +A +Y D T L PL + Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLEAPLLEL 484 Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E D + + + G ++D + + L + E K L E+I L + + Sbjct: 485 AKNCEFDFIRIIMMMEENGIKLDTNALEALMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILNRLASSG-SAIL 290 + LF + + L ++L H I ++ L +L S+ +L Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPIIPKILDYRELAKLYSTYCEPLL 603 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL + R+ + G + TGR S QN+P Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G + +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHA 694 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T F + + E R++ K + L Y G ++ K A ++++ +N Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750 Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506 S + + + E+ Y ++ L G+A +++ Sbjct: 751 TSIKKYFETVKNEAKQNGFITTLNSRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810 Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 K A + +LQ+ +L + E R Sbjct: 811 KLAMLEIDKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN---GYDIVLTVHDEIVS 634 Y + ++ M+ Y + +I+Q + D++ M K ++L +HDE++ Sbjct: 778 RYFDFENAKPMQIAMYERESINSILQGSAADVIKLAMLEIDKELNEDKKLILQIHDELIF 837 Query: 635 ETPDTPYFS-VGTLCSLM 651 E D + V +M Sbjct: 838 EVKDDLCENFVKKTRDIM 855 >gi|317133543|ref|YP_004092857.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] gi|315471522|gb|ADU28126.1| DNA polymerase I [Ethanoligenens harbinense YUAN-3] Length = 870 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 74/381 (19%), Positives = 132/381 (34%), Gaps = 64/381 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G+ +D + E + ++ ++++IV + L Sbjct: 471 EVELPLARVLAQMEHAGFLVDAAGIAAYGETLGKKLAAIEQEIVDAVGYPF-NLNSPKQL 529 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF+ G+ ++ T +L A D +L S + L + Sbjct: 530 GEALFVKLGLPHGKKTKTGWSTSADVLDKLRGAHPAIDALLGYRKLSKLKSTYTDGLLKV 589 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DGR+ + +RTGR S QN+P + Sbjct: 590 IAPDGRIHSSFNQVE-TRTGRISSTEPNLQNIPVRS------------------------ 624 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R +A G LV AD + IE R+LA IA + I AF N EDI+ T ++ F Sbjct: 625 AEGRELRRFFVARPGWVLVDADYSQIELRILAHIADDAAMIAAFNNHEDIHTITASQVFG 684 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTFED 474 P + V+ R+ K + + Y GA + ++ + Q + + Sbjct: 685 MPPEYVTPIMRSRAKAVNFGIVYGIGAFSLSQDIGVSVKEADSYIKGYLQKFSGVRDYME 744 Query: 475 WEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAW--- 510 E+H M+ A + GTA +++K A Sbjct: 745 RVIREAHEKGYVETLFGRRRVLPELLSSNHNMRAFGERVARNTPIQGTAADIIKIAMVRV 804 Query: 511 -----RAKHQG--VLQLWKDL 524 R + Q +LQ+ +L Sbjct: 805 RDRLEREQMQSALILQVHDEL 825 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYF 642 R +G ++ N +Q + DI+ M ++L VHDE++ E P+ Sbjct: 776 MRAFGERVARNTPIQGTAADIIKIAMVRVRDRLEREQMQSALILQVHDELIVEAPEDEAA 835 Query: 643 SVGTLCS 649 G + Sbjct: 836 RAGQILE 842 >gi|238060173|ref|ZP_04604882.1| DNA polymerase I [Micromonospora sp. ATCC 39149] gi|237881984|gb|EEP70812.1| DNA polymerase I [Micromonospora sp. ATCC 39149] Length = 902 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 95/535 (17%), Positives = 175/535 (32%), Gaps = 83/535 (15%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D E + L L D V H+S R+ F R + LA Sbjct: 368 DPAELAESDERALAAWLADPARPKVLHDSKHARLAFAARGWSLAGVAR---DTELAAYLA 424 Query: 105 LPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEY 162 P S LAL + +++ + F D + + +QA Sbjct: 425 RPDQRSYDLTDLALRYLHRELRVDAPETGQLTFDGLGDDG---EAEQNLMLQARATLDLA 481 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 D E +R+ + ++ E L + + G DLD + +L+ A E K + Sbjct: 482 DAIDAELSRDGEQSARLMAQVELPLSEVLAAMQRVGIAADLDYLQELEAHFAGEVKSAAQ 541 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSH---SNITQ 272 + L+ LF G+ + L+ + + + Sbjct: 542 GAYAAVGREF-NLGSPKQLQELLFGELGLPKTKKIKTGYTTDADALQWLYAQNPLPVLEH 600 Query: 273 LAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L + + +L ++ ++ L ++VS DGR+ T + A+ TGR S QN+P Sbjct: 601 LLRHRDVAKLKTT------VDGLLKSVSEDGRIHTTFKQTVAA-TGRLSSTDPNLQNIPI 653 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAW 391 + +R + G + L+ AD + IE R++A Sbjct: 654 RT------------------------EEGRRIRRAFVVGKGFECLLTADYSQIEMRIMAH 689 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 ++ +D I+AF +G D + T + F P+ +V+ +QR K M L Y G ++ Sbjct: 690 LSSDDKLIEAFNSGHDFHAATASSVFGVPVAEVTADQRRKIKAMNYGLAYGLSAFGLSQQ 749 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQ 486 A + + + A + H + Sbjct: 750 LGITAEEARGLMDNYFAGFGGVRDYLQEVVARARHDGYTSTILGRRRYLPDLVSDNRQRR 809 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEG 535 D A+ + G+A +++K A G ++ + + V G Sbjct: 810 DMAERMALNAPIQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPG 864 Score = 45.1 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M G ++L VHDE+V E ++ L S M + Sbjct: 821 IQGSAADIIKVAMLRVDAGLREAGLRSRMLLQVHDELVFEVAPGERDTLEALVRSQMGEA 880 >gi|86151514|ref|ZP_01069729.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157414635|ref|YP_001481891.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni 81116] gi|315123903|ref|YP_004065907.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841861|gb|EAQ59108.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 260.94] gi|157385599|gb|ABV51914.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 81116] gi|307747275|gb|ADN90545.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni M1] gi|315017625|gb|ADT65718.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315931584|gb|EFV10550.1| DNA-directed DNA polymerase [Campylobacter jejuni subsp. jejuni 327] Length = 879 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 92/522 (17%), Positives = 178/522 (34%), Gaps = 99/522 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + G+++ +++ T +LA + LAL + T E Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183 K + + +A +Y D T L PL + Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLETPLLEL 484 Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E D + + + G ++D + + L + E K L E+I L + + Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILNRLASSG-SAIL 290 + LF + + L ++L H I ++ L +L S+ +L Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLL 603 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL + R+ + G + TGR S QN+P Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G + +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHA 694 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T F + + E R++ K + L Y G ++ K A ++++ +N Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750 Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506 S + + + ++ Y ++ L G+A +++ Sbjct: 751 TSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810 Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 K A ++ +LQ+ +L + E R Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 14/107 (13%) Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 V + K++ I S R+ Y + ++ M+ Y + +I+Q + D Sbjct: 759 TVKNKAKQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAAD 808 Query: 609 ILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 ++ M K ++L +HDE++ E D + V +M Sbjct: 809 VIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855 >gi|172040823|ref|YP_001800537.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] gi|171852127|emb|CAQ05103.1| DNA polymerase I [Corynebacterium urealyticum DSM 7109] Length = 879 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 64/398 (16%), Positives = 132/398 (33%), Gaps = 61/398 (15%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + RG +D + +L + +L + + L+ Sbjct: 479 EVPLTHILAEMEARGIAVDKAALEELAADYEAQIADEVTAARELAEDDQLNLSSPKQLQK 538 Query: 244 YLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK----LNTLSEAV 299 LF G+ ++ + + Q + + K ++ L A+ Sbjct: 539 VLFEDFGLPKTKKTKTGYSTAAAELEKLQQQTEHPFLNHLMAHREYQKMKSTIDGLINAI 598 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DGR+R T GA+ TGR S QN+P + + Sbjct: 599 DGDGRIRTTFNQKGAA-TGRLSSSEPNLQNIPVRTEA----------------------- 634 Query: 360 ASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +RS G L+ AD + IE RV+A ++ + I+A+ GED++ ++ F+ Sbjct: 635 -GRKIRSAFRVGEGYETLLTADYSQIEMRVMAHLSEDAGLIEAYRAGEDLHNYVGSRVFD 693 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 P+D+V+ E R K + L Y G ++ ++ + + D Sbjct: 694 VPVDEVTPELRRRVKALSYGLVYGLSAFGLSQQLGISPGEAKGIMENYFDRFGGVKRYLD 753 Query: 475 W---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + S + ++ A+ + GTA +++K A Sbjct: 754 KVVEAAKETGYTETLYGRRRYLPELASSNRVARENAERAALNAPIQGTAADIIKLAMLRV 813 Query: 514 HQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545 + + ++ + + + G +++ Sbjct: 814 DRALRNANLKSRVLLQVHDELVLEIAPGELEQIQQLLE 851 Score = 44.0 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNP 655 +Q + DI+ M + ++L VHDE+V E + + L+ +N Sbjct: 798 IQGTAADIIKLAMLRVDRALRNANLKSRVLLQVHDELVLEI---APGELEQIQQLLEENM 854 Query: 656 SWAKGL--PLK 664 A L PL Sbjct: 855 DSAASLRVPLD 865 >gi|283955185|ref|ZP_06372687.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] gi|283793398|gb|EFC32165.1| DNA polymerase type I [Campylobacter jejuni subsp. jejuni 414] Length = 879 Score = 220 bits (560), Expect = 8e-55, Method: Composition-based stats. Identities = 103/594 (17%), Positives = 198/594 (33%), Gaps = 112/594 (18%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-----QSAMP----SD 56 +D E+ G+ A++A I ++ ++ T + Sbjct: 313 LDKESIIAFDTETTGLD--AKEAKIVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKK 370 Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 ++ + + V+ HN ++ + + + + + + T +LA + LAL Sbjct: 371 AIELIFNHFVI--GHNLKYDFKIIQNNFNLTL-PQEYADTMILAWLKNPSLRVNMDDLAL 427 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE---- 172 + T E K + + +A +Y D T Sbjct: 428 RLFNYETLHFES------LVKKGENFTSVELEKA---------CKYAAEDAYITLRFYLY 472 Query: 173 -LFKRLIPLSDG----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 L PL + E D + I + G ++D + + L + E K L E+I L Sbjct: 473 FLKNLETPLLELAKTCEFDFIKIIMMIEENGIKLDTNALEILMKKFENEIKNLSEEIYIL 532 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLIL 279 + + + LF + + L ++L H I ++ L Sbjct: 533 CEDRF-NLNSPKQVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYREL 591 Query: 280 NRLASSG-SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 +L S+ +LKL + R+ + G + TGR S QN+P Sbjct: 592 AKLYSTYCEPLLKL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----- 641 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G + +SC +A G + D + IE R+LA + ++ Sbjct: 642 -------------------GQYAKNYKSCFVAKEGFSFISLDYSQIELRMLAHFSEDEKL 682 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 + AFAN EDI+V T F + + E R++ K + L Y G ++ K AS Sbjct: 683 LNAFANDEDIHVRTAMMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEASL 738 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAV 494 ++++ +N S + + + E+ Y ++ Sbjct: 739 AKSYIEKYFENFTSIKKYFEKIKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI 798 Query: 495 KDKLIGTACELVKKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 L G+A +++K A ++ +LQ+ +L + E R Sbjct: 799 NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDKLCENFVKKTR 852 Score = 44.0 bits (102), Expect = 0.085, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 14/101 (13%) Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 K++ I S R+ Y + ++ M+ Y + +I+Q + D++ M Sbjct: 765 KQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAADVIKLAM 814 Query: 615 KNATK---NGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 K ++L +HDE++ E D + V +M Sbjct: 815 LEINKELNEDKKLILQIHDELIFEVKDKLCENFVKKTRDIM 855 >gi|257056582|ref|YP_003134414.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] gi|256586454|gb|ACU97587.1| DNA polymerase I [Saccharomonospora viridis DSM 43017] Length = 901 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 95/526 (18%), Positives = 174/526 (33%), Gaps = 97/526 (18%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWI-----CTSVLARTNGLPS--SLKNAC 113 L DE + V H KK L + S+ W + LA P S K Sbjct: 384 LADENIHKVGH-------SLKKAL-HGLRSRGWRLAGLVMDTELAAYLVRPGQRSFKLDD 435 Query: 114 LALNF--SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L L + E ++ EG ++ S + + A Sbjct: 436 LVLRYLGKELRSEGVEGDGQLSLLDTDSDNEIVRRELVR------ARAVLELSSALSAEL 489 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L+D E L + + G +D+D++ +L+ A K+ E + Sbjct: 490 AAIGATTLLADIELPLLSMITDLEAAGIAVDIDVLTELEAHYANRVKQATEQAYSVIGKQ 549 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG----------TLKSILSHSNITQLAKDLILNR 281 I + L++ LF G+ ++ TL H + L + + Sbjct: 550 I-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALQTLYEKTEHPFLQYLLEHRDATK 608 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 L S+ + L +AV+ DGR+ TL + TGR S QN+P + Sbjct: 609 LRST------VEGLIKAVADDGRIHTTL-HQTITATGRLSSVDPNLQNIPVRT------- 654 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIK 400 +R + G +L+ AD + IE R++A ++ ++ I+ Sbjct: 655 -----------------DEGRRIREAFVVGEGYAELMTADYSQIEMRIMAHLSNDEALIE 697 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +G D + T A+ F+ +V+ EQRA K M L Y G ++ + Sbjct: 698 AFHSGFDFHAATAARVFDVDPTEVTGEQRAKIKAMNYGLAYGLSAYGLSQQLRISTEEAR 757 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 + ++ + S + ++ A+ Sbjct: 758 ALMDEYFLRFGGVRDYLHSVVERAAKEGYTETIFGRRRYLPDLTSTNRQRREMAERMALN 817 Query: 496 DKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEG 535 + G+A +++K A H+ ++ + + V +G Sbjct: 818 APIQGSAADIIKVAMLGVHRALAEAGLRSRVLLQVHDELMLEVADG 863 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 93/278 (33%), Gaps = 35/278 (12%) Query: 396 DWKIKAFANGEDIYVT-----TYA-KAFNTPIDKV-----SKEQRAIGKVMELALGYQGG 444 + IKA A+ I+ T T + + + + E R I + + GY Sbjct: 614 EGLIKAVADDGRIHTTLHQTITATGRLSSVDPNLQNIPVRTDEGRRIREAFVVGEGYAEL 673 Query: 445 AKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + L +++ + D+ A + ++ D P ++ Sbjct: 674 MTADYSQIEMRIMAHLSNDEALIEAFHSGFDFHAATAARVFDVD--PTEVTGEQRAKIKA 731 Query: 504 ELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 A+ G+ Q + TE ++ E L + +H V+ Sbjct: 732 MNYGLAYGLSAYGLSQQLRISTEEARALMDE------------YFLRFGGVRDYLHSVVE 779 Query: 564 SSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKNG 621 + + Y++ + G YL TS + R ++ N +Q + DI+ M + Sbjct: 780 RAAKEGYTETIFGRRRYLPDLTSTNRQRREMAERMALNAPIQGSAADIIKVAMLGVHRAL 839 Query: 622 Y------DIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652 ++L VHDE++ E D + V L M Sbjct: 840 AEAGLRSRVLLQVHDELMLEVADGEHAQVEELVRREMG 877 >gi|284991623|ref|YP_003410177.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] gi|284064868|gb|ADB75806.1| DNA polymerase I [Geodermatophilus obscurus DSM 43160] Length = 912 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 103/573 (17%), Positives = 170/573 (29%), Gaps = 111/573 (19%) Query: 33 CAYAWDDEPVKLWDRTEQ-SAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPS 90 A A D+ D A+ L L D V H Sbjct: 361 IALAGGDDHATFVDLGPGLDAVDEQALADWLADPDAQKVVHEVK---GPLLAVWARGWDL 417 Query: 91 KRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + + LA LP S A LA+ + K + Sbjct: 418 AGVVSDTALAAYLALPGQRSFDLADLAVRYLRRELKDSAAEE-------------TQLTL 464 Query: 149 RANHVQAWQLFGEYCKRDV---EATRELFKRLIPLSD----------GERDLWLLDQTIN 195 L E DV A +L L L E L + + Sbjct: 465 DGMGPSEEDLAREAAHADVLKAVAVNDLSDALDSLLGQRGGDALLGGIELPLTFVLARME 524 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 RG DLD + +LQ A + + + + L+ LF G+ Sbjct: 525 QRGIAADLDFLHELQREFADGVAAAAAEAYAVIGREV-NLGSPKQLQAVLFDELGLPKTK 583 Query: 256 MSEGT----------LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRL 305 + L + H + L + + RL + ++ L V GR+ Sbjct: 584 KIKSGYTTDAEALTNLLAQTGHPFLEHLLRHRDVTRLRTV------IDGLIPMVDDGGRI 637 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T Q A+ TGR S QN+P + +R Sbjct: 638 HTTFQQTIAA-TGRLSSIDPNLQNIPIRT------------------------AEGRRIR 672 Query: 366 SCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + +G + L+ AD + IE R++A ++G+ I+AF +GED++ ++A++ PI+ V Sbjct: 673 QAFVVGSGHESLMTADYSQIEMRIMAHLSGDAGLIEAFTSGEDLHSFVASRAYDIPIEDV 732 Query: 425 SKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------ 474 E R K M L Y G A + + + + + D Sbjct: 733 DPEMRRRIKAMSYGLAYGLSAYGLAGQLRISVEEAREQMHAYFERFGGIREYLDGVVDDA 792 Query: 475 ---------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV-- 517 S + + A+ + G+A +++K A Q + Sbjct: 793 RQTGYTETTLGRRRYLPDLTSDNGQRRQMAERMALNAPIQGSAADVIKVAMLRVEQAIAD 852 Query: 518 --------LQLWKDLTEGFACVVQEGGSISARR 542 LQ+ +L A +E RR Sbjct: 853 EGLRSRMLLQVHDELVLEVAPGEREALETLVRR 885 >gi|329667767|gb|AEB93715.1| DNA polymerase I [Lactobacillus johnsonii DPC 6026] Length = 886 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 79/508 (15%), Positives = 167/508 (32%), Gaps = 86/508 (16%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L + L D+T+ + + + +D+ ++ +LA + +N Sbjct: 366 PLHKMLEDKTIKKNVFDIKRTYVGLHR---LDLKAEGLDYDMLLASYL---VNNENNSND 419 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L HL K + + KG + P D + F + + + Sbjct: 420 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPNDN---------EFFEHLAAKVAVIEKLKTQ 470 Query: 176 RLIPLSDGERD-LWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L L D E+D L+ + + G +++ ++ +L A + ++L+ I + Sbjct: 471 LLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQ 530 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF G+ + ++ + + + QL + Sbjct: 531 QAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDY 587 Query: 287 SAILKLN-----TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 I K+ L + + DGR+ + TGR S QN+P + Sbjct: 588 RQIAKIQNTYVKGLLDCIQPDGRIHTRY-LQTLTTTGRLSSVDPNLQNIPTKT------- 639 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + S +G D + +E RVLA ++G++ Sbjct: 640 -----------------EEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQ 681 Query: 400 KAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AF +G DI+ T K F+ D+V+ R K + + Y G +K Sbjct: 682 EAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQ 741 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493 ++ + + + D ++ + ++ A Sbjct: 742 AKTFIENYFEQYPQIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTA 801 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + G+A +++K A + + +L Sbjct: 802 INSPIQGSAADIIKIAMINMQKKLDELH 829 Score = 45.1 bits (105), Expect = 0.041, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +VL VHDE++ + P ++ + +M Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELNTIKKIVPEVMQSA 865 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 866 VK--LDVPLIAD 875 >gi|296273188|ref|YP_003655819.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] gi|296097362|gb|ADG93312.1| DNA polymerase I [Arcobacter nitrofigilis DSM 7299] Length = 900 Score = 219 bits (559), Expect = 8e-55, Method: Composition-based stats. Identities = 99/588 (16%), Positives = 199/588 (33%), Gaps = 96/588 (16%) Query: 7 DIETRS-PQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR 62 D ET S + K+ +++ A A+++ P ++ D + Sbjct: 337 DTETTSLDTKIAKIVGFSFCFNENSAYYIPIAHSYLGAPEQV--------SIEDAKSAIN 388 Query: 63 DETVMC-VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + N ++ + K DI + T +LA S + LA N+ +H Sbjct: 389 KLNNFKLIVQNFKYDFDIIK--FNFDIELNLFADTIILAWLLDSSSKVGLDALAKNYFDH 446 Query: 122 LTKMEEGKALIAR---FCKGSIDS---PPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 M K ++ + F I + + + ++L E+ K++ E ++ Sbjct: 447 --TMIAFKDVVKKGDDFSTVDISNACNYAAEDALMTYKIYFKLLEEFKKQNCEHLLKIAN 504 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 D E + + + G +ID ++ L+ + ++L + I +L + Sbjct: 505 ------DYEFKFIDVLINMQNNGVKIDTQILKNLKIQNQEYIQELTKKIHELAGTKF-NI 557 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L + LF G+ + T + +L+ + +IL+ + + Sbjct: 558 NSPKQLGVILFENLGLTASKKGKTGYSTNEVVLNKLVDSHEIIPVILDYREAYKLQSTYI 617 Query: 293 NTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L E S+D ++ + G + TGR S QN+P Sbjct: 618 EPLLELASNDSENKIYTSFLQTG-TATGRLSSKNPNLQNIP------------------- 657 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 A +R IA +G KLV D + IE R+LA + + + AF + DI+ Sbjct: 658 -----VKSSAGREIRKAFIARDGYKLVGIDYSQIELRLLAHFSKDKALVDAFNSDLDIHS 712 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T K F ++ + ++R I K + L Y G A K + + + + Sbjct: 713 QTAVKIFG---EEKASQKRNIAKTINFGLLYGMGSKKLADTLKITPKEAKVYIDSYFEAF 769 Query: 467 KSTSTFE--------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + + + Y AV K G+A +L+ Sbjct: 770 TNVKEYMKSIEDFALENGYVETLIKRRRIFDFNAANTMQRIGYLREAVNTKFQGSAADLI 829 Query: 507 KKAW---------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 K + + +LQ+ +L Q+ + +++ Sbjct: 830 KLSMIKIFEKYKNNEDLKMILQIHDELIFEVKNEKQDEITNDLKKIME 877 >gi|254518126|ref|ZP_05130182.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] gi|226911875|gb|EEH97076.1| DNA polymerase I [Clostridium sp. 7_2_43FAA] Length = 532 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 104/546 (19%), Positives = 190/546 (34%), Gaps = 90/546 (16%) Query: 30 ITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIP 89 I L A++ V +++ L L D+ ++ V HN+ F+ + F ++ G + Sbjct: 23 IKLIAFSKGLNEV-----VTTTSVDERLKSILNDKNIIKVFHNAKFD-VGFFQSKGYRVN 76 Query: 90 SKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + CT ++A+ G E L+ KAL ++ +D Sbjct: 77 --NYHCTLLMAQVLG--------------EEKLSL----KALAKKYLDVDMDKSMQHSDN 116 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPLS---------DGERDLWLLDQTINDRGYR 200 + Q +Y +DVE TR L+ +L+ L + ER + G Sbjct: 117 WQETEITQEHIDYAVKDVEHTRALYYKLLDLLVENNLLTVYERERRALPAIVMLESNGIN 176 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 ++ D + + +L+ I L + + L + GI L S+ Sbjct: 177 MEFDKWNARLDDDRRLAVELEIRIKDLLNRKELNLNSPKQLVE-AIVEYGIKLHSTSDDE 235 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L + +L + RL + L + + +DGR+R + G SR+GR Sbjct: 236 LAKYSDEHEVIKLIRKY--RRLQAKI--KTYGEKLKKFIDNDGRIRAHWRLIG-SRSGRM 290 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVAD 380 S Q +P R +A G KL+ +D Sbjct: 291 SCNNPPLQAMPGNS------------------------------REFFVADEGYKLIGSD 320 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE RVLA I+ ++ I F NG D+++ T + F PID++SKE+R + K + + Sbjct: 321 YSQIELRVLASISKDETLISYFNNGIDLHLGTASLIFKKPIDEISKEERQVAKSLNFGIV 380 Query: 441 YQ---GGAK------VFKTMASHCGLDLQQFSQNVKSTSTFED-------WEQAESHHLW 484 Y G + T +F +D + Sbjct: 381 YGITAYGIQKNLRKSGVDTSLEEAEKYRIEFLNVYPKVKELQDSLLKADYIKTLGGRRWQ 440 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDL---TEGFACVVQEGGSISAR 541 + + G+A E +K+A + + + W+ + + V E + A+ Sbjct: 441 GGSLTMTQRLNLPIQGSAAEGLKEALALLVERMKESWRLVAVIHDEILLEVPEDEAEEAK 500 Query: 542 RVANVP 547 + Sbjct: 501 NILESC 506 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 569 VYSDVKG--DCSYLNTATSQLMRERTYGGKLTE----NI-VQAISRDILCEGMKNATKN- 620 VY VK D L R GG LT N+ +Q + + L E + + Sbjct: 414 VYPKVKELQDSLLKADYIKTLGGRRWQGGSLTMTQRLNLPIQGSAAEGLKEALALLVERM 473 Query: 621 --GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 + +V +HDEI+ E P+ + Sbjct: 474 KESWRLVAVIHDEILLEVPEDEAEEAKNILE 504 >gi|205356012|ref|ZP_03222780.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] gi|205346136|gb|EDZ32771.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni CG8421] Length = 879 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 94/522 (18%), Positives = 180/522 (34%), Gaps = 99/522 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + G+++ +++ T +LA S + LAL + T E Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSSRVNMDDLALRLFNYETLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183 K + + +A +Y D T L PL + Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLDFLKNLETPLLEL 484 Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E D + + + G +++ + + L + E K L E+I L + + Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLNTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSG-SAIL 290 + LF + + T + +L H IT++ L +L S+ +L Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLNILLDKHPVITKILDYRELAKLYSTYCEPLL 603 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL + R+ + G + TGR S QN+P Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G + +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHA 694 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T F + + E R++ K + L Y G ++ K A ++++ +N Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750 Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506 S + + + E+ Y ++ L G+A +++ Sbjct: 751 TSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810 Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 K A ++ +LQ+ +L + E R Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852 Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 14/101 (13%) Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 K++ I S R+ Y + ++ M+ Y + +I+Q + D++ M Sbjct: 765 KQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAADVIKLAM 814 Query: 615 KNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 K ++L +HDE++ E D + V +M Sbjct: 815 LEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855 >gi|157804146|ref|YP_001492695.1| DNA polymerase I [Rickettsia canadensis str. McKiel] gi|157785409|gb|ABV73910.1| DNA polymerase I [Rickettsia canadensis str. McKiel] Length = 875 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 70/370 (18%), Positives = 133/370 (35%), Gaps = 54/370 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 S+ + + + + G ++D + + +L E +L+E+I L+ + Sbjct: 473 YSNIDLPICFILDKMEKVGIKVDANYLKQLSAEFGTEIARLEEEIFALSGTKF-NIGAPK 531 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293 L LF + S T + +L+K DL+L + + Sbjct: 532 QLGEILFEKMQLPFGKASAKTNSYSTGVEILKKLSKHGYNIADLLLRWRQLTKLKNTYTD 591 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + + + R T ++ TGR S QN+P + Sbjct: 592 SLPKQIDNITRRVHTTFLQTSTTTGRISSQEPNLQNVPIRS------------------- 632 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R I G KL+ AD + IE R+L+ IA D +AF N +DI+ T Sbjct: 633 -----SEGNKIRQAFIPEKGYKLISADYSQIELRILSHIANIDALKQAFTNKDDIHTQTA 687 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + FN P DK++ + R K + + Y G A+ S ++++ K Sbjct: 688 CQIFNLPKDKLTSKHRRKAKAINFGIIYGISAFGLAQQLNVTNSEAAEYIKKYFAEYKGV 747 Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + +A H+ ++ A+ + GT +++K A Sbjct: 748 QEYIEQTKAFVSSNGYVTNFFGRKCFLPSIHNKKLKQFAERAAINAPIQGTNADIIKIAM 807 Query: 511 RAKHQGVLQL 520 Q + +L Sbjct: 808 INLDQEIEKL 817 >gi|153951516|ref|YP_001398611.1| DNA polymerase I [Campylobacter jejuni subsp. doylei 269.97] gi|152938962|gb|ABS43703.1| DNA polymerase type I [Campylobacter jejuni subsp. doylei 269.97] Length = 879 Score = 219 bits (559), Expect = 9e-55, Method: Composition-based stats. Identities = 94/522 (18%), Positives = 178/522 (34%), Gaps = 99/522 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + G+++ +++ T +LA + LAL + T E Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183 K + + +A +Y D T L IPL + Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLEIPLLEL 484 Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E D + + + G ++D + + L + E K L E+I L + + Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEALMKKFENEIKILSEEIYTLCEDRF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSG-SAIL 290 + LF + + T + +L H IT++ L +L S+ +L Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLHALLDKHPVITKILDYRELAKLYSTYCEPLL 603 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL + R+ + G + TGR S QN+P Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G + +SC +A +G D + IE R+LA + ++ + AF N EDI+ Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFTSLDYSQIELRMLAHFSEDEKLLNAFTNDEDIHA 694 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T F + + E R++ K + L Y G ++ K A ++++ +N Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750 Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506 S + + + E+ Y ++ L G+A +++ Sbjct: 751 TSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADII 810 Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 K A ++ +LQ+ +L + E R Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852 Score = 45.9 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 14/101 (13%) Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 K++ I S R+ Y + ++ M+ Y + +I+Q + DI+ M Sbjct: 765 KQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAADIIKLAM 814 Query: 615 KNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 K ++L +HDE++ E D + V +M Sbjct: 815 LEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855 >gi|158313878|ref|YP_001506386.1| DNA polymerase I [Frankia sp. EAN1pec] gi|158109283|gb|ABW11480.1| DNA polymerase I [Frankia sp. EAN1pec] Length = 911 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 90/545 (16%), Positives = 158/545 (28%), Gaps = 75/545 (13%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D H+ + + + LA LP S A LAL + Sbjct: 396 LADPDRAKAGHDLKGPMLALAEA---GFTLAGVTSDTALAAYLALPGQRSFDLADLALRY 452 Query: 119 SEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 K + G D D RA D + R RL Sbjct: 453 LHRELKSDAPSNGQLTLDGSGEADEAEADAIRARAALELAD-----ALDGDLERRSAARL 507 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L + E L + T+ G D D +L+LQ+ E + + + Sbjct: 508 --LREMELPLVTILATMERAGIAADEDHLLELQKHYGGEVSDVAAQAHGIVGRTF-NLGS 564 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----N 293 L+ LF + + + D L + + +L + Sbjct: 565 PKQLQQILFDELALPKTKRIKTGYTTDADALAWLATQSDHPLIPVLLHHRDVARLKTVVD 624 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + GR+ T A+ TGR S QN+P + Sbjct: 625 SLIPMIDDAGRIHTTFNQMIAA-TGRLSSTDPNLQNIPIRT------------------- 664 Query: 354 ADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + G L+ AD + IE R++A ++G+ I+AFA+GED++ Sbjct: 665 -----PQGRQIRQAFVVGQGYETLLTADYSQIEMRLMAHLSGDAGLIEAFASGEDLHSFV 719 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 A+AF P+ +V E R K M L Y G A + + Sbjct: 720 AAQAFGLPVSEVDPELRRRIKAMSYGLAYGLSAFGLAGQLGIAPDEAREQMDAYFARFGG 779 Query: 469 TSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTACELVK 507 F ++ + A+ + G+A +++K Sbjct: 780 VRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMAERMALNAPIQGSAADIIK 839 Query: 508 KAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A + + +L + + + G + + + Sbjct: 840 IAMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEALVRAEMGSAYEMSVPLEVS 899 Query: 562 LPSSR 566 + + R Sbjct: 900 VGAGR 904 Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 44/122 (36%), Gaps = 8/122 (6%) Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYG 594 AR + + + V+ +RR Y++ + G YL TS + R Sbjct: 762 APDEAREQMDAYFARFGGVRDFLRGVVDQARRDGYTETIMGRRRYLPDLTSDNTQRRQMA 821 Query: 595 GKLTENI-VQAISRDILCEGMK------NATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 ++ N +Q + DI+ M + ++L VHDE+V E V L Sbjct: 822 ERMALNAPIQGSAADIIKIAMLGVGRALRSRDLSSRLLLQVHDELVLEIAPGERAEVEAL 881 Query: 648 CS 649 Sbjct: 882 VR 883 >gi|311069405|ref|YP_003974328.1| DNA polymerase I [Bacillus atrophaeus 1942] gi|310869922|gb|ADP33397.1| DNA polymerase I [Bacillus atrophaeus 1942] Length = 880 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 79/481 (16%), Positives = 170/481 (35%), Gaps = 66/481 (13%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL--KNACLALNFS 119 DE+ +S ++ + GI++ + ++LA P++ A +A ++ Sbjct: 366 EDESQKKWVFDSK-RSVVALRWQGIELKGAEF--DALLAAYIINPANTYDDVASVAKDYG 422 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 H+ +E A + KG+ + P + A H+ + + + E +L Sbjct: 423 LHIVSSDE-----AVYGKGAKRAVPGENELAMHLVRKAAAVDSLREKLLQELENNDQLEL 477 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L L+ + G ++D+ + ++ E + K+ +E I ++ + Sbjct: 478 YEELELPLALILGEMESIGVKVDVGRLERMGEELGARLKEYEEKIHEIAGEPF-NINSPK 536 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L + LF G+ +V ++ T +L IL + L Sbjct: 537 QLGVILFEKLGLPVVKKTKTGYSTSADVLEKLADQHDIVSYILQYRQIGKLQSTYIEGLL 596 Query: 297 EAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + D ++ ++TGR S QN+P + Sbjct: 597 KVIRKDSHKVHTRFN-QALTQTGRLSSTDPNLQNIPIR---------------------- 633 Query: 356 PLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + S + AD + IE RVLA I+ ++ I+AF N D++ T Sbjct: 634 --LEEGRKIRQAFVPSEKDWLIFAADYSQIELRVLAHISKDENLIEAFTNDMDVHTKTAM 691 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F+ D+V+ R K + + Y G ++ ++++ ++ K Sbjct: 692 DVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLESFKGVK 751 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + + S + ++ A+ + G+A +++KKA Sbjct: 752 VYMEESVQEAKQKGYVTTLMQRRRYIPELTSRNFNLRSFAERTAMNTPIQGSAADIIKKA 811 Query: 510 W 510 Sbjct: 812 M 812 Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 496 DKLIGTACELVKKAWRAK----HQGVLQLWKDLT-EGFACVVQEGGSISARRVANVPRLV 550 + A + V A R + + G++ D + ++ + R + V Sbjct: 691 MDVFHVAQDEVTPAMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAAAFIERYLESFKGV 750 Query: 551 MRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDI 609 + V + Y+ TS+ R++ + N +Q + DI Sbjct: 751 KVYMEESVQEAKQKGYVTTLMQRR---RYIPELTSRNFNLRSFAERTAMNTPIQGSAADI 807 Query: 610 LCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 + + M + ++L VHDE++ E P + L +M Sbjct: 808 IKKAMIDMAAKLKEKQLKAKLLLQVHDELIFEAPKEEIKLLEKLVPEVM 856 >gi|118586552|ref|ZP_01543994.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] gi|118432993|gb|EAV39717.1| DNA-dependent DNA polymerase I [Oenococcus oeni ATCC BAA-1163] Length = 911 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 88/500 (17%), Positives = 170/500 (34%), Gaps = 69/500 (13%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + S +++ L + N+ E I+ LG+ I + + V + + + Sbjct: 385 ELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 443 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRANHVQAWQLFGEYCKRDVE 168 A LA F+ L E +F + + +A+ + D Sbjct: 444 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSD-H 502 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 EL++++ E L + ++ G ++D + KL + Q +L++ I + Sbjct: 503 QQAELYRQI------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEA 556 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF+ I + ++ + + + +LA+ L Sbjct: 557 GQEF-NINSPKQLADLLFVHMKIPPIKKTK--TGYSTAANVLEELAEKYPFVGLILQYRQ 613 Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KLN+ L E V+ D T ++TGR S QN+P + Sbjct: 614 LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDR---------- 663 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G ++ +D + IE RVLA + G++ KAF Sbjct: 664 --------------DEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAF 709 Query: 403 ANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 +GEDI+ T F D+ ++ +QR K + + Y G A+ Sbjct: 710 ESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGISRIEGKE 769 Query: 458 DLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKD 496 +Q + + D A +H + ++ A Sbjct: 770 IIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAERTATNT 829 Query: 497 KLIGTACELVKKAWRAKHQG 516 + G+A +++K A Q Sbjct: 830 PIQGSAADIIKIAMIKMQQA 849 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGK 596 I + + + K + ++ + + Y + + YL S+ R++ + Sbjct: 765 IEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAER 824 Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q + DI+ M + ++L VHDE++ E P + L Sbjct: 825 TATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEELV 883 >gi|331701576|ref|YP_004398535.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] gi|329128919|gb|AEB73472.1| DNA polymerase I [Lactobacillus buchneri NRRL B-30929] Length = 884 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 61/399 (15%), Positives = 133/399 (33%), Gaps = 63/399 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E + + + G ++D + + + ++++ I + + L Sbjct: 485 DIEIKIAFVLAHMEINGIKVDAATLEGMGSKFKERLAEIEQTIFQEAGEEF-NIGSPKQL 543 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 LF + ++ ++ + + + +LA D + + I KL + L Sbjct: 544 GKILFEKLRLPILKKTKTGYSTSVD--VLEKLAPDAPIVQNVLDYRQISKLQSTYVDGLL 601 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + + D T ++TGR S QN+P + Sbjct: 602 KVIHPDDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRS---------------------- 639 Query: 357 LGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R I S G ++ +D + IE RVLA I + AF NGEDI+ TT + Sbjct: 640 --EEGRLIRQAFIPSHPGWQIFSSDYSQIELRVLASITDDQNMQDAFKNGEDIHATTARR 697 Query: 416 AFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F P ++V+ E R K + + Y G A ++++ + Sbjct: 698 IFGLPSNEEVTPELRRQAKAVNFGIVYGISDFGLASNTGITRKQAHQFIERYFEEYPGVK 757 Query: 471 TF----------EDWEQAESHHL-----------WMQDQYPEFAVKDKLIGTACELVKKA 509 + + + +H ++ A+ + G+A +++K A Sbjct: 758 KYTEDIVEFARNHRYVETIAHRRRYLPDINSKSFNLRSFAERTAMNTPIQGSAADIIKIA 817 Query: 510 WRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVA 544 + ++ + + V + + +++ Sbjct: 818 MINMADAIKDMKTRMLLQVHDELIFEVPDEELDTVKQLI 856 >gi|302336109|ref|YP_003801316.1| DNA polymerase I [Olsenella uli DSM 7084] gi|301319949|gb|ADK68436.1| DNA polymerase I [Olsenella uli DSM 7084] Length = 922 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 62/369 (16%), Positives = 121/369 (32%), Gaps = 57/369 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G D + + + E + I D + L Sbjct: 521 DLEMPLLRVLLQMERTGLHADAGRLAEQSRELGSEIDCMVATIKADADEDF-NMDSPQQL 579 Query: 242 RMYLFLITGIDLVDMSEGTLK-SILSHSNITQLAK-----DLILNRLASSGSAILKLNTL 295 LF + G+ + + + LA+ +IL+ + L+ L Sbjct: 580 SHVLFDVWGLPTFGLKRTKKGFYSTNAKTLEDLAQQDGRVRMILDYRERAKIKSTYLDAL 639 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + DGR+ TL A+ TGR S QN+P + Sbjct: 640 PADIRRDGRIHTTLNQTVAA-TGRLSSSAPNLQNIPTRS--------------------- 677 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 VR+ G + D + IE R+LA ++ + + AF +G D + T A+ Sbjct: 678 ---ELGHRVRTAFTVPEGSVFLACDYSQIELRLLAHLSADGHLVGAFNSGADFHAATAAR 734 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F P+++V+ + R+ K + + Y G A + + + ++ + Sbjct: 735 VFGVPVEEVTPQLRSRAKAVNFGIVYGQQAFGLASSLRIGRAEAQEMIDRYFEAYPGVRA 794 Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D + + ++ A+ + GTA +++K A Sbjct: 795 YLDQSVDFARKRGYAVTMYGRKRHIRDINARNFQLRSFAERTAMNHPMQGTAADIIKLAM 854 Query: 511 RAKHQGVLQ 519 + + Q Sbjct: 855 VRVAERLRQ 863 >gi|183982446|ref|YP_001850737.1| DNA polymerase I PolA [Mycobacterium marinum M] gi|183175772|gb|ACC40882.1| DNA polymerase I PolA [Mycobacterium marinum M] Length = 899 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 77/408 (18%), Positives = 145/408 (35%), Gaps = 78/408 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E + + + G +DL ++ LQ A + + E + I + Sbjct: 496 LADMELPVQHVLAEMETAGIAVDLTMLGGLQSHFADQIRDAAEAAYAVIGKQI-NLGSPK 554 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ ++ H + L + RL + Sbjct: 555 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 610 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +V+ DGR+ T A+ TGR S QN+P + Sbjct: 611 --VDGLLNSVADDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 652 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R + +G +L+ AD + IE R++A ++ ++ I+AF GED+ Sbjct: 653 ---------DAGRQIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDL 703 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++AF PID+V+ E R K M L Y G + K + + Q+ Sbjct: 704 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFS 763 Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + +S + +++ A+ + G+A Sbjct: 764 RFGGVRDYLMAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 823 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A K + +LQ+ +L A +E R Sbjct: 824 DIIKVAMIEVDKALKEHALKSRMLLQVHDELLFEVAAGEREQIEALVR 871 >gi|312984114|ref|ZP_07791461.1| DNA polymerase I [Lactobacillus crispatus CTV-05] gi|310894468|gb|EFQ43543.1| DNA polymerase I [Lactobacillus crispatus CTV-05] Length = 887 Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats. Identities = 83/522 (15%), Positives = 172/522 (32%), Gaps = 95/522 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L DE + + + + LGI + + + +LA + +N Sbjct: 365 TNLRHLLEDEQIKKNVFDLKRTMVGLHR-LGIHVHGQDY--DMLLASYL---INNENNSN 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L HL K I + KG + P D +LF + V A L Sbjct: 419 DLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDDDE--------ELFNHLASK-VNAIENLK 469 Query: 175 KRLIP-LSDGER---------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + L+ L + E+ + + G +++ +L+LQ A K+L++ I Sbjct: 470 QPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKI 529 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILN 280 + + L LF + ++ ++ +++ + + + +++ Sbjct: 530 YQQAGERF-NLNSPKQLGHILFEKLNLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDY 588 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 R + + + L + + DGR+ + TGR S QN+P + Sbjct: 589 RQIAKIQST-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT------ 640 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + +G D + +E RVLA ++G+ Sbjct: 641 ------------------EEGKQIRKAFVPTNPDGYIF-SCDYSQVELRVLAHVSGDQNM 681 Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF G DI+ T + F+ D+V+ R K + + Y G +K Sbjct: 682 QEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEF 492 + + + + D + ++ Sbjct: 742 RAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERT 801 Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + G+A +++K A K + V+Q+ +L Sbjct: 802 AINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843 Score = 45.5 bits (106), Expect = 0.027, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%) Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593 IS +R ++ + + + ++R Y++ YL ++ R++ Sbjct: 738 ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797 Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 + N +Q + DI+ M N K +V+ VHDE++ + P ++ Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857 Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673 + +M +PL A+ G+ Y Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|227520124|ref|ZP_03950173.1| possible DNA polymerase I [Enterococcus faecalis TX0104] gi|227072414|gb|EEI10377.1| possible DNA polymerase I [Enterococcus faecalis TX0104] Length = 431 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 56/378 (14%), Positives = 124/378 (32%), Gaps = 60/378 (15%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D E T + L E L + + G R+D + ++Q ++ K+++E I Sbjct: 17 DSELTEKNQADLF--YKMELPLSRILGDMEITGIRVDATRLKEMQVEFSERLKEIEEKIY 74 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNR 281 + L + LF G+ ++ ++ + + + D++ R Sbjct: 75 AEAGEEF-NLNSPKQLGVILFEKMGLPVIKKTKTGYSTAVDVLEQLKEQAPIVADILTYR 133 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + + L + + D ++ ++TGR S QN+P + Sbjct: 134 QIAKIQST-YVEGLLKVIQPDNKIHTRYV-QTLTQTGRLSSVDPNLQNIPIR-------- 183 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV-VADLAGIEARVLAWIAGEDWKIK 400 +R + L+ +D + IE RVLA I+ ++ + Sbjct: 184 ----------------LEEGRKIREAFVPREDNWLIFSSDYSQIELRVLAHISNDEHLKE 227 Query: 401 AFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF G+DI+ +T + F + V+ R K + + Y G ++ Sbjct: 228 AFVEGQDIHASTAMRVFGVEKAEDVTPNMRRQAKAVNFGIVYGISDYGLSQNLGITRKQA 287 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + + + + + S + ++ A+ Sbjct: 288 QQYIDTYFEKYPGVKQYMEEIVRDAKDKGYVETLYHRRRYLSDINSRNFNLRSFAERTAI 347 Query: 495 KDKLIGTACELVKKAWRA 512 + G+A +++K A Sbjct: 348 NTPIQGSAADILKIAMIE 365 >gi|156102292|ref|XP_001616839.1| POM1 [Plasmodium vivax SaI-1] gi|148805713|gb|EDL47112.1| POM1, putative [Plasmodium vivax] Length = 1860 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 89/527 (16%), Positives = 184/527 (34%), Gaps = 76/527 (14%) Query: 10 TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVM 67 T + G+ + E+ I L A +D PV ++D + ++ + L + L++E V+ Sbjct: 1309 THCGLDIETTGLEVFDEK--IRLIQIAVEDYPVIIYDMFNITKESILTGLREVLKNEKVV 1366 Query: 68 CVAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 + N F+ L + +I + +L + + N + + L K + Sbjct: 1367 KIIQNGKFDAKFLMHNKFEVANIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVTLDKQQ 1426 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDGER 185 + + + +L E C+ ++ ++ + ++P+ D E Sbjct: 1427 QNSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKSEICRENMGTVNDIENKCILPICDMEL 1486 Query: 186 DLWLLDQTINDRGYRIDLDLV-LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMY 244 + G +DL+ + E++++ ++ + +L D I + Q L+ Sbjct: 1487 N-----------GITVDLESLSKSTNEILSELNEETSKLKAELKDEEINVNSQQQVLKAL 1535 Query: 245 LF----LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 ++ + + S+ LK+ L+H + L L +L S+ L + ++ Sbjct: 1536 QNKNVRDVSNKLIENTSDSNLKNFLNHREVVLLRNYRRLYKLYSAF-----YLKLPQHIN 1590 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ T + +GR+S Q +PRQ Sbjct: 1591 KKTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ-------------------------- 1623 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I ++AD IE ++ A I +D +KA+ N D++ T + Sbjct: 1624 --KNIREIFIPQKDNIFIIADFRQIELKIAAEITNDDIMLKAYNNNIDLHTLTASIITKK 1681 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQA 478 I V+KE R I K + L Y K A+ Q S FE ++ Sbjct: 1682 AIADVNKEDRHIAKAINFGLIYGMNYVNLKNYANTYYNLNMNLDQCLYFYNSFFEHYKGI 1741 Query: 479 ESHHLWMQDQYP------------------EFAVKDKLIGTACELVK 507 H ++ A+ + GT +++K Sbjct: 1742 YRWHNQIKQMRALEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILK 1788 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 5/81 (6%) Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDIVLTVHDE 631 Y + +++ K VQ DIL + KN I+L VHDE Sbjct: 1753 ALEYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLSLVELYKNLRPINGKIILCVHDE 1812 Query: 632 IVSETPDT-PYFSVGTLCSLM 651 I+ E ++ L M Sbjct: 1813 IIIEVDKKYQEDALKILVESM 1833 >gi|268319916|ref|YP_003293572.1| DNA polymerase I [Lactobacillus johnsonii FI9785] gi|262398291|emb|CAX67305.1| DNA polymerase I [Lactobacillus johnsonii FI9785] Length = 886 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 83/509 (16%), Positives = 168/509 (33%), Gaps = 88/509 (17%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L + L D+T+ + + + +++ ++ +LA + +N Sbjct: 366 PLRKMLEDKTIKKNVFDIKRTYVGLHR---LNLKAEGLDYDMLLASYL---VNNENNSND 419 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L HL K + + KG + P D F E+ V +L Sbjct: 420 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPDD----------NEFFEHLAAKVAVIEKLKT 469 Query: 176 RLIP-LSDGERD-LWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 L+ L D E+D L+ + + G +++ ++ +L A + ++L+ I Sbjct: 470 PLLEKLKDHEQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIY 529 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + + L LF G+ + ++ + + + QL + Sbjct: 530 QQAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILD 586 Query: 286 GSAILKLN-----TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 I K+ L E + DGR+ + TGR S QN+P + Sbjct: 587 YRQIAKIQNTYVKGLLECIQPDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT------ 639 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + S +G D + +E RVLA ++G++ Sbjct: 640 ------------------NEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHM 680 Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF +G DI+ T K F+ D+V+ R K + + Y G +K Sbjct: 681 QEAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 740 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++ + + + D S + ++ Sbjct: 741 QAKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERT 800 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A+ + G+A +++K A + + +L Sbjct: 801 AINSPIQGSAADIIKIAMINMQKKLDELH 829 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +VL VHDE++ + P ++ + +M Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 865 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 866 VK--LDVPLIAD 875 >gi|306834469|ref|ZP_07467582.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] gi|304423271|gb|EFM26424.1| DNA-directed DNA polymerase I [Streptococcus bovis ATCC 700338] Length = 878 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 56/372 (15%), Positives = 116/372 (31%), Gaps = 58/372 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E+ L + + G + + +++ +L ++I L + Sbjct: 474 LFDMEQPLANVLAKMEIAGISVKKATLQEMEASNQAVIDELTQEIYDLAGMEF-NINSPK 532 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----- 294 L LF + + + + +LA + I KL + Sbjct: 533 QLGELLFDKMQLPTSYTKKTKTGYSTAVDVLERLAPISPIVSKILEYRQIAKLQSTYIVG 592 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + + DG++ ++TGR S QN+P Sbjct: 593 LQDFILQDGKIHTRY-LQDLTQTGRLSSVDPNLQNIP----------------------- 628 Query: 355 DPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + + L+ +D + IE RVLA I+ ++ I AF G DI+ +T Sbjct: 629 -VRLEQGRLIRKAFVPETEDEVLLSSDYSQIELRVLAHISNDEHLIAAFREGADIHTSTA 687 Query: 414 AKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 + F + V+ R K + + Y G A ++ + + Sbjct: 688 MRVFGIEKTEDVTPNDRRNAKAVNFGIVYGISDYGLANNLGIPRKVAKQYIETYFERYPG 747 Query: 469 TSTFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + S + ++ A+ + G+A +++K Sbjct: 748 IKNYMERVVRDAKDKGYVETLFHRRRELPDINSRNFNIRQFAERTAINSPIQGSAADILK 807 Query: 508 KAWRAKHQGVLQ 519 A + ++ Sbjct: 808 IAMINLDKALVD 819 >gi|257469719|ref|ZP_05633811.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|317063951|ref|ZP_07928436.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] gi|313689627|gb|EFS26462.1| DNA polymerase I [Fusobacterium ulcerans ATCC 49185] Length = 908 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 82/416 (19%), Positives = 145/416 (34%), Gaps = 67/416 (16%) Query: 169 ATRELF-KRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 A E+ K L+ + + E L + + +G +ID K ++ + L + I + Sbjct: 493 AMEEIKGKDLLEVLEKTEMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLSDLQKKIFE 552 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280 + + L LF +D V ++ L + +L D IL Sbjct: 553 IAGEEF-NLNSPKQLAEVLFFKLNLDPVKKTKTGL--STDEEVLEKLKSDGVEIASYILE 609 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + ++ L + V S RL T G + TGR S QN+P Sbjct: 610 YRKYAKLKNTYVDALPKLVDSKDRLHTTFNQIGTT-TGRLSSSNPNLQNIP--------- 659 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA +G L+ D + IE RVLA ++ ++ I Sbjct: 660 ---------------VKTDEGMKIRQGFIADSGNVLMGIDYSQIELRVLAELSKDENLIA 704 Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 A+ N ED++ T K F ++VS+EQR I K + ++ Y G +K Sbjct: 705 AYKNNEDLHRVTAKKIFELGEGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGIPQKEA 764 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + ++ + FE E S + +++Q AV Sbjct: 765 TDYINRYFEQYPRVKDFERSIIDYAEKNGYTETYFGRRRIIEGIISKNKNIKNQAERMAV 824 Query: 495 KDKLIGTACELVKKAWRAKHQGV-----LQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA E++KK + + + L + + ++E R + Sbjct: 825 NSVIQGTAAEILKKVMIEIFKVIDGKEDISLLLQVHDELIFEIKEEKVEEYRTIIE 880 >gi|206603236|gb|EDZ39716.1| DNA polymerase I [Leptospirillum sp. Group II '5-way CG'] Length = 872 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 73/420 (17%), Positives = 134/420 (31%), Gaps = 73/420 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD--GIIRSSRQ 237 + E L + + G RID + +E I ++L+E+I +L I S +Q Sbjct: 473 VQSIEIPLGRILYQMEVLGVRIDRQALESARESIEALSRELEEEIYRLAGSRFTILSPKQ 532 Query: 238 TYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L+ G+ + T + L+ + + IL ++ Sbjct: 533 V---GEILYGKLGLPTARKGKTGYSTDEETLTRLSALHPLPEKILAYRQMKKLLSTYVDP 589 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 ++ + + GRL G + TGR S QN+P + Sbjct: 590 IARGIDAQGRLHGQFN-QTVTATGRLSSSNPNLQNIPMRS-------------------- 628 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 A +R C IA + L+ AD + IE R+LA + + + F EDI+ T Sbjct: 629 ----PAGREIRKCFIAGENRVLLSADYSQIELRLLAHFSEDPELMAVFERNEDIHARTAR 684 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTS 470 F P V+ E R K + + Y A + + + ++ Sbjct: 685 LLFGDP---VTPETRRKAKTINFGILYGMSAFSLSQDLGVESQEAQAFIDRYFGAFPKVG 741 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 D + + ++ AV L G+A +L+KK+ Sbjct: 742 PLFDSILEEAKKTGEVRTILGRKRRIPELFASDRRSREYGERMAVNTVLQGSAADLIKKS 801 Query: 510 W------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 R + L + + V+E A + + + + +P Sbjct: 802 MVDFGQVRKDRPEIGDLLVQVHDELLFEVREDNLDEA------SGTIRSLMEGALRLKVP 855 >gi|311895440|dbj|BAJ27848.1| putative DNA polymerase I [Kitasatospora setae KM-6054] Length = 895 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 86/569 (15%), Positives = 151/569 (26%), Gaps = 96/569 (16%) Query: 26 EQAVITL---CAYAWDDEPVKLWDRTEQ------------SAMPSDLLQYLRDETVMCVA 70 E A L ++A V+ A +L D Sbjct: 326 EDARTALAADYSWALGSGEVEQIALATGTAAAWFDPAALAEADDRAFTAWLADPKRPKAL 385 Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL---NFSEHLTKMEE 127 H + + + + LA P L L Sbjct: 386 HIAK---QVMRAFAERGWSFAGVTADTALAAYLEKPGRRAFTLDVLAEEYLGRSLAPATA 442 Query: 128 GKALIARFCKGSIDSPPYDC----TRANHVQAWQ-LFGEYCKRDVEATRELFKRLIPLSD 182 P TRA V LF D Sbjct: 443 QAETGQLSFDADEPDPTAGAQALMTRARAVHDLAGLFDTRLAEVGAVEL--------FHD 494 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + L + G D + + L+ A E ++ E+ + L+ Sbjct: 495 MELPIAELLARMERHGIAADREWLRGLEAQFAAEIQRCVEEAHAAAGREF-NLGSPKQLQ 553 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----LSEA 298 LF G+ + + L + KL T L + Sbjct: 554 EILFGDLGLPKTKKIKTGYTTDADALTWLATQTTNELPVILLRHRDQAKLRTTVEGLLKT 613 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 VS GR+ T A+ TGR S QN+P + Sbjct: 614 VSPQGRIHTTFNQMVAA-TGRLSSQDPNLQNIPVRT------------------------ 648 Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + G L+ AD + IE R++A ++ ++ I+AF +GED++ T ++ F Sbjct: 649 EEGRAIRRAFVVGEGYETLLTADYSQIELRIMAHLSEDEALIEAFTSGEDLHTTVASQVF 708 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 V E R K M L Y G ++ + + + + + Sbjct: 709 AVAPADVDAEMRRKIKAMSYGLAYGLSAYGLSQQLGIKPAEAQGLMDTYFERFGGVRDYL 768 Query: 474 DWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 E+ + ++ A+ + G+A ++VK A Sbjct: 769 HNVVEEARAVGYTETLLGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIVKIAMLR 828 Query: 513 KHQGVL------QLWKDLTEGFACVVQEG 535 + + ++ + + V G Sbjct: 829 VDEALRTAGLTSRMLLQVHDEIVLEVAPG 857 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 50/139 (35%), Gaps = 15/139 (10%) Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYG 594 A+ + + + +H V+ +R + Y++ G YL TS + R Sbjct: 746 KPAEAQGLMDTYFERFGGVRDYLHNVVEEARAVGYTETLLGRRRYLPDLTSDNRQRREMA 805 Query: 595 GKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 ++ N +Q + DI+ M + ++L VHDEIV E V L Sbjct: 806 ERMALNAPIQGSAADIVKIAMLRVDEALRTAGLTSRMLLQVHDEIVLEVAPGERERVEAL 865 Query: 648 C-SLMTKNPSWAKGLPLKA 665 M PL+A Sbjct: 866 VREQMAGA------YPLRA 878 >gi|38146967|gb|AAR11868.1| DNA polymerase I [Caldibacillus cellulovorans] Length = 903 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 64/371 (17%), Positives = 120/371 (32%), Gaps = 60/371 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + G R+D + E + + K++ +I +L + T L Sbjct: 503 DLELPLSSELAVMETVGVRVDAAALAAYGEELREAAAKVEREIYELAGTTF-NIGSTKQL 561 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT------L 295 LF G+ +V ++ + +LA + + KL + L Sbjct: 562 GEILFDKLGLPVVKKTKTG--YSTDADVLEELAPYHPIVEKILHYRQLTKLQSTYIEGLL 619 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 E G++ T + TGR S QN+P + Sbjct: 620 KEIRPQTGKIH-TYYQQTIAATGRLSSQFPNLQNIPIR---------------------- 656 Query: 356 PLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + S G ++ AD + IE RVLA ++G++ +AF G DI+ T Sbjct: 657 --LEEGRKIRKAFVPSEPGWLMLAADYSQIELRVLAHVSGDERLKEAFRTGMDIHTKTAM 714 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F D+V R K + + Y G A+ ++Q+ Sbjct: 715 DVFGVSEDRVDARMRRQAKAVNFGIIYGISDFGLAQNLNISRKEAAEFIRQYFAVFSGVK 774 Query: 471 TFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKA 509 + + ++ ++ A+ + GTA +++K A Sbjct: 775 AYRERIVEQARRDGYVTTLLGRRRYLPDINASNYNLRSFAERTAMNTPIQGTAADIIKTA 834 Query: 510 WRAKHQGVLQL 520 + + + Sbjct: 835 MVRLTRRMRDV 845 >gi|309776902|ref|ZP_07671872.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] gi|308915313|gb|EFP61083.1| DNA polymerase I [Erysipelotrichaceae bacterium 3_1_53] Length = 861 Score = 219 bits (557), Expect = 1e-54, Method: Composition-based stats. Identities = 84/579 (14%), Positives = 180/579 (31%), Gaps = 106/579 (18%) Query: 21 VWAYAEQAVI---TLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 V+A + L +A + + + + + L +L++E ++++ Sbjct: 312 VYANVDNESYYDAVLYGFAVSLKDQTEYIELQDALADTRFLAWLKEENGK-----AVYDA 366 Query: 78 ILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 F L + I ++A K+ E Sbjct: 367 KNFYHALHKNGIEFADVKFDVMIAAFL-----------VDGTLSDYDKLAEKYQFDRSLL 415 Query: 137 KGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----GERDLWLL 190 K + + + + +D+ + + + + + + E L + Sbjct: 416 KDDVFGKKGKGKLVDLDEAARYAMLQADHLQDLVSELDASLKEMEMKELFDTIEMPLTHV 475 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G L + ++ + + L I ++ + L L+ G Sbjct: 476 LYAMEKEGVVTSLSTLDEIARATSDKIDTLSAQIYEMAGMEF-NINSPKQLAQILYDELG 534 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRL 305 + + K + + +LAK + L K+ + LS+ V DG++ Sbjct: 535 L------KAGKKRSTAADVLEKLAKQHPIIPLLLEHRKYQKIYSTYAVGLSKHVLKDGKI 588 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 ++TGR S QN+ +R Sbjct: 589 HTIFNQI-QTQTGRLSSSEPNLQNIS------------------------VRDEEGKEIR 623 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 +AS G L+ AD + IE R+LA +A E+ I AF +G DI+ T + F+ D V Sbjct: 624 KAFVASEGHVLLSADYSQIELRMLAHMADEEVMIDAFNHGIDIHTKTAMQIFDVDHDSVD 683 Query: 426 KEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------- 474 R K + + Y G ++ + ++ + + +F D Sbjct: 684 ANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHAFIDKYFASYPNIKSFMDSTIQFCE 743 Query: 475 --------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW---------- 510 ++ + M++ A+ + G+A +L+K A Sbjct: 744 ENGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIHIFERMRRE 803 Query: 511 --------RAKHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + + + +W+D E +V+EG + + Sbjct: 804 QVKSRMILQIHDELIFDVWEDELEQMKSIVEEGMQQAMK 842 >gi|116490731|ref|YP_810275.1| DNA polymerase I [Oenococcus oeni PSU-1] gi|116091456|gb|ABJ56610.1| DNA polymerase I [Oenococcus oeni PSU-1] Length = 903 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 89/500 (17%), Positives = 170/500 (34%), Gaps = 69/500 (13%) Query: 51 SAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 + S +++ L + N+ E I+ LG+ I + + V + + + Sbjct: 377 ELLNSSVVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQ 435 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRANHVQAWQLFGEYCKRDVE 168 A LA F+ L E +F + + +A+ + D Sbjct: 436 LATLANRFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSD-H 494 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 EL++++ E L + ++ G ++D + KL + Q +L++ I + Sbjct: 495 QQAELYRQI------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEA 548 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF I + ++ + + + +LA+ L Sbjct: 549 GQEF-NINSPKQLADLLFAHMKIPPIKKTK--TGYSTAANVLEELAEKYPFVGLILQYRQ 605 Query: 289 ILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + KLN+ L E V+ D T ++TGR S QN+P + Sbjct: 606 LAKLNSTYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDR---------- 655 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S G ++ +D + IE RVLA + G++ KAF Sbjct: 656 --------------DEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAF 701 Query: 403 ANGEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 +GEDI+ T F D+ ++ +QR K + + Y G A+ T Sbjct: 702 ESGEDIHAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIEGKE 761 Query: 458 DLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKD 496 +Q + + D A +H + ++ A Sbjct: 762 IIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAERTATNT 821 Query: 497 KLIGTACELVKKAWRAKHQG 516 + G+A +++K A Q Sbjct: 822 PIQGSAADIIKIAMIKMQQA 841 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGK 596 I + + + K + ++ + + Y + + YL S+ R++ + Sbjct: 757 IEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAER 816 Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q + DI+ M + ++L VHDE++ E P + L Sbjct: 817 TATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEELV 875 >gi|295693393|ref|YP_003602003.1| DNA polymerase i [Lactobacillus crispatus ST1] gi|295031499|emb|CBL50978.1| DNA polymerase I [Lactobacillus crispatus ST1] Length = 887 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 83/522 (15%), Positives = 172/522 (32%), Gaps = 95/522 (18%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++L L DE + + + + LGI + + + +LA + +N Sbjct: 365 TNLRHLLEDEQIKKNVFDLKRTMVGLHR-LGIHVHGQDY--DMLLASYL---INNENNSN 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L HL K I + KG + P D +LF + V A L Sbjct: 419 DLGEIAHLYGDYSVKTDIEIYGKGKSEHVPDDDE--------ELFNHLASK-VNAIENLK 469 Query: 175 KRLIP-LSDGER---------DLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + L+ L + E+ + + G +++ +L+LQ A K+L++ I Sbjct: 470 QPLLEKLKEHEQDDLFDTIEIPTARVLARMEINGMKVEASTLLELQNEFAVRLKELEDKI 529 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILN 280 + + L LF + ++ ++ +++ + + + +++ Sbjct: 530 YQQAGERF-NLNSPKQLGHILFEKLNLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDY 588 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 R + + + L + + DGR+ + TGR S QN+P + Sbjct: 589 RQIAKIQST-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT------ 640 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + +G D + +E RVLA ++G+ Sbjct: 641 ------------------EEGKQIRKAFVPTEPDGYIF-SCDYSQVELRVLAHVSGDQNM 681 Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF G DI+ T + F+ D+V+ R K + + Y G +K Sbjct: 682 QEAFKTGYDIHSHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEF 492 + + + + D + ++ Sbjct: 742 RAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERT 801 Query: 493 AVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + G+A +++K A K + V+Q+ +L Sbjct: 802 AINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%) Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593 IS +R ++ + + + ++R Y++ YL ++ R++ Sbjct: 738 ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797 Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 + N +Q + DI+ M N K +V+ VHDE++ + P ++ Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857 Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673 + +M +PL A+ G+ Y Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|240168007|ref|ZP_04746666.1| DNA polymerase I [Mycobacterium kansasii ATCC 12478] Length = 900 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 74/414 (17%), Positives = 146/414 (35%), Gaps = 74/414 (17%) Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++A L+D E + + + G +DL L+ +LQ A + + E Sbjct: 481 AEALDAELARIDSTALLADMELPVQRVLADMERAGIAVDLRLLAELQSQFADQIRDAAEA 540 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQL 273 + I + L++ LF G+ ++ H + L Sbjct: 541 AYAVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAVQGLFEKTGHPFLQHL 599 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + RL + ++ L +V++DGR+ T A+ TGR S QN+P + Sbjct: 600 LAHRDVTRLKVT------VDGLLNSVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIR 652 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWI 392 A +R + G +L+ AD + IE R++A + Sbjct: 653 T------------------------DAGRQIRDAFVVGAGYSELMTADYSQIEMRIMAHL 688 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVF 448 +G++ I+AF GED++ ++AF PID+V+ E R K M L Y G + Sbjct: 689 SGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSTQL 748 Query: 449 KTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQD 487 K + + Q+ + + +S + +++ Sbjct: 749 KISTEEAKVQMDQYFARFGGVRDYLMAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVRE 808 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535 A+ + G+A +++K A + + ++ + + + G Sbjct: 809 AAERAALNAPIQGSAADIIKVAMIEVDKALTEAGLASRMLLQVHDELLFEIAPG 862 >gi|296164498|ref|ZP_06847069.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900098|gb|EFG79533.1| DNA-directed DNA polymerase I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 906 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 98/569 (17%), Positives = 181/569 (31%), Gaps = 92/569 (16%) Query: 16 LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAH 71 L VG AY A A D + D + P D L +L D H Sbjct: 343 LAVVGTHLAYDADATALAIVSA--DGEGRYID--TSALQPDDEAALASWLADPGPPKALH 398 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL 131 + + G + LA P + L+ ++ A Sbjct: 399 EAK---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLEDLSLRYLRRELRAETAE 455 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP---LSDGERDLW 188 + + D T VQ L +A E R+ L E + Sbjct: 456 QQQLSLLDDN----DGTDDQAVQTLILRAVAVLDLADALDEELARINSTSLLGGMELPVQ 511 Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G +DL+L+ +LQ A + + E + I + L+ LF Sbjct: 512 RVLAGMEHTGIAVDLELLGELQSDFAHQIRDAAEAAYAVIGKQI-NLGSPKQLQTVLFDE 570 Query: 249 TGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + ++ H + L + RL + ++ L + Sbjct: 571 LEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLTHRDVTRLKVT------VDGLLAS 624 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 V+SDGR+ T A+ TGR S QN+P + + Sbjct: 625 VASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA---------------------- 661 Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + +G +L+ AD + IE R++A ++ ++ I+AF GED++ ++AF Sbjct: 662 --GRRIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLHSFVASRAF 719 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF- 472 PI +V+ E R K M L Y G ++ K + + + Sbjct: 720 GVPIGEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYFARFGGVRDYL 779 Query: 473 --------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + +S + +++ A+ + G+A +++K A Sbjct: 780 MNIVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIE 839 Query: 513 KHQGVL------QLWKDLTEGFACVVQEG 535 + + ++ + + V G Sbjct: 840 VDKAIKEAGLKSRMLLQVHDELLFEVAPG 868 >gi|162456959|ref|YP_001619326.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] gi|161167541|emb|CAN98846.1| DNA polymerase I [Sorangium cellulosum 'So ce 56'] Length = 537 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 90/487 (18%), Positives = 157/487 (32%), Gaps = 69/487 (14%) Query: 3 KLFIDIETRSPQPLPK--VGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 +L +D+ S +P+ GV E QAV + + P +L S + + + Sbjct: 67 RLALDVLATSREPMSAHVCGVALACEPGQAVYVPLGHRYLGAPAQL----SMSDIDAVMG 122 Query: 59 QYLRDETVMCVAHNSLF-ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 L D + V H+ F E IL + +G+ ++LA P L Sbjct: 123 PLLADPELPKVGHDVKFCEVILLRHRIGLV----GVSFDTMLASYLLDPEGKNQLHE-LA 177 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 E KM+ RA Y + L RL Sbjct: 178 ERELGAKMQT--------LDEVAPKRRGQAQRALDEIELGEASSYGAAFADVALSLTDRL 229 Query: 178 IP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 P L E L + + G +D + +L + E L++ ++ Sbjct: 230 RPRLRVEKLEDLLVQIELPLSAVLAEMELTGVLVDPQALAQLGAQMTTELAALEQKAREI 289 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 I + L LF + ++ + L+++ + Sbjct: 290 VGHDINLA-SPKQLEAVLFDELKLRSQRKTK--TGRSTDADVLEALSEEHPFPGVVLEHR 346 Query: 288 AILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 AI KL + L V+ GR+ + TGR S QN+P + Sbjct: 347 AIAKLKGTYVDALPRLVNPGTGRIHTRWG-QAVAATGRLSSQDPNLQNIPIRT------- 398 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R +A G +V AD + IE RVLA ++ + + A Sbjct: 399 -----------------ELGRMIRRAFVAPPGSVIVSADYSQIELRVLAHLSKDPVLVDA 441 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQ 461 F G+D++V T + F V+ E R K + + Y G +A + + Sbjct: 442 FRAGQDVHVRTAMEIFGVDQAGVTAEMRRRSKTINFGVIYGMGESA---LAKRLDISRAE 498 Query: 462 FSQNVKS 468 ++ + + Sbjct: 499 AARFIDA 505 >gi|145595660|ref|YP_001159957.1| DNA polymerase I [Salinispora tropica CNB-440] gi|145304997|gb|ABP55579.1| DNA polymerase I [Salinispora tropica CNB-440] Length = 899 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 74/423 (17%), Positives = 144/423 (34%), Gaps = 78/423 (18%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D E +R+ + +++ E L + + G D + +L+ A E K + Sbjct: 482 DAELSRDGEQSARLMAEVELPLMRVLAGMERTGIAADTQYLSELEAHFAAEVKAAAQGAY 541 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILS---HSNITQLAK 275 + + L+ LF G+ + L+ + H + L + Sbjct: 542 EAVGREF-NLGSPKQLQEILFGELGLPKTKRIKTGYTTDADALQWLYGQNPHPVLGHLLR 600 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + +L ++ ++ L ++VS DGR+ T A+ TGR S QN+P + Sbjct: 601 HRDVAKLKTT------VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT- 652 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAG 394 +R + G + L+ AD + IE R++A ++ Sbjct: 653 -----------------------EEGRRIRRAFVVGTGYECLLTADYSQIEMRIMAHLSA 689 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 ++ I AF +G D + T + F P++ V+ +QR K M L Y G ++ Sbjct: 690 DEALIDAFNSGLDFHAATASSVFQVPVEAVTADQRRKIKAMNYGLAYGLSAFGLSQQLGV 749 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQY 489 A ++ + + A + + ++ Sbjct: 750 TAEEARGLMETYFAGFGGVRDYLQEVVARARRDGYTESVLGRRRYLPDLVSDNRQRREMA 809 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSIS 539 A+ + G+A +++K A V LQ+ +L A +E Sbjct: 810 ERMALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAPGEREALEAL 869 Query: 540 ARR 542 RR Sbjct: 870 VRR 872 Score = 41.6 bits (96), Expect = 0.40, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 43/125 (34%), Gaps = 9/125 (7%) Query: 537 SISARRVANVPRLVMRRHKRDVH-IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595 + AR + + + +V + R V G YL S + R Sbjct: 751 AEEARGLMETYFAGFGGVRDYLQEVVARARRDGYTESVLGRRRYLPDLVSDNRQRREMAE 810 Query: 596 KLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 ++ N +Q + DI+ M N G ++L VHDE+V E ++ L Sbjct: 811 RMALNAPIQGSAADIIKVAMMNVDAAVREAGLRSRMLLQVHDELVFEVAPGEREALEALV 870 Query: 649 SL-MT 652 M Sbjct: 871 RREMG 875 >gi|238855720|ref|ZP_04646016.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|282934757|ref|ZP_06339997.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] gi|238831666|gb|EEQ24007.1| DNA polymerase I [Lactobacillus jensenii 269-3] gi|281301168|gb|EFA93472.1| DNA-directed DNA polymerase [Lactobacillus jensenii 208-1] Length = 885 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 77/494 (15%), Positives = 156/494 (31%), Gaps = 74/494 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN----GLPSSLK 110 L L D+ V + + + + I + +LA + L Sbjct: 364 QPLQTLLEDQAVNKNVFDLKRTIVGLHR---LGIKANNINYDMLLASYLVNNENNSNDLG 420 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 C N+ + + + KG + P + NH+ L E K + Sbjct: 421 EICQLYNYYDLQPD-------VDIYGKGKKAAIPDEEIFFNHLAGKVLAIEALKPTLLKR 473 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 ++ E + + + G + D +++L Q +L+ DI L G Sbjct: 474 LTEHEQDDLYETIEMPVANVLAKMEITGLKTDASTLVQLGNDFGQRLTELEADIY-LEAG 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSG 286 + L LF + + ++ +++ + + + + + ++ R + Sbjct: 533 ERFNINSPKQLGQILFEKLELPPIKKTKTGYSTSVEVLEQLKDQSPIVQKVLDYRQIAKI 592 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + + L + + DGR+ Q + TGR S QN+P Sbjct: 593 QST-YVKGLLDVIQPDGRVHTRYQ-QTLTATGRLSSVDPNLQNIP--------------- 635 Query: 347 LNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I S +G D + +E RVLA ++G++ +AF Sbjct: 636 ---------VRLEEGKKIRKAFIPSNKDGYIF-SCDYSQVELRVLAHVSGDENMQEAFKT 685 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T K F+ D+V+ R K + + Y G +K + Sbjct: 686 GYDIHAHTAMKIFHLDSPDEVTTNMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKEFI 745 Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498 + + + D E + + ++ A+ + Sbjct: 746 DNYFEQYPKIKDYMDKEINFAREKGYVETIMHRRRYLPDIHAKNFNVRSFAERTAINSPI 805 Query: 499 IGTACELVKKAWRA 512 G A +++K A Sbjct: 806 QGGAADIIKIAMIN 819 >gi|260584166|ref|ZP_05851914.1| DNA polymerase I [Granulicatella elegans ATCC 700633] gi|260158792|gb|EEW93860.1| DNA polymerase I [Granulicatella elegans ATCC 700633] Length = 883 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 139/402 (34%), Gaps = 66/402 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + +G R+D + ++++ + K++++ I +L + L Sbjct: 483 EMELPLSDILARMEIQGIRVDQNRLIEMGLQFEERLKEIEQTIYELAGEEF-NINSPKQL 541 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296 + LF + ++ ++ + + +LA + + KLN+ L Sbjct: 542 GVILFEKMNLPVIKKTK--TGYSTAVDVLEKLASQSPIVECILEYRQLAKLNSTYVEGLQ 599 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + G++ ++TGR S QN+P + Sbjct: 600 TYIDEKGKIHTRFV-QNLTQTGRLSSQDPNLQNIPIRT---------------------- 636 Query: 357 LGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 VRS + S KL+ +D + IE RVLA +A + I+AF N DI+ T + Sbjct: 637 --EEGRQVRSAFLPSHPEWKLLSSDYSQIELRVLAHMANDVHMIEAFKNNIDIHTNTAMR 694 Query: 416 AFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F ++V+ R K + + Y G ++ + ++ + + Sbjct: 695 VFGIQNPEEVTSSMRRQAKAVNFGIVYGISDYGLSQNLNIPRKKAKEFIDRYLEEFQGVK 754 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + AE+ + ++ A+ + GTA +++K A Sbjct: 755 DYMETIVAEARQNDYVETLFHRRRYLPEIHSSNFNIRSFAERTAMNSPIQGTAADILKVA 814 Query: 510 WRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545 + + +L + + V E S + + Sbjct: 815 MIELDRELTERNFQAKLLLQVHDELIFEVPEEEVESLQSLVE 856 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654 +Q + DIL M + ++L VHDE++ E P+ S+ +L +M Sbjct: 803 IQGTAADILKVAMIELDRELTERNFQAKLLLQVHDELIFEVPEEEVESLQSLVEEVMENA 862 Query: 655 PSWAKGLPLKAE 666 S +PLKA+ Sbjct: 863 VS--LSVPLKAD 872 >gi|42519528|ref|NP_965458.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] gi|41583817|gb|AAS09424.1| DNA polymerase I [Lactobacillus johnsonii NCC 533] Length = 886 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 79/498 (15%), Positives = 165/498 (33%), Gaps = 68/498 (13%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L Q L D+T+ + + + +DI ++ +LA + +N L Sbjct: 367 LRQMLEDKTIKKNVFDIKRTYVGLHR---LDIKAEGLDYDMLLASYL---VNNENNSNDL 420 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 HL K + + KG + P D H+ A E K + + ++ Sbjct: 421 GEIAHLYDDYSVKTDLEVYGKGKKQAVPDDNDFFEHLAAKVAVIEKLKTPLLEKLKDHEQ 480 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 E + + + G +++ ++ +L A + ++L+ I + + Sbjct: 481 DDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEF-NLN 539 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN--- 293 L LF G+ + ++ + + + QL + I K+ Sbjct: 540 SPKQLGHILFEKLGLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDYRQIAKIQNTY 597 Query: 294 --TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L + + DGR+ + TGR S QN+P + Sbjct: 598 VKGLLDCIQPDGRIHTRY-LQTLTTTGRLSSVDPNLQNIPTKT----------------- 639 Query: 352 TIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + S +G D + +E RVLA ++G++ +AF +G DI+ Sbjct: 640 -------EEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQEAFKSGYDIH 691 Query: 410 VTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 T K F+ D+V+ R K + + Y G +K ++ + + Sbjct: 692 AHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIENYFE 751 Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503 + D ++ + ++ A+ + G+A Sbjct: 752 QYPQIKNYMDEAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSAA 811 Query: 504 ELVKKAWRAKHQGVLQLW 521 +++K A + + +L Sbjct: 812 DIIKIAMINMQKKLDELH 829 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +VL VHDE++ + P ++ + +M Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 865 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 866 VK--LDVPLIAD 875 >gi|227889520|ref|ZP_04007325.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227849998|gb|EEJ60084.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 886 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 83/508 (16%), Positives = 168/508 (33%), Gaps = 88/508 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L + L D+T+ + + + +++ ++ +LA + +N L Sbjct: 367 LRKMLEDKTIKKNVFDIKRTYVGLHR---LNLKAEGLDYDMLLASYL---VNNENNSNDL 420 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 HL K + + KG + P D F E+ V +L Sbjct: 421 GEVAHLYDDYSVKTDLEVYGKGKKQAVPDD----------NEFFEHLAAKVAVIEKLKTP 470 Query: 177 LIP-LSDGERD-LWL--------LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 L+ L D E+D L+ + + G +++ ++ +L A + ++L+ I + Sbjct: 471 LLEKLKDHEQDDLYETIEIPAAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQ 530 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + L LF G+ + ++ + + + QL + Sbjct: 531 QAGEEF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDY 587 Query: 287 SAILKLN-----TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 I K+ L E + DGR+ + TGR S QN+P + Sbjct: 588 RQIAKIQNTYVKGLLECIQPDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT------- 639 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + S +G D + +E RVLA ++G++ Sbjct: 640 -----------------NEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQ 681 Query: 400 KAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AF +G DI+ T K F+ D+V+ R K + + Y G +K Sbjct: 682 EAFKSGYDIHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQ 741 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 ++ + + + D S + ++ A Sbjct: 742 AKTFIENYFEQYPQIKNYMDDAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTA 801 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLW 521 + + G+A +++K A + + +L Sbjct: 802 INSPIQGSAADIIKIAMINMQKKLDELH 829 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +VL VHDE++ + P ++ + +M Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 865 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 866 VK--LDVPLIAD 875 >gi|117928295|ref|YP_872846.1| DNA polymerase I [Acidothermus cellulolyticus 11B] gi|117648758|gb|ABK52860.1| DNA polymerase I [Acidothermus cellulolyticus 11B] Length = 910 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 70/443 (15%), Positives = 147/443 (33%), Gaps = 76/443 (17%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D E RL L D E L + + G +D+D ++ L +A K ++ Sbjct: 495 DAEVAARGGARL--LRDVELPLIDVLAAMERAGIAVDVDTLVDLSAELAAHVKATEQAAY 552 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILS---HSNITQLAK 275 ++ + L+ LF + + L+++L+ H + L + Sbjct: 553 QVVGREF-NLGSPKQLQQILFEELRLPKTKRIKTGYTTDAEALQNLLAQTGHPLLEHLLR 611 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++RL ++ +++L V ++GR+ T A+ TGR S QN+P + Sbjct: 612 HRDVSRLKAT------VDSLIPMVDAEGRIHTTFNQMVAA-TGRLSSQDPNLQNIPIRT- 663 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAG 394 +R + G + L+ AD + IE R++A ++ Sbjct: 664 -----------------------AEGRRIRQAFVVGKGYEALLTADYSQIEMRIMAHLSQ 700 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 + I+AF +G D + T A F ++V E R K M L Y G ++ Sbjct: 701 DQALIEAFRSGFDFHAATAASVFGVRPEQVDAEMRRRVKAMNYGLAYGLSAYGLSQQLGI 760 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQY 489 + ++++ + + + + ++ Sbjct: 761 TPDEARVLMEEYFRRFGGVRDYLRTVVERARRDGYTETLLGRRRYLPDLTSDNRQRREMA 820 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRV 543 A+ + G+A +++K A + + +L + + V G + Sbjct: 821 ERMALNAPIQGSAADIIKVAMLGVDRALRAAGAKSRLLLQVHDELVLEVAPGERADVEEI 880 Query: 544 ANVPRLVMRRHKRDVHIVLPSSR 566 + + + R Sbjct: 881 VRREMGHAYELSVPLEVSVGVGR 903 >gi|159038912|ref|YP_001538165.1| DNA polymerase I [Salinispora arenicola CNS-205] gi|157917747|gb|ABV99174.1| DNA polymerase I [Salinispora arenicola CNS-205] Length = 899 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 76/423 (17%), Positives = 145/423 (34%), Gaps = 78/423 (18%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D E +R+ + ++ E L + ++ G D + +L+ A E K + Sbjct: 482 DAELSRDGEQSSRLMAGVELPLMRVLASMERTGIAADTQYLSELEAQFAAEVKAAAQGAY 541 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNITQLAK 275 + + L+ LF+ G+ + L + H + L + Sbjct: 542 EAVGREF-NLGSPKQLQEILFVELGLPKTKRIKTGYTTDADALQWLHAQNPHPVLGHLLR 600 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 + +L ++ ++ L ++VS DGR+ T A+ TGR S QN+P + Sbjct: 601 HRDVAKLKTT------VDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT- 652 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAG 394 +R + G + L+ AD + IE R++A ++ Sbjct: 653 -----------------------EEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSA 689 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 +D I AF +G D + T + F P+++V+ +QR K M L Y G ++ Sbjct: 690 DDVLIDAFNSGRDFHAATASSVFQVPVEEVTTDQRRKIKAMNYGLAYGLSAFGLSQQLGV 749 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQY 489 A ++ + + A + H ++ Sbjct: 750 TAEEARGLMEIYFAGFGGVRDYLQEVVARARHDGYTETVLGRRRYLPDLVSDNRQRREMA 809 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSIS 539 A+ + G+A +++K A V LQ+ +L A +E Sbjct: 810 ERMALNAPIQGSAADIIKVAMMRVDSAVHDAGLRSRMLLQVHDELVFEVAPGERERLEEL 869 Query: 540 ARR 542 RR Sbjct: 870 VRR 872 >gi|218288809|ref|ZP_03493072.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] gi|218241167|gb|EED08343.1| DNA polymerase I [Alicyclobacillus acidocaldarius LAA1] Length = 974 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 59/388 (15%), Positives = 127/388 (32%), Gaps = 64/388 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T + + + E L + + G+ ++ + ++ + + + ++ ++I L Sbjct: 562 TIRMQEMERLYQEVELPLAFVLAKMEITGFYVNREKLVAFGQELTERITRITQEIYDLAG 621 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNR 281 + L LF G+ + ++ T +L H + ++ +L + Sbjct: 622 TSF-NLNSPKQLGEILFDKLGLPALKKTKTGYSTSADVLEKLAPMHEIVQKILDYRLLAK 680 Query: 282 LASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 L S+ + L + + GR+ + TGR S QN+P + L Sbjct: 681 LQSTY-----VEGLLKVIRKETGRVHTRF-HQTLTATGRLSSSEPNLQNIPIRLEEGRRL 734 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 + + + AD + IE R+LA ++G++ I Sbjct: 735 RRVFEPTY-----------------------KDWVIFAADYSQIELRILAHLSGDEALID 771 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF DI+ T A F P ++V+ R K + + Y G A+ Sbjct: 772 AFRRDMDIHTRTAADVFEVPPEQVTSLMRRQAKAVNFGIVYGISDFGLAQNLNIPQKEAK 831 Query: 457 LDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVK 495 ++ + + + D S + ++ A+ Sbjct: 832 RFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERTAMN 891 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKD 523 + G+A +L+K A + + D Sbjct: 892 TPIQGSAADLIKLAMVRIDRAMRDAQMD 919 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 45/119 (37%), Gaps = 8/119 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A+R KR + ++ +R Y + YL S+ + R++ + Sbjct: 829 EAKRFIESYFEKFPGVKRYMDEIVKQARERGYVTTLMNRRRYLPDIHSRNYQLRSFAERT 888 Query: 598 TENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 N +Q + D++ M + ++L VHDE++ E P+ ++ L Sbjct: 889 AMNTPIQGSAADLIKLAMVRIDRAMRDAQMDARMLLQVHDELIFECPNDELAALEVLVR 947 >gi|182439320|ref|YP_001827039.1| DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467836|dbj|BAG22356.1| putative DNA polymerase I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 903 Score = 218 bits (556), Expect = 2e-54, Method: Composition-based stats. Identities = 89/540 (16%), Positives = 166/540 (30%), Gaps = 68/540 (12%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D T+ + D V HN+ + + + + LA Sbjct: 373 DPTQLEEADERAFAAWVSDPARPKVLHNAK---NVMRVFPEHGWRLEGVTMDTALAAYLV 429 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P A AL ++ A + G+ D D A L + Sbjct: 430 KPGRRSFALDALAVEYLGRELAPAAASDGQLAFGADDRAEQDALMAQARAVLDLGDAFTT 489 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 R E L D E +L + G D + +++ A ++ ++ Sbjct: 490 RLKEVGAAEL-----LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAVKEA 544 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + L+ LF G+ ++ + + L L Sbjct: 545 HAAVGREF-NLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHELPVLML 603 Query: 285 SGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 KL L + +++DGR+ T A+ TGR S QN+P + Sbjct: 604 RHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------ 656 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + L+ AD + IE RV+A ++ + I Sbjct: 657 ------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLI 698 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF +GED++ T ++ F D V E R K M L Y G ++ + Sbjct: 699 EAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEA 758 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + + + + + E+ + ++ A+ Sbjct: 759 RVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAERMAL 818 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQ---LWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 + GTA ++VK A + + + + L + +V E ++V + R M Sbjct: 819 NAPIQGTAADIVKVAMLRVDKALTEAKLTSRMLLQVHDEIVLEIAKGERQQVEEILRHEM 878 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 26/268 (9%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK A I+ T + P + + G+ + G + Sbjct: 616 EGLIKTIAADGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G + V Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVEKDAVDA 725 Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + L L+ AR + + + +H V+ +R Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARA 785 Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620 Y++ + G YL S + R ++ N +Q + DI+ M K Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLRVDKALTEAK 845 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTL 647 ++L VHDEIV E V + Sbjct: 846 LTSRMLLQVHDEIVLEIAKGERQQVEEI 873 >gi|260103165|ref|ZP_05753402.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] gi|260083024|gb|EEW67144.1| DNA-directed DNA polymerase I [Lactobacillus helveticus DSM 20075] Length = 887 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 82/509 (16%), Positives = 163/509 (32%), Gaps = 69/509 (13%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D E+ ++ L DE + + ++ LGI + +LA Sbjct: 359 VDLLEE----DNIKHILEDEKIKKNVFDLK-RSMVGAHRLGIHTHGLDY--DMLLASYL- 410 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYC 163 + +N L HL K + + KG + P D NH+ + E Sbjct: 411 --VNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESL 468 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 K+ + + ++ E + + G +++ +++LQ A + KKL++ Sbjct: 469 KKTLLEKLKDHEQDALFDTIEIPTARVLARMEMNGMKVETSTLIQLQNEFAVKLKKLEDK 528 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I + L LF G+ ++ ++ T +L IL+ Sbjct: 529 IYGQAGEKF-NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSKILD 587 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + L + + DGR+ + TGR S QN+P + Sbjct: 588 YRQIAKIQSTYVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT------ 640 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R + +G D + +E RVLA ++G+ Sbjct: 641 ------------------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNM 681 Query: 399 IKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 +AF G DI+ T K F+ D+V+ R K + + Y G +K Sbjct: 682 QEAFKTGYDIHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRK 741 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEF 492 + + + + + E+ ++ Sbjct: 742 RAQEFIDNYFEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERT 801 Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLW 521 A+ + G+A +++K A + + +L Sbjct: 802 AINSPIQGSAADIIKIAMINMQKKLDELH 830 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +V+ VHDE++ + P ++ + +M Sbjct: 807 IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSA 866 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 867 VK--LDVPLIADSGWGHNWY 884 >gi|290890151|ref|ZP_06553233.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] gi|290480195|gb|EFD88837.1| hypothetical protein AWRIB429_0623 [Oenococcus oeni AWRIB429] Length = 911 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 88/494 (17%), Positives = 168/494 (34%), Gaps = 69/494 (13%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 +++ L + N+ E I+ LG+ I + + V + + + A LA Sbjct: 391 VVRKLFKGDLPKYVFNAK-ELIVLLNRLGLQINNLDFDFLLVSYLLDTTDNDNQLATLAN 449 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPP--YDCTRANHVQAWQLFGEYCKRDVEATRELF 174 F+ L E +F + + +A+ + D EL+ Sbjct: 450 RFNVFLESDAEVYGSGVKFKIPENNETLFSHMANKASTISKLHDPSMKKLSD-HQQAELY 508 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 +++ E L + ++ G ++D + KL + Q +L++ I + + Sbjct: 509 RQI------ELPLSKVLASMEINGIKLDQAELKKLGQEFDQRIFELEKQIYEEAGQEF-N 561 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L LF I + ++ + + + +LA+ L + KLN+ Sbjct: 562 INSPKQLADLLFAHMKIPPIKKTK--TGYSTAANVLEELAEKYPFVGLILQYRQLAKLNS 619 Query: 295 -----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L E V+ D T ++TGR S QN+P + Sbjct: 620 TYVKGLLEVVNPDDSKIHTRYLQTLTQTGRLSSVDPNMQNIPDR---------------- 663 Query: 350 GETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S G ++ +D + IE RVLA + G++ KAF +GEDI Sbjct: 664 --------DEEGKRIRKAFVPSHEGWEIFGSDYSQIELRVLAHVTGDENLKKAFESGEDI 715 Query: 409 YVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T F D+ ++ +QR K + + Y G A+ T +Q + Sbjct: 716 HAATARSIFGLSTDQKITFDQRRRAKAVNFGIVYGISDFGLAQRLGTSRIEGKEIIQTYF 775 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + D A +H + ++ A + G+A Sbjct: 776 HEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAERTATNTPIQGSA 835 Query: 503 CELVKKAWRAKHQG 516 +++K A Q Sbjct: 836 ADIIKIAMIKMQQA 849 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 43/119 (36%), Gaps = 8/119 (6%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGK 596 I + + + K + ++ + + Y + + YL S+ R++ + Sbjct: 765 IEGKEIIQTYFHEFPKVKNWIDSIIALAHKQGYVETIAQRRRYLPDIHSKNFNLRSFAER 824 Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q + DI+ M + ++L VHDE++ E P + L Sbjct: 825 TATNTPIQGSAADIIKIAMIKMQQALDDNHLKAKMLLQVHDELIFEAPKQEIDILEELV 883 >gi|158604923|gb|ABW74743.1| DNA polymerase I (POL I) [Campylobacter concisus 13826] Length = 878 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 99/562 (17%), Positives = 179/562 (31%), Gaps = 103/562 (18%) Query: 2 SKLFIDI--ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLL 58 KL DI ET GV ++ A I +++++DE P + Sbjct: 306 EKLLADITPETIVAFDTETTGVD--SKSAKIVGFSFSFNDEDAYYVPVAHNYLGAPKQI- 362 Query: 59 QYLRDETVMCVA-----------HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 D A N ++ + K LG++ P + T +LA + S Sbjct: 363 ----DLKFATWAVGQIYKGCVIGQNLKYDFEIVKNNLGLN-PPANFKDTMILAWLSDPNS 417 Query: 108 SLKNACLALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTR--ANHVQAWQLFGEYCK 164 S+ LA + K E+ F +++ ++ ++ F Sbjct: 418 SVGMDALAKRLYDYDTIKFEDVVKKGQTFGDVPLENAAKYAAEDAWITLKFYKTFQNTLD 477 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++ A ++ E L + G +I+ + KL + K L +I Sbjct: 478 PNLLALADMH---------EFPFILTLFDMEQNGIKINEAKMQKLILENDTKLKALTSEI 528 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLV-------DMSEGTLKSIL-SHSNITQLAKD 276 +L+ + L + LF + E L ++ +H + ++ Sbjct: 529 YELSGENF-NINSVKQLGVILFEHLKLPTKKKTKTGYSTDESVLAELIDAHPVVGKILAY 587 Query: 277 LILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 L +L S+ L D R+ + G + TGR S QN+P + Sbjct: 588 RELYKLQSTYC-----EPLLALAKKDEGSRIYTSFLQTG-TSTGRLSSKNPNLQNIPAR- 640 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 G + VR C A G V D + IE R+LA + Sbjct: 641 -----------------------GSLAKDVRECFEAREGYSFVGLDYSQIELRLLAHFSR 677 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 + ++AF N EDI+ T F + + RA+ K + L Y G A Sbjct: 678 DPALLEAFKNDEDIHARTAISIFGSS----DGQNRAVAKSINFGLIYGMGSSKLANQVNI 733 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YP 490 + ++++ + + F + + + + + Sbjct: 734 TRAEAKEYIERYFKAFATIKEFLESIKISAKNEGFVQTLLGRKRYFDFKSATPMQMAMFE 793 Query: 491 EFAVKDKLIGTACELVKKAWRA 512 AV G+A +LVK A Sbjct: 794 REAVNTVFQGSAADLVKMAMVK 815 Score = 39.3 bits (90), Expect = 2.0, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631 G Y + ++ M+ + + + Q + D++ M ++L +HDE Sbjct: 774 GRKRYFDFKSATPMQMAMFEREAVNTVFQGSAADLVKMAMVKVRANLDKNASMLLQIHDE 833 Query: 632 IVSETPDT 639 ++ E D Sbjct: 834 LIFEVKDE 841 >gi|88809001|ref|ZP_01124510.1| DNA polymerase I [Synechococcus sp. WH 7805] gi|88786943|gb|EAR18101.1| DNA polymerase I [Synechococcus sp. WH 7805] Length = 988 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 115/656 (17%), Positives = 207/656 (31%), Gaps = 149/656 (22%) Query: 49 EQSAMP-----SDLLQYLRDETVMCVAHNSLFERILFKKT------LGIDIPSKRWICTS 97 E S +P L +L N+ ++R++ + + +D ++ + Sbjct: 433 EGSQLPLEVVLEQLAPWLSSPKHPKALQNAKYDRLILLRHGLLLGGVVMDTLLADYLRDA 492 Query: 98 VLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQ 157 + + + FS+ + K ++GKA F + ID Sbjct: 493 AAKHSLDVMAERDYGITPTVFSDLVGKPKDGKASC--FAEVPIDQAA------------- 537 Query: 158 LFGEYCKRDVEATRELFKRLIP------------LSDGERDLWLLDQTINDRGYRIDLDL 205 YC DV TR+L L L E L + + G RIDL Sbjct: 538 ---LYCAMDVHLTRKLALDLREQLQTSGQQLTNLLDRVELPLEPVLALMEATGIRIDLTY 594 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + L + + + +L+ + + + L LF G+D Sbjct: 595 LDTLSKEMGETLTRLEANAKQAAGVDFNLA-SPKQLGELLFETLGLDRKKSRRTKTGYST 653 Query: 266 SHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAV-SSDGRLRGTLQFYGASRTGR 319 + + +LA D + L + KL + L + V + GR+ + TGR Sbjct: 654 DATVLDKLADDHPVVPLVLEHRVLSKLKSTYVDALPQLVEAETGRVHTDFN-QAVTATGR 712 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P + S +R + L+ A Sbjct: 713 LSSSNPNLQNIPIRT------------------------EYSRRIRKAFLPQEHWTLLSA 748 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R+L ++GE+ +A+ +G+D++ T + D+++ ++R +GK + + Sbjct: 749 DYSQIELRILTHLSGEEVLQQAYRDGDDVHALTARLLLDK--DEITADERRLGKTINFGV 806 Query: 440 GYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLI 499 Y GA+ F A G+ + + + Sbjct: 807 IYGMGAQRF---ARETGVSQAEAKEFLSK------------------------------- 832 Query: 500 GTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVH 559 +R ++ V +L E A +I RR + Sbjct: 833 ----------YRERYPKVFAFL-ELQERLALSRGYVETILGRR------------RPFHF 869 Query: 560 IVLPSSRRLVYS--DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA 617 R L ++ D + +Q +R +Q S DI+ M Sbjct: 870 DRNGLGRLLGKDPFEIDLDVARRGGMEAQQLRAAANAP------IQGSSADIIKLAMIQL 923 Query: 618 TKNG------YDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAE 666 ++L VHDE+V E + V L S M +PL AE Sbjct: 924 QAALQQQSLPARLLLQVHDELVLEVEPSALEDVKALVVSTMETAVE--LSVPLVAE 977 >gi|253584371|ref|ZP_04861569.1| DNA polymerase I [Fusobacterium varium ATCC 27725] gi|251834943|gb|EES63506.1| DNA polymerase I [Fusobacterium varium ATCC 27725] Length = 907 Score = 218 bits (555), Expect = 2e-54, Method: Composition-based stats. Identities = 82/416 (19%), Positives = 143/416 (34%), Gaps = 67/416 (16%) Query: 169 ATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 A E+ + L L + E L + + +G +ID K ++ + L + I + Sbjct: 492 AMEEIKGKNLLEVLKETEMPLIKVLSAMERKGIKIDPVYFAKYEKELEILLNNLQKKIFE 551 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILN 280 + + L LF +D V ++ L + +L D IL Sbjct: 552 IAGEEF-NLNSPKQLAEVLFFKLNLDPVKKTKTGL--STDEEVLEKLKNDGVEIASYILE 608 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + ++ L + S RL T G + TGR S QN+P Sbjct: 609 YRKYAKLKNTYVDALPKLADSRDRLHTTFNQIGTT-TGRLSSSNPNLQNIP--------- 658 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R IA NG L+ D + IE RVLA ++ ++ I Sbjct: 659 ---------------VKTDEGMKIRQGFIADNGNVLMGIDYSQIELRVLAELSKDENLIA 703 Query: 401 AFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 A+ N ED++ T K F ++VS+EQR I K + ++ Y G +K Sbjct: 704 AYKNNEDLHRVTAKKIFELEDGEEVSREQRIIAKTINFSIIYGKTAFGLSKELGITQKEA 763 Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494 + ++ + FE E S + +++Q AV Sbjct: 764 TDYINRYFEQYPKVKDFEKSIIAYAEKNGYTETYFGRRRIIEGILSKNKNIKNQAERMAV 823 Query: 495 KDKLIGTACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 + GTA E++KK +++ + L + + ++E R Sbjct: 824 NSVIQGTAAEILKKVMIEIFKVIENKEDISLLLQVHDELIFEIKEEKVEEYRTTIE 879 >gi|327184034|gb|AEA32481.1| DNA polymerase I [Lactobacillus amylovorus GRL 1118] Length = 886 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 82/514 (15%), Positives = 170/514 (33%), Gaps = 79/514 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 ++ L DE + + R + LGI + +LA + +N Sbjct: 364 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTHGLDY--DMLLASYL---INNENNS 416 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172 L HL K + + KG + P D NH+ + E KR++ + Sbjct: 417 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKRELLKKLK 476 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ E + + G +++ +++LQ A + K+L++ I Sbjct: 477 EHEQDALFDTIEIPTACVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKF 536 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF G+ ++ ++ +++ + + + +++ R + + Sbjct: 537 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQS 595 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + DGR+ + TGR S QN+P + Sbjct: 596 T-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT-------------- 639 Query: 349 RGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + +G D + +E RVLA ++G+ +AF G Sbjct: 640 ----------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGY 688 Query: 407 DIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T K F+ D+V+ R K + + Y G +K + Sbjct: 689 DIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDN 748 Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500 + + + D E+ ++ A+ + G Sbjct: 749 YFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQG 808 Query: 501 TACELVKKAWRA----------KHQGVLQLWKDL 524 +A +++K A K + V+Q+ +L Sbjct: 809 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 842 Score = 44.7 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +V+ VHDE++ + P ++ + +M Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSA 865 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 866 VK--LDVPLIADSGWGHNWY 883 >gi|328957053|ref|YP_004374439.1| DNA polymerase I [Carnobacterium sp. 17-4] gi|328673377|gb|AEB29423.1| DNA polymerase I [Carnobacterium sp. 17-4] Length = 887 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 70/506 (13%), Positives = 167/506 (33%), Gaps = 82/506 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 D + +D+ ++ + K+ ++ +LA Sbjct: 364 DDFKNWAKDKEAQKQVFDAKRTYVALKRQ---NVDIASIDFDILLASYL----------- 409 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 LN ++ + E + S +S + + + ++ R ++A R L Sbjct: 410 -LNTKDNSKDLSEVATEHEYYEVSSDESVYGKGAKIAIPEEKTIIYDHIARKIKAIRILS 468 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 K+L ++ E L ++ + G +++ +++++E A +++ + Sbjct: 469 KQLGENLEKNEQTKLFNEMELPLSMVLAEMELTGVKVNDKRLMEMKEEFAIRLTDIEQRV 528 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 +L + L + LF G ++ ++ T +L + IL+ Sbjct: 529 YELAGEKF-NLNSPKQLGVILFEKMGYPVIKKTKTGYSTAVDVLEQLREQAPIVEHILDY 587 Query: 282 LASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + + L + + G++ ++TGR S QN+P + Sbjct: 588 RQIAKIQSTYIEGLLKVIDKKTGKIHTRY-MQTIAQTGRLSSVDPNLQNIPIR------- 639 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + S G ++ +D + IE RVL ++ + Sbjct: 640 -----------------LEEGRKIRQAFVPSHEGWEIFASDYSQIELRVLGHVSDDKLLK 682 Query: 400 KAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AF G+DI+ +T + F ++VS E R K + + Y G ++ Sbjct: 683 EAFIEGQDIHSSTAMQVFGIGSPEEVSSEMRRRAKAVNFGIVYGISDYGLSQNLGISRKE 742 Query: 455 CGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFA 493 + + + T+ + + S + ++ A Sbjct: 743 AQHFIDTYFEKYPGVKTYMEDIVREAKDKGFVETLFQRRRYLPEINSRNFNLRSFAERTA 802 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQ 519 + + G+A +++K A Q + + Sbjct: 803 INTPIQGSAADIIKIAMIKMDQKLKE 828 >gi|239931893|ref|ZP_04688846.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291440261|ref|ZP_06579651.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] gi|291343156|gb|EFE70112.1| DNA polymerase I [Streptomyces ghanaensis ATCC 14672] Length = 908 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 87/562 (15%), Positives = 167/562 (29%), Gaps = 87/562 (15%) Query: 34 AYAWDDEPVKLWDRTEQSAM-----PSDLLQY--------LRDETVMCVAHNSLFERILF 80 A+A V + P++L + L D V H++ +F Sbjct: 354 AWALGTGSVAEVALATSAGPAAWFDPAELDEADERAFAAWLADAGRPKVFHDAKSAMRVF 413 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 + + + LA P AL+ ++ + G+ Sbjct: 414 AEHGW---SIEGVTMDTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAVADGQLAFGAD 470 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + + L + R E R D E L + G Sbjct: 471 EGAEAEALMVQARAILDLGEAFGSRLEEVGAADLLR-----DMELPTSALLARMERHGIA 525 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 D + ++++ A ++ ++ + L+ LF + ++ Sbjct: 526 ADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQLQEVLFGELALPKTKRTKTG 584 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASR 316 + D L + KL L + +++DGR+ T A+ Sbjct: 585 YTTDADALAWLATQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA- 643 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P + +R + G + Sbjct: 644 TGRLSSTDPNLQNIPVRT------------------------DEGRAIRRGFVVGEGFES 679 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE RV+A ++ ++ I+AF +GED++ T A+ F V E R K M Sbjct: 680 LLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAAAQVFAVERSAVDAEMRRKIKAM 739 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------- 481 L Y G ++ A+ + + + + E+ Sbjct: 740 SYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERYGGVRDYLRRVVDEARATGYTATLFG 799 Query: 482 -----------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQL 520 + ++ A+ + GTA ++VK A + +LQ+ Sbjct: 800 RRRYLPDLSSDNRQRREAAERMALNAPIQGTAADIVKIAMLKVDGALRETDLASRMLLQV 859 Query: 521 WKDLTEGFACVVQEGGSISARR 542 ++ A + RR Sbjct: 860 HDEIVLEVAPGERPAVEELVRR 881 >gi|227510537|ref|ZP_03940586.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190189|gb|EEI70256.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 883 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 70/502 (13%), Positives = 160/502 (31%), Gaps = 72/502 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVL-ARTNGLPSSLK 110 + L TV ++ + +G+ I + +L + ++ Sbjct: 362 KQVKAILESSTVQKNVFDAK------RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + ++ + + + K ID P +H+ + D+ Sbjct: 416 DVGTVAKL-HGFANIKTDEEVYGKGAKKKID--PEAPEFFDHIVHKAKAIDQLHNDMFKA 472 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + D E + + + G +++ + + ++ + ++++ I + Sbjct: 473 LDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAGE 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + ++ ++ + + + +LA D + + + I Sbjct: 533 EF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVD--VLEKLAPDAPIVQNVLNYRQIS 589 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L + + + T ++TGR S QN+P + Sbjct: 590 KLQSTYIDGLLKVIHKNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRS----------- 638 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + S ++ +D + IE RVLA I G+ +AF Sbjct: 639 -------------EEGRLIRQAFVPSHEDWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 GEDI+ TT + F D V+ E R K + + Y G A + Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQFI 745 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 Q++ + + + S + ++ A+ + Sbjct: 746 QRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNTPI 805 Query: 499 IGTACELVKKAWRAKHQGVLQL 520 G+A +++K A + + L Sbjct: 806 QGSAADIIKIAMINMDEALKPL 827 >gi|291286346|ref|YP_003503162.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] gi|290883506|gb|ADD67206.1| DNA polymerase I [Denitrovibrio acetiphilus DSM 12809] Length = 798 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 63/373 (16%), Positives = 126/373 (33%), Gaps = 68/373 (18%) Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 L E + + + G D D++ K+ + + E ++ E I I + Sbjct: 391 LEVYLGMELPVAYCLGKMENNGIGFDKDVMAKVADKLQDEVAEISEKIKTFVGYDI-NLN 449 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKS------------ILSHSNITQLAKDLILNRLAS 284 L+++LF G++ + ++ + L + + L +L S Sbjct: 450 SPKQLQVFLFEELGVEGLKKTKTGFSTDEESLRAMIPMNPLYAHVLEDILVYRELAKLLS 509 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + + L + V +DGR+ + + G + TGR S QN+P + Sbjct: 510 TYAL-----PLKDYVLADGRIHSSFRQTG-TATGRLSSVNPNMQNIPMK----------- 552 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 G +R I G V D + IE R+LA + G++ +A+ N Sbjct: 553 -------------GKWGVKLREAFIPREGYSFVSFDYSQIELRILAHLTGDEHLKEAYRN 599 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 EDI+ T + F +KV R + K + + Y G ++ ++ Sbjct: 600 NEDIHTKTASGIFGVAPEKVDSGMRRLAKAVNFGILYGLSPFGLSRDTGVSQKEAKKFIE 659 Query: 461 QFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLI 499 ++ F + + S + + + A + Sbjct: 660 KYFATYPKVKGFIEKIAKETKEKGYAETLAGRKRFIREIRSKNRTVAMRGERIATNVPMQ 719 Query: 500 GTACELVKKAWRA 512 G+A +++K A Sbjct: 720 GSAADIIKLAMVE 732 Score = 42.0 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 9/122 (7%) Query: 539 SARRVANVPRLVMRRHKRDV-HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKL 597 A++ + K + I + + + G ++ S+ G ++ Sbjct: 653 EAKKFIEKYFATYPKVKGFIEKIAKETKEKGYAETLAGRKRFIREIRSKNRTVAMRGERI 712 Query: 598 TENI-VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSV-GTLCS 649 N+ +Q + DI+ M YD +VL VHDE+V E D + S Sbjct: 713 ATNVPMQGSAADIIKLAMVECQAVLDDKEYDALVVLQVHDELVFEVLDKDIDEFSDRVRS 772 Query: 650 LM 651 +M Sbjct: 773 IM 774 >gi|251771629|gb|EES52205.1| DNA polymerase I [Leptospirillum ferrodiazotrophum] Length = 831 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 138/395 (34%), Gaps = 66/395 (16%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + + + G + L +L+ ++ I ++ L+ +I + + Sbjct: 432 VEIPVARIIVGMEKAGIPVSLTRILEAKKTIEEKIAGLEAEIYREAGQTFSIL-SPKQVG 490 Query: 243 MYLFLITGIDLVDMS-EGTLKSILSHSNITQLAKDLILNRLASSGSAILK-----LNTLS 296 L+ G+ + +G+ + LA L +L S + K L + Sbjct: 491 EVLYGRLGLPPPRRTGKGSGAPSTDEEALEGLAALHPLPKLILSFRQLRKFLSTYLLPME 550 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 E SDGRL G A+ TGR S QN+P + Sbjct: 551 EGRGSDGRLHGQFNQTVAA-TGRLSSSRPNLQNIPART---------------------- 587 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 VR C +A G L+ AD + IE R+LA +G+ + +AF+ GEDI+ T A Sbjct: 588 --ELGLLVRRCFVAPQGGCLLSADYSQIELRLLAHFSGDPFLREAFSRGEDIHARTAALL 645 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472 F P V+ E R K + + Y A + + + ++ V + Sbjct: 646 FGEP---VTSESRRRAKTINFGILYGMSAYSLSQDLGVEPAEAQGIIDRYFSVVAGVGPY 702 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 + + E+ + +++ AV L G+A +LVKKA Sbjct: 703 FEKIREEARRTGRIRTLLGRIRPIPEIRSDNRNVREYGERMAVNSVLQGSAADLVKKAMV 762 Query: 512 AKHQGV------LQLWKDLTEGFACVVQEGGSISA 540 Q V +L + + V E + S Sbjct: 763 DLSQAVASSGLKARLLLQVHDELLFEVSEDQAESL 797 Score = 44.7 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Query: 593 YGGKLTEN-IVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVG 645 YG ++ N ++Q + D++ + M + ++ ++L VHDE++ E + S+ Sbjct: 739 YGERMAVNSVLQGSAADLVKKAMVDLSQAVASSGLKARLLLQVHDELLFEVSEDQAESLS 798 Query: 646 TLC-SLMTKNPS 656 + M Sbjct: 799 AVVRKTMEGAIP 810 >gi|224372423|ref|YP_002606795.1| DNA polymerase I [Nautilia profundicola AmH] gi|223590027|gb|ACM93763.1| DNA polymerase I [Nautilia profundicola AmH] Length = 872 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 101/626 (16%), Positives = 198/626 (31%), Gaps = 124/626 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-----SAMPSD 56 + D ET S E I ++A++ +P Sbjct: 320 KIVAFDTETDS------------LENPNIVGFSFAYEKNKAYYVPINHFYLGVTDQIPEK 367 Query: 57 ----LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA 112 +Q + D+ V+ HN F+ + KK P L + Sbjct: 368 TALKAIQKILDKKVI--GHNLKFDFKMLKKYGLEIPTPHADTMILAWILDPDSPVGLDSV 425 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 K +E F + I Q +Y D + + Sbjct: 426 AK-RYLDHQNIKFKEVIGKRKNFSEVDI----------------QEAAKYAAEDALISLK 468 Query: 173 LFKRL---------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L++ L + + E L I +G ++D++ + KLQ ++ + L ++ Sbjct: 469 LYEILKEKLWEEVKWDIENIEMPFINLLIDIESQGIKLDIEYMQKLQTETTEKLENLTQE 528 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAK 275 I + + + T L LF + + + ++ T + +L+ H I +L + Sbjct: 529 IYRYAGSEF-NIKSTKQLAHILFEVLKLPVKRKTKTGYSTDEKVLTSLKGTHPIIEKLLE 587 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 L++L S+ I+ L ++ + ++ G + TGR S QN+P Sbjct: 588 YRKLDKLLSTY--IIPLQEYAKK-DPNHKIYTNFLQTG-TATGRLSSKNPNLQNIPTSTD 643 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R +A K+ V D + IE R+LA + + Sbjct: 644 IN--------------------------IRDAFVAE--KEFVSLDYSQIELRLLAHFSKD 675 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTM 451 + I AF +DI++ T K F + +KE R + K + L Y G K Sbjct: 676 EHLINAFLEDKDIHLETAVKIFG---ENRAKEYRPVAKSINFGLIYGMGPKKLSETINVS 732 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPE 491 ++++ + + TF + + E+ + + Sbjct: 733 TKEAKEFIEKYFASFPTVKTFLENTKIEAREKGYVETLLKRRRFFDFAAANARTLANFER 792 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 AV G+A +++KKA Q + L + + A + + V Sbjct: 793 EAVNTIFQGSAADIIKKAMIEIKQRFPKAKMLLQIHDELIFEIDSRDEAYEYKKIMQNVF 852 Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDC 577 + +P + + G+ Sbjct: 853 -------KLEVPLKVGISFGKRWGEL 871 >gi|258653207|ref|YP_003202363.1| DNA polymerase I [Nakamurella multipartita DSM 44233] gi|258556432|gb|ACV79374.1| DNA polymerase I [Nakamurella multipartita DSM 44233] Length = 902 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 87/521 (16%), Positives = 165/521 (31%), Gaps = 91/521 (17%) Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF- 118 D T V H+ P C + LA LP + L + Sbjct: 382 ADPTPTKVGHDLK---TAVNALTARGWPVGGVACDTALAAYLALPGQQTFDLGDLVQRYL 438 Query: 119 -----SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 EH T + +LI + + + + + +E + Sbjct: 439 HRTLDPEHSTNAGQQLSLI-----PEENEGAQTEQDSRDMVRARAIIDLA-EALEQHLDS 492 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + L+D E + + + G +D+D + LQ A E + + Sbjct: 493 LGQKSLLADIELPVMTVLGEMERDGIAVDVDYLDDLQSTFAAEVTSAAKACYAEIGREV- 551 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----------TLKSILSHSNITQLAKDLILNRLA 283 + L++ LF G+ ++ +L H +T L + + RL Sbjct: 552 NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALVSLHEQTGHPFLTHLLRHRDVTRLK 611 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L ++V DGR+ T Q A+ TGR S QN+P + Sbjct: 612 VT------VEGLRKSVGDDGRIHTTFQQTVAA-TGRLSSTEPNLQNIPIRT--------- 655 Query: 344 IQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + L+ AD + IE R++A ++ ++ I+AF Sbjct: 656 ---------------DEGRLIRRAFVPGPQADLLLTADYSQIEMRIMATLSEDEGLIEAF 700 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 +GED++ KAF P ++V+ E R K M L Y G + K Sbjct: 701 RSGEDLHTFVAMKAFGLPAEQVTPELRRRIKAMSYGLAYGLSAYGLSGQLKISVDEAKEQ 760 Query: 459 LQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDK 497 ++ + + A + + + A+ Sbjct: 761 MEAYFSRFGGVRDYLRDTVARARKDGYTETIFGRRRYVPDLNSDNRQKRAMAERIALNAP 820 Query: 498 LIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVV 532 + G+A +++K A + + ++ + + C V Sbjct: 821 IQGSAADVIKVAMVNVQRRIRAEGLRSRMLLQVHDELVCEV 861 >gi|169334513|ref|ZP_02861706.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] gi|169259230|gb|EDS73196.1| hypothetical protein ANASTE_00916 [Anaerofustis stercorihominis DSM 17244] Length = 888 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 72/388 (18%), Positives = 136/388 (35%), Gaps = 70/388 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG-IIRSSRQT 238 + E L + + G+++DL+ + +L + + L +I + + T Sbjct: 484 YQNIEHKLMYVLGDMELEGFKVDLNTLEELGVDFDKRVEDLTRNIREAAGEDEDFNVNST 543 Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT---- 294 L LF G+ + ++ + + + +L + + I KLN+ Sbjct: 544 KQLGHVLFDKMGLPALKKTKTGYSTNIE--VLEKLRDHHPIIPMIIDLRQISKLNSTYVK 601 Query: 295 -LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + D ++ T + TGR S QN+P + Sbjct: 602 GLVSLIDKDTNKIHSTFN-QTITTTGRISSSNPNLQNIPVRT------------------ 642 Query: 353 IADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R I +S LV AD + IE RVLA I+ ++ I +F N EDI+ Sbjct: 643 ------EEGRIIRKVFISSSENNVLVDADYSQIELRVLAHISKDEKLINSFKNNEDIHTR 696 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467 T ++ FN PID+V+ E R+ K + + Y G AK + + Sbjct: 697 TASEVFNVPIDEVTSEMRSSAKAVNFGIVYGISDFGLAKGLSIARKDAKEYIDTYLSKYP 756 Query: 468 STSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + + + S + ++ A+ + G+A +++ Sbjct: 757 GVCKYMEDIVVTAKEQGYVTTMFNRRRYINEIYSKNFNVRSFGERTALNTPIQGSAADII 816 Query: 507 KKAWRA----------KHQGVLQLWKDL 524 K A K + +LQ+ +L Sbjct: 817 KLAMVNVQNELNKRKLKAKLILQVHDEL 844 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 13/123 (10%) Query: 552 RRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 + + V + + Y+N S+ R++G + N +Q + DI+ Sbjct: 760 KYMEDIVVTAKEQGYVTTMFNRR---RYINEIYSKNFNVRSFGERTALNTPIQGSAADII 816 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNPSWAKGLPL 663 M N ++L VHDE++ +TP V L M PL Sbjct: 817 KLAMVNVQNELNKRKLKAKLILQVHDELIIDTPMEEVEEVKALLKDKMENVVD--MSCPL 874 Query: 664 KAE 666 KA+ Sbjct: 875 KAD 877 >gi|166154707|ref|YP_001654825.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|166155582|ref|YP_001653837.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335980|ref|ZP_07224224.1| DNA polymerase I [Chlamydia trachomatis L2tet1] gi|165930695|emb|CAP04192.1| DNA polymerase I [Chlamydia trachomatis 434/Bu] gi|165931570|emb|CAP07146.1| DNA polymerase I [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 866 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 94/534 (17%), Positives = 175/534 (32%), Gaps = 75/534 (14%) Query: 19 VGVWAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 + E + L A + + L + D+ + S + Sbjct: 315 CAAYT-GEHLPSLQLHGVALAGANQVFYIEVSGVQEIALLKDFFADKATQFFGYRSKRDN 373 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFC 136 + + GID+ VLA + S ME G A F Sbjct: 374 HALRNS-GIDVHV---TADLVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFS 421 Query: 137 KG------SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 K + S P D + + A +L V+ + K + E+ L + Sbjct: 422 KEWGAGSLPVQSLPRDPAQYFGMFASKLLAIKNYLFVKLEEKGLKDIFE--TVEQPLEAV 479 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +D + L + +E ++ ++I LT + + L L+ G Sbjct: 480 LFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLTGCEF-NIKSPKQLSDILYQRLG 538 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 I+ VD ++ T +L IL A+ + L + +++ R+ T Sbjct: 539 IEPVDKAKSTKAEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTF 598 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI- 368 G + TGR S QN+P + +R Sbjct: 599 NQVG-TVTGRLSCQDPNLQNIPVRSER------------------------GRSLREAFR 633 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 + + + AD + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K++ Sbjct: 634 VKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQE 693 Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 R K + L Y G +K+ K S + + + F ++ Sbjct: 694 RYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQ 753 Query: 485 --------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + AV ++ G+A EL+K A + Sbjct: 754 KVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISDEMR 807 >gi|237738344|ref|ZP_04568825.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] gi|229420224|gb|EEO35271.1| DNA polymerase I [Fusobacterium mortiferum ATCC 9817] Length = 905 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 87/525 (16%), Positives = 173/525 (32%), Gaps = 100/525 (19%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT 96 +D PV + D ++ ++ + V +N K L I K Sbjct: 376 FDPTPV-VEDC---EINCKEIQEFFDNYNGEIVTYN-------LKNILNRGISVKNCKLD 424 Query: 97 SVLARTN---------GLPSSLKNACLALNFSEHLTKMEE----GKALIARFCKGSIDSP 143 ++A LP N+++ K + K C+ ++ Sbjct: 425 MMIAYHLISSQTKENVELPIEHLTGIELDNYADKFGKEKPENISAKEYGKYLCQRTMGL- 483 Query: 144 PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 ++ + + E E + L++ E L + ++ +G +ID Sbjct: 484 ---------LECYDILKE--------ELEDRNLMKVLNEIEMPLIEILSSMEIKGIKIDP 526 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + ++ + +KL E I + + L LF + V ++ T Sbjct: 527 EYFSNYEKELGDLIEKLQEKIYEEAGEEF-NINSPKQLAEILFFKLNLPPVKKTKTGLST 585 Query: 261 LKSILSH--SNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 + +L + ++AK ++ R + ++ + + R+ T G + TG Sbjct: 586 DEEVLEKLKVDGAEIAKAILEYR-KLAKLKNTYVDAIPKLRDEKDRVHTTFNQIGTT-TG 643 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P +R +A L+ Sbjct: 644 RLSSSDPNLQNIP------------------------VKTDEGIKIRQGFVAEKNSVLMG 679 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMEL 437 D + IE RVLA ++G++ +A+ N D++ T K F ++VS+E+R I K + Sbjct: 680 IDYSQIELRVLAQLSGDENLREAYQNSMDLHSLTARKIFELSDEEEVSREERIIAKTINF 739 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 ++ Y G AK + ++ FE Sbjct: 740 SIIYGKTAFGLAKELGISQKEASEYIDRYFNQYPKVKGFEKEIVEFTEKHGYTETFFGRR 799 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + S + ++ Q AV + GTA E++KK ++ + Sbjct: 800 RLIDGINSKNKNIKSQAERMAVNSVIQGTAAEIIKKVMIEIYKYI 844 Score = 41.3 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 28/211 (13%), Positives = 70/211 (33%), Gaps = 36/211 (17%) Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK---HQGVLQLWKDLTEGFACVVQ 533 AE + + M Y + ++ + E +++A++ H + +L++ + Sbjct: 670 VAEKNSVLMGIDYSQIELRVLAQLSGDENLREAYQNSMDLHSLTARKIFELSDEEEVSRE 729 Query: 534 EGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLV------YSDVKGDCSYLNTATSQL 587 E + + +++ I + + Y VKG + T + Sbjct: 730 ERIIAKTINFSIIYGKTAFGLAKELGISQKEASEYIDRYFNQYPKVKGFEKEIVEFTEKH 789 Query: 588 MRERTYGGK---------------------LTENIVQAISRDILCEGMKNA-----TKNG 621 T+ G+ +++Q + +I+ + M ++G Sbjct: 790 GYTETFFGRRRLIDGINSKNKNIKSQAERMAVNSVIQGTAAEIIKKVMIEIYKYIKDRDG 849 Query: 622 YDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 ++L VHDE++ E + +M Sbjct: 850 ISLLLQVHDELIFEIEKEKLEMYREDIEKIM 880 >gi|239940456|ref|ZP_04692393.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|239986939|ref|ZP_04707603.1| DNA polymerase I [Streptomyces roseosporus NRRL 11379] gi|291443887|ref|ZP_06583277.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] gi|291346834|gb|EFE73738.1| DNA polymerase I [Streptomyces roseosporus NRRL 15998] Length = 903 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 91/544 (16%), Positives = 169/544 (31%), Gaps = 76/544 (13%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNS-LFERILFKKTLGIDIPSKRWICTSVLARTN 103 D T+ + D V HN+ R+L + + + + LA Sbjct: 373 DPTQLEEADEQAFAAWVSDPARPKVLHNAKNVMRVLPEHGWQL----EGVTMDTALAAYL 428 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH---VQAWQLFG 160 P A AL ++ A + G+ D D A + F Sbjct: 429 VKPGRRSFALDALAVEYLGRELAPAAAADGQLAFGADDRAEQDALMAQARAVLDLGDAFT 488 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 K A L D E +L + G D + +++ A ++ Sbjct: 489 TRLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQA 540 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 ++ + L+ LF G+ ++ + + L Sbjct: 541 VKEAHAAVGREF-NLGSPKQLQEILFNELGLPKTKKTKTGYTTDADALAWLAAQTEHELP 599 Query: 281 RLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L KL L + +++DGR+ T A+ TGR S QN+P + Sbjct: 600 VLMLRHREQAKLRVTVEGLIKTIATDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT-- 656 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGE 395 +R + G + L+ AD + IE RV+A ++ + Sbjct: 657 ----------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSED 694 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF +GED++ T ++ F D V E R K M L Y G ++ Sbjct: 695 AGLIEAFTSGEDLHTTVASQVFGVEKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNID 754 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 + + + + + + E+ + ++ Sbjct: 755 PAEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAE 814 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVLQ---LWKDLTEGFACVVQEGGSISARRVANVP 547 A+ + GTA ++VK A + + + + L + +V E ++V + Sbjct: 815 RMALNAPIQGTAADIVKVAMLRVDKALTEAGLTSRMLLQVHDEIVLEIAKGERKQVEEIL 874 Query: 548 RLVM 551 R M Sbjct: 875 RHEM 878 Score = 54.4 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 26/268 (9%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK A I+ T + P + + G+ + G + Sbjct: 616 EGLIKTIATDGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G + V Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVEKDAVDA 725 Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + L L+ AR + + + +H V+ +R Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARA 785 Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620 Y++ + G YL S + R ++ N +Q + DI+ M K Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLRVDKALTEAG 845 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTL 647 ++L VHDEIV E V + Sbjct: 846 LTSRMLLQVHDEIVLEIAKGERKQVEEI 873 >gi|300361188|ref|ZP_07057365.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] gi|300353807|gb|EFJ69678.1| DNA-directed DNA polymerase I [Lactobacillus gasseri JV-V03] Length = 886 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 79/500 (15%), Positives = 165/500 (33%), Gaps = 68/500 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L Q L D+ + + + + +DI ++ +LA + +N Sbjct: 365 TPLRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYL---VNNENNSN 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 L HL K + + KG + P D H+ A + E K+ + + Sbjct: 419 DLGEVAHLYGDYSVKTDLEVYGKGKKKAVPEDDEFFEHLAAKVVVIEKLKQPLLEKLKDH 478 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 ++ E + + + G +++ ++ +L A + ++L+ I + + Sbjct: 479 EQDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFALKLQELEHKIYQQAGEEF-N 537 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN- 293 L LF + + ++ + + + QL + I K+ Sbjct: 538 LNSPKQLGHILFEKLNLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDYRQIAKIQN 595 Query: 294 ----TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L E + DGR+ + TGR S QN+P + Sbjct: 596 TYVKGLLECIQPDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 639 Query: 350 GETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + S +G D + +E RVLA ++G++ +AF +G D Sbjct: 640 ---------DEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQEAFKSGYD 689 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ T K F+ D+V+ R K + + Y G +K + + Sbjct: 690 IHAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIDNY 749 Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501 + + D E+ + ++ A+ + G+ Sbjct: 750 FEQYPQIKDYMDKAIKEAREKGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGS 809 Query: 502 ACELVKKAWRAKHQGVLQLW 521 A +++K A + + +L Sbjct: 810 AADIIKIAMINMQKKLDELH 829 Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +VL VHDE++ + P ++ + +M Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKAELDTIKKIVPEVMQSA 865 Query: 655 PSWAKGLPLKAE 666 + +PL A+ Sbjct: 866 VT--LDVPLIAD 875 >gi|86153587|ref|ZP_01071790.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842548|gb|EAQ59760.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni HB93-13] Length = 879 Score = 218 bits (554), Expect = 3e-54, Method: Composition-based stats. Identities = 91/522 (17%), Positives = 178/522 (34%), Gaps = 99/522 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + G+++ +++ T +LA + LAL + T E Sbjct: 381 IGHNLKYDFKIIQNNFGLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183 K + + +A +Y D + L PL + Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYISLRFYLYFLKNLETPLLEL 484 Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E D + + + G ++D + + L + E K L E+I L + + Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILNRLASSG-SAIL 290 + LF + + L ++L H I ++ L +L S+ +L Sbjct: 544 QVGDILFEKLKLPSGKKGKTGYSTDEKVLNALLDKHPVIAKILDYRELAKLYSTYCEPLL 603 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL + R+ + G + TGR S QN+P Sbjct: 604 KL----ALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH----------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G + +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ Sbjct: 642 -------GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHA 694 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T F + + E R++ K + L Y G ++ K A ++++ +N Sbjct: 695 RTAIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENF 750 Query: 467 KSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELV 506 S + + + ++ Y ++ L G+A +++ Sbjct: 751 TSIKKYFETVKNKAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVI 810 Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 K A ++ +LQ+ +L + E R Sbjct: 811 KLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 14/107 (13%) Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608 V + K++ I S R+ Y + ++ M+ Y + +I+Q + D Sbjct: 759 TVKNKAKQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAAD 808 Query: 609 ILCEGMKNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 ++ M K ++L +HDE++ E D + V +M Sbjct: 809 VIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855 >gi|218282129|ref|ZP_03488428.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] gi|218216922|gb|EEC90460.1| hypothetical protein EUBIFOR_01003 [Eubacterium biforme DSM 3989] Length = 858 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 64/360 (17%), Positives = 121/360 (33%), Gaps = 51/360 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + ++ G I + + L+ ++ + L + I +I + L Sbjct: 463 EIEMPLTRVLFSMEQEGISIQESFLDEYGALLNEKLETLAQQIYSHAG-MIFNINSPKQL 521 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 LF + T +L D IL S + ++ L + + S Sbjct: 522 ANVLFDELNLSSGGKKRSTSADVLEKLRGKHPIVDDILEYRKISKVSSTYIDGLKKHIRS 581 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D ++ + ++TGR S QN+ + Sbjct: 582 DQKIHTSFN-QTMTQTGRLSSSEPNLQNISIR------------------------DELG 616 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R +A G L+ AD + IE R+LA +A ED IKAF G DI+ T FN Sbjct: 617 KEIRKAFVAQEGYHLLSADYSQIELRMLAHMANEDHMIKAFNEGLDIHTKTATLIFNCSP 676 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---- 473 ++V + +R I K + + Y G + G ++ + ++ + Sbjct: 677 EEVDEHKRRIAKTVNFGIVYGQTEFGLSSQLNITRKEAGEFMKMYFESYPKIHEYMNQLI 736 Query: 474 -----------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + + ++ A+ + G+A +L+K A Q Sbjct: 737 DFCKENGYVETLFHRRREIPEINDKNFMTREFGKRAAMNAPIQGSAADLIKIAMLKMDQA 796 >gi|215426947|ref|ZP_03424866.1| DNA polymerase I [Mycobacterium tuberculosis T92] gi|215430521|ref|ZP_03428440.1| DNA polymerase I [Mycobacterium tuberculosis EAS054] gi|289750174|ref|ZP_06509552.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289753716|ref|ZP_06513094.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] gi|289690761|gb|EFD58190.1| DNA polymerase I polA [Mycobacterium tuberculosis T92] gi|289694303|gb|EFD61732.1| DNA polymerase I polA [Mycobacterium tuberculosis EAS054] Length = 904 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 76/408 (18%), Positives = 146/408 (35%), Gaps = 78/408 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E + + + G +DL ++ +LQ + + E + I + Sbjct: 501 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 559 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ ++ H + L + RL + Sbjct: 560 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 615 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +AV++DGR+ T A+ TGR S QN+P + Sbjct: 616 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 657 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 AS +R + +G +L+ AD + IE R++A ++G++ I+AF GED+ Sbjct: 658 ---------DASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 708 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++AF PID+V+ E R K M L Y G ++ K + + Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + +S + +++ A+ + G+A Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A +E R Sbjct: 829 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 876 >gi|215404071|ref|ZP_03416252.1| DNA polymerase I [Mycobacterium tuberculosis 02_1987] gi|215411274|ref|ZP_03420082.1| DNA polymerase I [Mycobacterium tuberculosis 94_M4241A] gi|215445811|ref|ZP_03432563.1| DNA polymerase I [Mycobacterium tuberculosis T85] gi|289745934|ref|ZP_06505312.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289757731|ref|ZP_06517109.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|294996578|ref|ZP_06802269.1| DNA polymerase I [Mycobacterium tuberculosis 210] gi|298525125|ref|ZP_07012534.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|289686462|gb|EFD53950.1| DNA polymerase I polA [Mycobacterium tuberculosis 02_1987] gi|289713295|gb|EFD77307.1| DNA polymerase I polA [Mycobacterium tuberculosis T85] gi|298494919|gb|EFI30213.1| DNA polymerase I polA [Mycobacterium tuberculosis 94_M4241A] gi|326903242|gb|EGE50175.1| DNA polymerase I polA [Mycobacterium tuberculosis W-148] Length = 904 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 75/408 (18%), Positives = 145/408 (35%), Gaps = 78/408 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E + + + G +DL ++ +LQ + + E + I + Sbjct: 501 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 559 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ ++ H + L + RL + Sbjct: 560 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 615 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +AV++DGR+ T A+ TGR S QN+P + Sbjct: 616 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 657 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R + +G +L+ AD + IE R++A ++G++ I+AF GED+ Sbjct: 658 ---------DAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 708 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++AF PID+V+ E R K M L Y G ++ K + + Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + +S + +++ A+ + G+A Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A +E R Sbjct: 829 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 876 >gi|294782071|ref|ZP_06747397.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] gi|294480712|gb|EFG28487.1| DNA polymerase I [Fusobacterium sp. 1_1_41FAA] Length = 916 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 91/517 (17%), Positives = 178/517 (34%), Gaps = 81/517 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNAC--- 113 L++++ + V +++N FK L + K ++A + + Sbjct: 403 LIKFISELDVKFISYN-------FKTLLNLGFTFKSMYMDMMIAYHLISSQTKMDVIIPI 455 Query: 114 -LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 N K GKA I G + + + E Sbjct: 456 TEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGL-GILAIYDEINHILHK-----EE 509 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L+ LI E L + + +G +ID+ + +E K+++ I + Sbjct: 510 LYDILI---QNEMPLIPVLSLMERKGIKIDVSYFKNYSSELEKELAKIEKSIYEEAGEEF 566 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGSA 288 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 567 -NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 625 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++TL V S+ R+ + G + TGR S QN+P + Sbjct: 626 TTYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD------------ 672 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D+ Sbjct: 673 ------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDL 720 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T + FN D V++EQR I K++ ++ Y G AK K ++++ Sbjct: 721 HDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYF 780 Query: 464 QNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + +TFE +S + ++ Q AV + GTA Sbjct: 781 EQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTA 840 Query: 503 CELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQE 534 E++KK K + + L + + V+E Sbjct: 841 AEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEE 877 Score = 45.1 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ + ++ N ++Q + ++L + M K+ ++L V Sbjct: 808 GRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQV 867 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E ++ + +M Sbjct: 868 HDELIFEVEESSVEKYSEILADIM 891 >gi|62327352|ref|YP_224065.1| hypothetical protein BPKS7gp43 [Salmonella phage SS3e] gi|57472386|gb|AAW51248.1| hypothetical protein [Salmonella phage SS3e] Length = 306 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 92/286 (32%), Positives = 122/286 (42%), Gaps = 45/286 (15%) Query: 435 MELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA- 493 EL LGY+GG F T A + GLDL + ++ + T W + W + Q + Sbjct: 21 CELGLGYEGGVGAFVTFAKNLGLDLIEMAKTMDGTFPDHIWAATARGYEWARIQEAKRPP 80 Query: 494 -----------VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISA-- 540 + DK + C+ +K+ WR H + W+DL +G V+ G Sbjct: 81 HPGEKDDRPSYILDKKVWRTCDAIKRMWRESHPETVAFWRDLKDGILAAVRNPGREFWAG 140 Query: 541 -------RRVANVPRLVMRRHKR------DVHIVLPSSRRLVYS---------------- 571 R + R V + + LPS R L Y Sbjct: 141 AHLRRNGERAIRIWRTVEFDSSGRKVPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRI 200 Query: 572 --DVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVH 629 +V+ N T Q T+GGK ENIVQA+ RD+L M N GY IVL+VH Sbjct: 201 NTNVRIKYQGENQLTRQWTTLYTHGGKACENIVQALCRDLLAYAMLNVEAGGYPIVLSVH 260 Query: 630 DEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 DE+V ETPDT ++V L LM P WA G PL AEG E KRY K Sbjct: 261 DELVCETPDTSDYTVAELEKLMCALPEWADGFPLVAEGAELKRYAK 306 >gi|21220485|ref|NP_626264.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|256788382|ref|ZP_05526813.1| DNA polymerase I [Streptomyces lividans TK24] gi|289772274|ref|ZP_06531652.1| DNA polymerase I [Streptomyces lividans TK24] gi|5689896|emb|CAB52059.1| DNA polymerase I [Streptomyces coelicolor A3(2)] gi|289702473|gb|EFD69902.1| DNA polymerase I [Streptomyces lividans TK24] Length = 907 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 82/561 (14%), Positives = 164/561 (29%), Gaps = 83/561 (14%) Query: 34 AYAWDDEPVKLWDRTEQSAM-----PSDLLQY--------LRDETVMCVAHNSLFERILF 80 +A V P++L + L D V HN+ + Sbjct: 353 TWALGTGSVTEVALAASDGKAAWFDPTELDEADETAFRSWLSDPDRPKVFHNAKGAMRVL 412 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSI 140 + + LA P AL+ ++ A + G+ Sbjct: 413 AEHGW---SVAGVGMDTALAAYLVKPGRRSFDLDALSLEYLHRELAPAAAADGQLAFGAD 469 Query: 141 DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 + + L + R + R D E L + G Sbjct: 470 EGAEAEVLMVQARAILDLGETFESRLADVGAADLLR-----DMELPTSALLARMERHGIA 524 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 D + + ++++ A ++ ++ + L+ LF + ++ Sbjct: 525 ADREHLQAMEQMFAGAVQQAVKEAHAAAGREF-NLGSPKQLQEVLFGELNLPKTKKTKTG 583 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASR 316 + D L + KL L + +++DGR+ T A+ Sbjct: 584 YTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA- 642 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KK 375 TGR S QN+P + +R + G + Sbjct: 643 TGRLSSTDPNLQNIPVRT------------------------DEGRAIRRGFVVGEGFES 678 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE RV+A ++ + +AF +GED++ T A+ F+ V E R K M Sbjct: 679 LMTADYSQIELRVMAHLSEDAGLTEAFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAM 738 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------- 481 L Y G ++ A+ + + + + E+ Sbjct: 739 SYGLAYGLSAFGLSQQLNIEAAEARGLMDAYFERFGGVRDYLRRVVDEARATGYTATLFG 798 Query: 482 -----------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDL 524 + ++ A+ + GTA ++VK A + + ++ + Sbjct: 799 RRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDKALREADLKSRMLLQV 858 Query: 525 TEGFACVVQEGGSISARRVAN 545 + + G +A + Sbjct: 859 HDEIVLEIAPGERAAAEELVR 879 >gi|319957123|ref|YP_004168386.1| DNA polymerase i [Nitratifractor salsuginis DSM 16511] gi|319419527|gb|ADV46637.1| DNA polymerase I [Nitratifractor salsuginis DSM 16511] Length = 904 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 99/529 (18%), Positives = 166/529 (31%), Gaps = 97/529 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 V N F+ L L ++ T +LA S + LA F + K + Sbjct: 398 VGQNLKFDLSLLYSHLEMEPIEPE-ADTMILAWLLDPGSRVGLDILAQKFLGYQMKSFKE 456 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-------- 180 K D + Y D ATR+L+ RL L Sbjct: 457 TV------KKGEDFSSVA---------LEEAAFYAAEDAWATRQLYFRLTELFKKGGLEH 501 Query: 181 -----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E + + G R+D + L+E ++ E +L ++I L + Sbjct: 502 LLKEAKEVEFPFINVLIAMERLGIRVDTKHLRSLKEELSAELARLTQEIHTLAGTEF-NI 560 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 + T L LF G+ ++ T +S+L + + IL + Sbjct: 561 KSTQQLGNVLFGTLGLKGGKKTKTGYSTNESVLRNLIGEHPIVEKILEYREHQKMLSTYV 620 Query: 293 NTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L + D GR+ T G + TGR + QN+P + Sbjct: 621 DPLLKLAEKDPEGRIHTTFVQTG-TATGRLASKDPNLQNIPVRS---------------- 663 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 VR +A G +L D + IE R+LA +G+ +AF GEDI++ Sbjct: 664 --------ELGRRVRRAFVAQEGFRLASIDYSQIELRLLAHFSGDAALREAFEKGEDIHM 715 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T K F P + +K R K + L Y G A ++ + Sbjct: 716 ATAIKLFG-PEEAAAK--RNFAKSINFGLLYGMGSRKLADELGITTKEAKEIIEAYFAAF 772 Query: 467 KSTSTFEDWEQAESHHL--------------------WMQDQYPEFAVKDKLIGTACELV 506 + ++ + Q ++ M+ AV G+A +L+ Sbjct: 773 PTVRSYLEQIQQQAKEQGYVETLLRRRRVFDYEGASGMMKAAILREAVNTVFQGSAADLI 832 Query: 507 KKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISARRVAN 545 K A + LQ+ +L E + R Sbjct: 833 KLAMLDIDTMIREEGLEARMLLQIHDELIFEIPEAQAEETAARFRHTME 881 >gi|326779972|ref|ZP_08239237.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] gi|326660305|gb|EGE45151.1| DNA polymerase I [Streptomyces cf. griseus XylebKG-1] Length = 903 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 83/508 (16%), Positives = 154/508 (30%), Gaps = 71/508 (13%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D T+ + D V HN+ + + + + LA Sbjct: 373 DPTQLEEADERAFAAWVSDPARPKVLHNAK---NVMRVFPEHGWRLEGVTMDTALAAYLV 429 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH---VQAWQLFGE 161 P A AL ++ A + G+ D D A + F Sbjct: 430 KPGRRSFALDALAVEYLGRELAPAAASDGQLAFGADDRAEQDALMAQARAVLDLGDAFTT 489 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 K A L D E +L + G D + +++ A ++ Sbjct: 490 RLKEVGAAEL--------LHDMELPTSILLARLERHGIAADRAHLEGMEQQFAGTVQQAV 541 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ + L+ LF G+ ++ + + L Sbjct: 542 KEAHAAVGREF-NLGSPKQLQEILFGELGLPKTKKTKTGYTTDADALAWLAAQTEHELPV 600 Query: 282 LASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 L KL L + +++DGR+ T A+ TGR S QN+P + Sbjct: 601 LMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT--- 656 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396 +R + G + L+ AD + IE RV+A ++ + Sbjct: 657 ---------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDA 695 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+AF +GED++ T ++ F D V E R K M L Y G ++ Sbjct: 696 GLIEAFTSGEDLHTTVASQVFGVGKDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDP 755 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + + + + + + E+ + ++ Sbjct: 756 AEARVLMDTYFERFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAER 815 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQ 519 A+ + GTA ++VK A + + + Sbjct: 816 MALNAPIQGTAADIVKVAMLRVDKALTE 843 Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 47/268 (17%), Positives = 86/268 (32%), Gaps = 26/268 (9%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK A I+ T + P + + G+ + G + Sbjct: 616 EGLIKTIAADGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G + V Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVGKDAVDA 725 Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + L L+ AR + + + +H V+ +R Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDPAEARVLMDTYFERFGGVRDYLHRVVEEARA 785 Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620 Y++ + G YL S + R ++ N +Q + DI+ M K Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLRVDKALTEAK 845 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTL 647 ++L VHDEIV E V + Sbjct: 846 LTSRMLLQVHDEIVLEIAKGERKQVEEI 873 >gi|15608767|ref|NP_216145.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|15841084|ref|NP_336121.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31792815|ref|NP_855308.1| DNA polymerase I [Mycobacterium bovis AF2122/97] gi|121637536|ref|YP_977759.1| DNA polymerase I [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661424|ref|YP_001282947.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148822836|ref|YP_001287590.1| DNA polymerase I [Mycobacterium tuberculosis F11] gi|167968418|ref|ZP_02550695.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|218753335|ref|ZP_03532131.1| DNA polymerase I [Mycobacterium tuberculosis GM 1503] gi|224990011|ref|YP_002644698.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253799333|ref|YP_003032334.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|254231830|ref|ZP_04925157.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|254364479|ref|ZP_04980525.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|260186577|ref|ZP_05764051.1| DNA polymerase I [Mycobacterium tuberculosis CPHL_A] gi|260204898|ref|ZP_05772389.1| DNA polymerase I [Mycobacterium tuberculosis K85] gi|289447237|ref|ZP_06436981.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289574296|ref|ZP_06454523.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289761777|ref|ZP_06521155.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|297634182|ref|ZP_06951962.1| DNA polymerase I [Mycobacterium tuberculosis KZN 4207] gi|297731169|ref|ZP_06960287.1| DNA polymerase I [Mycobacterium tuberculosis KZN R506] gi|306775815|ref|ZP_07414152.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|306779627|ref|ZP_07417964.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|306784359|ref|ZP_07422681.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|306788727|ref|ZP_07427049.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|306793064|ref|ZP_07431366.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|306797446|ref|ZP_07435748.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|306803324|ref|ZP_07439992.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|306807906|ref|ZP_07444574.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|306967723|ref|ZP_07480384.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|306971921|ref|ZP_07484582.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|307084209|ref|ZP_07493322.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|313658501|ref|ZP_07815381.1| DNA polymerase I [Mycobacterium tuberculosis KZN V2475] gi|61223052|sp|P0A550|DPO1_MYCTU RecName: Full=DNA polymerase I; Short=POL I gi|61223053|sp|P0A551|DPO1_MYCBO RecName: Full=DNA polymerase I; Short=POL I gi|416117|gb|AAB46393.1| DNA polymerase I [Mycobacterium tuberculosis H37Rv] gi|2113913|emb|CAB08882.1| PROBABLE DNA POLYMERASE I POLA [Mycobacterium tuberculosis H37Rv] gi|13881298|gb|AAK45935.1| DNA polymerase I [Mycobacterium tuberculosis CDC1551] gi|31618405|emb|CAD96323.1| DNA polymerase I polA [Mycobacterium bovis AF2122/97] gi|121493183|emb|CAL71654.1| DNA polymerase I polA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600889|gb|EAY59899.1| DNA polymerase I polA [Mycobacterium tuberculosis C] gi|134149993|gb|EBA42038.1| DNA polymerase I polA [Mycobacterium tuberculosis str. Haarlem] gi|148505576|gb|ABQ73385.1| DNA polymerase I [Mycobacterium tuberculosis H37Ra] gi|148721363|gb|ABR05988.1| DNA polymerase I polA [Mycobacterium tuberculosis F11] gi|224773124|dbj|BAH25930.1| DNA polymerase I [Mycobacterium bovis BCG str. Tokyo 172] gi|253320836|gb|ACT25439.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 1435] gi|289420195|gb|EFD17396.1| DNA polymerase I polA [Mycobacterium tuberculosis CPHL_A] gi|289538727|gb|EFD43305.1| DNA polymerase I polA [Mycobacterium tuberculosis K85] gi|289709283|gb|EFD73299.1| DNA polymerase I polA [Mycobacterium tuberculosis GM 1503] gi|308215730|gb|EFO75129.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu001] gi|308327428|gb|EFP16279.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu002] gi|308330907|gb|EFP19758.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu003] gi|308334742|gb|EFP23593.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu004] gi|308338519|gb|EFP27370.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu005] gi|308342190|gb|EFP31041.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu006] gi|308345716|gb|EFP34567.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu007] gi|308350015|gb|EFP38866.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu008] gi|308354652|gb|EFP43503.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu009] gi|308358608|gb|EFP47459.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu010] gi|308366154|gb|EFP55005.1| DNA polymerase I polA [Mycobacterium tuberculosis SUMu012] gi|323719889|gb|EGB29002.1| DNA polymerase I polA [Mycobacterium tuberculosis CDC1551A] gi|328459083|gb|AEB04506.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 4207] gi|740010|prf||2004291B DNA polymerase I Length = 904 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 75/408 (18%), Positives = 145/408 (35%), Gaps = 78/408 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E + + + G +DL ++ +LQ + + E + I + Sbjct: 501 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 559 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ ++ H + L + RL + Sbjct: 560 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 615 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +AV++DGR+ T A+ TGR S QN+P + Sbjct: 616 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 657 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R + +G +L+ AD + IE R++A ++G++ I+AF GED+ Sbjct: 658 ---------DAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 708 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++AF PID+V+ E R K M L Y G ++ K + + Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + +S + +++ A+ + G+A Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A +E R Sbjct: 829 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 876 >gi|325957304|ref|YP_004292716.1| DNA polymerase I [Lactobacillus acidophilus 30SC] gi|325333869|gb|ADZ07777.1| DNA polymerase I [Lactobacillus acidophilus 30SC] Length = 887 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 80/514 (15%), Positives = 168/514 (32%), Gaps = 79/514 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 ++ L DE + + R + LGI + +LA + +N Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTHGLDY--DMLLASYL---INNENNS 417 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172 L HL K + + KG + P D NH+ + E K ++ + Sbjct: 418 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKPELLKKLK 477 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ E + + G +++ +++LQ + K+L++ I Sbjct: 478 EHEQDALFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFTVKLKELEDKIYGQAGEKF 537 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSA 288 + L LF G+ ++ ++ +++ + + + +++ R + + Sbjct: 538 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQS 596 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + DGR+ + TGR S QN+P + Sbjct: 597 T-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT-------------- 640 Query: 349 RGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + +G D + +E RVLA ++G+ +AF G Sbjct: 641 ----------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGY 689 Query: 407 DIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T K F+ D+V+ R K + + Y G +K + Sbjct: 690 DIHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDN 749 Query: 462 FSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIG 500 + + + D E+ ++ A+ + G Sbjct: 750 YFEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQG 809 Query: 501 TACELVKKAWRA----------KHQGVLQLWKDL 524 +A +++K A K + V+Q+ +L Sbjct: 810 SAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843 Score = 44.7 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +V+ VHDE++ + P ++ + +M Sbjct: 807 IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSA 866 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 867 VK--LDVPLIADSGWGHNWY 884 >gi|315444483|ref|YP_004077362.1| DNA polymerase I [Mycobacterium sp. Spyr1] gi|315262786|gb|ADT99527.1| DNA polymerase I [Mycobacterium sp. Spyr1] Length = 908 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 89/501 (17%), Positives = 164/501 (32%), Gaps = 88/501 (17%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D V H + + G + LA P S L+L + Sbjct: 390 LADPHVPKALHEAK---LAIHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRY 446 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K + D + QA Q V+ L + L Sbjct: 447 L---------KRELRADNPEQQQLSLLDDSDGVDDQAVQTLLLRASAVVDLADALDEELS 497 Query: 179 P------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L + E + + + G +DL+++ LQ A + + E + I Sbjct: 498 RIDSSALLGNMELPVQRVLAELETAGIAVDLEMLSGLQSEFADQIRDAAEAAYAVIGKQI 557 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRL 282 + L++ LF + ++ H + L RL Sbjct: 558 -NLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRL 616 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + ++ L AV+SDGR+ T A+ TGR S QN+P + + Sbjct: 617 KVT------VDGLLNAVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------ 663 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKA 401 +R + +G +L+ AD + IE R++A ++ ++ I+A Sbjct: 664 ------------------GRRIRDAFVVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEA 705 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F GED++ ++AF+ PID+V+ E R K M L Y G ++ K Sbjct: 706 FNTGEDLHSFVASRAFSVPIDEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKE 765 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 ++Q+ + + +S + +++ A+ Sbjct: 766 QMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNA 825 Query: 497 KLIGTACELVKKAWRAKHQGV 517 + G+A +++K A Q + Sbjct: 826 PIQGSAADIIKVAMINVDQAI 846 >gi|57237389|ref|YP_178402.1| DNA polymerase I [Campylobacter jejuni RM1221] gi|57166193|gb|AAW34972.1| DNA polymerase type I [Campylobacter jejuni RM1221] gi|315057758|gb|ADT72087.1| DNA polymerase I [Campylobacter jejuni subsp. jejuni S3] Length = 879 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 89/520 (17%), Positives = 169/520 (32%), Gaps = 95/520 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + +++ +++ T +LA + LAL + T E Sbjct: 381 IGHNLKYDFKIIQNNFDLNL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE-----LFKRLIPLSDG 183 K + + +A +Y D T L PL + Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLETPLLEL 484 Query: 184 ----ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E D + + + G ++D + + L + E K L E+I L + + Sbjct: 485 AKNCEFDFIKIIMMMEENGIKLDTNALEILMKKFENEIKNLSEEIYTLCEDRF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 + LF + L +G + L + KL Sbjct: 544 QVGDILFEK--LKLPSRKKGKTGYSTDEKVLNALLDKHPAITKILDYRELAKLYSTYCEP 601 Query: 295 LSEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + D R+ + G + TGR S QN+P Sbjct: 602 LLKLALKDKNSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH------------------- 641 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 G + +SC +A +G + D + IE R+LA + ++ + AFAN EDI+ T Sbjct: 642 -----GQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKLLNAFANDEDIHART 696 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468 F + + E R++ K + L Y G ++ K A ++++ +N S Sbjct: 697 AIMIFG----ESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAKSYIEKYFENFTS 752 Query: 469 TSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTACELVKK 508 + + + E+ Y ++ L G+A +++K Sbjct: 753 IKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESINSILQGSAADVIKL 812 Query: 509 AWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 A ++ +LQ+ +L + E R Sbjct: 813 AMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTR 852 Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 14/101 (13%) Query: 555 KRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGM 614 K++ I S R+ Y + ++ M+ Y + +I+Q + D++ M Sbjct: 765 KQNGFITTLSGRK----------RYFDFENAKPMQIAMYERESINSILQGSAADVIKLAM 814 Query: 615 KNATKN---GYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 K ++L +HDE++ E D + V +M Sbjct: 815 LEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIM 855 >gi|323466097|gb|ADX69784.1| DNA polymerase I [Lactobacillus helveticus H10] Length = 887 Score = 217 bits (553), Expect = 4e-54, Method: Composition-based stats. Identities = 83/523 (15%), Positives = 173/523 (33%), Gaps = 81/523 (15%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D E+ ++ L DE + + ++ LGI + +LA Sbjct: 359 VDLLEE----DNIKHILEDEKIKKNVFDLK-RSMVGAHRLGIHTHGLDY--DMLLASYL- 410 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYC 163 + +N L HL K + + KG + P D NH+ + E Sbjct: 411 --VNNENNSNDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESL 468 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 K+ + + ++ E + + G +++ +++LQ A + + L++ Sbjct: 469 KKTLLEKLKDHEQDDLFDTIEIPTARVLAKMEINGMKVEASTLIQLQNEFAVKLQDLEKK 528 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLIL 279 I + + L LF G+ ++ ++ +++ + + + K+++ Sbjct: 529 IYQQAGEEF-NLNSPKQLGHILFEKLGLPVLKKTKTGYSTSVEVLDQLKTQSPIVKEILD 587 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 R + + + L + + DGR+ + TGR S QN+P + Sbjct: 588 YRQIAKIQST-YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT----- 640 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + +G D + +E RVLA ++G+ Sbjct: 641 -------------------EEGKQIRKAFVPSDPDGYIF-SCDYSQVELRVLAHVSGDVH 680 Query: 398 KIKAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 +AF G DI+ T K F+ DKV+ R K + + Y G +K Sbjct: 681 MQEAFKTGYDIHSHTAMKIFHLDSPDKVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISR 740 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPE 491 + + + + D E+ ++ Sbjct: 741 KQAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKYTVRAFAER 800 Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 A+ + G+A +++K A K + V+Q+ +L Sbjct: 801 TAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843 Score = 44.7 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 55/149 (36%), Gaps = 15/149 (10%) Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593 IS ++ ++ K + + +R Y++ YL ++ R + Sbjct: 738 ISRKQAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKYTVRAF 797 Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 + N +Q + DI+ M N K +V+ VHDE++ + P ++ Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKK 857 Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673 + +M +PL A+ G+ Y Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|289554597|ref|ZP_06443807.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] gi|289439229|gb|EFD21722.1| DNA polymerase I polA [Mycobacterium tuberculosis KZN 605] Length = 903 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 75/408 (18%), Positives = 145/408 (35%), Gaps = 78/408 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E + + + G +DL ++ +LQ + + E + I + Sbjct: 500 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 558 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ ++ H + L + RL + Sbjct: 559 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 614 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +AV++DGR+ T A+ TGR S QN+P + Sbjct: 615 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 656 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R + +G +L+ AD + IE R++A ++G++ I+AF GED+ Sbjct: 657 ---------DAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 707 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++AF PID+V+ E R K M L Y G ++ K + + Sbjct: 708 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 767 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + +S + +++ A+ + G+A Sbjct: 768 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 827 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A +E R Sbjct: 828 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 875 >gi|331697374|ref|YP_004333613.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] gi|326952063|gb|AEA25760.1| DNA polymerase I [Pseudonocardia dioxanivorans CB1190] Length = 939 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 90/530 (16%), Positives = 171/530 (32%), Gaps = 85/530 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D V +H+ + G + LA P S A LAL + Sbjct: 420 LADPAVPKASHDVK---AVLHALRGRGWTLAGLTSDTALAAYLAKPGQRSFDLADLALRY 476 Query: 119 SEHLTKMEEGKALIARFC----KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 M EG + + D D +L E + Sbjct: 477 LRRELAM-EGAPADGQLSLLGGEEEADRAHADAEMVAASAVAELADALGAELAEKEQNGL 535 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 L + E+ L + + G +D + L+ A + + +D + I + Sbjct: 536 -----LLELEQPLAFVLADLEAAGIAVDRANLESLEAEFAGQVAQAAQDAYAVIGKEI-N 589 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILS------HSNITQLAKDLILNRLASSGSA 288 L++ LF G+ ++ + + + L+L+R + Sbjct: 590 LGSPKQLQVVLFDELGMPKTKRTKTGYTTDADALAGLFEQTGHEFLQHLLLHR--DATRL 647 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + ++ L +++++DGR+ T A+ TGR S QN+P + Sbjct: 648 KVTVDGLLKSIAADGRIHTTYSQTIAA-TGRLSSTEPNLQNVPIRT-------------- 692 Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 A +R+ + +G +L+ AD + IE R++A ++ + I+AF + D Sbjct: 693 ----------AAGRRIRTAFVVGDGFSQLMTADYSQIEMRIMAHLSEDAALIEAFRSQRD 742 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T +K F VS EQRA K M L Y G + + + + Sbjct: 743 FHSETASKVFGVDAADVSPEQRAKIKAMNYGLAYGLSAFGLSGQLRISTEEARGLMDDYF 802 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + S + ++ A+ + G+A Sbjct: 803 ETFGGVRDYLRSIVDVARKDGYTATMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGSA 862 Query: 503 CELVKKAWRAKH----------QGVLQLWKDLTEGFACVVQEGGSISARR 542 +++K A H + +LQ+ +L A ++ RR Sbjct: 863 ADIIKVAMLRVHAALQAEGLRSRMLLQVHDELVLEVADGERDAVDALVRR 912 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 48/127 (37%), Gaps = 9/127 (7%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGG 595 + AR + + + + ++ +R+ Y + + G YL TS + R Sbjct: 791 TEEARGLMDDYFETFGGVRDYLRSIVDVARKDGYTATMLGRRRYLPDLTSDNRQRREMAE 850 Query: 596 KLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 ++ N +Q + DI+ M G ++L VHDE+V E D +V L Sbjct: 851 RMALNAPIQGSAADIIKVAMLRVHAALQAEGLRSRMLLQVHDELVLEVADGERDAVDALV 910 Query: 649 SL-MTKN 654 M Sbjct: 911 RREMAAA 917 >gi|194017403|ref|ZP_03056015.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] gi|194011271|gb|EDW20841.1| DNA polymerase I (POL I) [Bacillus pumilus ATCC 7061] Length = 879 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 88/514 (17%), Positives = 176/514 (34%), Gaps = 72/514 (14%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L +A +E + E + ++++DET +S + + D+ K Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSDAFKEWVQDETKKKWVFDSKRAVVALR---WHDVDLK 391 Query: 92 RWICTSVLARTNGLP--SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 +LA P S A +A + ++ +E + KG+ + P + Sbjct: 392 GVDNDVLLASYVVNPQKSYEDVASVAKEYGLNIALSDE-----KVYGKGAKQAIPPEDEL 446 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLK 208 H+ + D+ L D E L L+ + G ++DL + K Sbjct: 447 KGHLGR-KAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVDLKRLEK 505 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + E + ++ K+ +E I +L + L + LF G+ ++ ++ S Sbjct: 506 MGEELTKKLKEYEETIHRLAGETF-NINSPKQLGVILFEKLGLPIIKKTKTG--YSTSAD 562 Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSG 322 + +L + R I KL + L + D ++ ++TGR S Sbjct: 563 VLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFN-QALTQTGRLSS 621 Query: 323 CVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADL 381 QN+P + +R + S G + AD Sbjct: 622 TDPNLQNIPIR------------------------LEEGRKIRQAFVPSKEGWLMFAADY 657 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE RVLA I+ ++ I+AF DI+ T F+ ++V+ R K + + Y Sbjct: 658 SQIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVY 717 Query: 442 Q----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WE 476 G ++ ++++ + K T+ + Sbjct: 718 GISDYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIP 777 Query: 477 QAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 S + ++ A+ + G+A +++KKA Sbjct: 778 DITSRNFNIKSFAERTAMNTPIQGSAADIIKKAM 811 >gi|467163|gb|AAA50927.1| polI [Mycobacterium leprae] Length = 907 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 86/547 (15%) Query: 45 WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 D + D L L D H + + G + LA Sbjct: 369 IDTAMLTPDDDDALAAWLADPDNPKALHEAK---LAMHDLAGRGWTLGGITSDTALAAYL 425 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 P L+ ++ +F + D + Sbjct: 426 VRPGQRSFTLDDLSLRYLRRELRAETPEQEQFSLLD-NVDEVDKQAIQTLILRARAVVDL 484 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++A +L L + E + + + G DL L+ +LQ + + E Sbjct: 485 AAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEA 544 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSI---LSHSNITQL 273 + I S L++ LF G+ ++ L+S+ H + L Sbjct: 545 AYAVIGKQINLS-SPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHL 603 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + RL + ++ L AV++DGR+ T A+ TGR S QN+P + Sbjct: 604 LTHRDVTRLKVT------VDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQNIPIR 656 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADLAGIEARVL 389 A +R + +L+ AD + IE R++ Sbjct: 657 T------------------------NAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIM 692 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++ ++ I+AF GED++ ++AF PI+ ++ E R K M L Y G A Sbjct: 693 AHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLA 752 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLW 484 K L ++Q+ + + +S + Sbjct: 753 TQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQ 812 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 +++ A+ + G+A +++K A A + +LQ+ +L A +E Sbjct: 813 IREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGERE 872 Query: 535 GGSISAR 541 R Sbjct: 873 QIEAMVR 879 >gi|118617251|ref|YP_905583.1| DNA polymerase I [Mycobacterium ulcerans Agy99] gi|118569361|gb|ABL04112.1| DNA polymerase I PolA [Mycobacterium ulcerans Agy99] Length = 899 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 77/408 (18%), Positives = 144/408 (35%), Gaps = 78/408 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E + L + G +DL ++ LQ A + + E + I + Sbjct: 496 LTDMELPVQHLLAEMETAGIAVDLTMLGGLQRHFADQIRDAAEAAYAVIGKQI-NLGSPK 554 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF + ++ H + L + RL + Sbjct: 555 QLQVVLFDELRMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 610 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +V+ DGR+ T A+ TGR S QN+P + Sbjct: 611 --VDGLLNSVADDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 652 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R + +G +L+ AD + IE R++A ++ ++ I+AF GED+ Sbjct: 653 ---------DAGRQIRDAFVVGDGYSELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDL 703 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++AF PID+V+ E R K M L Y G + K + + Q+ Sbjct: 704 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSSQLKISTEDAKVQMDQYFS 763 Query: 465 NVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + +S + +++ A+ + G+A Sbjct: 764 RFGGVRDYLMAVVEQARKDGYTSTVLGRRRHLPELDSSNRQVREAAERAALNAPIQGSAA 823 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A K + +LQ+ +L A +E R Sbjct: 824 DIIKVAMIEVDKALKEHALKSRMLLQVHDELLFEVAAGEREQIEALVR 871 >gi|15827719|ref|NP_301982.1| DNA polymerase I [Mycobacterium leprae TN] gi|221230196|ref|YP_002503612.1| DNA polymerase I [Mycobacterium leprae Br4923] gi|1169403|sp|P46835|DPO1_MYCLE RecName: Full=DNA polymerase I; Short=POL I gi|559913|emb|CAA86364.1| DNA polymerase I [Mycobacterium leprae] gi|13093270|emb|CAC31762.1| DNA polymerase I [Mycobacterium leprae] gi|219933303|emb|CAR71476.1| DNA polymerase I [Mycobacterium leprae Br4923] Length = 911 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 94/547 (17%), Positives = 174/547 (31%), Gaps = 86/547 (15%) Query: 45 WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 D + D L L D H + + G + LA Sbjct: 373 IDTAMLTPDDDDALAAWLADPDNPKALHEAK---LAMHDLAGRGWTLGGITSDTALAAYL 429 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 P L+ ++ +F + D + Sbjct: 430 VRPGQRSFTLDDLSLRYLRRELRAETPEQEQFSLLD-NVDEVDKQAIQTLILRARAVVDL 488 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++A +L L + E + + + G DL L+ +LQ + + E Sbjct: 489 AAALDAELDLIDSTSLLGEMELPVQQVLADMEKAGIAADLRLLTELQSQFGDQIRDAAEA 548 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSI---LSHSNITQL 273 + I S L++ LF G+ ++ L+S+ H + L Sbjct: 549 AYAVIGKQINLS-SPKQLQVVLFEELGMPKTKRTKTGYTTDADALQSLFCKTEHPFLQHL 607 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 + RL + ++ L AV++DGR+ T A+ TGR S QN+P + Sbjct: 608 LTHRDVTRLKVT------VDGLLNAVAADGRIHTTFNQTIAT-TGRLSSTEPNLQNIPIR 660 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS----NGKKLVVADLAGIEARVL 389 A +R + +L+ AD + IE R++ Sbjct: 661 T------------------------NAGRQIRDAFVVGSENNGYTELMTADYSQIEMRIM 696 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++ ++ I+AF GED++ ++AF PI+ ++ E R K M L Y G A Sbjct: 697 AHLSRDEGLIEAFHTGEDLHSFVASRAFGIPIEDITPELRRRVKAMSYGLAYGLSAYGLA 756 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLW 484 K L ++Q+ + + +S + Sbjct: 757 TQLKISTEEAKLQMEQYFARFGGVRDYLMDVVEQARKDGYTSTVLGRRRYLPELDSSNRQ 816 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 +++ A+ + G+A +++K A A + +LQ+ +L A +E Sbjct: 817 IREAAERAALNAPIQGSAADIIKVAMIAVDKSLKQAKLASRMLLQVHDELLFEVAIGERE 876 Query: 535 GGSISAR 541 R Sbjct: 877 QIEAMVR 883 >gi|145224148|ref|YP_001134826.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] gi|145216634|gb|ABP46038.1| DNA polymerase I [Mycobacterium gilvum PYR-GCK] Length = 908 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 82/493 (16%), Positives = 159/493 (32%), Gaps = 72/493 (14%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D V H + + G + LA P A L+ Sbjct: 390 LADPHVPKALHEAK---LAIHDLQGRGWTLAGVTSDTALAAYLVRPGQRSFALDDLSLRY 446 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 ++ + D + + E + + L Sbjct: 447 LKRELRADNPEQQQLSLLDDSDGVDDQAVQTLLLRASAVVDLADALDEELARIDSSAL-L 505 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 + E + + + G +DL+++ LQ A + + E + I + Sbjct: 506 GNMELPVQRVLAELETAGIAVDLEMLSGLQSEFADQIRDAAEAAYAVIGKQI-NLGSPKQ 564 Query: 241 LRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAIL 290 L++ LF + ++ H + L RL + Sbjct: 565 LQVVLFDELEMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT----- 619 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 ++ L AV+SDGR+ T A+ TGR S QN+P + + Sbjct: 620 -VDGLLNAVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA-------------- 663 Query: 351 ETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + +G +L+ AD + IE R++A ++ ++ I+AF GED++ Sbjct: 664 ----------GRRIRDAFVVGDGYGELMTADYSQIEMRIMAHLSRDEGLIEAFNTGEDLH 713 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 ++AF+ PID+V+ E R K M L Y G ++ K ++Q+ Sbjct: 714 SFVASRAFSVPIDEVTAELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMEQYFAR 773 Query: 466 VKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + +S + +++ A+ + G+A + Sbjct: 774 FGGVRDYLRDVVDQARKDGYTSTVFGRRRYLPELDSSNRQVREAAERAALNAPIQGSAAD 833 Query: 505 LVKKAWRAKHQGV 517 ++K A Q + Sbjct: 834 IIKVAMINVDQAI 846 >gi|116872994|ref|YP_849775.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741872|emb|CAK20996.1| DNA polymerase I [Listeria welshimeri serovar 6b str. SLCC5334] Length = 875 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 75/474 (15%), Positives = 155/474 (32%), Gaps = 62/474 (13%) Query: 67 MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 V +++ + + +G I +LA PS + ++ Sbjct: 366 TKVVYDAKKTMVAMNR-MGFAI--SGITFDIMLASYLLNPSDSIDDFTSVAVRHD---YT 419 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 E + A + KG+ S P + A H+ + ++ + E ++L + D E Sbjct: 420 EVETDEAVYGKGAKRSTPEESIVAGHLARKAVAIAELEKRLVDDLEKNEQLALMEDLELP 479 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + + +G +D + + ++ +A K L+ I L + L + LF Sbjct: 480 LTFVLAQMEMQGVSVDTERLENMKVELAGRLKTLETSIHSLAGEEF-NINSPKQLGVILF 538 Query: 247 LITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SD 302 + V ++ T +L + D IL + L + Sbjct: 539 EKLELPPVKKTKTGYSTAADVLESLSGKHDIIDEILLYRQLGKIQSTYIEGLLKVTDKET 598 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 ++ ++TGR S QN+P + Sbjct: 599 HKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LEEGR 633 Query: 363 CVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 634 KIRQVFVPSKPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFHVEQ 693 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--- 474 ++V R K + + Y G ++ + ++ + + + Sbjct: 694 EEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMHDIV 753 Query: 475 ------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 754 RFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 807 >gi|227875370|ref|ZP_03993512.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] gi|227844275|gb|EEJ54442.1| DNA-directed DNA polymerase [Mobiluncus mulieris ATCC 35243] Length = 1040 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 92/537 (17%), Positives = 180/537 (33%), Gaps = 79/537 (14%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTN 103 W+ + +LL YL D + ++ ER+L ID + +A Sbjct: 517 WEL-SGTVQDVNLLDYLADPDASRLKFAAVTERLL---GWSIDEKPSDIGKISEQMAFDL 572 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 G + A A + +K G + + ++ Y + + + Sbjct: 573 GWGNVTDAAGAAAVTASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLP--------- 623 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + + ++R+ L D E L L + + D G +D L+ + + ++ E K+ + Sbjct: 624 ---ILTEQVKYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTETA 680 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + S L+ LF G+ ++ + L + Sbjct: 681 AFEAIGREVNLS-SPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQAL 739 Query: 284 SSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 KL L + ++ DGR+ T A+ TGR S QN+P + Sbjct: 740 LYFRDRSKLLQIVRNLGDRIAPDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDD--- 795 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA L+ AD + IE R++A ++G++ Sbjct: 796 ---------------------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGL 834 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I AF +GED++ + A F + V+ QR K L Y G A + Sbjct: 835 IAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGE 894 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHL------WMQDQY---------------PEFA 493 ++ + + + + +E+ + W + +Y A Sbjct: 895 AKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAA 954 Query: 494 VKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544 + + G+A +L+K+A + ++ + + V G + RRV Sbjct: 955 LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVV 1011 >gi|170017479|ref|YP_001728398.1| DNA polymerase I [Leuconostoc citreum KM20] gi|169804336|gb|ACA82954.1| DNA polymerase I - 3'-5' exonuclease or polymerase domains [Leuconostoc citreum KM20] Length = 893 Score = 217 bits (552), Expect = 5e-54, Method: Composition-based stats. Identities = 81/489 (16%), Positives = 165/489 (33%), Gaps = 65/489 (13%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 +L + + + N + ILFK+ LG+ + ++ V + + + + LA Sbjct: 372 ELRAVIENGDIKKNVFNVKAQLILFKR-LGLTLKGAQFDFLLVAYLLDTTDNDNEMSTLA 430 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELF 174 F +LT+ EE + KG+ + P D H+ + + + Sbjct: 431 QRFDVYLTEDEEI------YGKGAKYAVPDDEELVLMHLAHKADALIQLEMPALSALQSH 484 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 ++ ++ E L + + +G++ID + ++ + R E+ + L G + Sbjct: 485 QQTHLYTEIELPLAHVLAEMEYQGFKIDRKRL-QVIGEDLEARIHTIEEAIYLEAGEKFN 543 Query: 235 SRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILK 291 L + LF G+ ++ ++ T +L + IL + Sbjct: 544 LNSPKQLGILLFEKMGLPIIKKTKTGYSTAVDVLEKLASQAPIVEHILQYRQLAKIKSTY 603 Query: 292 LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L V D ++ ++TGR S QN+P + Sbjct: 604 VEGLLAVVHTEDSKIHTRF-LQTLTQTGRLSSVDPNLQNIPMRT---------------- 646 Query: 351 ETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + S ++ AD + IE RVLA I G+ +AF NGEDI+ Sbjct: 647 --------EEGRQIRRAFVPSQPNWQIFGADYSQIELRVLAHITGDQNMQRAFLNGEDIH 698 Query: 410 VTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 T F + V R K + + Y G + + ++ + + Sbjct: 699 AETARAVFGLDNNAPVDPLMRRTAKAVNFGIVYGISDYGLSNNLGISRAEAKRFIETYFK 758 Query: 465 NVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTAC 503 + +A++H ++ A+ + G+A Sbjct: 759 EFPQIHEWMTKIKAQAHEQGYVETIAKRRRYLPEIKSKNFNLRSFAERTAMNSPIQGSAA 818 Query: 504 ELVKKAWRA 512 +++K A Sbjct: 819 DIIKIAMIK 827 Score = 47.8 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 8/119 (6%) Query: 538 ISARRVANVPRLVMRRHKRDV-HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 A+R + + I + + + YL S+ R++ + Sbjct: 747 AEAKRFIETYFKEFPQIHEWMTKIKAQAHEQGYVETIAKRRRYLPEIKSKNFNLRSFAER 806 Query: 597 LTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q + DI+ M +I+L VHDE++ E P+ ++ + Sbjct: 807 TAMNSPIQGSAADIIKIAMIKVADALKDNQLQANILLQVHDELIFEAPEDEIETLRDIV 865 >gi|5912328|emb|CAB56093.1| DNA polymerase I [Rickettsia rhipicephali] Length = 875 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 126/367 (34%), Gaps = 54/367 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 SD + + + + G +D + + +L E KL+E+I L+ + Sbjct: 473 YSDIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIGSPK 531 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293 L LF + S + +L++ DL+L + + Sbjct: 532 QLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 591 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + + + T ++ TGR S QN+P + Sbjct: 592 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIPIRS------------------- 632 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T Sbjct: 633 -----SEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + FN +++ E R K + + Y G AK ++++ K Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNATNGEASEYIKKYFAEYKGV 747 Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + +A + H ++ A+ + GT +++K A Sbjct: 748 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 807 Query: 511 RAKHQGV 517 Q + Sbjct: 808 INLDQEI 814 >gi|271964468|ref|YP_003338664.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270507643|gb|ACZ85921.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 901 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 87/549 (15%), Positives = 166/549 (30%), Gaps = 75/549 (13%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS---SLKNAC 113 L +L DE+ H++ + + + C + LA +P L Sbjct: 382 LRAWLGDESRPKAVHDAKGPMLAL---WAQGMELRGLTCDTALAAYLAMPGQRTFLLEDL 438 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 + L E + F D+ RA V+ E T + Sbjct: 439 VRAYLQRELRGEAETGGQASLFDDEDDDTARELGLRALAVRELADALEAFLEPRGGTHLM 498 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + E L + + G D D L+ K+ E Sbjct: 499 R-------EVELPLVTVLAELERAGIAADGDYFSGLEAEFGAAVKQAVEAAHAAVGEQF- 550 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + L+ LF+ + ++ + + L + KL Sbjct: 551 NLGSPKQLQEILFVRLNLPKTKKTKTGYTTDADALAWLAAQTEHELPTIMLRHRDQAKLK 610 Query: 293 ---NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 L + ++ DGR+ T A+ TGR S QN+P + Sbjct: 611 VTVEGLVKEIADDGRIHTTFNQIVAA-TGRLSSEKPNLQNIPIRT--------------- 654 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 + +R + G L+ AD + IE R++A ++G++ I AF +G D Sbjct: 655 ---------VEGRRIRQGFVVGPGYETLLTADYSQIELRIMAHLSGDESLIAAFESGHDF 705 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + TT A+ F+ ++V+ E RA K M L Y G A +++ + Sbjct: 706 HKTTAARVFDIEPEQVTGEMRAKIKAMNYGLAYGLSDFGLAGQLNIPVQEAKALKEEYFE 765 Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503 F + A++ + ++ A+ + G+A Sbjct: 766 EFGGVRDFLNAIVAQARQDGYTETIMGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAA 825 Query: 504 ELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRD 557 +++K A V ++ + + V G + R + + Sbjct: 826 DIIKVAMLNVQSAVKEAALGSRMLLQVHDELVFEVAPGELETLRELVTDRMNAAYSLRVP 885 Query: 558 VHIVLPSSR 566 + + + R Sbjct: 886 LEVSVGVGR 894 Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M N G ++L VHDE+V E ++ L Sbjct: 820 IQGSAADIIKVAMLNVQSAVKEAALGSRMLLQVHDELVFEVAPGELETLRELV 872 >gi|255348868|ref|ZP_05380875.1| DNA polymerase I [Chlamydia trachomatis 70] gi|255503408|ref|ZP_05381798.1| DNA polymerase I [Chlamydia trachomatis 70s] gi|255507086|ref|ZP_05382725.1| DNA polymerase I [Chlamydia trachomatis D(s)2923] gi|289525537|emb|CBJ15015.1| DNA polymerase I [Chlamydia trachomatis Sweden2] gi|296435096|gb|ADH17274.1| DNA polymerase I [Chlamydia trachomatis E/150] gi|296438817|gb|ADH20970.1| DNA polymerase I [Chlamydia trachomatis E/11023] Length = 866 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 94/534 (17%), Positives = 175/534 (32%), Gaps = 75/534 (14%) Query: 19 VGVWAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 + E + L A + + L + D+ + S + Sbjct: 315 CAAYT-GEHLPSLQLHGVALAGANQVFYIEVSGVQEIALLKDFFADKATQFFGYRSKRDN 373 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFC 136 + + GID+ VLA + S ME G A F Sbjct: 374 HALRNS-GIDVHV---TADLVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFS 421 Query: 137 KG------SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 K + S P D ++ + A +L V+ + K + E+ L + Sbjct: 422 KEWGAGSLPVQSLPRDPSQYFGMFASKLLAIKNYLFVKLEEKGLKDIFE--TVEQPLEAV 479 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +D + L + +E ++ ++I L + + L L+ G Sbjct: 480 LFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLG 538 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 I+ VD ++ T +L IL A+ + L + +++ R+ T Sbjct: 539 IEPVDKAKSTKAEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTF 598 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI- 368 G + TGR S QN+P + +R Sbjct: 599 NQVG-TVTGRLSCQDPNLQNIPVRSER------------------------GRSLREAFR 633 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 + + + AD + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+Q Sbjct: 634 VKKDNDYFLAADYSQIELRFLAHLSQDETLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQ 693 Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 R K + L Y G +K+ K S + + + F ++ Sbjct: 694 RYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQ 753 Query: 485 --------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + AV ++ G+A EL+K A + Sbjct: 754 KVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISDEMR 807 >gi|157693309|ref|YP_001487771.1| DNA polymerase I [Bacillus pumilus SAFR-032] gi|157682067|gb|ABV63211.1| DNA-directed DNA polymerase I [Bacillus pumilus SAFR-032] Length = 879 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 86/513 (16%), Positives = 173/513 (33%), Gaps = 70/513 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L +A +E + E + ++++DET +S + + D+ K Sbjct: 335 LIGFAIHNENGAFFMTKEDALQSEAFKEWVQDETKKKWVFDSKRAVVALR---WHDVDLK 391 Query: 92 RWICTSVLARTNGLPSSL--KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 +LA P A +A + ++ +E + KG+ + P + Sbjct: 392 GVDNDVLLASYVVNPQKTYEDVASVAKEYGLNIALSDE-----KVYGKGAKQAIPPEDEL 446 Query: 150 ANHVQAWQLFGEYCKRDVEATRELFKRLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLK 208 H+ + D+ L D E L L+ + G ++D+ + Sbjct: 447 KEHLGR-KAAAISALHDLTLEALEKNDQHELYEDLELPLALILGEMESLGVKVDIKRLEN 505 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 + E + ++ K+ +E I +L + L + LF G+ ++ ++ S Sbjct: 506 MGEELTKKLKEYEETIHRLAGETF-NINSPKQLGVILFEKLGLPIIKKTKTG--YSTSAD 562 Query: 269 NITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 + +L + R I KL + L + D T ++TGR S Sbjct: 563 VLEKLEDKHEIIRSILHYRQIGKLQSTYVEGLMKVTRKDTHKVHTRFNQALTQTGRLSST 622 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLA 382 QN+P + +R + S G + AD + Sbjct: 623 DPNLQNIPIR------------------------LEEGRKIRQAFVPSKEGWLMFAADYS 658 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE RVLA I+ ++ I+AF DI+ T F+ ++V+ R K + + Y Sbjct: 659 QIELRVLAHISQDENLIEAFTRDMDIHTKTAMDVFHVSEEEVTSAMRRQAKAVNFGIVYG 718 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQ 477 G ++ ++++ + K T+ + Sbjct: 719 ISDYGLSQNLGITRKEAAAFIERYLTSFKGVKTYMEEIVQEAKQKGYVTTLLKRRRYIPD 778 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 S + ++ A+ + G+A +++KKA Sbjct: 779 ITSRNFNIKSFAERTAMNTPIQGSAADIIKKAM 811 >gi|315038863|ref|YP_004032431.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] gi|312276996|gb|ADQ59636.1| DNA polymerase [Lactobacillus amylovorus GRL 1112] Length = 887 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 84/513 (16%), Positives = 165/513 (32%), Gaps = 77/513 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 ++ L DE + + R + LGI + +LA + +N Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTQGLDY--DMLLASYL---INNENNS 417 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172 L HL K + + KG + P D NH+ + E K ++ + Sbjct: 418 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIEKLKPELLKKLK 477 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ E + + G +++ +++LQ A + K+L++ I Sbjct: 478 EHEQDALFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYSQAGEKF 537 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ ++ ++ T +L + IL+ + Sbjct: 538 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKMQSPIVSEILDYRQIAKIQS 596 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + DGR+ + TGR S QN+P + Sbjct: 597 TYVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 640 Query: 350 GETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + +G D + +E RVLA ++G+ +AF G D Sbjct: 641 ---------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYD 690 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ T K F+ D+V+ R K + + Y G +K + + Sbjct: 691 IHSHTAMKIFHLDSPDQVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDNY 750 Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501 + + D E+ ++ A+ + G+ Sbjct: 751 FEQYPQIKDYMDKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGS 810 Query: 502 ACELVKKAWRA----------KHQGVLQLWKDL 524 A +++K A K + V+Q+ +L Sbjct: 811 AADIIKIAMINMQKKLDELHLKTKMVVQVHDEL 843 Score = 44.7 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +V+ VHDE++ + P ++ + +M Sbjct: 807 IQGSAADIIKIAMINMQKKLDELHLKTKMVVQVHDELIFDVPKDELETIKKIVPEVMQSA 866 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 867 VK--LDVPLIADSGWGHNWY 884 >gi|269977373|ref|ZP_06184346.1| DNA polymerase I [Mobiluncus mulieris 28-1] gi|269934676|gb|EEZ91237.1| DNA polymerase I [Mobiluncus mulieris 28-1] Length = 1040 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 95/537 (17%), Positives = 181/537 (33%), Gaps = 79/537 (14%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTN 103 W+ + +LL YL D + ++ ER+L ID + +A Sbjct: 517 WEL-SGTVRDVNLLDYLADPDASRLKFAAVTERLL---GWSIDEKPSDIGKISEQMAFDL 572 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 G + A A + +K G + + ++ Y + + + Sbjct: 573 GWGNVTDAAGAAAVAASTGSKDISGGIPLPSLPETLVNQAKYALSLLDML-------PIL 625 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 VE ++R+ L D E L L + + D G +D L+ + + ++ E K+ + Sbjct: 626 TEQVE-----YRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAA 680 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + S L+ LF G+ ++ + L + Sbjct: 681 AFEAIGREVNLS-SPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQAL 739 Query: 284 SSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 KL L + ++SDGR+ T A+ TGR S QN+P + Sbjct: 740 LYFRDRSKLLQVVRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDD--- 795 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA L+ AD + IE R++A ++G++ Sbjct: 796 ---------------------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGL 834 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I AF +GED++ + A F + V+ QR K L Y G A + Sbjct: 835 IAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGE 894 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHL------WMQDQY---------------PEFA 493 ++ + + + + +E+ + W + +Y A Sbjct: 895 AKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAA 954 Query: 494 VKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544 + + G+A +L+K+A + ++ + + V G + RRV Sbjct: 955 LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVV 1011 >gi|219557549|ref|ZP_03536625.1| DNA polymerase I [Mycobacterium tuberculosis T17] gi|260200690|ref|ZP_05768181.1| DNA polymerase I [Mycobacterium tuberculosis T46] gi|289443081|ref|ZP_06432825.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289569674|ref|ZP_06449901.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] gi|289416000|gb|EFD13240.1| DNA polymerase I polA [Mycobacterium tuberculosis T46] gi|289543428|gb|EFD47076.1| DNA polymerase I polA [Mycobacterium tuberculosis T17] Length = 904 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 75/408 (18%), Positives = 146/408 (35%), Gaps = 78/408 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E + + + G +DL ++ +LQ + + + + I + Sbjct: 501 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAADAAYGVIGKQI-NLGSPK 559 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ ++ H + L + RL + Sbjct: 560 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 615 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +AV++DGR+ T A+ TGR S QN+P + Sbjct: 616 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 657 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 AS +R + +G +L+ AD + IE R++A ++G++ I+AF GED+ Sbjct: 658 ---------DASRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 708 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++AF PID+V+ E R K M L Y G ++ K + + Sbjct: 709 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFA 768 Query: 465 NVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 + + +S + +++ A+ + G+A Sbjct: 769 RFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAA 828 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A +E R Sbjct: 829 DIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVR 876 >gi|329117680|ref|ZP_08246397.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] gi|326908085|gb|EGE54999.1| DNA-directed DNA polymerase [Streptococcus parauberis NCFD 2020] Length = 879 Score = 217 bits (552), Expect = 6e-54, Method: Composition-based stats. Identities = 61/406 (15%), Positives = 126/406 (31%), Gaps = 68/406 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + + G ++ + ++ E + L E+I ++ + L Sbjct: 477 DIELPLANVLAKMEIAGITVNKTALQEMAEQNKAVIESLTEEIYEMAGEEF-NINSPKQL 535 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296 LF + L + + + +LA + I KL + L Sbjct: 536 GSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQISKLQSTYVIGLQ 595 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + + SDG++ ++TGR S QN+P Sbjct: 596 DYIMSDGKIHTRY-IQDLTQTGRLSSSDPNLQNIP------------------------V 630 Query: 357 LGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + S L+ +D + IE RVLA I+G++ I AF DI+ +T + Sbjct: 631 RLEQGRLIRKAFLPSSEDAVLLSSDYSQIELRVLAHISGDEHLIAAFKENADIHTSTAMR 690 Query: 416 AFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F ++ V+ R K + + Y G + ++ + + Sbjct: 691 VFGIEKEEDVTPNDRRNAKAVNFGIVYGISDFGLSNNLGITRKKAKDYIETYFERYPGIK 750 Query: 471 TFEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + S + ++ A+ + G+A +++K A Sbjct: 751 EYMETVVRDARDTGYVETLFNRRRELPDINSRNFNIRSFAERTAINSPIQGSAADILKIA 810 Query: 510 WRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 + +LQ+ ++ E ++ Sbjct: 811 MINLDKALSEGQFKAKMLLQVHDEIVLEVPNDELEAIKALVKKTME 856 >gi|237740779|ref|ZP_04571260.1| DNA polymerase I [Fusobacterium sp. 2_1_31] gi|229422796|gb|EEO37843.1| DNA polymerase I [Fusobacterium sp. 2_1_31] Length = 916 Score = 216 bits (551), Expect = 6e-54, Method: Composition-based stats. Identities = 91/517 (17%), Positives = 178/517 (34%), Gaps = 81/517 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---- 112 L++++ + V +++N FK L + K ++A + + Sbjct: 403 LIKFIAELDVKFISYN-------FKTLLNLGFTFKSMYMDMMIAYHLISSQTKMDVFIPI 455 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE 172 N K GKA I G + + + E Sbjct: 456 TEYSNVDAKDFKTTFGKAHIETLLVGEFAGYLSKIGL-GILAIYDEINHILHK-----EE 509 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 L+ LI E L + + +G +ID+ + +E K+++ I + Sbjct: 510 LYDILI---QNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKIEKAIYEEAGEEF 566 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGSA 288 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 567 -NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLK 625 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++TL V S+ R+ + G + TGR S QN+P + Sbjct: 626 TTYVDTLPNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD------------ 672 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D+ Sbjct: 673 ------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKDL 720 Query: 409 YVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T + FN D V++EQR I K++ ++ Y G AK K ++++ Sbjct: 721 HDLTARRIFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYF 780 Query: 464 QNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + +TFE +S + ++ Q AV + GTA Sbjct: 781 EQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTA 840 Query: 503 CELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQE 534 E++KK K + + L + + V+E Sbjct: 841 AEVLKKVMLKVYETLKDKDDIALLLQVHDELIFEVEE 877 Score = 45.1 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ + ++ N ++Q + ++L + M K+ ++L V Sbjct: 808 GRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYETLKDKDDIALLLQV 867 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E ++ + +M Sbjct: 868 HDELIFEVEESSVEKYSEILADIM 891 >gi|242280423|ref|YP_002992552.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] gi|242123317|gb|ACS81013.1| DNA polymerase I [Desulfovibrio salexigens DSM 2638] Length = 904 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 79/448 (17%), Positives = 140/448 (31%), Gaps = 79/448 (17%) Query: 130 ALIARFCKGSIDSPPYDCTRAN--HVQAWQLFGEYCKRDVEAT--RELFKRLIP------ 179 +L A + +D RA + + D + L L P Sbjct: 439 SLAAYLLNPEERNYAWDRLRAMLFAGEELPDAVDEVHPDAQGMAALALMHVLGPRIKSAG 498 Query: 180 ----LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 ++ E L + + G IDLD + + +L I + + Sbjct: 499 LDELTANLEIPLIPVLADMEKAGITIDLDAFADFLTEVNERINELTRVIHERAGEPF-NI 557 Query: 236 RQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILK 291 R + + LF G+ + T S+L + IL Sbjct: 558 RSSQQMATVLFDSLGLKPGGKTPKGALSTANSVLEKLSGQHEIITDILEYRKMEKLRSTY 617 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + V+++GR+ A+ TGR S QN+P + Sbjct: 618 LEPLPKLVNANGRIHTNFNQL-ATATGRLSSSGPNLQNIPIR------------------ 658 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 G +R+C A G +L AD + +E RVLA +G+ + AF + EDI+ Sbjct: 659 ------GDQGKRMRACFTAGEGLRLAAADYSQVELRVLAHFSGDPALVSAFEHDEDIHSR 712 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVK 467 T A F+ V+ ++R K + L Y G + + + ++ + + Sbjct: 713 TAALLFDRDPADVTSDERRNAKTINFGLIYGMGPQKLSRELGIKINEAKEFIAKYFEKLD 772 Query: 468 STSTFEDWEQAESHHLWMQ---------------------DQYPEFAVKDKLIGTACELV 506 F D + Q A+ + G+A +++ Sbjct: 773 VLKEFYDSVVEQGREKGYVTTLSGRRRLLPELHSTSPQILSQARRQAINTVIQGSAADII 832 Query: 507 KKAWRAKHQG----------VLQLWKDL 524 K A +LQ+ +L Sbjct: 833 KMAMIKVADNAEIKHLGGRLILQIHDEL 860 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 9/60 (15%) Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 ++Q + DI+ M N G ++L +HDE++ E P+ ++ + L+ Sbjct: 820 INTVIQGSAADIIKMAMIKVADNAEIKHLGGRLILQIHDELLVEGPEE---NIEEIGKLL 876 >gi|325126152|gb|ADY85482.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 886 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 84/518 (16%), Positives = 167/518 (32%), Gaps = 86/518 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSS 108 S L + L D V N +F+ K+T + I ++ +LA +S Sbjct: 363 SPLKEMLEDSAVQK---N-VFD---LKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNS 415 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + + K L + P D NH+ K + Sbjct: 416 NDLGELVQGYDYYDLK----TDLEVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL 471 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++ E + + G ++ + +L+ A K+L+E I K Sbjct: 472 KQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEA 531 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ ++ ++ +++ + + + D++ R S Sbjct: 532 GEEF-NLNSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQIS 590 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L + + DGR+ + TGR S QN+P + Sbjct: 591 KIQST-YVKGLLDVIDERDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------- 639 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S + D + IE RVLA ++ + +AF Sbjct: 640 ---------------EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAF 684 Query: 403 ANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 G DI+ T K F+ +D+V+ QR K + + Y G +K Sbjct: 685 KTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKE 744 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + ++ + DW + + ++ A+ Sbjct: 745 FIDEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINS 804 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A K + V+Q+ +L Sbjct: 805 PIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDEL 842 Score = 44.0 bits (102), Expect = 0.093, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M K + G V+ VHDE++ + P ++ + S+M Sbjct: 806 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 865 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 866 VK--LDVPLVAD 875 >gi|57505393|ref|ZP_00371321.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] gi|57016218|gb|EAL53004.1| DNA polymerase I (polA) [Campylobacter upsaliensis RM3195] Length = 879 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 90/520 (17%), Positives = 172/520 (33%), Gaps = 95/520 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + + P K++ T +LA + LAL ++ T E Sbjct: 381 IGHNLKYDFAIIENNFKL-TPPKKYADTMILAWLYNPSLRVNMDDLALRLFDYKTLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLS--- 181 K + + +A Y D T + K L P Sbjct: 440 VV------KKGENFASVELEKA---------CNYAAEDAYITLRFYLYFLKNLEPNLLKL 484 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E + + + + G +++ + L + +E K L E+I L D + Sbjct: 485 GFESEFNFIEVLRKMEQSGIKLETQKLQNLMQEFEKEIKFLSEEIYTLCDDKF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 + LF + ++ + L + + + KL Sbjct: 544 QVGDVLFEKLNLPSAKKTK--TGYSTDEKVLENLVDKHPVVSKILAYRELAKLYSTYCEP 601 Query: 295 LSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + D R+ + G + TGR S QN+P Sbjct: 602 LLKLALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAH------------------- 641 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 G + +SC IA +G + D + IE R+LA + ++ ++AF N EDI+ T Sbjct: 642 -----GQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSKDEKLLEAFKNDEDIHART 696 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKS 468 F + + E R++ K + L Y G ++ K AS ++++ N S Sbjct: 697 AIMIFG----ENNYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKEYIEKYFANFTS 752 Query: 469 TSTFEDWEQAESHHLWM--------------------QDQYPEFAVKDKLIGTACELVKK 508 ++ + + E+ Y ++ L G+A +++K Sbjct: 753 IKSYFERVKNEAKINGYISTLSGRKRYFDFANAKPMQVAMYERESINSILQGSAADIIKL 812 Query: 509 AWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 A ++ +LQ+ +L + E AR Sbjct: 813 AMLELYKELDADKRLILQIHDELIFEVKDELCEKFEKRAR 852 Score = 44.3 bits (103), Expect = 0.070, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 10/78 (12%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631 G Y + A ++ M+ Y + +I+Q + DI+ M K ++L +HDE Sbjct: 775 GRKRYFDFANAKPMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDE 834 Query: 632 IVSETPDTPYFSVGTLCS 649 ++ E LC Sbjct: 835 LIFEVK-------DELCE 845 >gi|315638941|ref|ZP_07894112.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] gi|315480970|gb|EFU71603.1| DNA-directed DNA polymerase I [Campylobacter upsaliensis JV21] Length = 879 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 94/522 (18%), Positives = 181/522 (34%), Gaps = 99/522 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + + P K++ T +LA + LAL ++ T E Sbjct: 381 IGHNLKYDFAIIENNFKL-TPPKKYADTMILAWLYNPSLRVNMDDLALRLFDYKTLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLS--- 181 K + + +A Y D T + K L P Sbjct: 440 VV------KKGENFASVELEKA---------CNYAAEDAYITLRFYLYFLKNLEPNLLKL 484 Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E + + + + G +++ + L + +E K L E+I L D + Sbjct: 485 GFESEFNFIEVLRKMEQNGIKLETQKLQNLMQEFEKEIKLLSEEIYTLCDDKF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILNRLASSG-SAIL 290 + LF + ++ L+S++ H ++++ L +L S+ +L Sbjct: 544 QVGDVLFEKLKLPSAKKTKTGYSTDEKVLESLIDKHPVVSKILAYRELAKLYSTYCEPLL 603 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 KL + R+ + G + TGR S QN+P Sbjct: 604 KL----ALKDENSRIYSSFLQTG-TATGRLSSKEPNLQNIPAH----------------- 641 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 G + +SC IA +G + D + IE R+LA + ++ ++AF N EDI+ Sbjct: 642 -------GQYAKDYKSCFIAEDGFSFISLDYSQIELRMLAHFSEDEKLLEAFKNDEDIHA 694 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T F + + E R++ K + L Y G ++ K AS ++++ N Sbjct: 695 RTAIMIFG----ENNYETRSVAKSINFGLIYGMGYKTLSQNLKIEASLAKTYIEKYFANF 750 Query: 467 KSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 S +F + + + Y ++ L G+A +++ Sbjct: 751 TSIKSFFEKVKNDAKINGFISTLSGRKRYFDFANAKPMQVAMYERESINSILQGSAADII 810 Query: 507 KKAWRAKHQG-------VLQLWKDLTEGFACVVQEGGSISAR 541 K A ++ +LQ+ +L + E AR Sbjct: 811 KLAMLELYKELDADKRLILQIHDELIFEVKDELCEKFEKRAR 852 Score = 44.3 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 10/78 (12%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631 G Y + A ++ M+ Y + +I+Q + DI+ M K ++L +HDE Sbjct: 775 GRKRYFDFANAKPMQVAMYERESINSILQGSAADIIKLAMLELYKELDADKRLILQIHDE 834 Query: 632 IVSETPDTPYFSVGTLCS 649 ++ E LC Sbjct: 835 LIFEVK-------DELCE 845 >gi|239946695|ref|ZP_04698448.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920971|gb|EER20995.1| DNA polymerase I family protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 875 Score = 216 bits (551), Expect = 7e-54, Method: Composition-based stats. Identities = 66/367 (17%), Positives = 128/367 (34%), Gaps = 54/367 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 SD + + + + G ++D + + +L E KL+E+I L+ + Sbjct: 473 YSDIDLPICFILDKMEKVGIKVDANYLKQLSAEFGAEILKLEEEIFALSGTKF-NIGSPK 531 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLN 293 L LF + +S + +L++ L+L + + Sbjct: 532 QLGEILFEKMQLPFGKVSAKASSYSTGAEILEKLSEHGYNIANLLLRWRQLTKLKNTYTD 591 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + + + + T ++ TGR S QN+P + Sbjct: 592 SLPKQIDNITKRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------------- 632 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T Sbjct: 633 -----SEGNKIRQAFIAEKGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + FN +++ E R K + + Y G AK ++++ K Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGKASEYIKKYFAEYKGV 747 Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + +A + H ++ A+ + GT +++K A Sbjct: 748 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 807 Query: 511 RAKHQGV 517 Q + Sbjct: 808 INLDQEI 814 >gi|297748623|gb|ADI51169.1| DNA polymerase I [Chlamydia trachomatis D-EC] gi|297749503|gb|ADI52181.1| DNA polymerase I [Chlamydia trachomatis D-LC] Length = 868 Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 94/534 (17%), Positives = 174/534 (32%), Gaps = 75/534 (14%) Query: 19 VGVWAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 + E + L A + + L + D+ + S + Sbjct: 317 CAAYT-GEHLPSLQLHGVALAGANQVFYIEVSGVQEIALLKDFFADKATQFFGYRSKRDN 375 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFC 136 + + GID+ VLA + S ME G A F Sbjct: 376 HALRNS-GIDVHV---TADLVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFS 423 Query: 137 KG------SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 K + S P D + + A +L V+ + K + E+ L + Sbjct: 424 KEWGAGSLPVQSLPRDPLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFE--TVEQPLEAV 481 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +D + L + +E ++ ++I L + + L L+ G Sbjct: 482 LFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLG 540 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 I+ VD ++ T +L IL A+ + L + +++ R+ T Sbjct: 541 IEPVDKAKSTKAEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTF 600 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI- 368 G + TGR S QN+P + +R Sbjct: 601 NQVG-TVTGRLSCQDPNLQNIPVRSER------------------------GRSLREAFR 635 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 + + + AD + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+Q Sbjct: 636 VKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQ 695 Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 R K + L Y G +K+ K S + + + F ++ Sbjct: 696 RYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQ 755 Query: 485 --------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + AV ++ G+A EL+K A + Sbjct: 756 KVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISDEMR 809 >gi|15605221|ref|NP_220007.1| DNA polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76789230|ref|YP_328316.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|237802921|ref|YP_002888115.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|237804843|ref|YP_002888997.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|255311309|ref|ZP_05353879.1| DNA polymerase I [Chlamydia trachomatis 6276] gi|255317610|ref|ZP_05358856.1| DNA polymerase I [Chlamydia trachomatis 6276s] gi|3328929|gb|AAC68093.1| DNA Polymerase I [Chlamydia trachomatis D/UW-3/CX] gi|76167760|gb|AAX50768.1| DNA polymerase I [Chlamydia trachomatis A/HAR-13] gi|231273143|emb|CAX10056.1| DNA polymerase I [Chlamydia trachomatis B/TZ1A828/OT] gi|231274155|emb|CAX10949.1| DNA polymerase I [Chlamydia trachomatis B/Jali20/OT] gi|296436024|gb|ADH18198.1| DNA polymerase I [Chlamydia trachomatis G/9768] gi|296436952|gb|ADH19122.1| DNA polymerase I [Chlamydia trachomatis G/11222] gi|296437885|gb|ADH20046.1| DNA polymerase I [Chlamydia trachomatis G/11074] gi|297140385|gb|ADH97143.1| DNA polymerase I [Chlamydia trachomatis G/9301] Length = 866 Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 94/534 (17%), Positives = 174/534 (32%), Gaps = 75/534 (14%) Query: 19 VGVWAYAEQ-AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER 77 + E + L A + + L + D+ + S + Sbjct: 315 CAAYT-GEHLPSLQLHGVALAGANQVFYIEVSGVQEIALLKDFFADKATQFFGYRSKRDN 373 Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA-RFC 136 + + GID+ VLA + S ME G A F Sbjct: 374 HALRNS-GIDVHV---TADLVLAEHLVSGGA--------KISFQTLLMESGHIQEAVFFS 421 Query: 137 KG------SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL 190 K + S P D + + A +L V+ + K + E+ L + Sbjct: 422 KEWGAGSLPVQSLPRDPLQYFGMLASKLLAIKNYLFVKLEEKGLKDIFE--TVEQPLEAV 479 Query: 191 DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITG 250 + G +D + L + +E ++ ++I L + + L L+ G Sbjct: 480 LFAMECVGMPLDSQGLAVLDRDLTKELEECSQEIYDLVGCEF-NIKSPKQLSDILYQRLG 538 Query: 251 IDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTL 309 I+ VD ++ T +L IL A+ + L + +++ R+ T Sbjct: 539 IEPVDKAKSTKAEVLEALEDRHEIIPKILMFRATEKMLSTYVRALPKQINAGTQRIHPTF 598 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI- 368 G + TGR S QN+P + +R Sbjct: 599 NQVG-TVTGRLSCQDPNLQNIPVRSER------------------------GRSLREAFR 633 Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 + + + AD + IE R LA ++ ++ +AF +GEDI+ T ++ FN P+++V+K+Q Sbjct: 634 VKKDNDYFLAADYSQIELRFLAHLSQDEMLKRAFNSGEDIHAFTASQVFNVPLEQVTKQQ 693 Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW 484 R K + L Y G +K+ K S + + + F ++ Sbjct: 694 RYQAKAVNFGLVYGQQAYGLSKILKISVSEAQGLMDAYFARYPLAAEFITQTIEQASKNQ 753 Query: 485 --------------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + AV ++ G+A EL+K A + Sbjct: 754 KVTTMLGRERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISDEMR 807 >gi|256847515|ref|ZP_05552961.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] gi|256716179|gb|EEU31154.1| DNA-directed DNA polymerase I [Lactobacillus coleohominis 101-4-CHN] Length = 887 Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 77/495 (15%), Positives = 168/495 (33%), Gaps = 70/495 (14%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ + L + + N+ + + + + ++ S L TN + L Sbjct: 365 EIKELLENPKIKKDTFNAKAHYVALHRQGIELHGNGFDFLLVSYLLNTNDNSNDLGQLAH 424 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQAWQLFGEYCKRDVEATREL 173 N+ + EE + KG P D + H+ + E K + T +L Sbjct: 425 EHNY-YQVQSDEEV------YGKGKSRHLPDDRSVFFTHLVQKGMAIEQLKHPL--TDQL 475 Query: 174 FK-RLIPL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 + PL +D ER L + + G +D + ++ + + +L++ I Sbjct: 476 HENEQWPLYTDIERPLSHVLAKMEIAGVHVDATTLKEMGSKLKERLAELEQAIYNEAGEE 535 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGS 287 + T L LF + ++ ++ +++ + + ++++ R S Sbjct: 536 F-NINSTKQLGTILFEKMKLPVIKKTKTGYSTSVEVLEKLQGRAPIIDNILVYRQISKIQ 594 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L SSD ++ ++TGR S QN+P Sbjct: 595 STYITGLLKVIHSSDQKIHTRY-LQTLTQTGRLSSVDPNLQNIP---------------- 637 Query: 348 NRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R S G K+ +D + +E RVLA + G+ + F +G+ Sbjct: 638 --------VRLEEGRKIRRAFKPSQPGWKIFSSDYSQVELRVLAHVTGDRNLQQDFIDGK 689 Query: 407 DIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ +T + F+ P +KV+ R K + + Y G ++ +Q Sbjct: 690 DIHESTARRIFHLLPGEKVTPNMRRQAKAVNFGIVYGISDYGLSQNIHVTRKQAHEFIQS 749 Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500 + + + + + S + + A+ + G Sbjct: 750 YFKEFPGVQEYIENIVKLAKKQGYVETLTHRRRYLPEINSKNFSRRSFAERTAMNTPIQG 809 Query: 501 TACELVKKAWRAKHQ 515 +A +++K A ++ Sbjct: 810 SAADIIKIAMINMNE 824 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M N K G ++L +HDE++ E P+ + L Sbjct: 807 IQGSAADIIKIAMINMNEQLQKAGLKAKMLLQIHDELIFEAPEEEIDQLRELV 859 >gi|67459631|ref|YP_247255.1| DNA polymerase I [Rickettsia felis URRWXCal2] gi|14916559|sp|Q9RAA9|DPO1_RICFE RecName: Full=DNA polymerase I; Short=POL I gi|5912337|emb|CAB56067.1| DNA polymerase I [Rickettsia felis] gi|67005164|gb|AAY62090.1| DNA polymerase I (POL I) [Rickettsia felis URRWXCal2] Length = 922 Score = 216 bits (551), Expect = 8e-54, Method: Composition-based stats. Identities = 70/405 (17%), Positives = 137/405 (33%), Gaps = 64/405 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 S+ + + + + G ++D + + +L E KL+E+I L+ + Sbjct: 520 YSNIDLPICFILDKMEKIGIKVDANYLNQLSAEFGAEILKLEEEIFALSGTKF-NIGSPK 578 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293 L LF + S + +L++ DL+L + + Sbjct: 579 QLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 638 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + + + T ++ TGR S QN+P + Sbjct: 639 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------------- 679 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T Sbjct: 680 -----SEGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 734 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + FN +++ E R K + + Y G AK ++++ K Sbjct: 735 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGEASEYIKKYFAEYKGV 794 Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + +A + H ++ A+ + GT +++K A Sbjct: 795 QEYMEQTKAFASSNGYVINFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 854 Query: 511 RAKHQGV----------LQLWKDLTEGFACVVQEGGSISARRVAN 545 Q + LQ+ +L E + +++ Sbjct: 855 INLDQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIME 899 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +Q + DI+ M N + +VL +HDE++ E P+ V + +M Sbjct: 842 IQGTNADIIKIAMINLDQEIEKNNLKTRLVLQIHDELLFEVPEDEVELVTPIIKKIM 898 >gi|104774358|ref|YP_619338.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514452|ref|YP_813358.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103423439|emb|CAI98312.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093767|gb|ABJ58920.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 886 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 84/518 (16%), Positives = 167/518 (32%), Gaps = 86/518 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSS 108 S L + L D V N +F+ K+T + I ++ +LA +S Sbjct: 363 SPLKEMLEDSAVQK---N-VFD---LKRTTYGLYRLGIKAEGLSFDLLLASYLVDNEKNS 415 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + + K L + P D NH+ K + Sbjct: 416 NDLGELVQGYDYYDLK----TDLEVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL 471 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++ E + + G ++ + +L+ A K+L+E I K Sbjct: 472 KQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEA 531 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ ++ ++ +++ + + + D++ R S Sbjct: 532 GEEF-NLNSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQIS 590 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L + + DGR+ + TGR S QN+P + Sbjct: 591 KIQST-YVKGLLDVIDERDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------- 639 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S + D + IE RVLA ++ + +AF Sbjct: 640 ---------------EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAF 684 Query: 403 ANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 G DI+ T K F+ +D+V+ QR K + + Y G +K Sbjct: 685 KTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKE 744 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + ++ + DW + + ++ A+ Sbjct: 745 FINEYFDQYPGIQAYMDWAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINS 804 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A K + V+Q+ +L Sbjct: 805 PIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDEL 842 Score = 44.0 bits (102), Expect = 0.087, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M K + G V+ VHDE++ + P ++ + S+M Sbjct: 806 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 865 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 866 VK--LDVPLVAD 875 >gi|16800668|ref|NP_470936.1| DNA polymerase I [Listeria innocua Clip11262] gi|16414087|emb|CAC96831.1| DNA polymerase I [Listeria innocua Clip11262] Length = 875 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 62/477 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ + + I K +LA PS + ++ Sbjct: 363 SDETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHD-- 417 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 418 -YTEVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDDLEENEQLALMEDL 476 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D + ++ +A K L+E I L + L + Sbjct: 477 ELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 535 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF + V ++ T +L + D IL + L + Sbjct: 536 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 631 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 D+V R K + + Y G ++ + ++ + + + Sbjct: 691 VEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 750 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 807 Score = 44.7 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M + ++L VHDE++ E P+ + + Sbjct: 795 IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIV 847 >gi|305432895|ref|ZP_07402053.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] gi|304444049|gb|EFM36704.1| DNA-directed DNA polymerase I [Campylobacter coli JV20] Length = 879 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 89/514 (17%), Positives = 165/514 (32%), Gaps = 95/514 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + + + +++ T +LA + LAL + T E Sbjct: 381 IGHNLKYDFKIIENNFKLSL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 439 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLSDGE 184 K + + +A +Y D T + K L P Sbjct: 440 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLEPHLLDL 484 Query: 185 RDLWLLD-----QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + D + + G ++D + L + E K L E+I L + + Sbjct: 485 AKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRF-NLNSPK 543 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 + LF + L +G + +L + + KL Sbjct: 544 QVGDILFEK--LKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYRELAKLYSTYCEP 601 Query: 295 LSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + D R+ + G + TGR S QN+P Sbjct: 602 LLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH------------------- 641 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 G + +SC IA G + D + IE R+LA + ++ + AF N EDI+ T Sbjct: 642 -----GQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHART 696 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKS 468 F + + E R+I K + L Y G K K A+ ++++ +N S Sbjct: 697 AIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFTS 752 Query: 469 TSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 ++ + + E+ Y ++ L G+A +++K Sbjct: 753 IKSYFEKVKNEAKANGFISTLSGRKRYFDFENAKPMQVAMYERESINSILQGSAADIIKF 812 Query: 509 AW-------RAKHQGVLQLWKDLTEGFACVVQEG 535 A + +LQ+ +L + E Sbjct: 813 AMLEIAKILNQDKRLILQIHDELIFEVKDELCEN 846 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631 G Y + ++ M+ Y + +I+Q + DI+ M K ++L +HDE Sbjct: 775 GRKRYFDFENAKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDE 834 Query: 632 IVSETPDTPYFS-VGTLCSLM 651 ++ E D + V +M Sbjct: 835 LIFEVKDELCENFVKKTSDIM 855 >gi|161507870|ref|YP_001577834.1| DNA polymerase [Lactobacillus helveticus DPC 4571] gi|160348859|gb|ABX27533.1| DNA polymerase [Lactobacillus helveticus DPC 4571] Length = 887 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 81/500 (16%), Positives = 160/500 (32%), Gaps = 67/500 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 ++ L DE + + R + LGI + +LA + +N Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTHGLDY--DMLLASYL---INNENNS 417 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172 L HL K + + KG + P D NH+ + E K+ + + Sbjct: 418 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLK 477 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ E + + G +++ +++LQ A + KKL++ I Sbjct: 478 DHEQDALFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKKLEDKIYGQAGEKF 537 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ ++ ++ T +L IL+ + Sbjct: 538 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSKILDYRQIAKIQS 596 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + DGR+ + TGR S QN+P + Sbjct: 597 TYVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 640 Query: 350 GETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + +G D + +E RVLA ++G+ +AF G D Sbjct: 641 ---------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYD 690 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ T K F+ D+V+ R K + + Y G +K + + Sbjct: 691 IHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDNY 750 Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501 + + + E+ ++ A+ + G+ Sbjct: 751 FEQYPQIKDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGS 810 Query: 502 ACELVKKAWRAKHQGVLQLW 521 A +++K A + + +L Sbjct: 811 AADIIKIAMINMQKKLDELH 830 Score = 44.7 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +V+ VHDE++ + P ++ + +M Sbjct: 807 IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSA 866 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 867 VK--LDVPLIADSGWGHNWY 884 >gi|306818684|ref|ZP_07452406.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307701025|ref|ZP_07638050.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] gi|304648370|gb|EFM45673.1| DNA-directed DNA polymerase I [Mobiluncus mulieris ATCC 35239] gi|307614020|gb|EFN93264.1| DNA-directed DNA polymerase [Mobiluncus mulieris FB024-16] Length = 1040 Score = 216 bits (550), Expect = 9e-54, Method: Composition-based stats. Identities = 93/537 (17%), Positives = 181/537 (33%), Gaps = 79/537 (14%) Query: 45 WDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-ICTSVLARTN 103 W+ + +LL YL D + ++ ER+L ID + +A Sbjct: 517 WEL-SGTVQDVNLLDYLADPDASRLKFAAVTERLL---GWSIDEKPSDIGKISEQMAFDL 572 Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 G + A A + +K G + + ++ Y + + + Sbjct: 573 GWGNVTDAAGAAAVTASTGSKDISGGIPLPSLPETLVNQAKYALSLLDMLP--------- 623 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + + ++R+ L D E L L + + D G +D L+ + + ++ E K+ + Sbjct: 624 ---ILTEQVKYRRVGSLLDMELPLSRLLERMEDTGIAVDEGLLQRFDQELSSEVKRTEAA 680 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + + S L+ LF G+ ++ + L + Sbjct: 681 AFEAIGREVNLS-SPKQLQDVLFNQLGLPPTRKTKTGYTTDAKALEELALYNPHPFLQAL 739 Query: 284 SSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 KL L + ++SDGR+ T A+ TGR S QN+P + Sbjct: 740 LYFRDRSKLLQVVRNLGDRIASDGRIHTTFGQTVAA-TGRLSSLDPNLQNIPARTDD--- 795 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWK 398 +R IA L+ AD + IE R++A ++G++ Sbjct: 796 ---------------------GARIRETFIAQMPFVSLMTADYSQIEMRIMAHLSGDEGL 834 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I AF +GED++ + A F + V+ QR K L Y G A + Sbjct: 835 IAAFKSGEDLHRSVAALVFGVAPEAVTATQRTHVKATSYGLAYGLSAFGLAGQLRISQGE 894 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHL------WMQDQY---------------PEFA 493 ++ + + + + +E+ + W + +Y A Sbjct: 895 AKHLMETYFSRFGAVRDYLEHIVSEARRVGYTETMWGRRRYLPGLRATNRVVAENARRAA 954 Query: 494 VKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544 + + G+A +L+K+A + ++ + + V G + RRV Sbjct: 955 LNAPIQGSAADLMKQAMLRVDAAMAAAGLGSRILLQIHDELVFEVAPGEVDALRRVV 1011 >gi|41407420|ref|NP_960256.1| DNA polymerase I [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395772|gb|AAS03639.1| PolA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 919 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 93/529 (17%), Positives = 168/529 (31%), Gaps = 86/529 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D H + + G + LA P S LAL + Sbjct: 401 LADPGPPKALHEAK---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRY 457 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 E D + ++A + D E R L Sbjct: 458 LR-RELRAENPQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSL- 515 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 LS E + + + + G +DLDL+ +LQ A + + E + I + Sbjct: 516 -LSGMELPVQRVLAGMENAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSP 573 Query: 239 YALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSA 288 L+ LF + ++ H + L RL + Sbjct: 574 KQLQAVLFDELQMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT--- 630 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L +V+SDGR+ T A+ TGR S QN+P + + Sbjct: 631 ---VDGLLNSVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------ 674 Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + +G +L+ AD + IE R++A ++ + I+AF GED Sbjct: 675 ------------GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGED 722 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 ++ ++AF PI++V+ E R K M L Y G ++ K + + Sbjct: 723 LHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYF 782 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + ++ + +++ A+ + G+A Sbjct: 783 ARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSA 842 Query: 503 CELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISAR 541 +++K A + + LQ+ +L A +E AR Sbjct: 843 ADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALAR 891 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K G I+L VHDE++ E + L Sbjct: 838 IQGSAADIIKVAMIEVDKAIKEAGLRSRILLQVHDELLFEVAAGEREQLEALAR 891 >gi|157829037|ref|YP_001495279.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933761|ref|YP_001650550.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] gi|5912316|emb|CAB56098.1| DNA polymerase I [Rickettsia rickettsii] gi|157801518|gb|ABV76771.1| DNA polymerase I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908848|gb|ABY73144.1| DNA polymerase I [Rickettsia rickettsii str. Iowa] Length = 875 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 85/493 (17%), Positives = 160/493 (32%), Gaps = 87/493 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICT--SVLARTNGLPSSLKNACL 114 + L D+++ + ++ L K K A + GL Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDIKAIEDLELMQYALSAGLSQ------- 426 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATREL 173 N + + K + +I K I+ Y T W+L T L Sbjct: 427 -KNLFKEVLKETWIENIIIESAKIVINFITLYKQT------IWELKDN-------KTFRL 472 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + S+ + + + + G +D + + +L E KL+E+I L+ Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287 + L LF + S + +L++ DL+L + Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++L + + + T ++ TGR S QN+P + Sbjct: 586 KNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------- 632 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + +R IA G KL+ AD + IE R+L+ IA D +AF N +D Sbjct: 633 -----------SEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T + FN +++ E R K + + Y G AK ++++ Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTHGEASAYIKKYF 741 Query: 464 QNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACE 504 K + + +A + H ++ A+ + GT + Sbjct: 742 AEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNAD 801 Query: 505 LVKKAWRAKHQGV 517 ++K A Q + Sbjct: 802 IIKIAMINLDQEI 814 >gi|227524689|ref|ZP_03954738.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227088173|gb|EEI23485.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 883 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 71/502 (14%), Positives = 160/502 (31%), Gaps = 72/502 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVL-ARTNGLPSSLK 110 + L TV ++ + +G+ I + +L + ++ Sbjct: 362 KQVKAILESSTVQKNVFDAK------RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + ++ + + + K ID P +H+ + D+ Sbjct: 416 DVGTVAKL-HGFANIKTDEEVYGKGAKKKID--PEVPEFFDHIVHKAKAIDQLHNDMFKA 472 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + D E + + + G +++ + + ++ + ++++ I + Sbjct: 473 LDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAGE 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + ++ ++ + + + +LA D + + + I Sbjct: 533 EF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVD--VLEKLAPDAPIVQNVLNYRQIS 589 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L + + + T ++TGR S QN+P + Sbjct: 590 KLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRS----------- 638 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I S ++ +D + IE RVLA I G+ +AF Sbjct: 639 -------------EEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 GEDI+ TT + F D V+ E R K + + Y G A + Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQFI 745 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 Q++ + + + S + ++ A+ + Sbjct: 746 QRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNTPI 805 Query: 499 IGTACELVKKAWRAKHQGVLQL 520 G+A +++K A + + L Sbjct: 806 QGSAADIIKIAMINMDEALKPL 827 >gi|227541511|ref|ZP_03971560.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] gi|227182793|gb|EEI63765.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51866] Length = 887 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 71/423 (16%), Positives = 139/423 (32%), Gaps = 65/423 (15%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L +D E L + + D G +D + + + + +E L + Sbjct: 480 ESLELYTDLEIPLITILAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAGDPSLN 539 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK--- 291 L++ LF + ++ + D + + K Sbjct: 540 LSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKKTDHPFLQHLLAHREYSKMKS 599 Query: 292 -LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L L +V DGR+ T + + TGR S QN+P + Sbjct: 600 TLEGLIRSVGGDGRIHTTFK-QTVASTGRLSSTDPNLQNIPVRT---------------- 642 Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 A +RS + G + L+ AD + IE RV+A ++ + I+A+ +GED++ Sbjct: 643 --------DAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLH 694 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 +K F+ ID+V+ E R K M L Y G A + + + Sbjct: 695 NYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYGLAAQLDIPQGEAKSIMDSYFER 754 Query: 466 VKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACE 504 + E+ + ++ A+ + GTA + Sbjct: 755 FGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGTAAD 814 Query: 505 LVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 ++K A ++ + ++ + + V G + V R+V + + Sbjct: 815 IIKVAMVRVNRRLDSLKSRVLLQVHDELVLEVAPG------ELEEVSRIVSEEMDGAISL 868 Query: 561 VLP 563 +P Sbjct: 869 RVP 871 Score = 46.3 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 38/276 (13%), Positives = 90/276 (32%), Gaps = 25/276 (9%) Query: 396 DWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + I++ I+ T T + P + + GK + A G + Sbjct: 602 EGLIRSVGGDGRIHTTFKQTVASTGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETL 661 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++++ + + + ++ E H ++ + + + + + Sbjct: 662 LT-ADYSQIEMRVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAM 720 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 ++ L+ + A+ + + K + V+ +R+ Sbjct: 721 SYGLA--------YGLSSYGLAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKD 772 Query: 569 VYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----GY 622 Y+ G YL TS R + N +Q + DI+ M + Sbjct: 773 GYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGTAADIIKVAMVRVNRRLDSLKS 832 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWA 658 ++L VHDE+V E + + ++++ A Sbjct: 833 RVLLQVHDELVLEV---APGELEEVSRIVSEEMDGA 865 >gi|15835394|ref|NP_297153.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270285571|ref|ZP_06194965.1| DNA polymerase I [Chlamydia muridarum Nigg] gi|270289582|ref|ZP_06195884.1| DNA polymerase I [Chlamydia muridarum Weiss] gi|301336968|ref|ZP_07225170.1| DNA polymerase I [Chlamydia muridarum MopnTet14] gi|7190807|gb|AAF39583.1| DNA polymerase I [Chlamydia muridarum Nigg] Length = 866 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 92/527 (17%), Positives = 168/527 (31%), Gaps = 79/527 (14%) Query: 28 AVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 + L A + + L + D T + + + K GID Sbjct: 324 PSLRLHGVALSGGDEVFYIEISGDQEIALLKAFFADATTKFFGYRTKRDNHALKNH-GID 382 Query: 88 IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKG-SIDSPPYD 146 + VLA+ + + L S H+ A F K S P Sbjct: 383 VHV---TADLVLAQHLVNGGAKISFQTLLVESGHIQ-------EAAFFAKEWGASSLPVQ 432 Query: 147 CTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD----------GERDLWLLDQTIND 196 N Q + +F + L + E+ L + + Sbjct: 433 NLPQNPAQYFGIFVSRLPS-------IKNYLFEKLEEKGLKSIFKNVEQPLEEILFAMEC 485 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G +D + +L L +++E + ++I L + + L L+ GI VD Sbjct: 486 AGMPLDSEGLLVLDRDLSKELETYTQEIYDLAGCEF-NIKSPKQLSDVLYHRLGIKPVDK 544 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGAS 315 ++ T +L + IL A+ + L + R+ T G + Sbjct: 545 AKSTKAEVLEALEGSHEIISKILAFRATEKMLSTYVRALPRQIDLGTHRVHPTFNQVG-T 603 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK 375 TGR S QN+P + + L + + Sbjct: 604 VTGRLSCQDPNLQNIPVRYERGKSLREAFRFTK-----------------------ENDY 640 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 + AD + +E R LA ++ ++ +AF +GEDI+ T ++ FN P+D+V++ QR K + Sbjct: 641 FLAADYSQVELRFLAHLSQDETLKRAFDSGEDIHTFTASQVFNVPLDQVTERQRYQAKAV 700 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW------- 484 L Y G +K K + + + S F ++ Sbjct: 701 NFGLAYGQQAYGLSKNLKISVNEAQGLIDAYFARYPQASEFITHTIEQASKEQKVTTMLG 760 Query: 485 -------------MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL 518 + AV ++ G+A EL+K A + ++ Sbjct: 761 RERILSDWESSPGARAASGRLAVNTRIQGSAAELIKLAMLNISRELV 807 >gi|227513546|ref|ZP_03943595.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227083419|gb|EEI18731.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] Length = 883 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 71/502 (14%), Positives = 160/502 (31%), Gaps = 72/502 (14%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGID---IPSKRWICTSVL-ARTNGLPSSLK 110 + L TV ++ + +G+ I + +L + ++ Sbjct: 362 KQVKAVLESSTVQKNVFDAK------RTYVGLYRSSITLQNVDFDMLLVSYLLNTTNNSN 415 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 + ++ + + + K ID P +H+ + D+ Sbjct: 416 DVGTVAKL-HGFANIKTDEEVYGKGAKKKID--PEVPEFFDHIVHKAKAIDQLHNDMFKA 472 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + + D E + + + G +++ + + ++ + ++++ I + Sbjct: 473 LDEHNQTTLYRDIEIKIAFVLAKMEIAGIKVNPETLEQMGSKFKERLAEIEQTIFQEAGE 532 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L LF + ++ ++ + + + +LA D + + + I Sbjct: 533 EF-NIGSPKQLGHILFEKMRLPILKKTKTGYSTSVD--VLEKLAPDAPIVQNVLNYRQIS 589 Query: 291 KL-----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 KL + L + + + T ++TGR S QN+P + Sbjct: 590 KLQSTYIDGLLKVIHRNDSKVHTRYLQTLTQTGRLSSVDPNLQNIPVRS----------- 638 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R I S ++ +D + IE RVLA I G+ +AF Sbjct: 639 -------------EEGRLIRQAFIPSHENWQIWSSDYSQIELRVLASITGDKNMQEAFRE 685 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 GEDI+ TT + F D V+ E R K + + Y G A + Sbjct: 686 GEDIHATTARRIFGLASNDDVTPELRRQAKAVNFGIVYGISDYGLANNTGISRKQAHQFI 745 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 Q++ + + + S + ++ A+ + Sbjct: 746 QRYFEEYPGVKKYTEDIVEFAKNHGYVETIAHRRRYLPDIHSRNFNLRSFAERTAMNTPI 805 Query: 499 IGTACELVKKAWRAKHQGVLQL 520 G+A +++K A + + L Sbjct: 806 QGSAADIIKIAMINMDEALKPL 827 >gi|154175515|ref|YP_001408840.1| DNA polymerase I [Campylobacter curvus 525.92] gi|112803673|gb|EAU01017.1| DNA polymerase I superfamily [Campylobacter curvus 525.92] Length = 879 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 93/587 (15%), Positives = 179/587 (30%), Gaps = 110/587 (18%) Query: 4 LFIDIETRSPQPLPKVGVWAYA-----EQAVITLCAYAWDDEPVKLW-DRTEQSAMPSDL 57 + D ET + ++ E A A+++ P ++ D + Sbjct: 319 IAFDTETT-DIDTQSAKLVGFSFCFNDENAYYVPVAHSYLGAPKQVGTDFAAWAV----- 372 Query: 58 LQYLRDETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 + V N ++ + K+ LG++ P ++ T VLA ++ L Sbjct: 373 ------GQIYKGCVVGQNLKYDFKVVKRNLGLE-PPVKFKDTMVLAWLADPSQAVGMDAL 425 Query: 115 ALN-FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 A ++ K E+ F +++ +Y D T + Sbjct: 426 AKRLYNYDTIKFEDVVRRGETFASVPLENAA----------------KYAAEDAWITLKF 469 Query: 174 FKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 +K + L D E L + G I+ + L + K L +I Sbjct: 470 YKSFLNLLDPALIELANAHEFPFILTLFDMESVGIAINKKKMQNLILQNDAKIKILTSEI 529 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 +LT + L LF + + ++ T +++L+ L +L Sbjct: 530 YELTGENF-NINSVKQLGAVLFEHLKLPVKKKTKTGYSTDEAVLAELIDAHLVIAKLLEY 588 Query: 282 LASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 L + D R+ G + TGR + QN+P + Sbjct: 589 RELYKLQSTYCEPLLNLANKDENSRIYTNFVQTG-TSTGRLASKNPNLQNIPAR------ 641 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 G + VR A G V D + IE R+LA + ++ + Sbjct: 642 ------------------GSLAKDVRETFEAKEGYSFVGLDYSQIELRLLAHFSRDEALL 683 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 KAF N EDI+ T F + + RA+ K + L Y G A + Sbjct: 684 KAFENDEDIHARTAISIFGSA----DGQNRAVAKSINFGLIYGMGSSKLAGQVNISRAEA 739 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVK 495 ++++ + + F + + + + Y AV Sbjct: 740 KEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRFFDFTNATPMQTAMYEREAVN 799 Query: 496 DKLIGTACELVKKAWRAKHQ---GVLQLWKDLTEGFACVVQEGGSIS 539 G+A +++K A ++ + + V + + Sbjct: 800 TIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDELIFEVADEHAAE 846 Score = 41.3 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 4/81 (4%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNG---YDIVLTVHDE 631 G + + + M+ Y + I Q + DI+ M ++L +HDE Sbjct: 775 GRKRFFDFTNATPMQTAMYEREAVNTIFQGSAADIIKLAMVKIRPLCSVRAKMLLQIHDE 834 Query: 632 IVSETPDTPYFSVGTLCS-LM 651 ++ E D G +M Sbjct: 835 LIFEVADEHAAEFGEAAQKIM 855 >gi|227488114|ref|ZP_03918430.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091976|gb|EEI27288.1| DNA-directed DNA polymerase [Corynebacterium glucuronolyticum ATCC 51867] Length = 887 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 71/423 (16%), Positives = 139/423 (32%), Gaps = 65/423 (15%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L +D E L + + D G +D + + + + +E L + Sbjct: 480 ESLELYTDLEIPLITILAAMEDTGIAVDTHTLEEQLDGFVDLVAQEEEAARDLAGDPSLN 539 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILK--- 291 L++ LF + ++ + D + + K Sbjct: 540 LSSPKQLQVVLFETFDLPKTKKTKTGYSTAAKEIEALAKKTDHPFLQHLLAHREYSKMKS 599 Query: 292 -LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L L +V DGR+ T + + TGR S QN+P + Sbjct: 600 TLEGLIRSVGGDGRIHTTFK-QTVASTGRLSSTDPNLQNIPVRT---------------- 642 Query: 351 ETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 A +RS + G + L+ AD + IE RV+A ++ + I+A+ +GED++ Sbjct: 643 --------DAGKKIRSAFVVGEGFETLLTADYSQIEMRVMAHVSEDAGLIQAYKDGEDLH 694 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 +K F+ ID+V+ E R K M L Y G A + + + Sbjct: 695 NYVGSKVFDVGIDEVTPELRRRVKAMSYGLAYGLSSYGLAAQLDIPQGEAKSIMDSYFER 754 Query: 466 VKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACE 504 + E+ + ++ A+ + GTA + Sbjct: 755 FGGVKNYLRSVVDEARKDGYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGTAAD 814 Query: 505 LVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 ++K A ++ + ++ + + V G + V R+V + + Sbjct: 815 IIKVAMVRVNRRLDSLKSRVLLQVHDELVLEVAPG------ELEEVSRIVSEEMDGAISL 868 Query: 561 VLP 563 +P Sbjct: 869 RVP 871 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 93/283 (32%), Gaps = 27/283 (9%) Query: 396 DWKIKAFANGEDIYVT-------TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + I++ I+ T T + P + + GK + A G + Sbjct: 602 EGLIRSVGGDGRIHTTFKQTVASTGRLSSTDPNLQNIPVRTDAGKKIRSAFVVGEGFETL 661 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++++ + + + ++ E H ++ + + + + + Sbjct: 662 LT-ADYSQIEMRVMAHVSEDAGLIQAYKDGEDLHNYVGSKVFDVGIDEVTPELRRRVKAM 720 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 ++ L+ + A+ + + K + V+ +R+ Sbjct: 721 SYGLA--------YGLSSYGLAAQLDIPQGEAKSIMDSYFERFGGVKNYLRSVVDEARKD 772 Query: 569 VYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----GY 622 Y+ G YL TS R + N +Q + DI+ M + Sbjct: 773 GYTSTLFGRRRYLPELTSTNRIARENAERAALNAPIQGTAADIIKVAMVRVNRRLDSLKS 832 Query: 623 DIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGL--PL 663 ++L VHDE+V E + + ++++ A L PL Sbjct: 833 RVLLQVHDELVLEV---APGELEEVSRIVSEEMDGAISLRVPL 872 >gi|227877046|ref|ZP_03995135.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256850116|ref|ZP_05555546.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|262047415|ref|ZP_06020372.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] gi|227863364|gb|EEJ70794.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|256713088|gb|EEU28079.1| DNA polymerase [Lactobacillus crispatus MV-1A-US] gi|260572389|gb|EEX28952.1| DNA polymerase [Lactobacillus crispatus MV-3A-US] Length = 887 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 77/507 (15%), Positives = 167/507 (32%), Gaps = 81/507 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ L DE + + R + +DI + +LA + +N Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAH-RLDIHTHGLDYDMLLASYL---INNENNSN 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD--------CTRANHVQAWQLFGEYCKRD 166 L HL K + + KG + P D ++ N +++ + +D Sbjct: 419 DLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKD 478 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +LF+ + E + + G +++ +++LQ A + K+L++ I Sbjct: 479 -HEQDDLFETI------EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYS 531 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRL 282 + L LF G+ + ++ +++ + + + +++ R Sbjct: 532 QAGEKF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ 590 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + + L + + SDGR+ + TGR S QN+P + Sbjct: 591 IAKIQST-YVKGLLDVIQSDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT-------- 640 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + +G D + +E RVLA ++G+ + Sbjct: 641 ----------------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQE 683 Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF G DI+ T K F+ D+V+ R K + + Y G +K Sbjct: 684 AFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRA 743 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAV 494 + + + + D + ++ A+ Sbjct: 744 QEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAI 803 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLW 521 + G+A +++K A + + +L Sbjct: 804 NSPIQGSAADIIKIAMINMQKKLDELH 830 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%) Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593 IS +R ++ + + + ++R Y++ YL ++ R++ Sbjct: 738 ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797 Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 + N +Q + DI+ M N K IV+ VHDE++ + P ++ Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKK 857 Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673 + +M +PL A+ G+ Y Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|199599523|ref|ZP_03212912.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] gi|199589592|gb|EDY97709.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus rhamnosus HN001] Length = 881 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 95/597 (15%), Positives = 193/597 (32%), Gaps = 89/597 (14%) Query: 28 AVITLCA--YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF----- 80 I + A Y D+ V + T++ S + L V +S + +F Sbjct: 324 FEIEMLADNYHIADQ-VGFFIGTKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRN 382 Query: 81 ---KKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIA 133 LG+ +P +LA P L ++ L + E+ Sbjct: 383 IVAAHRLGLHLP--DIAFDVLLASYLINPDENSNDLGKIAEDHDY-HDLPRDEDV----- 434 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + KG+ P D + D+ ++ +D E L + Sbjct: 435 -YGKGAKRQVPEDKLLFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAE 493 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + +G ++ + + +Q K L+E I G+ + L LF + + Sbjct: 494 MEIQGITLNAQTLKNMGTEFSQSIKVLEEKIYG-EAGVKFNLNSPKQLGEVLFEKLNLPV 552 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGT 308 + ++ + + + +L + + KLN+ L +A D ++ Sbjct: 553 IKKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPDHKIHTR 610 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 ++TGR S QN+P ++ +R Sbjct: 611 Y-LQTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAF 644 Query: 369 IAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSK 426 + S ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ Sbjct: 645 VPSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTP 704 Query: 427 EQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------- 474 + R K + Y G A+ + + + + + Sbjct: 705 DMRRQAKATNFGIVYGISDYGLAQNIGISRKKAKAFIDGYFEQYPKVHDYMENMVKKARE 764 Query: 475 -------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----RAKHQGV 517 Q S + ++ A+ + G+A +++K A +A + Sbjct: 765 DGYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAH 824 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 LQ L + + + A+ VP+++ V + + S + D K Sbjct: 825 LQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLVVPLKVESHYGPTWFDAK 881 Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + DI+ M K ++L VHDE++ E P +G L +M Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIM 857 >gi|328464768|gb|EGF36086.1| DNA polymerase I [Lactobacillus helveticus MTCC 5463] Length = 650 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 80/500 (16%), Positives = 160/500 (32%), Gaps = 67/500 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGLPSSLKNAC 113 ++ L DE + + R + LGI + +LA + +N Sbjct: 128 DNIKHILEDEKIKKNVFDLK--RTMVAAHRLGIHTHGLDY--DMLLASYL---INNENNS 180 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRE 172 L HL K + + KG + P D NH+ + E K+ + + Sbjct: 181 NDLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKVNAIESLKKTLLEKLK 240 Query: 173 LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 ++ E + + G +++ +++LQ A + K+L++ I Sbjct: 241 DHEQDALFDTIEIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYGQAGEKF 300 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ ++ ++ T +L IL+ + Sbjct: 301 -NLNSPKQLGHILFEKLGLPVIKKTKTGYSTAVEVLDQLKTQSPIVSEILDYRQIAKIQS 359 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + DGR+ + TGR S QN+P + Sbjct: 360 TYVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 403 Query: 350 GETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + +G D + +E RVLA ++G+ +AF G D Sbjct: 404 ---------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYD 453 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ T K F+ D+V+ R K + + Y G +K + + Sbjct: 454 IHSHTAMKIFHLESPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAQEFIDNY 513 Query: 463 SQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGT 501 + + + E+ ++ A+ + G+ Sbjct: 514 FEQYPQIEDYMNKAVQEARDKGYAETIMHRRRYLPDIHAKKYTVRAFAERTAINSPIQGS 573 Query: 502 ACELVKKAWRAKHQGVLQLW 521 A +++K A + + +L Sbjct: 574 AADIIKIAMINMQKKLDELH 593 Score = 44.7 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +V+ VHDE++ + P ++ + +M Sbjct: 570 IQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKKIVPEVMQSA 629 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 630 VK--LDVPLIADSGWGHNWY 647 >gi|256843650|ref|ZP_05549138.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|293381755|ref|ZP_06627732.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] gi|256615070|gb|EEU20271.1| DNA polymerase [Lactobacillus crispatus 125-2-CHN] gi|290921675|gb|EFD98700.1| DNA-directed DNA polymerase [Lactobacillus crispatus 214-1] Length = 887 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 77/507 (15%), Positives = 167/507 (32%), Gaps = 81/507 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ L DE + + R + +DI + +LA + +N Sbjct: 365 DNIKHILEDEKIKKNVFDLK--RTMVAAH-RLDIHTHGLDYDMLLASYL---INNENNSN 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYD--------CTRANHVQAWQLFGEYCKRD 166 L HL K + + KG + P D ++ N +++ + +D Sbjct: 419 DLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKD 478 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 +LF+ + E + + G +++ +++LQ A + K+L++ I Sbjct: 479 -HEQDDLFETI------EIPTARVLARMEMNGMKVEASTLIQLQNEFAVKLKELEDKIYS 531 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRL 282 + L LF G+ + ++ +++ + + + +++ R Sbjct: 532 QAGEKF-NLNSPKQLGHILFEKLGLPPIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQ 590 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + + + L + + SDGR+ + TGR S QN+P + Sbjct: 591 IAKIQST-YVKGLLDVIQSDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT-------- 640 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + +G D + +E RVLA ++G+ + Sbjct: 641 ----------------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQE 683 Query: 401 AFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF G DI+ T K F+ D+V+ R K + + Y G +K Sbjct: 684 AFKTGYDIHSHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRA 743 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFAV 494 + + + + D + ++ A+ Sbjct: 744 QEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTAI 803 Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLW 521 + G+A +++K A + + +L Sbjct: 804 NSPIQGSAADIIKIAMINMQKKLDELH 830 Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 15/149 (10%) Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593 IS +R ++ + + + ++R Y++ YL ++ R++ Sbjct: 738 ISRKRAQEFIDNYFEQYPQIREYMDKAVQTAREKGYAETIMHRRRYLPDIHAKKFTVRSF 797 Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 + N +Q + DI+ M N K IV+ VHDE++ + P ++ Sbjct: 798 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKIVVQVHDELIFDVPKDELETIKK 857 Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673 + +M +PL A+ G+ Y Sbjct: 858 IVPEVMQSAVK--LDVPLIADSGWGHNWY 884 >gi|229820688|ref|YP_002882214.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] gi|229566601|gb|ACQ80452.1| DNA polymerase I [Beutenbergia cavernae DSM 12333] Length = 910 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 91/552 (16%), Positives = 170/552 (30%), Gaps = 94/552 (17%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQ-YLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A D D E +L +L D H++ G + + Sbjct: 366 LAIADADGAALGIDLAEIDPADEKVLAQWLADPEAPKAVHDAKPAWHALT---GRGLEVR 422 Query: 92 RWICTSVLARTNGLPS--SLKNACLALNFSEH----LTKMEEGKALIARFCKGSIDSPPY 145 + + LA P S A L + + E G+ ++ S Sbjct: 423 GVVMDTALAAYLCHPDQRSYDLADLVVRYLHRELPRTDLDETGQGMLDLDADSGAKSAGA 482 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 + L E R +A E D E L + G D++ Sbjct: 483 RAVAVVELAG-PLAEEVADRGAQALLE---------DVELPLLRTLAEMEHDGIGADVEY 532 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE------- 258 + ++ ++ + + + L+ LF G+ ++ Sbjct: 533 LRGIEREFDAVVERAALGAYEAIGRQV-NLGSPKQLQEVLFDDLGMPKTRRTKTGYTTDA 591 Query: 259 GTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 L + H + L RL + + L +V+ DGR+ T Q A+ Sbjct: 592 DALADLYVKTEHPFLEHLLAHREAIRLRQT------VEGLLRSVAPDGRIHTTFQQTIAA 645 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK- 374 TGR S QN+P + +R + G Sbjct: 646 -TGRLSSADPNLQNIPIRT------------------------EEGYRIREGFVVGEGYE 680 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ AD + IE R++A ++G++ I+AF +GED++ ++ F P D+V+ R+ K Sbjct: 681 TLLTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHSYVGSRVFGVPTDEVTSAMRSKIKA 740 Query: 435 MELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------- 481 M L Y G +K + + + + A++ Sbjct: 741 MSYGLAYGLSAFGLSKQLSIDVAEARTLMDDYFDRFGGVRDYLSGVVAQARQVGYTETLM 800 Query: 482 ------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKD 523 + ++ A+ + G+A +L+K A H+ + +L Sbjct: 801 GRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADLIKVAMLGVHRQMGEAGMSSRLLLQ 860 Query: 524 LTEGFACVVQEG 535 + + V G Sbjct: 861 VHDELVLEVAPG 872 Score = 45.9 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 32/168 (19%), Positives = 63/168 (37%), Gaps = 10/168 (5%) Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHK 555 ++ G + V A R+K + + F Q + AR + + + Sbjct: 721 RVFGVPTDEVTSAMRSKIKAMSYGLAYGLSAFGLSKQLSIDVAEARTLMDDYFDRFGGVR 780 Query: 556 RDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + V+ +R++ Y++ G YL TS + R ++ N +Q + D++ Sbjct: 781 DYLSGVVAQARQVGYTETLMGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADLIKVA 840 Query: 614 MKNATK----NGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 M + G ++L VHDE+V E ++ L + M Sbjct: 841 MLGVHRQMGEAGMSSRLLLQVHDELVLEVAPGEREALEELVRAQMGAA 888 >gi|118462804|ref|YP_882339.1| DNA polymerase I [Mycobacterium avium 104] gi|118164091|gb|ABK64988.1| DNA polymerase I [Mycobacterium avium 104] Length = 913 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 93/529 (17%), Positives = 167/529 (31%), Gaps = 86/529 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D H + + G + LA P S LAL + Sbjct: 395 LADPGPPKALHEAK---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRY 451 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 E D + ++A + D E R L Sbjct: 452 LR-RELRAENPQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSL- 509 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 LS E + + + G +DLDL+ +LQ A + + E + I + Sbjct: 510 -LSGMELPVQRVLAGMEKAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSP 567 Query: 239 YALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSA 288 L+ LF + ++ H + L RL + Sbjct: 568 KQLQAVLFDELQMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT--- 624 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L +V+SDGR+ T A+ TGR S QN+P + + Sbjct: 625 ---VDGLLNSVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------ 668 Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + +G +L+ AD + IE R++A ++ + I+AF GED Sbjct: 669 ------------GRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGED 716 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 ++ ++AF PI++V+ E R K M L Y G ++ K + + Sbjct: 717 LHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYF 776 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + ++ + +++ A+ + G+A Sbjct: 777 ARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSA 836 Query: 503 CELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISAR 541 +++K A + + LQ+ +L A +E AR Sbjct: 837 ADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALAR 885 Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K G I+L VHDE++ E + L Sbjct: 832 IQGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALAR 885 >gi|309810696|ref|ZP_07704504.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] gi|308435327|gb|EFP59151.1| DNA-directed DNA polymerase [Dermacoccus sp. Ellin185] Length = 905 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 71/408 (17%), Positives = 141/408 (34%), Gaps = 73/408 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 +++ E + + T+ G +DLD + +L+ + +D G + Sbjct: 501 MAELELPIVEVLATMEQAGIAVDLDALHELEADYDAQVVAAQQDAWDAIGGEQVNLGSPK 560 Query: 240 ALRMYLFLITGIDL----------VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ + L H + L + ++L S+ Sbjct: 561 QLQVVLFETLGLPKTKKTKTGYTTDAEAIADLSEKAPHPFLDALLRHRDASKLRST---- 616 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L +++ DGR+ T Q A+ TGR S QN+P + S Sbjct: 617 --VQGLIKSIGDDGRIHTTYQQTIAA-TGRLSSTDPNLQNIPIRTES------------- 660 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G L+ AD + IE RV+A ++G++ I+AF +GED+ Sbjct: 661 -----------GRRIRRVFVVGEGYDCLMSADYSQIEMRVMAHLSGDEGLIQAFNDGEDL 709 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++ F +V+ E RA K M L Y G +K + + + + + Sbjct: 710 HRFVGSRVFGVEPSEVTSEMRAKVKAMSYGLAYGLSAFGLSKQLRISTAEAQRLMDGYFE 769 Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503 + ++ + +D A+ + G+A Sbjct: 770 RFGGVRDYLRQIVDDARATGYTETMMGRRRYLPDLTSDNRQRRDMAERMALNAPIQGSAA 829 Query: 504 ELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +++KKA + ++ + + V G R+ Sbjct: 830 DIMKKAMLGVDEALRAANLRSRVLLQVHDELIVEVGAGERDEVERIVR 877 Score = 48.2 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 51/137 (37%), Gaps = 11/137 (8%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGG 595 + A+R+ + + + ++ +R Y++ G YL TS + R Sbjct: 757 TAEAQRLMDGYFERFGGVRDYLRQIVDDARATGYTETMMGRRRYLPDLTSDNRQRRDMAE 816 Query: 596 KLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 ++ N +Q + DI+ + M + ++L VHDE++ E V + Sbjct: 817 RMALNAPIQGSAADIMKKAMLGVDEALRAANLRSRVLLQVHDELIVEVGAGERDEVERIV 876 Query: 649 -SLMTKNPSWAKGLPLK 664 M A +PL Sbjct: 877 REQMGAAADLA--VPLD 891 >gi|241896083|ref|ZP_04783379.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] gi|241870683|gb|EER74434.1| DNA polymerase I [Weissella paramesenteroides ATCC 33313] Length = 931 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 79/499 (15%), Positives = 160/499 (32%), Gaps = 69/499 (13%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 S + + L D T++ N+ E + K LGI + + +L + N Sbjct: 409 SPVKRILEDSTILKNVFNAK-ELYVSLKRLGIALKGVSF--DLLLVSYLLDTNDNNNDLG 465 Query: 115 ALNFSEH---LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 AL + EE A+F + D H+ + + + Sbjct: 466 ALAHDNDYYAVMTDEEVYGKGAKFAIPAA-----DADFFEHLGRKAMAINLLREPLLDRL 520 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 ++ D E L + + G +D + +L+++ + + +L++ I + Sbjct: 521 LSHEQTKLYEDIELPLTKILADMESTGITVDSEQLLQMRSKLTERLSELEQKIYQQAGHE 580 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSA 288 + + L + LF + ++ T +L + + ++ R + + Sbjct: 581 F-NIQSPKQLGVVLFEEMKYTPIKKTKTGYSTSVEVLEKMGDVPIVESILAYRQVAKIQS 639 Query: 289 ILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L + SD ++ ++TGR S QN+P Sbjct: 640 T-YVEGLLRVIHGSDSKVHTRY-LQTLTQTGRLSSVDPNLQNIP---------------- 681 Query: 348 NRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R + S+ +++ AD + IE RVLA I G+ AF NGE Sbjct: 682 --------VRIEEGRQIRKAFVPSHSDWQILSADYSQIELRVLAHITGDKNLQAAFINGE 733 Query: 407 DIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 DI+ T + F D+ V R K + + Y G +K ++ Sbjct: 734 DIHAATARRIFGIKDDEPVEGNVRRQAKAVNFGIVYGISDFGLSKNIGVSRKEAKAIIET 793 Query: 462 FSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIG 500 + + D ++ + A+ + G Sbjct: 794 YFDQYPDVKKWSDDIIASARETGYVETIAHRRRYLPDIKAKRFNARSFAERTAMNSPIQG 853 Query: 501 TACELVKKAWRAKHQGVLQ 519 +A +++K A + Q Sbjct: 854 SAADIIKIAMIKVQAAIEQ 872 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 8/118 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 A+ + K+ ++ S+R Y + + YL ++ R++ + Sbjct: 786 EAKAIIETYFDQYPDVKKWSDDIIASARETGYVETIAHRRRYLPDIKAKRFNARSFAERT 845 Query: 598 TENI-VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q + DI+ M + G ++L VHDE++ E P + + L Sbjct: 846 AMNSPIQGSAADIIKIAMIKVQAAIEQAGMQAHMLLQVHDELIFEAPASEMADLEKLV 903 >gi|254831966|ref|ZP_05236621.1| DNA polymerase I [Listeria monocytogenes 10403S] Length = 875 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 74/485 (15%), Positives = 156/485 (32%), Gaps = 62/485 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ + + I + +LA PS + ++ Sbjct: 363 SDQTKVVYDAKKTIVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD-- 417 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 418 -YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDL 476 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D D + ++ + K L+ I L + L + Sbjct: 477 ELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLAGEEF-NINSPKQLGV 535 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF + V ++ T +L + D IL + L + Sbjct: 536 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 631 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++V R K + + Y G ++ + ++ + + + Sbjct: 691 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 750 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + S + ++ A+ + G+A +++KKA Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILM 810 Query: 514 HQGVL 518 + ++ Sbjct: 811 SERLV 815 >gi|16803605|ref|NP_465090.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47096730|ref|ZP_00234315.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|224499777|ref|ZP_03668126.1| DNA polymerase I [Listeria monocytogenes Finland 1988] gi|224501495|ref|ZP_03669802.1| DNA polymerase I [Listeria monocytogenes FSL R2-561] gi|254828200|ref|ZP_05232887.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|254898268|ref|ZP_05258192.1| DNA polymerase I [Listeria monocytogenes J0161] gi|254912239|ref|ZP_05262251.1| DNA polymerase I [Listeria monocytogenes J2818] gi|254936566|ref|ZP_05268263.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284801956|ref|YP_003413821.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284995098|ref|YP_003416866.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|16410994|emb|CAC99643.1| DNA polymerase I [Listeria monocytogenes EGD-e] gi|47014914|gb|EAL05862.1| DNA polymerase I [Listeria monocytogenes str. 1/2a F6854] gi|258600588|gb|EEW13913.1| DNA polymerase I [Listeria monocytogenes FSL N3-165] gi|258609161|gb|EEW21769.1| DNA polymerase I [Listeria monocytogenes F6900] gi|284057518|gb|ADB68459.1| DNA polymerase I [Listeria monocytogenes 08-5578] gi|284060565|gb|ADB71504.1| DNA polymerase I [Listeria monocytogenes 08-5923] gi|293590215|gb|EFF98549.1| DNA polymerase I [Listeria monocytogenes J2818] Length = 875 Score = 216 bits (549), Expect = 1e-53, Method: Composition-based stats. Identities = 74/485 (15%), Positives = 156/485 (32%), Gaps = 62/485 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ + + I + +LA PS + ++ Sbjct: 363 SDQTKVVYDAKKTIVAMNR---IGLAISGITFDIMLASYLLNPSDSIDDFTSVAVRHD-- 417 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 418 -YTEVETDEAVYGKGAKRSTPEESIVAAHLARKAVAIADLEKRLVDDLEKNEQLALMEDL 476 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D D + ++ + K L+ I L + L + Sbjct: 477 ELPLTFVLAEMEMQGVSVDTDRLEDMKVELGGRLKTLEASIHSLAGEEF-NINSPKQLGV 535 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF + V ++ T +L + D IL + L + Sbjct: 536 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 631 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++V R K + + Y G ++ + ++ + + + Sbjct: 691 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 750 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 + S + ++ A+ + G+A +++KKA Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAMILM 810 Query: 514 HQGVL 518 + ++ Sbjct: 811 SERLV 815 >gi|256394812|ref|YP_003116376.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] gi|256361038|gb|ACU74535.1| DNA polymerase I [Catenulispora acidiphila DSM 44928] Length = 905 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 91/550 (16%), Positives = 172/550 (31%), Gaps = 84/550 (15%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFK-KTLGIDIPS 90 A+A D D T+ L L D + H++ + + + + Sbjct: 361 LAFATADGTAAYVDATQLDPADETALAAWLADPARQKILHDAKGPSLALAARGFTLAGVA 420 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + LA++ L+ + L+ + F + R Sbjct: 421 ADTALEAYLAQSGRRSFDLEPLAEEV-LGRRLSPAGADENQGTLFADEDAE-----AERQ 474 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 L R A + L +D E L + + G ID L L+ Sbjct: 475 MAAAHAVLDLADALRGKLAETGAEQLL---TDIELPLVGVLAEMEQVGIAIDERLFQDLE 531 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT---------- 260 + + E K + + L+ LF G+ + Sbjct: 532 KGFSGEAAKEVDAARAEAGVETLNLGSPKQLQEVLFENLGMPKTKKIKTGYTTDADSLAW 591 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 L++ H + L + +NRL + + LS++VS D R+ T A+ TGR Sbjct: 592 LQAQTQHPFLDHLLRWREVNRLKTV------VEGLSKSVSPDTRIHTTYNQMIAA-TGRL 644 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVA 379 S QN+P + +R IA G + L+ A Sbjct: 645 SSVDPNLQNIPIRTL------------------------EGQQIRKAFIAGPGYESLMTA 680 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++ + I+AF +GED++ T AK F+ V E R K M L Sbjct: 681 DYSQIEMRIMAHLSEDAGLIEAFTSGEDLHNTVAAKVFDVEATAVEPEHRRRIKAMSYGL 740 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-------------- 481 Y G ++ ++ + Q + ++ Sbjct: 741 AYGLSAFGLSQQLGIETGEAAKMMEDYFQRFGGVRDYLHDLVVQARATGYTETMFGRRRY 800 Query: 482 -------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGF 528 + ++ A+ + G+A +++K A +G+ ++ + + Sbjct: 801 LPDLASDNRQRREMAERMALNAPIQGSAADIIKVAMIRVREGLREQQLKSRMLLQVHDEL 860 Query: 529 ACVVQEGGSI 538 + G + Sbjct: 861 VLEIAPGEAP 870 Score = 40.1 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 7/58 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652 +Q + DI+ M + ++L VHDE+V E V L M Sbjct: 824 IQGSAADIIKVAMIRVREGLREQQLKSRMLLQVHDELVLEIAPGEAPRVEELVRREMG 881 >gi|34581200|ref|ZP_00142680.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] gi|5912320|emb|CAB56103.1| DNA polymerase I [Rickettsia sibirica] gi|28262585|gb|EAA26089.1| DNA polymerase I (POL I) [Rickettsia sibirica 246] Length = 875 Score = 215 bits (548), Expect = 1e-53, Method: Composition-based stats. Identities = 86/493 (17%), Positives = 163/493 (33%), Gaps = 87/493 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L D+++ + ++ L K DI + + A + GL Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQ------- 426 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATREL 173 N + + K + +I K I+ Y T W+L T L Sbjct: 427 -KNLFKEVLKETWIENIIIASAKIVINFIALYKQT------IWELKDN-------KTFRL 472 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + S+ + + + + G +D + + +L E KL+E+I L+ Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287 + L LF + S + +L++ DL+L + Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++L + + + T ++ TGR S QN+P + Sbjct: 586 KNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------- 632 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + +R IA G KL+ AD + IE R+L+ IA D +AF N +D Sbjct: 633 -----------SEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T + FN +++ E R K + + Y G AK ++++ Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYF 741 Query: 464 QNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACE 504 K + + +A + H ++ A+ + GT + Sbjct: 742 AEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNAD 801 Query: 505 LVKKAWRAKHQGV 517 ++K A Q + Sbjct: 802 IIKIAMINLDQEI 814 >gi|5912324|emb|CAB56079.1| DNA polymerase I [Rickettsia montanensis] Length = 875 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 127/367 (34%), Gaps = 54/367 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 S+ + + + + G +D + + +L E KL+E+I L+ + Sbjct: 473 YSNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIGSPK 531 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293 L LF + S T + +L++ DL+L + + Sbjct: 532 QLGEILFEKMQLPFGKASAKTSSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 591 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + + + T ++ TGR S QN+P + Sbjct: 592 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------------- 632 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T Sbjct: 633 -----SEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + FN +++ E R K + + Y G AK ++++ K Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747 Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + +A + H ++ A+ + GT +++K A Sbjct: 748 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQLAERAAINAPIQGTNADIIKIAM 807 Query: 511 RAKHQGV 517 Q + Sbjct: 808 INLDQEI 814 >gi|282882006|ref|ZP_06290647.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] gi|281298036|gb|EFA90491.1| DNA-directed DNA polymerase [Peptoniphilus lacrimalis 315-B] Length = 885 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 68/360 (18%), Positives = 135/360 (37%), Gaps = 55/360 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + + G R D++++ ++ E I + L+ +I K D + Sbjct: 484 YVNVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADEQF-NINSPK 542 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + ++ ++ T +L L D IL S ++ L Sbjct: 543 QLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKIKNTYIDGLR 602 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + ++ GR+ + TGR S QN+P + Sbjct: 603 DVINKKTGRIHSRFN-QTVTSTGRISSTEPNLQNIPIKT--------------------- 640 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R +++S G LV +D + IE RVLA ++ + + I AFA+G DI+ T ++ Sbjct: 641 ---HEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASE 697 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+TP D+VS E R++ K + + Y G ++ + + + + Sbjct: 698 VFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYIDNYLGHFQGIKK 757 Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + ++ + ++ A+ + GTA +++K A Sbjct: 758 YMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPIQGTAADIIKIAM 817 Score = 45.5 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 13/111 (11%) Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAIS 606 + + + +H+ + Y+ ++ R++G ++ N +Q + Sbjct: 753 QGIKKYMNDIIHVGTEKGYVETLLHRR---RYIPELKAKNFNIRSFGERIALNTPIQGTA 809 Query: 607 RDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 DI+ M ++L +HDE+V + PD V +C +M Sbjct: 810 ADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE---VAEVCEIM 857 >gi|326692715|ref|ZP_08229720.1| DNA polymerase I [Leuconostoc argentinum KCTC 3773] Length = 893 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 80/494 (16%), Positives = 167/494 (33%), Gaps = 75/494 (15%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 +L + + ++ N + ++FK+ LG+ + + +LA ++ N Sbjct: 372 ELRAVIENPAIIKNVFNVKAQLVMFKR-LGLALQGVDF--DFLLAAYLLDTTANDNELST 428 Query: 116 L--NFSEHLTKMEEGKALIARFCKGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 L F ++ EE A+F + +A+ + + D Sbjct: 429 LAQRFDVYVQPDEEIYGKGAKFAVPEDVDRVLMHLGQKADALMQLETPTLAALTD----- 483 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +++ +D E L + + RG I+ + + R + ED + L G Sbjct: 484 --HEQMHLYTDIELPLAHVLADMEYRGIAINQARLAE-IGTDLTGRIQAIEDAIYLEAGE 540 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK-----DLILNRLASSG 286 + L + LF G+ ++ ++ + + +LA D +L + Sbjct: 541 KFNINSPKQLGVLLFEKMGLPVIKKTK--TGYSTAVDVLEKLAHQAPIVDYVLQYRQLAK 598 Query: 287 SAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V+ D ++ ++TGR S QN+P + Sbjct: 599 LKSTYVDGLLAVVNQKDSKIHTRF-LQTLTQTGRLSSVDPNLQNIPMRS----------- 646 Query: 346 ALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R+ + S ++ AD + IE RVLA + G+ +AF N Sbjct: 647 -------------DEGRQIRTAFVPSQPDWQIFGADYSQIELRVLAHMTGDKNMQQAFLN 693 Query: 405 GEDIYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 GEDI+ T F V+ QR K + + Y G A + + Sbjct: 694 GEDIHAETARAVFGLDSQAPVNAVQRRTAKAVNFGIVYGISDFGLANNLGISRAQAKQFI 753 Query: 460 QQFS----------QNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDKL 498 + +N+K+ + + + + + ++ A+ + Sbjct: 754 DTYFKEFPKVHEWMENIKAVAHAQGYVETIAKRRRYLPDIHAKNFNLRSFAERTAMNSPI 813 Query: 499 IGTACELVKKAWRA 512 G+A +++K A Sbjct: 814 QGSAADIIKIAMIK 827 Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M ++L VHDE++ E P + ++ L Sbjct: 813 IQGSAADIIKIAMIKVADALAENNMQARMLLQVHDELIFEAPTSEIPALTALV 865 >gi|282862068|ref|ZP_06271131.1| DNA polymerase I [Streptomyces sp. ACTE] gi|282563093|gb|EFB68632.1| DNA polymerase I [Streptomyces sp. ACTE] Length = 903 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 89/538 (16%), Positives = 158/538 (29%), Gaps = 75/538 (13%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D E L + D V HN+ + + + LA Sbjct: 373 DPAELDEADEQALAAWIADPRRPKVMHNAK---NALRVFPEQGWRLEGVSMDTALAAYLV 429 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P A AL ++ + + G+ D D A L + Sbjct: 430 KPGRRSFALDALAVEYLGRELAPAPSADGQLAFGADDRAEADALMAQARAVLDLGEAFAV 489 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 R E L D E +L + G D + +++ A ++ ++ Sbjct: 490 RLEEV-----GATGLLHDMELPTSILLARLERHGIAADRSHLEGMEQQFAGAVQQAVKEA 544 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + L+ LF + ++ + + L + Sbjct: 545 HAAVGREF-NLGSPKQLQEVLFGELALPKTKKTKTGFTTDADALAWLAAQTEHELPVIML 603 Query: 285 SGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 KL L + + DGR+ T A+ TGR S QN+P + Sbjct: 604 RHREQAKLRVTVEGLIKTIGQDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------ 656 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKI 399 +R + G + L+ AD + IE RV+A ++ + I Sbjct: 657 ------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDAGLI 698 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF +GED++ T ++ F V E R K M L Y G ++ A Sbjct: 699 EAFTSGEDLHTTVASQVFGVDKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEA 758 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + + Q + E+ + ++ A+ Sbjct: 759 RGLMDTYFQRFGGVRDYLHRVVEEARATGYTETILGRRRYLPDLNSDNRQRREAAERMAL 818 Query: 495 KDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + GTA ++VK A R + +LQ+ ++ A +E RR Sbjct: 819 NAPIQGTAADIVKVAMLHVDRALTEARLTSRMLLQVHDEIVLEIAAGEREQVEEILRR 876 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 46/278 (16%), Positives = 88/278 (31%), Gaps = 27/278 (9%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK I+ T + P + + G+ + G + Sbjct: 616 EGLIKTIGQDGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G V Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVDKSAVDA 725 Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + L L+ + AR + + + +H V+ +R Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARGLMDTYFQRFGGVRDYLHRVVEEARA 785 Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620 Y++ + G YL S + R ++ N +Q + DI+ M + + Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLHVDRALTEAR 845 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656 ++L VHDEIV E V + M+ Sbjct: 846 LTSRMLLQVHDEIVLEIAAGEREQVEEILRREMSTAVE 883 >gi|300813963|ref|ZP_07094261.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511926|gb|EFK39128.1| DNA-directed DNA polymerase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 885 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 68/360 (18%), Positives = 135/360 (37%), Gaps = 55/360 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + + G R D++++ ++ E I + L+ +I K D + Sbjct: 484 YINVELPLIEVLANMEIVGIRTDVNILNEIDEKIKERINDLEFNIYKDADEQF-NINSPK 542 Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 L LF + ++ ++ T +L L D IL S ++ L Sbjct: 543 QLGQILFEKMDLPVIKKTKTGYSTSADVLEKLRGKSLIIDNILEYRKISKIKNTYIDGLR 602 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + ++ GR+ + TGR S QN+P + Sbjct: 603 DVINKKTGRIHSRFN-QTVTSTGRISSTEPNLQNIPIKT--------------------- 640 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R +++S G LV +D + IE RVLA ++ + + I AFA+G DI+ T ++ Sbjct: 641 ---HEGRLIRKALLSSEGSSLVDSDYSQIELRVLASLSNDTYMINAFADGLDIHRKTASE 697 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+TP D+VS E R++ K + + Y G ++ + + + + Sbjct: 698 VFHTPYDEVSDELRSMAKAVNFGIVYGISDYGLSQNLNIPRKEAKTYIDNYLGHFQGIKK 757 Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + ++ + ++ A+ + GTA +++K A Sbjct: 758 YMNDIIHVGTEKGYVETLLHRRRYIPELKAKNFNIRSFGERIALNTPIQGTAADIIKIAM 817 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 13/111 (11%) Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAIS 606 + + + +H+ + Y+ ++ R++G ++ N +Q + Sbjct: 753 QGIKKYMNDIIHVGTEKGYVETLLHRR---RYIPELKAKNFNIRSFGERIALNTPIQGTA 809 Query: 607 RDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 DI+ M ++L +HDE+V + PD V +C +M Sbjct: 810 ADIIKIAMVGVYKELKKKNLKAKLILQIHDELVVDAPDEE---VAEVCEIM 857 >gi|309389718|gb|ADO77598.1| DNA polymerase I [Halanaerobium praevalens DSM 2228] Length = 880 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 60/378 (15%), Positives = 124/378 (32%), Gaps = 60/378 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + + G ++D D + L E + + + + KL + Sbjct: 470 YQEIELPLIKVLAQMELNGVKVDKDWLANLSEKLGKRLAIITDKAHKLAGEEF-NLNSPK 528 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 L LF G+ ++ ++ + S + +L + L S + KL ++ Sbjct: 529 QLGEILFEKLGLPVIKRTKTG--YSTNASVLEKLEGKHEIIPLISEYRELAKLKSTYIDS 586 Query: 295 LSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + ++ + + TGR S QN+P + Sbjct: 587 LPPLINDETAKIHTSFN-QMVTATGRLSSTEPNLQNIPIRT------------------- 626 Query: 354 ADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R I + L+ D + IE RV A ++G+ +AF N DI+ T Sbjct: 627 -----EEGREIRKAFIPSRSDMILLAVDYSQIELRVFAHLSGDQKLKEAFNNEADIHTET 681 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKS 468 A+ F + V+ + R KV+ + Y A + + ++ + Sbjct: 682 AAEVFEVKAEAVTPDLRRHAKVINFGIAYGMSAYGLSQDLDIPVEEAQTYIDKYFERFSG 741 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + + + S + + A+ + GTA +++K Sbjct: 742 VKKYMEQTIEKVKKLGYAETMFGRRRYIPEINSSNYHRRSFAERTAINTPVQGTAADIMK 801 Query: 508 KAWRAKHQGVLQLWKDLT 525 K+ + + + DL Sbjct: 802 KSMLDVYSCLKKSELDLN 819 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKL 597 A+ + K+ + + ++L Y++ G Y+ S R++ + Sbjct: 727 EAQTYIDKYFERFSGVKKYMEQTIEKVKKLGYAETMFGRRRYIPEINSSNYHRRSFAERT 786 Query: 598 TENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCS 649 N VQ + DI+ + M + ++ +I+L VHDE+V E + Sbjct: 787 AINTPVQGTAADIMKKSMLDVYSCLKKSELDLNILLQVHDELVFEVNRNDLDEAAELIKE 846 Query: 650 LM 651 M Sbjct: 847 KM 848 >gi|57168476|ref|ZP_00367610.1| DNA polymerase I (polA) [Campylobacter coli RM2228] gi|57020284|gb|EAL56958.1| DNA polymerase I (polA) [Campylobacter coli RM2228] Length = 847 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 89/514 (17%), Positives = 165/514 (32%), Gaps = 95/514 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN ++ + + + + +++ T +LA + LAL + T E Sbjct: 349 IGHNLKYDFKIIENNFKLSL-PQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFES 407 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF----KRLIPLSDGE 184 K + + +A +Y D T + K L P Sbjct: 408 ------LVKKGENFASVELEKA---------CKYAAEDAYITLRFYLYFLKNLEPHLLDL 452 Query: 185 RDLWLLD-----QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + D + + G ++D + L + E K L E+I L + + Sbjct: 453 AKNYEFDFIKIIMMMEENGIKLDTHALEILMKKFESEIKILSEEIYALCEDRF-NLNSPK 511 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 + LF + L +G + +L + + KL Sbjct: 512 QVGDILFEK--LKLPSGKKGKTGYSTDEKVLNELLDKHPVISKILDYRELAKLYSTYCEP 569 Query: 295 LSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + D R+ + G + TGR S QN+P Sbjct: 570 LLKLALKDENSRIYSSFLQTG-TATGRLSSKDPNLQNIPAH------------------- 609 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 G + +SC IA G + D + IE R+LA + ++ + AF N EDI+ T Sbjct: 610 -----GQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKLLNAFKNDEDIHART 664 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKS 468 F + + E R+I K + L Y G K K A+ ++++ +N S Sbjct: 665 AIMIFG----ESNYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAKTYIEKYFENFTS 720 Query: 469 TSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 ++ + + E+ Y ++ L G+A +++K Sbjct: 721 IKSYFEKVKNEAKANGFISTLSGRKRYFDFENAKPMQVAMYERESINSILQGSAADIIKF 780 Query: 509 AW-------RAKHQGVLQLWKDLTEGFACVVQEG 535 A + +LQ+ +L + E Sbjct: 781 AMLEIAKILNQDKRLILQIHDELIFEVKDELCEN 814 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK---NGYDIVLTVHDE 631 G Y + ++ M+ Y + +I+Q + DI+ M K ++L +HDE Sbjct: 743 GRKRYFDFENAKPMQVAMYERESINSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDE 802 Query: 632 IVSETPDTPYFS-VGTLCSLM 651 ++ E D + V +M Sbjct: 803 LIFEVKDELCENFVKKTSDIM 823 >gi|295425309|ref|ZP_06818012.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] gi|295065085|gb|EFG55990.1| DNA-directed DNA polymerase I [Lactobacillus amylolyticus DSM 11664] Length = 887 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 80/513 (15%), Positives = 167/513 (32%), Gaps = 77/513 (15%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 ++ L DE + + ++ LGI + +LA + +N Sbjct: 365 DNIKHILEDEKIKKNVFDLK-RSMVGAHRLGIHTHGLDY--DMLLASYL---VNNENNSN 418 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATREL 173 L HL K + + KG + P D NH+ + E K+ + + Sbjct: 419 DLGEIAHLYGDYSVKTDLEVYGKGKSEHIPDDDDELFNHLASKINAIESLKKPLLEKLKD 478 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ E + + G ++ +++LQ A + K+L++ I Sbjct: 479 HEQDALFDTIEIPTARVLARMEMNGMKVKASTLIQLQNEFAVQLKELEDKIYSQAGEKF- 537 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L LF G+ ++ ++ +++ + + + +++ R + + Sbjct: 538 NLNSPKQLGHILFEKLGLPVIKKTKTGYSTSVEVLDQLKTQSPIVSEILDYRQIAKIQST 597 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L + + DGR+ + TGR S QN+P + Sbjct: 598 -YVKGLLDVIQPDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT--------------- 640 Query: 350 GETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + +G D + +E RVLA ++G+ +AF G D Sbjct: 641 ---------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQEAFKTGYD 690 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ T K F+ V+ R K + + Y G +K + + Sbjct: 691 IHSHTAMKIFHLDSPKDVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKRAKEFIDNY 750 Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501 + + D E+ + ++ A+ + G+ Sbjct: 751 FEQYPQIRDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGS 810 Query: 502 ACELVKKAWRA----------KHQGVLQLWKDL 524 A +++K A K + VLQ+ +L Sbjct: 811 AADIIKIAMINMQKKLEEMHLKTKMVLQVHDEL 843 Score = 46.7 bits (109), Expect = 0.012, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +VL VHDE++ + P +V + +M Sbjct: 807 IQGSAADIIKIAMINMQKKLEEMHLKTKMVLQVHDELIFDVPKDELETVKKIVPEVMQSA 866 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 867 V--RLDVPLIADSGWGHNWY 884 >gi|322412776|gb|EFY03684.1| DNA polymerase I [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 880 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 72/514 (14%), Positives = 160/514 (31%), Gaps = 70/514 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW +++ T+ S + +DL + + ++ + F+R + LG+D+ + Sbjct: 338 IIGFAWGHGE-QIYASTDLSLLSTDLFKKVFEKPIATY----DFKRSKVLLSHLGLDLVA 392 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA ++ + + KG + P Sbjct: 393 PSY--DARLANYLLSNVEDNELTTIARLFTDISLEADDSI----YGKGVKRAVPEKELLL 446 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H+ + + ++ + E L + + G +++ + + Sbjct: 447 GHLARKVKVLLDSRAPMVEKLADHDQIALYHEIELPLANILAKMEIEGIKVNRATLQDMA 506 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 E + L ++I + + L LF + L + + + Sbjct: 507 EQNKAIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVL 565 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + +DG++ ++TGR S Sbjct: 566 ERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDP 624 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P +R S L+ +D + I Sbjct: 625 NLQNIP------------------------VRLEQGRLIRKAFTPSQEDAVLLSSDYSQI 660 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ- 442 E R+LA I+G++ I AF G DI+ +T + F + V+ R K + + Y Sbjct: 661 ELRLLAHISGDEHLIAAFNEGADIHTSTAMRVFGIEKAEDVTANDRRNAKAVNFGIVYGI 720 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478 G + + + + + + Sbjct: 721 SDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDI 780 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 S + ++ A+ + G+A +++K A Sbjct: 781 NSRNFNVRSFAERTAINSPIQGSAADILKIAMIN 814 >gi|188586506|ref|YP_001918051.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351193|gb|ACB85463.1| DNA polymerase I [Natranaerobius thermophilus JW/NM-WN-LF] Length = 930 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 60/380 (15%), Positives = 127/380 (33%), Gaps = 63/380 (16%) Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D+ R ++ + E L + + RG ++D ++ +++ I ++ I Sbjct: 508 EDILQERNQWQL---YKNIELPLAFILARMEFRGIKVDARVLTEMEANIDHRLSEISTKI 564 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 ++ + L LF + +V ++ + L+ D + +L Sbjct: 565 FEIAGEEF-NLNSPKQLGYILFEKLQLPVVKKTK--TGYSTDAKTLETLSHDYEICKLLL 621 Query: 285 SGSAILKLNT-----LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + KL T L + +S G++ T + TGR S QN+P Sbjct: 622 DYRQLHKLKTTYLVGLKDLISKTTGKIHTTYN-QTITATGRLSSTDPNLQNIP------- 673 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDW 397 +R + N + + AD + IE R+LA ++ + Sbjct: 674 -----------------IKLEEGRKIRKGFVIQNSDQLFLAADYSQIELRILAHVSEDTN 716 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+AF +DI+ T A+ F +V++E R+ K + + Y G ++ Sbjct: 717 LIQAFQEQQDIHTQTAAQVFEVESTQVTREMRSHAKAVNFGIVYGISDYGLSRQLGISRK 776 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWMQDQYPEF 492 + + + D ++ + ++ Sbjct: 777 QAKTYIDNYLTRFSGVKEYMDQIVNQAKMNGYVETLYNRRRNLPDISHRNFNIRSAAERT 836 Query: 493 AVKDKLIGTACELVKKAWRA 512 A+ + GTA +++K A Sbjct: 837 AINTPIQGTAADIIKDAMVK 856 >gi|14916560|sp|Q9RLB6|DPO1_RICHE RecName: Full=DNA polymerase I; Short=POL I gi|5912332|emb|CAB56073.1| DNA polymerase I [Rickettsia helvetica] Length = 921 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 67/367 (18%), Positives = 127/367 (34%), Gaps = 54/367 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 SD + + + + G ++D + + +L E KL+E+I L+ + Sbjct: 519 YSDIDLPICFILDKMEKVGIKVDANYLKQLSTEFGAEILKLEEEIFALSGTKF-NIGSLK 577 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293 L LF + S + +L++ DL+L + + Sbjct: 578 QLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 637 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + + + T ++ TGR S QN+P + Sbjct: 638 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------------- 678 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T Sbjct: 679 -----SEGNKIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 733 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + FN +++ E R K + + Y G AK ++++ K Sbjct: 734 CQIFNLQKHELTNEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 793 Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + +A + H ++ A+ + GT +++K A Sbjct: 794 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 853 Query: 511 RAKHQGV 517 Q + Sbjct: 854 INLDQEI 860 >gi|254459249|ref|ZP_05072671.1| DNA polymerase I [Campylobacterales bacterium GD 1] gi|207084142|gb|EDZ61432.1| DNA polymerase I [Campylobacterales bacterium GD 1] Length = 905 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 96/556 (17%), Positives = 197/556 (35%), Gaps = 88/556 (15%) Query: 9 ETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ-SAMPSDLLQ---YLRDE 64 ET G+ Y E+ + +++++D+ +P + + L + Sbjct: 334 ETIVAFDTETTGLD-Y-EKDKLVGFSFSFNDDEAFYVPFAHFYLGVPDQISEKDAALAMK 391 Query: 65 TV---MCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + V HN F+ + L D+ + + + +LA S+L L+ +H Sbjct: 392 KIFNSKVVGHNIKFDLHFVSRFLNDDMLNI-YSDSMILAWLINPESALGLDKLSDKLLDH 450 Query: 122 -----LTKMEEGKALIARFCKGSIDSPPYDCTRA-NHVQAWQLFGEYCKRDVEATRELFK 175 +++G+ D+ Y A ++ + LF E K +AT + + Sbjct: 451 TMLGFKDTVKKGETFA---SVELEDASKYAAEDAYITLKLFNLFNEKLKLQ-DATHLIDE 506 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E + G R+D + + + + L + I + + Sbjct: 507 S----QNVEVPFITTLLGMEKDGIRVDAEFLEVFLVEVKETLLNLTKTIYEQAGTEF-NI 561 Query: 236 RQTYALRMYLFLITGIDLVDMSE---GTLKSIL-----SHSNITQLAKDLILNRLASSGS 287 T L + LF G+ + ++ T +++L H I+ L + + +L S+ Sbjct: 562 NSTKQLGVILFEHLGLPVGKKTKTGYSTDENVLSSLKDKHEIISSLLEYREIYKLYSTYI 621 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L +L + +GR+ + G + TGR S QN+P +T Q L Sbjct: 622 EPLLKLSLED---KEGRIHTSFVQTG-TATGRLSSKNPNLQNIP---------ARTSQGL 668 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GKKL+ D + IE R+LA + + + AF +D Sbjct: 669 K---------------IREAFVAPEGKKLIGIDYSQIELRLLAHFSQDAVLVDAFRANKD 713 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFS 463 I++ T F ++ + +RA+ K + L Y G K ++++ Sbjct: 714 IHLQTAIALFG---EEEAPSKRAVAKTVNFGLLYGMGQKKLSETLGITTKEAKEIIEKYF 770 Query: 464 QNVKSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTAC 503 ++ + T+ + E+ + Y +V G+A Sbjct: 771 ESFPTVKTYFRSIVDNSKEMGYVETLLKRRRYFDYETASPMFRAAYDRESVNSVFQGSAS 830 Query: 504 ELVKKAWRAKHQGVLQ 519 +L+K + + + Sbjct: 831 DLIKLSMNKIATVIKE 846 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 8/121 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A+ + K ++ +S+ + Y + Y + T+ M Y + Sbjct: 761 EAKEIIEKYFESFPTVKTYFRSIVDNSKEMGYVETLLKRRRYFDYETASPMFRAAYDRES 820 Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650 ++ Q + D++ M K ++L +HDE++ E + + Sbjct: 821 VNSVFQGSASDLIKLSMNKIATVIKEEKLNAKMLLQIHDELIFEVDADEAEMLGNRFKEI 880 Query: 651 M 651 M Sbjct: 881 M 881 >gi|313618759|gb|EFR90664.1| DNA polymerase I [Listeria innocua FSL S4-378] Length = 552 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 62/477 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ + + I K +LA PS + ++ Sbjct: 40 SDETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHD-- 94 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 95 -YTEVETDEAIYGKGAKRSTPEENIVAAHLARKAVAIAELEKRLVDDLEKNEQLALMEDL 153 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D + ++ +A K L+E I L + L + Sbjct: 154 ELPLTFVLAQMEMQGVSVDTKRLENMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 212 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF + V ++ T +L + D IL + L + Sbjct: 213 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 272 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 273 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 307 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 308 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 367 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 D+V R K + + Y G ++ + ++ + + + Sbjct: 368 VEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 427 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 428 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 484 Score = 44.7 bits (104), Expect = 0.056, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M + ++L VHDE++ E P+ + + Sbjct: 472 IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIV 524 >gi|255321945|ref|ZP_05363095.1| DNA polymerase I [Campylobacter showae RM3277] gi|255301049|gb|EET80316.1| DNA polymerase I [Campylobacter showae RM3277] Length = 863 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 100/586 (17%), Positives = 187/586 (31%), Gaps = 118/586 (20%) Query: 7 DIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----SAMPSDLLQYLR 62 D ET + A + ++ ++DE + + S+ Sbjct: 306 DTETT-DVD---------TQNARLVGFSFCFNDEEAYYVPVSHEYLGAPKQASEKFAAWA 355 Query: 63 DETVMC---VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN-F 118 + + N ++ + K+ LG++ P + T +LA SS+ LA + Sbjct: 356 ISQIYKGCVIGQNLKYDFKVVKRNLGLE-PPVNFKDTMILAWLMDPGSSVGMDALAKRLY 414 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K E+ F ++++ +Y D T + +K + Sbjct: 415 DYDTIKFEDVVKRGETFASVALENAA----------------KYAAEDAWITLKFYKSFL 458 Query: 179 PLSDGERDLWLLDQT----------INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L D E L L D + G I+ + + L + K L +I +LT Sbjct: 459 NLLDPEL-LALADTHEFAFILTLFDMEREGIAINREKMQNLILRNDAKIKALTSEIYELT 517 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSIL-SHSNITQLAKDLILN 280 + L LF + + ++ L ++ H I +L + L Sbjct: 518 GENF-NINSVKQLGSVLFEHLKLPVKKKTKTGYSTDEAVLAELIDEHPVIEKLLEYRELY 576 Query: 281 RLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 +L S+ L D R+ G + TGR S QN+P + Sbjct: 577 KLQSTYC-----EPLLNLAKKDANSRIYTNFIQTG-TSTGRLSSKNPNLQNIPAR----- 625 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 G + VR C A + V D + IE R+LA + ++ Sbjct: 626 -------------------GALAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEAL 666 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 ++AFAN EDI+ T F + + RA+ K + L Y G A + Sbjct: 667 LRAFANDEDIHARTAISIFGSAEGQ----NRAVAKSINFGLIYGMGSSKLANQVSITRAE 722 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAV 494 ++++ + + F + + + + Y AV Sbjct: 723 AKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRLFDFTTATPMQTAMYEREAV 782 Query: 495 KDKLIGTACELVKKAWRAKHQG---VLQLWKDLTEGFACVVQEGGS 537 G+A +++K A ++ + + VQ+G + Sbjct: 783 NTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDELIFEVQDGYA 828 Score = 40.9 bits (94), Expect = 0.68, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 86/284 (30%), Gaps = 31/284 (10%) Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVT--TY-------------AKAFNTPIDKVS 425 + EA VLA + E I+ ++Y TY ++ + I + Sbjct: 549 YSTDEA-VLAELIDEHPVIEKLLEYRELYKLQSTYCEPLLNLAKKDANSRIYTNFIQTGT 607 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQ----QFSQ-NVKSTSTFEDWEQAE 479 R K L GA D +SQ ++ + F E Sbjct: 608 STGRLSSKNPNLQNIPARGALAKDVRGCFEAKSDFSFVGLDYSQIELRLLAHFSRDEALL 667 Query: 480 SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSIS 539 +D + A+ + G+A + ++ + G++ + Sbjct: 668 RAFANDEDIHARTAIS--IFGSAEGQNRAVAKSINFGLI---YGMGSSKLANQVSITRAE 722 Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGKLT 598 A+ K + + +++ + G + T+ M+ Y + Sbjct: 723 AKEYIERYFKAFPTIKGFLEGIKTAAKNEGFVRTLLGRKRLFDFTTATPMQTAMYEREAV 782 Query: 599 ENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDEIVSETPDT 639 I Q + DI+ M ++L +HDE++ E D Sbjct: 783 NTIFQGSAADIIKMAMVKIRPLLSPRARMLLQIHDELIFEVQDG 826 >gi|315303334|ref|ZP_07873960.1| DNA polymerase I [Listeria ivanovii FSL F6-596] gi|313628295|gb|EFR96802.1| DNA polymerase I [Listeria ivanovii FSL F6-596] Length = 875 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 78/477 (16%), Positives = 157/477 (32%), Gaps = 62/477 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ I + LG + +LA PS + ++ Sbjct: 363 SDASKVVYDAKKAMIAMHR-LGYAV--SGITFDIMLASYLLNPSDSIDDFTSVAIRHD-- 417 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 418 -YTEVETDEAVYGKGAKRSTPEESVVAPHLARKAVAIAILEKRLLDDLEKNEQLALMEDL 476 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D + ++ +A K L+E I L + + L + Sbjct: 477 ELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLAEEEF-NINSPKQLGV 535 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF G+ V ++ T +L + D IL + L + Sbjct: 536 ILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 631 EGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++V R K + + Y G ++ + ++ + + + Sbjct: 691 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQ 750 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 807 >gi|15806710|ref|NP_295430.1| DNA-directed DNA polymerase [Deinococcus radiodurans R1] gi|7404361|sp|P52027|DPO1_DEIRA RecName: Full=DNA polymerase I; Short=POL I gi|6459477|gb|AAF11264.1|AE002012_4 DNA-directed DNA polymerase [Deinococcus radiodurans R1] Length = 956 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 81/463 (17%), Positives = 137/463 (29%), Gaps = 78/463 (16%) Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-------- 182 L A + + P R + W T L + L PL D Sbjct: 501 LYAYLLDPANTNMPVVAKRYLD-REWPA---DAPTRAAITGHLLRELPPLLDDARRKMYD 556 Query: 183 -GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + + RG ++D D + L L+ I + R L Sbjct: 557 EMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEF-HIRSPKQL 615 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 L+ + ++ T + + S + L + L + KL + + Sbjct: 616 ETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIP 675 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 V+ GRL T A TGR S QN+P + Sbjct: 676 NLVNPHTGRLHTTFA-QTAVATGRLSSLNPNLQNIPIRS--------------------- 713 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R IA +G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 714 ---ELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQ 770 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471 V QR K + + Y A + ++ + Sbjct: 771 VLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFIEIYFATYPGIRR 830 Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + S + ++ A + GTA +++K A Sbjct: 831 YINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPIQGTAADIMKLAM 890 Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +LQ+ +L E + ++V Sbjct: 891 VQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVME 933 >gi|291461229|ref|ZP_06600302.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] gi|291378194|gb|EFE85712.1| DNA polymerase I [Fusobacterium periodonticum ATCC 33693] Length = 514 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 142/391 (36%), Gaps = 61/391 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E L + + +G +ID+ + +E K ++ I + + Sbjct: 112 LIQNEMPLIPVLSLMERKGIKIDVSYFKNYSLELEKELAKTEKAIYEEAGEEF-NINSPK 170 Query: 240 ALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGSAILKLNTL 295 L LF+ + ++ G ++ ++ L+L+ + ++TL Sbjct: 171 QLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKLKTTYVDTL 230 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 V S+ R+ + G + TGR S QN+P + Sbjct: 231 PNLVDSNSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD------------------- 270 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R +A GK L+ D + +E RVL ++ ++ IKA+ +D++ T + Sbjct: 271 -----GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIKAYREEKDLHDLTARR 325 Query: 416 AFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 FN D V++EQR I K++ ++ Y G AK K ++++ + + Sbjct: 326 IFNLSDSDDVTREQRTIAKIINFSIIYGKTAFGLAKELKIPVKDASEYIKKYFEQYPRVT 385 Query: 471 TFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 TFE +S + ++ Q AV + GTA E++KK Sbjct: 386 TFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKV 445 Query: 510 WRA-----KHQGVLQLWKDLTEGFACVVQEG 535 K + + L + + V+E Sbjct: 446 MLKVYEVLKDKDDIALLLQVHDELIFEVEEN 476 Score = 45.5 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ + ++ N ++Q + ++L + M K+ ++L V Sbjct: 406 GRKRYISGIDSKNKTIKAQAERMAVNTVIQGTAAEVLKKVMLKVYEVLKDKDDIALLLQV 465 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E + + +M Sbjct: 466 HDELIFEVEENSVEKYSEILADIM 489 >gi|289434845|ref|YP_003464717.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171089|emb|CBH27631.1| DNA polymerase I [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 875 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 155/477 (32%), Gaps = 62/477 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ + + LG + +LA PS ++ Sbjct: 363 SDASKVVYDAKKTMVAMHR-LGYAV--SGITFDIMLASYLLNPSDSIADFTSVAIRHD-- 417 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 418 -YTEVETDEAVYGKGAKRSTPEERVVAPHLARKAVAIAVLEKRLLDDLEKNEQLALMEDL 476 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D + ++ +A K L+E I L + L + Sbjct: 477 ELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 535 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF G+ V ++ T +L + D IL + L + Sbjct: 536 ILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 595 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 596 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 630 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 631 EGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 690 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++V R K + + Y G ++ + ++ + + + Sbjct: 691 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQ 750 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 751 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 807 >gi|300811971|ref|ZP_07092429.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497050|gb|EFK32114.1| DNA-directed DNA polymerase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 887 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 62/384 (16%), Positives = 129/384 (33%), Gaps = 69/384 (17%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + + G ++ + +L+ A K+L+E I K + L Sbjct: 487 IELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLG 545 Query: 243 MYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF G+ ++ ++ +++ + + + D++ R S + + L + Sbjct: 546 VILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQST-YVKGLLDV 604 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + DGR+ + TGR S QN+P + Sbjct: 605 IDERDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT----------------------- 640 Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + S + D + IE RVLA ++ + +AF G DI+ T K Sbjct: 641 -EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKI 699 Query: 417 FNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+ +D+V+ QR K + + Y G +K + ++ + Sbjct: 700 FHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQA 759 Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D + + ++ A+ + G+A +++K A Sbjct: 760 YMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAM 819 Query: 511 RA----------KHQGVLQLWKDL 524 K + V+Q+ +L Sbjct: 820 INMQKKLDELGLKTKMVVQVHDEL 843 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M K + G V+ VHDE++ + P ++ + S+M Sbjct: 807 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 866 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 867 VK--LDVPLVADAGWGHDWY 884 >gi|283131335|dbj|BAI63340.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis] Length = 924 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 57/371 (15%), Positives = 117/371 (31%), Gaps = 58/371 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 514 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 572 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 573 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 632 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 633 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 676 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 677 ---------LEQGRLIRKAFTPSQEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 727 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F + V+ R K + + Y G + + + Sbjct: 728 IHTSTAMRVFGIDKAEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 787 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 788 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 847 Query: 502 ACELVKKAWRA 512 A +++K A Sbjct: 848 AADILKIAMIN 858 >gi|15893129|ref|NP_360843.1| DNA polymerase I [Rickettsia conorii str. Malish 7] gi|81527867|sp|Q92GB7|DPO1_RICCN RecName: Full=DNA polymerase I; Short=POL I gi|15620336|gb|AAL03744.1| DNA polymerase I (POL I) [Rickettsia conorii str. Malish 7] Length = 875 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 86/493 (17%), Positives = 163/493 (33%), Gaps = 87/493 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L D+++ + ++ L K DI + + A + GL Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQ------- 426 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATREL 173 N + + K + +I K I+ Y T W+L T L Sbjct: 427 -KNLFKEVLKETWIENIIIESAKIVINFIALYKQT------IWELKDN-------KTFRL 472 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + S+ + + + + G +D + + +L E KL+E+I L+ Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287 + L LF + S + +L++ DL+L + Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++L + + + T ++ TGR S QN+P + Sbjct: 586 KNTYTDSLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------- 632 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + +R IA G KL+ AD + IE R+L+ IA D +AF N +D Sbjct: 633 -----------SEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T + FN +++ E R K + + Y G AK ++++ Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYF 741 Query: 464 QNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACE 504 K + + +A + H ++ A+ + GT + Sbjct: 742 AEYKGVQEYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNTD 801 Query: 505 LVKKAWRAKHQGV 517 ++K A Q + Sbjct: 802 IIKIAMINLDQEI 814 >gi|152990932|ref|YP_001356654.1| DNA polymerase I [Nitratiruptor sp. SB155-2] gi|151422793|dbj|BAF70297.1| DNA polymerase I [Nitratiruptor sp. SB155-2] Length = 888 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 102/597 (17%), Positives = 195/597 (32%), Gaps = 127/597 (21%) Query: 7 DIETRSPQPLPKVGV----WAYAE-QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 D ET K + +AY+E +A + + ++ L + L Sbjct: 324 DTET-DDLDTKKANLVGFSFAYSEEKAYYVPIGHNYLGVGDQV-----------GLDKAL 371 Query: 62 RDETVMC----VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 + + + HN F+ L + GID K + T +LA SS+ +A Sbjct: 372 EAISKIFEHTIIGHNLKFDLSLLYRY-GID-EKKDIVDTMILAWLVDPGSSVGLESVAKR 429 Query: 118 FSEHLTK-MEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 F +H +E F + SID+ +Y D T ++ + Sbjct: 430 FLDHDMIAYKETVKKGEDFSQVSIDAA----------------CKYASEDAVITYMVYFK 473 Query: 177 LIPLSD-------------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L+ E + G +ID+ +L+ + + ++ + Sbjct: 474 LLDALRKQGASHLIDEAKKVEFPFVNTLIHMEQAGIKIDIPFFEELKSSLEKRIDEITQK 533 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG-------TLKSIL-SHSNITQLAK 275 I + G + T L LF + + ++ TL+++ H I L + Sbjct: 534 IYEYAGGEF-NINSTKQLAAILFEKLKLPPLKKTKSGYSTNETTLQALKDKHPIIPLLLE 592 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 L +L S+ ++ L D R+ + G + TGR + QN+P + Sbjct: 593 YRELYKLKSTY-----IDPLINYAKRDPKHRIYTSFIQTG-TATGRLASKNPNLQNIPIK 646 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA G+ L+ D + IE R+LA + Sbjct: 647 T------------------------ELGRKIRYGFIAGEGRLLIGIDYSQIELRLLAHFS 682 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 + ++AF G DI++ T K F + +KE+R I K + L Y G A+ Sbjct: 683 KDPALLEAFQKGRDIHMETAIKLFGK---EHAKEKRNIAKSINFGLIYGMGSRKLAETLG 739 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ--------------------Y 489 ++ + + + ++ + + + + Y Sbjct: 740 ISTKEAKAIIESYFASFPTVKSYLESVENFAKTHGYVETLLKRRRYFDFAHASGAQLAAY 799 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACVVQEGGSISA 540 A G+A +L+K A + ++ + + VQE + Sbjct: 800 LREATNTVFQGSAADLIKMAMNKIKNVIDEKQLEAKILLQIHDELIFEVQENQAQEL 856 Score = 45.9 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 Y + A + + Y + T + Q + D++ M I+L +HDE Sbjct: 784 RYFDFAHASGAQLAAYLREATNTVFQGSAADLIKMAMNKIKNVIDEKQLEAKILLQIHDE 843 Query: 632 IVSETPDTPYFSV-GTLCSLM 651 ++ E + + +M Sbjct: 844 LIFEVQENQAQELAEEFKQIM 864 >gi|313124192|ref|YP_004034451.1| DNA polymerase i [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280755|gb|ADQ61474.1| DNA polymerase I [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 887 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 62/384 (16%), Positives = 129/384 (33%), Gaps = 69/384 (17%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E + + G ++ + +L+ A K+L+E I K + L Sbjct: 487 IELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEAGEEF-NLNSPKQLG 545 Query: 243 MYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 + LF G+ ++ ++ +++ + + + D++ R S + + L + Sbjct: 546 VILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQISKIQST-YVKGLLDV 604 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + DGR+ + TGR S QN+P + Sbjct: 605 IDERDGRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT----------------------- 640 Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R + S + D + IE RVLA ++ + +AF G DI+ T K Sbjct: 641 -EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAFKTGYDIHAHTAMKI 699 Query: 417 FNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F+ +D+V+ QR K + + Y G +K + ++ + Sbjct: 700 FHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKEFIDEYFEQYPGIQA 759 Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D + + ++ A+ + G+A +++K A Sbjct: 760 YMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINSPIQGSAADIMKIAM 819 Query: 511 RA----------KHQGVLQLWKDL 524 K + V+Q+ +L Sbjct: 820 INMQKKLDELGLKTKMVVQVHDEL 843 Score = 45.9 bits (107), Expect = 0.021, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M K + G V+ VHDE++ + P ++ + S+M Sbjct: 807 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 866 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 867 VK--LDVPLVADAGWGHDWY 884 >gi|229587139|ref|YP_002845640.1| DNA polymerase I [Rickettsia africae ESF-5] gi|228022189|gb|ACP53897.1| DNA polymerase I [Rickettsia africae ESF-5] Length = 875 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 86/493 (17%), Positives = 163/493 (33%), Gaps = 87/493 (17%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLG--IDIPSKRWICTSVLARTNGLPSSLKNACL 114 + L D+++ + ++ L K DI + + A + GL Sbjct: 377 IFNLLTDKSIKKITYSLK---PLLKFYANQSHDITAIEDLELMQYALSAGLSQ------- 426 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPP-YDCTRANHVQAWQLFGEYCKRDVEATREL 173 N + + K + +I K I+ Y T W+L T L Sbjct: 427 -KNLFKEVLKEPWIENIIIESAKIVINFIALYKQT------IWELKDN-------KTFRL 472 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 + S+ + + + + G +D + + +L E KL+E+I L+ Sbjct: 473 Y------SNIDLPICFILDKMEKVGITVDANYLKQLSAEFGTEILKLEEEIFALSGTKF- 525 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGS 287 + L LF + S + +L++ DL+L + Sbjct: 526 NIGSPKQLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKL 585 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++L + + + T ++ TGR S QN+P + Sbjct: 586 KNTYTDSLPKQIDNITHKVHTTFLQTSTTTGRLSSQEPNLQNVPIRS------------- 632 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + +R IA G KL+ AD + IE R+L+ IA D +AF N +D Sbjct: 633 -----------SEGNQIRKAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDD 681 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 I+ T + FN +++ E R K + + Y G AK ++++ Sbjct: 682 IHTQTACQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYF 741 Query: 464 QNVKSTSTFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACE 504 K + + +A + H ++ A+ + GT + Sbjct: 742 AEYKGVQKYMEQTKAFASSNGYVTNCFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNAD 801 Query: 505 LVKKAWRAKHQGV 517 ++K A Q + Sbjct: 802 IIKIAMINLDQEI 814 >gi|118469541|ref|YP_888130.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] gi|118170828|gb|ABK71724.1| DNA polymerase I [Mycobacterium smegmatis str. MC2 155] Length = 908 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 77/423 (18%), Positives = 147/423 (34%), Gaps = 74/423 (17%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ L LS E + + G +DL ++ +LQ A + + E Sbjct: 492 LDQELARIDSLSLLSRMELPVQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYS 551 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKD 276 + I + L+ LF + L+S+ H + L Sbjct: 552 VIGKQI-NLGSPKQLQAVLFDELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAH 610 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 RL + ++ L +V+SDGR+ T A+ TGR S QN+P + + Sbjct: 611 RDATRLKVT------VDGLLNSVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA 663 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395 +R + G +L+ AD + IE R++A ++ + Sbjct: 664 ------------------------GRRIRDAFVVGEGYAELMTADYSQIEMRIMAHLSRD 699 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF GED++ ++AF+ PID+V+ E R K M L Y G A+ K Sbjct: 700 AGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKIS 759 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 + ++Q+ + + +S + +++ Sbjct: 760 TEEAKVQMEQYFDRFGGVRDYLRDVVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAE 819 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVA 544 A+ + G+A +++K A Q + ++ + + V EG ++ Sbjct: 820 RAALNAPIQGSAADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLV 879 Query: 545 NVP 547 Sbjct: 880 REH 882 >gi|34556857|ref|NP_906672.1| DNA polymerase I [Wolinella succinogenes DSM 1740] gi|34482572|emb|CAE09572.1| DNA POLYMERASE I [Wolinella succinogenes] Length = 898 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 99/525 (18%), Positives = 172/525 (32%), Gaps = 83/525 (15%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL---ALNFSEHLT 123 V HN F+ + LG R + +LA G P L Sbjct: 393 VGHNLKFDLEILHGALGFYPK-GRIGDSMILAWLLDSGAPVGLDFQMKRWFGHEMIPFEK 451 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 +++G+ + + + D A + ++L E KR E+ L + L Sbjct: 452 MVKKGETFAQVALEEAAEYAGEDA-LATYRLYFRLEEELKKRGCESLLGLAESL------ 504 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E + +RG R+D + +L + ++L ++ G + T L Sbjct: 505 EFPFIHTLIEMEERGIRVDTEFFARLNAEVEVRIRELSGEVFAHAGGEF-NLNSTQQLGG 563 Query: 244 YLFLITGIDLVDMSE-------GTLKSILS-HSNITQLAKDLILNRLASSGSAILKLNTL 295 LF + ++ L +L H I + + L +L S+ L L Sbjct: 564 VLFEKLHLPSGKKTKTGYSTDEKVLSELLGVHPIIEPILEYRELFKLKSTYIEPLTRFAL 623 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + R+ + G + TGR S QN+P Sbjct: 624 QD---KNRRIYTSFLHTG-TSTGRLSSKNPNLQNIP------------------------ 655 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 A +R IAS G L+ D + IE R+LA + + + AF G DI+ T K Sbjct: 656 VKTEAGRKIRQGFIASEGNLLISLDYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKK 715 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTST 471 F ++ +K R I K + L Y G++ + + + + + + Sbjct: 716 IFG---EREAKAHRGIAKTINFGLIYGMGSRKLSETLRISPKEAKGYIDSYFASFPTVKS 772 Query: 472 F--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 F + + + + + Y AV G+A +L+K A Sbjct: 773 FLKAQEEFALEHGYTETLLGRRRYFEFQQAPEYQKAAYLREAVNCIFQGSAADLIKLAMN 832 Query: 512 AKHQGVLQ---LWKDL---TEGFACVVQEGGSISARRVANVPRLV 550 + Q LW L E +E AR +A V + Sbjct: 833 EIRRRFAQEESLWLLLQVHDELIFEAPKEHAEALARELALVMEGI 877 Score = 44.0 bits (102), Expect = 0.090, Method: Composition-based stats. Identities = 32/195 (16%), Positives = 61/195 (31%), Gaps = 17/195 (8%) Query: 474 DWEQAESHHLWMQDQYPEF-----AVKDKLIGTACELVKKAWRAKHQGVLQ-----LWKD 523 D+ Q E L Q P A D TA ++ + H+G+ + L Sbjct: 680 DYSQIELRLLAHFSQDPALVAAFKAGADIHYETAKKIFGEREAKAHRGIAKTINFGLIYG 739 Query: 524 LTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNT 582 + A+ + K + + Y++ G Y Sbjct: 740 MGSRKLSETLRISPKEAKGYIDSYFASFPTVKSFLKAQEEFALEHGYTETLLGRRRYFEF 799 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYD-----IVLTVHDEIVSETP 637 + ++ Y + I Q + D++ M + ++L VHDE++ E P Sbjct: 800 QQAPEYQKAAYLREAVNCIFQGSAADLIKLAMNEIRRRFAQEESLWLLLQVHDELIFEAP 859 Query: 638 DTPYFSVG-TLCSLM 651 ++ L +M Sbjct: 860 KEHAEALARELALVM 874 >gi|313899467|ref|ZP_07832977.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] gi|312955755|gb|EFR37413.1| DNA-directed DNA polymerase [Clostridium sp. HGF2] Length = 861 Score = 214 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 86/562 (15%), Positives = 174/562 (30%), Gaps = 100/562 (17%) Query: 15 PLPKVGVWAYA----EQAVIT-LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCV 69 L + G YA E L +A + + + + L++L++E Sbjct: 304 DLLQDGALVYANVDNESYYDAQLYGFAISLQDRTEYIELSDALQDTAFLEWLKEENGK-- 361 Query: 70 AHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 ++++ F L + ++A K+ E Sbjct: 362 ---AVYDAKNFYHALHKNNIPFADVTFDVMIAAFL-----------VDGTLSDYDKLAEK 407 Query: 129 KALIARFCKGSI--DSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD---- 182 K + ++ + + +D+ A + R + + + Sbjct: 408 YQFDRSLLKDDVFGKKGKGKLVDSDEAARYAMAQADYLQDLVAKLDTALREMEMKELFTT 467 Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G L + ++ + + + L I ++ + L Sbjct: 468 IEMPLTHVLYAMEKEGVVTSLSTLDEIAKATSDKIDALSAKIYEIAGMEF-NINSPKQLA 526 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSE 297 L+ G+ + K + + +LA + L K+ + LS+ Sbjct: 527 GILYDELGL------KAGKKRSTAADVLEKLASQHPMIPLLLEHRKYQKIYSTYAVGLSK 580 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V DG++ ++TGR S QN+ Sbjct: 581 HVLKDGKIHTIFNQI-QTQTGRLSSSEPNLQNIS------------------------VR 615 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +AS G L+ AD + IE R+LA +A E+ I AF +G DI+ T + F Sbjct: 616 DEEGKEIRKAFVASEGHVLLSADYSQIELRMLAHMANEEVMIDAFNHGIDIHTKTAMQIF 675 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + D V R K + + Y G ++ + ++ + + F Sbjct: 676 DVEHDAVDANMRRSAKTVNFGIVYGQSDFGLSEQLGITRKEAHAFIDKYFASYPNIKNFM 735 Query: 474 DWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510 D A + M++ A+ + G+A +L+K A Sbjct: 736 DTTIAFCEEHGYVKTLFNRRRYIKEISDKNYMMREFGKRAAMNAPIQGSAADLIKLAMIH 795 Query: 511 --------RAKHQGVLQLWKDL 524 + K + +LQ+ +L Sbjct: 796 IYKKMQEEQVKSRMILQIHDEL 817 >gi|313889726|ref|ZP_07823368.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] gi|313121771|gb|EFR44868.1| DNA-directed DNA polymerase [Streptococcus pseudoporcinus SPIN 20026] Length = 881 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 59/401 (14%), Positives = 126/401 (31%), Gaps = 64/401 (15%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G +++ ++++ E L ++I L + L Sbjct: 480 IELPLANVLAKMEIAGIKVNKLTLMEMAEQNRNIIDALTQEIYDLAGEEF-NINSPKQLG 538 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSE 297 LF + L + + + +LA + I KL + L + Sbjct: 539 SILFEKMQLPLTMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQSTYLIGLQD 598 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + DG++ ++TGR S QN+P + Sbjct: 599 YIMEDGKIHTRYV-QDLTQTGRLSSTDPNLQNIPIR------------------------ 633 Query: 358 GLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R S + L+ +D + IE RVLA I+G++ I AF + DI+ T + Sbjct: 634 MEQGRLIRKAFTPSSDDWLLLSSDYSQIELRVLAHISGDEHLIAAFNDNADIHTATAMRV 693 Query: 417 FNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F + V+ R K + + Y G + + + + Sbjct: 694 FGIEKEADVTANDRRNAKAVNFGIVYGISDFGLSNNLGISRQKARDYIDTYFERYPGIKK 753 Query: 472 FED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + D S + ++ A+ + G+A +++K A Sbjct: 754 YMDAVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGSAADILKIAM 813 Query: 511 RAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545 + ++ ++ + + V + + R++ Sbjct: 814 INLDKALVDGEFKAKMLLQVHDEIVLEVPKQELAAVRQLVK 854 >gi|325685808|gb|EGD27881.1| DNA-directed DNA polymerase I [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 889 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 83/518 (16%), Positives = 166/518 (32%), Gaps = 86/518 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKT----LGIDIPSKRWICTSVLARTN--GLPSS 108 S L L D V N +F+ K+T + I ++ +LA +S Sbjct: 366 SPLKGMLEDSAVQK---N-VFD---LKRTTYGLYRLGIKAESLTFDLLLASYLVDNEKNS 418 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L + + K L + P D NH+ K + Sbjct: 419 NDLGELVQGYDYYDLK----TDLEVYGKGKNAKIPADDAVFFNHLAGKTAAIAALKDSLL 474 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++ E + + G ++ + +L+ A K+L+E I K Sbjct: 475 KQLKDHEQDDLYDSIELPTARVLAKMEMNGIKVQPSRLKELENDFAVRLKELEEKIYKEA 534 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + L + LF G+ ++ ++ +++ + + + D++ R S Sbjct: 535 GEEF-NLNSPKQLGVILFEKLGLPVIKKTKTGYSTSVEVLNQLKEQSPVVSDILEYRQIS 593 Query: 285 SGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 + + L + + DGR+ + TGR S QN+P + Sbjct: 594 KIQST-YVKGLLDVIDKRDGRIHTRY-LQTLTATGRLSSVDPNLQNIPART--------- 642 Query: 344 IQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + S + D + IE RVLA ++ + +AF Sbjct: 643 ---------------EEGKQIRKAFVPSSPDGYIYSCDYSQIELRVLAHVSADPNMQEAF 687 Query: 403 ANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 G DI+ T K F+ +D+V+ QR K + + Y G +K Sbjct: 688 KTGYDIHAHTAMKIFHLSSVDEVTSLQRRRAKAVNFGIVYGISDYGLSKNLDISRKQAKE 747 Query: 458 DLQQFSQNVKSTSTFEDW---------------------EQAESHHLWMQDQYPEFAVKD 496 + ++ + + D + + ++ A+ Sbjct: 748 FIDEYFEQYPGIQAYMDRAVKDAREKGYAETIMHRRRYLPDIHAKNFNVRSFAERTAINS 807 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A K + V+Q+ +L Sbjct: 808 PIQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDEL 845 Score = 45.9 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 10/80 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDI--VLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M K + G V+ VHDE++ + P ++ + S+M Sbjct: 809 IQGSAADIMKIAMINMQKKLDELGLKTKMVVQVHDELIFDVPADELETIQKIVPSVMQAA 868 Query: 655 PSWAKGLPLKAE-GYEAKRY 673 +PL A+ G+ Y Sbjct: 869 VK--LDVPLVADAGWGHDWY 886 >gi|296395192|ref|YP_003660076.1| DNA polymerase I [Segniliparus rotundus DSM 44985] gi|296182339|gb|ADG99245.1| DNA polymerase I [Segniliparus rotundus DSM 44985] Length = 903 Score = 214 bits (545), Expect = 3e-53, Method: Composition-based stats. Identities = 88/558 (15%), Positives = 165/558 (29%), Gaps = 98/558 (17%) Query: 38 DDEPVKLWDRTE----QSAMPSDLLQY---------LRDETVMCVAHNSLFERILFKKTL 84 D L +A+ ++ L L D H + + + Sbjct: 350 DGGRAWLIAVASPDGSGAAIKTEALTAHDTAALGAWLADPAAPKAFHEAKWAAHALR--- 406 Query: 85 GIDIPSKRWICTSVLARTNGLPS---SLKNACLALNFSEHLTKMEEGKALIARFCKGSID 141 G LA P L + G+ ++ D Sbjct: 407 GQGFSIAGVTTDIGLAAYIARPGQRSFQLPDLAVRYLRRQLGPDDSGQKQLSLLDAEQDD 466 Query: 142 SPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRI 201 + AN + ++ L E L + + + G + Sbjct: 467 N-----AEANGAVSEAAAIRELGEALDDVLAKAGSADLLHTMELPLTFVLGAMEEAGIAV 521 Query: 202 DLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----- 256 D D + L + ++ E + I + L++ LF G+ Sbjct: 522 DQDALAGLHADFSARVQQAAESAYAVIGKEI-NLGSPKQLQVVLFDELGMPKTKKTKTGH 580 Query: 257 --SEGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 L+ + H ++ L + RL ++ L +AV DGR+ T + Sbjct: 581 TTDADALQWLFERTEHPFLSHLLEHRDATRLMTT------AQGLIKAVGPDGRIHTTFR- 633 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 + TGR S QN+P + + +R + Sbjct: 634 QDVAATGRLSSTDPNLQNIPVRT------------------------EEARRIRGVFVVG 669 Query: 372 NGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRA 430 G + L+ AD + IE R++A ++G++ I+AF GED++ ++AF PID+V E R Sbjct: 670 EGHEALMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNFVASRAFGVPIDQVGAELRR 729 Query: 431 IGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH----- 481 K M L Y G A+ ++ + + E+ Sbjct: 730 RVKAMSYGLAYGLSAFGLAQQLGVSGEEAKAQMEAYFARFGGVRDYLREVVEEARRKGYT 789 Query: 482 ----------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR------AKHQGVLQ 519 + + A+ + G+A +++K A A + Sbjct: 790 ETLFGRRRYLPDLTSDNQQQRAVAERAALNAPIQGSAADIIKVAMIHVAEALAARNMRSR 849 Query: 520 LWKDLTEGFACVVQEGGS 537 + + + V EG Sbjct: 850 MLLQVHDELVLEVAEGEQ 867 >gi|313633103|gb|EFS00003.1| DNA polymerase I [Listeria seeligeri FSL N1-067] Length = 566 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 155/477 (32%), Gaps = 62/477 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ + + LG + +LA PS ++ Sbjct: 54 SDASKVVYDAKKTMVAMHR-LGYAV--SGITFDIMLASYLLNPSDSIADFTSVAIRHD-- 108 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 109 -YTEVETDEAVYGKGAKRSTPEESVVAPHLARKAVAIAVLEKRLLDDLEKNEQLSLMEDL 167 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D + ++ +A K L+E I L + L + Sbjct: 168 ELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 226 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF G+ V ++ T +L + D IL + L + Sbjct: 227 ILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 286 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 287 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 321 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 322 EGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 381 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++V R K + + Y G ++ + ++ + + + Sbjct: 382 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQ 441 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 442 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 498 >gi|15674390|ref|NP_268564.1| DNA polymerase I [Streptococcus pyogenes M1 GAS] gi|13621480|gb|AAK33285.1| DNA-directed DNA polymerase I [Streptococcus pyogenes M1 GAS] Length = 880 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 127/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVNVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDRAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|116630048|ref|YP_815220.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] gi|116095630|gb|ABJ60782.1| DNA polymerase I [Lactobacillus gasseri ATCC 33323] Length = 896 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 77/499 (15%), Positives = 162/499 (32%), Gaps = 68/499 (13%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L Q L D+ + + + + +DI ++ +LA + +N Sbjct: 376 PLRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYL---VNNENNSND 429 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L HL K + + KG + P D H+ A E K+ + + + Sbjct: 430 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPEDDEFFEHLAAKVAVIEKLKQPLLEKLKDHE 489 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E + + + G +++ ++ +L A + ++L+ I + + Sbjct: 490 QDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEF-NL 548 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-- 293 L LF + + ++ + + + QL + I K+ Sbjct: 549 NSPKQLGHILFEKLNLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDYRQIAKIQNT 606 Query: 294 ---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L E + D R+ + TGR S QN+P + Sbjct: 607 YVKGLLECIQPDSRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT---------------- 649 Query: 351 ETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S +G D + +E RVLA ++G++ +AF +G DI Sbjct: 650 --------DEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQEAFKSGYDI 700 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T K F+ D+V+ R K + + Y G +K + + Sbjct: 701 HAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIDNYF 760 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + + D ++ + ++ A+ + G+A Sbjct: 761 EQYPQIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSA 820 Query: 503 CELVKKAWRAKHQGVLQLW 521 +++K A + + +L Sbjct: 821 ADIIKIAMINMQKKLDELH 839 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +VL VHDE++ + P ++ + +M Sbjct: 816 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 875 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 876 VK--LDVPLIAD 885 >gi|282856785|ref|ZP_06266046.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] gi|282585408|gb|EFB90715.1| DNA-directed DNA polymerase [Pyramidobacter piscolens W5455] Length = 866 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 125/383 (32%), Gaps = 62/383 (16%) Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 R +E +++ + L + RG R+D + +L L + ++ + E Sbjct: 449 ARSMEEKIAAQNMTRVMNEIDLPLIPSLIGMERRGIRLDREKMLALSRELERQLNAITEK 508 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK----DLIL 279 + + I + + LF G+ +V ++ S + QL + + Sbjct: 509 VYEAAGCEI-NLNSPKQIGELLFEKLGLPVVKKTK--TGYSTDVSVLEQLREICGARCEI 565 Query: 280 NRLASSGSAILK-----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + K + L A DG + T + + TGR S QNLP Sbjct: 566 PGQLLEYRELQKMASGFVQPLLSAAGGDGLIHSTFESLT-TGTGRLSSRDPNMQNLP--- 621 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIA 393 +R C+I S G AD + IE RVLA ++ Sbjct: 622 ---------------------TYSGWGQRIRECLIPSQPGHCFAAADYSQIELRVLAHLS 660 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFK 449 G+ I+ F + DI+ T A F P D V+KE R K + L Y A Sbjct: 661 GDPQLIEIFNSDRDIHTETAAMIFGLPADAVTKELRRSAKTVSFGLIYGMSVFGLASRLG 720 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL--------------------WMQDQY 489 T + + + + + + + +S +D Sbjct: 721 TDRNTAFQIMDAYFAALPGVREYMETSKKKSLEFGYTSTLFGRRRPMDEIATGNQTKDHQ 780 Query: 490 PEFAVKDKLIGTACELVKKAWRA 512 A+ + GTA ++ K A Sbjct: 781 KRVAINAPIQGTAADITKIAMNK 803 >gi|313637951|gb|EFS03259.1| DNA polymerase I [Listeria seeligeri FSL S4-171] Length = 567 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 62/477 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ + + LG +LA PS ++ Sbjct: 55 SDASKVVYDAKKTMVAMHR-LGY--TVSGITFDIMLASYLLNPSDSIADFTSVAIRHD-- 109 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 110 -YTEVETDEAVYGKGAKRSTPEESIVAPHLARKAVAIAVLEKRLLDDLEKNEQLALMEDL 168 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D + ++ +A K L+E I L + L + Sbjct: 169 ELPLTFVLAQMEMQGVSVDTKRLEDMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 227 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF G+ V ++ T +L + D IL + L + Sbjct: 228 ILFEKLGLPAVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 287 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 288 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 322 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 323 EGRKIRQVFVPSQPGWKIFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 382 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 ++V R K + + Y G ++ + ++ + + + Sbjct: 383 VEKEEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKDAKDFIDRYFVSYPAVKEYMQ 442 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 443 DIVRFAKEKGYXETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 499 >gi|302550714|ref|ZP_07303056.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] gi|302468332|gb|EFL31425.1| DNA polymerase I [Streptomyces viridochromogenes DSM 40736] Length = 888 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 77/514 (14%), Positives = 153/514 (29%), Gaps = 70/514 (13%) Query: 68 CVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 + HN+ +F + + + LA P AL+ ++ Sbjct: 381 KILHNAKGAMRVFAEHGW---SVEGVTMDTALAAYLVKPGRRSFDLDALSLEYLHRELAP 437 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 + G + + L + R E R D E Sbjct: 438 AAEADGQLAFGEDEGAEAEALMIQARAVLDLGEAFESRLEEVGAADLLR-----DMELPT 492 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 L + G D + ++++ A ++ ++ + L+ LF Sbjct: 493 SALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQLQEVLFG 551 Query: 248 ITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDG 303 + ++ + D L + KL L + +++DG Sbjct: 552 ELALPKTKRTKTGYTTDADALAWLAGQTDNELPVIMLRHREQAKLRVTVEGLIKTIAADG 611 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T A+ TGR S QN+P + Sbjct: 612 RIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------------------------DEGRA 646 Query: 364 VRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T ++ F Sbjct: 647 IRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTAASQVFAVEPT 706 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 V E R K M L Y G ++ A+ + + + + Sbjct: 707 AVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERFGGVRDYLRRAVD 766 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 E+ + ++ A+ + GTA ++VK A + Sbjct: 767 EARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAMLNVDSAL 826 Query: 518 L------QLWKDLTEGFACVVQEGGSISARRVAN 545 ++ + + V G +A + Sbjct: 827 KDAGLTSRMLLQVHDEIVLEVAPGERATAEELVR 860 >gi|238853764|ref|ZP_04644130.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282851273|ref|ZP_06260638.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311110324|ref|ZP_07711721.1| DNA polymerase I [Lactobacillus gasseri MV-22] gi|238833573|gb|EEQ25844.1| DNA polymerase I [Lactobacillus gasseri 202-4] gi|282557241|gb|EFB62838.1| DNA-directed DNA polymerase [Lactobacillus gasseri 224-1] gi|311065478|gb|EFQ45818.1| DNA polymerase I [Lactobacillus gasseri MV-22] Length = 886 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 77/499 (15%), Positives = 162/499 (32%), Gaps = 68/499 (13%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L Q L D+ + + + + +DI ++ +LA + +N Sbjct: 366 PLRQMLEDKKIKKNVFDIKRTYVGLHR---LDIDAEGLDYDMLLASYL---VNNENNSND 419 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 L HL K + + KG + P D H+ A E K+ + + + Sbjct: 420 LGEVAHLYDDYSVKTDLEVYGKGKKQAVPEDDEFFEHLAAKVAVIEKLKQPLLEKLKDHE 479 Query: 176 RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E + + + G +++ ++ +L A + ++L+ I + + Sbjct: 480 QDDLYETIEIPVAFVLAKMEITGIKVEASVLNQLGNDFAVKLQELEHKIYQQAGEEF-NL 538 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN-- 293 L LF + + ++ + + + QL + I K+ Sbjct: 539 NSPKQLGHILFEKLNLPPIKKTKTGYSTSVE--VLEQLKMKSPIVSEILDYRQIAKIQNT 596 Query: 294 ---TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L E + D R+ + TGR S QN+P + Sbjct: 597 YVKGLLECIQPDSRIHTRY-LQTLTATGRLSSVDPNLQNIPTRT---------------- 639 Query: 351 ETIADPLGLASDCVRSCIIAS--NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + S +G D + +E RVLA ++G++ +AF +G DI Sbjct: 640 --------DEGKQIRKAFVPSTKDGYIF-SCDYSQVELRVLAHVSGDEHMQEAFKSGYDI 690 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T K F+ D+V+ R K + + Y G +K + + Sbjct: 691 HAHTAMKIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKQAKTFIDNYF 750 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + + D ++ + ++ A+ + G+A Sbjct: 751 EQYPQIKDYMDKAIKKARENGYAETIMHRRRYLPDIHSKNFNVRSFAERTAINSPIQGSA 810 Query: 503 CELVKKAWRAKHQGVLQLW 521 +++K A + + +L Sbjct: 811 ADIIKIAMINMQKKLDELH 829 Score = 45.1 bits (105), Expect = 0.036, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ M N K +VL VHDE++ + P ++ + +M Sbjct: 806 IQGSAADIIKIAMINMQKKLDELHLKTKMVLQVHDELIFDVPKDELDTIKKIVPEVMQSA 865 Query: 655 PSWAKGLPLKAE 666 +PL A+ Sbjct: 866 VK--LDVPLIAD 875 >gi|323128140|gb|ADX25437.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 880 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKAIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILTDGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|71902823|ref|YP_279626.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] gi|71801918|gb|AAX71271.1| DNA polymerase I [Streptococcus pyogenes MGAS6180] Length = 880 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|302561204|ref|ZP_07313546.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] gi|302478822|gb|EFL41915.1| DNA polymerase I [Streptomyces griseoflavus Tu4000] Length = 888 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 82/504 (16%), Positives = 155/504 (30%), Gaps = 72/504 (14%) Query: 54 PSDLLQY--------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 PS+L + L D V HN+ +F + + + LA Sbjct: 359 PSELDEADERALTAWLADPERPKVFHNAKGAMRVFAEHGW---TIEGVTMDTALAAYLVK 415 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 P AL+ ++ A + G+ D + L + R Sbjct: 416 PGRRSFDLDALSLEYLHRELAPAAAPDGQLAFGADDGAEAEALMVQARAILDLGEAFEGR 475 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E R D E L + G D + + ++++ A ++ ++ Sbjct: 476 LAEVGAADLLR-----DMELPTSALLARMERHGIAADREHLQAMEQMFAGAVQQAVKEAH 530 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L+ LF + ++ + D L + Sbjct: 531 AAAGHEF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLATQTDNELPVIMLR 589 Query: 286 GSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 KL L + +++DGR+ T A+ TGR S QN+P + Sbjct: 590 HREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------- 641 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + G + L+ AD + IE RV+A ++ + + Sbjct: 642 -----------------DEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDAGLTE 684 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +GED++ T A+ F+ V E R K M L Y G ++ A+ Sbjct: 685 AFTSGEDLHTTAAAQVFSVEQSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEAR 744 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 + + + + E+ + ++ A+ Sbjct: 745 ALMDAYFERFGGVRDYLRRVVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALN 804 Query: 496 DKLIGTACELVKKAWRAKHQGVLQ 519 + GTA ++VK A + + + Sbjct: 805 APIQGTAADIVKIAMLNVDRALRE 828 >gi|305681930|ref|ZP_07404734.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] gi|305658403|gb|EFM47906.1| DNA-directed DNA polymerase [Corynebacterium matruchotii ATCC 14266] Length = 885 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 65/398 (16%), Positives = 132/398 (33%), Gaps = 73/398 (18%) Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + G +D+ + + + + + + L++ LF Sbjct: 491 ILAEMEATGIAVDIPTLEEQLDTFTNLVTQEETAARTIAGDPNLLLTSPKQLQVVLFETL 550 Query: 250 GIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 G+ + TL + H + L ++ ++ L L +AV Sbjct: 551 GLPKTKKIKTGYSTAAKEIETLAANHPHEFLNHLLAHREYQKMKTT------LEGLIKAV 604 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 DGR+ T Q + TGR S QN+P + Sbjct: 605 GDDGRIHTTFQ-QTMTSTGRLSSTDPNLQNIPIRT------------------------P 639 Query: 360 ASDCVRSCI-IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 A +RS + +N + L+ AD + IE RV+A ++ + I A+ NGED++ AK F+ Sbjct: 640 AGKKIRSAFTVGTNYETLLTADYSQIEMRVMAHLSNDPGLITAYNNGEDLHNYVGAKVFD 699 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 P V+ E R K + L Y G ++ A ++ + + D Sbjct: 700 VPPSGVTPELRRKVKALSYGLVYGLSAFGLSQQLNIPAGEAKQIMENYFHRFGGVKHYLD 759 Query: 475 WEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 ++ + ++ A+ + GTA +++K A Sbjct: 760 TVVTQARKDGYTATLFDRRRYLPELTSTNRATRENAERAALNAPIQGTAADIIKIAMLRI 819 Query: 514 HQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545 H + ++ + + + G + +++ Sbjct: 820 HHELKKTNAKSRVLLQVHDELVVEIAPGELTTVKKLIE 857 Score = 46.7 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 8/119 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKL 597 A+++ K + V+ +R+ Y + + YL TS R + Sbjct: 739 EAKQIMENYFHRFGGVKHYLDTVVTQARKDGYTATLFDRRRYLPELTSTNRATRENAERA 798 Query: 598 TENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 N +Q + DI+ M T ++L VHDE+V E +V L Sbjct: 799 ALNAPIQGTAADIIKIAMLRIHHELKKTNAKSRVLLQVHDELVVEIAPGELTTVKKLIE 857 >gi|157964926|ref|YP_001499750.1| DNA polymerase I [Rickettsia massiliae MTU5] gi|157844702|gb|ABV85203.1| DNA polymerase I [Rickettsia massiliae MTU5] Length = 875 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 66/367 (17%), Positives = 126/367 (34%), Gaps = 54/367 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 SD + + + + G ++ + + +L E KL+E+I L+ + Sbjct: 473 YSDIDLPICFILDKMEKVGITVNANYLKQLSAEFGTEILKLEEEIFALSGTKF-NIGSPK 531 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLN 293 L LF + S + +L++ DL+L + + Sbjct: 532 QLGEILFEKMQLPFGKASAKASSYSTGAEILEKLSEHGYNIADLLLRWRQLTKLKNTYTD 591 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 +L + + + T ++ TGR S QN+P + Sbjct: 592 SLPKQIDNITHRVHTTFLQTSTTTGRLSSQEPNLQNIPTRS------------------- 632 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R IA G KL+ AD + IE R+L+ IA D +AF N +DI+ T Sbjct: 633 -----SEGNQIRQAFIAEEGYKLISADYSQIELRILSHIANIDALKQAFINKDDIHTQTA 687 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + FN +++ E R K + + Y G AK ++++ K Sbjct: 688 CQIFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVTNGEASEYIKKYFAEYKGV 747 Query: 470 STFEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + +A + H ++ A+ + GT +++K A Sbjct: 748 QEYMEQTKAFASSNGYVTNFFGRKCFVPLIHDKKLKQFAERAAINAPIQGTNADIIKIAM 807 Query: 511 RAKHQGV 517 Q + Sbjct: 808 INLDQEI 814 >gi|160914226|ref|ZP_02076447.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] gi|158433853|gb|EDP12142.1| hypothetical protein EUBDOL_00236 [Eubacterium dolichum DSM 3991] Length = 861 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 88/534 (16%), Positives = 175/534 (32%), Gaps = 83/534 (15%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 L +A + E + + LL+Y+ + + +++ ++ I Sbjct: 326 LYGFAIAHGNNCEYISLEDAKNDTALLEYIHTDN-GKIVYDAK---NVYHAWHRNHIAFV 381 Query: 92 RW-ICTSVLARTN-GLPSSLKNACLALNFSEHLTKM----EEGKALIARFCKGSIDSPPY 145 + A G+ S F L+K ++GK + + + Sbjct: 382 PVHRDVMLEAFLLDGMISDYDKLAEKYAFDCTLSKEDVFGKKGKPKLVVEEDAAAYAMQC 441 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDL 205 AN Q QLF E ++D +EL+ + E + + + G ++ Sbjct: 442 AENLANIEQ--QLFDELEQKD---MKELYDTI------EMPVVEVLYAMEKEGVHTSVET 490 Query: 206 VLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL 265 + ++ E ++ + L+ I + + L + L+ G+ T +L Sbjct: 491 LQEIAEATGKKIEALNAQIYEYAGMEF-NINSPKQLAVVLYDELGLPCGKK-RSTGADVL 548 Query: 266 SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 L+L + LS+ + DG++ ++TGR S Sbjct: 549 EKLKPVHPIISLLLEQRKYQKIYSTYAVGLSKHILKDGKIHTIFNQI-QTQTGRLSSSEP 607 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 QN+ +R +AS L+ AD + IE Sbjct: 608 NLQNIS------------------------VRDEEGKVIRKAFVASPQHTLMSADYSQIE 643 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ--- 442 R+LA +A E I+AF G DI+ T + F+ D V R K + + Y Sbjct: 644 LRMLAHMANEKTMIQAFNQGIDIHNQTAMQIFDVDHDHVDSNMRRSAKTVNFGIVYGQSD 703 Query: 443 -GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAES 480 G ++ + ++ + + TF D ++ Sbjct: 704 FGLSEQLGITMKEAKRFIDKYFASYPNIKTFMDDTIAFCEENGYVKTMFGRRRYIKEIND 763 Query: 481 HHLWMQDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + M++ A+ + G+A +L+K A + K + +LQ+ +L Sbjct: 764 KNYMMREFGKRAAMNAPIQGSAADLIKLAMVHIYQTMKEKKVKSRMILQIHDEL 817 >gi|313623618|gb|EFR93782.1| DNA polymerase I [Listeria innocua FSL J1-023] Length = 552 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 77/477 (16%), Positives = 154/477 (32%), Gaps = 62/477 (12%) Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 V +++ + + I K +LA PS + ++ Sbjct: 40 SEETKVVYDAKKTMVAMNR---IGFAIKGVTFDIMLASYLLNPSDSIDDFTSVAVRHD-- 94 Query: 124 KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG 183 E + A + KG+ S P + A H+ + ++ + E ++L + D Sbjct: 95 -YTEVETDEAIYGKGAKRSTPEEDIVAAHLARKAVAIAELEKRLVDDLEKNEQLALMEDL 153 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + +G +D + ++ +A K L+E I L + L + Sbjct: 154 ELPLTFVLAQMEMQGVSVDTQRLGNMKVELAGRLKTLEESIHSLAGEEF-NINSPKQLGV 212 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 LF + V ++ T +L + D IL + L + Sbjct: 213 ILFEKLELPPVKKTKTGYSTAADVLESLSGKHAIIDEILLYRQLGKIQSTYIEGLLKVTD 272 Query: 301 -SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ ++TGR S QN+P + Sbjct: 273 KETHKVHTRFN-QTLTQTGRLSSVDPNLQNIPIR------------------------LE 307 Query: 360 ASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + S G K+ AD + +E RVLA I+ ++ I AF + DI+ T F+ Sbjct: 308 EGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHTKTAMDVFH 367 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 D+V R K + + Y G ++ + ++ + + + Sbjct: 368 VEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFVSYPAVKEYMQ 427 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + S + ++ A+ + G+A +++KKA Sbjct: 428 DIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGSAADIIKKAM 484 Score = 44.7 bits (104), Expect = 0.057, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ + M + ++L VHDE++ E P+ + + Sbjct: 472 IQGSAADIIKKAMILMSERLKSENLEAKLLLQVHDELIFEAPEAEIAKLEEIV 524 >gi|21909681|ref|NP_663949.1| DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28895061|ref|NP_801411.1| DNA polymerase I [Streptococcus pyogenes SSI-1] gi|21903864|gb|AAM78752.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS315] gi|28810306|dbj|BAC63244.1| putative putative DNA-directed DNA polymerase I [Streptococcus pyogenes SSI-1] Length = 880 Score = 214 bits (544), Expect = 4e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|254775605|ref|ZP_05217121.1| DNA polymerase I [Mycobacterium avium subsp. avium ATCC 25291] Length = 913 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 93/529 (17%), Positives = 167/529 (31%), Gaps = 86/529 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D H + + G + LA P S LAL + Sbjct: 395 LADPGPPKALHEAK---LAMHDLAGRGWTLAGVTSDTALAAYLVRPGQRSFSLDDLALRY 451 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 E D + ++A + D E R L Sbjct: 452 LR-RELRAENPQQQQLSLLDDTDGTDDQAVQTLILRAVAVLDLADALDEELARINSTSL- 509 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 LS E + + + + G +DLDL+ +LQ A + + E + I + Sbjct: 510 -LSGMELPVQRVLAGMENAGIAVDLDLLSELQSDFAHQIRDAAEAAYAVIGKQI-NLGSP 567 Query: 239 YALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSA 288 L+ LF + ++ H + L RL + Sbjct: 568 KQLQAVLFDELQMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT--- 624 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L +V+SDGR+ T A+ TGR S QN+P + + Sbjct: 625 ---VDGLLNSVASDGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------ 668 Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 R + +G +L+ AD + IE R++A ++ + I+AF GED Sbjct: 669 ------------GRRTRDAFVVGDGYAELMTADYSQIEMRIMAHLSQDAGLIEAFNTGED 716 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 ++ ++AF PI++V+ E R K M L Y G ++ K + + Sbjct: 717 LHSFVASRAFGVPIEEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEAKEQMDAYF 776 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + ++ + +++ A+ + G+A Sbjct: 777 ARFGGVRDYLHAVVEQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSA 836 Query: 503 CELVKKAWRAKHQGV----------LQLWKDLTEGFACVVQEGGSISAR 541 +++K A + + LQ+ +L A +E AR Sbjct: 837 ADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALAR 885 Score = 40.5 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K G I+L VHDE++ E + L Sbjct: 832 IQGSAADIIKVAMIEVDKAIKEAGLQSRILLQVHDELLFEVAAGEREQLEALAR 885 >gi|94989670|ref|YP_597770.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] gi|94543178|gb|ABF33226.1| DNA polymerase I [Streptococcus pyogenes MGAS10270] Length = 880 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|324103783|gb|ADY17822.1| DNA polymerase [Arsenophonus nasoniae] gi|324103785|gb|ADY17823.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 102/234 (43%), Positives = 142/234 (60%), Gaps = 8/234 (3%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 DM TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GA Sbjct: 1 DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGA 60 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIAS 371 SRTGRW+G +FQP NLPR ++ + + ++AL G D + L S +R CIIA Sbjct: 61 SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSK 426 GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y YA+AF + V+K Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFYLLPENVTK 180 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 QR IGKVMEL LGY GG F T A GLDL + ++ +A S Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPHNVKREAIS 234 >gi|139473034|ref|YP_001127749.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] gi|134271280|emb|CAM29496.1| DNA polymerase I [Streptococcus pyogenes str. Manfredo] Length = 880 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|50913551|ref|YP_059523.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] gi|50902625|gb|AAT86340.1| DNA polymerase I [Streptococcus pyogenes MGAS10394] Length = 880 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 127/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILAYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKTYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPRIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|306828146|ref|ZP_07461409.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] gi|304429683|gb|EFM32729.1| DNA-directed DNA polymerase I [Streptococcus pyogenes ATCC 10782] Length = 880 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|229552558|ref|ZP_04441283.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|229314110|gb|EEN80083.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] Length = 881 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 94/596 (15%), Positives = 192/596 (32%), Gaps = 87/596 (14%) Query: 28 AVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF------ 80 I + A + E V + T++ S + L V +S + +F Sbjct: 324 FEIEMLADNYHTAEQVGFFIGTKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNI 383 Query: 81 --KKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIAR 134 LG+ +P +LA P L ++ L + E+ Sbjct: 384 VAAHRLGLHLP--DIAFDVLLASYLINPDENSNDLGKIAEDHDY-HDLPRDEDV------ 434 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + KG+ P D + D+ ++ +D E L + + Sbjct: 435 YGKGAKRQVPEDKLLFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEM 494 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 +G ++ + + +Q K L+E I G+ + L LF + ++ Sbjct: 495 EIQGITLNAQTLKDMGTEFSQSIKVLEEKIYG-EAGVKFNLNSPKQLGEVLFEKLNLPVI 553 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 ++ + + + +L + + KLN+ L +A D ++ Sbjct: 554 KKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPDHKIHTRY 611 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P ++ +R + Sbjct: 612 -LQTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFV 645 Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 S ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + Sbjct: 646 PSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPD 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------- 474 R K + Y G A+ + + + + + Sbjct: 706 MRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKVHDYMENMVKKARED 765 Query: 475 ------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----RAKHQGVL 518 Q S + ++ A+ + G+A +++K A +A + L Sbjct: 766 GYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAHL 825 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 Q L + + + A+ VP+++ V + + S + D K Sbjct: 826 QAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLAVPLKVESHYGPTWFDAK 881 Score = 41.3 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + DI+ M K ++L VHDE++ E P +G L +M Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIM 857 >gi|256027960|ref|ZP_05441794.1| DNA polymerase I [Fusobacterium sp. D11] gi|289765905|ref|ZP_06525283.1| DNA polymerase I [Fusobacterium sp. D11] gi|289717460|gb|EFD81472.1| DNA polymerase I [Fusobacterium sp. D11] Length = 912 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 147/399 (36%), Gaps = 64/399 (16%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ + E L + + +G ID+ + +E ++++ I + Sbjct: 505 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P + Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 669 -------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + ++FE +S + ++ Q AV + GT Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835 Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEG 535 A E++KK K + + L + + V+E Sbjct: 836 AAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEEN 874 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQV 863 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E + + +M Sbjct: 864 HDELIFEVEENSVEKYSEILADIM 887 >gi|294628777|ref|ZP_06707337.1| DNA polymerase I [Streptomyces sp. e14] gi|292832110|gb|EFF90459.1| DNA polymerase I [Streptomyces sp. e14] Length = 889 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 82/539 (15%), Positives = 161/539 (29%), Gaps = 76/539 (14%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L D V H++ + + + LA P A AL+ Sbjct: 375 LADADRPKVFHDAKGAMRVLAEHGW---SVDGVRMDTALAAYLVKPGRRSFALDALSLEY 431 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL 180 ++ A + G+ ++ + L + R E R Sbjct: 432 LHRELAPAAAADGQLAFGADEAAEAEMLMIQARSILDLGEVFEGRLEEVGAADLLR---- 487 Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 D E L + G D + ++++ A ++ ++ + Sbjct: 488 -DMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAHAAAGHEF-NLGSPKQ 545 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLS 296 L+ LF + ++ + D L + KL L Sbjct: 546 LQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTDNELPVIMLRHREQAKLRVTVEGLI 605 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + +++DGR+ T A+ TGR S QN+P + Sbjct: 606 KTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT---------------------- 642 Query: 357 LGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + G + L+ AD + IE RV+A ++ + I+AF +GED++ T ++ Sbjct: 643 --DEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTAASQ 700 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 F V E R K M L Y G ++ A+ + + + Sbjct: 701 VFGVDRSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAAEARALMDAYFERFGGVRD 760 Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + E+ + ++ A+ + GTA ++VK A Sbjct: 761 YLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIAM 820 Query: 511 RAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + ++ + + + G + + V R V + P Sbjct: 821 LNVDRALREADLKSRMLLQVHDEIVLEIAPGERAATEEI------VRREMSGAVQLRAP 873 >gi|297198968|ref|ZP_06916365.1| DNA polymerase I [Streptomyces sviceus ATCC 29083] gi|297147249|gb|EDY55141.2| DNA polymerase I [Streptomyces sviceus ATCC 29083] Length = 694 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 86/526 (16%), Positives = 158/526 (30%), Gaps = 78/526 (14%) Query: 54 PSDLLQY--------LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 PS+L + L D V HN+ +F + D + LA Sbjct: 165 PSELDEADERAWVAWLADAERPKVLHNAKGAMRVFAEH---DWSVAGVSMDTALAAYLVK 221 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 P AL+ ++ A + G+ D + L + R Sbjct: 222 PGRRSFDLDALSLEYLGRELAPPAAADGQLAFGADDGAEAEALMVQARAVLDLGSAFEGR 281 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E R D E L + G D + ++++ A ++ ++ Sbjct: 282 LAEVGAADLLR-----DMELPTSALLARMERHGIAADRAHLEAMEQMFAGAVQQAVKEAH 336 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 + L+ LF G+ ++ + D L + Sbjct: 337 GAAGHEF-NLGSPKQLQEVLFGELGLPKTKKTKTGYTTDADALAWLATQTDNELPVIMLR 395 Query: 286 GSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 KL L + +++DGR+ T A+ TGR S QN+P + Sbjct: 396 HREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------- 447 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIK 400 +R + G + L+ AD + IE RV+A ++ + I+ Sbjct: 448 -----------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDAGLIE 490 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +GED++ T ++ F V E R K M L Y G ++ A Sbjct: 491 AFTSGEDLHTTAASQVFAVEPGAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEAR 550 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 + + + + E+ + ++ A+ Sbjct: 551 ALMDAYFERFGGVRDYLRRAVDEARATGYTATLFGRRRYLPDLNSDNRQRREAAERMALN 610 Query: 496 DKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535 + GTA ++VK A + ++ + + V G Sbjct: 611 APIQGTAADIVKIAMLKVDGALRDAGLASRMLLQVHDEIVLEVAPG 656 >gi|315924217|ref|ZP_07920443.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] gi|315622619|gb|EFV02574.1| DNA-directed DNA polymerase I [Pseudoramibacter alactolyticus ATCC 23263] Length = 887 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 66/395 (16%), Positives = 134/395 (33%), Gaps = 67/395 (16%) Query: 158 LFGEYCKRDVEATR-ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 L E + E L++++ E L + ++ G++ID + + L Sbjct: 468 LHAELAHQLEEMEMTALYQKI------ELPLIPVLASMESIGFKIDQEQLKNLSAHFEAR 521 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + L I + + T L M LF G+ + ++ + + + QL Sbjct: 522 IETLTRQIYEEAGQRF-NINSTKQLGMILFEEMGLPPIKKTKTGYSTSVE--VLEQLRPY 578 Query: 277 LILNRLASSGSAILKLNT-----LSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNL 330 + + KL++ L + V + ++ + TGR S QN+ Sbjct: 579 NTIVDDILEYRTVTKLDSTYGRGLIKLVDPETEKIYSHFN-QTVTATGRISSSDPNLQNI 637 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389 P + +R + S LV AD + IE RVL Sbjct: 638 PVRT------------------------DLGREIRRVFVPSSPMCVLVDADYSQIELRVL 673 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA---- 445 A + ++ ++AFA +DI+ T ++ F P++ V++EQR+ K + L Y A Sbjct: 674 AHLTQDENLLEAFAKNQDIHARTASEIFQVPLEDVTREQRSHAKAINFGLIYGKQAFSLG 733 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLW 484 K + + + + + +S + Sbjct: 734 KELGIGRNQAQDYIDMYFSRYPKVYAYMKAIREEAKTKGYVTTLYGRRRYIPEIQSRNRM 793 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + A+ + G+A +++K A + + + Sbjct: 794 IVQSGERMALNTPIQGSAADIMKIAMVKVYHRLAK 828 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Query: 594 GGKLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGT 646 G ++ N +Q + DI+ M K + ++L +HDE++ E P+T Sbjct: 798 GERMALNTPIQGSAADIMKIAMVKVYHRLAKESFRSHLLLQIHDELIIEAPETES---EK 854 Query: 647 LCSLMTK 653 + L+T+ Sbjct: 855 ILRLLTE 861 >gi|58337813|ref|YP_194398.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227904462|ref|ZP_04022267.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] gi|58255130|gb|AAV43367.1| DNA polymerase I [Lactobacillus acidophilus NCFM] gi|227867837|gb|EEJ75258.1| DNA polymerase I [Lactobacillus acidophilus ATCC 4796] Length = 886 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 78/555 (14%), Positives = 178/555 (32%), Gaps = 92/555 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNA 112 L L + + + + + +D+ + +LA +S Sbjct: 365 KPLKDILENRKIQKDVFDLKRMTVGLHR---LDVIVEGLNYDMLLASYLVNNEKNSNDLG 421 Query: 113 CLALNFSEHLTK-----MEEGKALIARFCKGSIDSPPYDC--TRANHVQAWQLFGEYCKR 165 +A + E+ K +GK K + + E+ + Sbjct: 422 EIAHLYDEYSIKTDLEVYGKGKKQAIPEDKEFFKHLAAKVCVIEKLKPELLKQLKEHEQD 481 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D+ T E+ + + G +++ +++LQ A + K+L++ I Sbjct: 482 DLFETIEI------------PTARVLAKMEINGIKVEASTLIELQNEFAVKLKELEDKIY 529 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNR 281 K + L LF + ++ ++ +++ + + + +++ R Sbjct: 530 KQAGEEF-NLNSPKQLGHILFEKLNLPVLKKTKTGYSTSVEVLDQLKTQSPIVSEILDYR 588 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + + L + + DGR+ + TGR S QN+P + Sbjct: 589 QIAKIQST-YVKGLLDVIQRDGRVHTRY-LQTLTATGRLSSVDPNLQNIPTRT------- 639 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA--SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R + +G D + +E RVLA ++G+ Sbjct: 640 -----------------EEGKQIRKAFVPSEPDGYIF-SCDYSQVELRVLAHVSGDQNMQ 681 Query: 400 KAFANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AF G DI+ T + F+ D+V+ R K + + Y G +K Sbjct: 682 EAFKTGYDIHAHTAMRIFHLDSPDEVTPLMRRHAKAVNFGIVYGISDYGLSKNLGISRKR 741 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQYPEFA 493 + + + + D E+ ++ A Sbjct: 742 AKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKFTVRSFAERTA 801 Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR 553 + + G+A +++K A + + +L V+Q + + +VP+ + Sbjct: 802 INSPIQGSAADIIKIAMI----NMQKKLDELHLKTKMVIQ----VHDELIFDVPKDELET 853 Query: 554 HKRDVHIVLPSSRRL 568 K+ V ++ S+ +L Sbjct: 854 IKKIVPEIMQSAVKL 868 Score = 47.0 bits (110), Expect = 0.009, Method: Composition-based stats. Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 15/149 (10%) Query: 538 ISARRVANVPRLVMRRH---KRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTY 593 IS +R ++ K + + +R Y++ YL ++ R++ Sbjct: 737 ISRKRAKEFIDNYFEQYPQIKDYMDKAVQEAREKGYAETIMHRRRYLPDIHAKKFTVRSF 796 Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 + N +Q + DI+ M N K +V+ VHDE++ + P ++ Sbjct: 797 AERTAINSPIQGSAADIIKIAMINMQKKLDELHLKTKMVIQVHDELIFDVPKDELETIKK 856 Query: 647 LC-SLMTKNPSWAKGLPLKAE-GYEAKRY 673 + +M +PL A+ G+ Y Sbjct: 857 IVPEIMQSAVK--LDVPLIADSGWGHNWY 883 >gi|71909973|ref|YP_281523.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94987792|ref|YP_595893.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] gi|71852755|gb|AAZ50778.1| DNA polymerase I [Streptococcus pyogenes MGAS5005] gi|94541300|gb|ABF31349.1| DNA polymerase I [Streptococcus pyogenes MGAS9429] Length = 880 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQSKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|242308893|ref|ZP_04808048.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] gi|239524557|gb|EEQ64423.1| DNA polymerase I [Helicobacter pullorum MIT 98-5489] Length = 895 Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 102/602 (16%), Positives = 190/602 (31%), Gaps = 123/602 (20%) Query: 5 FIDIETRS----PQPLPK-----VGVWAYAEQAVITLCAYAWDDEPVKL-WDRTEQSAMP 54 D ET S + GV +Y A+ + ++ ++ + Sbjct: 333 SFDTETTSLEVRSAKIVGFSFSVNGVDSY-----YVPIAHNYLGVEEQVSYECAK----- 382 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPSSLKNAC 113 + ++Y+ + + HN ++ + K + + + +LA Sbjct: 383 -EFIEYIFGCKYV-IGHNLKYDLEILKTNFDFVLQDFSKIRDSMLLAWLL--------QS 432 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW-QLFGEYCKRDVEATRE 172 AL + L K F I + N Q Q EY D A + Sbjct: 433 DALCNLDFLMK--------KYFNHEMIHYKDIVHKKENFSQILIQYACEYASEDAAACYQ 484 Query: 173 LFKRLIPLSD---------GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L+ +L L D E + G +IDL+ +L + ++ E+ Sbjct: 485 LYFKLKGLVDERLMEIAKSVEFPFIQSLMNMELIGIKIDLEFFQELILESRERLHQISEE 544 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS--------HSNITQLAK 275 I L + + L LF + ++ + S H I ++ + Sbjct: 545 IFALANKRF-NLNSPQQLATILFEELNLQAGKKTKSGFSTSESVLNSLYDTHPIIPKILE 603 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQ 333 +L S+ + LSE +D R+ + G + TGR S QN+P Sbjct: 604 YREFFKLYSTY-----IEPLSEHAKADLQHRIYTSFMQTG-TSTGRLSSKNPNLQNIP-- 655 Query: 334 ERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIA 393 +R IA LV D + IE R+LA + Sbjct: 656 ----------------------VKTAQGRRIRRGFIAKENHLLVSLDYSQIELRLLAHFS 693 Query: 394 GEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFK 449 ++ I+AF DI++ T K F + +++E+RAI K + L Y G K K Sbjct: 694 EDEAMIEAFLKDADIHLETAKKIFG---EDMAQEKRAIAKSINFGLIYGMGPKKLSETLK 750 Query: 450 TMASHCGLDLQQFSQNVKSTSTF--------------------EDWEQAESHHLWMQDQY 489 +Q + + + F E + + + Sbjct: 751 ITFQEAKTYIQNYFTSFPTVKEFLKNQEEFILENGYSKTLLGRMRKFDFEGVQEYQKAAF 810 Query: 490 PEFAVKDKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + G+A +++K A A + + +LQ+ +L + + S ++ Sbjct: 811 LREGINAIFQGSAADIIKMAMNAITKANLESKLLLQVHDELIFEAPKEIAKKESEEIAKI 870 Query: 544 AN 545 Sbjct: 871 ME 872 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Query: 601 IVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651 I Q + DI+ M TK ++L VHDE++ E P + +M Sbjct: 818 IFQGSAADIIKMAMNAITKANLESKLLLQVHDELIFEAPKEIAKKESEEIAKIM 871 >gi|209558735|ref|YP_002285207.1| DNA polymerase I [Streptococcus pyogenes NZ131] gi|209539936|gb|ACI60512.1| DNA polymerase I [Streptococcus pyogenes NZ131] Length = 880 Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 57/375 (15%), Positives = 117/375 (31%), Gaps = 58/375 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG 516 A +++K A + Sbjct: 804 AADILKIAMINLDKA 818 >gi|84496608|ref|ZP_00995462.1| putative DNA polymerase I [Janibacter sp. HTCC2649] gi|84383376|gb|EAP99257.1| putative DNA polymerase I [Janibacter sp. HTCC2649] Length = 889 Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 66/398 (16%), Positives = 133/398 (33%), Gaps = 73/398 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E L + + G +D D + L+ + ++ D + G + Sbjct: 485 LRDIELPLVDILGAMERTGIAVDTDALSALEADFDAKVREAQLDAYEAIGGDEINLGSPK 544 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L+ LF G+ ++ + H + + + RL + Sbjct: 545 QLQTVLFETLGLPKTRRTKTGYTTDADALTDLYAKTQHPFLEAMLRHRDAMRLRVT---- 600 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++V+ D R+ T A+ TGR S QN+P + + Sbjct: 601 --VEGLIKSVAEDQRIHTTYIQTIAA-TGRLSSTDPNLQNVPIRTEA------------- 644 Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G + L+ AD + IE R++A ++G++ I+AF GED+ Sbjct: 645 -----------GRRIREVFVVGKGYESLMSADYSQIEMRIMAHLSGDEGLIEAFRTGEDL 693 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + A+ F + V+ E R+ K M L Y G +K + ++ Sbjct: 694 HRFVGARVFGVEPEDVTAEMRSKVKAMSYGLAYGLSAFGLSKQLTISTGEAQGLMDEYFA 753 Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503 + E+ + ++ A+ + G+A Sbjct: 754 RFGGVRDYLREVVGEARATGYTATMLGRRRYLPDLTSDNRQRREGAERMALNAPIQGSAA 813 Query: 504 ELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535 +++K A + + ++ + + V EG Sbjct: 814 DIIKLAMKGVDSALRESGAKSRMLLQVHDELVLEVAEG 851 Score = 44.7 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 52/284 (18%), Positives = 95/284 (33%), Gaps = 39/284 (13%) Query: 396 DWKIKAFANGEDIYVT----TYAK---------AFNTPIDKVSKEQRAIGKVMELALGYQ 442 + IK+ A + I+ T A N PI ++ R I +V + GY+ Sbjct: 602 EGLIKSVAEDQRIHTTYIQTIAATGRLSSTDPNLQNVPIR--TEAGRRIREVFVVGKGYE 659 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + ++++ + E + E H + V ++ G Sbjct: 660 SLMSADYS-----QIEMRIMAHLSGDEGLIEAFRTGEDLHRF---------VGARVFGVE 705 Query: 503 CELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIV 561 E V R+K + + F Q S A+ + + + + V Sbjct: 706 PEDVTAEMRSKVKAMSYGLAYGLSAFGLSKQLTISTGEAQGLMDEYFARFGGVRDYLREV 765 Query: 562 LPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATK 619 + +R Y + + G YL TS + R ++ N +Q + DI+ MK Sbjct: 766 VGEARATGYTATMLGRRRYLPDLTSDNRQRREGAERMALNAPIQGSAADIIKLAMKGVDS 825 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 ++L VHDE+V E + V L + M + Sbjct: 826 ALRESGAKSRMLLQVHDELVLEVAEGERDDVEALVRAEMGRAVE 869 >gi|111115375|ref|YP_709993.1| DNA polymerase I [Borrelia afzelii PKo] gi|110890649|gb|ABH01817.1| DNA polymerase I [Borrelia afzelii PKo] Length = 889 Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 94/620 (15%), Positives = 199/620 (32%), Gaps = 117/620 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 322 KYISIDTET-SSLDIYTA-----------RLIGISISFKE------FEGYYIPIEAKGKI 363 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 364 YIEKHYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 421 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 + LA + H K E+ F S++ Y A+ + + +F + K Sbjct: 422 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNIFTKKLK 481 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D L K + + E + + + G +D + + + + + QE + ++ +I Sbjct: 482 ED-----GLDKL---MHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEI 533 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277 +K + GI + + LF + L + + I H +I + K Sbjct: 534 IK-SIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHR 592 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + +L S+ + + L E ++ RL + + TGR + QN+P Sbjct: 593 QIAKLKSTYT-----DNLIELINHKTNRLHTSF-IQTKTATGRITSINPNLQNIP----- 641 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R NG + AD + IE +LA ++ ++ Sbjct: 642 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 682 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 IKAF N +DI+ T +K F +++ + R I K + + Y+ AK Sbjct: 683 ALIKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDFRLAKELGITK 742 Query: 453 SHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPE 491 + + + F ++ S++ + Sbjct: 743 EEAKGFINSYFDSYPKIKEFITNQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAER 802 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A+ + G+A +++K A ++++ + + + + + P Sbjct: 803 IAINSIIQGSAADIMKIAM-------VRVFNEF-KSKKMESKILLQVHDEMLIESPIKEK 854 Query: 552 RRHKRDVHIVLPSSRRLVYS 571 ++ + I++ ++ L Sbjct: 855 NEVEKILKIMMETAYTLNLP 874 Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 +I+Q + DI+ M K I+L VHDE++ E+P V + +M Sbjct: 805 INSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLIESPIKEKNEVEKILKIM 864 Query: 652 TKNPSWAKGLPLKA 665 + ++ LPL+A Sbjct: 865 MET-AYTLNLPLRA 877 >gi|237744288|ref|ZP_04574769.1| DNA polymerase I [Fusobacterium sp. 7_1] gi|229431517|gb|EEO41729.1| DNA polymerase I [Fusobacterium sp. 7_1] Length = 912 Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 74/407 (18%), Positives = 149/407 (36%), Gaps = 64/407 (15%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ + E L + + +G ID+ + +E ++++ I + Sbjct: 505 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P + Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 669 -------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + ++FE +S + ++ Q AV + GT Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835 Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 A E++KK K + + L + + V+E R+ Sbjct: 836 AAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEESSVEKYSRI 882 Score = 43.2 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQV 863 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E ++ + +M Sbjct: 864 HDELIFEVEESSVEKYSRILADIM 887 >gi|78777442|ref|YP_393757.1| DNA polymerase I [Sulfurimonas denitrificans DSM 1251] gi|78497982|gb|ABB44522.1| DNA polymerase A [Sulfurimonas denitrificans DSM 1251] Length = 902 Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 83/548 (15%), Positives = 170/548 (31%), Gaps = 108/548 (19%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTE-----QSAMPSD----LLQYLRDETVMCVAHNSLFE 76 E + ++ ++++ + + ++ + + V V HN F+ Sbjct: 346 ENDSLVGFSFCFNEDEAYYVPIAHFYLGVGEQISQEDAKIAIKKIFNSRV--VGHNIKFD 403 Query: 77 RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFC 136 + LG + + + +LA S+L L+ EH Sbjct: 404 LHFVIRFLG-EGELDIFADSMILAWLINPESALSLDKLSEKLLEHKMITF---------- 452 Query: 137 KGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------------DG 183 K S+ + A + Y D T L+ + + + Sbjct: 453 KESVKKGETFASVAL-----EEACNYAAEDAYITLRLYYLFLEMLKDQGAEHLIEEAKEV 507 Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E + G ++ + + +L + I +L + T L Sbjct: 508 EFPFIKTLLKMEMHGIELNSLFLEQFLAEAKDSLSELTKKIYELASLEF-NINSTQQLGN 566 Query: 244 YLFLITGIDLVDMSEGTLKS--------ILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 LF G+ ++ + + H I L + + +L S+ + L Sbjct: 567 VLFEQLGLPTSKKTKTGYSTDEKVLNSLLGEHEIIPYLLEYREVYKLYSTY-----IEPL 621 Query: 296 SEAVSSDG--RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + D R+ + G + TGR S QN+P + Sbjct: 622 LKLSQQDKESRIHTSFVQTGTT-TGRLSSKNPNLQNIPTRT------------------- 661 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R +A GKKL+ D + IE R+LA + ++AF +DI++ T Sbjct: 662 -----ALGTKIREAFVAPEGKKLIGIDYSQIELRLLAHFTQDRVLVEAFMQDKDIHMQTA 716 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKST 469 F ++ + +R + K + L Y G K K + ++++ + S Sbjct: 717 IALFG---EEDAPLKRNVAKTVNFGLLYGMGQKKLSETLKITTAEAKEIIERYFSSFPSV 773 Query: 470 STF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 ++ + ES + Y AV G+A +++K + Sbjct: 774 KSYFRSIVDFSKEAGYVETLLKRRRYFDYESASPMFRAAYEREAVNSIFQGSASDIIKLS 833 Query: 510 WRAKHQGV 517 H+ + Sbjct: 834 MNKIHKLI 841 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 13/151 (8%) Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 K L+E E I R ++ P V + V + + Y + Sbjct: 746 KKLSETLKITTAEAKEIIERYFSSFP-SVKSYFRSIVDFSKEAGYVETLLKRR---RYFD 801 Query: 582 TATSQLMRERTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSE 635 ++ M Y + +I Q + DI+ M K ++L +HDE++ E Sbjct: 802 YESASPMFRAAYEREAVNSIFQGSASDIIKLSMNKIHKLIEDEKLNAKMLLQIHDELIFE 861 Query: 636 TPDTPYFSV-GTLCSLMTKNPSWAKGLPLKA 665 + + ++M +PLKA Sbjct: 862 VDTSEAEILGEKFKNIMQNIMP--LNIPLKA 890 >gi|216263573|ref|ZP_03435568.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] gi|215980417|gb|EEC21238.1| DNA polymerase I superfamily protein [Borrelia afzelii ACA-1] Length = 908 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 94/620 (15%), Positives = 199/620 (32%), Gaps = 117/620 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTET-SSLDIYTA-----------RLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKHYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 + LA + H K E+ F S++ Y A+ + + +F + K Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNIFTKKLK 500 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D L K + + E + + + G +D + + + + + QE + ++ +I Sbjct: 501 ED-----GLDKL---MHEVEMPFNNVIIEMEENGIYLDREYLKEYGKELGQELELIENEI 552 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277 +K + GI + + LF + L + + I H +I + K Sbjct: 553 IK-SIGINFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLIGQHESIENIIKHR 611 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + +L S+ + + L E ++ RL + + TGR + QN+P Sbjct: 612 QIAKLKSTYT-----DNLIELINHKTNRLHTSF-IQTKTATGRITSINPNLQNIP----- 660 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R NG + AD + IE +LA ++ ++ Sbjct: 661 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 701 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 IKAF N +DI+ T +K F +++ + R I K + + Y+ AK Sbjct: 702 ALIKAFENNKDIHTETASKLFKIEEKEITPDLRRIAKSINFGIIYRMSDFRLAKELGITK 761 Query: 453 SHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPE 491 + + + F ++ S++ + Sbjct: 762 EEAKGFINSYFDSYPKIKEFITNQINFVRNTGYSETILKRRRYIKEINSNNYLERSAAER 821 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A+ + G+A +++K A ++++ + + + + + P Sbjct: 822 IAINSIIQGSAADIMKIAM-------VRVFNEF-KSKKMESKILLQVHDEMLIESPIKEK 873 Query: 552 RRHKRDVHIVLPSSRRLVYS 571 ++ + I++ ++ L Sbjct: 874 NEVEKILKIMMETAYTLNLP 893 Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 7/74 (9%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 +I+Q + DI+ M K I+L VHDE++ E+P V + +M Sbjct: 824 INSIIQGSAADIMKIAMVRVFNEFKSKKMESKILLQVHDEMLIESPIKEKNEVEKILKIM 883 Query: 652 TKNPSWAKGLPLKA 665 + ++ LPL+A Sbjct: 884 MET-AYTLNLPLRA 896 >gi|296327892|ref|ZP_06870428.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155026|gb|EFG95807.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 911 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 77/439 (17%), Positives = 162/439 (36%), Gaps = 68/439 (15%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ + E L + + +G ID+ + +E K+++ I + Sbjct: 504 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEE 560 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 561 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 619 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ + G + TGR S QN+P + Sbjct: 620 KTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD----------- 667 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R IA GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 668 -------------GIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 714 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN P + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 715 LHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 774 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + +TFE +S + ++ Q AV + GT Sbjct: 775 FEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 834 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A E++KK V + KD + + + + V + + ++ + + Sbjct: 835 AAEVLKKVMVK----VYDILKDKED-----IALLLQVHDELIFEVEKNSVEKYSGILADI 885 Query: 562 LPSSRRLVYSDVKGDCSYL 580 + ++ +L + + + Sbjct: 886 MKNTVQLEDVKLNININIG 904 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 803 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQV 862 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E + +M Sbjct: 863 HDELIFEVEKNSVEKYSGILADIM 886 >gi|256371863|ref|YP_003109687.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] gi|256008447|gb|ACU54014.1| DNA polymerase I [Acidimicrobium ferrooxidans DSM 10331] Length = 886 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 136/385 (35%), Gaps = 72/385 (18%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 +D E L + + G ID D++ + +A ER + ++ G + + Sbjct: 486 TDVEIPLTRVLTDMEIHGVAIDRDVLAAIGTELATERDRALAEVRHYAGGEL-NPNSPRQ 544 Query: 241 LRMYLFLITGIDLVDMSE---GTLKSILS-----HSNITQLAKDLILNRLASSGSAILKL 292 L + LF G+ ++ T +L H + + + L++L S+ Sbjct: 545 LAVVLFERLGLPAGRKTKTGYSTDARVLESLRDAHPIVAAILRFRELDKLLSTF-----Y 599 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +DGR+ T +RTGR S QN+P + Sbjct: 600 EGLRSEIGADGRIHATFN-QAVARTGRISSERPNLQNIPVRT------------------ 640 Query: 353 IADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 R +A+ G LV AD + IE RVLA ++G++ ++ + D++ Sbjct: 641 ------DEGKRFRDAFVATEGHVLVAADYSQIELRVLAHLSGDEELVRILSGDGDVHTLV 694 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 A+ F P ++V+ +QR++ K++ L Y G A+ + L F Sbjct: 695 AARVFGVPAERVTPQQRSVAKMVTYGLSYGMEAYGLAQRLGVPPAEAEGILADFFAAFPG 754 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 + D +S + ++ A+ G A ++ K Sbjct: 755 LRHYRDASVDAARAQGFTTTLLGRRRYLPDLDSPNRTVRQGAERQAMNAGTQGLAADIFK 814 Query: 508 KAWRAKHQG--------VLQLWKDL 524 A H VLQ+ ++ Sbjct: 815 IALVRLHAALSPTDGALVLQVHDEV 839 >gi|94993561|ref|YP_601659.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] gi|94547069|gb|ABF37115.1| DNA polymerase I [Streptococcus pyogenes MGAS10750] Length = 880 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 125/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRTTLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G+ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDKHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|19704040|ref|NP_603602.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714234|gb|AAL94901.1| DNA polymerase I [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 911 Score = 213 bits (542), Expect = 8e-53, Method: Composition-based stats. Identities = 77/439 (17%), Positives = 162/439 (36%), Gaps = 68/439 (15%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ + E L + + +G ID+ + +E K+++ I + Sbjct: 504 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELEKELLKVEKAIYEEAGEE 560 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 561 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 619 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ + G + TGR S QN+P + Sbjct: 620 KTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSEPNLQNIPVKTDD----------- 667 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R IA GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 668 -------------GIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 714 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN P + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 715 LHDLTARRIFNLPDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 774 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + +TFE +S + ++ Q AV + GT Sbjct: 775 FEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 834 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 A E++KK V + KD + + + + V + + ++ + + Sbjct: 835 AAEVLKKVMVK----VYDILKDKED-----IALLLQVHDELIFEVEKNSVEKYSGILADI 885 Query: 562 LPSSRRLVYSDVKGDCSYL 580 + ++ +L + + + Sbjct: 886 MKNTVQLEDVKLNININIG 904 Score = 42.0 bits (97), Expect = 0.29, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 34/84 (40%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 803 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDILKDKEDIALLLQV 862 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E + +M Sbjct: 863 HDELIFEVEKNSVEKYSGILADIM 886 >gi|260494128|ref|ZP_05814259.1| DNA polymerase I [Fusobacterium sp. 3_1_33] gi|260198274|gb|EEW95790.1| DNA polymerase I [Fusobacterium sp. 3_1_33] Length = 912 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 147/399 (36%), Gaps = 64/399 (16%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ + E L + + +G ID+ + +E ++++ I + Sbjct: 505 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLRIEKAIYEEAGEE 561 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 562 F-NINSPKQLGDVLFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P + Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 669 -------------GIKIREGFVAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYKEEKD 715 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + ++FE +S + ++ Q AV + GT Sbjct: 776 FEQYPRVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835 Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEG 535 A E++KK K + + L + + V+E Sbjct: 836 AAEVLKKVMVKVYDVLKDKEDIALLLQVHDELIFEVEEN 874 Score = 45.5 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQV 863 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E + + +M Sbjct: 864 HDELIFEVEENSVEKYSEILADIM 887 >gi|301165634|emb|CBW25205.1| DNA polymerase I [Bacteriovorax marinus SJ] Length = 883 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 135/402 (33%), Gaps = 69/402 (17%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D + L + + G I+ + ++ + + +L + K + + + + Sbjct: 482 DIDNKLTPVLAAMEYEGVHINKAFFSEYEKELQTKLDELQASVDKFSKEPV-NLNSPKQV 540 Query: 242 RMYLFLITGIDLVDMSE------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 + LF + + ++ ++ L+ ++++ ++ R + + + Sbjct: 541 GVLLFEELELPVGKKTKTGYSTDSSVLEDLAAKGLSEVPALILEYREVGKILST-YVKAI 599 Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 E ++ G++ A+ TGR S QN+P + Sbjct: 600 PELLNEASGKIHTHFNQNVAA-TGRLSSNHPNLQNIPIRS-------------------- 638 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 VR IA GK L+ AD + +E R+LA + + I AF G DI+ T + Sbjct: 639 ----ELGRRVRKGFIAGPGKILLAADYSQVELRLLAHFSNDKTMIDAFKKGVDIHRRTAS 694 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + P+++V R+ K + L Y G A K + + + S Sbjct: 695 EIMGVPVEEVGSNDRSKAKAVNFGLMYGQSSFGLAAALKIPRKEAKEYITNYFERFSSVK 754 Query: 471 TFEDWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + D + E S + ++ A+ + GTA +++K A Sbjct: 755 GYLDHLKEECEKTGYAITLKGRKRYLADIHSTNRTIKANAERVAINSPIQGTAADIIKLA 814 Query: 510 WRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 K + +LQ+ +L E + Sbjct: 815 MINIQKVLDDKKLKSKMILQVHDELIFEVVESELEEMKTILK 856 Score = 38.9 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 10/85 (11%) Query: 574 KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------GYDIVL 626 KG YL S + ++ N +Q + DI+ M N K ++L Sbjct: 774 KGRKRYLADIHSTNRTIKANAERVAINSPIQGTAADIIKLAMINIQKVLDDKKLKSKMIL 833 Query: 627 TVHDEIVSETPDTPYFSVGTLCSLM 651 VHDE++ E ++ + + +++ Sbjct: 834 QVHDELIFEVVESE---LEEMKTIL 855 >gi|108799977|ref|YP_640174.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119869089|ref|YP_939041.1| DNA polymerase I [Mycobacterium sp. KMS] gi|108770396|gb|ABG09118.1| DNA polymerase I [Mycobacterium sp. MCS] gi|119695178|gb|ABL92251.1| DNA polymerase I [Mycobacterium sp. KMS] Length = 920 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 99/597 (16%), Positives = 183/597 (30%), Gaps = 86/597 (14%) Query: 16 LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNS 73 L VG AY A A D + D T L L D H + Sbjct: 357 LAVVGTHLAYDADATALAIVAADGDG--RYIDTTSLDPDDEAALASWLADPGPPKALHEA 414 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKAL 131 + G + LA P S L+L + + A Sbjct: 415 K---LAMHDLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLR-RELRADNPAQ 470 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 D + ++A + D E R L L E + + Sbjct: 471 QQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSL--LGRMELPVQRVL 528 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G +D+D + +LQ A + E + I + L+ LF + Sbjct: 529 AEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELEM 587 Query: 252 DLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 ++ H + L RL + ++ L +V+S Sbjct: 588 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT------VDGLLNSVAS 641 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 DGR+ T A+ TGR S QN+P + + Sbjct: 642 DGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEA------------------------G 676 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + +G ++ AD + IE R++A ++ + I+AF GED++ ++AF+ P Sbjct: 677 RRIRDAFVVGDGYTEVMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVP 736 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-- 474 ID+V+ + R K M L Y G A K + + Q+ + Sbjct: 737 IDEVTPDLRRRVKAMSYGLAYGLSAYGLAAQLKISTEEAKVQMDQYFARFGGIRDYLRDV 796 Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + +S + +++ A+ + G+A +++K A Q Sbjct: 797 VDQARKDGYTSTVFGRRRYLPELDSSNRNVREAAERAALNAPIQGSAADIIKVAMIDVDQ 856 Query: 516 GVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + ++ + + V +G + ++ + + + R Sbjct: 857 AIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSAYALDVPLEVSVGYGR 913 >gi|258508756|ref|YP_003171507.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|257148683|emb|CAR87656.1| DNA polymerase I [Lactobacillus rhamnosus GG] gi|259650062|dbj|BAI42224.1| DNA polymerase I [Lactobacillus rhamnosus GG] Length = 881 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 94/596 (15%), Positives = 192/596 (32%), Gaps = 87/596 (14%) Query: 28 AVITLCAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILF------ 80 I + A + E V + T++ S + L V +S + +F Sbjct: 324 FEIEMLADNYHTAEQVGFFIGTKEETYVSTDVSLLTIPEVAKWLGDSNRDLTVFDGKRNI 383 Query: 81 --KKTLGIDIPSKRWICTSVLARTNGLPSS----LKNACLALNFSEHLTKMEEGKALIAR 134 LG+ +P +LA P L ++ L + E+ Sbjct: 384 VAAHRLGLKLP--DIAFDVLLASYLINPDENSNDLGKIAEDHDY-HDLPRDEDV------ 434 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + KG+ P D + D+ ++ +D E L + + Sbjct: 435 YGKGAKRQVPEDKLLFEQFARKSQALFALRPDLTEDLAKQEQTDLFTDMEMPLARVLAEM 494 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 +G ++ + + +Q K L+E I G+ + L LF + ++ Sbjct: 495 EIQGITLNAQTLKDMGTEFSQSIKVLEEKIYG-EAGVKFNLNSPKQLGEVLFEKLNLPVI 553 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 ++ + + + +L + + KLN+ L +A D ++ Sbjct: 554 KKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQMPDHKIHTRY 611 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P ++ +R + Sbjct: 612 -LQTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFV 645 Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP-IDKVSKE 427 S ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + Sbjct: 646 PSHPDWQIFSSDYSQIELRVLSHISGDENMQQAFKHGVDIHANTAMKIFGLDSPDEVTPD 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------- 474 R K + Y G A+ + + + + + Sbjct: 706 MRRQAKATNFGIVYGISDYGLAQNIGISRKQAKAFIDGYFEQYPKVHDYMENMVKKARED 765 Query: 475 ------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW----RAKHQGVL 518 Q S + ++ A+ + G+A +++K A +A + L Sbjct: 766 GYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAMIRMQKALDEAHL 825 Query: 519 QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK 574 Q L + + + A+ VP+++ V + + S + D K Sbjct: 826 QAKMLLQVHDELIFEAPTAEMAQLGQLVPKIMDSAVSLAVPLKVESHYGPTWFDAK 881 Score = 41.3 bits (95), Expect = 0.49, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLM 651 +Q + DI+ M K ++L VHDE++ E P +G L +M Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAHLQAKMLLQVHDELIFEAPTAEMAQLGQLVPKIM 857 >gi|297626697|ref|YP_003688460.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922462|emb|CBL57035.1| Putative DNA polymerase I [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 892 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 92/552 (16%), Positives = 168/552 (30%), Gaps = 75/552 (13%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A+A + D E + L L D H + + + Sbjct: 347 LAFATTSDDAACVDVPELTPDDEKALAAWLTDPQATKAMHGAKGPLLAL---WARQLDLA 403 Query: 92 RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + LA P S LAL ++++ + + + P + Sbjct: 404 GLDSDTQLAAYLLRPDQRSYDLDDLALRHLGRELRVQDSEQVNQETLDFGSERQPAETAM 463 Query: 150 ANHVQAWQLFGEYCKR-DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 +L G D + R L L E L + + RG ID+D++ + Sbjct: 464 LRARAIAELAGVLDGELDDTSQRGLLHSL------EMPLERVLARMEQRGVAIDMDVLDQ 517 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L+ + ++ I + L+ LF + ++ + Sbjct: 518 LRSEYDARVQAAEQAAFAAIGTQI-NLGSPKQLQAVLFDQLDMPKTKRTKSGYTTDADAL 576 Query: 269 NITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + +KL +TL ++ S DGR+ T A TGR S Sbjct: 577 EKLYQKTRHPFLEHLLAYRDTIKLRQIIDTLIKSTSDDGRIHTTYVQTVAG-TGRLSSTD 635 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAG 383 QN+P + +R + G + L+ AD + Sbjct: 636 PNLQNIPIRT------------------------PEGRRIRDAFVPGEGFEGLMSADYSQ 671 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE RV+A +G+ I AFA+G D + T + F+ P+++V+ QR+ K M L Y Sbjct: 672 IEMRVMAAASGDKTLIHAFASGADFHSMTASHVFDVPVEQVTPAQRSSVKQMNYGLAYGL 731 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 G + + Q+ Q + D Sbjct: 732 SAYGLSSRLNVSVPEARALMDQYFQTFGPVRDYLDSLVEKARKQGYTETMLGRRRYLPDL 791 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVV 532 S + + A+ + GTA +++K A Q ++ + + V Sbjct: 792 NSSNRQRRQMAERMALNAPMQGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEV 851 Query: 533 QEGGSISARRVA 544 G +++ Sbjct: 852 AAGERDRVQQIV 863 Score = 41.3 bits (95), Expect = 0.62, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Query: 603 QAISRDILCEGMKNAT----KNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 Q + DI+ M +G ++L +HDE+V E V + Sbjct: 812 QGTAADIIKTAMLQVEQELSASGLRSRMLLQIHDELVLEVAAGERDRVQQIV 863 >gi|94991667|ref|YP_599766.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] gi|94545175|gb|ABF35222.1| DNA polymerase I [Streptococcus pyogenes MGAS2096] Length = 806 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 396 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 454 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 455 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 514 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 515 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 558 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 559 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 609 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 610 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQSKSYIDTY 669 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 670 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 729 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 730 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 779 >gi|19745349|ref|NP_606485.1| DNA polymerase I [Streptococcus pyogenes MGAS8232] gi|19747453|gb|AAL96984.1| DNA-directed DNA polymerase I [Streptococcus pyogenes MGAS8232] Length = 880 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 58/410 (14%), Positives = 126/410 (30%), Gaps = 64/410 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 470 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 528 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 529 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 588 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 589 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 632 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 633 ---------LEQGRLIRKAFTPSHEDAVLLGSDYSQIELRVLAHISGDEHLIAAFNEGAD 683 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 684 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 743 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 744 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 803 Query: 502 ACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A + ++ + + V + +++ Sbjct: 804 AADILKIAMINLDKALQAGGFRAKMLLQVHDEIVLEVPNDELTAIKKLVK 853 >gi|291280339|ref|YP_003497174.1| DNA polymerase I [Deferribacter desulfuricans SSM1] gi|290755041|dbj|BAI81418.1| DNA polymerase I [Deferribacter desulfuricans SSM1] Length = 789 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 137/396 (34%), Gaps = 72/396 (18%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E + + + G +I+ V ++ + + + K+++ I + L Sbjct: 388 EIELPVIDILFEMEKHGIKINEKKVYEINDELEENLKEIERKIFDYCKEEF-NLNSPKQL 446 Query: 242 RMYLFLITGIDLVDMSE---GTLKSILSHSNIT-----QLAKDLILNRLASSGSAILKLN 293 LF G++ ++ T + L +L ++ R S + LN Sbjct: 447 SFILFEKLGLEPAKKTKTGFSTSEEALQELKFKNPGHVELIDYILKYRELSKLKSTYTLN 506 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L ++ D R+ T + G + TGR S QN+P Sbjct: 507 -LLNYMADDKRIHTTFKQTG-TATGRISSINPNLQNIPVGSI------------------ 546 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R C A G + V D + IE R+LA ++ ++ I AF N EDI+ T Sbjct: 547 ------YGKRIRECFEAEKGYRFVSFDYSQIELRILASLSNDENLIDAFINDEDIHNKTA 600 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + F ++V + R + K + + Y G A+ S + ++++ Sbjct: 601 KEIFGV--EEVDPKHRRLAKAVNFGIIYGLSPYGLARDTGITQSEAKVFIERYFNLYPGV 658 Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + D + S + ++ + A+ + G+A +++K Sbjct: 659 KNYIDSIIKEAKEKGYTETILGRKRFIKDINSANRMLKQRAERIAINAPIQGSAADIIKL 718 Query: 509 AWRAKH----------QGVLQLWKDLTEGFACVVQE 534 A + + +LQ+ +L + E Sbjct: 719 AMINIYKYLQKTQIDVKMILQIHDELLFEVKEDIVE 754 >gi|324103779|gb|ADY17820.1| DNA polymerase [Eupelmus vesicularis secondary endosymbiont phage] Length = 234 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 102/234 (43%), Positives = 141/234 (60%), Gaps = 8/234 (3%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 DM TL+ ++ +I + ++L+ RL S ++ K L ++VS DGRLRGT QF GA Sbjct: 1 DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSVDGRLRGTKQFCGA 60 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIAS 371 SRTGRW+G +FQP NLPR ++ + + ++AL G D + L S +R CIIA Sbjct: 61 SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSK 426 GKKLV++DL+ IE R+LAW+AGE+WK+KAF+ G+D+Y YA+AFN V+K Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVKAFSEFDNGKGDDLYKLAYARAFNLLPKNVTK 180 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 QR IGKVMEL LGY GG F T A GL+L + ++ +A S Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLNLDELAEAALPNIPHNVKREAIS 234 >gi|290068|gb|AAC36974.1| DNA polymerase [Deinococcus radiodurans R1] gi|737486|prf||1922368A DNA polymerase I Length = 921 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 81/463 (17%), Positives = 137/463 (29%), Gaps = 78/463 (16%) Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-------- 182 L A + + P R + W T L + L PL D Sbjct: 466 LYAYLLDPANTNMPVVAKRYLD-REWPA---DAPTRAAITGHLVRELPPLLDDARRKMYD 521 Query: 183 -GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + + RG ++D D + L L+ I + R L Sbjct: 522 EMEKPLSGVLGRMEVRGVQVDSDFLQTLSIQAGVRLADLESQIHEYAGEEF-HIRSPKQL 580 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 L+ + ++ T + + S + L + L + KL + + Sbjct: 581 ETVLYDKLELASSKKTKLTGQRSTAVSALEPLRDAHPIIPLVLEFRELDKLRGTYLDPIP 640 Query: 297 EAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 V+ GRL T A TGR S QN+P + Sbjct: 641 NLVNPHTGRLHTTFA-QTAVATGRLSSLNPNLQNIPIRS--------------------- 678 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R IA +G L+ AD + IE R+LA IA + +AF G DI+ T A+ Sbjct: 679 ---ELGREIRKGFIAEDGFTLIAADYSQIELRLLAHIADDPLMQQAFVEGADIHRRTAAQ 735 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTST 471 V QR K + + Y A + ++ + Sbjct: 736 VLGLDEATVDANQRRAAKTVNFGVLYGMSAHRLSNDLGIPYAEAATFIEIYFATYPGIRR 795 Query: 472 FEDW---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + S + ++ A + GTA +++K A Sbjct: 796 YINHTLDFGRTHGYVETLYGRRRYVPGLSSRNRVQREAEERLAYNMPIQGTAADIMKLAM 855 Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +LQ+ +L E + ++V Sbjct: 856 VQLDPQLDAIGARMLLQVHDELLIEAPLDKAEQVAALTKKVME 898 >gi|83273487|ref|XP_729420.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23487175|gb|EAA20985.1| POM1 [Plasmodium yoelii yoelii] Length = 1813 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 84/528 (15%), Positives = 182/528 (34%), Gaps = 76/528 (14%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68 + G+ + E+ I L A ++ PV ++D + + L + L DE ++ Sbjct: 1263 YCGLDMETTGLEVFGEK--IRLIQIAVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1320 Query: 69 VAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 + N F+ + L I +I + +L + + N + S +L K ++ Sbjct: 1321 IIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQ 1380 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 + + +L+ + ++ ++ ++D E Sbjct: 1381 NSVWNNSLLNNNQLFYAARDSSC----LLKLYKKLSEQITAENMQI------VNDIENKC 1430 Query: 188 WLLDQTINDRGYRIDLDLV-LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + G ++DL+ + +++ + + D+ +L + I + + L Sbjct: 1431 ILPICDMELNGIKVDLESLNKSTDQILNELNVERDKLKKELKNDDI-NVNSQQQILKALQ 1489 Query: 247 LITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 DL + S+ LK+ ++H+ + L L +L S+ L ++ Sbjct: 1490 DNNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLYKLYSAF-----YLKLPLHINK 1544 Query: 302 -DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 ++ T + +GR+S Q +PRQ Sbjct: 1545 KTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ--------------------------- 1576 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R I + ++AD IE ++ A I ++ +KA+ N D++ T + Sbjct: 1577 -KNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKG 1635 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQAE 479 I++++KE R + K + L Y +T A+ Q S FE ++ Sbjct: 1636 INEINKEDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGLS 1695 Query: 480 SHHLWMQDQYP------------------EFAVKDKLIGTACELVKKA 509 H ++ A+ + GT +++K A Sbjct: 1696 RWHNSVKQTKALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADILKLA 1743 Score = 44.3 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 5/107 (4%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 + + SR Y + +++ K VQ DI Sbjct: 1680 CLYFYNSFFEHYKGLSRWHNSVKQTKALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADI 1739 Query: 610 LCEGM----KNATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651 L + KN I+L VHDEI+ E ++ L M Sbjct: 1740 LKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALKILVESM 1786 >gi|300863439|ref|ZP_07108394.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] gi|300338502|emb|CBN53536.1| putative DNA polymerase I [Oscillatoria sp. PCC 6506] Length = 597 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 104/621 (16%), Positives = 201/621 (32%), Gaps = 128/621 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + ID ET PL + I L A PV + D + L+ L Sbjct: 35 RVIGIDTETTGLDPLTER----------IRLIQIAAPQHPVIIVDLAALADSELSPLKAL 84 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEH 121 + + + V N F+ + + + +LA Sbjct: 85 LNSSALKVFQNGKFDWQVLEMA---GLRPSGPFFDVMLASQV--------------LRSG 127 Query: 122 LTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL---- 177 L K + ++L F +D A + A QL EY D +L RL Sbjct: 128 LKKDHDLQSLTFEFLGIKLDKSLQSSNFAGKLSASQL--EYAALDAAVLLKLRARLHSKL 185 Query: 178 -----IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 + + E + G +D++ + E + +++ ++VK Sbjct: 186 RSAGLLETAKIEFAAMPAVAQMELNGMLLDVEQWHLVGEELKAQKQATLVELVKAGLKPA 245 Query: 233 R--------------SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLI 278 + R + + L I + S+ + +A+ Sbjct: 246 PSAQLSLFPDMVETINPRSSVQVLSAL-QALNIPIKSTSKS---------ELIPIARQYP 295 Query: 279 LNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 + +L + + L L + + GR+ + + GA R+GR+S QN+PR Sbjct: 296 VIQLLLNYRKLASLCSNFAEALPKHIHQITGRIHPSYRQCGA-RSGRFSCKQPNLQNVPR 354 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 +R+C IA G +++ AD + IE R++A I Sbjct: 355 N-------------------------CTVKGMRACFIAPPGYQIIKADYSQIELRIVAEI 389 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA 452 +G+ + A+ GED++ T + +++V+ E R I K + L Y GA + A Sbjct: 390 SGDAKMLDAYVKGEDLHTLTASLITGKLLEEVTTEDRRIAKSVNFGLIYGMGAAKLQAYA 449 Query: 453 ----------SHCGLDLQQFSQNVKSTSTFED--------------WEQAESHHLWMQDQ 488 ++F Q + D W + Sbjct: 450 EEKYDVLLTLEEAKEFRKRFFQAYSGVKRWHDSIRRTVYVKDIKQIRTIGGRRRRWAKKP 509 Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548 + + GT+ +++K A + +L+K L + A ++ + + P+ Sbjct: 510 RLSELLNHPVQGTSADMLKVA-------IARLFKLLPKTGAKLI---AVVHDEILLECPQ 559 Query: 549 LVMRRHKRDVHIVLPSSRRLV 569 ++R + V+ + L Sbjct: 560 TTLKRTSCILKKVMVEAGELY 580 Score = 45.1 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 12/104 (11%) Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-- 601 + + + V S RR VY + + ++ +L+E + Sbjct: 463 KEFRKRFFQAYSG-VKRWHDSIRRTVYVKDIKQIRTIGGRRRRWAKK----PRLSELLNH 517 Query: 602 -VQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDTP 640 VQ S D+L + K G ++ VHDEI+ E P T Sbjct: 518 PVQGTSADMLKVAIARLFKLLPKTGAKLIAVVHDEILLECPQTT 561 >gi|284006861|emb|CBA72127.1| phage DNA polymerase [Arsenophonus nasoniae] Length = 181 Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats. Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 3/177 (1%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LF D+ET S P+ G YAE A I L AY+++ PVK+WD T+ MP+DL YL D Sbjct: 5 LFCDLETYSDIPI-NCGTHRYAENAEILLFAYSYNHGPVKVWDVTQDKTMPTDLKAYLDD 63 Query: 64 ETVMCVAHN-SLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHL 122 ++ V HN +F+ ++ K L ID+P R T V A +GLP +L + C N + Sbjct: 64 PEILTVWHNGGMFDTVILSKVLNIDLPLSRVHDTLVQALAHGLPGALGSLCDIFNVNSDK 123 Query: 123 TKMEEGKALIARFCKG-SIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K +EGKALI FCK +S T H + W F Y D+ A RE+++ L Sbjct: 124 AKDKEGKALIQLFCKPRPKNSKIQRATALTHFEEWLRFKTYAGSDILAMREIYQHLP 180 >gi|237752927|ref|ZP_04583407.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] gi|229375194|gb|EEO25285.1| DNA polymerase I [Helicobacter winghamensis ATCC BAA-430] Length = 889 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 88/534 (16%), Positives = 185/534 (34%), Gaps = 88/534 (16%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLA--RTNGLPSSLKNA 112 + + L + V+ + HN ++ + S + +LA + +P +L + Sbjct: 376 EFINSLFNAKVV-IGHNLKYDLEILHTNFNFTPKSYHNIKDSMLLAWLYQSDMPCNLDDL 434 Query: 113 CLALNFSEHLTKMEEGKALIARFCKGSIDSP-PYDCTRANHVQAWQLFGEYCKRDVEATR 171 +A F + ++ F + I++ Y C A +QLF + ++ + Sbjct: 435 -MARYFKHTMIAFKDIIKKGENFSQLPIENAFTYACEDA--AACYQLFFKINSLLPKSLQ 491 Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 E+ + E + G +I++ L+ + ++ + L ++I L + Sbjct: 492 EVAN------NVEFPFIQCLVNMELSGTKINIKYFKNLKSEMTEKLQALSQEIYTLANKR 545 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS--------HSNITQLAKDLILNRLA 283 + L + LF + ++ L + S H I ++ + L +L Sbjct: 546 F-NLNSPQQLSIVLFEELNLQSGKKTKSGLSTNSSVLNSLRDSHPIIPKVLEYRELFKLY 604 Query: 284 SSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 S+ + L E S D ++ + G + TGR S QN+P Sbjct: 605 STY-----IEPLIELASQDPAHKVYTSFMQTG-TSTGRLSSKNPNLQNIP---------- 648 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R IA G L+ D + IE R+LA + + I+A Sbjct: 649 --------------VKTQQGRRIREGFIAQEGHLLLSLDYSQIELRLLAHFSQDSAMIEA 694 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGL 457 F DI++ T K F +++++E+R++ K + L Y GA+ + Sbjct: 695 FHKEADIHLETAKKIFG---EELAQEKRSVAKSINFGLIYGMGARKLSETLQINHQEAKS 751 Query: 458 DLQQFSQNVKSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDK 497 +Q + Q+ + F E+ + + + + Sbjct: 752 YIQNYFQSFPTVKNFLKEQEEFILKNGYSLTLLGRMRKFSFENIQEFQKVAFLREGINAI 811 Query: 498 LIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 G+A +++K A Q +LQ+ +L + E + ++ Sbjct: 812 FQGSAADIIKLAMIQITQEKLESKLLLQMHDELIFEAPKNIAETEAKKIAQIME 865 Score = 44.3 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 601 IVQAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651 I Q + DI+ M K ++L +HDE++ E P + +M Sbjct: 811 IFQGSAADIIKLAMIQITQEKLESKLLLQMHDELIFEAPKNIAETEAKKIAQIM 864 >gi|324103777|gb|ADY17819.1| DNA polymerase [Spalangia cameroni secondary endosymbiont phage] Length = 234 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 102/234 (43%), Positives = 142/234 (60%), Gaps = 8/234 (3%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 DM TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GA Sbjct: 1 DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKXKALLKSVSADGRLRGTKQFCGA 60 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIAS 371 SRTGRW+G +FQP NLPR ++ + + ++AL G D + L S +R CIIA Sbjct: 61 SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSK 426 GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+AFN V+K Sbjct: 121 QGKKLVISDLSNIEGRMLAWLAGENWKVNAFSEFDNGKGDDLYKLAYARAFNLLPKNVTK 180 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 QR IGKVMEL LGY GG F T A GLDL + ++ + +A S Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDELAEAALPNIPHKVKREAIS 234 >gi|306822947|ref|ZP_07456323.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] gi|304553579|gb|EFM41490.1| DNA-directed DNA polymerase I [Bifidobacterium dentium ATCC 27679] Length = 950 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 71/409 (17%), Positives = 151/409 (36%), Gaps = 73/409 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E + + + G ++D+ + ++++ A + ++ E + + + + Sbjct: 540 LKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWESAGERV-NLQSPK 598 Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+++ HS A + L + LK Sbjct: 599 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLK 658 Query: 292 --LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + TL +A + DGR+ T + A+ TGR S QN+P + Sbjct: 659 QIVQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 702 Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 A +RS + G + L+ +D + +E R++A ++G++ I+AF +G D Sbjct: 703 ---------NAAGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRD 753 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+++++ +QR+ K M L Y G A+ K Q+ Sbjct: 754 FHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLSTYGLAQQLKISPKEAESLRNQYF 813 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + +S + ++D A+ + G+A Sbjct: 814 ATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSA 873 Query: 503 CELVKKAWRAK----------HQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A E + R Sbjct: 874 ADIMKIAMIRASDSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVR 922 >gi|56808533|ref|ZP_00366268.1| COG0749: DNA polymerase I - 3'-5' exonuclease and polymerase domains [Streptococcus pyogenes M49 591] Length = 418 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 56/375 (14%), Positives = 117/375 (31%), Gaps = 58/375 (15%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E L + + G +++ + + E + L ++I + Sbjct: 8 HEQLDLYQNIELPLANVLAKMEIEGIKVNRATLQDMAEQNKVIIEALTQEIYDMAGQEF- 66 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + L + + + +LA + I KL Sbjct: 67 NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVLERLAPIAPIVAKILDYRQITKLQ 126 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + +DG++ ++TGR S QN+P + Sbjct: 127 STYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDPNLQNIPIR--------------- 170 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R S L+ +D + IE RVLA I+G++ I AF G D Sbjct: 171 ---------LEQGRLIRKAFTPSHEDAVLLSSDYSQIELRVLAHISGDEHLIAAFNEGAD 221 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F V+ R K + + Y G + + + Sbjct: 222 IHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGISDFGLSNNLGITRKQAKSYIDTY 281 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + + + S + ++ A+ + G+ Sbjct: 282 FERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 341 Query: 502 ACELVKKAWRAKHQG 516 A +++K + + Sbjct: 342 AADILKISMINLDKA 356 >gi|229105215|ref|ZP_04235864.1| DNA polymerase I [Bacillus cereus Rock3-28] gi|228678141|gb|EEL32369.1| DNA polymerase I [Bacillus cereus Rock3-28] Length = 890 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 160/489 (32%), Gaps = 86/489 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L + + ++ + K GIDI + ++A L A Sbjct: 369 EAFKAWLANGEMRKHTFDAKRAIVALK-WKGIDIQGIDF--DLLIAAYL-----LDPADT 420 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 421 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 472 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 473 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 532 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 533 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 589 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 590 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 643 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 644 -------------------LEEGRKIRQAFVPSEEGWIIYAADYSQIELRVLAHIANDKG 684 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 685 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 744 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + D + S + ++ Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 804 Query: 493 AVKDKLIGT 501 A+ + G+ Sbjct: 805 AMNTPIQGS 813 >gi|293400879|ref|ZP_06645024.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305905|gb|EFE47149.1| DNA polymerase I [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 865 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 65/382 (17%), Positives = 127/382 (33%), Gaps = 72/382 (18%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + G D ++ K+ + + L I ++ + L Sbjct: 472 IEMPLTRVLYAMEKEGVYCDKAVLQKIADETEAKINALSLQIYEIAGMEF-NINSPKQLA 530 Query: 243 MYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSE 297 L+ G+ + K + + +L + L K+ + L++ Sbjct: 531 SVLYDELGL------KAGKKRSTAADVLEKLVHVHPIIPLLLEHRKYQKIYSTYAIGLAK 584 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + +DG++ ++TGR S QN+ Sbjct: 585 HILADGKIHTLFNQI-QTQTGRLSSSEPNLQNIS------------------------VR 619 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +AS G L+ AD + IE R+LA +A E+ I AF + DI+ T + F Sbjct: 620 NEEGKGIRKAFVASEGHVLLSADYSQIELRMLAHMADEEQMIDAFNHDIDIHTKTAMQIF 679 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 + D+V R K + + Y G ++ ++++ + TF Sbjct: 680 DVAHDEVDANMRRSAKTVNFGIVYGQSDFGLSEQLGISRKEAHTFIEKYFASYPKIKTFM 739 Query: 474 DWEQAE---------------------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-- 510 D A + M++ A+ + G+A +L+K A Sbjct: 740 DATIAYCEEHGYVKTLYNRRRYIKEIADKNYMMREFGKRAAMNAPIQGSAADLIKMAMIH 799 Query: 511 --------RAKHQGVLQLWKDL 524 + K + +LQ+ +L Sbjct: 800 IYQKMQEEKVKSRMILQIHDEL 821 >gi|254303697|ref|ZP_04971055.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323889|gb|EDK89139.1| DNA-directed DNA polymerase I [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 914 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 70/371 (18%), Positives = 138/371 (37%), Gaps = 59/371 (15%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ + E L + + +G ID+ + +E ++++ I + Sbjct: 507 DLYKVLM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSVELDKELLRIEKAIYEEAGEE 563 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 564 F-NINSPKQLGDILFVKMNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 622 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ + G + TGR S QN+P + Sbjct: 623 KTTYVDTLPLLVDENSRIHTSFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 670 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R IA GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 671 -------------GIKIREGFIAGEGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 717 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 718 LHDLTARRIFNLADSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 777 Query: 463 SQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGT 501 + +TFE +S + ++ Q AV + GT Sbjct: 778 FEQYPRVTTFEKEVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 837 Query: 502 ACELVKKAWRA 512 A E++KK Sbjct: 838 AAEVLKKVMVK 848 Score = 44.0 bits (102), Expect = 0.078, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 806 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDIALLLQV 865 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E + + +M Sbjct: 866 HDELIFEVEKSSVEKYSEILADIM 889 >gi|229076089|ref|ZP_04209057.1| DNA polymerase I [Bacillus cereus Rock4-18] gi|228706952|gb|EEL59157.1| DNA polymerase I [Bacillus cereus Rock4-18] Length = 890 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 160/489 (32%), Gaps = 86/489 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L + + ++ + K GIDI + ++A L A Sbjct: 369 EAFKAWLANGEMRKHTFDAKRAIVALK-WKGIDIQGIDF--DLLIAAYL-----LDPADT 420 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 421 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 472 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 473 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 532 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 533 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 589 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 590 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 643 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 644 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 684 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 685 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 744 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + D + S + ++ Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 804 Query: 493 AVKDKLIGT 501 A+ + G+ Sbjct: 805 AMNTPIQGS 813 >gi|229118078|ref|ZP_04247437.1| DNA polymerase I [Bacillus cereus Rock1-3] gi|228665301|gb|EEL20784.1| DNA polymerase I [Bacillus cereus Rock1-3] Length = 890 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 160/489 (32%), Gaps = 86/489 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L + + ++ + K GIDI + ++A L A Sbjct: 369 EAFKAWLANGEMRKHTFDAKRAIVALK-WKGIDIQGIDF--DLLIAAYL-----LDPADT 420 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 421 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 472 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 473 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 532 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 533 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 589 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 590 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 643 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 644 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 684 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 685 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 744 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + D + S + ++ Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 804 Query: 493 AVKDKLIGT 501 A+ + G+ Sbjct: 805 AMNTPIQGS 813 >gi|302528122|ref|ZP_07280464.1| DNA polymerase I [Streptomyces sp. AA4] gi|302437017|gb|EFL08833.1| DNA polymerase I [Streptomyces sp. AA4] Length = 912 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 92/559 (16%), Positives = 182/559 (32%), Gaps = 85/559 (15%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKR 92 A+A D D T L L D + + H+ + Sbjct: 364 AFATADGEGAYVDVTAMDEADDRALSAWLADPEIRKIGHDLK---VPLHAVRARGWTFGG 420 Query: 93 WICTSVLARTNGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + LA P L + L E ++ +G ++ G D Sbjct: 421 LNMDTALAAYLARPGQRTFGLDDLALRYLHRELRSEAGDGDGQLSLLD-GGADELEQKEI 479 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A V+A +F + A E L++ E L + + G +D D + + Sbjct: 480 SAELVKARAIFELAGA--LAAELEELGGAKLLAELELPLLEVITELEAAGIAVDTDQLTE 537 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------ 262 L+ + E ++ I + L++ LF G+ ++ Sbjct: 538 LEAHYLSRVTQAAESAYEVIGKQI-NLGSPKQLQVVLFDELGMPKTKRTKTGYTTDADAL 596 Query: 263 ----SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTG 318 H + L + RL ++ + L ++V+ DGR+ TLQ A+ TG Sbjct: 597 QSLFEKTEHPFLQHLLEHRDATRLRTT------VEGLIKSVADDGRIHTTLQQTIAA-TG 649 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLV 377 R S QN+P + +R + +G +L+ Sbjct: 650 RLSSIEPNLQNIPVRT------------------------EEGRRIRDAFVVGDGYAELM 685 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R++A ++ ++ I+AF +GED++ ++AF+ P +++ EQR K M Sbjct: 686 TADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHTFVASRAFSVPAAEITPEQRYRVKAMSY 745 Query: 438 ALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED------------------- 474 L Y G ++ K ++ + + Sbjct: 746 GLAYGLSAYGLSQQLKISTEDAKEQMEAYFSRFGGVRDYLQSVVGEAAKCGYTETIFGRR 805 Query: 475 --WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ------GVLQLWKDLTE 526 S + ++ A+ + G+A +++K A H+ ++ + + Sbjct: 806 RYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALAEAGARSRVLLQVHD 865 Query: 527 GFACVVQEGGSISARRVAN 545 + +G ++ Sbjct: 866 ELVLEIADGERSDVEKLVR 884 >gi|251783393|ref|YP_002997698.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392025|dbj|BAH82484.1| DNA polymerase I [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 880 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 73/514 (14%), Positives = 160/514 (31%), Gaps = 70/514 (13%) Query: 32 LCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFER-ILFKKTLGIDIPS 90 + +AW +++ T+ S + +DL + + ++ + F+R + LGI++ + Sbjct: 338 IIGFAWGHGE-QIYASTDLSLLSTDLFKKVFEKPIATY----DFKRSKVLLSHLGIELVA 392 Query: 91 KRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + + LA ++ + + KG + P Sbjct: 393 PSY--DARLANYLLSNVEDNELTTIARLFTDISLEADDSI----YGKGVKRAVPEKEVLL 446 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H+ + + ++ + E L + + G +++ + + Sbjct: 447 GHLARKVKVLLDSRAPMVEKLADHDQIDLYHEIELPLANVLAKMEIEGIKVNRATLQDMA 506 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 E + L ++I + + L LF + L + + + Sbjct: 507 EQNKVIIEALTQEIYDMAGQEF-NINSPKQLGSILFEKMQLPLEMTKKTKTGYSTAVDVL 565 Query: 271 TQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVF 325 +LA + I KL + L + + +DG++ ++TGR S Sbjct: 566 ERLAPIAPIVAKILDYRQITKLQSTYVIGLQDYILADGKIHTRYV-QDLTQTGRLSSVDP 624 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGI 384 QN+P + +R S L+ +D + I Sbjct: 625 NLQNIPIR------------------------LEQGRLIRKAFTPSHEDAVLLSSDYSQI 660 Query: 385 EARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ- 442 E RVLA I+G++ I AF G DI+ +T + F V+ R K + + Y Sbjct: 661 ELRVLAHISGDEHLIAAFNEGADIHTSTAMRVFGIDKAADVTANDRRNAKAVNFGIVYGI 720 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE---------------------DWEQA 478 G + + + + + + Sbjct: 721 SDFGLSNNLGITRKQAKSYIDTYFERYPGIKAYMENVVREAKDKGYVETLFKRRRELPDI 780 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 S + ++ A+ + G+A +++K A Sbjct: 781 NSRNFNVRSFAERTAINSPIQGSAADILKIAMIN 814 >gi|88607943|ref|YP_504640.1| DNA polymerase I [Anaplasma phagocytophilum HZ] gi|88599006|gb|ABD44476.1| DNA polymerase I [Anaplasma phagocytophilum HZ] Length = 853 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 134/395 (33%), Gaps = 60/395 (15%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 ER L + + G +ID +L+ +L + + L+E+I L + L Sbjct: 455 ERPLVPVIYELEKTGIKIDTELLKQLSDEFSLSISNLEEEIFGLAGCKFNIASS-QQLGK 513 Query: 244 YLFLITGIDLVDMSEG----TLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLSEA 298 LF I T +L+ + + D IL + + L Sbjct: 514 VLFEHMRIGGAKKMPSGSYCTNAEVLTALALDGVEVADKILKWRHFTKLKSTYTDALVRQ 573 Query: 299 VSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 V + GR+ A+ TGR S QN+P + + Sbjct: 574 VDANTGRVHTKYSM-TATATGRLSSSNPNLQNIPIRSKD--------------------- 611 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 + +RS IA G KL+ AD + +E ++LA IA +AFA G DI+V T + F Sbjct: 612 ---GEKIRSAFIAEKGHKLIAADYSQMELKILAHIADVKAFRQAFAEGLDIHVVTAQQIF 668 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ E R K + + Y G A+ ++Q+ Q + Sbjct: 669 G-EYYEIDYELRRRAKSINFGIIYGMGSYGLARNIGISRREASEYVEQYFQYYPEIKRYM 727 Query: 474 DWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + +A + + A+ + GTA ++VKKA Sbjct: 728 ETTKAYAKKHGYTITAFGRKCFIEGINSPKRALSSVAERAAINAPIQGTAADIVKKAMVR 787 Query: 513 KHQGVLQ--LWKDLTEGFACVVQEGGSISARRVAN 545 + Q + + + V E +S R+ Sbjct: 788 LQDRLTQGTMLLQVHDELLVEVPEEHVLSVARLMK 822 >gi|120404335|ref|YP_954164.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] gi|119957153|gb|ABM14158.1| DNA polymerase I [Mycobacterium vanbaalenii PYR-1] Length = 909 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 91/526 (17%), Positives = 166/526 (31%), Gaps = 89/526 (16%) Query: 39 DEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTS 97 D + D T L L D H + + G + Sbjct: 368 DGDGRYIDTTRLDPEDEKALASWLADPDAPKALHEAK---LAMHDLQGRGWTLAGVTSDT 424 Query: 98 VLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 LA P S L+L + K + D + A QA Sbjct: 425 ALAAYLVRPGQRSFALDDLSLRYL---------KRELRADNPEQQQLSLLDDSDAVDDQA 475 Query: 156 WQLFGEYCKRDVEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 Q V+ L + L L E + + + G +DL ++ +L Sbjct: 476 VQTLLLRAGAVVDLADALDEELARIDSSALLGSMELPVQRVLAQLETVGIAVDLAMLSEL 535 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262 Q A + + E + I + L++ LF + ++ Sbjct: 536 QSEFAGQIRDAAEAAYAVIGKQI-NLGSPKQLQVVLFDELEMPKTKRTKTGYTTDADALQ 594 Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 H + L RL + ++ L +V++DGR+ T A+ TGR Sbjct: 595 SLFDKTGHPFLQHLLAHRDATRLKVT------VDGLLNSVAADGRIHTTFNQTIAA-TGR 647 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P + A +R + G L+ Sbjct: 648 LSSTEPNLQNIPIRT------------------------EAGRRIRDGFVVGEGYADLMT 683 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++ + I+AF GED++ ++AF+ P+D+V+ E R K M Sbjct: 684 ADYSQIEMRIMAHLSKDAGLIEAFNTGEDLHSFVASRAFSVPLDEVTPELRRRVKAMSYG 743 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474 L Y G ++ K ++Q+ + Sbjct: 744 LAYGLSAYGLSQQLKISTEEAKEQMEQYFARFGGVRDYLRDVVDQARKDGYTSTVFGRRR 803 Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519 + +S + +++ A+ + G+A +++K A Q + + Sbjct: 804 YLPELDSSNRQVREAAERAALNAPIQGSAADIIKVAMINVDQAIKE 849 >gi|68075407|ref|XP_679621.1| POM1 [Plasmodium berghei strain ANKA] gi|56500410|emb|CAH98073.1| POM1, putative [Plasmodium berghei] Length = 1808 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 84/529 (15%), Positives = 184/529 (34%), Gaps = 78/529 (14%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68 + G+ + E+ I L + ++ PV ++D + + L + L DE ++ Sbjct: 1258 YCGLDMETTGLEVFGEK--IRLIQISVENYPVIIYDMFNITNNNILDGLRKILNDENIVK 1315 Query: 69 VAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 + N F+ + L I +I + +L + + N + S +L K ++ Sbjct: 1316 IIQNGKFDTKFLLYNNFNITNIFDTYIASKLLDKNKNMYGFKLNNIVEKYLSVYLDKQQQ 1375 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDGERD 186 + + +L + +++ ++ + ++P+ D E + Sbjct: 1376 NSVWNNSLLNNNQLFYAARDSSCLLKLYKKLSEQIKAENMQIVNDIENKCILPICDMELN 1435 Query: 187 LWLLDQTINDRGYRIDLD-LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYL 245 G ++DL+ L +++ + + D+ +L + I + + L Sbjct: 1436 -----------GIKVDLENLNKSTDQILNELNVERDKLKKELKNEDI-NVNSQQQILKAL 1483 Query: 246 FLITGIDL-----VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS 300 DL + S+ LK+ ++H+ + L L +L S+ L ++ Sbjct: 1484 QDNNVRDLSNKLIDNTSDANLKNFINHNAVILLRNYRKLYKLYSAF-----YLKLPLHIN 1538 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++ T + +GR+S Q +PRQ Sbjct: 1539 KKTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ-------------------------- 1571 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I + ++AD IE ++ A I ++ +KA+ N D++ T + Sbjct: 1572 --KNIREIFIPTENNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKK 1629 Query: 420 PIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQA 478 I++++KE R + K + L Y +T A+ Q S FE ++ Sbjct: 1630 GINEINKEDRHVAKAINFGLLYGMNYVNLRTYANTYYNVKMNLDQCLYFYNSFFEHYKGL 1689 Query: 479 ESHHLWMQDQYP------------------EFAVKDKLIGTACELVKKA 509 H ++ A+ + GT +++K A Sbjct: 1690 SRWHNIVKQTKALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADILKLA 1738 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 32/107 (29%), Gaps = 5/107 (4%) Query: 550 VMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDI 609 + + SR Y + +++ K VQ DI Sbjct: 1675 CLYFYNSFFEHYKGLSRWHNIVKQTKALEYSTLSNRKVVFPYFSFTKALNYPVQGTCADI 1734 Query: 610 LCEGM----KNATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651 L + KN I+L VHDEI+ E ++ L M Sbjct: 1735 LKLALVELYKNLRHINGKIILCVHDEIIIEVDKKHQEEALRILVESM 1781 >gi|325294546|ref|YP_004281060.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064994|gb|ADY73001.1| DNA polymerase I [Desulfurobacterium thermolithotrophum DSM 11699] Length = 838 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 62/400 (15%), Positives = 136/400 (34%), Gaps = 56/400 (14%) Query: 183 GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALR 242 E L + + RG D + + + + ++ K++++ I ++ + L Sbjct: 445 IEHPLTFVLYKMEKRGVLFDKEYLENFGKELDRKSKEIEKKIFEIAGEKF-NLNSPKQLS 503 Query: 243 MYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 LF + + ++ ++++ + + +L+L + + + + Sbjct: 504 KILFEKLKLKPLKKTKSGYSTDVETLTALALKGHKIAELLLEYRKLTKLNSTFVKGILKH 563 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + DGR+R T G + TGR S QNLP Sbjct: 564 MDEDGRVRTTFIQTG-TATGRLSSAEPNLQNLP------------------------VSD 598 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 S +R + A G LV AD + IE R+LA ++ ++ ++A+ G DI+ T + F Sbjct: 599 EISKKIRYAVTAPAGYNLVWADYSQIELRILAHLSQDEKLLEAYRKGRDIHTETASYLFG 658 Query: 419 TPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTFED 474 ++V + R I K + + Y + ++ + + + Sbjct: 659 ISAEEVDERLRRIAKTVNFGIIYGMSPHGLSERLGISVEEAEKYIDRYFEKFPKVKEYIE 718 Query: 475 WEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAWRAK 513 E++ AV + GTA +++K A Sbjct: 719 NTLREAYEKGYVKTIFGRKRPLPELKSSNKNIRSFGERAAVNATIQGTAADIMKLAMVKL 778 Query: 514 HQGVLQLW-KDLTEGFACVVQEGGSISARRVANVPRLVMR 552 ++ + +L + + +V E + + + M Sbjct: 779 YKKLEKLGAYMVLQVHDEIVIEALEEKTEEIMKIVKETME 818 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 6/117 (5%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 A + + + K + L + Y + G L S R++G + Sbjct: 698 EAEKYIDRYFEKFPKVKEYIENTLREAYEKGYVKTIFGRKRPLPELKSSNKNIRSFGERA 757 Query: 598 TENIV-QAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 N Q + DI+ M K K G +VL VHDEIV E + + + Sbjct: 758 AVNATIQGTAADIMKLAMVKLYKKLEKLGAYMVLQVHDEIVIEALEEKTEEIMKIVK 814 >gi|319950978|ref|ZP_08024849.1| DNA polymerase I [Dietzia cinnamea P4] gi|319435360|gb|EFV90609.1| DNA polymerase I [Dietzia cinnamea P4] Length = 899 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 88/545 (16%), Positives = 169/545 (31%), Gaps = 75/545 (13%) Query: 45 WDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN 103 D LQ L D+ V H++ +G D+ LA Sbjct: 356 VDLAAIGPDDEQALQGWLGDDAVHKAVHDAKAATHAL---MGRDLRLGGVTMDVALAAYL 412 Query: 104 GLPSSLKNACLAL---NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFG 160 P L + L + E + ++ + A +A + Sbjct: 413 VRPGQRSYGLAELFQRHLRRELPEAEAAEKQLSLLDEVDDAEAAQRAADAAATRARAVVD 472 Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + DVE ++ + +++ E L + + G +D + L++ A ++ Sbjct: 473 LAERLDVELE-QVHGATL-MAEMELPLVPVLARMESIGIAVDASALNGLRDDFADRGRQA 530 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQL 273 E G + L++ LF G+ L+ +L+ Sbjct: 531 AEAAYAAIGGEQINLGSPKQLQVVLFETLGMPKTKKTKTGYTTDAKALEELLAKETGDTP 590 Query: 274 AKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + + L + ++ + L + + D R+ T A+ TGR S QN+P Sbjct: 591 GRAFLEALLLHRETTKMRTTVEGLIKTIGDDRRIHTTFNQTVAA-TGRLSSTDPNLQNIP 649 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 + +R + G L+ AD + IE RV+A Sbjct: 650 VRTED------------------------GRRIRGSFVVGEGYDCLLTADYSQIEMRVMA 685 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 ++G+ I+AF GED++ ++AF PID+V+ E R K M L Y G A Sbjct: 686 HLSGDAGLIEAFRTGEDLHSFVGSRAFGVPIDQVTPELRRRVKAMSYGLAYGLSAFGLAA 745 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485 ++ + + ++ + Sbjct: 746 QLGISQGEAREQMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRYLPELNSDNRLK 805 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSIS 539 ++ A+ + GTA +++K A + +L + + V G Sbjct: 806 RENAERAALNAPIQGTAADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDE 865 Query: 540 ARRVA 544 R + Sbjct: 866 VRGLV 870 Score = 41.3 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 40/118 (33%), Gaps = 8/118 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKL 597 AR + + V+ +R+ Y++ G YL S +R + Sbjct: 753 EAREQMEAYFSRFGGVRDYLQAVVEQARKDGYTETLFGRRRYLPELNSDNRLKRENAERA 812 Query: 598 TENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q + DI+ M G ++L VHDE+V E V L Sbjct: 813 ALNAPIQGTAADIIKAAMLKVDADLTARGLKSRLLLQVHDELVLEVAPGELDEVRGLV 870 >gi|317509158|ref|ZP_07966782.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] gi|316252515|gb|EFV11961.1| DNA polymerase I [Segniliparus rugosus ATCC BAA-974] Length = 904 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 84/496 (16%), Positives = 150/496 (30%), Gaps = 75/496 (15%) Query: 54 PSDLLQY---LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLK 110 P D+ L D V H + + + G + LA P Sbjct: 376 PEDVRALDGWLADPAVPKAFHEAKWATHALR--GGGFAEIAGVTTDTGLAAYIARPGQRS 433 Query: 111 NACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEAT 170 L ++ + + + +A + D Sbjct: 434 FNLPDLALRYLRRQLGPEDGGEKQLSLLDDSTGEDKEADDSITEAAAIRELGGALDDVLD 493 Query: 171 RELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG 230 + L L E L + + + G +D D + L A K+ E + Sbjct: 494 KAGSADL--LRTMELPLTFVLARMEEAGIAVDQDGLAGLHADFAARVKQAAESAYSVIGK 551 Query: 231 IIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKDLILN 280 I + L++ LF G+ L+ + H + L + Sbjct: 552 EI-NLGSPKQLQVVLFDELGMPKTKKTKTGHTTDADALQWLFEKTEHPFLLYLLEHRDAT 610 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 RL ++ L +A+ DGR+ T + + TGR S QN+P + Sbjct: 611 RLMTT------AQGLIKAIGPDGRIHTTFR-QDVAATGRLSSTDPNLQNIPVRT------ 657 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399 + +R + G + L+ AD + IE R++A ++G+D I Sbjct: 658 ------------------DEARRIRGVFVVGEGHEALMTADYSQIEMRIMAHLSGDDGLI 699 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +AF GED++ ++AF PID+V E R K M L Y G A Sbjct: 700 EAFRTGEDLHNFVASRAFGVPIDEVGAELRRRVKAMSYGLAYGLSAFGLASQLGVSGEEA 759 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 + + + E+ + + A+ Sbjct: 760 KAQMDAYFARFGGVRDYLHAVVEEARRKGYTETLFGRRRYLPDLTSDNQQQRAVAERAAL 819 Query: 495 KDKLIGTACELVKKAW 510 + G+A +++K A Sbjct: 820 NAPIQGSAADIIKVAM 835 >gi|300173072|ref|YP_003772238.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] gi|299887451|emb|CBL91419.1| DNA polymerase I [Leuconostoc gasicomitatum LMG 18811] Length = 893 Score = 211 bits (538), Expect = 2e-52, Method: Composition-based stats. Identities = 84/490 (17%), Positives = 161/490 (32%), Gaps = 67/490 (13%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 +L + + ++ N + IL K+ LGI + ++ V + + + A LA Sbjct: 372 ELKSVIENAGIIKNVFNIKAQLILLKR-LGIKLKGTKFDFLLVSYLLDTTDNDNELATLA 430 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDS--PPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 F ++T E+ A+F D+ + +A+ + + E D Sbjct: 431 QRFDLYMTSDEDIYGKGAKFAIPEDDARVLAHLANKADIL----MQVEQSAFDALQE--- 483 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ ++ E L + + +G +ID + + + R ED + + G Sbjct: 484 HEQTHLYTEIELPLAQVLADMEYQGIKIDQKRL-RDIGSDLEGRIHAIEDAIYIEAGEKF 542 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAIL 290 + L + LF G+ +V ++ T +L D IL + Sbjct: 543 NINSPKQLGVLLFEKMGLPVVKRTKTGYSTAVDVLEKLAAQAPIVDHILQYRQLAKLKST 602 Query: 291 KLNTLSEAV-SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L V D ++ ++TGR S QN+P + Sbjct: 603 YVEGLLTVVHDQDSKIHTRF-LQTLTQTGRLSSVDPNLQNIPMRT--------------- 646 Query: 350 GETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R+ + S ++V AD + IE RVLA + G+ +AF NGEDI Sbjct: 647 ---------EEGRQIRTAFVPSEPNWQIVGADYSQIELRVLAHMTGDKNMQRAFLNGEDI 697 Query: 409 YVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T F D V R K + + Y G A + + Sbjct: 698 HAETARAVFGLKDDAPVDALMRRTAKAVNFGIVYGISDFGLANNLGISRGEAKSFIDTYF 757 Query: 464 QNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTA 502 + + + +H ++ A+ + G+A Sbjct: 758 KEFPQIHAWMAKIKEIAHEQGFVETIAKRRRYLPEIGSKNFNLRSFAERTAMNSPIQGSA 817 Query: 503 CELVKKAWRA 512 +++K A Sbjct: 818 ADIIKIAMIK 827 Score = 41.6 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M ++L VHDE++ E P + L Sbjct: 813 IQGSAADIIKIAMIKVADALQEHHMQARMLLQVHDELIFEAPIDEIQELTELV 865 >gi|260903788|ref|ZP_05912110.1| DNA polymerase I [Brevibacterium linens BL2] Length = 888 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 82/529 (15%), Positives = 165/529 (31%), Gaps = 81/529 (15%) Query: 27 QAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLG 85 + + A + + + D E A S L LR +T++ + + K Sbjct: 341 HGDVRILAVSGAPDEAWVVDLAEAGEADVSKLSSALRSKTLILHS-----SKTQIKAWRS 395 Query: 86 IDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPY 145 + + + LA +P + ++ + ++ + Sbjct: 396 LGLDVDDVAGDTALAAYLLVPDQRSYELQQIALERAGIELSDAESDSGQL---------- 445 Query: 146 DCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS------DGERDLWLLDQTINDRGY 199 Q Q G +E L ++ + D E L + + G Sbjct: 446 -ALDLESDQTAQTHGHRAAALLEVHDILAAKIDEANMSQVYRDIELPLVPVLARMELAGI 504 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +D + L + ++ E + + + L+ LF + ++ Sbjct: 505 AVDEAGLSGLIDEFTKQANASAELAYEAIGHEV-NLGSPKQLQTVLFDELDMPKTKRTKT 563 Query: 260 TLKSILSHSNITQLAKDLILNRLASSGSAILKLN----TLSEAVSSDGRLRGTLQFYGAS 315 + + + + + KL L + V+ DGR+ T Q A+ Sbjct: 564 GYTTDAEALAELFIKTEHPFLQHLLAYRDSTKLKQTVVGLLKTVAEDGRIHTTYQQTVAA 623 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN--- 372 TGR S QN+P + S +R IA Sbjct: 624 -TGRLSSLDPNLQNIPVRTES------------------------GRRIREIFIADPHVD 658 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 +L+ AD + IE R++A ++G+ I+AF +GED++ +K F ID+V R+ Sbjct: 659 DARLLTADYSQIEMRIMAHLSGDAALIQAFKDGEDLHSYVGSKVFGVGIDEVDSAMRSKV 718 Query: 433 KVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAESH------- 481 K M L Y A + ++Q+ + + + D ++ Sbjct: 719 KAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVKDYLDEIVEQARANGYTET 778 Query: 482 --------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 ++D A+ + G+A +++K A Sbjct: 779 IMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIAMLKVSDR 827 Score = 41.3 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 8/164 (4%) Query: 497 KLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 K+ G + V A R+K + + L L+ G A+ + K Sbjct: 701 KVFGVGIDEVDSAMRSKVKAMSYGLVYGLSAYGLSRQLAIGVDEAKNLMEQYFERFGAVK 760 Query: 556 RDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + ++ +R Y++ + G YL S + R + N +Q + DI+ Sbjct: 761 DYLDEIVEQARANGYTETIMGRRRYLPALHSDRRQLRDMAERAALNAPIQGSAADIMKIA 820 Query: 614 MKNATKNGYD----IVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652 M + D ++L VHDEI+ + SV + M Sbjct: 821 MLKVSDRLGDHKSTVLLQVHDEIIVDVHPEEIDSVTQIVTEEMG 864 >gi|125974156|ref|YP_001038066.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] gi|125714381|gb|ABN52873.1| DNA-directed DNA polymerase [Clostridium thermocellum ATCC 27405] Length = 640 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 123/708 (17%), Positives = 237/708 (33%), Gaps = 155/708 (21%) Query: 7 DIETRSPQPLPKV--GVWAYAEQAVITLCAYAWDDEPVKLWDR--------TEQSAMPSD 56 D ET SP+ + A +A IT +++ + Q+A+ Sbjct: 25 DFET-SPRDKWRNDKSAALDAHKADITGISFSVSEGTAIYVPLKHRSGRNAENQAAIWDY 83 Query: 57 LLQYLRDETVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTNG------LPSSL 109 L + V+ VAHN FE + + + + P I S L + S L Sbjct: 84 LKLLFESKDVIKVAHNLAFESMFLYARGIVLQKPCYDTIAASQLTLKSKWEFRSLADSGL 143 Query: 110 KNACLALNFSE--HLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYCKRD 166 K AL +E + + EG+ + Y C +++ + + +F ++ R Sbjct: 144 KTLAPALCKAEMTEFSTVTEGR-FFDELNPQDEKTVRYACADSDYTLRLYHVFNQWFDRF 202 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 + R + + + E + + G +D +LK Q A++ + ++I Sbjct: 203 LPKHRTI------VEEVESPTSVYVGIMKYNGILVDKSAMLKKQAEAAEKIVSIRKEIAG 256 Query: 227 LTDG-IIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI----------TQLAK 275 + I ++ T A + YLF+ G+ ++ + ++ + I +L + Sbjct: 257 IIGNVEIGANASTSAFKKYLFVDLGLPVMKTTAKHQEAADDETMILLKEWCATNRPELVR 316 Query: 276 --DLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 +L+ ++ + D GR+ L G + TGR++ QN P+ Sbjct: 317 LFELVQEYRKWGKLKSTYIDGYLRFIDEDTGRIHPDLMPLG-TETGRFASRNPNMQNCPQ 375 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 ++ DP+G VR IIA GK L+ D + IE RV A+ Sbjct: 376 KD-------------------NDPIG-----VRKFIIAPAGKVLLSLDFSQIELRVGAFY 411 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------VSKEQRAIGKVMELALGYQGGA 445 + ++ + G DI+ T + + P ++ KE+R I K + Y Sbjct: 412 CRDKRMLETYRTGGDIHAQTTSVIYRIPFEEAADKNAPHYKERRTIAKNCNFGVFYGLFP 471 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 + + P A CE Sbjct: 472 TGLQRTLK------------------------------FKAGINPTLA--------ECET 493 Query: 506 VKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + ++ + G+ + W+D + R + +R + Sbjct: 494 IIQNLKSGYPGLAK-WQD-------------EVKKRAAVSCYSETWLGRRRYL------- 532 Query: 566 RRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNA-----TK 619 L +S + +++ + N +Q + DIL + Sbjct: 533 --------------LGIRSSDWGK-KSFAERCALNTPIQGTAADILKLACGRIISGLPER 577 Query: 620 NGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPSWAKGLPLKAE 666 +L +HDE+V E P+ +V + M P A +P+ AE Sbjct: 578 LWLKPMLQIHDELVFELPEDKVDEAVVFIKECMETQPFPAFDVPIVAE 625 >gi|315504696|ref|YP_004083583.1| DNA polymerase i [Micromonospora sp. L5] gi|315411315|gb|ADU09432.1| DNA polymerase I [Micromonospora sp. L5] Length = 909 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 71/409 (17%), Positives = 138/409 (33%), Gaps = 68/409 (16%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D E +R+ + ++ E L + T+ G D D + +L+ A E K + Sbjct: 492 DAELSRDGEQSARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAY 551 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLI 278 ++ + L+ LF G+ + L+ + + + L L Sbjct: 552 EVVGREF-NLGSPKQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLR 610 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 +A S + + L ++VS DGR+ T A+ TGR S QN+P + Sbjct: 611 HRDVAKLKSTV---DGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT---- 662 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDW 397 +R + G + L+ AD + IE R++A ++ +D Sbjct: 663 --------------------EEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDA 702 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+AF +G D + T + F + V+ +QR K M L Y G ++ A Sbjct: 703 LIEAFNSGHDFHAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQQLGISAE 762 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492 ++ + + A + + ++ Sbjct: 763 EARGLMENYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERM 822 Query: 493 AVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEG 535 A+ + G+A +++K A ++ + + V G Sbjct: 823 ALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPG 871 >gi|171743097|ref|ZP_02918904.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283455894|ref|YP_003360458.1| DNA polymerase I [Bifidobacterium dentium Bd1] gi|171278711|gb|EDT46372.1| hypothetical protein BIFDEN_02224 [Bifidobacterium dentium ATCC 27678] gi|283102528|gb|ADB09634.1| DNA polymerase I [Bifidobacterium dentium Bd1] Length = 949 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 71/409 (17%), Positives = 151/409 (36%), Gaps = 73/409 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E + + + G ++D+ + ++++ A + ++ E + + + + Sbjct: 539 LKSIELPVSKVLYGMEHAGAQVDMIRLTEMRDQFAADARQAQEIAWESAGERV-NLQSPK 597 Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+++ HS A + L + LK Sbjct: 598 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLYEHSLDNDRANQFLGALLRHRETNKLK 657 Query: 292 --LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + TL +A + DGR+ T + A+ TGR S QN+P + Sbjct: 658 QIVQTLIDATNPRDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 701 Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 A +RS + G + L+ +D + +E R++A ++G++ I+AF +G D Sbjct: 702 ---------NAAGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDEALIEAFRSGRD 752 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+++++ +QR+ K M L Y G A+ K Q+ Sbjct: 753 FHKYVASLVYGIPVEEITSDQRSHVKAMSYGLAYGLSTYGLAQQLKISPKEAESLRNQYF 812 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + +S + ++D A+ + G+A Sbjct: 813 ATFGKVHEYLESLVSTAREKGYTETIYGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSA 872 Query: 503 CELVKKAWRAK----------HQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A E + R Sbjct: 873 ADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVR 921 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 9/71 (12%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654 +Q + DI+ M I+L +HDE+V E P + + + M Sbjct: 868 IQGSAADIMKIAMIRAADSLRDACLKSRIILQIHDELVVEIAPGEAEQATALVRNAMEHA 927 Query: 655 PSWAKGLPLKA 665 + A +PL A Sbjct: 928 VTMA--VPLDA 936 >gi|291450771|ref|ZP_06590161.1| DNA polymerase I [Streptomyces albus J1074] gi|291353720|gb|EFE80622.1| DNA polymerase I [Streptomyces albus J1074] Length = 908 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 87/524 (16%), Positives = 165/524 (31%), Gaps = 79/524 (15%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + HN+ + + + + LA P A AL+ Sbjct: 395 LAAADRPKILHNAK---GVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEY 451 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 ++ A ++ + + FGE ++ V AT Sbjct: 452 LGRELAPATADGQLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQ-VGAT-------G 503 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 L+D E +L ++ G D D + ++ A ++ ++ + Sbjct: 504 LLADVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAHDAVGREF-NLGSP 562 Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NT 294 L+ LF + ++ + D L + KL Sbjct: 563 KQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVTVEG 622 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +++++DGR+ T A+ TGR S QN+P + Sbjct: 623 LIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-------------------- 661 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T Sbjct: 662 ----DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVA 717 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 ++ F D V E R K M L Y G ++ A + + + Sbjct: 718 SQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYFERFGGV 777 Query: 470 STFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKK 508 + E+ + ++ A+ + GTA ++VK Sbjct: 778 RDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRRETAERMALNAPIQGTAADIVKI 837 Query: 509 AW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A R + +LQ+ ++ A +E RR Sbjct: 838 AMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERVEEIVRR 881 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 85/279 (30%), Gaps = 33/279 (11%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK+ A I+ T + P + + G+ + G + Sbjct: 621 EGLIKSIATDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDEGRAIRRGFVVGEGYESL 680 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G + V Sbjct: 681 MT-ADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVASQ---------VFGVERDAVDA 730 Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + L L+ + AR + + + + + +R Sbjct: 731 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYFERFGGVRDYLRHAVDEARA 790 Query: 568 LVYSDVKGDCSYL----NTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN-- 620 Y++ N+ Q R T ++ N +Q + DI+ M + Sbjct: 791 TGYTETMLGRRRYLPDLNSDNRQ--RRET-AERMALNAPIQGTAADIVKIAMLRVHRALT 847 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 ++L VHDEIV E V + M Sbjct: 848 EARLSSRMLLQVHDEIVLEIAPGERERVEEIVRREMADA 886 >gi|291007053|ref|ZP_06565026.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 894 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 72/397 (18%), Positives = 138/397 (34%), Gaps = 72/397 (18%) Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G +D D + L A K+ +D + I + L++ LF Sbjct: 502 QVLSELEAAGIAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDE 560 Query: 249 TGIDLVDMSEG----------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 G+ ++ +L H + + + RL ++ ++ L ++ Sbjct: 561 LGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT------VDGLVKS 614 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DGR+ TL A+ TGR S QN+P + Sbjct: 615 IADDGRIHTTLNQTIAA-TGRLSSTEPNLQNIPIRT------------------------ 649 Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + G +L+ AD + IE R++A ++G++ I+AF GED++ ++AF Sbjct: 650 EEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAF 709 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 PID+V E R K M L Y G A+ + ++ + S + Sbjct: 710 GVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAREQMEAYFARFGSVRDYL 769 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 S + +D A+ + G+A +++K A Sbjct: 770 RDVVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALNAPIQGSAADIIKVAMLD 829 Query: 513 KH----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 H ++ + + V +G R+ Sbjct: 830 VHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVR 866 >gi|239978887|ref|ZP_04701411.1| DNA polymerase I [Streptomyces albus J1074] Length = 897 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 87/524 (16%), Positives = 165/524 (31%), Gaps = 79/524 (15%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + HN+ + + + + LA P A AL+ Sbjct: 384 LAAADRPKILHNAK---GVMRVFAEHGWRVEGVTMDTALAAYLVKPGRRSFALDALSLEY 440 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 ++ A ++ + + FGE ++ V AT Sbjct: 441 LGRELAPATADGQLTLGADDEAEAHALMVQARTVLDLGAAFGERLEQ-VGAT-------G 492 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 L+D E +L ++ G D D + ++ A ++ ++ + Sbjct: 493 LLADVELPTSILLASLERAGIAADRDHLEAMERQFAAAVQQAVKEAHDAVGREF-NLGSP 551 Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NT 294 L+ LF + ++ + D L + KL Sbjct: 552 KQLQEVLFGELNLPKTKKTKTGYTTDADALAWLAAQTDHELPVIMLRHREQAKLRVTVEG 611 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L +++++DGR+ T A+ TGR S QN+P + Sbjct: 612 LIKSIATDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-------------------- 650 Query: 355 DPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T Sbjct: 651 ----DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVA 706 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 ++ F D V E R K M L Y G ++ A + + + Sbjct: 707 SQVFGVERDAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYFERFGGV 766 Query: 470 STFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKK 508 + E+ + ++ A+ + GTA ++VK Sbjct: 767 RDYLRHAVDEARATGYTETMLGRRRYLPDLNSDNRQRRETAERMALNAPIQGTAADIVKI 826 Query: 509 AW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A R + +LQ+ ++ A +E RR Sbjct: 827 AMLRVHRALTEARLSSRMLLQVHDEIVLEIAPGERERVEEIVRR 870 Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 44/279 (15%), Positives = 85/279 (30%), Gaps = 33/279 (11%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK+ A I+ T + P + + G+ + G + Sbjct: 610 EGLIKSIATDGRIHTTFNQTVAATGRLSSTEPNLQNIPVRTDEGRAIRRGFVVGEGYESL 669 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G + V Sbjct: 670 MT-ADYSQIELRVMAHLSQDEGLIEAFTSGEDLHTTVASQ---------VFGVERDAVDA 719 Query: 509 AWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + L L+ + AR + + + + + +R Sbjct: 720 EMRRKIKAMSYGLAYGLSAFGLSQQLNIDAGEARALMDTYFERFGGVRDYLRHAVDEARA 779 Query: 568 LVYSDVKGDCSYL----NTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN-- 620 Y++ N+ Q R T ++ N +Q + DI+ M + Sbjct: 780 TGYTETMLGRRRYLPDLNSDNRQ--RRET-AERMALNAPIQGTAADIVKIAMLRVHRALT 836 Query: 621 ----GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 ++L VHDEIV E V + M Sbjct: 837 EARLSSRMLLQVHDEIVLEIAPGERERVEEIVRREMADA 875 >gi|222153812|ref|YP_002562989.1| DNA polymerase I [Streptococcus uberis 0140J] gi|222114625|emb|CAR43640.1| DNA polymerase I [Streptococcus uberis 0140J] Length = 881 Score = 211 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 64/414 (15%), Positives = 128/414 (30%), Gaps = 68/414 (16%) Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 +L D E L + + G +++ + ++++ E +L ++I L Sbjct: 471 HDQLALFEDIEMPLANVLAKMEITGIKVNKETLVEMAEQNKVIIDRLTQEIYDLAGEEF- 529 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN 293 + L LF + + + + + +LA + I KL Sbjct: 530 NINSPKQLGSILFEKMQLPIEMTKKTKTGYSTAVDVLERLAPIAPVVAKILDYRQITKLQ 589 Query: 294 T-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + + DG++ ++TGR S QN+P + Sbjct: 590 STYLIGLQDYIMEDGKIHTRYV-QDLTQTGRLSSIDPNLQNIPIR--------------- 633 Query: 349 RGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R AS L+ +D + IE RVLA I+G+ I AF D Sbjct: 634 ---------MEQGRLIRKAFTASSEDALLLSSDYSQIELRVLAHISGDQHLITAFNEDAD 684 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 I+ +T + F ++ V+ R K + + Y G + + + Sbjct: 685 IHTSTAMRVFAIDKEEDVTANDRRNAKAVNFGIVYGISDFGLSNNLGISRQKAKEYINTY 744 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + D S + ++ A+ + G+ Sbjct: 745 FDRYPGIKDYMDSIVREAKDKGYVETLFKRRRELPDINSRNFNVRSFAERTAINSPIQGS 804 Query: 502 ACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A R K + +LQ+ ++ E + Sbjct: 805 AADILKIAMINLDKALEEGRFKTKMLLQVHDEIVLEVPKDELEKVKQLVKETME 858 >gi|134101936|ref|YP_001107597.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] gi|133914559|emb|CAM04672.1| DNA polymerase I [Saccharopolyspora erythraea NRRL 2338] Length = 895 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 72/397 (18%), Positives = 138/397 (34%), Gaps = 72/397 (18%) Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G +D D + L A K+ +D + I + L++ LF Sbjct: 503 QVLSELEAAGIAVDADQLAGLGAHFAARVKQAAQDAYGVIGKEI-NLGSPKQLQVVLFDE 561 Query: 249 TGIDLVDMSEG----------TLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 G+ ++ +L H + + + RL ++ ++ L ++ Sbjct: 562 LGMPKTKRTKTGYTTDAEALQSLYEKTEHPFLQHMLEHRDATRLKTT------VDGLVKS 615 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 ++ DGR+ TL A+ TGR S QN+P + Sbjct: 616 IADDGRIHTTLNQTIAA-TGRLSSTEPNLQNIPIRT------------------------ 650 Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R + G +L+ AD + IE R++A ++G++ I+AF GED++ ++AF Sbjct: 651 EEGRRIREVFVVGEGYSELMTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVASRAF 710 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 PID+V E R K M L Y G A+ + ++ + S + Sbjct: 711 GVPIDEVDHELRRRVKAMSYGLAYGLSAFGLAQQLRISTEDAREQMEAYFARFGSVRDYL 770 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 S + +D A+ + G+A +++K A Sbjct: 771 RDVVDQARKDGYTSTILGRRRYLPDLNSDNRQRRDMAERMALNAPIQGSAADIIKVAMLD 830 Query: 513 KH----QGVLQLWKDLTEGFACVVQEGGSISARRVAN 545 H ++ + + V +G R+ Sbjct: 831 VHEALRPLRSRMLLQVHDELIIEVADGEREEVERLVR 867 >gi|50954806|ref|YP_062094.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951288|gb|AAT88989.1| DNA polymerase I [Leifsonia xyli subsp. xyli str. CTCB07] Length = 895 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 67/385 (17%), Positives = 130/385 (33%), Gaps = 66/385 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E L + + G ID + +L++ + + L I + Sbjct: 492 LDEIELPLVAVLAEMELNGVAIDAVALTRLRDRLTGKASDLAARAYAEIGHEI-NLGSPK 550 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L+ LF G+ ++ + + Q L KL TL Sbjct: 551 QLQQVLFEELGMPKTRSTKTGYSTDAASLADLQEKSPHPFLGLLLQHRDATKLKQIVETL 610 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +V+ DGR+ T G + TGR S QN+P + Sbjct: 611 ERSVTGDGRIHTTYDQTG-TSTGRISSNDPNLQNIPIRT--------------------- 648 Query: 356 PLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +RS + + L+ AD + IE R++A ++ + I+AF GED++ + Sbjct: 649 ---EEGREIRSSFVSGGEDETLLTADYSQIEMRIMAHLSDDPGLIEAFNAGEDLHRFVGS 705 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F P ++V+ R K M L Y G +K + S + + + + Sbjct: 706 RVFGVPPEEVTPLMRTKVKAMSYGLAYGLSAFGLSKQLRIETSEARELMNGYFERFGAVR 765 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + ++ + +++ A+ + G+A +++K A Sbjct: 766 DYLRNVVEQARLDGFTETIFGRRRPFADLTSTNRVLRENAERQALNAPIQGSAADIMKIA 825 Query: 510 W----------RAKHQGVLQLWKDL 524 R + +LQ+ +L Sbjct: 826 MLGIAGDMSDQRLGSRMLLQVHDEL 850 Score = 41.6 bits (96), Expect = 0.38, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + G ++L VHDE++ E ++ T+ Sbjct: 814 IQGSAADIMKIAMLGIAGDMSDQRLGSRMLLQVHDELIFEVAPGEGDALETIVR 867 >gi|302868834|ref|YP_003837471.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] gi|302571693|gb|ADL47895.1| DNA polymerase I [Micromonospora aurantiaca ATCC 27029] Length = 899 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 71/409 (17%), Positives = 138/409 (33%), Gaps = 68/409 (16%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D E +R+ + ++ E L + T+ G D D + +L+ A E K + Sbjct: 482 DAELSRDGEQSARLMAGVELPLMRVLATMERTGIAADTDYLSELEAHFAAEVKAAAQGAY 541 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDLI 278 ++ + L+ LF G+ + L+ + + + L L Sbjct: 542 EVVGREF-NLGSPKQLQEILFTELGLPKTKRIKTGYTTDADALQWLFAQTEHPLLHHLLR 600 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 +A S + + L ++VS DGR+ T A+ TGR S QN+P + Sbjct: 601 HRDVAKLKSTV---DGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT---- 652 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDW 397 +R + G + L+ AD + IE R++A ++ +D Sbjct: 653 --------------------EEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSSDDA 692 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+AF +G D + T + F + V+ +QR K M L Y G ++ A Sbjct: 693 LIEAFNSGHDFHAATASSVFTVEVGDVTADQRRKIKAMNYGLAYGLSAFGLSQQLGISAE 752 Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEF 492 ++ + + A + + ++ Sbjct: 753 EARGLMENYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERM 812 Query: 493 AVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEG 535 A+ + G+A +++K A ++ + + V G Sbjct: 813 ALNAPIQGSAADIIKVAMLHVDSALRDAGLRSRMLLQVHDELVFEVAPG 861 >gi|320011379|gb|ADW06229.1| DNA polymerase I [Streptomyces flavogriseus ATCC 33331] Length = 903 Score = 211 bits (537), Expect = 3e-52, Method: Composition-based stats. Identities = 90/541 (16%), Positives = 163/541 (30%), Gaps = 81/541 (14%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D E + L L D V HN+ + + + + LA Sbjct: 373 DPAELAEADEQALAAWLADPGQPKVLHNAKNALRVLPEQGW---RLEGISMDTALAAYLV 429 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANH---VQAWQLFGE 161 P A AL ++ A + G+ D D A + F Sbjct: 430 KPGRRSFALDALAVEYLGRELAPAPASDGQLAFGADDRAEADALMAQARAVLDLGDAFTT 489 Query: 162 YCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLD 221 K V AT L+ D E ++ + G D + +++ A ++ Sbjct: 490 RLKE-VGATELLY-------DMELPTSIMLARLERHGIAADRAHLESMEQQFAGAVQQAV 541 Query: 222 EDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNR 281 ++ + L+ LF + ++ + + L Sbjct: 542 KEAHAAVGREF-NLGSPKQLQEVLFGELALPKTKKTKTGYTTDADALAWLAAQTEHELPV 600 Query: 282 LASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE 337 + KL L + +++DGR+ T A+ TGR S QN+P + Sbjct: 601 IMLRHREQAKLRVTVEGLIKTIAADGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT--- 656 Query: 338 EILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGED 396 +R + G + L+ AD + IE RV+A ++ + Sbjct: 657 ---------------------DEGRAIRRGFVVGEGFETLMTADYSQIELRVMAHLSEDA 695 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMA 452 I+AF +GED++ T ++ F V E R K M L Y G ++ A Sbjct: 696 GLIEAFTSGEDLHTTVASQVFGVEKSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIEA 755 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPE 491 + + + E+ + ++ Sbjct: 756 GEARGLMDTYFLRFGGVRDYLHRVVEEARSTGYTETILGRRRYLPDLNSDNRQRREAAER 815 Query: 492 FAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A+ + GTA ++VK A + +LQ+ ++ A +E R Sbjct: 816 MALNAPIQGTAADIVKVAMLKVDRALTEAELTSRMLLQVHDEIVLEIAKGEREQVEEILR 875 Query: 542 R 542 R Sbjct: 876 R 876 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 48/278 (17%), Positives = 87/278 (31%), Gaps = 27/278 (9%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK A I+ T + P + + G+ + G + Sbjct: 616 EGLIKTIAADGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFETL 675 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G V Sbjct: 676 MT-ADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVASQ---------VFGVEKSAVDA 725 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + F Q AR + + L + +H V+ +R Sbjct: 726 EMRRKIKAMSYGLAYGLSAFGLSQQLNIEAGEARGLMDTYFLRFGGVRDYLHRVVEEARS 785 Query: 568 LVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620 Y++ + G YL S + R ++ N +Q + DI+ M + Sbjct: 786 TGYTETILGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVAMLKVDRALTEAE 845 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKNPS 656 ++L VHDEIV E V + M+ Sbjct: 846 LTSRMLLQVHDEIVLEIAKGEREQVEEILRREMSTAVE 883 >gi|307721272|ref|YP_003892412.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] gi|306979365|gb|ADN09400.1| DNA polymerase I [Sulfurimonas autotrophica DSM 16294] Length = 907 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 81/532 (15%), Positives = 170/532 (31%), Gaps = 90/532 (16%) Query: 33 CAYAWDDEPVKLWDRTEQ---------SAMPSDLLQYLRDETVMCVAHNSLFERILFKKT 83 +++++DE + ++ + + V V HN F+ + Sbjct: 358 FSFSFNDEEAYYVPFGHFYLGVADQVSKDVAKQAMRRIFNSKV--VGHNIKFDLHFVTRF 415 Query: 84 LGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT---KMEEGKALIARFCKGSI 140 L + + +LA S+L L+ H K K F + Sbjct: 416 LEEKDLPV-YCDSMILAWLINPESALSLDKLSDKLLGHEMVHFKDTVKKGEN--FSTVEL 472 Query: 141 DSP-PYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 D Y A + +AT + + E + + G Sbjct: 473 DDACVYAAEDAFITRKLYKLFLKKLELQDATHLIEEA----KTVEIPFMHTLLKMEEEGI 528 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE- 258 +D + K + + + L + I +L + T L LF G+ + ++ Sbjct: 529 EVDTGFLEKFLVEVKETLEYLTKSIYELAGSEF-NINSTQQLGNILFEKLGLPVGKKTKT 587 Query: 259 --GTLKSIL-----SHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD--GRLRGTL 309 T + +L H I +L + +++L S+ ++ L + + D R+ + Sbjct: 588 GYSTNEKVLSSLKDKHPIIPKLLEYREVHKLYSTY-----IDPLLKLANEDEQHRIHTSF 642 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 G + TGR S QN+P + +R + Sbjct: 643 VQTG-TATGRLSSKNPNLQNIPTRT------------------------PLGAKIRRGFV 677 Query: 370 ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 A GKK + D + +E R+LA + + + AF + +DI++ T F ++ + +R Sbjct: 678 AGEGKKFIGIDYSQMELRLLAHFSQDPVLVNAFMHDKDIHLQTAIVLFG---EEEAAHKR 734 Query: 430 AIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTF------------- 472 I K + L Y G K ++++ ++ + + Sbjct: 735 NIAKTVNFGLLYGMGPKKLSDTLGITTKEAKEIIEKYFESFHTVKAYFRSIVESSKEKGY 794 Query: 473 -------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + E+ + Y +V G+ +++K + H + Sbjct: 795 VETLLGRRRYFDYENATPMYRAAYERESVNSVFQGSVSDVIKLSMNKIHTII 846 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 24/142 (16%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTYGGKL 597 A+ + K ++ SS+ Y + G Y + + M Y + Sbjct: 763 EAKEIIEKYFESFHTVKAYFRSIVESSKEKGYVETLLGRRRYFDYENATPMYRAAYERES 822 Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSV------- 644 ++ Q D++ M K ++L +HDE++ E + + Sbjct: 823 VNSVFQGSVSDVIKLSMNKIHTIINEEKLQAKMLLQIHDELIFEVDEKVADELGNRFRDI 882 Query: 645 -GTLCSLMTKNPSWAKGLPLKA 665 + L +PLKA Sbjct: 883 MDHIVEL---------NIPLKA 895 >gi|51473944|ref|YP_067701.1| DNA polymerase I [Rickettsia typhi str. Wilmington] gi|81550503|sp|Q9RLA0|DPO1_RICTY RecName: Full=DNA polymerase I; Short=POL I gi|5912311|emb|CAB56108.1| DNA polymerase I [Rickettsia typhi] gi|51460256|gb|AAU04219.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 872 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 71/408 (17%), Positives = 142/408 (34%), Gaps = 64/408 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + + + + G ++D + + +L + E K++E+I L+ + Q L Sbjct: 472 EIDLPTCFILDKMEKIGIKVDANYLHQLSDEFGTEILKIEEEIFALSGTKFNIASQ-KQL 530 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295 LF + + T + +L++D L+L + ++L Sbjct: 531 SEILFKKMQLPSGNTLAKTSSYSTKAGILKKLSEDGYHIATLLLRWRQLTKLKNTYTDSL 590 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + +++ + T ++ TGR S QN+P + Sbjct: 591 PKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNIPTRSSD------------------- 631 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 + +R IA +G KL+ AD + IE R+L+ IA D +AF N EDI+ T + Sbjct: 632 -----GNKIRQAFIAEDGYKLISADYSQIELRILSHIANVDVLKQAFINKEDIHTQTACQ 686 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 FN +++ E R K + + Y G AK ++Q+ K Sbjct: 687 IFNLQKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNGTAAEYIKQYFAEYKGMQE 746 Query: 472 FEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + +A + H ++ A+ + GT+ +++K A Sbjct: 747 YMVQTKAYANRNGYVTNFFGRKCFIPLIHDKKLKQFAERAAINAPIQGTSADIIKIAMIK 806 Query: 513 KHQG----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 Q +LQ+ +L + E +++ + Sbjct: 807 LAQEIEKRKLKTRLILQIHDELLFEVPEIELELVIPIIKKIMEYSTNI 854 >gi|259502604|ref|ZP_05745506.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] gi|259169419|gb|EEW53914.1| prophage LambdaSa04 DNA-directed DNA polymerase [Lactobacillus antri DSM 16041] Length = 169 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 20/176 (11%) Query: 1 MSKLFIDIETRSPQPLPKVGVWAYAE--QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL 58 M ++ IDIET S L + GV+ YA+ + L Y+ D PVK+ D T+ +P ++ Sbjct: 1 MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYSTDFGPVKVVDLTQGEKIPPQII 60 Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 + L + ++ A N+ FER+ + +G + W C+ V + T GLP SL++ L Sbjct: 61 EALDNPNIIKSAFNAQFERVCLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDVGSVLGL 120 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN----------HVQAWQLFGEYCK 164 K+ GK L+ FC P T+AN WQ F +Y + Sbjct: 121 PRQ--KITAGKELVRYFCT------PCKPTKANQNRTRNFPYHAPDKWQQFKQYNQ 168 >gi|294812030|ref|ZP_06770673.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|294324629|gb|EFG06272.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 913 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 85/547 (15%), Positives = 157/547 (28%), Gaps = 92/547 (16%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D T + D V HN+ +F + + LA Sbjct: 384 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEHGW---RVDGITMDTALAAYLV 440 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P A AL+ L + D T + + Sbjct: 441 KPGRRSFALDALSVE----------YLHRELVPAAADGQLAFGTDEHAEADALMAQARAV 490 Query: 165 RDV----EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 D+ A E L D E L + G D + ++ L A ++ Sbjct: 491 LDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQA 550 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNI 270 ++ + L+ F + ++ L H Sbjct: 551 VKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELP 609 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + + RL S+ + L + V++DGR+ T A+ TGR S QN+ Sbjct: 610 VIMLRHREQARLRST------VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNV 662 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389 P + +R + G + L+ AD + IE RV+ Sbjct: 663 PVRT------------------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVM 698 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++ ++ I+AF +GED++ T ++ F +V E R K M L Y G + Sbjct: 699 AHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLS 758 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484 + A + + + + E+ + Sbjct: 759 QQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQ 818 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSI 538 ++ A+ + GTA ++VK A + + +L + + + G Sbjct: 819 RREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERD 878 Query: 539 SARRVAN 545 + Sbjct: 879 EVETIVR 885 >gi|326382644|ref|ZP_08204335.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] gi|326198763|gb|EGD55946.1| DNA polymerase I [Gordonia neofelifaecis NRRL B-59395] Length = 897 Score = 211 bits (536), Expect = 4e-52, Method: Composition-based stats. Identities = 110/633 (17%), Positives = 195/633 (30%), Gaps = 129/633 (20%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 ++ L D + P + + + A ++L G + Sbjct: 359 EDDAALADWLADESRPKAVHE-------VKWALHAL---------RGRGWTLTGVTSDTA 402 Query: 99 LARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 LA P + LAL + K E+G + D+ + A Sbjct: 403 LAAYLVRPGQRTFNLDDLALRYLRRELKAEDGAGDDGQLSLLDDDADAQRAADQLMLSAQ 462 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + D E R L L + E L + + G +D+D + L+ AQ Sbjct: 463 AVAELADTLDTELERIDSSAL--LQEMELPLSFVLADLEAAGIAVDVDHLDSLEGQFAQR 520 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD 276 + E ++ + + L+ LF + ++ + + Sbjct: 521 VRDAAESAYEVIGEQV-NLGSPKQLQAILFDKLDMPKTKKTKTGYTTDADALTSLYEKTE 579 Query: 277 LILNRLASSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP- 331 + +L L + V+ D R+ T A+ TGR S QN+P Sbjct: 580 HPFLKHLLEHRDATRLRVTVEGLQKTVADDQRIHTTFNQTVAA-TGRLSSTDPNLQNIPV 638 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 R E +I + A P+ + S + + L+ AD + IE R++A Sbjct: 639 RTEAGRQIRHAFVVA-------PGPVAVGSGNI-------EFESLMTADYSQIEMRIMAH 684 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTM 451 ++ ++ I+AF GED++ ++AF P+D+V + R+ K M L Y A + Sbjct: 685 LSEDEGLIEAFNTGEDLHNFVGSRAFGVPVDQVDPQMRSRVKAMSYGLAYGLSA---YGL 741 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-VKDKLIGTACELVKKAW 510 A+ G+ ++ Q M+ + F V+D L E + + Sbjct: 742 AAQLGISREEAKQQ-------------------MEAYFDRFGGVRDYLHRVVEEARRNEY 782 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY 570 A G + DL D S+ R+ Sbjct: 783 TATLFGRRRYLPDL------------------------------NSDNFQRRQSAERMAL 812 Query: 571 SDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDI 624 + +Q + DI+ M N K + Sbjct: 813 NAP----------------------------IQGTAADIIKVAMINVQKRLRTEQLSSRM 844 Query: 625 VLTVHDEIVSETPDTPYFSVGTLC-SLMTKNPS 656 +L VHDE+V E +V L M Sbjct: 845 LLQVHDELVIEVATGEQAAVEALVREEMGGAID 877 >gi|254391547|ref|ZP_05006747.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] gi|197705234|gb|EDY51046.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 905 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 85/547 (15%), Positives = 157/547 (28%), Gaps = 92/547 (16%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D T + D V HN+ +F + + LA Sbjct: 376 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEHGW---RVDGITMDTALAAYLV 432 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P A AL+ L + D T + + Sbjct: 433 KPGRRSFALDALSVE----------YLHRELVPAAADGQLAFGTDEHAEADALMAQARAV 482 Query: 165 RDV----EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 D+ A E L D E L + G D + ++ L A ++ Sbjct: 483 LDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQA 542 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNI 270 ++ + L+ F + ++ L H Sbjct: 543 VKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELP 601 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + + RL S+ + L + V++DGR+ T A+ TGR S QN+ Sbjct: 602 VIMLRHREQARLRST------VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNV 654 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389 P + +R + G + L+ AD + IE RV+ Sbjct: 655 PVRT------------------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVM 690 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++ ++ I+AF +GED++ T ++ F +V E R K M L Y G + Sbjct: 691 AHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLS 750 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484 + A + + + + E+ + Sbjct: 751 QQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQ 810 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSI 538 ++ A+ + GTA ++VK A + + +L + + + G Sbjct: 811 RREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERD 870 Query: 539 SARRVAN 545 + Sbjct: 871 EVETIVR 877 >gi|226320515|ref|ZP_03796080.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] gi|226234079|gb|EEH32795.1| DNA polymerase I family protein [Borrelia burgdorferi 29805] Length = 908 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 96/620 (15%), Positives = 198/620 (31%), Gaps = 117/620 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGCYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 + LA + H K E+ F S++ Y A+ + + LF + K Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNLFTKKLK 500 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D RL + + E + + + G +D + + + + + +E + ++ +I Sbjct: 501 EDK------LDRL--MHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277 +K + GI + + LF + L + + I H +I L K Sbjct: 553 IK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + +L S+ + + L E ++ RL + + TGR + QN+P Sbjct: 612 QIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQNIP----- 660 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R NG + AD + IE +LA ++ ++ Sbjct: 661 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 701 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 IKAF N +DI+ T +K F +++ R I K + + Y+ AK Sbjct: 702 VLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITK 761 Query: 453 SHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPE 491 + + + F ++ S++ + Sbjct: 762 EEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNYLERSAAER 821 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A+ + G+A +++K A ++++ + + + + + P Sbjct: 822 IAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEMLIESPIEEE 873 Query: 552 RRHKRDVHIVLPSSRRLVYS 571 K+ + I++ ++ L Sbjct: 874 NEVKKILKIMMETAYTLNLP 893 >gi|148284572|ref|YP_001248662.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] gi|146740011|emb|CAM80088.1| DNA polymerase I [Orientia tsutsugamushi str. Boryong] Length = 910 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 93/585 (15%), Positives = 190/585 (32%), Gaps = 104/585 (17%) Query: 33 CAYAWDDEPVKLWDRTEQ---------SAMP---SDLLQYLRDETVMCVAHNSLFERILF 80 ++ D + D T + P S +++ L D ++ + +N I Sbjct: 367 ITFSLDLHKLYFIDLTAITSKEQNRAIATNPWWKSSIIELLLDSSIQKITYNLKELLIFL 426 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIAR-FCKGS 139 L +I S I +L L + + L + E + + K + Sbjct: 427 LNFLRTEITSASCIDDIMLMHYI-LSAGKNDLSLNEIIQTYNKSYSEQYSENKVCWLKNT 485 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 D+ +LF K L + + + + + I + G Sbjct: 486 FDNLMS-----------ELFKN-------------KLLHCYYEIDLPICYILRNIENNGI 521 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG 259 +I++ L+ +L + + + L++ I K+ + L LF + + +S+ Sbjct: 522 KINVPLLKELSAQLKHKIELLEQQIYKICGQEFNIA-SPKQLGEILFDVLKLPHAKVSQK 580 Query: 260 TLKSILSHSNITQLAK------DLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFY 312 T + L++ DL+L + ++TL ++++ R+ TL Sbjct: 581 TKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRIHTTLLQT 640 Query: 313 GASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN 372 + + S QN+P + VRS +A Sbjct: 641 STTTSR-LSSHSPNLQNIPIRS------------------------EYGLKVRSAFVAPQ 675 Query: 373 GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIG 432 G K++ AD + IE R+L++ A + F GEDI+ +T A+ F D+V++E R Sbjct: 676 GSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTEEHRRKA 735 Query: 433 KVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------- 474 K + + Y G AK + + + Q S + D Sbjct: 736 KAINFGVIYGISAFGVAKQLNISNTEAAQYINHYFQEYPSIRQYMDETKKFAVENGYVKN 795 Query: 475 -------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------KHQGVLQL 520 S +L ++ A+ + TA ++ K A K+ + +L Sbjct: 796 MIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTASDIAKIAMIQYEKLIYSKYPAI-KL 854 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + + + +A + + + + L Sbjct: 855 LLQVHDELVFELPNELVDTACNLIKCTMENIPYFSFPLKVELKIG 899 >gi|291277587|ref|YP_003517359.1| DNA polymerase I [Helicobacter mustelae 12198] gi|290964781|emb|CBG40637.1| DNA polymerase I [Helicobacter mustelae 12198] Length = 904 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 83/491 (16%), Positives = 160/491 (32%), Gaps = 94/491 (19%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 V HN F+ ++ K + + + +LA L ++ + + K G Sbjct: 403 VGHNLKFDLMIAKANFNLTPKRE-IQDSMLLAY-------LLDSASMMGLDILMEKFF-G 453 Query: 129 KALIAR--FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS----- 181 K +IA K D RA EY D A L +RL Sbjct: 454 KKMIAYDEVVKKGKTFGDVDLERA---------SEYASEDAVACFCLQERLKEELQAKRC 504 Query: 182 --------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 D E + + +G +ID++ L+E +++ + +E+I Sbjct: 505 AHLLELAKDLEYPFIEVLADMEYQGIKIDVEWFEALKESLSEALSQKEEEIFAHAKQNF- 563 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL- 292 + L LF + + +G + +L + + I KL Sbjct: 564 NINSPKQLSRVLFDDLKLRGLRRVKGG--YSTDEKTLEELKDSHPIIPILMEYREIFKLK 621 Query: 293 ----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + + + + ++ + G + TGR S QN+P + + Sbjct: 622 NTYAEPILKLRTKENKIHTSFSQTGTT-TGRLSSRSPNLQNIPVRTEA------------ 668 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R IA GKKL+ D + IE R+LA + + + AF DI Sbjct: 669 ------------GKQIRRGFIADAGKKLISVDYSQIELRLLAHFSQDQELLDAFRKDLDI 716 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQ 464 ++ T F + +K +R I K + L Y G ++ K + + ++ Sbjct: 717 HLRTAQMVFG----EDAKNKRHIAKTINFGLIYGMGTRKLSQTLKISNTEAKEYIDRYFA 772 Query: 465 NVKSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + + F + + +M+ + + G+A + Sbjct: 773 SFPTVRQFLRTEEEQILRRGYAQTLLGHRRYFNFKGVGDFMRSNFLREGINAIFQGSAAD 832 Query: 505 LVKKAWRAKHQ 515 L+K + +Q Sbjct: 833 LMKLSMNKIYQ 843 >gi|229099047|ref|ZP_04229981.1| DNA polymerase I [Bacillus cereus Rock3-29] gi|228684275|gb|EEL38219.1| DNA polymerase I [Bacillus cereus Rock3-29] Length = 890 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 76/489 (15%), Positives = 160/489 (32%), Gaps = 86/489 (17%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 +L + + ++ + K GIDI + ++A L A Sbjct: 369 EAFKAWLANGEMRKRTFDAKRAIVALK-WKGIDIQGIDF--DLLIAAYL-----LDPADT 420 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 +F + KM+E A+ K + RA V ++ E+ R V ++ Sbjct: 421 DKDF-RTVAKMKETHAV-----KSDEEVYGKGAKRA--VPELEVVAEHVARKVHVLYDVK 472 Query: 175 KRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + ++ E L + + +G ++D + + + E +A K+++++I Sbjct: 473 QTFLEELKKNEQYELFTELELPLARVLADMEVKGVKVDTERLRNMGEELAGRLKEMEQEI 532 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDL-----IL 279 KL + L + LF + ++ ++ S + +L IL Sbjct: 533 YKLAGTEF-NINSPKQLGVILFENLNLPVIKKTKTG--YSTSADVLDKLMNHHEIIPNIL 589 Query: 280 NRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + + L + V D ++ ++TGR S QN+P + Sbjct: 590 HYRQLGKLNSTYIEGLLKVVHEDSSKIHTRFN-QVLTQTGRLSSTDPNLQNIPIR----- 643 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDW 397 +R + G + AD + IE RVLA IA + Sbjct: 644 -------------------LEEGRKIRQAFVPSEEGWIMYAADYSQIELRVLAHIANDKG 684 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 ++AF + DI+ T F D+V+ R K + + Y G ++ Sbjct: 685 LVEAFQHDMDIHTKTAMDVFGVGKDEVTSNMRRQAKAVNFGIVYGISDYGLSQNLGITRK 744 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 ++++ ++ + D + S + ++ Sbjct: 745 AAAEFIEKYLESFPGVQEYMDDIVKDAKQKGYVATLLNRRRYIPEITSRNFNLRSFAERT 804 Query: 493 AVKDKLIGT 501 A+ + G+ Sbjct: 805 AMNTPIQGS 813 >gi|326440578|ref|ZP_08215312.1| DNA polymerase I [Streptomyces clavuligerus ATCC 27064] Length = 884 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 85/547 (15%), Positives = 157/547 (28%), Gaps = 92/547 (16%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D T + D V HN+ +F + + LA Sbjct: 355 DTTRLDEADERAFAAWIADPARPKVMHNAKDALRVFPEHGW---RVDGITMDTALAAYLV 411 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 P A AL+ L + D T + + Sbjct: 412 KPGRRSFALDALSVE----------YLHRELVPAAADGQLAFGTDEHAEADALMAQARAV 461 Query: 165 RDV----EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 D+ A E L D E L + G D + ++ L A ++ Sbjct: 462 LDLGDAFTARLEEVGATELLHDMELPTSELLARMERHGIAADRAHLESMEHLFAGAVQQA 521 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------LKSILSHSNI 270 ++ + L+ F + ++ L H Sbjct: 522 VKEAHATVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAGQTEHELP 580 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + + RL S+ + L + V++DGR+ T A+ TGR S QN+ Sbjct: 581 VIMLRHREQARLRST------VEGLIKTVAADGRIHTTFSQTVAA-TGRLSSTDPNLQNV 633 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVL 389 P + +R + G + L+ AD + IE RV+ Sbjct: 634 PVRT------------------------DEGRAIRRGFVVGEGFESLMTADYSQIELRVM 669 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGA 445 A ++ ++ I+AF +GED++ T ++ F +V E R K M L Y G + Sbjct: 670 AHLSQDEGLIRAFTSGEDLHNTVASQVFGVATSEVDAEMRRKIKAMSYGLAYGLSAFGLS 729 Query: 446 KVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLW 484 + A + + + + E+ + Sbjct: 730 QQLNIEAGEARALMDTYFERFGGVRDYLRHVVDEARATGYTATMLGRRRYLPDLNSDNRQ 789 Query: 485 MQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSI 538 ++ A+ + GTA ++VK A + + +L + + + G Sbjct: 790 RREAAERMALNAPIQGTAADIVKIAMLRVDRALREAGLSSRLLLQVHDEIVLEISPGERD 849 Query: 539 SARRVAN 545 + Sbjct: 850 EVETIVR 856 >gi|15604609|ref|NP_221127.1| DNA polymerase I [Rickettsia prowazekii str. Madrid E] gi|6015004|sp|O05949|DPO1_RICPR RecName: Full=DNA polymerase I; Short=POL I gi|2073478|emb|CAA72476.1| DNA polymerase I [Rickettsia prowazekii] gi|3861304|emb|CAA15203.1| DNA POLYMERASE I (polA) [Rickettsia prowazekii] gi|5912302|emb|CAB56085.1| DNA polymerase I [Rickettsia prowazekii] gi|5912306|emb|CAB56089.1| DNA polymerase I [Rickettsia prowazekii] gi|292572425|gb|ADE30340.1| DNA polymerase I [Rickettsia prowazekii Rp22] Length = 867 Score = 210 bits (535), Expect = 5e-52, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 129/365 (35%), Gaps = 54/365 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + + + + G ++D + + +L + E K++E+I L+ + L Sbjct: 467 EIDLPTCFILDKMEKVGIKVDANYLNRLSDEFGTEILKIEEEIFALSGTKF-NIGSQKQL 525 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295 LF + + T + +L++D L+L + ++L Sbjct: 526 GEILFKKMQLPSGNTLAKTSSYSTRAGILKKLSEDGYHIATLLLRWRQLTKLKNTYTDSL 585 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + +++ + T ++ TGR S QN+P + Sbjct: 586 PKQINNITKRIHTTFLQTSTTTGRLSSQEPNLQNVPIRSSD------------------- 626 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 + +R IA G KL+ AD + IE R+L+ IA D +AF N EDI+ T + Sbjct: 627 -----GNKIREAFIAEEGYKLISADYSQIELRILSHIANIDVLKQAFINKEDIHTQTACQ 681 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 FN +++ E R K + + Y G AK S ++Q+ K Sbjct: 682 IFNLKKHELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNSTASEYIKQYFAEYKGVQE 741 Query: 472 FEDWEQAES-------------------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + +A + H ++ A+ + GT +++K A Sbjct: 742 YMTQTKACASRNGYVTNFFGRKCFIPLIHDKKLKQFAERAAINAPIQGTNADIIKIAMIK 801 Query: 513 KHQGV 517 + + Sbjct: 802 LDKEI 806 >gi|116495190|ref|YP_806924.1| DNA polymerase I [Lactobacillus casei ATCC 334] gi|116105340|gb|ABJ70482.1| DNA polymerase I [Lactobacillus casei ATCC 334] Length = 881 Score = 210 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 65/406 (16%), Positives = 138/406 (33%), Gaps = 70/406 (17%) Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + +LFG++ ++ D+ E ++ +D E L + + Sbjct: 437 KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEI 496 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G ++ + + +Q K L+E I G+ + L LF + ++ Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311 ++ + + + +L + + KLN+ L +A D ++ Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P ++ +R + S Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429 G ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + Y G ++ + + + D Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 Q S + ++ A+ + G+A +++K A Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M + G ++L VHDE++ E P+ + L Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853 >gi|12001920|gb|AAG43103.1|AF038543_1 DNA polymerase I [Rhodococcus sp. ATCC 15963] Length = 915 Score = 210 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 99/567 (17%), Positives = 174/567 (30%), Gaps = 114/567 (20%) Query: 33 CAY-----AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 CAY A ++ L D ++ P L + A ++L G Sbjct: 377 CAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWAIHAL---------RGRG 420 Query: 88 IPSKRWICTSVLARTNGLPS--SLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPP 144 + LA P S L+L + L G+ ++ Sbjct: 421 WTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAE 480 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEA----TRELFKRLIPLSDGERDLWLLDQTINDRGYR 200 T + D+ A E + LSD E L + I G Sbjct: 481 AAET--------AMLSAQAVLDLAAALGTELESIESKSLLSDMELPLTIELAQIEATGIV 532 Query: 201 IDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT 260 +D + LQ A + ++ D I + L++ LF + ++ Sbjct: 533 VDSAHLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTG 591 Query: 261 LK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQ 310 H + L R+ + ++ L +AV+ DGR+ T Sbjct: 592 YSTDAEALQGLFDKTGHPFLEHLLAHRDATRMKVT------VDGLLKAVAEDGRIHTTFN 645 Query: 311 FYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA 370 A+ TGR S QN+P A +R + Sbjct: 646 QTVAA-TGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVV 680 Query: 371 SNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQR 429 G L+ AD + IE R++A ++G++ I+AF GED++ ++AF PI++V+ E R Sbjct: 681 GQGFDVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELR 740 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---- 481 K M L Y G A K + + + ++ Sbjct: 741 RRVKAMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGY 800 Query: 482 -----------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KH 514 + ++ A+ + GTA +++K A K Sbjct: 801 TSTLYGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALADAGLKS 860 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISAR 541 + +LQ+ +L E + + Sbjct: 861 RMLLQVHDELVLEVVASELEEVTALVK 887 >gi|224417856|ref|ZP_03655862.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253827195|ref|ZP_04870080.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313141399|ref|ZP_07803592.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] gi|253510601|gb|EES89260.1| DNA polymerase type I [Helicobacter canadensis MIT 98-5491] gi|313130430|gb|EFR48047.1| DNA polymerase I [Helicobacter canadensis MIT 98-5491] Length = 896 Score = 210 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 95/588 (16%), Positives = 180/588 (30%), Gaps = 111/588 (18%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMP 54 D ET S + K A I +++ + Sbjct: 334 SFDTETTS-LDVRK---------AKIVGFSFSVNGVDCYYIPIAHNYLGVESQVSLECAR 383 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDI-PSKRWICTSVLARTNGLPSSLKNAC 113 + Q + + V+ HN ++ + K + + + +LA + Sbjct: 384 ECIEQIFQSQYVI--GHNLKYDLEILKTNFDFVLEDFSKVRDSMLLAWLLQSDTLCNLDF 441 Query: 114 LALNFSEHLT---KMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQL-FGEYCKRDVEA 169 L + H K GK F I + + +QL F D E+ Sbjct: 442 LMKKYFNHEMIHYKDIVGKNEN--FSNILIQH-ACEYASEDAAACYQLYFKLRGLMD-ES 497 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 E+ ++ E + G +IDL+ L L ++ ++ E+I L + Sbjct: 498 LLEIAQK------VEFPFIQSLMNMELSGIKIDLEYFLGLNAETREKLHQISEEIFVLAN 551 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSIL--------SHSNITQLAKDLILNR 281 + L LF ++ ++ + SH I ++ + + Sbjct: 552 KRF-NLNSPQQLASILFDDLKLEASKKTKSGYSTSELVLNSLYDSHPIIPKILEYRESFK 610 Query: 282 LASSGSAILKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 L S+ + L E SD R+ + G + TGR S QN+P + Sbjct: 611 LYSTY-----IEPLIEHAKSDLEHRIYTSFMQTG-TSTGRLSSKNPNLQNIPVKTL---- 660 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R IA L+ D + IE R+LA + + I Sbjct: 661 --------------------EGRRIRKGFIAKENCLLISLDYSQIELRLLAHFSQDKAMI 700 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHC 455 AF DI++ T K F +++++E+RA+ K + L Y G K K Sbjct: 701 DAFLQDADIHLETAKKIFG---EEMAQEKRAVAKSINFGLIYGMGPKKLSETLKINFQEA 757 Query: 456 GLDLQQFSQNVKSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVK 495 +Q + + F E + + + + Sbjct: 758 KTYIQNYFTSFPMIKNFLKEQEEFILENGYSKTLLGRMRKFDFEGVQEYQKAAFLREGIN 817 Query: 496 DKLIGTACELVKKAWRA------KHQGVLQLWKDLTEGFACVVQEGGS 537 G+A +++K A + + +LQ+ +L + + Sbjct: 818 AIFQGSAADIIKMAMNKIMHSSLESKLLLQVHDELIFEAPKEIASKEA 865 Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 3/54 (5%) Query: 601 IVQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDT-PYFSVGTLCSLM 651 I Q + DI+ M + ++L VHDE++ E P + +M Sbjct: 819 IFQGSAADIIKMAMNKIMHSSLESKLLLQVHDELIFEAPKEIASKEAKKIALIM 872 >gi|124516396|gb|EAY57904.1| DNA polymerase I [Leptospirillum rubarum] Length = 872 Score = 210 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 92/566 (16%), Positives = 167/566 (29%), Gaps = 107/566 (18%) Query: 35 YAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERI-LFKKTLGIDIPSKRW 93 + D + + + + + + RDE F++ L++K + Sbjct: 360 WVHDGDQANFYPFSSEEEVLKR-MSAWRDEGKAVW----CFDQTRLYRKCPRFFALGIPF 414 Query: 94 ICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV 153 + + +A P L F + D P R Sbjct: 415 VFDATIAAYLLEPGHRDYLLENL--------------AARYFLTDTSDRP--RLVRNVLS 458 Query: 154 QAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + W D L + E L + + G RID + +E I Sbjct: 459 KLW--------EDAVKE----GLLELVQSIEIPLGRILYQMEVLGIRIDRQALESARESI 506 Query: 214 AQERKKLDEDIVKLTD--GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHS 268 ++L+E+I +L I S +Q L+ G+ + T + L+ Sbjct: 507 EALARELEEEIYRLAGSRFTILSPKQV---GEILYGKLGLPTARKGKTGYSTDEETLTGL 563 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + + IL ++ +S V + GRL G + TGR S Q Sbjct: 564 SGLHPLPEKILAYRQMKKLLSTYVDPISRGVDAQGRLHGQFN-QTVTATGRLSSSNPNLQ 622 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P + A +R C IA + L+ AD + IE R+ Sbjct: 623 NIPMRS------------------------PAGREIRKCFIAGENRVLLSADYSQIELRL 658 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV- 447 LA + + + F EDI+ T F P V+ E R K + + Y A Sbjct: 659 LAHFSEDPELMAVFERNEDIHARTARLLFGDP---VTPETRRKAKTINFGILYGMSAFSL 715 Query: 448 ---FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHL 483 + ++ D + + Sbjct: 716 SLDLGVEPPEAQAFIDRYFGAFPKVGPLFDSILEEAKKTGEVRTILGRKRRIPELSAPDR 775 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAW------RAKHQGVLQLWKDLTEGFACVVQEGGS 537 ++ AV L G+A +L+KK+ R V L + + V+E Sbjct: 776 RSREYGERMAVNTVLQGSAADLIKKSMVDFGQVRKDRPEVGDLLVQVHDELLFEVREDN- 834 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLP 563 + + + + + + +P Sbjct: 835 -----LEDASGTIRSLMEGALRLKVP 855 >gi|28199079|ref|NP_779393.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] gi|28057177|gb|AAO29042.1| truncated phage-related DNA polymerase [Xylella fastidiosa Temecula1] Length = 290 Score = 210 bits (535), Expect = 6e-52, Method: Composition-based stats. Identities = 74/214 (34%), Positives = 105/214 (49%), Gaps = 12/214 (5%) Query: 468 STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 + S E E+ + P F + D+ AC++ K+AWR H + W+ L Sbjct: 82 AASPMPIQEAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCA 140 Query: 528 FACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT- 582 + + + ++ + + + LPS R L Y+ + G SY+ T Sbjct: 141 VTDAIGHPETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTH 195 Query: 583 -ATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPY 641 T + R TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D Sbjct: 196 PVTRKWTRITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAA 255 Query: 642 FSVGTLCSLMTKNPSWAKGLPLKAEGYEAKRYRK 675 F+ L +LM P WA+GLPL AEG++ RYRK Sbjct: 256 FNAAHLAALMATPPPWAQGLPLAAEGFQTHRYRK 289 >gi|227534792|ref|ZP_03964841.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187548|gb|EEI67615.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 881 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 65/406 (16%), Positives = 138/406 (33%), Gaps = 70/406 (17%) Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + +LFG++ ++ D+ E ++ +D E L + + Sbjct: 437 KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQEQTDLFTDMEMPLSRVLAEMEI 496 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G ++ + + +Q K L+E I G+ + L LF + ++ Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311 ++ + + + +L + + KLN+ L +A D ++ Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P ++ +R + S Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429 G ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + Y G ++ + + + D Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 Q S + ++ A+ + G+A +++K A Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813 Score = 44.3 bits (103), Expect = 0.062, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M + G ++L VHDE++ E P+ + L Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853 >gi|297559935|ref|YP_003678909.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844383|gb|ADH66403.1| DNA polymerase I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 928 Score = 210 bits (534), Expect = 6e-52, Method: Composition-based stats. Identities = 83/553 (15%), Positives = 156/553 (28%), Gaps = 75/553 (13%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSD-LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A + D T ++ L +L D H + Sbjct: 381 LAISVPSGDAVFVDPTALDPADTEALADFLADPRRPKAVHEYKGALLALGAHGW---ELG 437 Query: 92 RWICTSVLARTNGLPS----SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDC 147 + + LA P L + C L + G L Sbjct: 438 GVVSDTALAAYLVQPGQRRFDLADLCR-KYLGRELEEDSSGDQLTLDLGGEDGAGSGRQH 496 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 A A + +++ L + E L + + G D + Sbjct: 497 LLAVRASATRDLAGVLSAELDKRGGTHL----LHEVELPLVDVLARLERAGIAADRPYLE 552 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 +LQ A + E ++ + L+ LF G+ + + Sbjct: 553 ELQGEFAAAGRVAVERAHEIVGREF-NLGSPKQLQQVLFEDLGLPRTKKIKTGYTTDADA 611 Query: 268 SNITQLAKDLILNRLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 D L + KL T L + V+ DGR+ T A+ TGR S Sbjct: 612 LAWLASQTDNELPAVLLHHRDQTKLRTTVEGLIKTVADDGRIHTTFNQTVAA-TGRLSST 670 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLA 382 QN+P + +R + G + L+ AD + Sbjct: 671 DPNLQNIPVRT------------------------DVGRRIRRAFVVGEGYEELLTADYS 706 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++GE I AF +G D + A+ F+ +++V E R+ K M L Y Sbjct: 707 QIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEVEQVDGEARSRIKAMSYGLAYG 766 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH----------------- 481 G ++ ++ + + + E+ Sbjct: 767 LSAYGLSQQLGITPEESKRLMEDYFAEFGGVRDYLNAMVEEARRVGYTETILGRRRYLPD 826 Query: 482 ----HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACV 531 + ++ A+ + G+A +++K A + ++ + + Sbjct: 827 LTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRVDAALTEGGLTSRVLLQVHDELVVE 886 Query: 532 VQEGGSISARRVA 544 V G + Sbjct: 887 VAPGERAEVENIV 899 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 44/269 (16%), Positives = 92/269 (34%), Gaps = 24/269 (8%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK A+ I+ T + P + + +G+ + A G + Sbjct: 641 EGLIKTVADDGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDVGRRIRRAFVVGEGYEEL 700 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + + + H M Q + V +++ G A +K Sbjct: 701 LT-ADYSQIELRIMAHLSGEQALIDAFNSGYDFHAQMAAQIFDVEV-EQVDGEARSRIKA 758 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 G+ G ++R+ + ++ ++ +RR+ Sbjct: 759 MSYGLAYGLSAYGLSQQLGIT-------PEESKRLMEDYFAEFGGVRDYLNAMVEEARRV 811 Query: 569 VYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN------ 620 Y++ + G YL TS + R ++ N +Q + DI+ M Sbjct: 812 GYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLRVDAALTEGGL 871 Query: 621 GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++L VHDE+V E V + + Sbjct: 872 TSRVLLQVHDELVVEVAPGERAEVENIVA 900 >gi|318056313|ref|ZP_07975036.1| DNA polymerase I [Streptomyces sp. SA3_actG] gi|318075964|ref|ZP_07983296.1| DNA polymerase I [Streptomyces sp. SA3_actF] Length = 914 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 89/525 (16%), Positives = 158/525 (30%), Gaps = 80/525 (15%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D V H + + G + + L P A AL+ Sbjct: 400 LGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALSLE 455 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 ++ + + G+ D L R E E Sbjct: 456 YLGRELVPAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGL----- 510 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E L + G D + + +++ A ++ + + Sbjct: 511 LTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREAHAAVGHEF-NLGSPK 569 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA--KDLILNRLASSGSAILKL----N 293 L+ LF G++L + ++ LA + L L KL Sbjct: 570 QLQEVLFG--GLNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTVE 627 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L ++++ DGR+ T A+ TGR S QN+P + Sbjct: 628 GLIKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------------------- 667 Query: 354 ADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTT 412 +R + G + L+ AD + IE RV+A ++ ++ I AF +GED++ T Sbjct: 668 -----DEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTV 722 Query: 413 YAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 FN V E R K M L Y G ++ A + + + Sbjct: 723 AGYVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTYFERFGG 782 Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507 + E+ + ++ A+ + GTA ++VK Sbjct: 783 VRDYLHRVVEEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVK 842 Query: 508 KAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A + +LQ+ ++ A +E RR Sbjct: 843 IAMLGVDRALREAELTSRMLLQVHDEIVLELAPGEREPVEEILRR 887 >gi|91206022|ref|YP_538377.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157826616|ref|YP_001495680.1| DNA polymerase I [Rickettsia bellii OSU 85-389] gi|123388086|sp|Q1RH76|DPO1_RICBR RecName: Full=DNA polymerase I; Short=POL I gi|91069566|gb|ABE05288.1| DNA polymerase I [Rickettsia bellii RML369-C] gi|157801920|gb|ABV78643.1| DNA polymerase I [Rickettsia bellii OSU 85-389] Length = 871 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 126/365 (34%), Gaps = 54/365 (14%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + + + + + G ++D + + +L E KL+E+I L+ + L Sbjct: 471 EIDLPVCFVIDKMEKAGIKVDANYLNQLSSEFGAEILKLEEEIFVLSGMKF-NIGSPKQL 529 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLNTL 295 LF + S + +L++ DL+L + ++L Sbjct: 530 GEILFEKMQLPFGKTSAKANSYSTGADILEKLSEQGYPIADLLLRWRQLTKLKNTYTDSL 589 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + + R T ++ TGR S QN+P + Sbjct: 590 PKQIDNITRRIHTTFLQTSTTTGRLSSQEPNLQNVPIRS--------------------- 628 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 + +R +A G KL+ AD + IE R+L+ IA +AF N +DI+ T + Sbjct: 629 ---GEGNKIRQAFVAEQGYKLISADYSQIELRILSHIADIKALKQAFINKDDIHTQTACQ 685 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 FN ++++ E R K + + Y G AK + ++++ K Sbjct: 686 IFNLQKEELTSEHRRKAKAINFGIIYGISAFGLAKQLNVSNTEAAEYIKKYFAEYKGVQE 745 Query: 472 FEDWEQAESHHLWMQDQY-------------------PEFAVKDKLIGTACELVKKAWRA 512 + + ++ + + A+ + GT +++K A Sbjct: 746 YMEATKSFAQANGYVTDFFGRKCFVPLINDKRLKQFAERAAINAPIQGTNADIIKIAMTL 805 Query: 513 KHQGV 517 + + Sbjct: 806 LDREI 810 Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 13/71 (18%) Query: 588 MRERTYGGKLTENI-VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTP 640 R + + + N +Q + DI+ M + +VL +HDE++ E P Sbjct: 776 KRLKQFAERAAINAPIQGTNADIIKIAMTLLDREIEKRKLKTRLVLQIHDELLFEAP--- 832 Query: 641 YFSVGTLCSLM 651 + + ++M Sbjct: 833 ---IDEIETIM 840 >gi|289426864|ref|ZP_06428590.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|295130349|ref|YP_003581012.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] gi|289159953|gb|EFD08131.1| DNA-directed DNA polymerase [Propionibacterium acnes J165] gi|291376122|gb|ADD99976.1| DNA-directed DNA polymerase [Propionibacterium acnes SK137] Length = 910 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ V H++ K + + W C Sbjct: 377 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 428 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 429 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 488 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 489 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 538 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 539 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 597 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 598 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 650 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 651 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 686 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 687 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 746 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 747 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 806 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 807 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 866 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 867 LEVAKGEEEKVREIV 881 Score = 41.3 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 829 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 881 >gi|226321854|ref|ZP_03797380.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] gi|226233043|gb|EEH31796.1| DNA polymerase I family protein [Borrelia burgdorferi Bol26] Length = 908 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 92/628 (14%), Positives = 191/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485 AK + + + + F + + Sbjct: 754 AKELRITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813 Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893 >gi|124808322|ref|XP_001348285.1| Pfprex [Plasmodium falciparum 3D7] gi|23497176|gb|AAN36724.1| Pfprex [Plasmodium falciparum 3D7] Length = 2016 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 90/561 (16%), Positives = 184/561 (32%), Gaps = 80/561 (14%) Query: 11 RSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE--QSAMPSDLLQYLRDETVMC 68 + G+ + E I L A ++ PV ++D + + L + L ++ ++ Sbjct: 1466 YCGLDIETTGLEVFDEN--IRLIQIAVENYPVIIYDMFNINKKDILDGLRKVLENKNIIK 1523 Query: 69 VAHNSLFER-ILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEE 127 + N F+ L I+ +I + +L + + N + + L K ++ Sbjct: 1524 IIQNGKFDAKFLLHNNFKIENIFDTYIASKLLDKNKNMYGFKLNNIVEKYLNVILDKQQQ 1583 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR-LIPLSDGERD 186 + + +L E K ++ ++ + ++P+ D E + Sbjct: 1584 NSVWNNSLLNNNQLFYAARDSSCLLKLYKKLKEEIKKENLHIVNDIENKCILPICDMELN 1643 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 G ++DL+ + K I E +++ K + + L Sbjct: 1644 -----------GIKVDLENLQKSTNEILNELNIEKDNLKKKLKDENINVNSQQQVLKALQ 1692 Query: 247 LITGIDLVDM-----SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVS- 300 D+ + S+ LK+ L+H I L L +L S+ L ++ Sbjct: 1693 KNNVRDISNKLIENTSDSNLKNFLNHEEIISLRNYRRLYKLYSAF-----YLKLPLHINT 1747 Query: 301 SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLA 360 ++ T + +GR+S Q +PRQ Sbjct: 1748 KTNKIHTTFNQL-KTFSGRFSSEKPNLQQIPRQ--------------------------- 1779 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R I ++ ++AD IE ++ A I ++ +KA+ N D++ T + Sbjct: 1780 -KNIREIFIPNDNNIFIIADFKQIELKIAAEITNDEIMLKAYNNNIDLHTLTASIITKKN 1838 Query: 421 IDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQ-NVKSTSTFEDWEQAE 479 I ++KE R I K + L Y K A+ Q S FE ++ Sbjct: 1839 IPDINKEDRHIAKAINFGLIYGMNYVNLKNYANTYYGLNMSLDQCLYFYNSFFEHYKGIY 1898 Query: 480 SHHLWMQDQYP------------------EFAVKDKLIGTACELVKKAWRAKHQGVLQLW 521 H ++ + A+ + GT +++K A + Sbjct: 1899 KWHNQVKQKRALQYSTLSNRKVIFPYFSFTKALNYPVQGTCADILKLALVDLYDN----L 1954 Query: 522 KDLTEGFACVVQEGGSISARR 542 KD+ V + I + Sbjct: 1955 KDINGKIILCVHDEIIIEVNK 1975 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 12/122 (9%) Query: 535 GGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 G ++S + +K K Y + +++ Sbjct: 1875 GLNMSLDQCLYFYNSFFEHYKGIYKWHNQ-------VKQKRALQYSTLSNRKVIFPYFSF 1927 Query: 595 GKLTENIVQAISRDILCEGMK----NATKNGYDIVLTVHDEIVSETPDT-PYFSVGTLCS 649 K VQ DIL + N I+L VHDEI+ E ++ L Sbjct: 1928 TKALNYPVQGTCADILKLALVDLYDNLKDINGKIILCVHDEIIIEVNKKFQEEALKILVQ 1987 Query: 650 LM 651 M Sbjct: 1988 SM 1989 >gi|324103781|gb|ADY17821.1| DNA polymerase [Nasonia vitripennis secondary endosymbiont phage] Length = 234 Score = 210 bits (534), Expect = 7e-52, Method: Composition-based stats. Identities = 101/234 (43%), Positives = 140/234 (59%), Gaps = 8/234 (3%) Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 DM TL+ ++ +I + ++L+ RL S ++ K L ++VS+DGRLRGT QF GA Sbjct: 1 DMQASTLQRRVNDPDIPRALRELLSVRLQSCTTSTSKYKALLKSVSADGRLRGTKQFCGA 60 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI---ADPLGLASDCVRSCIIAS 371 SRTGRW+G +FQP NLPR ++ + + ++AL G D + L S +R CIIA Sbjct: 61 SRTGRWAGRIFQPDNLPRPTLDQKTIDEGVEALKAGCAELICDDIMQLTSSALRGCIIAP 120 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN-----GEDIYVTTYAKAFNTPIDKVSK 426 GKKLV++DL+ IE R+LAW+AGE+WK+ AF+ G+D+Y YA+AF V+K Sbjct: 121 XGKKLVISDLSNIEGRMLAWLAGENWKVXAFSEFDNGKGDDLYKLAYARAFYLLPXNVTK 180 Query: 427 EQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 QR IGKVMEL LGY GG F T A GLDL + ++ +A S Sbjct: 181 AQRQIGKVMELGLGYGGGVAAFLTFALAYGLDLDEXAEAALPNIPHNVKREAIS 234 >gi|289426253|ref|ZP_06427999.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] gi|289153418|gb|EFD02133.1| DNA-directed DNA polymerase [Propionibacterium acnes SK187] Length = 915 Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ V H++ K + + W C Sbjct: 382 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 433 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 434 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 493 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 494 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 543 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 544 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 602 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 603 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 655 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 656 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 691 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 692 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 751 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 752 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 811 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 812 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 871 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 872 LEVAKGEEEKVREIV 886 Score = 41.3 bits (95), Expect = 0.56, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 834 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 886 >gi|223888854|ref|ZP_03623445.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] gi|223885670|gb|EEF56769.1| DNA polymerase I family protein [Borrelia burgdorferi 64b] Length = 908 Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats. Identities = 92/628 (14%), Positives = 190/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485 AK + + + F + + Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813 Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893 >gi|34762572|ref|ZP_00143567.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887738|gb|EAA24812.1| DNA polymerase I [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 627 Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 147/399 (36%), Gaps = 64/399 (16%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ + E L + + +G ID+ + +E ++++ I + Sbjct: 220 DLYKILM---ENEMPLIQVLSLMERKGIEIDIQYFKNYSLELDKELLRIEKAIYEEAGEE 276 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 277 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 335 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P + Sbjct: 336 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 383 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 384 -------------GIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 430 Query: 408 IYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 431 LHDLTARRIFNLSDTETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 490 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + ++FE +S + ++ Q AV + GT Sbjct: 491 FEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 550 Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEG 535 A E++KK K + + L + + V+E Sbjct: 551 AAEVLKKVMVKVYDVLKDKEDITLLLQVHDELIFEVEEN 589 Score = 44.7 bits (104), Expect = 0.044, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 519 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEDITLLLQV 578 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E + + +M Sbjct: 579 HDELIFEVEENSVEKYSEILADIM 602 >gi|168701979|ref|ZP_02734256.1| DNA polymerase I [Gemmata obscuriglobus UQM 2246] Length = 824 Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 82/427 (19%), Positives = 139/427 (32%), Gaps = 62/427 (14%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWI 94 EPV P +L L+ + + HN F+ I+ + + Sbjct: 443 GEPV---------LNPDTVLAALKPVFENPAIEKRNHNIKFDLIVLAAS---GVELAGVA 490 Query: 95 CTSVLARTNGLPSSLKNACLALNFSEH-------LTKMEEGKALIARFCKGSIDSPPYDC 147 S++A P + + L E + GK I Y C Sbjct: 491 GDSMVAHYLLDPGARAHGLDDLTLDELRHTNISIKELIGTGKKQITMAEVPVARVRDYAC 550 Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 A+ + D REL+ L E L + + G R+D+ ++ Sbjct: 551 EDADAALQ-LAAAFEPRLDAAGLRELYDTL------EVPLIRVLAEMEHVGIRVDVPFLV 603 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSH 267 +L + +E + DI L + L+ LF + + + + Sbjct: 604 QLGVQMGEELAGYEGDIHALAGRAF-NIGSLKELQKILFDELKLPVQKRTGIKNEPSTDQ 662 Query: 268 SNITQLAKD-LILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWS 321 ++ +LA L + + + KL + L +GR+ + A TGR S Sbjct: 663 ESLERLAALGHELPKKLLAYRKVSKLKSTYVDVLPALADKNGRVHTSFNQASA-ETGRLS 721 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADL 381 QN+P + +R I +G LV AD Sbjct: 722 SSEPNLQNVPTRT------------------------EQGAQLRKAFIPRDGWVLVTADY 757 Query: 382 AGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGY 441 + IE R+L G+D AFA D++ A+ F P +V+K QR + K + + Y Sbjct: 758 SQIELRLLTHFCGDDTLRAAFAEDRDVHTAVAAQIFKVPEGEVTKAQRGVAKTVNFGVLY 817 Query: 442 QGGAKVF 448 A Sbjct: 818 GMSATGL 824 >gi|224532705|ref|ZP_03673322.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] gi|224512323|gb|EEF82707.1| DNA polymerase I family protein [Borrelia burgdorferi WI91-23] Length = 908 Score = 209 bits (533), Expect = 8e-52, Method: Composition-based stats. Identities = 92/628 (14%), Positives = 190/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485 AK + + + F + + Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813 Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893 >gi|290969141|ref|ZP_06560666.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] gi|290780647|gb|EFD93250.1| DNA-directed DNA polymerase [Megasphaera genomosp. type_1 str. 28L] Length = 857 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 66/434 (15%), Positives = 142/434 (32%), Gaps = 76/434 (17%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 LF EA + F E L + G+ +D + ++ + + Sbjct: 432 ALFAAQVWEKEEAALQQFGLTDLYERIEAPLLYTLSVMETNGFTVDTARLQAMKTALTAQ 491 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS-----HS 268 L+ +I + + L LF + + + ++ T +L H Sbjct: 492 AAALENEIYEAAGAAF-NINSPKQLGHMLFEVLHLPVRKKTKTGYSTDAEVLESLRDAHP 550 Query: 269 NITQLAKDLILNRLASSGSAILKLNTLSEA-VSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 + ++ + L +L S+ L+ L V + GR+ + + TGR S Sbjct: 551 AVEKIVRFRALKKLISTY-----LDGLEPLIVPATGRVYTSF-HQTVTATGRLSSSDPNL 604 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEA 386 QN+P + +RS + G ++ D + IE Sbjct: 605 QNIPIRT------------------------EQGKKIRSLFVPGKGYDYILSGDYSQIEL 640 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ---- 442 R+LA ++ + I F +DI+ T ++ F+ P ++V+ E+R+ K + + Y Sbjct: 641 RLLAHLSQDPTMIDGFKKNQDIHRRTASEVFHIPWEQVTPEERSHAKAVNFGIIYGISDF 700 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESH 481 G A+ + ++ + + + + S Sbjct: 701 GLARNIGISRAQAKQYIESYFARYSTIHGYMEELVRQAKETGITRTMFGRMRTLTDINSK 760 Query: 482 HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACV 531 + + A+ + G+A +++K A A + + ++Q+ +L Sbjct: 761 NFTRRSLAERMAMNTPIQGSAADIIKLAMNAVQRELEQRQLRSRLLVQVHDELVLEVPAD 820 Query: 532 VQEGGSISARRVAN 545 E +R Sbjct: 821 ELELVKTLLKRTME 834 >gi|312148136|gb|ADQ30795.1| DNA polymerase I superfamily [Borrelia burgdorferi JD1] Length = 908 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 93/628 (14%), Positives = 193/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483 AK + + + F ++ S++ Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893 >gi|218249427|ref|YP_002375054.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] gi|218164615|gb|ACK74676.1| DNA polymerase I superfamily protein [Borrelia burgdorferi ZS7] Length = 908 Score = 209 bits (533), Expect = 9e-52, Method: Composition-based stats. Identities = 92/628 (14%), Positives = 191/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEILIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485 AK + + + + F + + Sbjct: 754 AKELRITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813 Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893 >gi|195941682|ref|ZP_03087064.1| DNA polymerase I (polA) [Borrelia burgdorferi 80a] Length = 908 Score = 209 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 95/620 (15%), Positives = 195/620 (31%), Gaps = 117/620 (18%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 + LA + H K E+ F S++ Y A+ + + LF + K Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSSEDADITFRLFNLFTKKLK 500 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D RL + + E + + + G +D + + + + + +E + ++ +I Sbjct: 501 EDK------LDRL--MHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277 +K + GI + + LF + L + + I H +I L K Sbjct: 553 IK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHESIENLIKYR 611 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + +L S+ + + L E ++ RL + + TGR + QN+P Sbjct: 612 QIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQNIP----- 660 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R NG + AD + IE +LA ++ ++ Sbjct: 661 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 701 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 IKAF N +DI+ T +K F +++ R I K + + Y+ AK Sbjct: 702 VLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITK 761 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPE 491 + + + F + + + Sbjct: 762 EEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAER 821 Query: 492 FAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVM 551 A+ + G+A +++K A ++++ + + + + + P Sbjct: 822 IAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEMLIESPIEEE 873 Query: 552 RRHKRDVHIVLPSSRRLVYS 571 K+ + I++ ++ L Sbjct: 874 NEVKKILKIMMETAYTLNLP 893 >gi|15594893|ref|NP_212682.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] gi|6225284|sp|O51498|DPO1_BORBU RecName: Full=DNA polymerase I; Short=POL I gi|2688462|gb|AAC66909.1| DNA polymerase I (polA) [Borrelia burgdorferi B31] Length = 908 Score = 209 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 92/628 (14%), Positives = 190/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485 AK + + + F + + Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813 Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893 >gi|216264622|ref|ZP_03436614.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] gi|215981095|gb|EEC21902.1| DNA polymerase I superfamily protein [Borrelia burgdorferi 156a] Length = 908 Score = 209 bits (533), Expect = 1e-51, Method: Composition-based stats. Identities = 92/628 (14%), Positives = 190/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNLFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKIKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM------------------- 485 AK + + + F + + Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNY 813 Query: 486 --QDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893 >gi|313809768|gb|EFS47489.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA1] Length = 892 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ V H++ K + + W C Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 849 LEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|225549672|ref|ZP_03770638.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] gi|225369949|gb|EEG99396.1| DNA polymerase I family protein [Borrelia burgdorferi 118a] Length = 908 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 93/628 (14%), Positives = 193/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483 AK + + + F ++ S++ Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893 >gi|152992904|ref|YP_001358625.1| DNA polymerase I [Sulfurovum sp. NBC37-1] gi|151424765|dbj|BAF72268.1| DNA polymerase I [Sulfurovum sp. NBC37-1] Length = 898 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 93/567 (16%), Positives = 185/567 (32%), Gaps = 83/567 (14%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMC-VAHNSLFERILFKKTL 84 E+A +++ E+ P D + L+ V N F+ L Sbjct: 356 EKAYYVPVGHSYLG--------VEEQVDPEDAVAALKKLMKQKIVGQNLKFDLSLLYNQY 407 Query: 85 GIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 G++ + T ++A S + LA F ++ M+ K ++ + + Sbjct: 408 GMEEVLP-FADTMIMAWLTDPGSRVGLDSLAQKFFKYD--MKPFKEMVKK-GENFSHVNI 463 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRE-LFKRLIPLSDGERDLWLLDQTINDRGYRIDL 203 D T AW F Y + L L D E + + G ++D Sbjct: 464 ADATFYAAEDAWMTFLLYGAIKKKMELSSLTHLLKEAKDVEYPFINVLIRMERLGIKVDQ 523 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKS 263 + L++ ++++ +L +I +L+ + R T L + LF G+ ++ Sbjct: 524 VKLETLKKTLSEDLHRLTSEIHELSGSEF-NIRSTQQLGVVLFQHLGLKGGKKTK--TGY 580 Query: 264 ILSHSNITQLAKDLILNRLASSGSAILK-----LNTLSEAVSSD--GRLRGTLQFYGASR 316 + + + L + + K + L + D R+ + G + Sbjct: 581 STNEAVLQSLKHEHPVIGKILEYREYHKMLSTYVEPLLKLAKKDEKSRIYTSFIQTG-TA 639 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKL 376 TGR S QN+P + VR +A G KL Sbjct: 640 TGRLSSKDPNLQNIPVRS------------------------TLGRSVREAFVAKEGYKL 675 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 V D + IE R+LA + + ++AF G DI++ T K F ++ +K +R K + Sbjct: 676 VSIDYSQIELRLLAHFSKDAALMEAFNKGTDIHMATAVKLFG---EEEAKAKRNFAKSVN 732 Query: 437 LALGYQGGAKV----FKTMASHCGLDLQQFSQNVKSTSTF-------------------- 472 L Y G K ++ + + + + F Sbjct: 733 FGLLYGMGPKKLSDELGITSAEAKEIIANYFASFPTVKNFLEGIQERVKIDGYVETLLKR 792 Query: 473 EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ------LWKDLTE 526 E+ + + Y +V G+A +L+K + ++ + + + Sbjct: 793 RRIFDYENANGMQKAAYMRESVNTVFQGSAADLIKLSMNDIDSMIIDEALEAHMLLQIHD 852 Query: 527 GFACVVQEGGSISA-RRVANVPRLVMR 552 ++E +R +V + Sbjct: 853 ELIFEIREDQVEKISKRFVHVMEHIWE 879 >gi|291456503|ref|ZP_06595893.1| DNA polymerase I [Bifidobacterium breve DSM 20213] gi|291381780|gb|EFE89298.1| DNA polymerase I [Bifidobacterium breve DSM 20213] Length = 951 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 82/461 (17%), Positives = 160/461 (34%), Gaps = 83/461 (18%) Query: 138 GSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL------- 190 + P + + E D+ REL L P+ D R WL+ Sbjct: 489 VDAEQPAQGVLDFDDEHTEEDLNERRVHDLAVIRELAVTLGPVIDERRQYWLMRAIELPV 548 Query: 191 ---DQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + G +ID + +++ A + ++ E + G I + + L+ LF+ Sbjct: 549 SRVLHGMEQSGAKIDRSRLTDMRDRFAADARQAQEMAWQYAGGEI-NLQSPKQLQKVLFV 607 Query: 248 ITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSE 297 G+ ++ L+++ HS + A + L + LK + TL + Sbjct: 608 DMGLKPTKRTKNGSYTTNAAALQNLYIHSVDNEQANGFLGALLRHRETNKLKQIVQTLID 667 Query: 298 AVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 A + D R+ T + A+ TGR S QN+P + Sbjct: 668 ATNKADERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR----------------------- 703 Query: 357 LGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +RS + G + L+ D + +E R++A ++G++ I+AF +G D + + Sbjct: 704 -NAVGREIRSVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASM 762 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 + P+D+++ +QR+ K M L Y G A+ ++ Sbjct: 763 VYGVPVDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLNIAQREAEALKNRYFDTFGKVHD 822 Query: 472 FEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + A + + +D A+ + G+A +++K A Sbjct: 823 YLESLVATAREKGYTETIFGRRRYFPALRSTNRMARDAAERAALNAPIQGSAADIMKIAM 882 Query: 511 RAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541 Q +LQ+ +L A E + R Sbjct: 883 IRAGQALDEAGVKSRIILQIHDELVVEIAPGESEQVTELIR 923 >gi|221218069|ref|ZP_03589535.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224533585|ref|ZP_03674174.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] gi|221192017|gb|EEE18238.1| DNA polymerase I family protein [Borrelia burgdorferi 72a] gi|224513258|gb|EEF83620.1| DNA polymerase I family protein [Borrelia burgdorferi CA-11.2a] Length = 908 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 93/628 (14%), Positives = 193/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483 AK + + + F ++ S++ Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893 >gi|313764718|gb|EFS36082.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA1] gi|313772534|gb|EFS38500.1| DNA-directed DNA polymerase [Propionibacterium acnes HL074PA1] gi|313807262|gb|EFS45749.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA2] gi|313815783|gb|EFS53497.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA1] gi|313818308|gb|EFS56022.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA2] gi|313820070|gb|EFS57784.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA1] gi|313823121|gb|EFS60835.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA2] gi|313825602|gb|EFS63316.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA1] gi|313830677|gb|EFS68391.1| DNA-directed DNA polymerase [Propionibacterium acnes HL007PA1] gi|313833897|gb|EFS71611.1| DNA-directed DNA polymerase [Propionibacterium acnes HL056PA1] gi|314915209|gb|EFS79040.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA4] gi|314918562|gb|EFS82393.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA1] gi|314919825|gb|EFS83656.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA3] gi|314925492|gb|EFS89323.1| DNA-directed DNA polymerase [Propionibacterium acnes HL036PA3] gi|314931840|gb|EFS95671.1| DNA-directed DNA polymerase [Propionibacterium acnes HL067PA1] gi|314955996|gb|EFT00394.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA1] gi|314958391|gb|EFT02494.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA1] gi|314960256|gb|EFT04358.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA2] gi|314973679|gb|EFT17775.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA1] gi|314976272|gb|EFT20367.1| DNA-directed DNA polymerase [Propionibacterium acnes HL045PA1] gi|314978243|gb|EFT22337.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA2] gi|314983518|gb|EFT27610.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA1] gi|314987707|gb|EFT31798.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA2] gi|314990186|gb|EFT34277.1| DNA-directed DNA polymerase [Propionibacterium acnes HL005PA3] gi|315084573|gb|EFT56549.1| DNA-directed DNA polymerase [Propionibacterium acnes HL027PA2] gi|315085909|gb|EFT57885.1| DNA-directed DNA polymerase [Propionibacterium acnes HL002PA3] gi|315088673|gb|EFT60649.1| DNA-directed DNA polymerase [Propionibacterium acnes HL072PA1] gi|315096299|gb|EFT68275.1| DNA-directed DNA polymerase [Propionibacterium acnes HL038PA1] gi|315101027|gb|EFT73003.1| DNA-directed DNA polymerase [Propionibacterium acnes HL046PA1] gi|327325935|gb|EGE67725.1| DNA polymerase I [Propionibacterium acnes HL096PA2] gi|327332192|gb|EGE73929.1| DNA polymerase I [Propionibacterium acnes HL096PA3] gi|327442814|gb|EGE89468.1| DNA-directed DNA polymerase [Propionibacterium acnes HL013PA2] gi|327446185|gb|EGE92839.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA2] gi|327447832|gb|EGE94486.1| DNA-directed DNA polymerase [Propionibacterium acnes HL043PA1] gi|327451036|gb|EGE97690.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA3] gi|327453611|gb|EGF00266.1| DNA-directed DNA polymerase [Propionibacterium acnes HL083PA2] gi|328753069|gb|EGF66685.1| DNA-directed DNA polymerase [Propionibacterium acnes HL087PA1] gi|328753724|gb|EGF67340.1| DNA-directed DNA polymerase [Propionibacterium acnes HL020PA1] gi|328759186|gb|EGF72802.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA2] gi|328760568|gb|EGF74136.1| DNA polymerase I [Propionibacterium acnes HL099PA1] Length = 892 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ V H++ K + + W C Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 849 LEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|313791768|gb|EFS39879.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA1] gi|313802145|gb|EFS43377.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA2] gi|313838477|gb|EFS76191.1| DNA-directed DNA polymerase [Propionibacterium acnes HL086PA1] gi|314963066|gb|EFT07166.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA1] gi|315077530|gb|EFT49588.1| DNA-directed DNA polymerase [Propionibacterium acnes HL053PA2] gi|315080314|gb|EFT52290.1| DNA-directed DNA polymerase [Propionibacterium acnes HL078PA1] gi|327452882|gb|EGE99536.1| DNA-directed DNA polymerase [Propionibacterium acnes HL092PA1] Length = 892 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ V H++ K + + W C Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 849 LEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|312149051|gb|ADQ29122.1| DNA polymerase I superfamily [Borrelia burgdorferi N40] Length = 908 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 93/628 (14%), Positives = 193/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFESNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483 AK + + + F ++ S++ Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYTLNLP 893 >gi|225548643|ref|ZP_03769690.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] gi|225370673|gb|EEH00109.1| DNA polymerase I family protein [Borrelia burgdorferi 94a] Length = 908 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 93/628 (14%), Positives = 192/628 (30%), Gaps = 133/628 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + N F+ + K IP + T + A S Sbjct: 383 YIEKNYIIQKFNNLFKSNPKIIGQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSSED 484 Query: 167 VEATRELFKRL----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + + +E Sbjct: 485 ADITFRLFNIFTKKLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LEAIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKYRQIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483 AK + + + F ++ S++ Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNAGYSETILKRRRYIKEINSNNY 813 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + A+ + G+A +++K A ++++ + + + + + Sbjct: 814 LERSAAERIAINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEML 865 Query: 544 ANVPRLVMRRHKRDVHIVLPSSRRLVYS 571 P K+ + I++ ++ L Sbjct: 866 IESPIEEENEVKKILKIMMETAYILNLP 893 >gi|237741676|ref|ZP_04572157.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294785713|ref|ZP_06751001.1| DNA polymerase I [Fusobacterium sp. 3_1_27] gi|229429324|gb|EEO39536.1| DNA polymerase I [Fusobacterium sp. 4_1_13] gi|294487427|gb|EFG34789.1| DNA polymerase I [Fusobacterium sp. 3_1_27] Length = 912 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 74/398 (18%), Positives = 147/398 (36%), Gaps = 64/398 (16%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ + E L + + +G ID+ + +E K+++ I + Sbjct: 505 DLYKILM---ENEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLKIEKAIYEEAGEE 561 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P + Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 669 -------------GIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 715 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + ++FE +S + ++ Q AV + GT Sbjct: 776 FEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835 Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQE 534 A E++KK K + + L + + V+E Sbjct: 836 AAEVLKKVMVKVYDVLKDKEEIALLLQVHDELIFEVEE 873 Score = 44.7 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQV 863 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E ++ + +M Sbjct: 864 HDELIFEVEESSVEKYSEILADIM 887 >gi|21324121|dbj|BAB98746.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Corynebacterium glutamicum ATCC 13032] Length = 905 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 78/419 (18%), Positives = 140/419 (33%), Gaps = 75/419 (17%) Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 DV A EL + L D E L + + G +D+ + + + Sbjct: 477 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 536 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + + +E +L + + L++ LF G+ ++ + + + Sbjct: 537 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 596 Query: 276 DLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + K L L V+ DGR+ T AS TGR S QN+P Sbjct: 597 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIP 655 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 + + +RS + G L+ AD + IE RV+A Sbjct: 656 VRTEA------------------------GRKIRSGFVVGEGYETLLTADYSQIEMRVMA 691 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 ++ + I+A+ GED++ +K FN PID V+ E R K M L Y G ++ Sbjct: 692 HLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQ 751 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485 A ++ + + + E+ + Sbjct: 752 QLSIPAGEAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVA 811 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 ++ A+ + GTA +++K A K + +LQ+ +L A E Sbjct: 812 RENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELE 870 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%) Query: 396 DWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKV 447 + I+ A I+ T + + +T + + R K+ G + Sbjct: 618 EGLIREVAPDGRIHTTFNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRS-GFVVGEGYET 676 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 T A + ++++ + + E + + E H ++ + G EL + Sbjct: 677 LLT-ADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYV----GSKVFNVPIDGVTPELRR 731 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + +A G++ + G A+++ +R + ++ +R+ Sbjct: 732 QV-KAMSYGLVYGLSAFGLSQQLSIPAG---EAKQIMESYFERFGGVQRYLREIVEEARK 787 Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT------K 619 Y++ G YL TS R + N +Q + DI+ M Sbjct: 788 AGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAA 847 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++L VHDE+V E V + Sbjct: 848 VKSRVLLQVHDELVVEVAAGELEQVREILE 877 >gi|258515120|ref|YP_003191342.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] gi|257778825|gb|ACV62719.1| DNA-directed DNA polymerase [Desulfotomaculum acetoxidans DSM 771] Length = 755 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 102/617 (16%), Positives = 207/617 (33%), Gaps = 110/617 (17%) Query: 57 LLQYLRDETVMCVAHNSLFE-RILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L L D + + HNS ++ +L + L + + + N +LKN Sbjct: 192 LKPILTDVNIGKILHNSKYDIHMLIRHGLRLRGIKHDTMIAMAVLNENEPTLALKNLAT- 250 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175 + ++ ++ F K S P D Y +D T EL+K Sbjct: 251 -KYGKYFGFEDKSYTYEELFGKTSFAEIPLDAALV-----------YAAKDTHLTYELYK 298 Query: 176 RL-----------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + E L + + G+ ID+D ++ + + E L+ ++ Sbjct: 299 WQRQHLNQKESLRLIYDELENPLIDVCVDMEQAGFLIDMDFAMEYKAELKGEIAGLEANL 358 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-----GTLKSILSHSNITQLAKDLIL 279 + I + L L+ + ++ E TLK + + + D++L Sbjct: 359 TEHFGDI--NFNSPLQLAAVLYDKLKLPVIKGKERSTDVKTLKKLRDETKHEGI--DVLL 414 Query: 280 NRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + + L + + DG L G+ A+ TGR++ QNLP Sbjct: 415 KYRELTKLLGTYVEALPQLIKKDGLLHGSFN-QVATVTGRFASREPNLQNLP-------- 465 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 R I+A ++ D + IE RVLA ++G+ Sbjct: 466 ----------------------PRARRLIVAPEDSLILGVDFSQIEPRVLAHMSGDPHLQ 503 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKV--SKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 + + G+D+Y T ++ F ++ + R + KV LA+ Y T+A G+ Sbjct: 504 EPYLKGQDLYSTLASRVFKVSYEECGDDSKYRKMMKVGLLAVMYGTS---MWTLADQLGI 560 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +++ +Q ++ F + + + + + L G + Sbjct: 561 TVEEANQFIED--FFATYPDVYAFICATHEFAKQNEYVETLYGR-------------KRR 605 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRR--HKRDVHIVLPSSRRLVYSDVKG 575 ++ +V + + + + +K+++ ++L R V KG Sbjct: 606 FPGHRE-----KAIVYDKLATEICEILGTKAVPYDYWQYKKELPVILRRQFRAV----KG 656 Query: 576 DCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSE 635 + + +Q + DI+ + N +G I+ TVHDE + Sbjct: 657 EVERVRRM-------------AVNARIQGTAADIMKRALINLYNDGRKIIGTVHDEALLI 703 Query: 636 TPDTPYF-SVGTLCSLM 651 V + + M Sbjct: 704 VNKNITLAEVEKIEACM 720 >gi|310778664|ref|YP_003966997.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] gi|309747987|gb|ADO82649.1| DNA polymerase I [Ilyobacter polytropus DSM 2926] Length = 903 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 79/466 (16%), Positives = 161/466 (34%), Gaps = 69/466 (14%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT----KMEEGKALIARF 135 FK L K ++A + ++ + L+ K GK ++ Sbjct: 408 FKDILNEGYEIKNIHFDVMIAYFLLTAQTKESIEVVLHNETGDDFPLYKDIFGKEDPSKL 467 Query: 136 CKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIN 195 + + + L D +LF + E L L+ + Sbjct: 468 PVEEYGEFMMKRSESLYDIYKDLKNRIELED---MHDLFY------NVEMKLILILSKME 518 Query: 196 DRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD 255 G ID + + ++ + ++L ++I K+++ + L LF+ I+ V Sbjct: 519 QEGIAIDPEYFREFSLELSDKLQELKKNIFKISEEEF-NLNSPKQLAEILFMKLNIEPVS 577 Query: 256 MSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQF 311 ++ + + + + + + IL+ + ++ L + RL T Sbjct: 578 KTKTGFSTNVDVLETLRDRGEKIAEYILDYRKLTKLQSTYVDALPKLADERNRLHTTFNQ 637 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 GA+ TGR S QN+P +R I+ Sbjct: 638 TGAA-TGRLSSSNPNLQNIP------------------------VKSDEGIKIRRGFISD 672 Query: 372 NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAI 431 G L+ D + IE RVLA ++ ++ IKA+++G D++ T K F+ D V++ QR + Sbjct: 673 KGNTLLAIDYSQIELRVLAELSKDETLIKAYSDGLDLHDLTAKKIFDIDTD-VTRSQRTM 731 Query: 432 GKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW------------ 475 K++ ++ Y G +K ++++ + E+ Sbjct: 732 AKIVNFSIIYGKTPFGLSKELGISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEETGYVK 791 Query: 476 ---------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + S + ++ Q AV + GTA +++KK Sbjct: 792 TYFGRKRSVDGISSKNGNIKKQADRMAVNTVIQGTAADILKKVMIE 837 Score = 42.0 bits (97), Expect = 0.31, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 16/131 (12%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNTATSQ 586 + Q+ +R V ++ + + Y K G S Q Sbjct: 754 ISQKDAKEYIKRYFEQYPRVKELEEKIIKNAEETGYVKTYFGRKRSVDGISSKNGNIKKQ 813 Query: 587 LMRERTYGGKLTENIVQAISRDILCEGM-----KNATKNGYDIVLTVHDEIVSETPDTPY 641 R ++Q + DIL + M K KN + L VHDE++ E D Sbjct: 814 ADRMA------VNTVIQGTAADILKKVMIEIDKKIKDKNDIKMNLQVHDELIFEVKDESV 867 Query: 642 FSVGT-LCSLM 651 + ++M Sbjct: 868 EKYADLIKNIM 878 >gi|301066754|ref|YP_003788777.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] gi|300439161|gb|ADK18927.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Lactobacillus casei str. Zhang] Length = 881 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 65/408 (15%), Positives = 138/408 (33%), Gaps = 74/408 (18%) Query: 146 DCTRANHVQAWQLFGEYCKR-DV----------EATRELFKRLIPLSDGERDLWLLDQTI 194 + + +LFG++ ++ D + ++ L +D E L + + Sbjct: 437 KGAKRQVPEDDKLFGQFARKSDALFALRPDLTGDLEKQAQTDLF--TDMEMPLSRVLAEM 494 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLV 254 +G ++ + + +Q K L+E I G+ + L LF + ++ Sbjct: 495 EIQGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVI 553 Query: 255 DMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTL 309 ++ + + + +L + + KLN+ L +A D ++ Sbjct: 554 KKTKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY 611 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 ++TGR S QN+P ++ +R + Sbjct: 612 -LQTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFV 645 Query: 370 AS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKE 427 S G ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + Sbjct: 646 PSHEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPD 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------- 474 R K + Y G ++ + + + D Sbjct: 706 MRRQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKARED 765 Query: 475 ------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 Q S + ++ A+ + G+A +++K A Sbjct: 766 GYVETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813 Score = 45.1 bits (105), Expect = 0.043, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M + G ++L VHDE++ E P+ + L Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIVQLSELV 853 >gi|256832458|ref|YP_003161185.1| DNA polymerase I [Jonesia denitrificans DSM 20603] gi|256685989|gb|ACV08882.1| DNA polymerase I [Jonesia denitrificans DSM 20603] Length = 893 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 81/543 (14%), Positives = 158/543 (29%), Gaps = 74/543 (13%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLAL 116 L Q+L D + H++ G K I + LA P L Sbjct: 373 LRQWLMDPHYPKIVHSAKEAWHALHSFSG---GVKGVIADTELAAYLAFPDQRSYGLEDL 429 Query: 117 NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + + + + ++A Sbjct: 430 SIRYVSRDITPVAHQAQ---GSLDLGLDDTDDALRALANRAAVLPQLAQALDAELSDRSL 486 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + E L ++ + G +DL+ + L A + + + + + + Sbjct: 487 TALYQEMELPLTVVLAQMEHVGVAVDLEQLRSLDAFFAHQGSEAQKAAFEAIGRQV-NLG 545 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL---- 292 L+ LF + + + + + + KL Sbjct: 546 SPKQLQEVLFDQLDMPKTKKIKTGYTTDAASLADLFVKTGHPFLQHLLEYRDSTKLRQTV 605 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L ++V+ DGR+ T Q A+ TGR S QN+P + + Sbjct: 606 EGLLKSVADDGRVHTTFQQTVAA-TGRLSSTDPNLQNIPIRTET---------------- 648 Query: 353 IADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R + G L+ AD + IE R++A ++ +D I AF GED++ Sbjct: 649 --------GRRIRQGFVVGEGLDTLLTADYSQIEMRIMAHLSQDDGLISAFQAGEDLHNF 700 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467 A+ F ID+V+ + R+ K M L Y G +K + + Sbjct: 701 VGARVFGVSIDEVTPQMRSKVKAMSYGLAYGLSAFGLSKQLNISVGEASTLMDDYFTRFG 760 Query: 468 STSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELV 506 + A + + ++ A+ + G+A +++ Sbjct: 761 GVRDYLTSVVARARTTGYTETIMGRRRYLPDLTSDNRQRRENAERVALNAPIQGSAADVI 820 Query: 507 KKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 K+A +L + + V G A R+ V + + Sbjct: 821 KQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQEIAERI------VREEMAGAMQL 874 Query: 561 VLP 563 +P Sbjct: 875 SVP 877 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 7/58 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652 +Q + D++ + M ++L +HDE++ E + M Sbjct: 812 IQGSAADVIKQAMLGVDAAFRSEGLSSRLLLQIHDELIVEVAPGEQEIAERIVREEMA 869 >gi|82617846|gb|ABB84840.1| PolI DNA polymerase [uncultured delta proteobacterium DeepAnt-32C6] Length = 857 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 83/496 (16%), Positives = 158/496 (31%), Gaps = 69/496 (13%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKT-LGIDIPSKRWICTSVLARTNGL-PS 107 + L +L D + V H+S R+L + + + S L GL P Sbjct: 328 GEGALALLRGWLEDSARLKVVHDSKRLRVLLARYGVSLSGVVADPRLESFLVDPTGLVPH 387 Query: 108 SLKNACLAL---NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV-QAWQLFGEYC 163 + A + + GK + + + C RA+ V W E Sbjct: 388 RIDQLVKAFLQRTVPPAKSVLGSGKKARRFAELAASVTGAWACQRADVVVTMWPQIRERL 447 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 + +L L + + L + T+ G R++ + ++ +L+ + Sbjct: 448 EE--------VDQLPHLQEVDLPLSEVLATMELAGVRVEPTELEEMSAEFRATLLQLEAE 499 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILN 280 I + + L + LF + ++ ++ T +L L+L Sbjct: 500 IWRQAGREF-NVASPKQLGVVLFEELNLPVIKRTKTGYSTAAEVLERLTREHPIAGLLLQ 558 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 + L A++ GR+ T Q A+ TGR Q P + Sbjct: 559 HRKLAKLLTTYTEVLRAAINPVTGRVHPTFQQTYAA-TGRLISTNPDIQKTPVRT----- 612 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 +R I + G +++ AD + IE R+LA + + + Sbjct: 613 -------------------PEGKRIRRAFIPAPGWRIISADWSQIELRLLAHFSSDPNLL 653 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HC 455 +AFA ED++ T A+ F + V+ QR++ K + A Y GA Sbjct: 654 EAFAQDEDVHRRTAAELFGCVPEAVTDAQRSVAKTVNFATIYGQGATALGQRLGLKRTEA 713 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 + ++ Q + D + S+ ++ A Sbjct: 714 KGYISRYFQAYAGVREWLDRTIEGALASGYVETLLGRRRVIPELSSNSAMVRQVGMRMAA 773 Query: 495 KDKLIGTACELVKKAW 510 + G+A +L K Sbjct: 774 NTPIQGSAADLCKLVM 789 >gi|239632072|ref|ZP_04675103.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526537|gb|EEQ65538.1| DNA polymerase I [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 881 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 65/406 (16%), Positives = 137/406 (33%), Gaps = 70/406 (17%) Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + +LFG++ ++ D+ E + +D E L + + Sbjct: 437 KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 496 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G ++ + + +Q K L+E I G+ + L LF + ++ Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311 ++ + + + +L + + KLN+ L +A D ++ Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P ++ +R + S Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429 G ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + Y G ++ + + + D Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 Q S + ++ A+ + G+A +++K A Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M + G ++L VHDE++ E P+ + L Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853 >gi|191638699|ref|YP_001987865.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] gi|190713001|emb|CAQ67007.1| DNA-directed DNA polymerase I [Lactobacillus casei BL23] Length = 881 Score = 209 bits (531), Expect = 1e-51, Method: Composition-based stats. Identities = 65/406 (16%), Positives = 137/406 (33%), Gaps = 70/406 (17%) Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + +LFG++ ++ D+ E + +D E L + + Sbjct: 437 KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 496 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G ++ + + +Q K L+E I G+ + L LF + ++ Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311 ++ + + + +L + + KLN+ L +A D ++ Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P ++ +R + S Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429 G ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + Y G ++ + + + D Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 Q S + ++ A+ + G+A +++K A Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M + G ++L VHDE++ E P+ + L Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853 >gi|327382740|gb|AEA54216.1| DNA polymerase I [Lactobacillus casei LC2W] gi|327385927|gb|AEA57401.1| DNA polymerase I [Lactobacillus casei BD-II] Length = 881 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 65/406 (16%), Positives = 137/406 (33%), Gaps = 70/406 (17%) Query: 146 DCTRANHVQAWQLFGEYCKR---------DVEATRELFKRLIPLSDGERDLWLLDQTIND 196 + + +LFG++ ++ D+ E + +D E L + + Sbjct: 437 KGAKRQVPEDDKLFGQFARKSNALFALRPDLTGDLEKQAQTDLFTDMEMPLSRVLAEMEI 496 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G ++ + + +Q K L+E I G+ + L LF + ++ Sbjct: 497 QGITLNAKTLKAMGTEFSQSIKILEEKIYA-EAGVKFNLNSPKQLGEILFEKLNLPVIKK 555 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQF 311 ++ + + + +L + + KLN+ L +A D ++ Sbjct: 556 TKTGYSTSVD--VLNELKSASPIVQDILDYRGWAKLNSTYVVGLLKAQLPDHKIHTRY-L 612 Query: 312 YGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS 371 ++TGR S QN+P ++ +R + S Sbjct: 613 QTLTQTGRLSSVDPNMQNIPARDE-------------------------GKIIRKAFVPS 647 Query: 372 -NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQR 429 G ++ +D + IE RVL+ I+G++ +AF +G DI+ T K F D+V+ + R Sbjct: 648 HEGWQIFSSDYSQIELRVLSHISGDENMQEAFKHGVDIHANTAMKIFGLSSPDQVTPDMR 707 Query: 430 AIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED----------- 474 K + Y G ++ + + + D Sbjct: 708 RQAKATNFGIVYGISDYGLSQNIGISRKQAKAFIDGYFDQYPKVHDYMDAMVKKAREDGY 767 Query: 475 ----------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 Q S + ++ A+ + G+A +++K A Sbjct: 768 VETLFHRRRYLPQIHSRNFNLRKFAERTAMNTPIQGSAADIIKVAM 813 Score = 44.3 bits (103), Expect = 0.061, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + DI+ M + G ++L VHDE++ E P+ + L Sbjct: 801 IQGSAADIIKVAMIRMQKALDEAGLQAKMLLQVHDELIFEAPEEEIAQLSELV 853 >gi|145295490|ref|YP_001138311.1| DNA polymerase I [Corynebacterium glutamicum R] gi|140845410|dbj|BAF54409.1| hypothetical protein [Corynebacterium glutamicum R] Length = 880 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 78/419 (18%), Positives = 140/419 (33%), Gaps = 75/419 (17%) Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 DV A EL + L D E L + + G +D+ + + + Sbjct: 452 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 511 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + + +E +L + + L++ LF G+ ++ + + + Sbjct: 512 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 571 Query: 276 DLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + K L L V+ DGR+ T AS TGR S QN+P Sbjct: 572 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIP 630 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 + + +RS + G L+ AD + IE RV+A Sbjct: 631 VRTEA------------------------GRKIRSGFVVGEGYETLLTADYSQIEMRVMA 666 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 ++ + I+A+ GED++ +K FN PID V+ E R K M L Y G ++ Sbjct: 667 HLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQ 726 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485 A ++ + + + E+ + Sbjct: 727 QLSIPAGEAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVA 786 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 ++ A+ + GTA +++K A K + +LQ+ +L A E Sbjct: 787 RENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELE 845 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%) Query: 396 DWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKV 447 + I+ A I+ T + + +T + + R K+ G + Sbjct: 593 EGLIREVAPDGRIHTTFNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRS-GFVVGEGYET 651 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 T A + ++++ + + E + + E H ++ + G EL + Sbjct: 652 LLT-ADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYV----GSKVFNVPIDGVTPELRR 706 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + +A G++ + G A+++ +R + ++ +R+ Sbjct: 707 QV-KAMSYGLVYGLSAFGLSQQLSIPAG---EAKQIMESYFERFGGVQRYLREIVEEARK 762 Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT------K 619 Y++ G YL TS R + N +Q + DI+ M Sbjct: 763 AGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAA 822 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++L VHDE+V E V + Sbjct: 823 VKSRVLLQVHDELVVEVAAGELEQVREILE 852 >gi|261366357|ref|ZP_05979240.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] gi|282571960|gb|EFB77495.1| DNA polymerase I [Subdoligranulum variabile DSM 15176] Length = 837 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 74/421 (17%), Positives = 138/421 (32%), Gaps = 64/421 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E L + + G+ +D D + + + E + + I + + L Sbjct: 439 EMELPLARVLADMERIGFAVDADGIRAFGDSLRGELDGILQSIYEEVGYEF-NVNSPKQL 497 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLS 296 LF G+ + + + + L + KL L Sbjct: 498 GEALFDKLGLPPRKKT--SRGYSTDAATLESLRPYSPVIDQILKYRTYAKLLSTYVEGLL 555 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 A ++DGR+ T A RTGR S QN+P + Sbjct: 556 SAQAADGRVHSTFIQTEA-RTGRISSTEPNLQNIPIRT---------------------- 592 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R +A GK+LV AD + IE R+LA I G++ +AF +G DI+ +T AK Sbjct: 593 --ELGSRLRGFFVAGAGKELVDADYSQIELRILAHITGDEAMQQAFLHGADIHRSTAAKI 650 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTSTF 472 ++ P +V+ + R+ K + + Y GA K L+ + + Sbjct: 651 YHIPESEVTPQLRSASKAINFGIMYGKGAFSLSKDLDVSVKEADAFLKTYLATFPKVDGY 710 Query: 473 EDWEQA---------------------ESHHLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 A S + ++ A + GTA +++K A Sbjct: 711 MQDCIAHAKEKGYVETLFGRRRALPELASSNFQVRASGERMARNTPIQGTAADIIKLAMV 770 Query: 512 AKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 Q + +L + + E +RV + ++ + + + Sbjct: 771 HVWQRLRDEKLEARLLLQVHDELIVEAPEAEVEEVKRVLREEMEQVVQYSVPLTTDVGTG 830 Query: 566 R 566 + Sbjct: 831 K 831 >gi|295839501|ref|ZP_06826434.1| DNA polymerase I [Streptomyces sp. SPB74] gi|295827509|gb|EDY46324.2| DNA polymerase I [Streptomyces sp. SPB74] Length = 918 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 61/370 (16%), Positives = 117/370 (31%), Gaps = 56/370 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E L + G + D + +++ A ++ + + Sbjct: 515 LTDIELPTSALLARMERAGIKADRAHLEEMERQFAGAVEQAVREAHAAVGHEF-NLGSPK 573 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L+ LF + ++ + + L + KL L Sbjct: 574 QLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVIMLRHREQAKLRSTVEGL 633 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++++ DGR+ T A+ TGR S QN+P + Sbjct: 634 IKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT--------------------- 671 Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + L+ AD + IE RV+A ++ ++ I AF +GED++ T Sbjct: 672 ---DEGRAIRRGFVVGEGFEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 728 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 F V E R K M L Y G ++ A + + + Sbjct: 729 YVFGVEPAAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTYFERFGGVR 788 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + E+ + ++ A+ + GTA ++VK A Sbjct: 789 DYLHRVVEEARATGYTATMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKIA 848 Query: 510 WRAKHQGVLQ 519 + + + Sbjct: 849 MLNVDRALRE 858 >gi|71898989|ref|ZP_00681155.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] gi|71731235|gb|EAO33300.1| truncated phage-related DNA polymerase [Xylella fastidiosa Ann-1] Length = 199 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 74/204 (36%), Positives = 103/204 (50%), Gaps = 12/204 (5%) Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS 537 E+ +Q P F + D+ AC++ K+AWR H + W+ L + + Sbjct: 1 MEALQWTKANQRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHPET 59 Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMRER 591 + ++ + + + LPS R L Y+ + G SY+ T T + R Sbjct: 60 AHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPITRKWTRIT 114 Query: 592 TYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F+ L +LM Sbjct: 115 TYGGKLVENITQAVSRDVLAACMPAIEAAGYSIVLTVHDEIITEADDNAAFNAAHLAALM 174 Query: 652 TKNPSWAKGLPLKAEGYEAKRYRK 675 P WA+GLPL AEG+E RYRK Sbjct: 175 ATPPPWAQGLPLAAEGFETHRYRK 198 >gi|307326068|ref|ZP_07605266.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] gi|306888290|gb|EFN19278.1| DNA polymerase I [Streptomyces violaceusniger Tu 4113] Length = 920 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 86/588 (14%), Positives = 175/588 (29%), Gaps = 96/588 (16%) Query: 34 AYAWDDEPVKLWDRTEQSAM-----PSDLLQY--------LRDETVMCVAHNSLFERILF 80 +A V S PS L + + D V HN+ + Sbjct: 365 TWALGSGSVSEIALATGSGPAAFFDPSQLDEADERTFAEWIADPDRPKVLHNAK---GIM 421 Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKAL-IARFCKGS 139 + + LA P AL+ ++ A + G+ Sbjct: 422 RVFAEHGWSVAGVTMDTALAAYLVKPGRRSFELDALSVEYLGRELSPAVAADSGQLAFGA 481 Query: 140 IDSPPYDC---TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTIND 196 D D + + FG +DV A L +P+S+ L + Sbjct: 482 DDEAERDALMIKARTILDLGEAFGGRL-KDVGAAGLLHDMELPVSE-------LLARMER 533 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 G D + ++++ A + ++ + L+ LF G+ Sbjct: 534 SGIAADRGWLERMEQQFAAAVQHAVQEAHAAVGHEF-NLGSPKQLQEVLFGELGLPKTKK 592 Query: 257 -------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTL 309 L + ++ +L ++ +R + + + L + ++ R+ T Sbjct: 593 TKTGYTTDADALAWLAGQTD-HELPVIMLRHREQARLRST--VEGLIKTIAPGSRIHTTF 649 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 A+ TGR S QN+P + +R + Sbjct: 650 NQTVAA-TGRLSSTDPNLQNIPVRT------------------------DEGRAIRRGFV 684 Query: 370 ASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428 +G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T ++ F+ V E Sbjct: 685 VGDGFESLMTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQVFSVDKSAVDPEM 744 Query: 429 RAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--- 481 R K M L Y G ++ ++ F + + E+ Sbjct: 745 RRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMENFFERFGGVRDYLQRVVEEARATG 804 Query: 482 ------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL----- 518 + ++ A+ + GTA ++VK A + Sbjct: 805 YTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTGEKLS 864 Query: 519 -QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 ++ + + + G + + + + S Sbjct: 865 SRMLLQVHDEIVLEIAPGERERVEELVRREMTGAFGLSAPLDVSVGSG 912 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 49/270 (18%), Positives = 85/270 (31%), Gaps = 26/270 (9%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK A G I+ T + P + + G+ + G + Sbjct: 633 EGLIKTIAPGSRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGDGFESL 692 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + V Sbjct: 693 MT-ADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQ---------VFSVDKSAVDP 742 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + F Q G + AR++ + + V+ +R Sbjct: 743 EMRRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMENFFERFGGVRDYLQRVVEEARA 802 Query: 568 LVYSDVK-GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN--GYD 623 Y++ G YL TS + R ++ N +Q + DI+ M G Sbjct: 803 TGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTGEK 862 Query: 624 I----VLTVHDEIVSETPDTPYFSVGTLCS 649 + +L VHDEIV E V L Sbjct: 863 LSSRMLLQVHDEIVLEIAPGERERVEELVR 892 >gi|323342141|ref|ZP_08082374.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464566|gb|EFY09759.1| DNA-directed DNA polymerase I [Erysipelothrix rhusiopathiae ATCC 19414] Length = 833 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 63/385 (16%), Positives = 127/385 (32%), Gaps = 64/385 (16%) Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 + L + E+ L + RG +D ++ ++ + Q+ + L + +L + Sbjct: 437 EVLSVYEEIEKPLVPILSKCEFRGINVDRSVLDEIALVTHQKIETLSNQVYELAGMEF-N 495 Query: 235 SRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT 294 L LF + T +L IL Sbjct: 496 LNSPKQLAEVLFDHLKLPTKKK-RSTAVDVLEGLIEEHAIIAPILEYRKYQKLYSTYAVG 554 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L++ + +DG++ + + A++TGR S QN+ Sbjct: 555 LTKHIHADGKIHTSFNQH-ATQTGRLSSSDPNLQNIS----------------------- 590 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 + +R +AS G L+ D + IE RVL+++A E ++AF G DI+ T Sbjct: 591 -VRDEETRMIRKAFVASEGCTLMSIDYSQIELRVLSYLADEKRMMEAFNGGHDIHSETAK 649 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTS 470 F D V+ R K + + Y +K + ++++ + + Sbjct: 650 AIFGV--DDVTSTMRRQAKSVNFGIVYGMSEYGLSKQLDITIPEARHFITRYNEIYPNIT 707 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + D + + ++D A+ + GTA +++K A Sbjct: 708 KYMDSVVEDCLRDGYVKTLFNRRRYIPEIYDANRAVKDFGKRAAMNAPIQGTAADIIKIA 767 Query: 510 WRAKHQ----------GVLQLWKDL 524 + +LQ+ +L Sbjct: 768 MIKADELLTSNNYKSSMILQVHDEL 792 >gi|19552567|ref|NP_600569.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|62390237|ref|YP_225639.1| DNA polymerase I [Corynebacterium glutamicum ATCC 13032] gi|41325574|emb|CAF21363.1| DNA POLYMERASE I [Corynebacterium glutamicum ATCC 13032] Length = 880 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 78/419 (18%), Positives = 140/419 (33%), Gaps = 75/419 (17%) Query: 166 DVEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 DV A EL + L D E L + + G +D+ + + + Sbjct: 452 DVIAILELSEELTKQLQEIQAFELYHDLEIPLSGILARMEAIGIAVDVATLEEQLKTFIG 511 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + + +E +L + + L++ LF G+ ++ + + + Sbjct: 512 QVAQEEEAARELAEDPTLNLSSPKQLQVVLFETFGMPKTKKTKTGYSTAAAEIEALAIKN 571 Query: 276 DLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + K L L V+ DGR+ T AS TGR S QN+P Sbjct: 572 PHPFLDHLLAHRQYQKMKTTLEGLIREVAPDGRIHTTFNQTVAS-TGRLSSTDPNLQNIP 630 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLA 390 + + +RS + G L+ AD + IE RV+A Sbjct: 631 VRTEA------------------------GRKIRSGFVVGEGYETLLTADYSQIEMRVMA 666 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 ++ + I+A+ GED++ +K FN PID V+ E R K M L Y G ++ Sbjct: 667 HLSQDPGLIEAYREGEDLHNYVGSKVFNVPIDGVTPELRRQVKAMSYGLVYGLSAFGLSQ 726 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWM 485 A ++ + + + E+ + Sbjct: 727 QLSIPAGEAKQIMESYFERFGGVQRYLREIVEEARKAGYTETLFGRRRYLPELTSDNRVA 786 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQE 534 ++ A+ + GTA +++K A K + +LQ+ +L A E Sbjct: 787 RENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAAVKSRVLLQVHDELVVEVAAGELE 845 Score = 48.6 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 89/270 (32%), Gaps = 26/270 (9%) Query: 396 DWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAIG--KVMELALGYQGGAKV 447 + I+ A I+ T + + +T + + R K+ G + Sbjct: 593 EGLIREVAPDGRIHTTFNQTVASTGRLSSTDPNLQNIPVRTEAGRKIRS-GFVVGEGYET 651 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 T A + ++++ + + E + + E H ++ + G EL + Sbjct: 652 LLT-ADYSQIEMRVMAHLSQDPGLIEAYREGEDLHNYV----GSKVFNVPIDGVTPELRR 706 Query: 508 KAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 + +A G++ + G A+++ +R + ++ +R+ Sbjct: 707 QV-KAMSYGLVYGLSAFGLSQQLSIPAG---EAKQIMESYFERFGGVQRYLREIVEEARK 762 Query: 568 LVYSDV-KGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT------K 619 Y++ G YL TS R + N +Q + DI+ M Sbjct: 763 AGYTETLFGRRRYLPELTSDNRVARENAERAALNAPIQGTAADIIKVAMIRVDRSLKEAA 822 Query: 620 NGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 ++L VHDE+V E V + Sbjct: 823 VKSRVLLQVHDELVVEVAAGELEQVREILE 852 >gi|254550633|ref|ZP_05141080.1| DNA polymerase I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length = 814 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 73/380 (19%), Positives = 137/380 (36%), Gaps = 68/380 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E + + + G +DL ++ +LQ + + E + I + Sbjct: 484 LGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQI-NLGSPK 542 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ ++ H + L + RL + Sbjct: 543 QLQVVLFDELGMPKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT---- 598 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L +AV++DGR+ T A+ TGR S QN+P + Sbjct: 599 --VDGLLQAVAADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRT--------------- 640 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 A +R + +G +L+ AD + IE R++A ++G++ I+AF GED+ Sbjct: 641 ---------DAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDL 691 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKS 468 + ++AF PID+V+ E R K M L Y A ++ + ++ ++ Sbjct: 692 HSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSA---YGLSQQLKISTEEANEQ--- 745 Query: 469 TSTFEDWEQAESHHLWMQDQYPEF-AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEG 527 M + F V+D L K + + G + +L Sbjct: 746 ----------------MDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSS 789 Query: 528 FACVVQEGGSISARRVANVP 547 V + + + VP Sbjct: 790 NRQVRE--AATDSCACFFVP 807 >gi|313827841|gb|EFS65555.1| DNA-directed DNA polymerase [Propionibacterium acnes HL063PA2] gi|315108218|gb|EFT80194.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA2] Length = 892 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ V H++ K + + W C Sbjct: 359 AVWFDAAELSLEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 849 LEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|317124784|ref|YP_004098896.1| DNA polymerase I [Intrasporangium calvum DSM 43043] gi|315588872|gb|ADU48169.1| DNA polymerase I [Intrasporangium calvum DSM 43043] Length = 891 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 71/408 (17%), Positives = 135/408 (33%), Gaps = 73/408 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 LSD E L + + G +D+D + L+E A + + +D G + Sbjct: 487 LSDIELPLIHVLAKMERTGIAVDVDGLSTLEETFAAKVTQAQQDCWDAIGGDQINLGSPK 546 Query: 240 ALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKDLILNRLASSGSAI 289 L++ LF G+ L + H + L + +L + Sbjct: 547 QLQVVLFETLGMPKTKKTKTGYTTDADALAELHAKTEHPFLEALLRHRDAAKLRVT---- 602 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 + L ++VS DGR+ T + TGR S QN+P + Sbjct: 603 --VEGLQKSVSDDGRIHTTY-LQTIAATGRLSSTEPNLQNVPIRT--------------- 644 Query: 350 GETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + +G L+ AD + IE RV+A ++G+ I+AF +GED+ Sbjct: 645 ---------EEGRRIRELFVVGDGYDALMSADYSQIEMRVMAHLSGDSGLIEAFRSGEDL 695 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + ++ F + V+ R+ K M L Y G +K ++ + Sbjct: 696 HRFVGSQVFGVAPEDVTAAMRSKVKAMSYGLAYGLSAYGLSKQLAISTEEAKGLMEGYFA 755 Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503 + D AE+ + ++ A+ + G+A Sbjct: 756 RFGGVRAYLDEVVAEARGTGFTATMFGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAA 815 Query: 504 ELVKKAWRAKHQ------GVLQLWKDLTEGFACVVQEGGSISARRVAN 545 +++K A + ++ + + V R+ Sbjct: 816 DIMKVAMIGVDRTLTEAGARTRILLQVHDELVLEVAADEQADVERIVR 863 Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 88/245 (35%), Gaps = 26/245 (10%) Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 N PI ++E R I ++ + GY + ++++ + + E + Sbjct: 639 NVPIR--TEEGRRIRELFVVGDGYDALMSADYS-----QIEMRVMAHLSGDSGLIEAFRS 691 Query: 478 AESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGG 536 E H ++ Q + G A E V A R+K + + L L+ Sbjct: 692 GEDLHRFVGSQ---------VFGVAPEDVTAAMRSKVKAMSYGLAYGLSAYGLSKQLAIS 742 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGG 595 + A+ + + + V+ +R + + + G YL TS + R Sbjct: 743 TEEAKGLMEGYFARFGGVRAYLDEVVAEARGTGFTATMFGRRRYLPDLTSDNRQRREMAE 802 Query: 596 KLTENI-VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 ++ N +Q + DI+ M + T+ G I+L VHDE+V E V + Sbjct: 803 RMALNAPIQGSAADIMKVAMIGVDRTLTEAGARTRILLQVHDELVLEVAADEQADVERIV 862 Query: 649 -SLMT 652 M Sbjct: 863 REQMG 867 >gi|50842261|ref|YP_055488.1| DNA polymerase I [Propionibacterium acnes KPA171202] gi|50839863|gb|AAT82530.1| DNA polymerase I [Propionibacterium acnes KPA171202] Length = 931 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 86/555 (15%), Positives = 163/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ H++ K + + W C Sbjct: 398 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 449 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 450 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 509 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 510 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 559 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 560 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 618 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 619 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 671 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 672 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 707 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 708 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 767 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 768 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 827 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 828 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 887 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 888 LEVAKGEEEKVREIV 902 Score = 41.3 bits (95), Expect = 0.57, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 850 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 902 >gi|314968099|gb|EFT12198.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA1] Length = 892 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 164/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ V H++ K + + W C Sbjct: 359 AVWFDAAELSLEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 849 LEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|219684305|ref|ZP_03539249.1| DNA polymerase I family protein [Borrelia garinii PBr] gi|219672294|gb|EED29347.1| DNA polymerase I family protein [Borrelia garinii PBr] Length = 908 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 89/569 (15%), Positives = 173/569 (30%), Gaps = 125/569 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKF 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + N F+ + K IP + T + A S Sbjct: 383 YIEKHYIIQKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSCED 484 Query: 167 VEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + +E Sbjct: 485 ADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LELIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKHRRIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTRTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI++ T +K F +++ R I K + + Y+ Sbjct: 694 LAHLSQDEALIKAFENNKDIHIETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483 AK + + + F ++ S++ Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNY 813 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + A+ + G+A +++K A Sbjct: 814 LERSAAERIAINSAIQGSAADIMKIAMIK 842 >gi|189183413|ref|YP_001937198.1| DNA polymerase I [Orientia tsutsugamushi str. Ikeda] gi|189180184|dbj|BAG39964.1| DNA polymerase I (POL I) [Orientia tsutsugamushi str. Ikeda] Length = 889 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 92/591 (15%), Positives = 187/591 (31%), Gaps = 102/591 (17%) Query: 26 EQAVITLCAYAWDDEPVKLWDRTEQ---------SAMP---SDLLQYLRDETVMCVAHNS 73 E+ ++ D + D T P S +++ L D ++ + +N Sbjct: 339 EKNDYISITFSLDLHKLYFIDLTAITSKEQNYATETNPWWKSSIIELLLDSSIQKITYNL 398 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIA 133 I L +I S I +L L + L + E + Sbjct: 399 KELLIFLLNFLRTEITSASCIDDIMLMHYI-LSAGKNELSLNEIIQTYNKSYSEQYSEHK 457 Query: 134 R-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQ 192 + K + D+ +LF K L + + + + + Sbjct: 458 VCWLKNTFDNLMS-----------ELFKN-------------KLLHCYYEIDLPICYILR 493 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I + G +I++ L+ L + + L++ I ++ + L LF + + Sbjct: 494 NIENNGIKINVPLLKDLSAQLKHKIDLLEQHIYQICGQEFNIA-SPKQLGEILFDVLKLP 552 Query: 253 LVDMSEGTLKSILSHSNITQLAK------DLILNRLASSGSAILKLNTLSEAVSSDGRLR 306 +S+ T + L++ DL+L + ++TL ++++ Sbjct: 553 HAKVSQKTKSYSTDSEVLENLSRAGIKIADLLLKWRQLTKLLTTYIDTLPTQINNNTFRV 612 Query: 307 GTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRS 366 T ++ T R S QN+P + VRS Sbjct: 613 HTTLLQTSTTTSRLSSHSPNLQNIPIRS------------------------EYGLKVRS 648 Query: 367 CIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 +A G K++ AD + IE R+L++ A + F GEDI+ +T A+ F D+V++ Sbjct: 649 AFVAPPGSKILSADYSQIELRILSYFANIEQLKNVFIMGEDIHSSTAAQIFKINADQVTE 708 Query: 427 EQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------- 474 E R K + + Y G AK + + + Q + + Sbjct: 709 ENRRKAKAINFGIIYGISAFGLAKQLNISNTEAAQYINHYFQEYPAIRQYMHETKKFAVE 768 Query: 475 -------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA-------KH 514 S +L ++ A+ + TA ++ K A K+ Sbjct: 769 HGYVKNMIGRRCYIPLINSSNLTTRNFAQRAAINAPIQSTASDIAKIAMIQYEKLIYSKY 828 Query: 515 QGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSS 565 + +L + + + E +A + + + + L Sbjct: 829 PAI-KLLLQVHDELVFELPEELVDTACNLIKSTMENIPYFSFPLKVELKIG 878 >gi|229492694|ref|ZP_04386495.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] gi|229320353|gb|EEN86173.1| DNA polymerase I family protein [Rhodococcus erythropolis SK121] Length = 887 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 175/563 (31%), Gaps = 106/563 (18%) Query: 33 CAY-----AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 CAY A ++ L D ++ P L + A ++L G Sbjct: 349 CAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWAIHAL---------RGRG 392 Query: 88 IPSKRWICTSVLARTNGLPS--SLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPP 144 + LA P S L+L + L G+ ++ Sbjct: 393 WTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAE 452 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 T Q + D E K L LSD E L + I G +D Sbjct: 453 AAETAMLSAQ--AVLDLAAALDTELESIESKSL--LSDMELPLTIELAQIEATGIAVDSA 508 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------S 257 + LQ A + ++ D I + L++ LF + Sbjct: 509 HLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTGYTTD 567 Query: 258 EGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L+ + H + L R+ + ++ L +AV+ DGR+ T A Sbjct: 568 AEALQGLFDKTGHPFLEHLLAHRDATRMKVT------VDGLLKAVAEDGRIHTTFNQTVA 621 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG- 373 + TGR S QN+P A +R + G Sbjct: 622 A-TGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGF 656 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ AD + IE R++A ++G++ I+AF GED++ ++AF PI++V+ E R K Sbjct: 657 DVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVK 716 Query: 434 VMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-------- 481 M L Y G A K + + + ++ Sbjct: 717 AMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTL 776 Query: 482 -------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518 + ++ A+ + GTA +++K A K + +L Sbjct: 777 YGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALADAGLKSRMLL 836 Query: 519 QLWKDLTEGFACVVQEGGSISAR 541 Q+ +L E + + Sbjct: 837 QVHDELVLEVVASELEEVTALVK 859 >gi|296129813|ref|YP_003637063.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] gi|296021628|gb|ADG74864.1| DNA polymerase I [Cellulomonas flavigena DSM 20109] Length = 908 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 87/520 (16%), Positives = 159/520 (30%), Gaps = 86/520 (16%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTL-GIDIPSK 91 A A +D T L L D H + E L G + + Sbjct: 357 AVADGAGQAVAYDLTAIDPADETALAAWLADPQRPKALH-AAKEA---SHALAGRGLDLE 412 Query: 92 RWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTR 149 + LA P + LA+ + ++G + + + Sbjct: 413 GVTFDTELAAYLCQPDRRAYDLPDLAIGYLRRELGGDDGSS-------AGQGALDLEVDG 465 Query: 150 ANHVQAWQLFGEYCKRDVEA---TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLV 206 A+ + + + V+ LSD E L + + G ID + Sbjct: 466 ADEGRRAAVRAAAVRDLVDVLGGEVADRGATTLLSDLELPLQAVLARLERTGIAIDHAYL 525 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK---- 262 L+ + + D + + + L+ LF + + Sbjct: 526 SGLEREFDGQVQGAAADAYAVIGREV-NLGSPKQLQEVLFDQLRMPKTKRIKTGYTTDAN 584 Query: 263 ------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 + H + L RL + + L +V+ DGR+R T Q A+ Sbjct: 585 ALTDLFARTGHPFLEHLLAHRDAIRLRQT------VEGLLRSVADDGRIRTTFQQTIAA- 637 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-K 375 TGR S QN+P + A +R + G Sbjct: 638 TGRLSSADPNLQNIPIRT------------------------DAGRQIRRAFVVGPGYAT 673 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ AD + IE R++A ++G++ I AF +GED++ ++ F P D+V+ R+ K M Sbjct: 674 LLTADYSQIEMRIMAHLSGDEGLIAAFRSGEDLHSYVGSRVFGVPTDEVTPTMRSKIKAM 733 Query: 436 ELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF------------------- 472 L Y G ++ S + + + + Sbjct: 734 SYGLAYGLSSYGLSQQLAIEVSEAAALMTDYFERFGGVRDYLTGVVDQARATGYTATVLG 793 Query: 473 --EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 S + ++ A+ + G+A +L+K A Sbjct: 794 RRRYLPDLTSDNRQRREAAERMALNAPIQGSAADLIKVAM 833 >gi|319789775|ref|YP_004151408.1| DNA polymerase I [Thermovibrio ammonificans HB-1] gi|317114277|gb|ADU96767.1| DNA polymerase I [Thermovibrio ammonificans HB-1] Length = 829 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 73/403 (18%), Positives = 142/403 (35%), Gaps = 65/403 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 ++ E L + + RG +++L+ + ++ +++ I +L + Sbjct: 435 YAEVEHPLSYVLYKMEKRGVPFSEKALMELERELEEKISEVETKIFELAGEKF-NLNSPK 493 Query: 240 ALRMYLFLITGIDLVDMSEGT----LKSILSHSNITQLAKDLILNRLASSGSAILKLNTL 295 L LF G+ V + ++++ + + IL+ S + L Sbjct: 494 QLSKVLFEKLGLKPVKKTRSGYSTDVETLTTLALEGHEIAVHILDYRKLSKLLSSFVKAL 553 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + GR+ G G + TGR S QNLP ++D Sbjct: 554 LKRIDETGRVHGNFIQTG-TATGRLSSAEPNLQNLP---------------------VSD 591 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 PL L VR + A G LV AD + +E R+LA ++ + I+AF GEDI+ T Sbjct: 592 PLSL---RVRRAVRAPEGYTLVWADYSQVELRILAHLSQDRNLIEAFLKGEDIHTETAKH 648 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTST 471 F+T +++ +R + K + + Y A+ ++++ Q Sbjct: 649 LFHT--RQITDRERRVAKTVNFGIIYGMSPHGLAERLSIPLQEAKDYIERYFQKFPKVRE 706 Query: 472 FEDWEQAESHHLWMQDQY---------------------PEFAVKDKLIGTACELVKKAW 510 F + E++ + AV + GTA +++K A Sbjct: 707 FIEETVREAYKKGFVETAFGRRRPLPELKEKSFHKRSFGERAAVNTVIQGTAADIMKMAM 766 Query: 511 RAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVAN 545 +LQ+ +L +E + ++V Sbjct: 767 VNLQPEAEKLNSYIILQVHDELVLEAPEGAEEEVAAKVKQVME 809 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 590 ERTYGGKLTEN-IVQAISRDILCEGMKNA----TKNGYDIVLTVHDEIVSETPDTPYFSV 644 +R++G + N ++Q + DI+ M N K I+L VHDE+V E P+ V Sbjct: 741 KRSFGERAAVNTVIQGTAADIMKMAMVNLQPEAEKLNSYIILQVHDELVLEAPEGAEEEV 800 Query: 645 -GTLCSLM 651 + +M Sbjct: 801 AAKVKQVM 808 >gi|126435605|ref|YP_001071296.1| DNA polymerase I [Mycobacterium sp. JLS] gi|126235405|gb|ABN98805.1| DNA polymerase I [Mycobacterium sp. JLS] Length = 929 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 104/597 (17%), Positives = 185/597 (30%), Gaps = 77/597 (12%) Query: 16 LPKVGVW-AYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNS 73 L VG AY A A D + D T L L D H + Sbjct: 357 LAVVGTHLAYDADATALAIVAADGDG--RYIDTTSLDPDDEAALASWLADPGPPKALHEA 414 Query: 74 LFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKAL 131 + G + LA P S L+L + + A Sbjct: 415 K---LAMHDLAGRGWKLAGVTSDTALAAYLVRPGQRSFSLDDLSLRYLR-RELRADNPAQ 470 Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 D + ++A + D E R L L E + + Sbjct: 471 QQLSLLDDSDGGDDQAVQTLILRAVAVLDLADALDEELARIDSSSL--LGRMELPVQRVL 528 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 + G +D+D + +LQ A + E + I + L+ LF + Sbjct: 529 AEMEHTGIAVDIDQLRQLQSEFADLIRDAAEAAYAVIGKQI-NLGSPKQLQAVLFDELAM 587 Query: 252 DLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS 301 ++ H + L RL + ++ L +V+S Sbjct: 588 PKTKRTKTGYTTDADALQSLFDKTGHPFLQHLLAHRDATRLKVT------VDGLLNSVAS 641 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTIQALNRGETIADPLGLA 360 DGR+ T A+ TGR S QN+P R E I + P G Sbjct: 642 DGRIHTTFNQTIAA-TGRLSSTEPNLQNIPIRTEAGRRIRDAFVVESR-------PPGSG 693 Query: 361 SDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 V + +L+ AD + IE R++A ++ + I+AF GED++ ++AF+ P Sbjct: 694 GGAVFT--------ELMTADYSQIEMRIMAHLSQDAGLIEAFNTGEDLHSFVASRAFDVP 745 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-- 474 ID+V+ + R K M L Y G A K + + Q+ + Sbjct: 746 IDEVTPDLRRRVKAMSYGLAYGLSAYGLAAQLKISTEEAKVQMDQYFARFGGIRDYLRDV 805 Query: 475 -------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 + +S + +++ A+ + G+A +++K A Q Sbjct: 806 VDQARKDGYTSTVFGRRRYLPELDSSNRNVREAAERAALNAPIQGSAADIIKVAMIDVDQ 865 Query: 516 GVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + ++ + + V +G + ++ + + + R Sbjct: 866 AIKDAGLSSRMLLQVHDELLFEVADGERDTLEKLVRDKMGSAYALDVPLEVSVGYGR 922 >gi|224532146|ref|ZP_03672778.1| DNA polymerase I [Borrelia valaisiana VS116] gi|224511611|gb|EEF82017.1| DNA polymerase I [Borrelia valaisiana VS116] Length = 907 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 94/561 (16%), Positives = 180/561 (32%), Gaps = 109/561 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 340 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKV 381 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + N F+ + K G D + T + A S Sbjct: 382 YIEKHYIIQKFNNLFKSKPKIIGQNYKFDYKILKNN-GFDPIPP-YFDTMIAAYLIDTNS 439 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 + LA + H K E+ F S++ Y A+ + + +F E K Sbjct: 440 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFAHISLEMATSYSSEDADITFRLFNVFNEKLK 499 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D L K + + E + + + G +D + + + + + +E + ++ +I Sbjct: 500 ED-----GLDKLMY---EIEMPFNRVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 551 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277 +K + GI + + LF + L D + I H +I L K Sbjct: 552 IK-SIGIDFNLNSPKQMHEVLFERLNLKLPDRMKKDSTDIKVLESLKGQHESIENLIKHR 610 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + +L S+ + + L+E ++ RL + TGR + QN+P +E Sbjct: 611 QIAKLKSTYT-----DNLTELINYKTNRLHTNF-IQTKTATGRITSINPNLQNIPIKEEK 664 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R NG + AD + IE +LA ++ ++ Sbjct: 665 ------------------------GRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 700 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 IKAF N +DI+ T +K F +++ R I K + + Y+ AK Sbjct: 701 VLIKAFENNKDIHAETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITK 760 Query: 453 SHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPE 491 + + + F ++ S++ + Sbjct: 761 EEAKGFINSYFDSYPKIKEFITNQINFVRNTGYSETISKRRRYIKEINSNNYLERSAAER 820 Query: 492 FAVKDKLIGTACELVKKAWRA 512 A+ + G+A +++K A Sbjct: 821 IAINSIIQGSAADIMKIAMIK 841 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 +I+Q + DI+ M K I+L VHDE++ E+P + M Sbjct: 823 INSIIQGSAADIMKIAMIKVFNEFKSKKMKSKILLQVHDEMLIESPIEEENETKKILKNM 882 Query: 652 TKNPSWAKGLPLKA 665 + ++ LPL+A Sbjct: 883 MET-AYTLSLPLRA 895 >gi|224534662|ref|ZP_03675234.1| DNA polymerase I family protein [Borrelia spielmanii A14S] gi|224513910|gb|EEF84232.1| DNA polymerase I family protein [Borrelia spielmanii A14S] Length = 908 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 91/622 (14%), Positives = 195/622 (31%), Gaps = 121/622 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + ID ET S + L + + E +P + + Sbjct: 341 KYISIDTET-SSLDIYTA-----------RLIGISISFKE------FEGYYIPIEARGKI 382 Query: 62 ----------------RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 + ++ N F+ + K IP + T + A Sbjct: 383 YIEKHYIIQKFNNFFESNPKII--GQNYKFDYKILKNNGFNPIPP--YFDTMIAAYLIDT 438 Query: 106 PSSLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEY 162 S + LA + H K E+ F S++ Y A+ + + +F + Sbjct: 439 NSKVSLDFLAEKYLMHKNIKYEDVIQKNDNFAGISLEMATSYSSEDADITFRLFNVFSKK 498 Query: 163 CKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 K D +L + + E + + + G +D + + + + + +E + ++ Sbjct: 499 LKEDS------LDKL--MHEIEMPFNNVIIEMEENGIYLDREYLKEYGKELGKELELIET 550 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAK 275 +I+K + GI + + LF + L + + I H +I L K Sbjct: 551 EIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLRGQHESIENLIK 609 Query: 276 DLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + +L S+ + + L E ++ RL + TGR + QN+P Sbjct: 610 HRQIAKLKSTYT-----DNLIELINYKTNRLHTNF-IQTKTATGRVTSINPNLQNIP--- 660 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 +R NG + AD + IE +LA ++ Sbjct: 661 ---------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQ 699 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 ++ IKAF N +DI+ T +K F +++ R I K + + Y+ AK Sbjct: 700 DEVLIKAFENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGI 759 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQY 489 + + + F + + + Sbjct: 760 TKEEAKGFIDSYFDSYPKIKEFIINQINFVRNTGYSETILKRRRYIKEINSNNYLERSAA 819 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 ++ + G+A +++K A ++++ + + + + + P Sbjct: 820 ERISINSIIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEMLIESPIK 871 Query: 550 VMRRHKRDVHIVLPSSRRLVYS 571 K+ + I++ ++ L Sbjct: 872 EENEVKKILKIMMETAYTLTPP 893 >gi|297161389|gb|ADI11101.1| DNA polymerase I [Streptomyces bingchenggensis BCW-1] Length = 912 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 67/403 (16%), Positives = 127/403 (31%), Gaps = 66/403 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E + L + G D D + ++ + A ++ ++ + Sbjct: 509 LRDVELPISALLARMEKAGIAADRDWLDRMDQRFAGAVQQAVKEAHDAVGHEF-NLGSPK 567 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L+ F G+ + + D L + +L L Sbjct: 568 QLQEVFFGELGLPKTKKIKTGYTTDADALAWLATQTDHELPVIMLRHREQARLRSTVEGL 627 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +A++ GR+ T A+ TGR S QN+ Sbjct: 628 IKAIAPGGRIHTTFNQTVAA-TGRLSSTDPNLQNV------------------------H 662 Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 663 VRTEEGRAIRRGFVVGEGFESLLTADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVAS 722 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F +V E R K M L Y G ++ + F + Sbjct: 723 QVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMDTFFERFGGVR 782 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + E+ + ++ A+ + GTA ++VK A Sbjct: 783 DYLQRVVDEARATGYTETMLGRRRYLPDLNSDNRQRREMAERMALNAPIQGTAADIVKIA 842 Query: 510 W----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 + + +LQ+ ++ A +E RR Sbjct: 843 MLRVDEALTKEKLSSRMLLQVHDEIVVEVAPGEREQVEALVRR 885 Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 53/274 (19%), Positives = 92/274 (33%), Gaps = 27/274 (9%) Query: 396 DWKIKAFANGEDIYVT----TYA--KAFNTPIDKVSKEQRAI-GKVMELALGYQGGAKVF 448 + IKA A G I+ T A + +T + + R G+ + G + Sbjct: 625 EGLIKAIAPGGRIHTTFNQTVAATGRLSSTDPNLQNVHVRTEEGRAIRRGFVVGEGFESL 684 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G A V Sbjct: 685 LT-ADYSQIELRVMAHLSEDEGLIEAFTSGEDLHTTVASQ---------VFGVAKSEVDP 734 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEGGSI-SARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + F Q G + AR++ + + + V+ +R Sbjct: 735 EMRRKIKAMSYGLAYGLSAFGLSQQLGITPDEARKLMDTFFERFGGVRDYLQRVVDEARA 794 Query: 568 LVYSDVK-GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620 Y++ G YL S + R ++ N +Q + DI+ M + Sbjct: 795 TGYTETMLGRRRYLPDLNSDNRQRREMAERMALNAPIQGTAADIVKIAMLRVDEALTKEK 854 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652 ++L VHDEIV E V L M Sbjct: 855 LSSRMLLQVHDEIVVEVAPGEREQVEALVRREMA 888 >gi|254384234|ref|ZP_04999578.1| DNA polymerase I [Streptomyces sp. Mg1] gi|194343123|gb|EDX24089.1| DNA polymerase I [Streptomyces sp. Mg1] Length = 906 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 77/505 (15%), Positives = 151/505 (29%), Gaps = 73/505 (14%) Query: 68 CVAHNSLFERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 V HN+ + + LA P A L+ +++ Sbjct: 400 KVVHNAK----GLMRVFPEHGWSLAGVAMDTALAAYLVKPGRRSFALDVLSMEYLHRELQ 455 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 A + GS D+ + A L + R E L + E Sbjct: 456 P-AAQDGQLAFGSDDTAEAEALMAQARAVLDLGDAFTGRLAEVGAAEL-----LHEMELP 509 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + G D D + +++ A ++ ++ + L+ F Sbjct: 510 TSELLARMERAGIAADRDHLEAMEQQFAGAVQQAVKEAHAAVGHEF-NLGSPKQLQEVFF 568 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSD 302 + ++ + D L + KL L + + +D Sbjct: 569 GELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHREQAKLRVTVEGLVKTIGAD 628 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ + A+ TGR S QN+P + Sbjct: 629 GRVHTSFSQIVAA-TGRLSSTDPNLQNVPVRT------------------------DEGR 663 Query: 363 CVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T ++ F Sbjct: 664 AIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVASQVFGVER 723 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 +V E R K M L Y G ++ ++ F + + Sbjct: 724 GEVDPEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPGEARGLMETFFERFGGVRDYLQRVV 783 Query: 478 AESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 E+ + ++ A+ + GTA ++VK A + Sbjct: 784 EEARATGYTQTVLGRRRYLPDLNSDNRMRREAAERMALNAPIQGTAADIVKVAMLRVDKA 843 Query: 517 VL------QLWKDLTEGFACVVQEG 535 + ++ + + + G Sbjct: 844 ITEAGLKSRMLLQVHDEIVLEIAPG 868 >gi|226306809|ref|YP_002766769.1| DNA polymerase I [Rhodococcus erythropolis PR4] gi|226185926|dbj|BAH34030.1| DNA polymerase I [Rhodococcus erythropolis PR4] Length = 915 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 102/563 (18%), Positives = 175/563 (31%), Gaps = 106/563 (18%) Query: 33 CAY-----AWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGID 87 CAY A ++ L D ++ P L + A ++L G Sbjct: 377 CAYIAASTATPEDEAALGDWLADASQPKALHEA-------KWAIHAL---------RGRG 420 Query: 88 IPSKRWICTSVLARTNGLPS--SLKNACLALNF-SEHLTKMEEGKALIARFCKGSIDSPP 144 + LA P S L+L + L G+ ++ Sbjct: 421 WTLGGLTSDTALAAYLVRPGQRSFNLDDLSLRYLKRELRAETSGQEQLSLLDDTEQLDAE 480 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 T Q + D E K L LSD E L + I G +D Sbjct: 481 AAETAMLSAQ--AVLDLAAALDTELESIESKSL--LSDMELPLTIELAQIEATGIAVDSA 536 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------S 257 + LQ A + ++ D I + L++ LF + Sbjct: 537 HLHDLQSRFASQVADAANSAYEVIDKQI-NLGSPKQLQVVLFEELDMPKTKKTKTGYTTD 595 Query: 258 EGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L+ + H + L R+ + ++ L +AV+ DGR+ T A Sbjct: 596 AEALQGLFDKTGHPFLEHLLAHRDATRMKVT------VDGLLKAVAEDGRIHTTFNQTVA 649 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG- 373 + TGR S QN+P A +R + G Sbjct: 650 A-TGRLSSTDPNLQNIP------------------------VRNDAGREIRDGFVVGQGF 684 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ AD + IE R++A ++G++ I+AF GED++ ++AF PI++V+ E R K Sbjct: 685 DVLLTADYSQIEMRIMAHVSGDEGLIEAFNTGEDLHSFVGSRAFGVPIEEVTPELRRRVK 744 Query: 434 VMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-------- 481 M L Y G A K + + + ++ Sbjct: 745 AMSYGLAYGLSAYGLASQLKISTEEAKQQMDAYFARFGGVRDYLHAVVEQARKDGYTSTL 804 Query: 482 -------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVL 518 + ++ A+ + GTA +++K A K + +L Sbjct: 805 YGRRRYLPDLNSDNRQRREVAERAALNAPIQGTAADIIKVAMINVQKALAEAGLKSRMLL 864 Query: 519 QLWKDLTEGFACVVQEGGSISAR 541 Q+ +L E + + Sbjct: 865 QVHDELVLEVVASELEEVTALVK 887 >gi|58584982|ref|YP_198555.1| DNA polymerase I [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419298|gb|AAW71313.1| DNA polymerase I, PolA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 849 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 73/402 (18%), Positives = 134/402 (33%), Gaps = 70/402 (17%) Query: 167 VEATRELFKRLIP------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + +L +RL ++ L + + G +++ + +L + Q L Sbjct: 427 IAIHEKLKQRLFKEKLFTIYERFDKPLMKVIFNMEKNGILLNIHKLQELSDKFQQLIAVL 486 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQL-AK 275 + DI L + L LF G++ + T +L I + Sbjct: 487 ENDIYNLAGEKFNIA-SPKQLSDVLFNKMGLNKKKKLKSGSYSTNSVVLEELEIEGVEIA 545 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 IL+ S + L + V DGR+ + TGR S QN+P + Sbjct: 546 SKILDWRHLSKLKSTYTDALIKQVDPLDGRIHTNFS-TTVTATGRLSSSSPNLQNIPIRS 604 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 + + +R IA G K++ AD + IE R+LA +A Sbjct: 605 K------------------------EGNLIRQTFIAPKGYKIISADYSQIELRLLAHVAN 640 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQ----GGAKVFK 449 +AFANG+DI+ T + F D +V ++ R K + + Y G AK Sbjct: 641 VTAFKEAFANGKDIHGITAGQVFGVQKDMEVDEQLRRKAKSINFGIMYGISQFGLAKRLG 700 Query: 450 TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWMQDQ 488 + + + + + + +++ Sbjct: 701 ITIEEAAEYINYYFSCYPEIKVYMEKVVSTARQHGYVETLFGRRCFVKDINNTIPYLRQF 760 Query: 489 YPEFAVKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524 A+ L GTA +++K A + +LQ+ +L Sbjct: 761 AERAAINAPLQGTAADIIKCAMIQLFDQLKAGKIILQVHDEL 802 Score = 42.4 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 5/51 (9%) Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 Q + DI+ M I+L VHDE++ E + V LM Sbjct: 771 QGTAADIIKCAMIQLFDQLKAGKIILQVHDELLVEVENEK---VQETAKLM 818 >gi|257463768|ref|ZP_05628156.1| DNA polymerase I [Fusobacterium sp. D12] gi|317061312|ref|ZP_07925797.1| DNA polymerase I [Fusobacterium sp. D12] gi|313686988|gb|EFS23823.1| DNA polymerase I [Fusobacterium sp. D12] Length = 894 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 79/412 (19%), Positives = 147/412 (35%), Gaps = 67/412 (16%) Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 + + DV +EL L + E L + + G +ID + ++ L Sbjct: 477 DILEEDV-KEKELEAVLW---ETELPLIPVLADMERIGIKIDRKYFEAYSLELTEKLALL 532 Query: 221 DEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAK 275 ++ I + + L LFL + ++ T +L H + Q+A Sbjct: 533 EKAIWEEAGEEF-NLNSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLEHLSSQGFQIAS 591 Query: 276 DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 +L+ R + ++ + + R+ G + TGR S QN+P Sbjct: 592 NLLEYR-KLAKLKNTYVDPIPKMTGEGDRIHTCYHQIG-TVTGRLSSSDPNLQNIP---- 645 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 +R IA G KL+ D + +E RVLA ++ + Sbjct: 646 --------------------VKTEEGIRIRQGFIAREGWKLLSIDYSQVELRVLASLSKD 685 Query: 396 DWKIKAFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKT 450 + +KA+ +D++ T + F ++VS+EQR + K++ ++ Y G AK Sbjct: 686 ENLLKAYQEKQDLHSVTAKRIFELQEDEEVSREQRIMAKIINFSIIYGKTPFGLAKELGI 745 Query: 451 MASHCGLDLQQFSQNVKSTSTFED--WEQAESH-------------------HLWMQDQY 489 G ++++ + FE AE H + ++ Q Sbjct: 746 SVKDAGEYIKRYFAQYPRVAQFERQVITFAEEHGYVETYFGRRRIIDGIHSKNKMVKSQA 805 Query: 490 PEFAVKDKLIGTACELVKKAWRAKHQGVLQ-----LWKDLTEGFACVVQEGG 536 AV + GTA E++KK + + Q L + + +QEG Sbjct: 806 ERMAVNTVVQGTAAEILKKVMIKIYSWLSQKTDIHLLLQVHDELIFEIQEGK 857 Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%) Query: 598 TENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLM 651 +VQ + +IL + M K ++L VHDE++ E + L M Sbjct: 810 VNTVVQGTAAEILKKVMIKIYSWLSQKTDIHLLLQVHDELIFEIQEGKLQEYEENLIRFM 869 Query: 652 TKNP 655 + Sbjct: 870 RETI 873 >gi|118474622|ref|YP_891433.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] gi|118413848|gb|ABK82268.1| DNA polymerase I [Campylobacter fetus subsp. fetus 82-40] Length = 875 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 100/612 (16%), Positives = 199/612 (32%), Gaps = 107/612 (17%) Query: 4 LFIDIETRS-PQPLPKVGVWAYA---EQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQ 59 + D ET S + K+ +++ + + A+++ + S + Sbjct: 315 ISFDTETTSTDAKIAKIVGFSFCFNEQTSYYVPLAHSYLGVESQ-ISMNSAKWAISQIY- 372 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 + N ++ + GI+ P K + T +LA + SS+ LA Sbjct: 373 -----KGFVIGQNLKYDFRIVANNFGIE-PPKNYSDTMILAWLDDPSSSVGMDNLAKKLY 426 Query: 120 EHLTKMEEG--KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 + T E K + Y A + + + + E+ + K Sbjct: 427 NYETIKFESVVKKGEDFSSVDLQSASKYASEDAWITLKF--YKTFTNKLEESMLNIAK-- 482 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 + E L + G R++L+ + L + L +I +L + + Sbjct: 483 ----NVEFPFILTLFDMESNGIRLNLEKLRALILRNDSALRALTTEIYELCEQRF-NINS 537 Query: 238 TYALRMYLFLITGIDLVDMSE-------GTLKSILS-HSNITQLAKDLILNRLASSGSAI 289 + L LF + ++ L +L H +I ++ + L +L S+ Sbjct: 538 SKQLGSVLFDYLKLPAKKKTKTGYSTDESVLSELLDLHPSIEKILEYRELYKLQSTYC-- 595 Query: 290 LKLNTLSEAV--SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L + R+ G + TGR S QN+P + Sbjct: 596 ---EPLLNLAIKDENHRVYTNFIQTG-TATGRLSSKNPNLQNIPAR-------------- 637 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 G + +R+ +G L+ D + IE R+LA + + I+AF NG+D Sbjct: 638 ----------GNLAKDMRAVFEPKDGYSLISLDYSQIELRLLAHFSCDPALIEAFKNGDD 687 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKV----FKTMASHCGLDLQQFS 463 I+ T F + + + RAI K + L Y G+ + ++ Sbjct: 688 IHARTAISIFG----ESNTQNRAIAKSINFGLIYGMGSNKLSNELSIDKKSAKEYIDRYF 743 Query: 464 QNVKSTSTFEDWEQAESHHLWMQDQ--------------------YPEFAVKDKLIGTAC 503 + + F D + + + + + AV K G+A Sbjct: 744 KAFSTIKDFLDSIKNRAKNDGFVETLIGRKRYFDFGGATPMQLAMFEREAVNTKFQGSAA 803 Query: 504 ELVKKAWRA---------------KHQGVLQLWKDLTEGFACVVQE-GGSISARRVANVP 547 +++K A + + ++ ++ FA VQE ++ A V V Sbjct: 804 DIIKIAMIKVKDLLNDDAKMLLQIHDELIFEVRDEIAPSFAKNVQELMQTVVALNVPLVA 863 Query: 548 RLVMRRHKRDVH 559 M ++ D+ Sbjct: 864 NWGMAKNWGDLK 875 Score = 40.9 bits (94), Expect = 0.69, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 6/95 (6%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNAT---KNGYDIVLTVHDE 631 G Y + + M+ + + Q + DI+ M + ++L +HDE Sbjct: 771 GRKRYFDFGGATPMQLAMFEREAVNTKFQGSAADIIKIAMIKVKDLLNDDAKMLLQIHDE 830 Query: 632 IVSETPDTPYFS-VGTLCSLMTKNPSWAKGLPLKA 665 ++ E D S + LM A +PL A Sbjct: 831 LIFEVRDEIAPSFAKNVQELMQTVV--ALNVPLVA 863 >gi|256845000|ref|ZP_05550458.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] gi|256718559|gb|EEU32114.1| DNA polymerase I [Fusobacterium sp. 3_1_36A2] Length = 912 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 74/398 (18%), Positives = 146/398 (36%), Gaps = 64/398 (16%) Query: 172 ELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 +L+K L+ E L + + +G ID+ + +E K+++ I + Sbjct: 505 DLYKILM---KNEMPLIPVLSLMERKGIEIDVQYFKNYSLELDKELLKIEKAIYEEAGEE 561 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNIT---QLAKDLILNRLASSGS 287 + L LF+ + ++ G ++ ++ L+L+ + Sbjct: 562 F-NINSPKQLGDILFVKLNLPSGKKTKTGYSTDVMVLEDLESYGYNIARLLLDYRKLNKL 620 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++TL V + R+ T G + TGR S QN+P + Sbjct: 621 KTTYVDTLPLLVDENSRIHTTFNQIG-TATGRLSSSDPNLQNIPVKTDD----------- 668 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GK L+ D + +E RVL ++ ++ I+A+ +D Sbjct: 669 -------------GIKIREGFVAGAGKVLMSIDYSQVELRVLTSMSKDENLIEAYREEKD 715 Query: 408 IYVTTYAKAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 ++ T + FN + VS+EQR I K++ ++ Y G AK K ++++ Sbjct: 716 LHDLTARRIFNLSDSETVSREQRTIAKIINFSIIYGKTPFGLAKELKIPVKDASEYIKKY 775 Query: 463 SQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGT 501 + ++FE +S + ++ Q AV + GT Sbjct: 776 FEQYPKVTSFEREVIEFGEEHGYVKTLFGRKRYISGIDSKNKTIKSQAERMAVNTVIQGT 835 Query: 502 ACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQE 534 A E++KK K + + L + + V+E Sbjct: 836 AAEVLKKVMVKVYDVLKDKEEIALLLQVHDELIFEVEE 873 Score = 44.7 bits (104), Expect = 0.053, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 36/84 (42%), Gaps = 7/84 (8%) Query: 575 GDCSYLNTATSQLMRERTYGGKLTEN-IVQAISRDILCEGMKNA-----TKNGYDIVLTV 628 G Y++ S+ ++ ++ N ++Q + ++L + M K ++L V Sbjct: 804 GRKRYISGIDSKNKTIKSQAERMAVNTVIQGTAAEVLKKVMVKVYDVLKDKEEIALLLQV 863 Query: 629 HDEIVSETPDTPYFSVGTL-CSLM 651 HDE++ E ++ + +M Sbjct: 864 HDELIFEVEESSVEKYSEILADIM 887 >gi|313813190|gb|EFS50904.1| DNA-directed DNA polymerase [Propionibacterium acnes HL025PA1] Length = 890 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 86/555 (15%), Positives = 163/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ H++ K + + W C Sbjct: 357 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 408 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 409 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 468 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 469 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 518 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 519 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 577 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 578 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 630 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 631 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 666 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 667 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 726 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 727 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 786 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 787 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 846 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 847 LEVAKGEEEKVREIV 861 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 809 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 861 >gi|169629701|ref|YP_001703350.1| DNA polymerase I [Mycobacterium abscessus ATCC 19977] gi|169241668|emb|CAM62696.1| DNA polymerase (POL I) [Mycobacterium abscessus] Length = 902 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 109/587 (18%), Positives = 188/587 (32%), Gaps = 94/587 (16%) Query: 16 LPKVGVWA-YAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSD---LLQYLRDETVMCVAH 71 L VG + Y A A A D D T P D L ++L D H Sbjct: 339 LAVVGTYTPYDGDATAVAIASADGDG--AYIDTTT--VTPDDEAALAEWLADAARPKALH 394 Query: 72 NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGK 129 + G + LA P S L+L + + E+ Sbjct: 395 EAK---QAIHALAGRGWELGGVTSDTALAAYLVRPGQRSFALDDLSLRYLRRELRAEDDG 451 Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWL 189 + +A ++A + DVE R L L+D E + Sbjct: 452 EQQLSLLDED-GAGDAKAAQAQMLRARAVIDLADALDVELERIESAGL--LTDMELPVQR 508 Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + G +D D + LQ A ++ + + I + L++ LF Sbjct: 509 VLAGLESVGIAVDTDHLSSLQNQFASGIREAADAAYAVIGKQI-NLGSPKQLQVVLFDEL 567 Query: 250 GIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAV 299 G+ ++ TL H + L + RL + ++ L ++V Sbjct: 568 GMPKTKKTKTGYTTDADALQTLFDKTGHPFLEHLLTHRDVTRLKVT------VDGLLKSV 621 Query: 300 SSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 ++DGR+ T A+ TGR S QN+P + Sbjct: 622 AADGRIHTTFNQTIAA-TGRLSSTEPNLQNIPVRT------------------------E 656 Query: 360 ASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 A +R + G + L+ D + IE R++A ++ ++ I+AF GED++ A+AF Sbjct: 657 AGREIRDGFVVGAGYRELMTVDYSQIEMRIMAHLSADEGLIEAFNTGEDLHSFVAARAFG 716 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED 474 PID+V+ E R K M L Y G A K + Q+ + Sbjct: 717 VPIDEVTAELRRRVKAMSYGLAYGLSAYGLATQLKISNDEAKEQMDQYFSRFGGVRDYLR 776 Query: 475 ---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 +S ++ A+ + G+A +++K A Sbjct: 777 AVVDQARKDGYTSTVLGRRRYLPDLDSGDRLRREAAERAALNAPIQGSAADIIKVAMITT 836 Query: 514 HQG----------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLV 550 + +LQ+ +L A +E R+ + Sbjct: 837 DKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVRKTMGSAYPL 883 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGM----KNATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K G ++L VHDE++ E + S+ L Sbjct: 821 IQGSAADIIKVAMITTDKALRDKGLRSRMLLQVHDELLFEVAEGERESLEALVR 874 >gi|225551906|ref|ZP_03772846.1| DNA polymerase I family protein [Borrelia sp. SV1] gi|225370904|gb|EEH00334.1| DNA polymerase I family protein [Borrelia sp. SV1] Length = 908 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 84/555 (15%), Positives = 176/555 (31%), Gaps = 101/555 (18%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 L + + N F+ + K IP + T + A S + LA + Sbjct: 396 LFESNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNSKVSLDFLAEKYLM 453 Query: 121 HL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL-- 177 H K E+ F S+ ++ Y D + T LF Sbjct: 454 HKNIKYEDVIQKNDNFANISL----------------EMATSYSSEDADITFRLFNLFTK 497 Query: 178 --------IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + + E + + + G +D + + + + + +E + ++ +I+K + Sbjct: 498 KLKEDKLDKLMHEIEMPFNKVIIEMEENGIYLDKEYLKEYGKELGKELELIENEIIK-SI 556 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDLILNRL 282 GI + + LF + L + + I H +I L K + +L Sbjct: 557 GIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIENLIKYRQIAKL 616 Query: 283 ASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 S+ + + L E ++ RL + + TGR + QN+P Sbjct: 617 KSTYT-----DNLIELINYKTNRLHTSF-IQTKTATGRITSINPNLQNIP---------- 660 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R NG + AD + IE +LA ++ ++ IKA Sbjct: 661 --------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDEALIKA 706 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGL 457 F N +DI+ T +K F +++ R I K + + Y+ AK Sbjct: 707 FENNKDIHTETASKLFKIEEKEITPNLRRIAKSINFGIIYRMSDFRLAKELGITKEEAKG 766 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKD 496 + + + F + + + A+ Sbjct: 767 FINSYFDSYPKIKEFIINQINFVRNAGYSETILKRRRYIKEINSNNYLERSAAERIAINS 826 Query: 497 KLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKR 556 + G+A +++K A ++++ + + + + + P K+ Sbjct: 827 IIQGSAADIMKIAM-------VKVFNEF-KSKKMESKILLQVHDEMLIESPIEEENEVKK 878 Query: 557 DVHIVLPSSRRLVYS 571 + I++ ++ L Sbjct: 879 ILKIMMETAYTLNLP 893 >gi|315107096|gb|EFT79072.1| DNA-directed DNA polymerase [Propionibacterium acnes HL030PA1] gi|327330634|gb|EGE72380.1| DNA polymerase I [Propionibacterium acnes HL097PA1] Length = 892 Score = 208 bits (528), Expect = 3e-51, Method: Composition-based stats. Identities = 86/555 (15%), Positives = 163/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ H++ K + + W C Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R + G + L+ AD Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLSAD 668 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 849 LEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|219685277|ref|ZP_03540097.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] gi|219673373|gb|EED30392.1| DNA polymerase I superfamily protein [Borrelia garinii Far04] Length = 908 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 91/569 (15%), Positives = 174/569 (30%), Gaps = 125/569 (21%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + ID ET S + L + + E +P + Sbjct: 341 KYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIEAKGKF 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + N F+ + K IP + T + A S Sbjct: 383 YIEKHYIIQKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRD 166 + LA + H K E+ F S+ ++ Y D Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISL----------------EMATSYSCED 484 Query: 167 VEATRELFKRLIP----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 + T LF + + E + + + G +D + + + + +E Sbjct: 485 ADITFRLFNIFTEKLKGDGLDKLMHEIEMPFNKVIIEMEENGIYLDKKYLKEYGKELGKE 544 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSN 269 + ++ +I+K + GI + + LF + L + + I H + Sbjct: 545 LELIENEIIK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHES 603 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQ 328 I L K + +L S+ + + L E ++ RL + + TGR + Q Sbjct: 604 IENLIKHRRIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTRTATGRITSINPNLQ 657 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P +R NG + AD + IE + Sbjct: 658 NIP------------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAI 693 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG---- 444 LA ++ ++ IKAF N +DI+V T +K F T +++ R I K + + Y+ Sbjct: 694 LAHLSQDEALIKAFENNKDIHVETASKLFKTEEKEITPNLRRIAKSINFGIIYRMSDFRL 753 Query: 445 AKVFKTMASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHL 483 AK + + + F ++ S++ Sbjct: 754 AKELGITKEEAKGFINSYFDSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNY 813 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + A+ + G+A +++K A Sbjct: 814 LERSAAERIAINSAIQGSAADIMKIAMIK 842 Score = 51.7 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 + +Q + DI+ M K I+L VHDE++ E+P V + +M Sbjct: 824 INSAIQGSAADIMKIAMIKVFNEFKSKKMESKILLQVHDEMLIESPIKEENEVKKILKIM 883 Query: 652 TKNPSWAKGLPLKA 665 + ++ LPL+A Sbjct: 884 MET-AYTLNLPLRA 896 >gi|269958395|ref|YP_003328182.1| DNA polymerase I [Anaplasma centrale str. Israel] gi|269848224|gb|ACZ48868.1| DNA polymerase I [Anaplasma centrale str. Israel] Length = 849 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 134/397 (33%), Gaps = 69/397 (17%) Query: 169 ATRE--LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 RE L RL + ER L + + + G +D +++ +L + L+ +I Sbjct: 432 VMREKLLSDRLFTVYYQLERPLVRVLYEMQEVGIEVDTEILKQLSRDFHGSIRSLEREIY 491 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLIL 279 L + L LF G+ + + +T+LA D +L Sbjct: 492 GLAGCKF-NVASARQLGKLLFERMGLSSSTKKMPSGSYSTNAEVLTELAAEGVEIADKVL 550 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 S ++ L V + R+ + A+ TGR S QN+P + + Sbjct: 551 KWRHFSKLKSTYVDALLRQVETGTERVHTSYSMV-ATATGRISSSNPNLQNIPIRSK--- 606 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +R +A G KLV AD + +E +++A IAG Sbjct: 607 ---------------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAF 645 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASH 454 AFA G+DI+ T + F + E R K + + Y AK Sbjct: 646 RDAFAEGKDIHQVTAQQIFGDDVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQE 703 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFA 493 ++Q+ ++ + + +A + ++ A Sbjct: 704 ATQYVEQYFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYVPGINSAQHAIRGFAERAA 763 Query: 494 VKDKLIGTACELVKKAWRAKHQG------VLQLWKDL 524 + + GTA ++VKKA +LQ+ +L Sbjct: 764 INAPIQGTAADVVKKAMINLRDKLEVGTIILQVHDEL 800 Score = 47.4 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 602 VQAISRDILCEGMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTL-CSLM 651 +Q + D++ + M N I+L VHDE++ E P++ +V L +M Sbjct: 768 IQGTAADVVKKAMINLRDKLEVGTIILQVHDELLVEVPESHVDNVAQLMKEVM 820 >gi|313682518|ref|YP_004060256.1| DNA polymerase i [Sulfuricurvum kujiense DSM 16994] gi|313155378|gb|ADR34056.1| DNA polymerase I [Sulfuricurvum kujiense DSM 16994] Length = 909 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 85/495 (17%), Positives = 149/495 (30%), Gaps = 93/495 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT---KM 125 + HN F+ + LG+D + T VLA SL L+ + H K Sbjct: 403 IGHNIKFDLHFVTRFLGVD-RLSIYADTMVLAWLTDSSRSLAMDNLSQSLLHHEMIHFKD 461 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS---- 181 K F +I+ +Y D T L++ L Sbjct: 462 TVKKGEN--FASVAIEDA----------------CKYAGEDAYITYRLYEVLKEQLLLKG 503 Query: 182 ---------DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII 232 D E L + G +D ++ ++ +A E L E I + Sbjct: 504 GQEALDEAFDVEFPFTLTLLGMEKEGIAVDTAVLELFKKEVAHEIATLTEQIHSACG-TV 562 Query: 233 RSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF G+ ++ T + +L ++L Sbjct: 563 FNLNSPKQLGVILFETLGLPHGKKTKTGYSTDEQVLEGLQFEHPMIPMLLQYREYHKLYS 622 Query: 290 LKLNTLSEAVSSD--GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 + L +D R+ + G + TGR S QN+P Sbjct: 623 TYIEPLIALAQNDPSSRIYTSFVQTG-TATGRLSSKNPNLQNIP---------------- 665 Query: 348 NRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A GKKL+ D + IE R+LA + + + AF G D Sbjct: 666 --------VKTALGMRIREAFVAPRGKKLIGIDYSQIELRLLAHFSEDTVLVNAFNEGHD 717 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK----VFKTMASHCGLDLQQFS 463 I++ T F + + +R I K + L Y G K ++++ Sbjct: 718 IHMQTAIALFG---AEDASRKRNIAKTVNFGLLYGMGQKKLSDTLGITTKEAKEIIERYF 774 Query: 464 QNVKSTS-TFEDWEQAESHHLWM-------------------QDQYPEFAVKDKLIGTAC 503 + S F + ++ + Y +V G+A Sbjct: 775 ETFPSVKGYFNGIVEQAKEIGYVETLLHRRRYFDFGSATPMLKAAYERESVNTVFQGSAS 834 Query: 504 ELVKKAWRAKHQGVL 518 +L+K + + Sbjct: 835 DLIKLSMNKIDTMIR 849 Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 15/125 (12%), Positives = 41/125 (32%), Gaps = 12/125 (9%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCS-YLNTATSQLMRERTYGGKL 597 A+ + K + ++ ++ + Y + Y + ++ M + Y + Sbjct: 765 EAKEIIERYFETFPSVKGYFNGIVEQAKEIGYVETLLHRRRYFDFGSATPMLKAAYERES 824 Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFS-----VGT 646 + Q + D++ M ++L +HDE++ E V Sbjct: 825 VNTVFQGSASDLIKLSMNKIDTMIRTEGLRARMLLQIHDELIFEVDADVAEEYAVRFVDA 884 Query: 647 LCSLM 651 + ++ Sbjct: 885 MERIL 889 >gi|323339592|ref|ZP_08079866.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] gi|323092987|gb|EFZ35585.1| DNA-directed DNA polymerase I [Lactobacillus ruminis ATCC 25644] Length = 885 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 75/498 (15%), Positives = 157/498 (31%), Gaps = 83/498 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L ++L ++ + + K+ + I ++ +L L N Sbjct: 365 EPLREFLENKNKTLDVFDGKKTYVSLKR---LGIEAESIDFDLLLVSYL-----LNNTDN 416 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 + + + K F S D + + F E+ + V A L Sbjct: 417 SNDLGQLCQKQG-------YFGVKSDDEVYGKGAKKEICAD-ETFFEHLRSKVFAIAFLK 468 Query: 175 KRLI----------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 ++L+ + ER L ++ + G + D + + + ++ L+ I Sbjct: 469 QKLMQKLKDNSQDHLYFEIERPLSIVLAKMEIAGIKADKETLETMGSRFKEKISDLESLI 528 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNR 281 + + L LF G+ ++ T +L + +++L R Sbjct: 529 YQEAGETF-NINSPKQLGTILFDKLGLPGAKKTKTGYSTAVGVLEKLRGNDIVDNVLLYR 587 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + ++ L + + D ++ + TGR S QN+P Sbjct: 588 QFAKLKST-YIDGLIKVMDQDEKVHTR-YTQTLTTTGRLSSVEPNLQNIP---------- 635 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIK 400 +R I S+ G ++ +D + IE RVLA I+ ++ K Sbjct: 636 --------------VRLEEGRKIRQAFIPSHQGWEIFSSDYSQIELRVLAHISKDENMQK 681 Query: 401 AFANGEDIYVTTYAKAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 AF + DI+ T K F D+V+ R K + + Y G A+ Sbjct: 682 AFKDDFDIHANTAMKIFGLSSPDEVTPNMRRQAKAVNFGIVYGISDFGLAQSIGCRRDQA 741 Query: 456 GLDLQQFSQNVKSTSTFE---------------------DWEQAESHHLWMQDQYPEFAV 494 ++ + ++ + E S + + A+ Sbjct: 742 KTFMETYFESFPGVKRYMTEIVELARNQGYVETLFKRRRYLEGIRSKNFNQRSFAERTAM 801 Query: 495 KDKLIGTACELVKKAWRA 512 + G+A +++K A Sbjct: 802 NTPIQGSAADIIKVAMIK 819 Score = 45.1 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 8/117 (6%) Query: 540 ARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGKLT 598 A+ KR + ++ +R Y + YL S+ +R++ + Sbjct: 741 AKTFMETYFESFPGVKRYMTEIVELARNQGYVETLFKRRRYLEGIRSKNFNQRSFAERTA 800 Query: 599 ENI-VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 N +Q + DI+ M + ++L VHDE++ E P+ + L Sbjct: 801 MNTPIQGSAADIIKVAMIKMQETLEKEELKARMLLQVHDELIFEAPEEEIPVLEKLV 857 >gi|283769054|ref|ZP_06341960.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] gi|283104411|gb|EFC05788.1| DNA-directed DNA polymerase [Bulleidia extructa W1219] Length = 862 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 86/524 (16%), Positives = 168/524 (32%), Gaps = 81/524 (15%) Query: 78 ILFKKTLGIDIPSKRWICTSVLARTNGLPSS---LKNACLALNFSEHLTKMEE-GKALIA 133 I K L + W TS T + + L+ + LNFS+ + + I Sbjct: 345 ISLKDYLKDTSYPQAWNETSYRRTTYDIKRNAHLLEKNGIYLNFSDDVMIYTSLVDSTIT 404 Query: 134 RFCKGSIDSPPYDCTRANHVQAWQLFGEYCK---------RDVEATRELFKRLIPLS--- 181 F K S + R V + E + ++ +E + +L ++ Sbjct: 405 SFKKLKEKSEWQETIRYEEVYKKEELIEKNQAAYCASVLRNLIQVDQEYYPKLKEMNLIS 464 Query: 182 ---DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 D E L + + + +G R + ++ + E + ++L++ I K+ + Sbjct: 465 LYRDVELPLVTILKDMEQKGIRCEEKVLDHIAEGTLAKIQELEKAIYKVVGHEF-NLNSP 523 Query: 239 YALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 L + L+ I + + + D++ R S L + Sbjct: 524 KQLAVVLYDELQILKGKKRSTAAGELEKIQGLYTVVDDILAYR-KYSKLYSTYAEGLKKY 582 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 + +DG++ A++TGR S QN+ Sbjct: 583 IQADGKIHTVYN-QAATQTGRLSSSEPNLQNIS------------------------VRD 617 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R + G LV +D +E R+LA +A IKAF N DI+ T F+ Sbjct: 618 EEGREIRKAFLPEEGCVLVSSDYHQVELRILAHMAKVPNLIKAFQNEMDIHSQTAMDLFD 677 Query: 419 TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE- 473 +++V+ QR K + + Y G A ++++ + T+ Sbjct: 678 CSLEEVTPLQRRQAKTVNFGIVYGISDFGLASQLGVSRFEARDFIEKYYRVYPEIKTYME 737 Query: 474 --------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA- 512 + + + +Q A+ + GTA +L+K A Sbjct: 738 SVIHFCKENGYVETLCHRRREIPEIHDKNKQIQAFGERAAMNAPIQGTAADLIKLAMIQV 797 Query: 513 ---------KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 K + +LQ+ +L E ++ Sbjct: 798 REMIDENHLKAKMILQVHDELIFNVPLEEVEIMKTIIQKGMETA 841 >gi|291296659|ref|YP_003508057.1| DNA polymerase I [Meiothermus ruber DSM 1279] gi|290471618|gb|ADD29037.1| DNA polymerase I [Meiothermus ruber DSM 1279] Length = 1273 Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 89/477 (18%), Positives = 159/477 (33%), Gaps = 49/477 (10%) Query: 132 IARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLD 191 + R+ G S P + +A H W+ + + L++++ E+ L + Sbjct: 401 VRRYGAGDWGSDPGERAQAAHT-LWETLQSRIGENPKIEW-LYQQI------EKPLSAVL 452 Query: 192 QTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGI 251 I RG ++ + +L+L E +A+E L+ +I +L + L + L+ + Sbjct: 453 ARIEARGISLNAEYLLQLSEELAKEISYLEAEIHRLAGRSF-NVNSRDQLEVVLYDELKL 511 Query: 252 DLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRL 305 T K + S + +L + + + KL + L + + GRL Sbjct: 512 SAPGRKTQTGKRSTAASALEELLGQHPIIERILTYRELTKLKSTYLDPLPKLIHPKTGRL 571 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 G + TGR S QN+P + +R Sbjct: 572 HTRFNQTG-TATGRLSSVDPNLQNIPVRT------------------------EIGRRIR 606 Query: 366 SCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVS 425 A+ G +LVVAD + IE RVLA ++G++ I F G DI+ T A F DKV Sbjct: 607 KAFRAAPGMRLVVADYSQIELRVLAHLSGDENLINVFREGRDIHTQTAAWMFGLEPDKVG 666 Query: 426 KEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM 485 EQR K + G G +Q ++ D + + Sbjct: 667 AEQRRAAKCLVEGTKVATGRGWLPIEQVRVGDCVQT-DGKMRRVVGLLDNGIQPTIRIST 725 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWR------AKHQGVLQLWKDLTEGFACVVQEGGSIS 539 Q + I + WR A Q VL+ E +I+ Sbjct: 726 QRGFELRGTPHHRIRVVAKDGAVVWRQLQHLQAGDQVVLRRHGAFGYCNDLPPLEPVAIT 785 Query: 540 ARRVANVPRLVMRRHKRDV--HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYG 594 + P+ + ++ + + ++ R + + L G Sbjct: 786 RHKPLPWPQHLDQKMALWLGYMVAEGTAIRAKQHRERYGVVLMGLGRRDLDVLDEVG 842 Score = 50.5 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 9/133 (6%) Query: 538 ISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGGK 596 A + + + VL +R+ Y + G ++ S++ R + Sbjct: 1129 AEAEGFIERYFASYPKVREWIERVLADARQTGYVETMFGRRRFVADLGSRVRSVREAAER 1188 Query: 597 LTENI-VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC-SL 650 + N+ VQ + D++ M +VL VHDE++ E P +V + + Sbjct: 1189 MAFNMPVQGTAADLMKLAMVKLQPELEPLEAHLVLQVHDELLVEAPADKAEAVAGVVREV 1248 Query: 651 MTKNPSWAKGLPL 663 M + +WA +PL Sbjct: 1249 MQQ--AWALAVPL 1259 Score = 40.5 bits (93), Expect = 0.92, Method: Composition-based stats. Identities = 17/143 (11%), Positives = 38/143 (26%), Gaps = 33/143 (23%) Query: 434 VMELALGYQGGAKVFK----TMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH------- 482 + + Y A + ++++ + + + A++ Sbjct: 1106 TINFGVLYGMSAHRLSNELSISYAEAEGFIERYFASYPKVREWIERVLADARQTGYVETM 1165 Query: 483 --------------LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG--------VLQL 520 +++ A + GTA +L+K A VLQ+ Sbjct: 1166 FGRRRFVADLGSRVRSVREAAERMAFNMPVQGTAADLMKLAMVKLQPELEPLEAHLVLQV 1225 Query: 521 WKDLTEGFACVVQEGGSISARRV 543 +L E + R V Sbjct: 1226 HDELLVEAPADKAEAVAGVVREV 1248 >gi|212716113|ref|ZP_03324241.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] gi|212661480|gb|EEB22055.1| hypothetical protein BIFCAT_01027 [Bifidobacterium catenulatum DSM 16992] Length = 950 Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 170/498 (34%), Gaps = 81/498 (16%) Query: 95 CTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRA 150 + LA P + A H+ + E F + D Sbjct: 455 FDTKLAGYLVHPDFHADTLEQAAAHFLDLHVEEQSESATQGTLDFDEPEESVQQKDDQLP 514 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H R++ + + ++ L E + + + G ++D++ ++ ++ Sbjct: 515 RHTAI----VGLLARNLSNSLDQREQFALLESVEIPVSRVLYGMEHAGAQVDMNRLMNMR 570 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLK 262 E +A + E + + + + L+ LF G+ ++ L+ Sbjct: 571 EQLASDANHAQETAWQYAGKRV-NLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAALQ 629 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGR 319 ++ S A + L LK + TL +A + SDGR+ T + A+ TGR Sbjct: 630 TLRDRSYDNDSACQFLDALLLHREKNKLKQIVQTLIDATNGSDGRIHTTFEQTVAA-TGR 688 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVV 378 S QN+P + A +RS + G + L+ Sbjct: 689 LSSVDPNLQNIPNR------------------------DPAGREIRSAFVPGEGFESLLS 724 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 +D + +E R++A ++G++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 725 SDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITSDQRSHVKAMSYG 784 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474 L Y G ++ QQ+ + + Sbjct: 785 LAYGLSTYGLSQQLGIKPGEAESLKQQYFATFGKVHEYLESLVSTAREKGYTETIYGRRR 844 Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKD 523 + +S + ++D A+ + G+A +++K A +LQ+ + Sbjct: 845 YFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRADDALHESGLASRIILQIHDE 904 Query: 524 LTEGFACVVQEGGSISAR 541 L A E + + Sbjct: 905 LVVEIAPGEAEQATALVK 922 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 9/70 (12%) Query: 602 VQAISRDILCEGMKNATKNGY------DIVLTVHDEIVSE-TPDTPYFSVGTLCSLMTKN 654 +Q + DI+ M A + I+L +HDE+V E P + + M Sbjct: 869 IQGSAADIMKIAMIRADDALHESGLASRIILQIHDELVVEIAPGEAEQATALVKDAMEHA 928 Query: 655 PSWAKGLPLK 664 A +PL Sbjct: 929 VDMA--VPLD 936 >gi|225351885|ref|ZP_03742908.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157132|gb|EEG70471.1| hypothetical protein BIFPSEUDO_03488 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 932 Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 170/498 (34%), Gaps = 81/498 (16%) Query: 95 CTSVLARTNGLPSSLKNA---CLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRA 150 + LA P + A H+ + EG F + + D Sbjct: 437 FDTKLAGYLVHPDFHADTLEQAAAHFLDLHIEEQSEGATQGTLDFDEPDDSAQRNDNQLP 496 Query: 151 NHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 H R + + + ++ L E + + + G ++D++ ++ ++ Sbjct: 497 RHTAI----VGLLARKLADSLDQREQFSLLESVEIPVSRVLYGMEHAGAQVDMNRLMSMR 552 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLK 262 E +A + E + + + + L+ LF G+ ++ L+ Sbjct: 553 EQLAADANYAQETAWQYAGERV-NLQSPKQLQKILFEDMGLKPTKKTKTGSYTTNAAALQ 611 Query: 263 SILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGR 319 + S A + L LK + TL +A + SDGR+ T + A+ TGR Sbjct: 612 VLRDRSCGNDRACQFLDALLLHREKNKLKQIVQTLIDATNRSDGRIHTTFEQTVAA-TGR 670 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVV 378 S QN+P + A +RS + G + L+ Sbjct: 671 LSSVDPNLQNIPNR------------------------DPAGREIRSAFVPGEGFESLLS 706 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 +D + +E R++A ++G++ I+AF +G D + + + P+D+++ +QR+ K M Sbjct: 707 SDYSQVELRIMADLSGDEALIEAFRSGRDFHKYVASLVYGVPVDEITPDQRSHVKAMSYG 766 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474 L Y G ++ +Q+ + + Sbjct: 767 LAYGLSTYGLSQQLGIKPGEAESLKRQYFATFGKVHEYLESLVSSAREKGYTETIYGRRR 826 Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKD 523 + +S + ++D A+ + G+A +++K A +LQ+ + Sbjct: 827 YFPGLKSPNRAVRDAAERAALNAPIQGSAADIMKIAMIRADDALREAGLASRIILQIHDE 886 Query: 524 LTEGFACVVQEGGSISAR 541 L A E + + Sbjct: 887 LVVEVAPGEAERVTALVK 904 Score = 44.3 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 851 IQGSAADIMKIAMIRADDALREAGLASRIILQIHDELVVEVAPGEAERVTALVK 904 >gi|224436959|ref|ZP_03657940.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313143431|ref|ZP_07805624.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] gi|313128462|gb|EFR46079.1| DNA polymerase I [Helicobacter cinaedi CCUG 18818] Length = 913 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 79/479 (16%), Positives = 162/479 (33%), Gaps = 65/479 (13%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN F+ L +TLG++ K + +L+ + + L + H + Sbjct: 409 IGHNLKFDFSLIYRTLGLEHIGK-IYDSMILSWLYDSIAPVGLDKQMLKWFNHTMISFDS 467 Query: 129 KALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERD 186 F + +I + T+ A F Y + + E + + ++ L+ E Sbjct: 468 VVPKGENFSQVNIIT----ATQYAAEDAAATFKLYHRLEDEFHKREWGGILELAQNLEYP 523 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 + + G R+D+ L+ L++ ++ +L + I L + L LF Sbjct: 524 FIKVLMDMELEGIRVDIGLLEILKDKSSEHIAELSQKIYDLCGETF-NLNSPQQLAHILF 582 Query: 247 LITGIDLVDMSEGTL---KSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEA--VSS 301 G+ +G L + L + DLIL+ S+ + L + Sbjct: 583 ENLGLKPGRSVKGGLSTDEKTLLAIIDSHPVIDLILDYRESNKLKSTYIEPLLRLGRTNE 642 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 R+ + G + TGR S QN+P Sbjct: 643 THRIHTSFLQNG-TATGRLSSKSPNLQNIP------------------------VRREEG 677 Query: 362 DCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R I+ G L+ D + IE R+LA + +++F +DI+ T A+ F Sbjct: 678 RKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDPSLVESFMQDKDIHFETAARLFG--- 734 Query: 422 DKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTF----- 472 ++ + ++R I K + L Y G ++ + ++ + + F Sbjct: 735 EQEAMQKRFIAKSINFGLIYGMGSKKLSQTLQIPLKQAKEYIESYFALFPTIKDFLNAQE 794 Query: 473 ---------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 + + +M+ + + G+A +L+K + H+ Sbjct: 795 EFLLENGYSQTLLGHRRYFDFKRATDFMKANFLREGINSIFQGSAADLIKLSMCEIHKR 853 Score = 45.9 bits (107), Expect = 0.020, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%) Query: 598 TENIVQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 +I Q + D++ M K K+ ++L VHDE++ E P + + +M Sbjct: 831 INSIFQGSAADLIKLSMCEIHKRYAKSDLKMLLQVHDELIFEAPSERAENYAKEVADIM 889 >gi|311113501|ref|YP_003984723.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] gi|310944995|gb|ADP41289.1| DNA-directed DNA polymerase I [Rothia dentocariosa ATCC 17931] Length = 955 Score = 207 bits (526), Expect = 5e-51, Method: Composition-based stats. Identities = 74/434 (17%), Positives = 148/434 (34%), Gaps = 76/434 (17%) Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 R + + +L D E L + + G + L+ +L + + Sbjct: 517 HELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMA 576 Query: 221 DEDIVKLTDGIIR----SSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSN 269 +E L G + + L+ LF G+ + ++ +L+ + Sbjct: 577 EEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVS 636 Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 ++ A + LK + L +A +DGR+ T Q A+ TGR S Sbjct: 637 PESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVADGRVHTTFQ-QNAASTGRLSSTAPNL 695 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-------NGKKLVVAD 380 QN+P + +R I + + L+ AD Sbjct: 696 QNIPIRT------------------------DEGRRIRGAFIVAPKILDGVEYEGLLTAD 731 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++ +A ++ I+A+A+GED++ ++ F ++V+ + RA K M L Sbjct: 732 YSQIEMRIMVHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLA 791 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------- 481 Y G AK + G + + F ++H Sbjct: 792 YGLSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGRRRSL 851 Query: 482 ------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFA 529 + ++ A+ + GTA +++K A H+ + ++ + + Sbjct: 852 PDLDSPNRTRREAAERAALNAPIQGTAADIIKIAMINIHRRLQEENLKTRMLLQVHDEII 911 Query: 530 CVVQEGGSISARRV 543 V G +A+R+ Sbjct: 912 LEVAAGEREAAQRI 925 Score = 42.4 bits (98), Expect = 0.22, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654 +Q + DI+ M N + ++L VHDEI+ E + + M++ Sbjct: 874 IQGTAADIIKIAMINIHRRLQEENLKTRMLLQVHDEIILEVAAGEREAAQRILVEEMSEA 933 Query: 655 PS 656 Sbjct: 934 IE 935 >gi|269792689|ref|YP_003317593.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100324|gb|ACZ19311.1| DNA polymerase I [Thermanaerovibrio acidaminovorans DSM 6589] Length = 836 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 87/412 (21%), Positives = 151/412 (36%), Gaps = 71/412 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDG--IIRSSRQ 237 ++ + L + + G +D++ + L+E + + L+E I + ++S +Q Sbjct: 435 VTRVDHPLSAVLVDMEREGIGLDVEGLRGLRERLERALGALEEGIAREAGAQVNLQSPKQ 494 Query: 238 TYALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDL-ILNRLASSGSAILKL--- 292 L LF G+ V ++ L + +++L + L + + I KL Sbjct: 495 VAWL---LFERLGLPPVKRTKTGLSTDVGVLEELSRLPEPLGRVPSMILEHREISKLITA 551 Query: 293 --NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 N E S G +R T G + TGR S QNLP+ Sbjct: 552 FVNPFLEQ-GSSGVIRSTFDQTG-TGTGRLSSRDPNVQNLPQ------------------ 591 Query: 351 ETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 G + R C++ G V AD + IE RVLA ++GE+ I+AF G D++ Sbjct: 592 ------FGHWAVEFRRCLVPVEEGNVFVSADYSQIELRVLAHLSGEERLIRAFEEGADVH 645 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQN 465 T + + VS EQR KV+ L Y G A+ S ++++ Sbjct: 646 ARTASWIYGVDPQAVSPEQRRFAKVVNFGLLYGMGAHGLAQRMGVSRSEAAEVMERYFSA 705 Query: 466 VKSTSTFEDWEQAESHHLWMQDQ---------------------YPEFAVKDKLIGTACE 504 + F ++ A+ + G+A + Sbjct: 706 LPGVREFTRRMVEQAKARGYAATLMGRVRPLSEVSTVEGRGAGAIDRVAINTPIQGSAAD 765 Query: 505 LVKKAWRAKHQ----GVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 + +KA H+ G ++ + + C V EG + RVA + R VM Sbjct: 766 IARKAMVELHRALAGGDCRMVLQVHDSIVCSVPEGMAS---RVAELMREVME 814 >gi|152966895|ref|YP_001362679.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] gi|151361412|gb|ABS04415.1| DNA polymerase I [Kineococcus radiotolerans SRS30216] Length = 933 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 96/589 (16%), Positives = 177/589 (30%), Gaps = 95/589 (16%) Query: 18 KVGVWAYAE----QAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAH- 71 + G+ E +T A A D D L L D VAH Sbjct: 351 RTGLHVTGEWSRGSGEVTGLALAGADGVAAWIDPLTLEPADEQALAAWLADPDRPKVAHD 410 Query: 72 -----NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKME 126 ++L R + +D ++C + ++++ L + Sbjct: 411 VKGPSHALLARGWTLAGVVLDTALAAYLCRPDQRSYDLADLAVRHLKRELRAEGSTGGAD 470 Query: 127 EGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERD 186 RA L + A E L + E Sbjct: 471 ADVDEQLTLDGSDGPVGGDQQARAEEGMVRALAISELAGVLAAELEERGGTRLLHEVELP 530 Query: 187 LWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLF 246 L + G +D +L+ L+ A+ + ++ I + L+ LF Sbjct: 531 LVAVLAAQERVGIAVDDELLADLEARFAERVAQAQAQAYEVIGTEI-NLGSPKQLQTVLF 589 Query: 247 LITGIDLVDMSEGTLKS----------ILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296 + ++ + H + L + +RL + + L Sbjct: 590 EQLDMPKTKRTKTGYTTDADALAALFVKTEHPFLAHLLEHRDASRLRQT------VEGLR 643 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 ++V+ DGR+ T Q A+ TGR S QN+P + Sbjct: 644 KSVADDGRIHTTYQQMIAA-TGRLSSTDPNLQNIPIRT---------------------- 680 Query: 357 LGLASDCVRSCII------ASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R + A +G + L+ AD + IE R++A ++G++ I AF +GED++ Sbjct: 681 --EEGRRIREAFVVGPDAGAGDGYECLLTADYSQIEMRIMAHLSGDEGLISAFTSGEDLH 738 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 ++ F V+ E RA K M L Y G + K + ++ Q Sbjct: 739 RFVGSRVFGVAPVDVTPEMRAKIKAMSYGLAYGLSAFGLSNQLKISTEEAKDLMDEYFQR 798 Query: 466 VKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACE 504 + E+ + ++ A+ + G+A + Sbjct: 799 FGGVRDYLHGVVEEARRTGWTETIMGRRRYLPDLASDNRQRREMAERMALNAPIQGSAAD 858 Query: 505 LVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARRV 543 ++K A G +LQ+ +L A +E R Sbjct: 859 IIKVAMLDLDAGLREAGLRSRLLLQVHDELVLEVARGEREPLEELVRAT 907 >gi|309803215|ref|ZP_07697312.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] gi|308164723|gb|EFO66973.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 11V1-d] Length = 883 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 72/537 (13%), Positives = 162/537 (30%), Gaps = 88/537 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107 + L + L D+ + + + ++ LGI + +LA G Sbjct: 362 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 418 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L N+ +GK + + T+ + + + Sbjct: 419 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 470 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 471 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 528 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283 + L + LF + ++ ++ + + + D++ R Sbjct: 529 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 587 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + +N L + + +DG++ + TGR S QN+P Sbjct: 588 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 633 Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + L D + +E RVLA ++ E ++AF Sbjct: 634 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 681 Query: 403 ANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 G DI+ T K F +D+V+ R K + + Y G AK Sbjct: 682 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 741 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + + + + + + ++ A+ Sbjct: 742 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 801 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + G+A +++K A K + +LQ+ +L + ++ Sbjct: 802 PIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKI 858 >gi|32423736|gb|AAP81263.1| DNA polymerase type I [Bacteroidetes bacterium endosymbiont of Bemisia tabaci] Length = 939 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 97/581 (16%), Positives = 169/581 (29%), Gaps = 106/581 (18%) Query: 15 PLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLR----DETVMCVA 70 + G+ + A + A+A+ A L L+ V+ V Sbjct: 368 DIATTGMDPHL--ADLLGIAFAYQPGTAYYIALPPNKAAAQPFLALLQPLFQRTDVLKVG 425 Query: 71 HNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKA 130 HN I+ ++ G+ I + T + +GL +A + HLT + E Sbjct: 426 HNLKNALIVMQRH-GLSIAPPLF-DTMI---AHGL--------VAADMDHHLTTLSE--- 469 Query: 131 LIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-------- 182 S PP + + Y + ++ ++ Sbjct: 470 --QYLNHRSYLKPPNRAEKESEGI-----KNYAGEGADLVLHIYPKIAQALREHKVATLF 522 Query: 183 --GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 E L + + G IDL + L + K L E I L + Sbjct: 523 YRVEMPLVQVLVAMELAGVSIDLPFLATLGSEMEPTTKALKEKIYTLAQTTF-NIDSPKQ 581 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295 L + LF + M + + + +L+K + L KL + L Sbjct: 582 LGVVLFEKLALHTKPMKTKGGQYATGEAILAKLSKVHPIVPLIMEYRTWQKLRSTYVDAL 641 Query: 296 SEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 + D RL T + TGR S Q +P + Sbjct: 642 PTLLHPIDQRLHATYHQTVVT-TGRLSATGPNLQQIPIRT-------------------- 680 Query: 355 DPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R I G L AD + IE R++A A + I AF + +DI+ T Sbjct: 681 ----PTGRALRKAFIPHQKGDCLFSADYSQIELRIMAAYAQDTTMIMAFQSDQDIHQITA 736 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF-----KTMASHCGLDLQQFSQNVKS 468 K F T I V +E R K+ + Y ++ + + Sbjct: 737 QKLFKTVI--VDQEMRQKAKIANFGIIYGISPFGLSERMEHLSRKEAAELIEAYFEAFPG 794 Query: 469 TSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVK 507 T+ D + + + A+ + G+A E++K Sbjct: 795 IKTYIDDSIAHAEANGYVRTLLGRKRFLPDLYASNPTTRGVARRNAINTPIQGSAAEMIK 854 Query: 508 KA------WRAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A W KH+ +L + + V + Sbjct: 855 LAMIHIQDWLEKHKLSTKLIIQVHDELVFNVPRSEIADIQH 895 >gi|315098282|gb|EFT70258.1| DNA-directed DNA polymerase [Propionibacterium acnes HL059PA2] Length = 892 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 87/555 (15%), Positives = 165/555 (29%), Gaps = 103/555 (18%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ V H++ K + + W C Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKVMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLP---SSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRAN 151 + LA P + + + + + L + EE F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEAEENSDQAMLDFGEDHFAESMERAVAVT 470 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 + + E L D E + ++ G +D D+ L+ Sbjct: 471 RLADVMEKEVEARGGAEL----------LHDVEMGVQRCLISMERAGIAVDTDIFEGLRS 520 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK--------- 262 + + E + I S L+ LF + ++ Sbjct: 521 EFDERVTRAQEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALAGL 579 Query: 263 -SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWS 321 H + L + +L + ++ L + + DGR+ T + TGR S Sbjct: 580 YETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGRLS 632 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVAD 380 QN+P + +R ++ G + L+ AD Sbjct: 633 SKDPNLQNIPMRT------------------------EEGRRIREGVVVGEGYESLLSAD 668 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M L Sbjct: 669 YSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYGLA 728 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL------------- 483 Y G + K + + + + ++ Sbjct: 729 YGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRRYL 788 Query: 484 --------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFA 529 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 789 PDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELI 848 Query: 530 CVVQEGGSISARRVA 544 V +G R + Sbjct: 849 LEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|312874207|ref|ZP_07734241.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] gi|311090277|gb|EFQ48687.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2052A-d] Length = 883 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 73/536 (13%), Positives = 162/536 (30%), Gaps = 88/536 (16%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSS 108 L + L D+ + + + ++ LGI + +LA G Sbjct: 363 PLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLGV 419 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L N+ +GK + + T+ + + + Sbjct: 420 LANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP------ 470 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 471 -ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA 529 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ + + + D++ R S Sbjct: 530 GEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQIS 588 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + +N L + + +DG++ + TGR S QN+P Sbjct: 589 KIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------- 633 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + L D + +E RVLA ++ E ++AF Sbjct: 634 -----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682 Query: 404 NGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 G DI+ T K F +D+V+ R K + + Y G AK Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 + + + + + + ++ A+ Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + G+A +++K A K + +LQ+ +L + I ++ Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKI 858 >gi|116670610|ref|YP_831543.1| DNA polymerase I [Arthrobacter sp. FB24] gi|116610719|gb|ABK03443.1| DNA polymerase I [Arthrobacter sp. FB24] Length = 955 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 84/509 (16%), Positives = 169/509 (33%), Gaps = 63/509 (12%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 D D + Q A ++L LRD V H + + + Sbjct: 414 VRDGAAVYIDLSGQDAEAENVLAAWLRDPEAPKVMHGFKAALKALSA---RGLELEGVVD 470 Query: 96 TSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 + ++ P L E +A+ + + D A + Sbjct: 471 DTSISGYLIQPDRRTYELAEL---AQHHLNIEISTAVAKAGQLELSFDGDDSAAAGELVH 527 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 R EA + K LS E + + + G ID+ + + +A+ Sbjct: 528 AAAVVHALSRYFEAELKERKAEELLSTLELPVSQVLADMELAGIAIDMQRMDEQLADLAK 587 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--TLKSILSHSNITQL 273 E + + L+ LF + + T + + + + Sbjct: 588 VIDNAQELAFAAIGHEV-NLGSPKQLQTVLFDELQLPKTKKIKSGYTTDAASLKNLLEKT 646 Query: 274 AKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 + ++ +A S+ L+ L +L ++V+ DGR+ T A+ TGR S QN+P Sbjct: 647 GHEFLVQLMAHRESSKLRQMLESLKKSVAEDGRIHTTYAQNVAA-TGRISSNNPNLQNIP 705 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLA 390 + VR + S G + L+ AD + IE R++A Sbjct: 706 IRS------------------------EEGRRVRGIFVVSEGYECLLSADYSQIEMRIMA 741 Query: 391 WIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAK 446 ++G+ I+A+ +GED++ + F+ P D+V+ R+ K M L Y G +K Sbjct: 742 HLSGDAGLIQAYRDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSK 801 Query: 447 VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH---------------------LWM 485 + ++++ + + ++ + Sbjct: 802 QLEISVDEARTLMKEYFDRFGAVRDYLRGVVDQARIDGFTATIEGRRRYLPDLTSTDRQL 861 Query: 486 QDQYPEFAVKDKLIGTACELVKKAWRAKH 514 ++ A+ + G+A +++K+A H Sbjct: 862 RENAERIALNSPIQGSAADIIKRAMLGVH 890 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 56/159 (35%), Gaps = 10/159 (6%) Query: 504 ELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + V A R+K + + L LT E AR + + + V+ Sbjct: 773 DQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVV 832 Query: 563 PSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN 620 +R + + ++G YL TS + R ++ N +Q + DI+ M Sbjct: 833 DQARIDGFTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADIIKRAMLGVHAE 892 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652 ++L VHDE+V E +V L M Sbjct: 893 LKAQGLKSRMLLQVHDELVLEVAAGEREAVEKLVTEQMG 931 >gi|115252786|emb|CAK98222.1| probable dna polymeraseIprotein [Spiroplasma citri] Length = 869 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 83/536 (15%), Positives = 178/536 (33%), Gaps = 67/536 (12%) Query: 59 QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNF 118 Q+L D + +++ + + +I + +LA ++ + +N Sbjct: 357 QFLNDNKYQKLTYHAKSLIVALARD---NIFVQNIEYDMMLAGYVYNSNAKNSLDTYINL 413 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 E + + + KG P D + H + + R + Sbjct: 414 FEKKQILTD----EFFYGKGVKKQIPADVIKLGHFIGEKASYIHKLRPKIIELLKTNQQY 469 Query: 179 PL-SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L + E + + G ++D + I + ++L+ +I + I + Sbjct: 470 DLYHNIELPIAFALARMEINGVKVDQYELTTQTLRIEKIVQELNNEINDIAQKEI-NPNS 528 Query: 238 TYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSE 297 + LF + T + L + IL+ L + + Sbjct: 529 PKQISELLFQNFSLP-DRKKGSTAQETLEEIKNNHVIIPKILDYRKYQKLYSTYLKGMEK 587 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 + +DG++ + + TGR S QN+ +I D + Sbjct: 588 YIFADGKVHTIYK-QTLTNTGRLSSVEPNMQNI---------------------SIRDHI 625 Query: 358 GLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 + +++S L+ D + IE R+LA ++ + I AF N EDI+ T K F Sbjct: 626 QKEVRKI--FVVSSPDNILLSCDYSQIELRILAHMSKDQDLIAAFNNNEDIHTNTAMKIF 683 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 N D+++ R K + + Y G A + + + Q + F Sbjct: 684 NLSKDEITPNIRRSAKAVNFGIIYGISDFGLATDLNISVAKAKAIINNYYQQFPTIKAFI 743 Query: 474 D--------------------WEQAESHHLWMQDQY-PEFAVKDKLIGTACELVKKAWRA 512 D + + +MQ ++ A+ + G+A +++K A + Sbjct: 744 DKQVEFCKQNGYVTTIFNRKRYVSEINDRNYMQREFGKRIAMNMPIQGSAADIIKIALKN 803 Query: 513 KHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRL 568 Q L+L + I + +P++ + + ++ V I++ S +L Sbjct: 804 IDQEFLKL--------NLKAKIIAQIHDELIFEIPQVELIQVQKIVKILMEDSTKL 851 >gi|300741418|ref|ZP_07071439.1| DNA polymerase I [Rothia dentocariosa M567] gi|300380603|gb|EFJ77165.1| DNA polymerase I [Rothia dentocariosa M567] Length = 955 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 74/434 (17%), Positives = 148/434 (34%), Gaps = 76/434 (17%) Query: 161 EYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKL 220 R + + +L D E L + + G + L+ +L + + Sbjct: 517 HELARILHFEMQEQGQLKIYEDIELPLLYVLADMEQAGIAVSDALLNELNDTFSSRASMA 576 Query: 221 DEDIVKLTDGIIR----SSRQTYALRMYLFLITGIDLVDMSEG-------TLKSILSHSN 269 +E L G + + L+ LF G+ + ++ +L+ + Sbjct: 577 EEQAKVLIGGDVNGEPLNLASVKQLQTVLFERLGLPKTRKIKSGYSTDSESVADLLTKVS 636 Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 ++ A + LK + L +A +DGR+ T Q A+ TGR S Sbjct: 637 PESDGAQFLIALQAYRDNIKLKQTVEGLQKAAVTDGRVHTTFQ-QNAASTGRLSSTAPNL 695 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-------NGKKLVVAD 380 QN+P + +R I + + L+ AD Sbjct: 696 QNIPIRT------------------------DEGRRIRGAFIVAPKVLDGVEYEGLLTAD 731 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + IE R++ +A ++ I+A+A+GED++ ++ F ++V+ + RA K M L Sbjct: 732 YSQIEMRIMVHLAADEKLIQAYADGEDLHRYVGSEVFGVAPEEVTPQMRAKVKAMSYGLA 791 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH--------------- 481 Y G AK + G + + F ++H Sbjct: 792 YGLSRFGLAKQLNISSDEAGELRTNYFKRFGRVGRFLRGVVKQAHNDGYTETIYGRRRSL 851 Query: 482 ------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFA 529 + ++ A+ + GTA +++K A H+ + ++ + + Sbjct: 852 PDLDSPNRTRREAAERAALNAPIQGTAADIIKIAMINIHRRLQEEKLKTRMLLQVHDEII 911 Query: 530 CVVQEGGSISARRV 543 V G +A+R+ Sbjct: 912 LEVAVGEREAAQRI 925 Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 7/62 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKN 654 +Q + DI+ M N + ++L VHDEI+ E + + M++ Sbjct: 874 IQGTAADIIKIAMINIHRRLQEEKLKTRMLLQVHDEIILEVAVGEREAAQRILVEEMSEA 933 Query: 655 PS 656 Sbjct: 934 IE 935 >gi|121730764|ref|ZP_01682858.1| DNA polymerase I [Vibrio cholerae V52] gi|121627663|gb|EAX60328.1| DNA polymerase I [Vibrio cholerae V52] Length = 317 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 58/303 (19%), Positives = 109/303 (35%), Gaps = 63/303 (20%) Query: 270 ITQLAKDLILNRLASSGSAILKL-----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 + +LA D L ++ + KL + L + ++ GR+ + + TGR S Sbjct: 2 LQELALDYPLPKVLIEYRGLAKLKSTYTDKLPKMINPSTGRVHTSY-HQAVTATGRLSST 60 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P +R +A +G K++ D + Sbjct: 61 DPNLQNIP------------------------VRNEEGRRIRQAFVAPHGWKIMAVDYSQ 96 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQG 443 IE R++A ++G+ + AF +G+DI+ T A+ PID+VS EQR K + L Y Sbjct: 97 IELRIMAHLSGDQALLDAFRDGKDIHAATAAEIIGVPIDQVSSEQRRRAKAVNFGLIYGM 156 Query: 444 G----AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQA 478 AK + ++ + + + + Sbjct: 157 SAFGLAKQLGIPRGEAQEYMDKYFERYPGVMQYMEDTRSRAAQLGYVETIFGRRLHLPEI 216 Query: 479 ESHHLWMQDQYPEFAVKDKLIGTACELVKKAW-------RAKHQGVLQLWKDLTEGFACV 531 S + + A+ + GTA +++KKA + G ++L + + Sbjct: 217 TSRNAMRRKAAERAAINAPMQGTAADIIKKAMLLVDEWIEREGDGRVKLLMQVHDELVFE 276 Query: 532 VQE 534 V+E Sbjct: 277 VKE 279 >gi|284031021|ref|YP_003380952.1| DNA polymerase I [Kribbella flavida DSM 17836] gi|283810314|gb|ADB32153.1| DNA polymerase I [Kribbella flavida DSM 17836] Length = 901 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 73/410 (17%), Positives = 137/410 (33%), Gaps = 79/410 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E L + + G +D + KL+E A + ++ I + Sbjct: 497 LADVELPLIDVIAAMERDGIAVDRPYLEKLEERFATGVRDAATSAYEVIGKEI-NLGSPK 555 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L++ LF + ++ H + L RL + Sbjct: 556 QLQVVLFDELQMPKTKRTKTGYTTDADSLQALFEKTEHPFLAYLLAHRDATRLRQT---- 611 Query: 290 LKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + +S D R+ T A+ TGR S QN+P + Sbjct: 612 --VEGLLKTISPRDARIHTTFNQTIAA-TGRLSSTDPNLQNIPIRT-------------- 654 Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R + G + L+ AD + IE R++A ++ ++ I AF +GED Sbjct: 655 ----------EEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAFNSGED 704 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T A+ F+ +V++E RA K M L Y G ++ K + ++ Sbjct: 705 FHSVTAARVFSVQPGEVTQEMRAKIKAMNYGLAYGLSAYGLSQQLKIGVDEAKGLMDEYF 764 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + + E+ + ++ A+ + G+A Sbjct: 765 ERFGGVRDYLRSIVIEAGKSGYTETILGRRRYLPDLTSDNRQRREMAERMALNAPIQGSA 824 Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 +++K A K + +LQ+ +L A +E RR Sbjct: 825 ADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGEREALEELVRR 874 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 28/251 (11%) Query: 425 SKEQRAIGKVMELALGYQGGAKVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHL 483 ++E R I + + GY+ + + + + + ++ ED+ + + Sbjct: 654 TEEGRRIREAFVVGEGYESLMSADYSQIEMRIMAHVSEDEGLIDAFNSGEDFHSVTAARV 713 Query: 484 WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARR 542 + V + RAK + + L L+ + G A+ Sbjct: 714 FSVQPGE---------------VTQEMRAKIKAMNYGLAYGLSAYGLSQQLKIGVDEAKG 758 Query: 543 VANVPRLVMRRHKRDVH-IVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI 601 + + + + IV+ + + + G YL TS + R ++ N Sbjct: 759 LMDEYFERFGGVRDYLRSIVIEAGKSGYTETILGRRRYLPDLTSDNRQRREMAERMALNA 818 Query: 602 -VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MTK 653 +Q + D++ M + ++L VHDE+V E ++ L M Sbjct: 819 PIQGSAADVIKLAMLKVDASLRSSGLKSRMLLQVHDELVFEIAPGEREALEELVRRDMGS 878 Query: 654 NPSWAKGLPLK 664 A +PL Sbjct: 879 AVEMA--VPLD 887 >gi|297194997|ref|ZP_06912395.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] gi|197721920|gb|EDY65828.1| DNA polymerase I [Streptomyces pristinaespiralis ATCC 25486] Length = 909 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 83/539 (15%), Positives = 160/539 (29%), Gaps = 78/539 (14%) Query: 46 DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG 104 D T+ + D + V HN+ +F + + LA Sbjct: 380 DTTQLDESDERAFAAWISDPSRPKVMHNAKDALRVFPEHGW---EIAGVTMDTALAAYLV 436 Query: 105 LPSSLKNACLALNFSEHLTKMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 P A AL+ ++ A F ++A V Sbjct: 437 KPGRRSFALDALSIEYLHRELAPAAADGQLAFGTDEQAEADALMSQARAVLDLGEALGGK 496 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 +V A L D E LL + G D + +++ A ++ ++ Sbjct: 497 LEEVGAVELLH-------DVELPTSLLLARMERHGIAADRAHLEAMEQQFAGAVQQAVKE 549 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + L+ F + ++ + + L + Sbjct: 550 AHAAVGHEF-NLGSPKQLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIM 608 Query: 284 SSGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 +L L + +++DGR+ T A+ TGR S QN+P + Sbjct: 609 LRHREQARLRSTVEGLIKTIAADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRT----- 662 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWK 398 +R + G + L+ AD + IE RV+A ++ + Sbjct: 663 -------------------DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDLGL 703 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 I+AF +GED++ T ++ F+ V E R K M L Y G ++ + Sbjct: 704 IEAFTSGEDLHTTVASQVFSVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEPAE 763 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493 + + + + + E+ + ++ A Sbjct: 764 ARVLMDTYFERFGGVRDYLRRVVDEARATGYTATMLGRRRYLPDLNSDNRQRRESAERMA 823 Query: 494 VKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISARR 542 + + GTA ++VK A + +LQ+ ++ A +E R Sbjct: 824 LNAPIQGTAADIVKVAMLNVDRALTDAKLSSRLLLQVHDEIVLEVAPGEREQVETLVRH 882 >gi|32266816|ref|NP_860848.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] gi|32262868|gb|AAP77914.1| DNA polymerase I [Helicobacter hepaticus ATCC 51449] Length = 912 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 88/534 (16%), Positives = 172/534 (32%), Gaps = 98/534 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN F+ L TL ++ + + +L L ++ + + + K Sbjct: 408 IGHNLKFDLSLIFHTLELEHTGE-IYDSMIL-------GWLYDSIAPIGLDKQMLKWF-N 458 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPL-------- 180 +I+ + D A +Y D AT L+ RL + Sbjct: 459 HTMISFDSVVAKDENFSQVNIAAAT-------QYAAEDAIATFRLYHRLEEVFYKREWSS 511 Query: 181 -----SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSS 235 + E + + G ++D+ L+ L+E ++ +L I +L + Sbjct: 512 ILELANKLEYPFIKVLLAMECEGIKVDIPLLESLKEKASEHISQLSAQIFELCGETF-NL 570 Query: 236 RQTYALRMYLFLITGIDLVDMSEGTL---KSILSHSNITQLAKDLILNRLASSGSAILKL 292 L LF G+ +G L + L LIL+ + + Sbjct: 571 NSPQQLAHILFNRLGLKAGRSVKGGLSTDERTLLAIIDAHPVIALILDYREVNKLKSTYI 630 Query: 293 NTLSE--AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 L + + R+ + G + TGR S QN+P Sbjct: 631 EPLLRFGSANDKHRIYTSFLQSG-TATGRLSSKSPNLQNIP------------------- 670 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I+ G L+ D + IE R+LA + I++F +DI+ Sbjct: 671 -----VRREEGRKIRQAFISKEGHSLISIDYSQIELRLLAHFCKDSSLIESFKQDKDIHF 725 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNV 466 T A+ F +++ ++RAI K + L Y G A+ + ++ + Sbjct: 726 ETAARLFGV---ELAAQKRAIAKSINFGLIYGMGSKKLAQTLQISLKEAKNYIESYFALF 782 Query: 467 KSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 + F + ++ +M+ + + G+A +L+ Sbjct: 783 PTIKNFLNAQKEFLLENGYSQTLLGHRRYFDFKNATDFMKANFLREGINSIFQGSAADLI 842 Query: 507 KKAWRAKHQG--------VLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 K + H+ +LQ+ +L QE I A+ A + + Sbjct: 843 KLSMCEIHKRYGHSDFKMLLQVHDEL---IFEAPQEKAHIYAQEAAQIMNHIYE 893 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 5/59 (8%) Query: 598 TENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSETP-DTPYFSVGTLCSLM 651 +I Q + D++ M K + ++L VHDE++ E P + + +M Sbjct: 830 INSIFQGSAADLIKLSMCEIHKRYGHSDFKMLLQVHDELIFEAPQEKAHIYAQEAAQIM 888 >gi|256379536|ref|YP_003103196.1| DNA polymerase I [Actinosynnema mirum DSM 43827] gi|255923839|gb|ACU39350.1| DNA polymerase I [Actinosynnema mirum DSM 43827] Length = 888 Score = 206 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 72/416 (17%), Positives = 146/416 (35%), Gaps = 74/416 (17%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 I G +D + + L+ A K+ +D + I + L++ LF G+ Sbjct: 498 EIEGIGIAVDDEHLTGLEAHFAAGVKQAAQDAYAVIGKEI-NLGSPKQLQVVLFDELGMP 556 Query: 253 LVDM-------SEGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSD 302 L+S+ H + L + RL ++ ++ L +AV+ D Sbjct: 557 KTKKTKTGYTTDADALQSLFESTQHPFLQHLLAHRDVTRLKTT------VDGLLKAVADD 610 Query: 303 GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASD 362 GR+ T A+ TGR S QN+P + Sbjct: 611 GRIHTTFHQTIAA-TGRLSSTDPNLQNIPIRT------------------------DEGR 645 Query: 363 CVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPI 421 +R + G +L+ AD + IE R++A ++G++ I+AF +GED++ +KAF+ P Sbjct: 646 RIREGFVVGPGYAELMTADYSQIEMRIMAHLSGDEGLIEAFRSGEDLHTFVASKAFSVPT 705 Query: 422 DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 +V+ EQR K M L Y G A+ + A+ ++ + + Sbjct: 706 GEVTAEQRRRVKAMSYGLAYGLSEYGLAQQLRIPAAEAREQMEAYFSRFGGVRDYLQSIV 765 Query: 478 AESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAW------ 510 E+ + ++ A+ + G+A +++K A Sbjct: 766 EEARKKGYTETILGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVFQA 825 Query: 511 RAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 + ++ + + + +G + + + + + + R Sbjct: 826 LEASELTSRMLLQVHDELVLEIADGERAAVESLVREHMGNAFQLSVPLEVSVGVGR 881 >gi|259500513|ref|ZP_05743415.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] gi|259167897|gb|EEW52392.1| DNA-directed DNA polymerase I [Lactobacillus iners DSM 13335] Length = 890 Score = 206 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 72/518 (13%), Positives = 159/518 (30%), Gaps = 88/518 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107 + L + L D+ + + + ++ LGI + +LA G Sbjct: 369 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 425 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L N+ +GK + + T+ + + + Sbjct: 426 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 477 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 478 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 535 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283 + L + LF + ++ ++ + + + D++ R Sbjct: 536 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 594 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + +N L + + +DG++ + TGR S QN+P Sbjct: 595 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 640 Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + L D + +E RVLA ++ E ++AF Sbjct: 641 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 688 Query: 403 ANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 G DI+ T K F +D+V+ R K + + Y G AK Sbjct: 689 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 748 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + + + + + + ++ A+ Sbjct: 749 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 808 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A K + +LQ+ +L Sbjct: 809 PIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 846 >gi|329920128|ref|ZP_08276959.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] gi|328936582|gb|EGG33026.1| DNA-directed DNA polymerase [Lactobacillus iners SPIN 1401G] Length = 883 Score = 206 bits (525), Expect = 7e-51, Method: Composition-based stats. Identities = 70/531 (13%), Positives = 158/531 (29%), Gaps = 88/531 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSSLKNAC 113 L D+ + + + ++ +DI +LA G L N+ Sbjct: 368 LEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVLANSY 424 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +GK + + T+ + + + + Sbjct: 425 QEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP-------ELQQ 474 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 475 HEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF- 533 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF + ++ ++ + + + D++ R S + Sbjct: 534 NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQST 593 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 +N L + + +DG++ + TGR S QN+P Sbjct: 594 -YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------------ 633 Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L D + +E RVLA ++ E ++AF G DI Sbjct: 634 ------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDI 687 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T K F +D+V+ R K + + Y G AK + + Sbjct: 688 HAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYF 747 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + ++ A+ + G+A Sbjct: 748 EQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSA 807 Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 +++K A K + +LQ+ +L + ++ Sbjct: 808 ADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKI 858 >gi|302191203|ref|ZP_07267457.1| DNA polymerase I [Lactobacillus iners AB-1] Length = 883 Score = 206 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 72/518 (13%), Positives = 159/518 (30%), Gaps = 88/518 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107 + L + L D+ + + + ++ LGI + +LA G Sbjct: 362 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 418 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L N+ +GK + + T+ + + + Sbjct: 419 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 470 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 471 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 528 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283 + L + LF + ++ ++ + + + D++ R Sbjct: 529 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 587 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + +N L + + +DG++ + TGR S QN+P Sbjct: 588 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 633 Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + L D + +E RVLA ++ E ++AF Sbjct: 634 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 681 Query: 403 ANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 G DI+ T K F +D+V+ R K + + Y G AK Sbjct: 682 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 741 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + + + + + + ++ A+ Sbjct: 742 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 801 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A K + +LQ+ +L Sbjct: 802 PIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839 >gi|187250908|ref|YP_001875390.1| DNA polymerase I [Elusimicrobium minutum Pei191] gi|186971068|gb|ACC98053.1| DNA polymerase [Elusimicrobium minutum Pei191] Length = 862 Score = 206 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 62/360 (17%), Positives = 112/360 (31%), Gaps = 58/360 (16%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 ++ E L + + + G +D + + + E + DI K I + Sbjct: 461 NELELPLITVLLAMEEIGVLVDKAWLENFSKTLEGEIAAIQNDINKDAQREI-NVNSPKQ 519 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----L 295 L LF + V ++ + QL + + + KL + L Sbjct: 520 LGALLFDQLKLPSVKKTK--TGYSTDEEVLQQLVNLHPIVKKILEYRSNAKLKSTYVDNL 577 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + R+ L G + TGR S QN+P + Sbjct: 578 IMLADGNSRVHTYLDQTG-TVTGRLSSSSPNLQNIPIRT--------------------- 615 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R +A GK L+ D + I+ R+LA + + + AF G DI+ T A+ Sbjct: 616 ---PKGRMLRRAFVAEGGKTLLSVDYSQIDLRLLAHESQDSVLVNAFKEGGDIHTKTAAE 672 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNVKSTST 471 F + VS E R+ K + + Y G + + + K Sbjct: 673 VFGVMREMVSDEMRSSAKAINFGIIYGQGPMGLSQNLNISVREAKEYIDNYFAVYKGVRE 732 Query: 472 FEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACELVKKAW 510 + D A + M A+ + G + +++KKA Sbjct: 733 WIDKNIALARERGYVKTLLGHIRYLPEFKMGSGHMASFAQRAAINTIVQGGSADVIKKAM 792 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 10/129 (7%) Query: 538 ISARRVANVPRLVMRRHKR---DVHIVLPSSRRLVYSDVK-GDCSYLNTATSQLMRERTY 593 IS R +K + + +R Y G YL ++ Sbjct: 711 ISVREAKEYIDNYFAVYKGVREWIDKNIALARERGYVKTLLGHIRYLPEFKMGSGHMASF 770 Query: 594 GGKLTEN-IVQAISRDILCEGMKNA--TKNGYDI--VLTVHDEIVSETPDTPYF-SVGTL 647 + N IVQ S D++ + M + G ++ +L VHDE++ E P+ + Sbjct: 771 AQRAAINTIVQGGSADVIKKAMADIFNHYKGTEVKMLLQVHDELIFELPEKNLLKEAAVI 830 Query: 648 CSLMTKNPS 656 + M Sbjct: 831 KNKMEHTIE 839 >gi|312875574|ref|ZP_07735575.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] gi|311088828|gb|EFQ47271.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2053A-b] Length = 883 Score = 206 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 72/518 (13%), Positives = 159/518 (30%), Gaps = 88/518 (16%) Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPS 107 + L + L D+ + + + ++ LGI + +LA G Sbjct: 362 TPLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLG 418 Query: 108 SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDV 167 L N+ +GK + + T+ + + + Sbjct: 419 VLANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP----- 470 Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 + ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 471 --ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQL 528 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLA 283 + L + LF + ++ ++ + + + D++ R Sbjct: 529 AGEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQI 587 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQT 343 S + +N L + + +DG++ + TGR S QN+P Sbjct: 588 SKIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------ 633 Query: 344 IQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R + L D + +E RVLA ++ E ++AF Sbjct: 634 ------------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAF 681 Query: 403 ANGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 G DI+ T K F +D+V+ R K + + Y G AK Sbjct: 682 KEGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQN 741 Query: 458 DLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKD 496 + + + + + + ++ A+ Sbjct: 742 FINNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINS 801 Query: 497 KLIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A K + +LQ+ +L Sbjct: 802 PIQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839 >gi|315653652|ref|ZP_07906572.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] gi|315489014|gb|EFU78656.1| DNA-directed DNA polymerase I [Lactobacillus iners ATCC 55195] Length = 890 Score = 206 bits (525), Expect = 8e-51, Method: Composition-based stats. Identities = 70/531 (13%), Positives = 158/531 (29%), Gaps = 88/531 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSSLKNAC 113 L D+ + + + ++ +DI +LA G L N+ Sbjct: 375 LEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVLANSY 431 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +GK + + T+ + + + + Sbjct: 432 QEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP-------ELQQ 481 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 482 HEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF- 540 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF + ++ ++ + + + D++ R S + Sbjct: 541 NINSPKQLGVILFEKLKLAPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQST 600 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 +N L + + +DG++ + TGR S QN+P Sbjct: 601 -YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------------ 640 Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L D + +E RVLA ++ E ++AF G DI Sbjct: 641 ------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDI 694 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T K F +D+V+ R K + + Y G AK + + Sbjct: 695 HAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYF 754 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + ++ A+ + G+A Sbjct: 755 EQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSA 814 Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 +++K A K + +LQ+ +L + ++ Sbjct: 815 ADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKI 865 >gi|297571466|ref|YP_003697240.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] gi|296931813|gb|ADH92621.1| DNA polymerase I [Arcanobacterium haemolyticum DSM 20595] Length = 898 Score = 206 bits (525), Expect = 9e-51, Method: Composition-based stats. Identities = 84/560 (15%), Positives = 159/560 (28%), Gaps = 95/560 (16%) Query: 34 AYAWDDEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRW 93 Y + EP + + L D V + H+ + LG Sbjct: 354 GYVFGGEPA----LISEEDS-AAFSALLSDPNVGKIGHSMK---VQIHAWLGEGYTLAGI 405 Query: 94 ICTSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 + + + P + L + L +D + Sbjct: 406 VGDTEIDAYLLHPDQRTYDFTDLVQRYLAIDLGGGAQDTLGIGLDGEIVDDLAARAVATH 465 Query: 152 HVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQE 211 ++ + +A RE+ E + + + RG +D D + +L Sbjct: 466 DLRDAFARALETEEQSDALREM----------ELRVCDVLARMEQRGIAVDADQLARLHA 515 Query: 212 LIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT----------- 260 + + + L+ LF G+ ++ Sbjct: 516 DFDARVNQAATQAWEAIGDSSVNLSSPKQLQAVLFDQLGLPKTKKTKSGYTTNADALEQL 575 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAIL---KLNTLSEAVSSDGRLRGTLQFYGASRT 317 L I + LA L L + AI + L ++ D R+R T Q A+ T Sbjct: 576 LVKISMREDDQALAGQNFLTGLLAHRDAIKLRQSVEGLQRSLGDDQRIRTTYQQTVAA-T 634 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KL 376 GR S QN+ +R + +G L Sbjct: 635 GRLSSTDPNLQNI------------------------HARTEEGQKIREVFVPGDGYDYL 670 Query: 377 VVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVME 436 + AD + IE R++A ++G+ I AF G D++ ++ F +V+ QR+ K M Sbjct: 671 MTADYSQIEMRLMAHLSGDAELIVAFNAGADLHNYVASRVFGVAESEVTPAQRSKIKAMS 730 Query: 437 LALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKSTSTFEDWEQAESH----------- 481 L Y A + + + D A++ Sbjct: 731 YGLVYGLSAFGLSAQLKIPVPEAQNLMDGYFSRFGRVKEYLDGLVAQARKDGFTQTLLGR 790 Query: 482 ----------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----------KHQGVLQLW 521 + +++ A+ + G+A +++K A + +LQ+ Sbjct: 791 RRYLPELSSTNRQVRESAERMALNAPIQGSAADIIKIAMLNVERELAAAQLSSRVLLQVH 850 Query: 522 KDLTEGFACVVQEGGSISAR 541 +L A E R Sbjct: 851 DELVLEVAASEAEQVEAIVR 870 >gi|328881679|emb|CCA54918.1| DNA polymerase I [Streptomyces venezuelae ATCC 10712] Length = 916 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 77/490 (15%), Positives = 149/490 (30%), Gaps = 66/490 (13%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSE 120 + D V HN+ +F + + LA P A AL+ Sbjct: 402 IADPDRPKVLHNAKGAMRVFPEHGW---SIAGVTMDTALAAYLVKPGRRSFALDALSVEY 458 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA-TRELFKRLIP 179 ++ A + G+ D+ + L + ++ E REL Sbjct: 459 LHRELAPAAAADGQLAFGADDTAEAEALMTQARAVLDLGDAFAEKLDEVGAREL------ 512 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E L + G D D + +++ A ++ ++ + Sbjct: 513 LHQVELPTSALLARLERHGIAADRDHLEAMEQQFAGAVQQAVKEAHASVGHEF-NLGSPK 571 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L+ F + ++ + + L + +L L Sbjct: 572 QLQEVFFGELNLPKTKKTKTGYTTDADALAWLAAQTEHELPVIMLRHREQARLRSTVEGL 631 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + + +DGR+ T A+ TGR S QN+P + Sbjct: 632 IKTIGADGRIHTTFSQTVAA-TGRLSSTDPNLQNVPVRT--------------------- 669 Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + L+ AD + IE RV+A ++ + I+AF +GED++ T + Sbjct: 670 ---DEGRAIRHGFVVGEGFEALMTADYSQIELRVMAHLSEDAGLIEAFTSGEDLHTTVAS 726 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F V E R K M L Y G ++ + + + Sbjct: 727 QVFGVERSAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLNIDPGEARGLMDTYFERFGGVR 786 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + E+ + ++ A+ + GTA ++VK A Sbjct: 787 DYLRRVVDEARATGYTETMLGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVA 846 Query: 510 WRAKHQGVLQ 519 + + + Sbjct: 847 MLNVDRALTE 856 >gi|312872962|ref|ZP_07733022.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] gi|311091484|gb|EFQ49868.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 2062A-h1] Length = 883 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 70/512 (13%), Positives = 155/512 (30%), Gaps = 88/512 (17%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSSLKNAC 113 L D+ + + + ++ +DI +LA G L N+ Sbjct: 368 LEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNAGDLGVLANSY 424 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 +GK + + T+ + + + + Sbjct: 425 QEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP-------ELQQ 474 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 475 HEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAGEKF- 533 Query: 234 SSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASSGSAI 289 + L + LF + ++ ++ + + + D++ R S + Sbjct: 534 NINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISKIQST 593 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 +N L + + +DG++ + TGR S QN+P Sbjct: 594 -YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------------ 633 Query: 350 GETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + L D + +E RVLA ++ E ++AF G DI Sbjct: 634 ------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKEGYDI 687 Query: 409 YVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + T K F +D+V+ R K + + Y G AK + + Sbjct: 688 HAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFINNYF 747 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + ++ A+ + G+A Sbjct: 748 EQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPIQGSA 807 Query: 503 CELVKKAWRA----------KHQGVLQLWKDL 524 +++K A K + +LQ+ +L Sbjct: 808 ADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839 >gi|300767153|ref|ZP_07077065.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494972|gb|EFK30128.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 887 Score = 206 bits (524), Expect = 9e-51, Method: Composition-based stats. Identities = 52/364 (14%), Positives = 115/364 (31%), Gaps = 61/364 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E+ + + + G +D + + + ++++ I + + L Sbjct: 486 DIEKPMANVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQL 544 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295 LF + ++ ++ + + +LA + ++ R S + + L Sbjct: 545 GHILFEEMKLPVIKKTK--TGYSTAVDVLEKLAPEAPIVANILQYRQISKIQSTYVIGLL 602 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 S+D ++ ++TGR S QN+P Sbjct: 603 DAIHSADQKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------------ 637 Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + S G ++ +D + IE RVLA I ++ AF G+DI+ T Sbjct: 638 VRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 697 Query: 415 KAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + F+ ++V+ R K + + Y G ++ + + + Sbjct: 698 RIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDAYFKEYPGV 757 Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + D S + A+ + G+A +++K Sbjct: 758 KKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKI 817 Query: 509 AWRA 512 A Sbjct: 818 AMIK 821 >gi|51598799|ref|YP_072987.1| DNA polymerase I [Borrelia garinii PBi] gi|51573370|gb|AAU07395.1| DNA polymerase I [Borrelia garinii PBi] Length = 909 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 94/562 (16%), Positives = 183/562 (32%), Gaps = 110/562 (19%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLL--- 58 + + ID ET S + L + + E +P + Sbjct: 341 NYISIDTETSS------------LDTYTAKLIGISISFKE------FEGYYIPIETKGKI 382 Query: 59 -----------QYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS 107 L + N F+ + K IP + T + A S Sbjct: 383 YIEKHYIIQKFNNLFKSNPKIIGQNYKFDYKILKNNGFSPIPP--YFDTMIAAYLIDTNS 440 Query: 108 SLKNACLALNFSEHL-TKMEEGKALIARFCKGSIDSPP-YDCTRANHV-QAWQLFGEYCK 164 + LA + H K E+ F S++ Y C A+ + + +F E K Sbjct: 441 KVSLDFLAEKYLMHKNIKYEDVIQKNDNFANISLEMATSYSCEDADITFRLFNIFTEKLK 500 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 D EL++ + + E + + + G +D + + + + + +E + ++ +I Sbjct: 501 ED-----ELYEL---MHEIEMPFNNVIIEMEENGIYLDKEYLKEYGKELGKELELIENEI 552 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSI-------LSHSNITQLAKDL 277 +K + GI + + LF + L + + I H +I L K Sbjct: 553 IK-SIGIDFNLNSPKQMHEILFEKLNLKLPEKMKKDSTDIKVLESLREQHESIGNLIKHR 611 Query: 278 ILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 + +L S+ + + L E ++ RL + + TGR + QN+P Sbjct: 612 RIAKLKSTYT-----DNLIELINYKTNRLHTSF-IQTRTATGRITSINPNLQNIP----- 660 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 +R NG + AD + IE +LA ++ ++ Sbjct: 661 -------------------IKDEKGRKIRKAFKPENGNIFISADYSQIELAILAHLSQDE 701 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQGG----AKVFKTM 451 IKAF N +DI++ T +K F +K++ R I K + + Y+ AK Sbjct: 702 TLIKAFENNKDIHIETASKLFKIEEKEKITPNLRRIAKSINFGIIYRMSDFRLAKELGIT 761 Query: 452 ASHCGLDLQQFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYP 490 + + + F ++ S++ + Sbjct: 762 KEEAKGFINSYFDSYPKIKEFIINQINFVKNTGYSETILKRRRYIKEINSNNYLERSAAE 821 Query: 491 EFAVKDKLIGTACELVKKAWRA 512 A+ + G+A + +K A Sbjct: 822 RIAINSTIQGSAADYMKIAMIK 843 Score = 49.0 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 + +Q + D + M K I+L VHDE++ E+P V + +M Sbjct: 825 INSTIQGSAADYMKIAMIKVFNEFKNKKMESKILLQVHDEMLIESPIKEENEVKKILKIM 884 Query: 652 TKNPSWAKGLPLKA 665 + ++ LPL+A Sbjct: 885 MET-AYTLNLPLRA 897 >gi|308180373|ref|YP_003924501.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045864|gb|ADN98407.1| DNA-directed DNA polymerase I [Lactobacillus plantarum subsp. plantarum ST-III] Length = 882 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 52/364 (14%), Positives = 116/364 (31%), Gaps = 61/364 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E+ + + + G +D + + + ++++ I + + L Sbjct: 481 DIEKPMANVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQL 539 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295 LF + ++ ++ + + + +LA + ++ R S + + L Sbjct: 540 GHILFEEMKLPVIKKTKTGYSTAVD--VLEKLAPEAPIVANILQYRQISKIQSTYVIGLL 597 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 S+D ++ ++TGR S QN+P Sbjct: 598 DAIHSADQKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------------ 632 Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + S G ++ +D + IE RVLA I ++ AF G+DI+ T Sbjct: 633 VRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 692 Query: 415 KAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + F+ ++V+ R K + + Y G ++ + + + Sbjct: 693 RIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDAYFKEYPGV 752 Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + D S + A+ + G+A +++K Sbjct: 753 KKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKI 812 Query: 509 AWRA 512 A Sbjct: 813 AMIK 816 >gi|325912689|ref|ZP_08175072.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] gi|325478110|gb|EGC81239.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 60-B] Length = 883 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 72/517 (13%), Positives = 158/517 (30%), Gaps = 88/517 (17%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-------GLPSS 108 L + L D+ + + + ++ LGI + +LA G Sbjct: 363 PLKKILEDKNIAKQVFDLKRNYVGLQR-LGITLF--NVTDDIMLASYIADSENNAGDLGV 419 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L N+ +GK + + T+ + + + Sbjct: 420 LANSYQEFYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP------ 470 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 471 -ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA 529 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ + + + D++ R S Sbjct: 530 GEKF-NINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQIS 588 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + +N L + + +DG++ + TGR S QN+P Sbjct: 589 KIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------- 633 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + L D + +E RVLA ++ E ++AF Sbjct: 634 -----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682 Query: 404 NGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 G DI+ T K F +D+V+ R K + + Y G AK Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 + + + + + + ++ A+ Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDL 524 + G+A +++K A K + +LQ+ +L Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839 >gi|28378222|ref|NP_785114.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254556429|ref|YP_003062846.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] gi|28271057|emb|CAD63962.1| DNA-directed DNA polymerase I [Lactobacillus plantarum WCFS1] gi|254045356|gb|ACT62149.1| DNA-directed DNA polymerase I [Lactobacillus plantarum JDM1] Length = 882 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 52/364 (14%), Positives = 116/364 (31%), Gaps = 61/364 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E+ + + + G +D + + + ++++ I + + L Sbjct: 481 DIEKPMANVLAQMEIAGITVDSSRLKAMGSQFTERLSEIEQTIYQEAGEEF-NINSPKQL 539 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LILNRLASSGSAILKLNTL 295 LF + ++ ++ + + + +LA + ++ R S + + L Sbjct: 540 GHILFEEMKLPVIKKTKTGYSTAVD--VLEKLAPEAPIVANILQYRQISKIQSTYVVGLL 597 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 S+D ++ ++TGR S QN+P Sbjct: 598 DAIHSADQKVHTRY-LQTLTQTGRLSSVDPNLQNIP------------------------ 632 Query: 356 PLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + S G ++ +D + IE RVLA I ++ AF G+DI+ T Sbjct: 633 VRLEEGRKIRQAFVPSHEGWQIFSSDYSQIELRVLAHITDDENMQAAFKAGDDIHAATAM 692 Query: 415 KAFNT-PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 + F+ ++V+ R K + + Y G ++ + + + Sbjct: 693 RIFHLNSAEEVTPNIRRQAKAVNFGIVYGISDYGLSQNIGITRKQARSFIDAYFKEYPGV 752 Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 + D S + A+ + G+A +++K Sbjct: 753 KKYMDEIVQTAKKQGYVETISHRRRYLPDINSKSFNQRSFAERTAMNTPIQGSAADIIKI 812 Query: 509 AWRA 512 A Sbjct: 813 AMIK 816 >gi|289705501|ref|ZP_06501893.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] gi|289557730|gb|EFD51029.1| DNA-directed DNA polymerase [Micrococcus luteus SK58] Length = 937 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 75/409 (18%), Positives = 141/409 (34%), Gaps = 72/409 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSS 235 L + E L L + G +D+D + L+E E + T G+ + Sbjct: 526 LQELEIPLSRLLARMELTGIAVDVDALTGLREDFTAAADAAKESAWASVAEETGGMQVNL 585 Query: 236 RQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAIL---K 291 L+ LF + ++ G + S ++ + + L L + A Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTQHPFLENLMAHRDATKLRQT 645 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E V+ DGR+ T A+ TGR S QN+P + + Sbjct: 646 VEGLLETVAPDGRIHTTYS-QTAAATGRLSSLHPNLQNIPVRTEA--------------- 689 Query: 352 TIADPLGLASDCVRSCIIA----SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A L+ AD + IE R++A ++ ++ I+AF GED Sbjct: 690 ---------GRRIRGVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGED 740 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 ++ ++ F D+V+ EQRA K M L Y G +K K ++ + Sbjct: 741 LHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF 800 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + A++ + ++D A+ + G+A Sbjct: 801 DRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSA 860 Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K+A + +LQ+ +L E + + Sbjct: 861 ADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLK 909 Score = 44.0 bits (102), Expect = 0.097, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 AR + + + V+ +R+ Y+ ++G YL +S + R + Sbjct: 791 EARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERA 850 Query: 598 TENI-VQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETPDTP-YFSVGTLCS 649 N +Q + DI+ M + ++G ++L VHDE++ E P S L Sbjct: 851 ALNAPIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQSTALLKE 910 Query: 650 LMTKN 654 M + Sbjct: 911 RMGRA 915 >gi|241889843|ref|ZP_04777141.1| DNA polymerase I [Gemella haemolysans ATCC 10379] gi|241863465|gb|EER67849.1| DNA polymerase I [Gemella haemolysans ATCC 10379] Length = 879 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 120/362 (33%), Gaps = 59/362 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E + + + G + + ++ + K L+ I L + L Sbjct: 480 DIEIKVAKVLANMEYEGIHVSKKALEEMSAEFDERIKTLEASIYTLAGSEFNIA-SPKQL 538 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296 + LF G+ + ++ + + + QL + L I KLN+ L Sbjct: 539 GVVLFEDLGLPPIKKTKTGYSTAVE--VLEQLQHSHEIIPLIMEYRTITKLNSTYAKGLV 596 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + ++ +G++ + A +TGR S QN+P + Sbjct: 597 KDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIPTR----------------------- 632 Query: 357 LGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + AS+ + ++ D + IE RVLA IA + I AF + DI+ T + Sbjct: 633 -IEEGKKIRKAFVPASDDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASD 691 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 +D+V+ R K + + Y G + + ++ + K Sbjct: 692 VNGVSLDEVTSSMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFKGVDK 751 Query: 472 FE---------------------DWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAW 510 + + + + + A+ + GTA +++K A Sbjct: 752 YMTDIVDFAREHGYVETLFNRRRALPDINAKNKIVANLNARIAMNSPIQGTAADIIKIAM 811 Query: 511 RA 512 Sbjct: 812 VN 813 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 +Q + DI+ M N T ++L VHDE++ + + +M + Sbjct: 799 IQGTAADIIKIAMVNVFEYLEKTNVDAKLLLQVHDELIFDVNKDIEEEFTKEMIKIMEEA 858 >gi|307580241|gb|ADN64210.1| truncated phage-related DNA polymerase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 205 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 73/206 (35%), Positives = 103/206 (50%), Gaps = 12/206 (5%) Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535 E E+ + P F + D+ AC++ K+AWR H + W+ L + Sbjct: 5 EAVEALQWTKANHRPTFGLSDR-AWLACDVFKRAWRNAHPAIAAFWQALQCAVTDAIGHP 63 Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVK----GDCSYLNT--ATSQLMR 589 + + ++ + + + LPS R L Y+ + G SY+ T T + R Sbjct: 64 ETAHT-----CCGITVQYSRAWLRLRLPSGRVLYYAAPRVDEHGALSYMGTHPVTRKWTR 118 Query: 590 ERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 TYGGKL ENI QA+SRD+L M GY IVLTVHDEI++E D F+ L + Sbjct: 119 ITTYGGKLVENITQAVSRDVLAACMPAIETAGYAIVLTVHDEIITEADDNAAFNAAHLAA 178 Query: 650 LMTKNPSWAKGLPLKAEGYEAKRYRK 675 LM P WA+GLPL AEG++ RYRK Sbjct: 179 LMATPPPWAQGLPLAAEGFQTHRYRK 204 >gi|330469201|ref|YP_004406944.1| DNA polymerase i [Verrucosispora maris AB-18-032] gi|328812172|gb|AEB46344.1| DNA polymerase i [Verrucosispora maris AB-18-032] Length = 899 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 70/437 (16%), Positives = 139/437 (31%), Gaps = 62/437 (14%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 D E +R+ + ++ E L + + G D D + +L+ A E K + Sbjct: 482 DAELSRDGEQSARLMAGVELPLMRVLAGMERVGIAADTDYLSELEAHFAAEVKAAAQAAY 541 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNI-TQLAKDLILNR 281 + + L+ LF + + T L T+ L R Sbjct: 542 AVIGREF-NLGSPKQLQEILFGELNLPKTKKIKTGYTTDADALQWLYAQTEHPLLHHLLR 600 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 ++ L ++VS DGR+ T A+ TGR S QN+P + Sbjct: 601 HRDVARLKSTVDGLLKSVSDDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPIRT------- 652 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIK 400 +R + G + L+ AD + IE R++A ++G++ I+ Sbjct: 653 -----------------EEGRRIRRAFVVGEGYECLLTADYSQIEMRIMAHLSGDEALIE 695 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF +G D + T + F + +V+ +QR K M L Y G ++ A Sbjct: 696 AFNSGHDFHAATASSVFEVAVAEVTPDQRRKIKAMNYGLAYGLSAFGLSQQLGITAEEAR 755 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 ++ + + A + + ++ A+ Sbjct: 756 GLMEVYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAERMALN 815 Query: 496 DKLIGTACELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVANVPRL 549 + G+A +++K A ++ + + V G + + Sbjct: 816 APIQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELVFEVAPGERATLEELVRREMG 875 Query: 550 VMRRHKRDVHIVLPSSR 566 + + + R Sbjct: 876 GAYPLSVPLEVSVGEGR 892 Score = 43.6 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 9/125 (7%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595 + AR + V + + V+ +R+ Y+ + G YL S + R Sbjct: 751 AEEARGLMEVYFAGFGGVRDYLQEVVARARQDGYTSTILGRRRYLPDLVSDNRQRREMAE 810 Query: 596 KLTENI-VQAISRDILCEGMKNAT----KNGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 ++ N +Q + DI+ M + G ++L VHDE+V E ++ L Sbjct: 811 RMALNAPIQGSAADIIKVAMLHVDTALRDAGLRSRMLLQVHDELVFEVAPGERATLEELV 870 Query: 649 SL-MT 652 M Sbjct: 871 RREMG 875 >gi|296140146|ref|YP_003647389.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] gi|296028280|gb|ADG79050.1| DNA polymerase I [Tsukamurella paurometabola DSM 20162] Length = 917 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 89/485 (18%), Positives = 152/485 (31%), Gaps = 131/485 (27%) Query: 189 LLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLI 248 + + G +D D + L + + + + I + L++ LF Sbjct: 523 RVLGVMEATGIAVDTDHLESLHSDFSDRIRAAEAAAFEEIGEQI-NLGSPKQLQVILFEK 581 Query: 249 TGIDLVDM-------SEGTLKSILS---HSNITQLAKDLILNRLASSGSAILKLNTLSEA 298 G+ L+++ H + L + RL + + L +A Sbjct: 582 LGLPKTKKTKTGYTTDAAALEALYEKEPHPFLQYLLEHRDATRLKVT------VEGLLKA 635 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 V+SDGR+ T A+ TGR S QN+P + + Sbjct: 636 VASDGRIHSTFNQTVAA-TGRLSSTDPNLQNIPVRTEA---------------------- 672 Query: 359 LASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAF 417 +R +A G L+ AD + IE R++A ++ ++ I+AF GED++ AKAF Sbjct: 673 --GRQIRHAFVAGEGYETLMTADYSQIEMRIMAHLSSDEGLIEAFNTGEDLHNFVGAKAF 730 Query: 418 NTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQ 477 PID+V+ + R K M L Y A +A+ + + Sbjct: 731 GVPIDEVTPDMRRRVKAMSYGLAYGLSA---FGLAAQLKISRDEAKDQ------------ 775 Query: 478 AESHHLWMQDQYPEFA-VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG 536 M+ + F V+D L E + + G + DLT Sbjct: 776 -------MEAYFARFGGVRDYLQDVVTEATRNEYTETIFGRRRYLPDLTST--------- 819 Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGK 596 + S+ R+ + Sbjct: 820 ---------------------NRMRRESAERMALNAP----------------------- 835 Query: 597 LTENIVQAISRDILCEGMKNATK----NGY--DIVLTVHDEIVSETPDTPYFSVGTLC-S 649 +Q + DI+ M N K G ++L VHDE+V E + L Sbjct: 836 -----IQGSAADIIKVAMINLDKQIRAAGLTSRMLLQVHDELVLEVAAGERDELEKLVRD 890 Query: 650 LMTKN 654 M Sbjct: 891 TMGTA 895 >gi|290992757|ref|XP_002679000.1| DNA polymerase I [Naegleria gruberi] gi|284092615|gb|EFC46256.1| DNA polymerase I [Naegleria gruberi] Length = 1085 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 85/586 (14%), Positives = 183/586 (31%), Gaps = 123/586 (20%) Query: 27 QAVITLCAYAWDDEPVKLWD---RTEQSAMPSDLL-QYLRDETVMCVAHNSLFERILFKK 82 QA + V+ D ++S + S + + + + ++ + HN + + Sbjct: 486 QAYYLPF---FKGGKVEFLDSVNILKESPILSKVRTEIMENPNILKIGHNIKYHIKMLAN 542 Query: 83 TLGIDIPSKRWICTSVLARTNGLPSSLKN----ACLALNFSEHLTKMEE----GKALIAR 134 G+ + + I G + L L+ EH+ +E GK + Sbjct: 543 Y-GVTVKNFDDIMVMSYVLNCGKHGHEMDEIVENVLLLDPKEHIIPEKEVLGIGKKKVTL 601 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 + + C H + + K ++ + +L + E+ L I Sbjct: 602 MEADIVSVVHFAC---QHADLTKQAYDVLKSALDKSPKLTQF---YEGIEKPLVETLAGI 655 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGII---------------------- 232 +G +D ++K++ ++ K + I + Sbjct: 656 EMKGVFMDEPALVKMENEYREKIKAIGNKIREDAGYPTIDEDIEIPTSEEEIESMIIEMD 715 Query: 233 ---------RSSRQTYALRMYLFLITGIDLVDMSEGTLKS-ILSHSNITQLAKD------ 276 + L +F GI + + IL+ + +LA + Sbjct: 716 EMKQEASEEFNINSNRQLGQVIFEKLGIGTKLRKKTKVGDYILNAEVLQKLAAEGHSIAK 775 Query: 277 LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 IL A + ++ L + ++ R+ T Q + TGR S + QN+P + Sbjct: 776 HILEYRALTKLYSTYISGLRQHINPYTKRIHTTFQN-ALTVTGRLSSVMPNIQNIPVRT- 833 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAG 394 +R C I S+ ++ D + +E R+LA IA Sbjct: 834 -----------------------AEGKQIRRCFISPSDDYVIMKVDYSQVELRILAHIAN 870 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKT 450 AF +D++ T ++ FN P+D+V K R K + + Y +K Sbjct: 871 IPVLKNAFKENKDVHAITASQVFNVPLDQVDKSTRNKAKAINFGIIYGMSEFGLSKRIGV 930 Query: 451 MASHCGLDLQQFSQNVKSTSTFEDWEQ-----------AESHHLWMQDQY---------- 489 ++Q+ + + + W+ Sbjct: 931 DTQAAKSFIEQYFKQYPGIKNYMTKTIEFCRKHGYVNTLFNRRCWIPGIEDQGFGGKSSF 990 Query: 490 -PEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDL 524 ++ + GT+ ++ K A + H+ ++Q+ ++ Sbjct: 991 GERTSINTPIQGTSADITKIAMNSLHKAFQEKGLRTRMIIQVHDEI 1036 Score = 46.3 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 8/79 (10%) Query: 581 NTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYDIVL--TVHDEIV 633 + ++G + + N +Q S DI M + K G + VHDEIV Sbjct: 978 GIEDQGFGGKSSFGERTSINTPIQGTSADITKIAMNSLHKAFQEKGLRTRMIIQVHDEIV 1037 Query: 634 SETPDTPYFSVGT-LCSLM 651 E P +V + LM Sbjct: 1038 FEVPKDEVETVEPIIKELM 1056 >gi|329769116|ref|ZP_08260537.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] gi|328839462|gb|EGF89039.1| hypothetical protein HMPREF0433_00301 [Gemella sanguinis M325] Length = 879 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 66/381 (17%), Positives = 133/381 (34%), Gaps = 65/381 (17%) Query: 168 EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKL 227 E +L+K + E + + + G + + ++ + K L+ I L Sbjct: 472 ENMLDLYKNI------EIKVARVLANMEFEGIHVSKKALDEMSHEFDERIKVLEGSIYTL 525 Query: 228 TDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + L + LF G+ +V ++ + + + QL + L Sbjct: 526 AGSEFNIA-SPKQLGVVLFEDLGLPVVKKTKTGYSTAVE--VLEQLQYKHDIIPLIMEYR 582 Query: 288 AILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + KLN+ L + ++ +G++ + ++TGR S QN+P + Sbjct: 583 TLTKLNSTYAKGLVKDITREGKIHTRYE-QTLTQTGRLSSVNPNLQNIPTR--------- 632 Query: 343 TIQALNRGETIADPLGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +R I ASN + ++ D + IE RVLA IA + I A Sbjct: 633 ---------------IEEGKKIRKAFIPASNDRVILSIDYSQIELRVLAHIAQDKGMIDA 677 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F + DI+ T + P+D+V+ R K + + Y G + Sbjct: 678 FKHDVDIHTKTASDVNGVPLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKE 737 Query: 458 DLQQFSQNVKST-STFEDWEQAESHHLWMQDQY--------------------PEFAVKD 496 ++++ + K D + H +++ Y A+ Sbjct: 738 FIEKYLETFKGVDKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNKIIANLNARIAMNT 797 Query: 497 KLIGTACELVKKAWRAKHQGV 517 + GTA +++K A + + + Sbjct: 798 PIQGTAADIIKIAMISAYNYI 818 Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 39/131 (29%), Gaps = 9/131 (6%) Query: 531 VVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRE 590 + ++ + + V + V + + +N + Sbjct: 730 ITRKRAKEFIEKYLETFKGVDKYMTDIVKFAKEHGYVETLYNRRRSLPEINAKNKIIANL 789 Query: 591 RTYGGKLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS- 643 +Q + DI+ M +A +K ++L VHDE++ + Sbjct: 790 --NARIAMNTPIQGTAADIIKIAMISAYNYIEESKVDAKLLLQVHDELIFDVSKDILEEF 847 Query: 644 VGTLCSLMTKN 654 + ++M + Sbjct: 848 TDKMVAIMEEA 858 >gi|257466192|ref|ZP_05630503.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 882 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 80/410 (19%), Positives = 151/410 (36%), Gaps = 66/410 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +EL L + E L + ++ +G +ID K + ++ L+++I K Sbjct: 473 EKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAG 529 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAKDLILNRLAS 284 + L LFL + ++ T +L + + Q+A +L+ R Sbjct: 530 EEF-NINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYR-KL 587 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + ++ + + V D R+ G + TGR S QN+P Sbjct: 588 AKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGRLSSSDPNLQNIP------------- 633 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA +G KL+ D + +E RVLA ++ ++ +KA+ Sbjct: 634 -----------VKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQE 682 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +D++ T K F ++VS+EQR + K++ ++ Y G AK + Sbjct: 683 KQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYI 742 Query: 460 QQFSQNVKSTSTF--EDWEQAESH-------------------HLWMQDQYPEFAVKDKL 498 +++ + F E E AE H + +++Q AV + Sbjct: 743 KRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVV 802 Query: 499 IGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISARRV 543 GTA E++KK + +L L + + +QE + Sbjct: 803 QGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIFEIQEERVEEYVKT 852 >gi|315917350|ref|ZP_07913590.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] gi|313691225|gb|EFS28060.1| DNA polymerase I [Fusobacterium gonidiaformans ATCC 25563] Length = 884 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 80/410 (19%), Positives = 151/410 (36%), Gaps = 66/410 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +EL L + E L + ++ +G +ID K + ++ L+++I K Sbjct: 475 EKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAG 531 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAKDLILNRLAS 284 + L LFL + ++ T +L + + Q+A +L+ R Sbjct: 532 EEF-NINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYR-KL 589 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + ++ + + V D R+ G + TGR S QN+P Sbjct: 590 AKLKNTYVDPIPKMVKFDDRIHTCYHQIG-TVTGRLSSSDPNLQNIP------------- 635 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA +G KL+ D + +E RVLA ++ ++ +KA+ Sbjct: 636 -----------VKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQE 684 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +D++ T K F ++VS+EQR + K++ ++ Y G AK + Sbjct: 685 KQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYI 744 Query: 460 QQFSQNVKSTSTF--EDWEQAESH-------------------HLWMQDQYPEFAVKDKL 498 +++ + F E E AE H + +++Q AV + Sbjct: 745 KRYFAQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVV 804 Query: 499 IGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISARRV 543 GTA E++KK + +L L + + +QE + Sbjct: 805 QGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIFEIQEERVEEYVKT 854 >gi|311742282|ref|ZP_07716091.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] gi|311313910|gb|EFQ83818.1| DNA-directed DNA polymerase I [Aeromicrobium marinum DSM 15272] Length = 891 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 84/504 (16%), Positives = 146/504 (28%), Gaps = 129/504 (25%) Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 A E + L+D E L + T+ G +D D + L + ++ + Sbjct: 477 AELEASDSMSLLADLELPLVDVLMTMESTGIAVDTDHLDTLHAEFTERMLGAAQEAYAVI 536 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLI 278 + + L++ LF G+ ++ + H + L Sbjct: 537 GREV-NLGSPKQLQVVLFDELGMPRTKRTKTGYTTDADALQGLFAKTQHPFLEHLLAHRD 595 Query: 279 LNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 + RL + + L + V+ DGR+ T A+ TGR S QN+P + S Sbjct: 596 VTRLRQT------VEGLQKTVAPDGRIHTTYAQTIAA-TGRLSSADPNLQNIPIRTES-- 646 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDW 397 +R G + L+ AD + IE R++A ++ + Sbjct: 647 ----------------------GRRIREAFCVGPGFETLLTADYSQIEMRIMAHLSEDAG 684 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGL 457 I+AF GED + AK F+ + RA K M L Y + + G+ Sbjct: 685 LIEAFRTGEDFHTVMAAKVFDRDPGDIDGGLRARIKAMNYGLAYGLSS---YGLGQQLGI 741 Query: 458 DLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 +D+ Q V+D L G E + + A G Sbjct: 742 SPGDAQ------VLMDDYFQTFG------------GVRDYLHGVVDEARQTGFTATILGR 783 Query: 518 LQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDC 577 + D+ R + Sbjct: 784 RRYLP----------------------------------DLQSDNRQRREMA-------- 801 Query: 578 SYLNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN------GYDIVLTVHDE 631 R +Q + D++ M + G ++L VHDE Sbjct: 802 ----------ERMALNAP------IQGSAADLIKVAMLGVDRALADAGLGSRMLLQVHDE 845 Query: 632 IVSETPDTPYFSVGTLC-SLMTKN 654 +V E ++ L M Sbjct: 846 LVLEVAPGERDALEALVREQMAAA 869 >gi|312871738|ref|ZP_07731826.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] gi|311092680|gb|EFQ51036.1| DNA-directed DNA polymerase [Lactobacillus iners LEAF 3008A-a] Length = 883 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 72/516 (13%), Positives = 153/516 (29%), Gaps = 86/516 (16%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-------SS 108 L + L D+ + + + ++ +DI +LA Sbjct: 363 PLKKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNARDIGV 419 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L N+ +GK + + T+ + + + Sbjct: 420 LANSYQESYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP------ 470 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +++ + E + ++ + G ++ ++K++ + L I +L Sbjct: 471 -ELQQHEQVHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA 529 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASS 285 + L + LF + ++ T +L D IL+ S Sbjct: 530 GEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLKYQSPIVDDILDYRQIS 588 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 +N L + + +DG++ + TGR S QN+P Sbjct: 589 KIQSTYINGLLDYIQADGKIHTRF-LQTLTATGRLSSVEPNLQNIP-------------- 633 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + L D + +E RVLA ++ E ++AF Sbjct: 634 ----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKE 683 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T K F +D+V+ R K + + Y G AK + Sbjct: 684 GYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFI 743 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + + + + + ++ A+ + Sbjct: 744 NNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPI 803 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDL 524 G+A +++K A K + +LQ+ +L Sbjct: 804 QGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 839 >gi|262202783|ref|YP_003273991.1| DNA polymerase I [Gordonia bronchialis DSM 43247] gi|262086130|gb|ACY22098.1| DNA polymerase I [Gordonia bronchialis DSM 43247] Length = 949 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 102/576 (17%), Positives = 183/576 (31%), Gaps = 86/576 (14%) Query: 33 CAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 A A D D T A L L D + H K + S+ Sbjct: 365 LAIAAADGTSAYVDVTAVDADDEQALADWLADPAMGKALHEV--------KWGIHALRSR 416 Query: 92 RWIC-----TSVLARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPP 144 W + LA P + LAL + + ++G + D Sbjct: 417 GWTLAGVTSDTSLAAYIVRPGQRTFNLDDLALRYLRRELRADDGSG-DGQLSLLDDDGGA 475 Query: 145 YDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLD 204 + ++ ++ + L L++ E L + + G +D+D Sbjct: 476 AKLAEQHMLE--ARAVVELAEVLDTELDRIDSLPLLTEMELPLAFVLADLEAAGIAVDVD 533 Query: 205 LVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------S 257 +L++ AQ + + I + L+ LF + Sbjct: 534 HFGELEKNFAQRIRVAANAAYDVIGEQI-NLGSPKQLQTVLFDKLDMPKTKKTKTGYTTD 592 Query: 258 EGTLKSI---LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 L+++ H + L + RL + ++ L ++V+ DGR+ T A Sbjct: 593 ADALQALYEKTEHPFLAHLLEHRDATRLKVT------VDGLLKSVADDGRIHTTFNQTIA 646 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTI-------------QALNRGETIADPLGLAS 361 + TGR S QN+P + + + Q G + D +G S Sbjct: 647 A-TGRLSSTEPNLQNIPVRTAAGREIRQGFIVGAGSGASGDGGVGAGSGASGPDGVGAGS 705 Query: 362 DCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +G L+ AD + IE R++A ++ + I+AF GED++ ++AF P Sbjct: 706 GSSGHDGGTGDGFDCLMTADYSQIEMRIMAHLSEDAGLIEAFNTGEDLHNFVGSRAFGVP 765 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 ID+V+ E R K M L Y G A K + + + Sbjct: 766 IDEVTTEMRHRVKAMSYGLAYGLSAFGLAAQLKISRDEAKEQMDAYFARFGGVRDYLHDV 825 Query: 477 QAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQ 515 AE+ + + A+ + GTA +++K A H+ Sbjct: 826 VAEARRNEYTATLFGRRRYLPDLNSDNWQRRQSAERMALNAPIQGTAADIIKVAMINVHK 885 Query: 516 G----------VLQLWKDLTEGFACVVQEGGSISAR 541 +LQ+ +L A ++ R Sbjct: 886 RLQSEELRSRMLLQVHDELVVEVATGERDAVEAVVR 921 >gi|225849884|ref|YP_002730118.1| DNA polymerase I [Persephonella marina EX-H1] gi|225644858|gb|ACO03044.1| DNA polymerase I [Persephonella marina EX-H1] Length = 584 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 101/562 (17%), Positives = 190/562 (33%), Gaps = 123/562 (21%) Query: 2 SKLFIDIE----TRSPQPLPKVGVWAYAEQAVITLC---AYAWDDEPVKLWDRTEQSAMP 54 LFID E + I L Y+ + ++D Sbjct: 23 KYLFIDTEVAVKSFEDIDFFN---------DKIRLIQIGNYSK----IFVYDMFRIPQFS 69 Query: 55 SDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACL 114 L + L ++ V+ HN F+ K G I + T + ++ S K++ Sbjct: 70 EHLKELLENKGVI--GHNLKFDIKFLKTNFG--IFPQIVFDTMIASQLLSEDSREKHSLS 125 Query: 115 ALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF 174 AL++ +++ + + + Y +DV+ RE+F Sbjct: 126 ALSYRLTDNHLDKSQQ----------------RSPWGIKNLTEEQLRYAAKDVQVLREIF 169 Query: 175 KRLIP------------------------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQ 210 L ++ E I RG +D L+ + Sbjct: 170 PVLRDELNRIETPHKATGKIHETFGLDNGVAVVEMAFVPQLADIELRGMPVDEKLLKDML 229 Query: 211 ELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNI 270 + ++ + ++ D V+ S ++ +L G+ L +G+L S S + Sbjct: 230 QKVSTDYQREYIDFVRRYGVDPFSPQKVTN---WLTSKLGLKLPTTQKGSLSS--QDSAL 284 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSS--DGRLRGTLQFYGASRTGRWSGCVFQPQ 328 + + +L S L+ L E + +GR+ + GA TGR + Q Sbjct: 285 RRYIDREEVRKLLHIRSEKKILDKLKELKAHLINGRIYTQFKQIGAP-TGRMASMRPNLQ 343 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+ R +R GKKL+VAD + IE R+ Sbjct: 344 NITRD------------------------------LRVLFRPPEGKKLIVADYSQIELRI 373 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 A ++ IKAF+ G+D++ T + D+++K++R + K + L Y + Sbjct: 374 AAEYVNDETMIKAFSEGKDLHRFTASLILGKEYDQITKDERQMAKAINFGLIYGISPRSL 433 Query: 449 KTMASH-CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEF--------------- 492 A + G+D+ + + FE ++ +S H +++ E Sbjct: 434 MEYARNSYGVDISLKDAQIFHSRFFEVYKGFKSWHDRVKEYLKEHNKMVVYTLLGRRMVV 493 Query: 493 -----AVKDKLIGTACELVKKA 509 AV + GT +L+K A Sbjct: 494 RRFTEAVNFPVQGTGSDLLKMA 515 Score = 38.9 bits (89), Expect = 2.9, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL 647 VQ D+L + K IV VHDEI+ E ++ + + Sbjct: 504 VQGTGSDLLKMAVVFFGKLKEDRDAGIVNLVHDEIIVECSESIADEIRDI 553 >gi|302546246|ref|ZP_07298588.1| DNA polymerase I [Streptomyces hygroscopicus ATCC 53653] gi|302463864|gb|EFL26957.1| DNA polymerase I [Streptomyces himastatinicus ATCC 53653] Length = 477 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 72/423 (17%), Positives = 136/423 (32%), Gaps = 74/423 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 LSD E L + G D D + ++++ A ++ ++ + Sbjct: 74 LSDVELPTSELLARLERSGIAADRDWLDRMEQQFAGAVQQAVKEAHAAVGHEF-NLGSPK 132 Query: 240 ALRMYLFLITGIDLVDM-------SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL 292 L+ LF G+ L + ++ +L ++ +R + + + Sbjct: 133 QLQEVLFGELGLPKTKKTKTGYTTDADALAWLAGQTD-HELPVIMLRHREQARLRST--V 189 Query: 293 NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGET 352 L + +S GR+ T A+ TGR S QN+P + Sbjct: 190 EGLIKTISPGGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT------------------ 230 Query: 353 IADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +R + G + L+ AD + IE RV+A ++ +D I+AF +GED++ T Sbjct: 231 ------DEGRAIRRGFVVGEGFESLMTADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTT 284 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVK 467 ++ F +V E R K M L Y G + A + F + Sbjct: 285 VASQVFGVAKSEVDPEMRRKIKAMSYGLAYGLSAFGLSGQLGIGADEARRLMDTFFERFG 344 Query: 468 STSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELV 506 + E+ + ++ A+ + GTA ++V Sbjct: 345 GVRDYLQRVVEEARAIGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIV 404 Query: 507 KKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHI 560 K A + ++ + + + G V LV R + Sbjct: 405 KIAMLKVDAALTAGELSSRMLLQVHDEIVLEIAPGER------ERVEELVRREMAGAFQL 458 Query: 561 VLP 563 P Sbjct: 459 RAP 461 Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 52/274 (18%), Positives = 90/274 (32%), Gaps = 27/274 (9%) Query: 396 DWKIKAFANGEDIYV-------TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVF 448 + IK + G I+ T + P + + G+ + G + Sbjct: 190 EGLIKTISPGGRIHTTFNQTVAATGRLSSTDPNLQNIPVRTDEGRAIRRGFVVGEGFESL 249 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 T A + ++L+ + + E + E H + Q + G A V Sbjct: 250 MT-ADYSQIELRVMAHLSEDDGLIEAFTSGEDLHTTVASQ---------VFGVAKSEVDP 299 Query: 509 AWRAKHQGVLQLWKDLTEGFACVVQEG-GSISARRVANVPRLVMRRHKRDVHIVLPSSRR 567 R K + + F Q G G+ ARR+ + + + V+ +R Sbjct: 300 EMRRKIKAMSYGLAYGLSAFGLSGQLGIGADEARRLMDTFFERFGGVRDYLQRVVEEARA 359 Query: 568 LVYSDVK-GDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN----- 620 + Y++ G YL TS + R ++ N +Q + DI+ M Sbjct: 360 IGYTETMLGRRRYLPDLTSDNRQRREMAERMALNAPIQGTAADIVKIAMLKVDAALTAGE 419 Query: 621 -GYDIVLTVHDEIVSETPDTPYFSVGTLCSL-MT 652 ++L VHDEIV E V L M Sbjct: 420 LSSRMLLQVHDEIVLEIAPGERERVEELVRREMA 453 >gi|291301241|ref|YP_003512519.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] gi|290570461|gb|ADD43426.1| DNA polymerase I [Stackebrandtia nassauensis DSM 44728] Length = 908 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 88/530 (16%), Positives = 169/530 (31%), Gaps = 85/530 (16%) Query: 61 LRDETVMCVAHNSL-FERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D T H++ F +D + LA P ++ AL Sbjct: 391 LADPTATKAVHDAKRFGLACRSHGWNLD----GVTSDTALAAYLVRPDLKSDSLEALATR 446 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYD--CTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 ++ A ++D D A ++ A ++ Sbjct: 447 YLGRELNPRTAAAQ----PTLDGLETDGENEAAANLAALAAATRDLAEVLDGELASHNAA 502 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 L+D E + + + G D+ + L+ A E + D + R Sbjct: 503 GLLADMELPVMTVLTEMEAIGITADVAHLTGLESTFAAEAAEAVAAAHAAVDQTF-NLRS 561 Query: 238 TYALRMYLFLITGIDLVDMSE----------GTLKSILSHSNITQLAKDLILNRLASSGS 287 L+ LF G+ ++ L + H + + + +L + S Sbjct: 562 PKQLQEILFDKLGMPKTKRTKTGYTTDADSLAGLYATTQHPVLEAILRHRDREKLKQTVS 621 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 L V+ DGR+ T Q A+ TGR S QN+P + Sbjct: 622 ------GLLAEVAEDGRIHTTYQQNVAA-TGRLSSKDPNLQNIPVRT------------- 661 Query: 348 NRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 A +R I + G + L+ D + IE R++A ++G++ I+AF +GE Sbjct: 662 -----------DAGRRIRQGFIVTEGFETLMTCDYSQIEMRIMAHLSGDEGLIEAFKSGE 710 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 D++ T A+ FN V EQR K M L Y G ++ ++++ Sbjct: 711 DLHTTVAARVFNVEPGSVDAEQRRRIKAMSYGLAYGLSAYGLSQQLGITPEEARGLMEEY 770 Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501 + E+ + +D A+ + G+ Sbjct: 771 FTRFGGVRDYLRTVVEEARKAGYTETMFGRRRYLPDLNSDNRQRRDMAERAALNAPIQGS 830 Query: 502 ACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVAN 545 A +++K A H+ ++ ++ + + + G + ++ Sbjct: 831 AADIMKIAMLNVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLVR 880 Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 8/121 (6%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDV-KGDCSYLNTATSQLMRERTYGG 595 AR + + + V+ +R+ Y++ G YL S + R Sbjct: 760 PEEARGLMEEYFTRFGGVRDYLRTVVEEARKAGYTETMFGRRRYLPDLNSDNRQRRDMAE 819 Query: 596 KLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 + N +Q + DI+ M N + ++L VHDE+V E V L Sbjct: 820 RAALNAPIQGSAADIMKIAMLNVHRALVAAKVKSRVLLQVHDELVLEIAPGEAPEVEKLV 879 Query: 649 S 649 Sbjct: 880 R 880 >gi|156086202|ref|XP_001610510.1| DNA polymerase I [Babesia bovis T2Bo] gi|154797763|gb|EDO06942.1| DNA polymerase I, putative [Babesia bovis] Length = 1613 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 105/543 (19%), Positives = 187/543 (34%), Gaps = 100/543 (18%) Query: 12 SPQPLPKVGV-WAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPS-----DLLQYLRDET 65 + G+ E I L + D+P + D + +P+ L++ L + Sbjct: 1059 CTLDIETTGLNHR--ED-RIRLLQISTPDQPSVVIDVFK-VPVPTLKECTWLVKLLGSQA 1114 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKM 125 V V HN F+ K I +++A + +C Sbjct: 1115 V-KVLHNGKFDINFLSH---NGFNVKGPIFDTMIAAKLLSATRFNWSCKL---------- 1160 Query: 126 EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF---------KR 176 G S + + ++ Y RD L+ +R Sbjct: 1161 --GHVAERYLNIVLDKSQQF--SDWTLDPLFEEQVIYASRDTAVLLPLYFILQEKLKAER 1216 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE---DIVKLTDGIIR 233 L ++D E L + G ++DLD + LQ + +E + + D + ++ Sbjct: 1217 LDMIADIENKCVLAVCQMEQNGIKVDLDKLKSLQAALDKENETAMKHLGDTLGVSSNPNF 1276 Query: 234 SSRQTYALRMYLFLITGID------LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGS 287 + + L +D + D SE TL H I L + N+ ++ + Sbjct: 1277 NYNSQRQILQALQQQKVMDKTRRGLIQDTSERTLSRNTYHPAIQALREYRKTNKAVTAFT 1336 Query: 288 AILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + + S GR+ + GA +GR+S Q +PR R Sbjct: 1337 -----EKIPNHIDSATGRIYPNINQIGA-ESGRFSCDNPNLQQIPRDSR----------- 1379 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 R C IA G KLV+AD + IE R+ A IA + I+A+ +GE Sbjct: 1380 -----------------FRECFIADKGNKLVIADFSQIELRIAADIAEDRRMIEAYNSGE 1422 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH-CGLDLQQFSQN 465 D++ T + N PI +V+KE+R + K + L + F+ A G+ L + Sbjct: 1423 DLHSLTASLVKNKPISEVTKEERQLAKAVNFGLIFGMSLAGFRNYAESCYGVVLSVPAAR 1482 Query: 466 VKSTSTFEDWEQAESHHLWMQDQYP------------------EFAVKDKLIGTACELVK 507 S F+ + + H M+ P ++ + GT+ ++ K Sbjct: 1483 EIYDSFFKSYSGITAWHERMKAAKPISVRTLSNRLSVFDQFSFTRSLNYPVQGTSADITK 1542 Query: 508 KAW 510 +A Sbjct: 1543 EAM 1545 >gi|91070081|gb|ABE11006.1| DNA polymerase I [uncultured Prochlorococcus marinus clone ASNC612] Length = 421 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 63/386 (16%), Positives = 124/386 (32%), Gaps = 77/386 (19%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + + G ID+ + KL + + + ++ + +L++ S Sbjct: 2 YEEIELPLEPVLSQMEMNGITIDIPYLDKLSKELKSTLEDIESKVYELSEENFNLS-SPK 60 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NT 294 L LF +D + + +L + + + + KL + Sbjct: 61 QLGEILFEKLNLDKKKSRKTKTGWSTDAVVLERLVDEHEIIQHLIKHRTLTKLLSTYIDA 120 Query: 295 LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L ++ GR+ A+ TGR S QN+P + Sbjct: 121 LPNLINEKTGRVHTNFN-QAATATGRLSSSNPNLQNIPVRT------------------- 160 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 S +R + KL+ AD + IE R+LA +A E+ I AF +DI+ T Sbjct: 161 -----EFSRRIRKAFLPEKNWKLLSADYSQIELRILAHLADEEILINAFHKNDDIHSLTA 215 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMAS----HCGLDLQQFSQNVKST 469 F + +S ++R +GK + + Y G K F L ++ + Sbjct: 216 KLIFEK--EVISSDERRVGKTINFGVIYGMGIKKFARSTGVSIPEAKEFLIKYKERYSKI 273 Query: 470 STFEDWEQ---------------------------------------AESHHLWMQDQYP 490 F + ++ + M+ Q Sbjct: 274 FKFLELQERLALSKGYVKTIFGRKREFKFDKNGLGRLIGKDPYEIDLQSARRAGMEAQSL 333 Query: 491 EFAVKDKLIGTACELVKKAWRAKHQG 516 A + G++ +++K A ++ Sbjct: 334 RAAANAPIQGSSADIIKIAMVQLNKK 359 >gi|149917649|ref|ZP_01906145.1| DNA polymerase I [Plesiocystis pacifica SIR-1] gi|149821431|gb|EDM80831.1| DNA polymerase I [Plesiocystis pacifica SIR-1] Length = 898 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 104/547 (19%), Positives = 186/547 (34%), Gaps = 90/547 (16%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKK-TLGIDIPSKRWICTSVLARTNGL-PS 107 A + L +L D + H+ + ++ + + + S L N L P Sbjct: 362 GEAGLAKLRPWLEDPKRYKLGHDCKASWVALRRKGVALAGIVGDTMIESFLVEPNKLIPH 421 Query: 108 SLKNACLA---LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 L + GK L + P+ CT+ V F E + Sbjct: 422 RLDQLTKEYLQRTIPPQKRILGSGKRLKRFSQLDAEALAPWCCTQVEAVA--AAFVEIRE 479 Query: 165 R-DVEATRELFKRL-IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDE 222 R D E R+ +++ +PLS W+L Q + G ID + + K+ E + KL++ Sbjct: 480 RLDAEGHRDTLEQVSLPLS------WVLGQ-MELDGVAIDSEDLGKMSEEFGERLAKLEK 532 Query: 223 DIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSNITQ--L 273 I ++ + L LF + ++ ++ L+ + + + + Sbjct: 533 TIFEIAGREFNIASS-KQLGAVLFDELELPVIKRTKTGYSTNAEVLERLAGKTKHPKHTI 591 Query: 274 AKDLILNRLASSGSAILKLNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 AK L+ +R + + L AV+ D GR+ T Q A +GR Q P Sbjct: 592 AKYLLEHR-KLAKLINTYTDVLQAAVNPDSGRIHATFQ-QTAGVSGRLITTEPDLQRTPI 649 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWI 392 + VR + G KL+ AD + IE R+LA Sbjct: 650 KT------------------------PEGKRVRQAFVTRPGYKLISADWSQIELRLLAHF 685 Query: 393 AGEDWKIKAFANGEDIYVTTYAKAFNT--PIDKVSKEQRAIGKVMELALGYQGGAKV--- 447 + + ++AFA G D++ T A+ F +KVS+EQR +GK++ A Y GA Sbjct: 686 SSDAHLVEAFAKGLDVHARTAAQLFEVGGGPEKVSREQRGVGKLVNFATIYGQGATALGQ 745 Query: 448 -FKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES---------------------HHLWM 485 K + + + D A++ ++ Sbjct: 746 ILKVPRKQAQAYIDGYFAYYSGVRDWLDGTMAQANVDGFVETLLGRRRYIPELSSNNWQD 805 Query: 486 QDQYPEFAVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEG 535 + A + G+A ++ K A + + +LQ+ +L E Sbjct: 806 RQAGERIAANTPIQGSAADICKLAMLGIDRQLRAQKLTTRMLLQIHDELVFEAPVAEVEA 865 Query: 536 GSISARR 542 R Sbjct: 866 VVAIVRG 872 >gi|325912106|ref|ZP_08174504.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] gi|325476056|gb|EGC79224.1| DNA-directed DNA polymerase [Lactobacillus iners UPII 143-D] Length = 883 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 70/536 (13%), Positives = 160/536 (29%), Gaps = 88/536 (16%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLP-------SS 108 L + L D+ + + + ++ +DI +LA Sbjct: 363 PLKKILEDKNIAKQVFDLKRNYVGLQR---LDITLSNVTDDIMLASYIADSENNARDIGV 419 Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 L N+ +GK + + T+ + + + Sbjct: 420 LANSYQESYVQSDEIIYGKGK---KQHSVDVDTLYAHMATKVDVLDKLKAKIMP------ 470 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + +++ + E + ++ + G ++ ++K++ + L I +L Sbjct: 471 -ELQQHEQVHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLA 529 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLAS 284 + L + LF + ++ ++ + + + D++ R S Sbjct: 530 GEKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQIS 588 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + +N L + + +DG++ + TGR S QN+P Sbjct: 589 KIQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP------------- 633 Query: 345 QALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R + L D + +E RVLA ++ E ++AF Sbjct: 634 -----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFK 682 Query: 404 NGEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLD 458 G DI+ T K F +D+V+ R K + + Y G AK Sbjct: 683 EGYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNF 742 Query: 459 LQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDK 497 + + + + + + ++ A+ Sbjct: 743 INNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSP 802 Query: 498 LIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 + G+A +++K A K + +LQ+ +L + I ++ Sbjct: 803 IQGSAADIIKIAMIKMQSELERRKLKTKMILQIHDELLFDVPSEELDLIKILVPKI 858 >gi|329767425|ref|ZP_08258950.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] gi|328836114|gb|EGF85805.1| hypothetical protein HMPREF0428_00647 [Gemella haemolysans M341] Length = 879 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 61/362 (16%), Positives = 121/362 (33%), Gaps = 59/362 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E + + + G + + ++ + K L+ I L + L Sbjct: 480 DIEIKVAKVLANMEFEGIHVSKKALEEMSAEFDERIKTLESSIYTLAGSEFNIA-SPKQL 538 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296 + LF G+ + ++ + + + QL + L I KLN+ L Sbjct: 539 GVVLFEDLGLPPIKKTKTGYSTAVE--VLEQLQHSHEIIPLIMEYRTITKLNSTYAKGLV 596 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + ++ +G++ + A +TGR S QN+P + Sbjct: 597 KDITREGKIHTRYEQTLA-QTGRLSSVNPNLQNIPTR----------------------- 632 Query: 357 LGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R + AS + ++ D + IE RVLA IA + I AF + DI+ T + Sbjct: 633 -IEEGKKIRKAFVPASEDRVILSIDYSQIELRVLAHIAQDKGMIDAFKHDVDIHTKTASD 691 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST-S 470 +D+V+ R K + + Y G + + ++ + K Sbjct: 692 VNGVSLDQVTSSMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFKGVDK 751 Query: 471 TFEDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW 510 D + H +++ + A+ + GTA +++K A Sbjct: 752 YMTDIVEFAKEHGYVETLFNRRRALPDINAKNKIVANLNARIAMNSPIQGTAADIIKIAM 811 Query: 511 RA 512 Sbjct: 812 VN 813 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLMTKN 654 +Q + DI+ M N TK ++L VHDE++ + + +M + Sbjct: 799 IQGTAADIIKIAMVNVFEYLEKTKVDAKLLLQVHDELIFDVNKDIEEDFTKEMIKIMEEA 858 >gi|313673235|ref|YP_004051346.1| DNA polymerase i [Calditerrivibrio nitroreducens DSM 19672] gi|312939991|gb|ADR19183.1| DNA polymerase I [Calditerrivibrio nitroreducens DSM 19672] Length = 791 Score = 204 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 67/464 (14%), Positives = 153/464 (32%), Gaps = 84/464 (18%) Query: 109 LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVE 168 LKN E + + D+ T + ++++ K + Sbjct: 320 LKNIIKNHKIDTDQLVDFEIISWLT-----DPDTGTIKFTDKDTLESFFEKILQKKEFIL 374 Query: 169 ATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + + + E + + + G ++ + + E I + + I ++ Sbjct: 375 DRMDKYNLWELYNKVEHKIIHILSEMEQTGILLNSKQLKETDEKIKELLNNEKKAIDEML 434 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILS---------HSNITQLAKD 276 I + L LF + ++ T + L + + + K Sbjct: 435 GEEI-NLNSPKQLSFVLFEKLKMVPFKKNKTGYSTDEDSLRNMIFLNPSYENLLKSILKY 493 Query: 277 LILNRLASSGSAILKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQER 335 ++L S+ ++ LS+ + S GR+ + G + TGR S QN+P++ Sbjct: 494 REFSKLISTYTSK-----LSDYIDRSTGRIHTQFKQTG-TATGRLSSVNPNLQNIPQK-- 545 Query: 336 SEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGE 395 G +RS ++ G + D + IE R+LA I+ + Sbjct: 546 ----------------------GELGSEIRSAFVSKEGYSFLSIDYSQIELRILAHISDD 583 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 + AF DI+ T K F +++++ R I K + + Y G ++ Sbjct: 584 ENLKIAFEQDFDIHTMTAMKVFGLLESEITRDIRRIAKAVNFGIIYGLSPYGLSRDVGIP 643 Query: 452 ASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYP 490 S + ++++ + + + +S + ++ + Sbjct: 644 QSEAKIFIKKYFETYPNVKKYMKEIVKKAENDGYVTTILNRPRFIPDIKSANNTIKQRAE 703 Query: 491 EFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWKDL 524 A+ + G+A +++K A + +LQ+ +L Sbjct: 704 RIAINSPIQGSAADIIKLAMIKSDKYLKRMQIDGKLILQVHDEL 747 Score = 39.3 bits (90), Expect = 1.9, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 37/130 (28%), Gaps = 17/130 (13%) Query: 533 QEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR---RLVYSDVKGDCSYLNTATSQ-LM 588 Q I ++ V + K V L D N Q Sbjct: 644 QSEAKIFIKKYFETYPNVKKYMKEIVKKAENDGYVTTILNRPRFIPDIKSANNTIKQRAE 703 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATK--NGYDI----VLTVHDEIVSETPDTP-Y 641 R +Q + DI+ M + K I +L VHDE+V E D Sbjct: 704 RIAINSP------IQGSAADIIKLAMIKSDKYLKRMQIDGKLILQVHDELVFEINDKYID 757 Query: 642 FSVGTLCSLM 651 + + +M Sbjct: 758 KTSKDIKVIM 767 >gi|203284454|ref|YP_002222194.1| DNA polymerase I [Borrelia duttonii Ly] gi|201083897|gb|ACH93488.1| DNA polymerase I [Borrelia duttonii Ly] Length = 922 Score = 204 bits (519), Expect = 3e-50, Method: Composition-based stats. Identities = 75/493 (15%), Positives = 155/493 (31%), Gaps = 87/493 (17%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNF 118 L + + N F+ + K+ G ++ S + T + A SL A Sbjct: 409 LFNSQPKLIGQNYKFDYKVLKRH-GFNVISA-YFDTMIAAYVIDPNTKVSLDFLA-AKYL 465 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K EE P T + ++ Y D + T LF L Sbjct: 466 MHKNIKYEEI--------------VPQHSTLKDIPL--EIASNYAAEDADITFRLFNILR 509 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + + E + + + G +D + + + + QE K ++ ++++ Sbjct: 510 KKLKEDNLESLMKNIEMPFSNVIIEMEENGIYLDSNYLTQYGHELEQELKTIENEVIQSI 569 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + L LF I + + T +L + + ++N + Sbjct: 570 GIEF-NLNSSKQLHTILFEKLNIIVPKNVKQDSTDIKVLETIKDQHESIEKLINYRQLAK 628 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344 + L E ++ ++ + TGR S QN+P + ER Sbjct: 629 LKNTYTDNLIEFINEKTNKIHTNF-IQTKTATGRISSTAPNLQNIPIKNER--------- 678 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R+ + G + AD + IE +LA ++ ++ I+AF + Sbjct: 679 ----------------GRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTH 722 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460 +DI++ T +K F ++ R I K + + Y+ A + + Sbjct: 723 KKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKREEAQNFID 782 Query: 461 QFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLI 499 + TF + S + + A+ + Sbjct: 783 SYFNLYSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMAINSIIQ 842 Query: 500 GTACELVKKAWRA 512 G+A +++K A Sbjct: 843 GSASDIMKIAMIK 855 Score = 44.7 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 +I+Q + DI+ M I+L VHDE++ E+P+ + M Sbjct: 837 INSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKAQIIIKEM 896 Query: 652 TKN 654 +N Sbjct: 897 MEN 899 >gi|254995381|ref|ZP_05277571.1| DNA polymerase I [Anaplasma marginale str. Mississippi] Length = 850 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 134/390 (34%), Gaps = 65/390 (16%) Query: 173 LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L RL + ER L + + + G +D +++ +L + + L+++I L Sbjct: 439 LLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCT 498 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASS 285 + L LF G+ + + +T+LA D +L S Sbjct: 499 F-NVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFS 557 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V + + T ++ TGR S QN+P + + Sbjct: 558 KLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSK---------- 607 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G KLV AD + +E +++A IAG AF+ G Sbjct: 608 --------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEG 653 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 +DI++ T + F + E R K + + Y AK + Q Sbjct: 654 KDIHMVTAQQIFGDGVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQ 711 Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500 + ++ ++ + +A + ++ A+ + G Sbjct: 712 YFRSYPEIKSYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQG 771 Query: 501 TACELVKKAWRAKHQG------VLQLWKDL 524 TA ++VKKA +LQ+ +L Sbjct: 772 TAADVVKKAMINLRNKLEVGAIILQVHDEL 801 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612 K + + +R+ Y+ G Y++ S+ R + + N +Q + D++ + Sbjct: 720 KSYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 779 Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 M N I+L VHDE++ E P++ V + LM Sbjct: 780 AMINLRNKLEVGAIILQVHDELLVEVPESH---VDRVAKLM 817 >gi|317495649|ref|ZP_07954016.1| DNA polymerase I [Gemella moribillum M424] gi|316914268|gb|EFV35747.1| DNA polymerase I [Gemella moribillum M424] Length = 873 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 60/373 (16%), Positives = 127/373 (34%), Gaps = 59/373 (15%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 + E + + + G + + + + + + K L+ I L + L Sbjct: 474 NIEVKVARVLANMEYEGIHVSKKALEDMSDELDERIKILEASIHTLAGSEFNIA-SPKQL 532 Query: 242 RMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT-----LS 296 + LF G+ V ++ + + + QL + L + KLN+ L Sbjct: 533 GIVLFEDLGLPPVKKTKTGYSTSVE--VLEQLQHSHEIIPLIMEYRVLTKLNSTYAKGLV 590 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + ++ G++ + ++TGR S QN+P + Sbjct: 591 KDITRKGKIHTRYE-QTLTQTGRLSSVNPNLQNIPTR----------------------- 626 Query: 357 LGLASDCVRSCII-ASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R I AS+ + ++ D + IE RVLA +A + I AF + DI+ T ++ Sbjct: 627 -IEEGKKIRKAFIPASDDRVILSIDYSQIELRVLAHMAQDKGMIDAFTHDLDIHTKTASE 685 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTST 471 +D+V+ R K + + Y G + + ++ + + Sbjct: 686 VNGVSLDEVTPTMRREAKAVNFGIVYGISDFGLSNNLGITRKRAKEFIDKYLETFSGVNK 745 Query: 472 FE-DWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAW 510 + D + H +++ Y A+ + GTA +++K A Sbjct: 746 YMTDIVEFAKEHGYVETLYNRRRALPEINAKNKIVASLNARLAMNTPIQGTAADIIKLAM 805 Query: 511 RAKHQGVLQLWKD 523 + + D Sbjct: 806 INAFDYIEKTKVD 818 Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 11/73 (15%) Query: 602 VQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDT--PYFSVGTLCSLMTK 653 +Q + DI+ M NA TK ++L VHDE++ + F++ + +M + Sbjct: 793 IQGTAADIIKLAMINAFDYIEKTKVDAKLLLQVHDELIFDVNKDVVDEFTI-EMVKIMEE 851 Query: 654 NPSWAKGLPLKAE 666 + LKAE Sbjct: 852 AVE--LDVKLKAE 862 >gi|239917614|ref|YP_002957172.1| DNA polymerase I [Micrococcus luteus NCTC 2665] gi|239838821|gb|ACS30618.1| DNA polymerase I [Micrococcus luteus NCTC 2665] Length = 937 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 74/406 (18%), Positives = 139/406 (34%), Gaps = 72/406 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV----KLTDGIIRSS 235 L + E L L + G +D+D + L+E E + T G+ + Sbjct: 526 LQELEIPLSRLLARMELAGIAVDVDALTDLREDFTAAADAAKESAWASVAEETGGMQVNL 585 Query: 236 RQTYALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAIL---K 291 L+ LF + ++ G + S ++ + + L L + A Sbjct: 586 GSPKQLQEVLFERLNMPRTRKTKTGYSTDVDSLQDLLEQTRHPFLENLMAHRDATKLRQT 645 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 + L E V+ D R+ T A+ TGR S QN+P + + Sbjct: 646 VEGLLETVAPDDRIHTTYS-QTAAATGRLSSLHPNLQNIPVRTEA--------------- 689 Query: 352 TIADPLGLASDCVRSCIIA----SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +R +A L+ AD + IE R++A ++ ++ I+AF GED Sbjct: 690 ---------GRRIREVFVADEVAGEQAVLLSADYSQIEMRIMAHLSEDEGLIQAFREGED 740 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 ++ ++ F D+V+ EQRA K M L Y G +K K ++ + Sbjct: 741 LHSFVGSQVFGVDPDEVTAEQRAKVKAMSYGLAYGLSSFGLSKQLKISVDEARGLMKGYF 800 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + A++ + ++D A+ + G+A Sbjct: 801 DRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERAALNAPIQGSA 860 Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSI 538 +++K+A + +LQ+ +L E + Sbjct: 861 ADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATA 906 Score = 42.4 bits (98), Expect = 0.23, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 9/125 (7%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 AR + + + V+ +R+ Y+ ++G YL +S + R + Sbjct: 791 EARGLMKGYFDRFGGVRDYLRDVVAQARQDGYTSTIEGRRRYLPDLSSDNRQLRDMAERA 850 Query: 598 TENI-VQAISRDILCEGMKNA----TKNGY--DIVLTVHDEIVSETPDTPYFSVGT-LCS 649 N +Q + DI+ M + ++G ++L VHDE++ E P L Sbjct: 851 ALNAPIQGSAADIIKRAMLDVQAGLEEHGLASRLLLQVHDELILEVPAAELEQATALLEE 910 Query: 650 LMTKN 654 M + Sbjct: 911 RMGRA 915 >gi|184200833|ref|YP_001855040.1| DNA polymerase I [Kocuria rhizophila DC2201] gi|183581063|dbj|BAG29534.1| DNA polymerase I [Kocuria rhizophila DC2201] Length = 960 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 71/435 (16%), Positives = 144/435 (33%), Gaps = 74/435 (17%) Query: 160 GEYCKRDVEATRELFK---RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 G C+ E R L + +L L++ E L ++ + G +D + L E + Sbjct: 525 GRACRELSEHLRALLEADGQLGLLTELEMPLAVILARMEATGIAMDRPGIDVLFEDLQHP 584 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSILSHSN 269 + E D + + T L+ +F G+ + ++ + Sbjct: 585 IDQAFEQAQAQIDHEV-NLGSTKQLQAVMFDELGLPKTKKTKTGYTTDASAVADLIGKVS 643 Query: 270 ITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 ++ + + LK + L +A++ DGR+ T Q A+ TGR S Sbjct: 644 PDTAGSRFLVALMNWREYSKLKQIVAGLRDAIAEDGRIHTTYQQTVAA-TGRLSSTGPNL 702 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-----KKLVVADLA 382 QN+P + +R + + L+ AD + Sbjct: 703 QNIPVRT------------------------EQGQRIRDVFVVGEDTQGPFECLMTADYS 738 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++G++ I+AF GED++ ++ F+ + V+ + R+ K M L Y Sbjct: 739 QIEMRIMAHLSGDEGLIEAFRGGEDLHRFVGSRVFDVAPEDVTPQMRSKVKAMSYGLVYG 798 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH----------------- 481 G ++ + + + F E+ Sbjct: 799 LSSYGLSQQLHIGVDEARTMMSGYFERFGGVRDFLRGVVEEARSKGYTETIDGRRRYLPD 858 Query: 482 ----HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH------QGVLQLWKDLTEGFACV 531 + + A+ + G+A +++KKA Q ++ + + Sbjct: 859 LTSDNRQARQAAERMALNAPIQGSAADIIKKAMIGVDRALRDGQLRSRVLLQVHDELIVE 918 Query: 532 VQEGGSISARRVANV 546 V G R+ Sbjct: 919 VAPGEREEVERILRT 933 Score = 45.5 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 9/160 (5%) Query: 497 KLIGTACELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 ++ A E V R+K + + L L+ G AR + + + Sbjct: 771 RVFDVAPEDVTPQMRSKVKAMSYGLVYGLSSYGLSQQLHIGVDEARTMMSGYFERFGGVR 830 Query: 556 RDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEG 613 + V+ +R Y++ + G YL TS + R ++ N +Q + DI+ + Sbjct: 831 DFLRGVVEEARSKGYTETIDGRRRYLPDLTSDNRQARQAAERMALNAPIQGSAADIIKKA 890 Query: 614 MKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTL 647 M + ++L VHDE++ E V + Sbjct: 891 MIGVDRALRDGQLRSRVLLQVHDELIVEVAPGEREEVERI 930 >gi|172054918|ref|YP_001806245.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] gi|171701199|gb|ACB54179.1| DNA polymerase I-like protein [Cyanothece sp. ATCC 51142] Length = 662 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 112/559 (20%), Positives = 183/559 (32%), Gaps = 100/559 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 +DIET P + I+L A + PV L + L +++ Sbjct: 71 LDIETTGLDPHT----------SEISLIQIAAPNRPVILIEF-RGITNKETLRRFIEHPK 119 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACL--ALNFSEH 121 + V HN FE K LGI+ WI T ++++ GLP +L+ L + Sbjct: 120 IPKVGHNLAFEIQFLTKHLGINPAKTAWIDTMLMSQLLAAGLPPTLEEDAKTGVLPIPDL 179 Query: 122 LTKMEEGKALIARFCKGSIDSP----------PYDCTRANHVQAW-----QLFGEYCKRD 166 ++ K L + S Y ++ V W Q +Y D Sbjct: 180 TRSIKNKKKLKQELNRNLPGSYSLMRVVARELGYSLDKSLQVSDWGKPLTQEQLQYAAND 239 Query: 167 VEATRELFK---------RLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 L + +L E + G +DLD +L + I R Sbjct: 240 AAVVLPLREALRNKIIDNQLTDAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIETRR 299 Query: 218 KKLDEDIVK----------LTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 + + + L G + + L GI S+ TL + Sbjct: 300 EDAAKIACQVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTDSTSKDTLDKLSE 358 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 + +I R S + L V+ R+ + A+ +GR+S Sbjct: 359 NH---PEVFTIIEYR-HWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAA-SGRFSFSNP 413 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 Q +PR RSC + + G KL++AD + IE Sbjct: 414 NLQQIPR----------------------------ERQYRSCFVPAPGYKLIIADYSQIE 445 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+ A IA + I A+ N +D++ T A ID+V+K++R +GK + L Y GA Sbjct: 446 LRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKDIDEVTKQERQLGKAVNFGLIYGMGA 505 Query: 446 KVFKTMASHCGLDLQQFSQNVK-STSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + A F + + + F+ + H + VKD Sbjct: 506 TKLRIYAETNYGVSMTFDEAQRFRDNFFKGYPGLHQWHQDTACKLRTTKVKD-------- 557 Query: 505 LVKKAWRAKHQGVLQLWKD 523 G L+ WKD Sbjct: 558 ------IRTLSGRLRRWKD 570 >gi|257068663|ref|YP_003154918.1| DNA polymerase I [Brachybacterium faecium DSM 4810] gi|256559481|gb|ACU85328.1| DNA polymerase I [Brachybacterium faecium DSM 4810] Length = 904 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 65/434 (14%), Positives = 141/434 (32%), Gaps = 79/434 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E+ L + +T+++RG ID + L+E + + + + + Sbjct: 496 LDELEQPLQRVLETMHERGIAIDEQALAALREEFEGFVAQAKREAGAIVGEEVNLA-SPK 554 Query: 240 ALRMYLFLITGID---------------LVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 L++ LF + L D+ E H ++ L + +++L Sbjct: 555 QLQVVLFETLALPTTRKISSGHSTDAESLTDLQESLDPESSGHQFLSWLLRFREMSKL-- 612 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 L L + V + R+ T Q A+ TGR + QN+P + Sbjct: 613 ----TGYLVGLDKVVDAGSRVHTTFQ-QTAAATGRLASTEPNLQNIPVRT---------- 657 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFA 403 +R +A G + L+ AD + IE R++A ++ + I+AF Sbjct: 658 --------------AEGQRIRDAFVAGEGFETLLTADYSQIEMRIMAHLSEDAGLIEAFN 703 Query: 404 NGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +GED++ ++ F D V R+ K + L Y G ++ + + Sbjct: 704 SGEDLHNFVASRVFGVSPDAVDPAMRSKTKAVSYGLAYGLSAFGLSRQLRISRAEATALR 763 Query: 460 QQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKL 498 + + + + + ++ A+ + Sbjct: 764 DGYFERFGGVRDYLHHTVETARTTGYTETILGRRRYLPDLTSDNRQRRENAERVALNSPI 823 Query: 499 IGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 G+A +++K A + ++ + + V G R + Sbjct: 824 QGSAADIIKLAMLRVESRMRAAELSSRMLLQVHDELVVEVAAGELDQVREIVEEGMGSAY 883 Query: 553 RHKRDVHIVLPSSR 566 + + + + R Sbjct: 884 QLSVPLDVGVGIGR 897 Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 9/165 (5%) Query: 494 VKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGS-ISARRVANVPRLVMR 552 V ++ G + + V A R+K + V F Q S A + + Sbjct: 712 VASRVFGVSPDAVDPAMRSKTKAVSYGLAYGLSAFGLSRQLRISRAEATALRDGYFERFG 771 Query: 553 RHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDIL 610 + +H + ++R Y++ + G YL TS + R ++ N +Q + DI+ Sbjct: 772 GVRDYLHHTVETARTTGYTETILGRRRYLPDLTSDNRQRRENAERVALNSPIQGSAADII 831 Query: 611 CEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 M ++L VHDE+V E V + Sbjct: 832 KLAMLRVESRMRAAELSSRMLLQVHDELVVEVAAGELDQVREIVE 876 >gi|328907014|gb|EGG26780.1| DNA polymerase I [Propionibacterium sp. P08] Length = 920 Score = 204 bits (518), Expect = 4e-50, Method: Composition-based stats. Identities = 66/407 (16%), Positives = 128/407 (31%), Gaps = 74/407 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E + ++ G +D D++ L+ + + + I S Sbjct: 517 LHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAWEAAGEKINLS-SPK 575 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L+ LF + ++ H + L + +L + Sbjct: 576 QLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLEHRDAIKLRQT---- 631 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + + DGR+ T A+ TGR S QN+P + Sbjct: 632 --VDGLLKEIRDDGRVHTTYMQTIAA-TGRLSSKDPNLQNIPMRT--------------- 673 Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G + L+ AD + IE R++A ++G+ I AF +G+D Sbjct: 674 ---------EEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDF 724 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T + F + VS QR+ K M L Y G + K + + Sbjct: 725 HTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFS 784 Query: 465 NVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTAC 503 + + ++ +D A+ + G+A Sbjct: 785 RFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAA 844 Query: 504 ELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVA 544 +L+K A A Q ++ + + V + R++ Sbjct: 845 DLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 891 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + + G ++L VHDE++ E V + Sbjct: 839 IQGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 891 >gi|111018004|ref|YP_700976.1| DNA polymerase I [Rhodococcus jostii RHA1] gi|110817534|gb|ABG92818.1| DNA-directed DNA polymerase I [Rhodococcus jostii RHA1] Length = 914 Score = 204 bits (518), Expect = 5e-50, Method: Composition-based stats. Identities = 94/529 (17%), Positives = 166/529 (31%), Gaps = 86/529 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D H + + + G + LA P + L+L + Sbjct: 396 LADADQPKALHEAKWAMHALR---GRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRY 452 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 ++EE D + + A + D + + Sbjct: 453 LRRELRVEE-TGEEQLSLLDDADQVDAEAAETEILSARAVLDLAAALD--TELDNIESTA 509 Query: 179 PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 LS+ E L + I G +D + LQ A E E + I + Sbjct: 510 LLSEMELPLLEVLADIEASGIAVDGTHLHDLQSRFAAEVSAAAEAAYGVIGKQI-NLGSP 568 Query: 239 YALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKDLILNRLASSGSA 288 L++ LF + L+++ SH + L RL + Sbjct: 569 KQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRLKVT--- 625 Query: 289 ILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 ++ L + V+ DGR+ T A+ TGR S QN+P + Sbjct: 626 ---VDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-------------- 667 Query: 349 RGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 A +R + G L+ AD + IE R++A ++G++ I+AF GED Sbjct: 668 ----------DAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDEGLIEAFNTGED 717 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 ++ A+AF PI++V+ E R K M L Y G A K ++ + Sbjct: 718 LHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQMEAYF 777 Query: 464 QNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTA 502 + ++ + ++ A+ + GTA Sbjct: 778 ARFGGVRDYLHEVVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGTA 837 Query: 503 CELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 +++K A K + +LQ+ +L +E R Sbjct: 838 ADIIKVAMINVQRSLRDAGLKSRMLLQVHDELVLEVVDSEREQVEQLVR 886 >gi|257452007|ref|ZP_05617306.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|317058556|ref|ZP_07923041.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] gi|313684232|gb|EFS21067.1| DNA polymerase I [Fusobacterium sp. 3_1_5R] Length = 882 Score = 204 bits (518), Expect = 6e-50, Method: Composition-based stats. Identities = 79/410 (19%), Positives = 151/410 (36%), Gaps = 66/410 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 +EL L + E L + ++ +G +ID K + ++ L+++I K Sbjct: 473 EKELENVLW---ETELPLIPVLASMEKQGIKIDRKYFQKYSLELNEKLVLLEKEIWKEAG 529 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNIT--QLAKDLILNRLAS 284 + L LFL + ++ T +L + + Q+A +L+ R Sbjct: 530 EEF-NINSPKQLGEILFLKLNLPTGKKTKTGFSTDVEVLENLSSQGFQIATNLLEYR-KL 587 Query: 285 SGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTI 344 + ++ + + V R+ G + TGR S QN+P Sbjct: 588 AKLKNTYVDPIPKMVKFGDRIHTCYHQIG-TVTGRLSSSDPNLQNIP------------- 633 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R IA +G KL+ D + +E RVLA ++ ++ +KA+ Sbjct: 634 -----------VKTEEGIRIRQGFIARDGWKLLSIDYSQVELRVLAALSKDENLVKAYQE 682 Query: 405 GEDIYVTTYAKAFNTPI-DKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 +D++ T K F ++VS+EQR + K++ ++ Y G AK + Sbjct: 683 KQDLHSVTAKKIFELEEKEEVSREQRTMAKIINFSIIYGKTPFGLAKELGISVKDAAEYI 742 Query: 460 QQFSQNVKSTSTF--EDWEQAESH-------------------HLWMQDQYPEFAVKDKL 498 +++ + + F E E AE H + +++Q AV + Sbjct: 743 KRYFEQYPRVAQFETEIIEFAEQHGYVETYFGRKRIIDGIHSKNRMVKNQAERMAVNTVV 802 Query: 499 IGTACELVKKAWRAKHQGVL-----QLWKDLTEGFACVVQEGGSISARRV 543 GTA E++KK + +L L + + +QE + Sbjct: 803 QGTAAEILKKVMIKIYSWLLGKTDIYLLLQVHDELIFEIQEERVEEYVKT 852 >gi|283458187|ref|YP_003362804.1| DNA polymerase I [Rothia mucilaginosa DY-18] gi|283134219|dbj|BAI64984.1| DNA polymerase I [Rothia mucilaginosa DY-18] Length = 1003 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 77/464 (16%), Positives = 150/464 (32%), Gaps = 83/464 (17%) Query: 138 GSIDSPPYDCTRANHVQAWQLF---GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 S+ S P + ++++ + R + E +L + E L + + Sbjct: 535 PSLFSLPGEAEPVDNLRYFTQISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADM 594 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--------SSRQTYALRMYLF 246 G + L+ +L + + + E + G + + L+ LF Sbjct: 595 EQAGIAVSDALLTELHDTFSARANQAQESARAIIGGEVATEDGEEPLNLASVKQLQTVLF 654 Query: 247 LITGIDLVDMSEGTLKSILSHSN-----ITQLAKDLILNRLASSGSAILKL----NTLSE 297 G+ + + I+ + ++ +KL L + Sbjct: 655 ETLGLPHTRKIKSGYSTDAESVTELLSKISPESDGAAFLGALAAYRDNIKLAQTVEGLQK 714 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 A + DGR+ T Q GA+ TGR S QN+P + Sbjct: 715 AATEDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRT----------------------- 750 Query: 358 GLASDCVRSCIIAS-------NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R I + + L+ AD + IE R++ +A ++ I A+ GED++ Sbjct: 751 -EEGRRIRGAFIVAPEPIDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLHR 809 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 ++ F + V+ EQR+ K M L Y G AK + G + + Sbjct: 810 YVGSEVFGVAPEDVTPEQRSKVKAMSYGLAYGLSRFGLAKQLNISSDEAGELRTNYFKRF 869 Query: 467 KSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACEL 505 F ++H ++ A+ + GTA ++ Sbjct: 870 GRVGRFLRGVLKQAHQDGYTETIFGRRRVLPDLDSPNRVRREAAERAALNAPIQGTAADI 929 Query: 506 VKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRV 543 +K A H+ + ++ + + V G +A RV Sbjct: 930 IKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERV 973 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGT-LCSLMT 652 +Q + DI+ M + + G + VHDEI+ E + L M+ Sbjct: 922 IQGTAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERVLVEEMS 979 >gi|183601492|ref|ZP_02962862.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219683966|ref|YP_002470349.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|241191008|ref|YP_002968402.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196414|ref|YP_002969969.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219098|gb|EDT89739.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis HN019] gi|219621616|gb|ACL29773.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis AD011] gi|240249400|gb|ACS46340.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250968|gb|ACS47907.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793997|gb|ADG33532.1| DNA polymerase I [Bifidobacterium animalis subsp. lactis V9] Length = 960 Score = 203 bits (517), Expect = 6e-50, Method: Composition-based stats. Identities = 68/377 (18%), Positives = 132/377 (35%), Gaps = 63/377 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E + + G +D + +L E+ E ++++ + + + + Sbjct: 550 LRDIELPTSVALFHMEHTGASVDRARLDELLEMFTDESNRMEQICYEAAGHEV-NLQSPK 608 Query: 240 ALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILNRL--ASSGSAILKL- 292 L + LF G++ ++ T L+ T L + KL Sbjct: 609 QLGVVLFEEMGLNPTKKTKRGSYSTNAKALTTLYATSEEGSRPNEFLGALLRHREVNKLR 668 Query: 293 ---NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 TL +A++ DGR+ T A+ TGR S QN+P + Sbjct: 669 QIVQTLIDAINPRDGRIHTTFTQTVAA-TGRLSSVDPNLQNIPNR--------------- 712 Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +RS + G L+ AD + +E R++A ++G++ IKAF +G D Sbjct: 713 ---------NATGRDIRSAFVPGEGFADLLSADYSQVELRIMADLSGDEALIKAFKSGAD 763 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+D+V+ +QR K M L Y G ++ + ++ Sbjct: 764 FHRYVASMVYGIPVDEVTPDQRNHVKAMSYGLAYGLSTYGLSQQLGIPSKEAAALRSRYF 823 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 Q + + + S + +D A+ + GTA Sbjct: 824 QTFGKVHDYLESLVSNARNTGYTQTMFGRRRYFPALTSANRVARDAAERGALNAPIQGTA 883 Query: 503 CELVKKAWRAKHQGVLQ 519 +++K A + + Sbjct: 884 ADIMKIAMIRVDRALRD 900 Score = 47.8 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + IVL +HDE+V E V L Sbjct: 879 IQGTAADIMKIAMIRVDRALRDGNLNSRIVLQIHDELVVELAPGEEKRVTELVR 932 >gi|325963164|ref|YP_004241070.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] gi|323469251|gb|ADX72936.1| DNA polymerase I [Arthrobacter phenanthrenivorans Sphe3] Length = 952 Score = 203 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 83/516 (16%), Positives = 171/516 (33%), Gaps = 77/516 (14%) Query: 37 WDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWIC 95 D D Q A ++L LRD V H K + + + Sbjct: 411 VRDGAAAYIDLAGQDAESENVLAGWLRDPESPKVLHGFK---AALKALTSRGLELEGVVD 467 Query: 96 TSVLARTNGLP-------SSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT 148 + ++ P + L L + + K + L F D Sbjct: 468 DTSISGYLIQPDRRTYELAELAQHHLNVGIPQATAKAGQ---LELSFDGE-------DEA 517 Query: 149 RANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLK 208 A+ + + R E + + LS E + + + G ID+ + Sbjct: 518 AADALVQSAAVVQALSRYFEGELKERRAEELLSTLELPVSRVLADMELAGIGIDMARMDD 577 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--TLKSILS 266 +A+ + E + + L+ LF + + T + Sbjct: 578 QLADLARVIDQAQEQAFAAIGHEV-NLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASL 636 Query: 267 HSNITQLAKDLILNRLASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + + + + ++ +A +A L+ L +L ++V+ DGR+ T A+ TGR S Sbjct: 637 KNLLEKTGHEFLVQLMAHREAAKLRQMLESLKKSVAEDGRIHTTYAQNVAA-TGRISSNN 695 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAG 383 QN+P + VR + G + L+ AD + Sbjct: 696 PNLQNIPIRS------------------------EEGRRVRGIFVVGEGYECLLSADYSQ 731 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE R++A ++G+ I+A+ +GED++ + F+ P ++V+ R+ K M L Y Sbjct: 732 IEMRIMAHLSGDQGLIQAYKDGEDLHRFVGSNIFHVPAEEVTSAMRSKVKAMSYGLAYGL 791 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH------------------ 481 G +K + ++++ + + ++ Sbjct: 792 TSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGVVDQARVDGYTATIEGRRRYLPDL 851 Query: 482 ---HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 +++ A+ + G+A +++K+A H Sbjct: 852 TSTDRQLRENAERIALNSPIQGSAADIIKRAMLGVH 887 Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 50/282 (17%), Positives = 90/282 (31%), Gaps = 39/282 (13%) Query: 396 DWKIKAFANGEDIYVTTYAKAF-------------NTPIDKVSKEQRAIGKVMELALGYQ 442 + K+ A I+ T N PI S+E R + + + GY+ Sbjct: 665 ESLKKSVAEDGRIHTTYAQNVAATGRISSNNPNLQNIPIR--SEEGRRVRGIFVVGEGYE 722 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + ++++ + + ++ E H + V + Sbjct: 723 CLLSADYS-----QIEMRIMAHLSGDQGLIQAYKDGEDLHRF---------VGSNIFHVP 768 Query: 503 CELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 E V A R+K + + L LT E AR + + + V Sbjct: 769 AEEVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKEYFDRFGAVRDYLRGV 828 Query: 562 LPSSRRLVY-SDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATK 619 + +R Y + ++G YL TS + R ++ N +Q + DI+ M Sbjct: 829 VDQARVDGYTATIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADIIKRAMLGVHA 888 Query: 620 N------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 ++L VHDE+V E +V L M Sbjct: 889 ELKAQGLASRMLLQVHDELVLEVAPGERGAVEKLVTDQMAAA 930 >gi|255003568|ref|ZP_05278532.1| DNA polymerase I [Anaplasma marginale str. Puerto Rico] gi|255004694|ref|ZP_05279495.1| DNA polymerase I [Anaplasma marginale str. Virginia] Length = 853 Score = 203 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 133/390 (34%), Gaps = 65/390 (16%) Query: 173 LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L RL + ER L + + + G +D +++ +L + + L+++I L Sbjct: 442 LLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCK 501 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASS 285 + L LF G+ + + +T+LA D +L S Sbjct: 502 F-NVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFS 560 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V + + T ++ TGR S QN+P + + Sbjct: 561 KLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSK---------- 610 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G KLV AD + +E +++A IAG AF+ G Sbjct: 611 --------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEG 656 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 +DI++ T + F + E R K + + Y AK + Q Sbjct: 657 KDIHMVTAQQIFGDGVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQ 714 Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500 + ++ + + +A + ++ A+ + G Sbjct: 715 YFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQG 774 Query: 501 TACELVKKAWRAKHQG------VLQLWKDL 524 TA ++VKKA +LQ+ +L Sbjct: 775 TAADVVKKAMINLRNKLEVGAIILQVHDEL 804 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612 K + + +R+ Y+ G Y++ S+ R + + N +Q + D++ + Sbjct: 723 KNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 782 Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 M N I+L VHDE++ E P++ V + LM Sbjct: 783 AMINLRNKLEVGAIILQVHDELLVEVPESH---VDRVAKLM 820 >gi|56417214|ref|YP_154288.1| DNA polymerase I [Anaplasma marginale str. St. Maries] gi|56388446|gb|AAV87033.1| DNA polymerase [Anaplasma marginale str. St. Maries] Length = 864 Score = 203 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 133/390 (34%), Gaps = 65/390 (16%) Query: 173 LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L RL + ER L + + + G +D +++ +L + + L+++I L Sbjct: 453 LLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCT 512 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASS 285 + L LF G+ + + +T+LA D +L S Sbjct: 513 F-NVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFS 571 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V + + T ++ TGR S QN+P + + Sbjct: 572 KLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSK---------- 621 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G KLV AD + +E +++A IAG AF+ G Sbjct: 622 --------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEG 667 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 +DI++ T + F + E R K + + Y AK + Q Sbjct: 668 KDIHMVTAQQIFGDGVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQ 725 Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500 + ++ + + +A + ++ A+ + G Sbjct: 726 YFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQG 785 Query: 501 TACELVKKAWRAKHQG------VLQLWKDL 524 TA ++VKKA +LQ+ +L Sbjct: 786 TAADVVKKAMINLRNKLEVGAIILQVHDEL 815 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612 K + + +R+ Y+ G Y++ S+ R + + N +Q + D++ + Sbjct: 734 KNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 793 Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 M N I+L VHDE++ E P++ V + LM Sbjct: 794 AMINLRNKLEVGAIILQVHDELLVEVPESH---VDRVAKLM 831 >gi|313905679|ref|ZP_07839040.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] gi|313469503|gb|EFR64844.1| conserved hypothetical protein [Eubacterium cellulosolvens 6] Length = 180 Score = 203 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 19/189 (10%) Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 L + + +WR + + W D+ + + R + Sbjct: 1 MGLSEEELQPLVNSWRNSNPMITAFWWDIDRAVKTTITQRIQTEVRGI------CFFYKS 54 Query: 556 RDVHIVLPSSRRLVYSDVK-GDCSYLN--------TATSQLMRERTYGGKLTENIVQAIS 606 + I LPS R L Y + G+ Y +T + R +YG K ENIVQA+S Sbjct: 55 GMLFIKLPSGRLLSYVKPRIGENQYGGESVTYEGVGSTKKWERIESYGPKFVENIVQAVS 114 Query: 607 RDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKNPSWAKGLPLKAE 666 RDILC MK T IV VHDE++ E +V +C M ++P W + L+A+ Sbjct: 115 RDILCYAMK--TLRHCFIVGHVHDELIIECSPDVDTNV--ICKQMGRSPDWMPDILLRAD 170 Query: 667 GYEAKRYRK 675 GYE Y+K Sbjct: 171 GYETNFYKK 179 >gi|222475578|ref|YP_002563995.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] gi|222419716|gb|ACM49739.1| DNA polymerase I (polA) [Anaplasma marginale str. Florida] Length = 864 Score = 203 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 133/390 (34%), Gaps = 65/390 (16%) Query: 173 LFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI 231 L RL + ER L + + + G +D +++ +L + + L+++I L Sbjct: 453 LLDRLFTVYYQLERPLVRVLYEMQEIGVEVDTEILKQLSQDFHGSIRSLEKEIYDLAGCK 512 Query: 232 IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK------DLILNRLASS 285 + L LF G+ + + +T+LA D +L S Sbjct: 513 F-NVASARQLGKLLFERMGLSSSAKKMPSGSYSTNAEVLTELAAEGVEIADKVLKWRHFS 571 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 ++ L V + + T ++ TGR S QN+P + + Sbjct: 572 KLKSTYVDALLRQVETGTKRVHTSYSMISTATGRISSSNPNLQNIPIRSK---------- 621 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R +A G KLV AD + +E +++A IAG AF+ G Sbjct: 622 --------------EGTEIRKAFVAREGHKLVSADYSQMELKIMAHIAGVQAFRDAFSEG 667 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQ 461 +DI++ T + F + E R K + + Y AK + Q Sbjct: 668 KDIHMVTAQQIFGDGVTD--PELRRRAKSINFGIIYGMSPFGLAKNVGITRQEASQYVAQ 725 Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500 + ++ + + +A + ++ A+ + G Sbjct: 726 YFRSYPEIKNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQG 785 Query: 501 TACELVKKAWRAKHQG------VLQLWKDL 524 TA ++VKKA +LQ+ +L Sbjct: 786 TAADVVKKAMINLRNKLEVGAIILQVHDEL 815 Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 7/101 (6%) Query: 555 KRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCE 612 K + + +R+ Y+ G Y++ S+ R + + N +Q + D++ + Sbjct: 734 KNYMEAIKAYARKYGYTRTAFGRKCYISGINSEQHTVRGFAERAAINAPIQGTAADVVKK 793 Query: 613 GMKNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 M N I+L VHDE++ E P++ V + LM Sbjct: 794 AMINLRNKLEVGAIILQVHDELLVEVPESH---VDRVAKLM 831 >gi|203287988|ref|YP_002223003.1| DNA polymerase I [Borrelia recurrentis A1] gi|201085208|gb|ACH94782.1| DNA polymerase I [Borrelia recurrentis A1] Length = 922 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 76/493 (15%), Positives = 155/493 (31%), Gaps = 87/493 (17%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL--PSSLKNACLALNF 118 L + + N F+ + K+ G ++ S + T + A SL A Sbjct: 409 LFNSQPKLIGQNYKFDYKVLKRH-GFNVISA-YFDTMIAAYVIDPNTKVSLDFLA-AKYL 465 Query: 119 SEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI 178 K EE P T + ++ Y D + T LF L Sbjct: 466 MHKNIKYEEI--------------VPQHSTLKDIPL--EIASNYAAEDADITFRLFNILR 509 Query: 179 P----------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 + + E + I + G +D + + + + QE K ++ ++++ Sbjct: 510 KKLKEDNLESLMKNIEMPFSNVIIEIEENGIYLDSNYLTQYGHELEQELKTIENEVIQSI 569 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVD--MSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + + L LF I + + T +L + + ++N + Sbjct: 570 GIEF-NLNSSKQLHTILFEKLNIIVSKNVKQDSTDIKVLETIKDQHESIEKLINYRQLAK 628 Query: 287 SAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLP-RQERSEEILTQTI 344 + L E ++ ++ + TGR S QN+P + ER Sbjct: 629 LKNTYTDNLIEFINEKTNKIHTNF-MQTKTATGRISSTAPNLQNIPIKNER--------- 678 Query: 345 QALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R+ + G + AD + IE +LA ++ ++ I+AF + Sbjct: 679 ----------------GRKIRAAFKPTKGNIFISADYSQIELVILAHLSEDESLIEAFTH 722 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQ 460 +DI++ T +K F ++ R I K + + Y+ A + + Sbjct: 723 KKDIHIQTASKLFKVDEANITPSMRRIAKSINFGIIYRMSAFRLSQELSIKRDEAQNFID 782 Query: 461 QFSQNVKSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLI 499 + TF + S + + A+ + Sbjct: 783 SYFNLYSKIKTFIQNQIDFVKQNGYSETLLKRRRYIREINSQNYLERTGAERMAINSIIQ 842 Query: 500 GTACELVKKAWRA 512 G+A +++K A Sbjct: 843 GSASDIMKIAMIK 855 Score = 44.7 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 +I+Q + DI+ M I+L VHDE++ E+P+ + M Sbjct: 837 INSIIQGSASDIMKIAMIKVYNEFKNNNLKSKILLQVHDEMLIESPEEECEKAQIIIKEM 896 Query: 652 TKN 654 +N Sbjct: 897 MEN 899 >gi|42520815|ref|NP_966730.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410555|gb|AAS14664.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila melanogaster] Length = 858 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 88/517 (17%), Positives = 174/517 (33%), Gaps = 99/517 (19%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + + + +L L V+ + HN R +F + + S + + G Sbjct: 342 DSIQDALIIINLT--LLSNGVLKIIHNIKEIRKIFP-AIEKMLDSVDDLMIMSYSLDTGK 398 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A N SE+ ++ K LIA + +LF Sbjct: 399 HDHSIPNIVAHNLSEN-AEIFSAKTLIA----------------IHEKLKQRLFQ----- 436 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E +++R ++ L + + G +++ + +L + Q L+++I Sbjct: 437 --EKLLTIYERF------DKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIY 488 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LIL 279 L + L LF G++ S+ + ++ + L ++ IL Sbjct: 489 NLAGERFNIA-SPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKIL 547 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N S + L + V DGR+ + + GR S QN+P + Sbjct: 548 NWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATAT-GRLSSSNPNLQNIPIRS---- 602 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + +R IA G K++ AD + IE R+LA +A Sbjct: 603 --------------------EEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 642 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AFANG+DI+ T + F ++ ++ R K + + Y G AK + Sbjct: 643 KEAFANGQDIHEITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493 + + + + + + +++ A Sbjct: 701 AAEYINYYFSCYPEIKAYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYIRQFAERAA 760 Query: 494 VKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524 + L GTA +++K+A + +LQ+ +L Sbjct: 761 INAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDEL 797 Score = 41.3 bits (95), Expect = 0.61, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%) Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLMTKNPS 656 Q + DI+ I+L VHDE++ E D + + +M Sbjct: 766 QGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEKVQETAKLIKDIMENAIE 822 >gi|314929350|gb|EFS93181.1| DNA-directed DNA polymerase [Propionibacterium acnes HL044PA1] Length = 892 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 66/407 (16%), Positives = 128/407 (31%), Gaps = 74/407 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E + ++ G +D D++ L+ + + + I S Sbjct: 489 LHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAWEAAGEKINLS-SPK 547 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L+ LF + ++ H + L + +L + Sbjct: 548 QLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLEHRDAIKLRQT---- 603 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + + DGR+ T A+ TGR S QN+P + Sbjct: 604 --VDGLLKEIRDDGRVHTTYMQTIAA-TGRLSSKDPNLQNIPMRT--------------- 645 Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G + L+ AD + IE R++A ++G+ I AF +G+D Sbjct: 646 ---------EEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDF 696 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T + F + VS QR+ K M L Y G + K + + Sbjct: 697 HTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFS 756 Query: 465 NVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTAC 503 + + ++ +D A+ + G+A Sbjct: 757 RFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAA 816 Query: 504 ELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVA 544 +L+K A A Q ++ + + V + R++ Sbjct: 817 DLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 863 Score = 41.3 bits (95), Expect = 0.50, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + + G ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 863 >gi|313837440|gb|EFS75154.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA2] gi|314971647|gb|EFT15745.1| DNA-directed DNA polymerase [Propionibacterium acnes HL037PA3] Length = 883 Score = 203 bits (516), Expect = 9e-50, Method: Composition-based stats. Identities = 66/407 (16%), Positives = 128/407 (31%), Gaps = 74/407 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E + ++ G +D D++ L+ + + + I S Sbjct: 480 LHDVEMGVQRCLISMERVGIAVDTDILEGLRSEFDERVTRAQGAAWEAAGEKINLS-SPK 538 Query: 240 ALRMYLFLITGIDLVDMSEGTLK----------SILSHSNITQLAKDLILNRLASSGSAI 289 L+ LF + ++ H + L + +L + Sbjct: 539 QLQGVLFEKLDMPKTRRTKSGYTTDADALAGLYEKTEHPFLAHLLEHRDAIKLRQT---- 594 Query: 290 LKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 ++ L + + DGR+ T A+ TGR S QN+P + Sbjct: 595 --VDGLLKEIRDDGRVHTTYMQTIAA-TGRLSSKDPNLQNIPMRT--------------- 636 Query: 350 GETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R + G + L+ AD + IE R++A ++G+ I AF +G+D Sbjct: 637 ---------EEGRRIREGFVVGEGYESLLSADYSQIEMRIMAHVSGDQSLIDAFRSGQDF 687 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T + F + VS QR+ K M L Y G + K + + Sbjct: 688 HTVTASHVFGVAPEDVSVAQRSKIKAMNYGLAYGLSAYGLSNQLKVSVGEAKELMAGYFS 747 Query: 465 NVKSTSTFEDWEQAESHHL---------------------WMQDQYPEFAVKDKLIGTAC 503 + + ++ +D A+ + G+A Sbjct: 748 RFGKVHEYLEEVVDQARRQGYTETLLGRRRYLPDLTSTNRQRRDMAERAALNAPIQGSAA 807 Query: 504 ELVKKAWRAKHQG------VLQLWKDLTEGFACVVQEGGSISARRVA 544 +L+K A A Q ++ + + V + R++ Sbjct: 808 DLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 854 Score = 41.3 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGM----KNATKNGY--DIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + + G ++L VHDE++ E V + Sbjct: 802 IQGSAADLIKLAMVATDQKLAEAGLTSRVLLQVHDELILEVTKDEEEKVRQIV 854 >gi|309807121|ref|ZP_07701098.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] gi|308166472|gb|EFO68674.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 03V1-b] Length = 512 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 58/396 (14%), Positives = 127/396 (32%), Gaps = 68/396 (17%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 100 ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG 159 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285 + L + LF + ++ ++ + + + D++ R S Sbjct: 160 EKF-NINSPKQLGVILFEKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISK 218 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + +N L + + +DG++ + TGR S QN+P Sbjct: 219 IQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP-------------- 262 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + L D + +E RVLA ++ E ++AF Sbjct: 263 ----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKE 312 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T K F +D+V+ R K + + Y G AK + Sbjct: 313 GYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFI 372 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + + + + + ++ A+ + Sbjct: 373 NNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPI 432 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDL 524 G+A +++K A K + +LQ+ +L Sbjct: 433 QGSAADIIKIAMIKMQSELERRKLKTKMILQIHDEL 468 >gi|289522409|ref|ZP_06439263.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504245|gb|EFD25409.1| DNA polymerase I [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 856 Score = 203 bits (515), Expect = 1e-49, Method: Composition-based stats. Identities = 75/496 (15%), Positives = 155/496 (31%), Gaps = 80/496 (16%) Query: 110 KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA 169 + +EG A I + K + + + L+G+ EA Sbjct: 393 DGKIAYYLLHPDKSSSKEGLAEIKKMLKSE------EGLDKEALSLFDLYGKISSEMDEA 446 Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 L R+ + L ++ + +G R+DLD + K+++ + + + I Sbjct: 447 LHGLMYRI------DIPLSVVLSRMERKGIRLDLDHLWKVKQELERTLDDVKASIDMAAG 500 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEGT-------LKSILSHSNITQLAKDLILNRL 282 + + + LF G+ ++ ++ L+ + L L+L+ Sbjct: 501 YKV-NLNSPKQVGWLLFDHLGLPVIKKTKTGYSTDVTVLEELSRLDRPEALVAKLLLDHR 559 Query: 283 ASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + + L +A+ G++ T + + ++ TGR S QNLP Sbjct: 560 ELTKMLTGFVQPLIDAIDPKTGKVHTTFE-HTSTGTGRLSSRDPNLQNLP---------- 608 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 G + ++ + + AD + IE RVLA I+G+ + Sbjct: 609 --------------AYGDWAMKLKEAFVPDRRDGIFIAADYSQIELRVLAHISGDKKLCE 654 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 AF G DI+ T A F +KVS E R + K++ L Y G A Sbjct: 655 AFERGRDIHAETAAWIFGVDTEKVSPELRRMAKMINFGLLYGMTPYGLASRLNIGREEAK 714 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVK 495 + ++ + + E+ A+ Sbjct: 715 TIIDRYFSAFPKVGDYIEKSYEEARKRGYTLSLFGRRRPLNEVTTVVGNSTAALKRVAIN 774 Query: 496 DKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHK 555 + TA ++ K A + + + +++ + + + Sbjct: 775 TPIQSTAADITKIAMIRLDEALQR--ENIDAALILQIHDSL------ICECSAKDEEVVS 826 Query: 556 RDVHIVLPSSRRLVYS 571 + + S+ L Sbjct: 827 GILKESMESAVELSVP 842 >gi|304360711|ref|YP_003856842.1| putative DNA polymerase [Clostridium phage phiCTP1] gi|302495570|gb|ADL40350.1| putative DNA polymerase [Clostridium phage phiCTP1] Length = 765 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 116/708 (16%), Positives = 223/708 (31%), Gaps = 118/708 (16%) Query: 6 IDIETRS----PQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMP-SDLLQY 60 +D ET + V ++ E+ + + KL D +P + +Y Sbjct: 81 LDTETTGLNVVDDKIAGVNLYTPGEKGIYVPLNHVSYMTGAKLKD-----QLPLDVVKKY 135 Query: 61 LRDETVMCVAH-NSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 + + N+ F+ + +GI+ W + LA + + L + Sbjct: 136 IMQLENTKLDFSNAHFDLQVLYWQMGINNIKAYW--DTQLAANLLNEN--EPHGLKYLYE 191 Query: 120 EHLTKMEEGKALIARFCK----GSIDSPP---------YDCTRANHVQAWQLFGEYCKRD 166 +++ K + +A F P D + + +Q Sbjct: 192 KYVKKEDTNSKQLATFGTLFRGIPFTKIPLDIAYLYAGKDPKMSYELAEFQRKYLNNTDA 251 Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV- 225 R L + D E + +G ++DLDL KL Q++ +++E + Sbjct: 252 DVVKRHLDDVYRVMIDIEMPTVPAVLDMEIKGIKLDLDLNKKLSAKYRQKKAEVEEKLKI 311 Query: 226 -------KLTDGIIRSS------------RQTYALRMYLFLITGIDLVDMSE--GTLKSI 264 + + I+ L ++ + + G+ VD + GT I Sbjct: 312 EFNKYDKEFKEFKIKHPDLASRLSNPINISSPKQLGIFFYDMLGLKPVDREKPRGTGADI 371 Query: 265 LSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGC 323 L ++ LIL ++ L +S G++ T YG + TGR+S Sbjct: 372 LGKFDVP--VAKLILEYRELDKLLGTYIDKLPTVLSKRTGKIHCTFNQYG-TVTGRFSSD 428 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAG 383 QN+P + +R I +G L+ D + Sbjct: 429 SPNLQNIPSHNKD---------------------------IRKMFIPDDGNILIGGDYSQ 461 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK------------VSKEQRAI 431 E R LA ++G++ IKA+ NG+DIY T + + P ++ + K++R+ Sbjct: 462 QEPRSLAHMSGDEKMIKAYKNGKDIYATIASYVYKVPYEECLEFNPDGTTNTIGKQRRSN 521 Query: 432 GKVMELALGYQGGAKVF----KTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQD 487 K + L + Y G + +F F + + L Sbjct: 522 LKGVVLGIIYGRGVNSIAEKLNLTKKEAQSIIDEFFTLFPKVKQFTEDSIRMARELGYVT 581 Query: 488 QYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVP 547 + I K ++ + + V E +S + Sbjct: 582 TLSGRRRRLPDINLPRYEFKYKDKSTSDNFNPFFDTADDVENDEVPEYVQLSYTAMLEKS 641 Query: 548 RLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISR 607 R +R + S R +K + + A Q + +Q + Sbjct: 642 RFDKKRKNVIL-----SKARTEGISIKNNTGLIAQAERQ----------CVNSRIQGSAA 686 Query: 608 DILCEGM------KNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 D+ M K + GY +++ VHDEI+ + P V + Sbjct: 687 DMTKIAMIALHNNKRLKELGYCMLIQVHDEIIGQCPIDVVKEVKPILE 734 >gi|256825133|ref|YP_003149093.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] gi|256688526|gb|ACV06328.1| DNA polymerase I [Kytococcus sedentarius DSM 20547] Length = 904 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 72/394 (18%), Positives = 135/394 (34%), Gaps = 82/394 (20%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 D E L + G +D D + L+ A + + D D + L Sbjct: 497 DLELPLARHLVAMEATGIAVDTDRLDALEGEFADQVAQATADAHAAIDDPGVNLGSPKQL 556 Query: 242 RMYLFLITGIDLVD---------------MSEGTLKSILSHSNITQLAKDLILNRLASSG 286 + LF G+ + + + + + L + + RL S+ Sbjct: 557 QEVLFERLGLPKTKKTKTGYTTDADALVWLRAQASEGSTAETFLEALLRHRDVTRLRST- 615 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + L +AV +DGR+ T Q A+ TGR S QN+P + + Sbjct: 616 -----VQGLQKAVDADGRIHTTYQQTIAA-TGRLSSVDPNLQNIPIRTEA---------- 659 Query: 347 LNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANG 405 +R + +G L+ AD + IE R++A ++G++ I+AF G Sbjct: 660 --------------GRRIREVFVVGSGFDHLMSADYSQIEMRIMAHLSGDEGLIEAFRAG 705 Query: 406 EDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQ 461 ED++ +K F ++V+ E RA K M L Y G +K + + + Sbjct: 706 EDLHRYVGSKVFQVAPEEVTAEMRAKVKAMSYGLAYGLSSFGLSKQLGITPAEASALMDE 765 Query: 462 FSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIG 500 + + E+ + ++ A+ + G Sbjct: 766 YFARFGGVRDYLRAVVDEARRTGYTETMLGRRRPLPDLASTNRQRREMAERMALNAPIQG 825 Query: 501 TACELVKKAW----------RAKHQGVLQLWKDL 524 +A +++K A R + +LQ+ +L Sbjct: 826 SAADVMKLAMLKVEDALDAQRLASRVLLQVHDEL 859 >gi|163782924|ref|ZP_02177919.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] gi|159881604|gb|EDP75113.1| DNA polymerase I (PolI) [Hydrogenivirga sp. 128-5-R1-1] Length = 576 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 100/539 (18%), Positives = 179/539 (33%), Gaps = 91/539 (16%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRD 63 LFID ET + I L D+E + + D + L + + Sbjct: 25 LFIDTETTGDR---------------IRLFQVG-DEERIFVIDLFDLPEAVDVLKELIAK 68 Query: 64 ETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLT 123 + V V HN F+ K + I T + + G + + Sbjct: 69 KGV--VGHNLKFD---LKFMYPLGIVPYATFDTMIGSFLLGYERHSLSHVAERLLGYTMD 123 Query: 124 KMEEGKALIAR-FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEA--------TRELF 174 K + K I+ D + + + T +F Sbjct: 124 KSLQLSDWSRTALTKQQIEYAATDVLVVRELFYKMREKLNALGETDRGEELLRTRTARVF 183 Query: 175 KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRS 234 P + E + G +D + + +L ++ +KL D Sbjct: 184 GLTNPATVVEMAFVQEIARLEMNGIPVDEEEIERLSREYEKKLQKLIMDFYIKYRID--- 240 Query: 235 SRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSGSAILK 291 + +L G++L + +G T L+ + + +D++ R A+ K Sbjct: 241 PMSPKQIGSFLTGRLGLELPETQKGNISTDDKTLAEFSHVKEVRDILEIRRI--KKALDK 298 Query: 292 LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGE 351 L L + +GR+ + GA TGR S QN+PR Sbjct: 299 LKELKGFI-RNGRVYPEFRQIGAV-TGRMSSSNPNVQNIPRD------------------ 338 Query: 352 TIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVT 411 +RS AS G V+AD + IE R+ A ++ ++AF G D++ Sbjct: 339 ------------MRSLFRASEGNLFVIADFSQIELRIAAEYVQDENMLRAFREGRDLHRY 386 Query: 412 TYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMA-SHCGLDLQQFSQNVKSTS 470 T + P ++++KE+R + K M L Y A+ A S G++L+ + +V Sbjct: 387 TASLVLEKPEEEITKEERQLAKAMNFGLIYGISARGLSEYARSSYGVELEIEAADVFRQK 446 Query: 471 TFEDWEQAESHHLWMQDQYPEF--------------------AVKDKLIGTACELVKKA 509 F+ + + H ++ + E AV + GT +L+K A Sbjct: 447 FFKFFHAFKDWHDSVKRELKENKEVVGTTLLGRPYRASTFTDAVNYPIQGTGADLLKLA 505 >gi|145640968|ref|ZP_01796550.1| DNA polymerase I [Haemophilus influenzae R3021] gi|145274482|gb|EDK14346.1| DNA polymerase I [Haemophilus influenzae 22.4-21] Length = 314 Score = 202 bits (514), Expect = 1e-49, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 119/313 (38%), Gaps = 62/313 (19%) Query: 261 LKSILSHSNITQ-LAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTG 318 ++ + + + L + L++L S+ + + L + V+S GR+ + + TG Sbjct: 1 MEELSYSHELPKILVEHRGLSKLKSTYT-----DKLPQMVNSQTGRVHTSY-HQAVTATG 54 Query: 319 RWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVV 378 R S QN+P + +R IA G +V Sbjct: 55 RLSSSDPNLQNIPIR------------------------NEEGRRIRQAFIAREGYSIVA 90 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++G+ I AF+ G+DI+ +T A+ F +D+V+ EQR K + Sbjct: 91 ADYSQIELRIMAHLSGDQGLINAFSQGKDIHRSTAAEIFGVSLDEVTSEQRRNAKAINFG 150 Query: 439 LGYQGG--------------AKVFKTMASHCGLDLQQFSQNVKSTSTFEDW--------- 475 L Y A+ + + +QQF ++++ + + + Sbjct: 151 LIYGMSAFGLSRQLGISRPDAQKYMDLYFQRYPSVQQFMTDIRAKAKAQGYVETLFGRRL 210 Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL-----QLWKDLTEGF 528 S + + A+ + GTA +++K+A + + ++ + + Sbjct: 211 YLPDINSSNAMRRKGAERVAINAPMQGTAADIIKRAMIKIDEVIRHDPDIEMIMQVHDEL 270 Query: 529 ACVVQEGGSISAR 541 V+ R Sbjct: 271 VFEVRSEKVAFFR 283 >gi|269956308|ref|YP_003326097.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] gi|269304989|gb|ACZ30539.1| DNA polymerase I [Xylanimonas cellulosilytica DSM 15894] Length = 905 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 94/580 (16%), Positives = 174/580 (30%), Gaps = 99/580 (17%) Query: 14 QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQY-LRDETVMCVAHN 72 + G A + I L A +D + + L L D T V H Sbjct: 345 VDVAGRGTPAQGDAWGIALAA----GGQGVAYDLADITPDDEQALATWLADPTAPKVLHG 400 Query: 73 SLFERILFK-KTLGIDIPSKRWICTSVLARTNGLPS----SLKNACLALNFSEHLTKMEE 127 + + +G+D + + LA P L + E ++ Sbjct: 401 AKTAWHALAARGIGLD----GVVFDTELAAYLCYPDQRGYDLGDLVARHLGRELKVGDDD 456 Query: 128 GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDL 187 + + G+ + TRA V D L L+D E L Sbjct: 457 AQGALDLDLGGAGTQGVREATRAAAVADLAQALAGQLDD-----RGAASL--LTDVELPL 509 Query: 188 WLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFL 247 + + G D + L+ A + + + + + L+ LF Sbjct: 510 SAVLARVEATGIATDTAYLTGLERGFADQVAQAAAEAYDAIGHEV-NLGSPKQLQEVLFG 568 Query: 248 ITGIDLVDM-------SEGTLKSILS---HSNITQLAKDLILNRLASSGSAILKLNTLSE 297 + L + + H + L +L + + L + Sbjct: 569 ELDMPKTKKTKTGYTTDAAALAELYAKTGHPFLEHLLAHRDAAKLRVT------VEGLLK 622 Query: 298 AVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPL 357 +V DGR+ T Q A+ TGR S QN+P + + Sbjct: 623 SVHPDGRIHTTFQQTIAA-TGRLSSTEPNLQNIPIRTEA--------------------- 660 Query: 358 GLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 +R G + L+ AD + IE R++A ++G++ I+AF GED++ ++ Sbjct: 661 ---GRQIRRAFRVGEGFESLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHRYVGSRV 717 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 F V+ E R+ K M L Y G ++ + + + Sbjct: 718 FGVEPAGVTAEMRSKVKAMSYGLAYGLSAFGLSQQLGIATGEAQGLMDDYFARFGGVREY 777 Query: 473 EDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWR 511 D E+ + + A+ + G+A +++K A Sbjct: 778 LDGVVEEARATGYTATVLGRRRYLPDLTSDNRQRRQMAERMALNAPIQGSAADIIKLAML 837 Query: 512 A----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 + + +LQ+ +L A +E R Sbjct: 838 GVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLR 877 Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMK----NATKNGYD--IVLTVHDEIVSET-PDTPYFSVGTLCSLMTKN 654 +Q + DI+ M G ++L VHDE+V E P + L + M Sbjct: 824 IQGSAADIIKLAMLGVQRELDARGLRSRLLLQVHDELVVEVAPGEREAAEDVLRTQMGAA 883 >gi|308177719|ref|YP_003917125.1| DNA polymerase I [Arthrobacter arilaitensis Re117] gi|307745182|emb|CBT76154.1| DNA polymerase I [Arthrobacter arilaitensis Re117] Length = 870 Score = 202 bits (514), Expect = 2e-49, Method: Composition-based stats. Identities = 79/527 (14%), Positives = 172/527 (32%), Gaps = 81/527 (15%) Query: 50 QSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSS- 108 A + L Q+L D + H++ L + ++++ P Sbjct: 346 DEAAENVLAQFLADAAAPKIFHDAKATMHLLAD---RGLKLAGIHDDTLISAYLIQPDRR 402 Query: 109 ----LKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCK 164 + L ++ + + ++G+ + + P +A H + L + + Sbjct: 403 SHDLVDVVQYHLKYAVPVHQAKKGELDLGL--TADLAEPALAQAQAIHDLSAFLATKLAE 460 Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 + + + E L + + G +D+D + +L+ ++ + D Sbjct: 461 KHADKLAA---------EMELPLIPVLFEMERAGVAVDVDRLNELRAHFTEQVDQATNDA 511 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLAS 284 + S L++ LF + + + + Sbjct: 512 FAAIGHEVNLS-SPKQLQVVLFEELDLPRTKKIKTGFTTDAESLADLLVKTGHPFLVALM 570 Query: 285 SGSAILKL----NTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 + +KL + L +A DGR+ T A+ TGR S QN+P + Sbjct: 571 AYRDAIKLRQTVDGLLKATHEDGRIHTTYAQTVAA-TGRLSSLNPNLQNIPVRS------ 623 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399 +R + G + L+ D + IE R++A ++ ++ I Sbjct: 624 ------------------EEGRRIRDVFMVGEGYQSLLTVDYSQIEMRIMAHLSEDEGLI 665 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +A+ NGED++ ++ FN ++V+ E R+ K M L Y G +K K Sbjct: 666 EAYQNGEDLHRYVGSRVFNVEPEEVTSEMRSKVKAMSYGLAYGLSSFGLSKQLKIGVDEA 725 Query: 456 GLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAV 494 ++ + + T+ + S ++D A+ Sbjct: 726 RKLMKDYFDRFGAVRTYLRSVVDQARKDGYTETIFGRRRYLPELNSSDRRLRDIAERAAL 785 Query: 495 KDKLIGTACELVKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535 + G+A +LVK A + + ++ + + + EG Sbjct: 786 NAPIQGSAADLVKVAMLRIDEELKAGEYKSRMLLQVHDELILEIAEG 832 Score = 46.3 bits (108), Expect = 0.015, Method: Composition-based stats. Identities = 53/282 (18%), Positives = 97/282 (34%), Gaps = 39/282 (13%) Query: 396 DWKIKAFANGEDIYVTTYAKAF-------------NTPIDKVSKEQRAIGKVMELALGYQ 442 D +KA I+ T N P+ S+E R I V + GYQ Sbjct: 583 DGLLKATHEDGRIHTTYAQTVAATGRLSSLNPNLQNIPVR--SEEGRRIRDVFMVGEGYQ 640 Query: 443 GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTA 502 V + ++++ + + E ++ E H + V ++ Sbjct: 641 SLLTVDYS-----QIEMRIMAHLSEDEGLIEAYQNGEDLHRY---------VGSRVFNVE 686 Query: 503 CELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIV 561 E V R+K + + L L+ + G AR++ + + V Sbjct: 687 PEEVTSEMRSKVKAMSYGLAYGLSSFGLSKQLKIGVDEARKLMKDYFDRFGAVRTYLRSV 746 Query: 562 LPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT- 618 + +R+ Y++ + G YL S R R + N +Q + D++ M Sbjct: 747 VDQARKDGYTETIFGRRRYLPELNSSDRRLRDIAERAALNAPIQGSAADLVKVAMLRIDE 806 Query: 619 --KNGY---DIVLTVHDEIVSETPDTPYFSVGTLCSL-MTKN 654 K G ++L VHDE++ E + V L + M + Sbjct: 807 ELKAGEYKSRMLLQVHDELILEIAEGELEPVQELVTREMGQA 848 >gi|309805236|ref|ZP_07699288.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c] gi|308165470|gb|EFO67701.1| DNA-directed DNA polymerase [Lactobacillus iners LactinV 09V1-c] Length = 439 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 58/415 (13%), Positives = 130/415 (31%), Gaps = 68/415 (16%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 + ++L + E + ++ + G ++ ++K++ + L I +L Sbjct: 27 ELQQHEQLHLYKNIEIPIAVILAKMEIAGIKVQATTLVKMKNDLDVRITDLKNKIYQLAG 86 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLILNRLASS 285 + L + LF + ++ ++ + + + D++ R S Sbjct: 87 EKF-NINSPKQLGVILFDKLKLTPAKKTKTGYSTSVDVLEKLEYQSPIVADILDYRQISK 145 Query: 286 GSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 + +N L + + +DG++ + TGR S QN+P Sbjct: 146 IQST-YINGLLDYIQADGKIHTRF-LQTLTTTGRLSSVEPNLQNIP-------------- 189 Query: 346 ALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R + L D + +E RVLA ++ E ++AF Sbjct: 190 ----------VKLEEGKQIRKAFVPCKQDSYLFSCDYSQVELRVLAHVSHEKNMLEAFKE 239 Query: 405 GEDIYVTTYAKAFNTP-IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDL 459 G DI+ T K F +D+V+ R K + + Y G AK + Sbjct: 240 GYDIHAHTAMKIFGLSNLDEVTPLMRRHAKAVNFGIVYGISDYGLAKNLGISRQEAQNFI 299 Query: 460 QQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKL 498 + + + + + ++ A+ + Sbjct: 300 NNYFEQYPQIKDYMKAAVKLAREKGYAETIMHRRRLLPDIHNKNFNIRSFAERTAINSPI 359 Query: 499 IGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARRV 543 G+A +++K A K + +LQ+ +L + ++ Sbjct: 360 QGSAADIIKIAMIKMQSELEQRKLKTKMILQIHDELLFDVPSEELDLIKTLVPKI 414 >gi|189485016|ref|YP_001955957.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286975|dbj|BAG13496.1| DNA polymerase I [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 908 Score = 201 bits (512), Expect = 2e-49, Method: Composition-based stats. Identities = 80/532 (15%), Positives = 171/532 (32%), Gaps = 94/532 (17%) Query: 46 DRTEQSAMPSDLLQYLR----DETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLAR 101 D T + + D + + + H+ ER ++ + G+ + + + + + Sbjct: 372 DLTARQVIFEDFKDIFAPLFFSDKIKKIGHDLKQERNIYSMS-GVGLNNI-YFDIMLASY 429 Query: 102 TNGLPSSL---KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHV--QAW 156 S + L+F+ + + + F SI++ + + Sbjct: 430 CLNPAKSHCITDMSKEYLDFTAGVGSYAWKGSKKSSFANSSIEAGAKYANSISAAVFAIY 489 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 ++F K ++L D E L + + G ++DL + E I E Sbjct: 490 KIFDFQIK-----EKKLSLLFF---DTEMSLVEILSEMEISGIKVDLPFLRNFNEKIVYE 541 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSN 269 K ++ +I K+ + L +F + ++ ++ L + SH Sbjct: 542 LKIIENNIYKIAGIEF-NINSQKQLSSVMFEKLNLPVIKKTKTGYSTDEEVLVELSSHEF 600 Query: 270 ITQLAKDLILNRLASSGSAILKLNTLSEAVSSDG-RLRGTLQFYGASRTGRWSGCVFQPQ 328 ++ K L +L S+ ++ L++ G R+ + TGR S Q Sbjct: 601 PAEILKYRELQKLKSTY-----IDPLTDYCVYYGSRIHTIFN-QAVTTTGRLSSTEPNLQ 654 Query: 329 NLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARV 388 N+P R + K + AD + I+ RV Sbjct: 655 NIP------------------------VKSAYGKEFRKAFVPERNKIFISADYSQIDLRV 690 Query: 389 LAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID-KVSKEQRAIGKVMELALGYQGGA-- 445 LA I+ + I+AF G DI+ T + FN P ++ R+ K + + Y Sbjct: 691 LAHISQDTKFIEAFKAGTDIHSATAREIFNIPEGYPLTDSLRSAAKSINFGIIYGMSPFG 750 Query: 446 --KVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482 K + + + + + + S + Sbjct: 751 LSKQLNIPFGKAKEYIDGYFERYDKVKFWMEQIVKQASEDGYVRTITGRIRYIPELRSTN 810 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV----------LQLWKDL 524 ++ A+ + G++ +++K A + + + LQ+ DL Sbjct: 811 AQVRKAGERMALNTPVQGSSADIIKIAMISVYNEIKLKGYKSLMLLQVHDDL 862 Score = 40.1 bits (92), Expect = 1.1, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 46/117 (39%), Gaps = 8/117 (6%) Query: 539 SARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKL 597 A+ + + K + ++ + Y + G Y+ S + R G ++ Sbjct: 761 KAKEYIDGYFERYDKVKFWMEQIVKQASEDGYVRTITGRIRYIPELRSTNAQVRKAGERM 820 Query: 598 TENI-VQAISRDILCEGMKN----ATKNGYDIVL--TVHDEIVSETPDTPYFSVGTL 647 N VQ S DI+ M + GY ++ VHD+++ E PD ++ ++ Sbjct: 821 ALNTPVQGSSADIIKIAMISVYNEIKLKGYKSLMLLQVHDDLLFEVPDGESENMISI 877 >gi|163841042|ref|YP_001625447.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] gi|162954518|gb|ABY24033.1| DNA polymerase I [Renibacterium salmoninarum ATCC 33209] Length = 912 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 63/396 (15%), Positives = 133/396 (33%), Gaps = 66/396 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+ E L + + G + + + L + + + + + + Sbjct: 505 LTGLELPLARVLSGMELAGVAVSKETLDTLMADFGKTIETAQTEAYAIIGHEV-NLGSPK 563 Query: 240 ALRMYLFLITGIDLVDMSEGTL-KSILSHSNITQLAKDLILNRLASSGSAIL---KLNTL 295 L+ LF G+ + + +++T L +L + A + L Sbjct: 564 QLQTVLFDELGMPKTKKIKTGFSTDAEALADLTTKHPHPFLLQLQAYRDATKLRQTVEGL 623 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +++ SD R+ T A+ TGR S QN+P + Sbjct: 624 IKSIGSDTRVHTTYAQNVAA-TGRLSSNNPNLQNIPIRS--------------------- 661 Query: 356 PLGLASDCVRSCIIASN-----GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R + + L+ AD + IE R++A ++G++ I+AF +GED++ Sbjct: 662 ---EEGRRIRGAFVVGQKSTKSYETLLTADYSQIEMRIMAHLSGDEALIQAFKDGEDLHR 718 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNV 466 + FN +V+ R+ K M L Y G +K ++ + Sbjct: 719 FVGSHIFNVEPQEVTSAMRSKVKAMSYGLVYGLSSFGLSKQLNISVDEARTLMKDYFDRF 778 Query: 467 KSTSTFED-----------WEQAESHHLW----------MQDQYPEFAVKDKLIGTACEL 505 + + E ES + +++ A+ + G+A ++ Sbjct: 779 GAVRDYLRGVVEQARLDGFTETIESRRRYLPELTSDNRQLREMSERAALNAPIQGSAADI 838 Query: 506 VKKAWRAKHQGVL------QLWKDLTEGFACVVQEG 535 +K+A G+ ++ + + V EG Sbjct: 839 IKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEG 874 Score = 41.6 bits (96), Expect = 0.39, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 7/58 (12%) Query: 602 VQAISRDILCEGMKNATK----NGY--DIVLTVHDEIVSETPDTPYFSVGTLC-SLMT 652 +Q + DI+ M G ++L VHDE+V E + V L + M Sbjct: 831 IQGSAADIIKRAMLGVDAGIAEAGLESRMLLQVHDELVFEVAEGELDQVQALVIAQMA 888 >gi|226360133|ref|YP_002777911.1| DNA polymerase I [Rhodococcus opacus B4] gi|226238618|dbj|BAH48966.1| DNA polymerase I [Rhodococcus opacus B4] Length = 914 Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 94/530 (17%), Positives = 168/530 (31%), Gaps = 88/530 (16%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPS--SLKNACLALNF 118 L D H + + + G + LA P + L+L + Sbjct: 396 LADAEQPKALHEAKWAMHALR---GRGWVLGGLTSDTALAAYLVRPGQRTFNLDDLSLRY 452 Query: 119 SEHLTKMEE-GKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 ++EE G+ ++ D A ++ + + Sbjct: 453 LRRELRVEETGQEQLSLLDDADQ----VDAEAAETEILSARAVLDLAAALDTELDNIEST 508 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQ 237 LS+ E L + I G +D + LQ A E + E + I + Sbjct: 509 ALLSEMELPLLEVLAVIEASGIAVDGTHLHDLQSRFAAEVSEAAEAAYGVIGKQI-NLGS 567 Query: 238 TYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKDLILNRLASSGS 287 L++ LF + L+++ SH + L RL + Sbjct: 568 PKQLQVVLFDELEMPKTKKTKTGYTTDAEALQNLFEKTSHPFLEHLLAHRDATRLKVT-- 625 Query: 288 AILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQAL 347 ++ L + V+ DGR+ T A+ TGR S QN+P + Sbjct: 626 ----VDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT------------- 667 Query: 348 NRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 A +R + G L+ AD + IE R++A ++G+ I+AF GE Sbjct: 668 -----------DAGRQIRDGFVVGEGYDSLLTADYSQIEMRIMAHVSGDAGLIEAFNTGE 716 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQF 462 D++ A+AF PI++V+ E R K M L Y G A K ++ + Sbjct: 717 DLHSFVGARAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKISTEEAKSQMEAY 776 Query: 463 SQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGT 501 + ++ + ++ A+ + GT Sbjct: 777 FARFGGVRDYLHEVVEQARKDGYTSTLYGRRRYLPDLTSDNRQRREVAERAALNAPIQGT 836 Query: 502 ACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 A +++K A K + +LQ+ +L +E R Sbjct: 837 AADIIKVAMINVQRSLREAGLKSRMLLQVHDELVLEVVDSEREQVEQLVR 886 >gi|302533846|ref|ZP_07286188.1| predicted protein [Streptomyces sp. C] gi|302442741|gb|EFL14557.1| predicted protein [Streptomyces sp. C] Length = 483 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 62/394 (15%), Positives = 128/394 (32%), Gaps = 62/394 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L + E L + G D D + +++ A ++ ++ + Sbjct: 80 LHEMELPTSELLARLERAGIAADRDHMEGMEQQFAGAVQQAVKEAHAAVGHEF-NLGSPK 138 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L+ F + ++ + D L + KL L Sbjct: 139 QLQEVFFGELDLPKTKKTKTGYTTDADALAWLATQTDHELPVIMLRHREQAKLRVTVEGL 198 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +++++DGR+ + A+ TGR S QN+P + Sbjct: 199 VKSIAADGRVHTSFSQTTAA-TGRLSSTDPNLQNVPVRT--------------------- 236 Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + L+ AD + IE RV+A ++ ++ I+AF +GED++ T + Sbjct: 237 ---DEGRAIRRGFVVGEGYESLMTADYSQIELRVMAHLSEDEGLIEAFLSGEDLHTTVAS 293 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F +V E R K M L Y G A+ + ++ F + Sbjct: 294 QVFGVERSQVDAEMRRKIKAMSYGLAYGLSAFGLAQQLNIEPAEARGLMETFFERFGGVR 353 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + E+ + ++ A+ + GTA ++VK A Sbjct: 354 DYLQRVVDEARATGYTATVFGRRRYLPDLNSDNRQRREAAERMALNAPIQGTAADIVKVA 413 Query: 510 WRAKHQGVL------QLWKDLTEGFACVVQEGGS 537 + + ++ + + + G + Sbjct: 414 MLRVDKAIAEAGLKSRMLLQVHDEIVLEIAPGEA 447 >gi|262037120|ref|ZP_06010613.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] gi|261748851|gb|EEY36197.1| DNA-directed DNA polymerase [Leptotrichia goodfellowii F0264] Length = 842 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 69/360 (19%), Positives = 133/360 (36%), Gaps = 58/360 (16%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + ++ G +I+ + ++ + + +KL+ +I L + L Sbjct: 504 ENKLVPVLASMEMYGIKINKEYFENYKKELQENIEKLEGEIYSLLGEAF-NIGSPKQLAE 562 Query: 244 YLFLITGIDLVDMSE---GTLKSILSHSNI--TQLAKDLILNRLASSGSAILKLNTLSEA 298 LF GI+ V ++ T +L + ++A+ L+ R + + L + Sbjct: 563 ILFDKMGIEPVKKTKTGYSTDVEVLEELALRGIEIAEKLLEYR-GFTKLLSTYVEPLPKL 621 Query: 299 VSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLG 358 R+ T G + TGR S QN+P + Sbjct: 622 ADEKDRIHTTFNQNG-TSTGRLSSTNPNIQNIPVRT------------------------ 656 Query: 359 LASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN 418 +R I+ G LV D + IE RVLA ++ ++ + A+ +D++ T K F Sbjct: 657 DEGIKIRKGFISEEGWSLVSFDYSQIELRVLAELSKDENLVLAYKKDKDLHDLTARKIFF 716 Query: 419 TPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFE 473 ++ V++E+R+I KV+ ++ Y G +K K + L ++ + + F Sbjct: 717 KADEEQVTREERSIAKVINFSILYGKTPFGLSKELKIPVADASLYIKTYFEQYPKVKRFL 776 Query: 474 D---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + S + +Q Q AV + GTA ++KK Sbjct: 777 ENILENAKLNGFVETLYGTRRYIKGINSSNKNLQAQANRMAVNTVVQGTAANIIKKVMIK 836 >gi|270290448|ref|ZP_06196673.1| DNA polymerase I [Pediococcus acidilactici 7_4] gi|270281229|gb|EFA27062.1| DNA polymerase I [Pediococcus acidilactici 7_4] Length = 885 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 81/519 (15%), Positives = 168/519 (32%), Gaps = 79/519 (15%) Query: 33 CAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 C +A D+ + + D E P+ L + L ++ V+ + + + LG+ + S Sbjct: 341 CGFAIGTDKELWVSDDVELLREPA-LSEILANQKVVVNVFDGKRTYVGLHR-LGVTLNSI 398 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 + + + + L H +E+ K + G+ + P Sbjct: 399 NY-DILLQSYLLDT----NDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAVPAKDVLLE 453 Query: 152 HVQAWQLFGEYCKRDVEAT--RELFKRLIPLSD------GERDLWLLDQTINDRGYRIDL 203 H+ K DV R L + LI E L ++ + G ++D Sbjct: 454 HLAH--------KIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGIKVDR 505 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + +Q + + +L+ I + + L LF ++ ++ T Sbjct: 506 ERLGAMQSELTERLSELESQIHQEAGEEF-NINSPKQLGHILFEKLEFPVIKKTKTGYST 564 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 ++L D IL+ + ++ L + + S + T ++TGR Sbjct: 565 AVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQTGRL 624 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P + +R + S G ++ + Sbjct: 625 SSTDPNLQNIPIR------------------------IEEGKKIRQAFVPSHEGWHILSS 660 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELA 438 D + IE RVLA I G+ +AF EDI+ +T + F +V+ R K + Sbjct: 661 DYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFG 720 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474 + Y G ++ + + + + D Sbjct: 721 IVYGISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRR 780 Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + ++ A+ + G+A +++K A Sbjct: 781 YLPDIHASNFSVRSFAERTAMNTPIQGSAADIIKIAMIN 819 >gi|304384670|ref|ZP_07367016.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] gi|304328864|gb|EFL96084.1| DNA-directed DNA polymerase I [Pediococcus acidilactici DSM 20284] Length = 885 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 81/519 (15%), Positives = 168/519 (32%), Gaps = 79/519 (15%) Query: 33 CAYAWD-DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSK 91 C +A D+ + + D E P+ L + L ++ V+ + + + LG+ + S Sbjct: 341 CGFAIGTDKELWVSDDVELLREPA-LSEILANQKVVVNVFDGKRTYVGLHR-LGVTLNSI 398 Query: 92 RWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRAN 151 + + + + L H +E+ K + G+ + P Sbjct: 399 NY-DILLQSYLLDT----NDNSNDLGQLAHEHDIEDIKTDAEVYGTGAKRAVPAKDVLLE 453 Query: 152 HVQAWQLFGEYCKRDVEAT--RELFKRLIPLSD------GERDLWLLDQTINDRGYRIDL 203 H+ K DV R L + LI E L ++ + G ++D Sbjct: 454 HLAH--------KIDVIGELGRRLQEELINNQQADLYWKIELPLSIVLAKMEISGIKVDR 505 Query: 204 DLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GT 260 + + +Q + + +L+ I + + L LF ++ ++ T Sbjct: 506 ERLGAMQSELTERLSELESQIHQEAGEEF-NINSPKQLGHILFEKLEFPVIKKTKTGYST 564 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 ++L D IL+ + ++ L + + S + T ++TGR Sbjct: 565 AVNVLEKLRGYSPIIDHILDYRTIAKIKSTYVDGLLKVIHSTDQKVHTTYQQTLTQTGRL 624 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVA 379 S QN+P + +R + S G ++ + Sbjct: 625 SSTDPNLQNIPIR------------------------IEEGKKIRQAFVPSHEGWHILSS 660 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELA 438 D + IE RVLA I G+ +AF EDI+ +T + F +V+ R K + Sbjct: 661 DYSQIELRVLAHITGDHHLQEAFKKDEDIHSSTAVRIFGLKDASEVTPNIRRQAKAVNFG 720 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED-------------------- 474 + Y G ++ + + + + D Sbjct: 721 IVYGISDYGLSQNIGISRKDAKRFIDTYFKEYPGVKKYVDGSVETAREKGYVETIAHRRR 780 Query: 475 -WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + ++ A+ + G+A +++K A Sbjct: 781 YLPDIHASNFSVRSFAERTAMNTPIQGSAADIIKIAMIN 819 >gi|190571485|ref|YP_001975843.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018887|ref|ZP_03334695.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357757|emb|CAQ55209.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995838|gb|EEB56478.1| DNA polymerase I [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 842 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 69/416 (16%), Positives = 141/416 (33%), Gaps = 68/416 (16%) Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDG-ERDLWLLDQTINDRGYRIDLDLV 206 + +V+ + + R ++L + + +R L + + G +++ + Sbjct: 413 NLSKNVETFSAKILIAIHEKLTQRLFQEKLFTIYERFDRPLMKVIFDMEQNGILLNIQKL 472 Query: 207 LKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 +L + Q L+ DI L + L LF + S+ + + Sbjct: 473 QELSDKFEQLIAVLENDIHNLAGEKFNIA-SPKQLSDVLFNKMELSKKKKSK-SGSYSTN 530 Query: 267 HSNITQLAKD------LILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGR 319 + + L ++ ILN S + L + V DGR+ + + TGR Sbjct: 531 YEVLEALEEEGVEIASKILNWRHLSKLKGTYTDALIKQVDPIDGRIHTSFS-TTVTATGR 589 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVA 379 S QN+P + + +R IA G K++ A Sbjct: 590 LSSSNPNLQNIPIRS------------------------EEGNFIRQAFIAPKGCKIISA 625 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE ++LA +A +AFAN +DI+ T + F ++ ++ R K + + Sbjct: 626 DYSQIELKLLAHVANVTAFKEAFANRQDIHDITARQVFGV--QEIDEQLRRKAKTINFGI 683 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHH------------- 482 Y G AK + + + + + + + Sbjct: 684 IYGISPFGLAKRLGITFQEAAEYINYYFSCYPEIKVYMEKAVSIARNHGYVETLFGRRCF 743 Query: 483 --------LWMQDQYPEFAVKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524 +++ A+ L GTA +++K+A + +LQ+ +L Sbjct: 744 VRDINNKIPYLRQFAERAAINAPLQGTAADIIKRAMIRLFDQLKSGKIILQVHDEL 799 Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%) Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 Q + DI+ M I+L VHDE++ E ++ V LM Sbjct: 768 QGTAADIIKRAMIRLFDQLKSGKIILQVHDELLVEVEES---RVQETAKLM 815 >gi|300787986|ref|YP_003768277.1| DNA polymerase I [Amycolatopsis mediterranei U32] gi|299797500|gb|ADJ47875.1| DNA polymerase I [Amycolatopsis mediterranei U32] Length = 882 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 63/410 (15%), Positives = 136/410 (33%), Gaps = 62/410 (15%) Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G +DL+ + L+ + E+ + I + L++ LF G+ Sbjct: 492 ELEIAGVAVDLEQLTTLEAHYLSRVTQAAEEAYAVIGKQI-NLGSPKQLQVVLFDELGMP 550 Query: 253 LVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----LSEAVSSDGRLRGT 308 ++ + + + KL T L ++V+ DGR+ T Sbjct: 551 KTKRTKTGYTTDAEALQGLFEKTEHPFLQHMLEHRDATKLRTTVEGLIKSVADDGRIHTT 610 Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368 L + TGR S QN+P + +R Sbjct: 611 L-LQTIAATGRLSSTEPNLQNIPVRT------------------------EEGRRIRDAF 645 Query: 369 IASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKE 427 + G L+ AD + IE R++A ++ ++ I+AF +GED++ ++AF+ P ++++ E Sbjct: 646 VVGEGFTELMTADYSQIEMRIMAHLSQDEGLIEAFNSGEDLHTFVASRAFSMPPEEITPE 705 Query: 428 QRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED--------- 474 R K M L Y G ++ + ++ + + Sbjct: 706 LRYRVKAMSYGLAYGLSAYGLSQQLRISTEDAKSQMEAYFDRFGGVRDYLHSVVGVAAKN 765 Query: 475 ------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL---- 518 S + ++ A+ + G+A +++K A H+ ++ Sbjct: 766 GYTETVFGRRRYLPDLNSDNRQRREMAERMALNAPIQGSAADIIKVAMLNVHRALVEAKL 825 Query: 519 --QLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 ++ + + V EG ++ + + + R Sbjct: 826 KSRILLQVHDELVLEVAEGEKEQLEQLVREGMGSAYALAVPLEVSVGYGR 875 Score = 46.7 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M N + I+L VHDE+V E + + L Sbjct: 801 IQGSAADIIKVAMLNVHRALVEAKLKSRILLQVHDELVLEVAEGEKEQLEQLVR 854 >gi|315926202|ref|ZP_07922402.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] gi|315620646|gb|EFV00627.1| DNA-directed DNA polymerase [Pseudoramibacter alactolyticus ATCC 23263] Length = 656 Score = 201 bits (510), Expect = 4e-49, Method: Composition-based stats. Identities = 112/576 (19%), Positives = 201/576 (34%), Gaps = 106/576 (18%) Query: 7 DIETRSPQPLPKVGVWAY-AEQAVITLCAYAWDDEPVKLWDRTEQSAM----PSDLLQYL 61 D ET K A A +A IT +++ + + + P L +L Sbjct: 26 DFETAPDNEYRKEPKAALDAHKAHITGVSFSVTEGDAIYVPLAHRVGVNCEDPDALWAFL 85 Query: 62 RDE-----TVMCVAHNSLFERILF-KKTLGIDIPSKRWICTSVLARTN-----GLPSS-L 109 ++ V+C+AHN FE + K+ + + P I + L + GL S L Sbjct: 86 KESIFESHDVICIAHNLSFEAMFLYKQGIVVQEPCYDTIAAAQLTMKSKWEFRGLHDSGL 145 Query: 110 KNACLAL---NFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA-WQLFGEYCKR 165 K +L + + + +G+ ++ Y C +++ + F + R Sbjct: 146 KLLATSLFGADMPS-FSSVTDGRHF-DEMNPQEYETVRYACADSDYTLCLYYKFNNWFDR 203 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 + A R + ++L E ++ + G +D +L+ Q + L +I Sbjct: 204 FLPAHRIITEQL------ESPTAVMVGCMKYNGIPVDRKAMLEKQTEAVAKVDALKAEIN 257 Query: 226 KLTDG-IIRSSRQTYALRMYLFLITGIDLVDMSEGTLK-------SILSHSNITQLAKDL 277 +LT G I ++ T A + YL+ G+ ++ +E + +L + + Sbjct: 258 ELTGGVNIGANASTSAFKQYLYKDLGLPVLKKTEKNQEAADDAAMQLLEEYCAQHRPELV 317 Query: 278 ILNRLASSGSAILKLNT------LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLP 331 L + KL + L S+ GR+ L G + TGRW+ QN P Sbjct: 318 RLFQAVQEYRKWGKLKSTYIDGYLDHVNSATGRIHPDLMPLG-TDTGRWAARNPNMQNAP 376 Query: 332 RQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAW 391 R DP+G +R+ I+A G+ ++ D + IE RV A+ Sbjct: 377 R-------------------KTNDPIG-----IRNFIVAPPGQIIMSLDFSQIELRVGAF 412 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDK-------VSKEQRAIGKVMELALGYQGG 444 + ++ + +G DI+ T + F P + KE R I K + Y Sbjct: 413 YCRDPKMLETYRSGGDIHAQTTSVVFGVPFEVAVDKNAPNYKEHRTIAKNCNFGVFYGLF 472 Query: 445 AKVF-KTMASHCGLD-----------------------LQQFSQNVKSTSTFEDW----- 475 + KT+ GLD ++ T E W Sbjct: 473 PRGLQKTLRFKAGLDTSFERCKEIIDNLKSGYSGLTTWQEETKARAAKTCYAETWMGRRR 532 Query: 476 --EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 S A+ + GTA +++K A Sbjct: 533 YLPHMLSSDWGKHSFAERCALNTPVQGTAADILKAA 568 Score = 41.3 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 602 VQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFSVGT-LCSLMTKNP 655 VQ + DIL + +L +HDE+V P+ + M + P Sbjct: 557 VQGTAADILKAACARIVAGFPERPWLKPILQIHDELVFLLPEERLLEAQQFVKKCMEQQP 616 Query: 656 SWAKGLPLKAE 666 +P+ AE Sbjct: 617 YPDFDVPIVAE 627 >gi|315650935|ref|ZP_07903975.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] gi|315486781|gb|EFU77123.1| DNA-directed DNA polymerase I [Eubacterium saburreum DSM 3986] Length = 880 Score = 200 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 71/414 (17%), Positives = 143/414 (34%), Gaps = 58/414 (14%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E L + + G R+D + + + ++ KL+ I+ + Sbjct: 480 YENVELPLIYSLARMENTGVRVDEKRLKDYADTLLEKISKLEASIIDKAGESF-NINSPK 538 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNT----- 294 L LF + ++ + + +LA + + R + KLN+ Sbjct: 539 QLGEILFGKLKLSGGKKTK--TGYSTAADVLEKLAPEHEIIRDILEYRQLTKLNSTYATG 596 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L+ + DGR+ G+ + TGR S QN+P + Sbjct: 597 LAGYIRDDGRIHGSFN-QTITATGRISSTDPNLQNIPVRT-------------------- 635 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G V AD + IE RVLA ++G++ I+++ DI+ T A Sbjct: 636 ----EMGSKIRDIFVPKPGYVFVDADYSQIELRVLASMSGDEKLIESYHTAADIHAATAA 691 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F+ P+DKV+ E R K + + Y G ++ + + + + Sbjct: 692 QVFHVPLDKVTPELRRNAKAVNFGVVYGISAFGLSEDLSISRKEALDYINNYFKIYEGVK 751 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 F D + A++ + + A+ + G+A +++K A Sbjct: 752 RFLDKQVADAKEKGYVKTMFGRIRPIPEIKSSNFMTRSFGDRVAMNSPIQGSAADIMKIA 811 Query: 510 WRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLP 563 + + + D + + V V +V R + V + +P Sbjct: 812 MIRVDEALNKSGFDANIVLQIHDELLVEVRKDEVYKVKEIVERSMREAVSLKVP 865 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 590 ERTYGGKLTENI-VQAISRDILCEGMKNATKN----GYD--IVLTVHDEIVSETPDTPYF 642 R++G ++ N +Q + DI+ M + G+D IVL +HDE++ E + Sbjct: 787 TRSFGDRVAMNSPIQGSAADIMKIAMIRVDEALNKSGFDANIVLQIHDELLVEVRKDEVY 846 Query: 643 SVGTLCS 649 V + Sbjct: 847 KVKEIVE 853 >gi|255327557|ref|ZP_05368624.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] gi|255295451|gb|EET74801.1| DNA polymerase I [Rothia mucilaginosa ATCC 25296] Length = 1003 Score = 200 bits (509), Expect = 6e-49, Method: Composition-based stats. Identities = 78/465 (16%), Positives = 152/465 (32%), Gaps = 85/465 (18%) Query: 138 GSIDSPPYDCTRANHVQAWQLF---GEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194 S+ S P + ++++ + R + E +L + E L + + Sbjct: 535 PSLFSLPGEAEPVDNLRYFTQISRIIHELARLLHYEMEEHGQLKVYEEIELPLLYVLADM 594 Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR--------SSRQTYALRMYLF 246 G + L+ +L + + + + + ++ + L+ LF Sbjct: 595 EQAGIAVSDALLTELHDTFSARANQAQDAARTIIGDTVQTDDGEEPLNLASVKQLQTVLF 654 Query: 247 LITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----------NTLS 296 + + S + S LAK + A+ A+ L Sbjct: 655 DKLALPHTRKIKSGY-STDAESVTELLAKISPESDGAAFLGALAAYRDNIKLVQTVEGLQ 713 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 +A + DGR+ T Q GA+ TGR S QN+P + Sbjct: 714 KAAADDGRVHTTFQ-QGAASTGRLSSTAPNLQNIPIRT---------------------- 750 Query: 357 LGLASDCVRSCIIAS-------NGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIY 409 +R I + + L+ AD + IE R++ +A ++ I A+ GED++ Sbjct: 751 --EEGRRIRGAFIVAPAPVDGVEYEGLLTADYSQIEMRIMVHLAADEKLIAAYEAGEDLH 808 Query: 410 VTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQN 465 ++ F ++V+ EQR+ K M L Y G AK + G + + Sbjct: 809 RYVGSEVFGVAPEEVTPEQRSKVKAMSYGLAYGLSRFGLAKQLNISSDEAGELRTNYFKR 868 Query: 466 VKSTSTFEDWEQAESHHLW---------------------MQDQYPEFAVKDKLIGTACE 504 F ++H ++ A+ + GTA + Sbjct: 869 FGRVGRFLRGVLKQAHQDGYTETIFGRRRVLPDLDSPNRVRREAAERAALNAPIQGTAAD 928 Query: 505 LVKKAWRAKHQGVL------QLWKDLTEGFACVVQEGGSISARRV 543 ++K A H+ + ++ + + V G +A RV Sbjct: 929 IIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERV 973 Score = 41.6 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%) Query: 602 VQAISRDILCEGM----KNATKNGYDIVL--TVHDEIVSETPDTPYFSVGT-LCSLMT 652 +Q + DI+ M + + G + VHDEI+ E + L M+ Sbjct: 922 IQGTAADIIKIAMINIHRRLREEGLKTRMLLQVHDEIILEVATGEREAAERVLVEEMS 979 >gi|294790756|ref|ZP_06755914.1| DNA polymerase I [Scardovia inopinata F0304] gi|294458653|gb|EFG27006.1| DNA polymerase I [Scardovia inopinata F0304] Length = 976 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 81/485 (16%), Positives = 170/485 (35%), Gaps = 87/485 (17%) Query: 104 GLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYC 163 L + + +E +E +A AR + + D+ A H QLF Sbjct: 504 ALDLGNDSDLSSQGSNEDNQPDQEDQAAQAR--RDARDAKECAYILALH----QLFYPVL 557 Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 ++ + + L D E + + + G +D + + + A + + + Sbjct: 558 EK--------RQEISLLKDIELPVSTVLARMELTGAGVDYSRLRNMYDSFAAQAAQAEHI 609 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQLAKDLIL 279 I + + L+ LF G++ ++ T + L I + + Sbjct: 610 AWDQAGKQI-NLQSPKQLQAVLFDDMGLEPTRKTKSGGRTTNAAALQELYIRSVHNERAN 668 Query: 280 NRL--ASSGSAILKL----NTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPR 332 L + KL TL ++V+ SDGR+ T + A+ TGR S QN+P Sbjct: 669 TFLGALLRHREVNKLKQIVQTLMDSVNTSDGRIHTTFEQTVAA-TGRLSSTDPNLQNIPN 727 Query: 333 QERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAW 391 + + +R+ + S+G L+ +D + +E R++A Sbjct: 728 R------------------------NVEGREIRAAFVPSDGYLSLLSSDYSQVELRLMAH 763 Query: 392 IAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKV 447 ++G++ I+AF +G D + + + P+D+++ +QR+ K M L Y G A+ Sbjct: 764 LSGDEALIEAFRSGADFHKYVASLVYQVPLDQITPDQRSHIKAMSYGLAYGLSTYGLAQQ 823 Query: 448 FKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQ 486 + ++ + + + S ++ Sbjct: 824 LGISPAQSDQLKAKYFSTFGKVHDYLESLVSQAKKRGYTTTMFGRRRYFPDLLSSRRQLR 883 Query: 487 DQYPEFAVKDKLIGTACELVKKAWRAK----------HQGVLQLWKDLTEGFACVVQEGG 536 D A+ + G+A +++K A + +LQ+ +L A +E Sbjct: 884 DAAQRAALNAPIQGSAADIMKIAMNKAATSLDEAGVKSRIILQIHDELVVELASGEEEEV 943 Query: 537 SISAR 541 + + Sbjct: 944 TALVK 948 Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + G I+L +HDE+V E V L Sbjct: 895 IQGSAADIMKIAMNKAATSLDEAGVKSRIILQIHDELVVELASGEEEEVTALVK 948 >gi|269795325|ref|YP_003314780.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] gi|269097510|gb|ACZ21946.1| DNA polymerase I [Sanguibacter keddieii DSM 10542] Length = 901 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 54/358 (15%), Positives = 119/358 (33%), Gaps = 56/358 (15%) Query: 190 LDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLIT 249 + + G +D+D + +L++ + ++ + + L+ LF Sbjct: 508 VLVHMERHGIAMDVDYLRELEQHFGELVTGAAASAYEVIGREV-NLGSPKQLQEVLFDQL 566 Query: 250 GIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTLSEAVSSDGRL 305 + + + + + + + +L L ++V+ DGR+ Sbjct: 567 DMPKTKKIKTGYTTDAAALADLFVKTEHPFLKFLLDHRDSTRLRQTVEGLLKSVADDGRI 626 Query: 306 RGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVR 365 T Q A+ TGR S QN+P + + +R Sbjct: 627 HTTFQQTIAA-TGRLSSTEPNLQNIPIRTEA------------------------GRRIR 661 Query: 366 SCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKV 424 + +G L+ AD + IE R++A ++G++ I+AF GED++ ++ F V Sbjct: 662 RAFVVGDGYETLLTADYSQIEMRIMAHLSGDEGLIEAFRTGEDLHNYVGSRVFQVETSAV 721 Query: 425 SKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES 480 + R+ K M L Y G + ++ + T+ E+ Sbjct: 722 TPAMRSKIKAMSYGLAYGLSSFGLSNQLNIDVKEASKLMEDYFTRFGGVRTYLAGVVDEA 781 Query: 481 H---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV 517 + ++ A+ + G+A +++K A + + Sbjct: 782 RANGYTATIMGRRRYLPDLTSDNRQRREMAERMALNAPIQGSAADIIKVAMLGVEKEI 839 >gi|295111897|emb|CBL28647.1| DNA polymerase I [Synergistetes bacterium SGP1] Length = 850 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 78/432 (18%), Positives = 152/432 (35%), Gaps = 68/432 (15%) Query: 157 QLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQTINDRGYRIDLDLVLKLQELIAQ 215 LF D TR + L + + + L + + G R+D LQE +A Sbjct: 427 ALFRLRQGLDAAMTR--HQGLRDVMEGIDLPLIPVLLRMERWGVRLDPSRFAALQEELAA 484 Query: 216 ERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + ++ + + + + + LF+ G ++G + + LA+ Sbjct: 485 RIRAIEAQVEDMAGTAV-NLNSPKQVADLLFVQLGFAPEGKTKGKTGFSTGAAVLEHLAR 543 Query: 276 DL--ILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQP 327 + L + K+ + L +A +G + T + + TGR S Sbjct: 544 LPGGEVPALLLEHRELSKMQSGFVVPLQKAAEEGEGVIHTTFEP-ALTGTGRLSSRDPNL 602 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEA 386 QN+P G ++ ++ ++ G V AD + IE Sbjct: 603 QNIP------------------------AFGQWAERIKQGLVPVREGNVFVAADYSQIEL 638 Query: 387 RVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG-- 444 RVLA ++ E ++AF NG DI+ T + F+ + V+ E R + K++ L Y Sbjct: 639 RVLAHMSREPRLVEAFRNGRDIHRETASWVFSMAPEFVTPELRRVAKMINFGLLYGMSAF 698 Query: 445 --AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYP------------ 490 A+ + ++++ + + +F E+H Sbjct: 699 GLAERLDMPRGEASMIVKRYFEALPGVQSFLKDIVKEAHAAGFARTLAGRIRPVDEVTAQ 758 Query: 491 ------EFAVKDKLIGTACELVKKAWRA-----KHQGVLQLWKDLTEGFACVVQEGGSIS 539 V + GTA ++ +KA +H G ++L+ + + C E + Sbjct: 759 GRGGLDRVLVNTPIQGTAADIARKAMVDFDRAFRHDGEVRLFLQVHDSLVC---ECPAAR 815 Query: 540 ARRVANVPRLVM 551 A V + R +M Sbjct: 816 AEEVGHSLREIM 827 >gi|84999262|ref|XP_954352.1| DNA polymerase i [Theileria annulata] gi|65305350|emb|CAI73675.1| DNA polymerase i, putative [Theileria annulata] Length = 1786 Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats. Identities = 111/676 (16%), Positives = 209/676 (30%), Gaps = 178/676 (26%) Query: 14 QPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTE--------QSAMP--------S 55 + G+ + I L + ++P + D + + +P Sbjct: 1224 VDIETTGL----DHNTNQIRLVQLSVPNQPSVIIDLFKLNTNNPESDNVVPGRNELIKCE 1279 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L + + + V HN F+ + + I +++A + Sbjct: 1280 WLKNLFKSKDTVKVFHNGKFDINFLR---VYGFEFEGPIFDTMVASKL--------LVAS 1328 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174 S LT + E + Y + + +Q ++ Y RD L+ Sbjct: 1329 RYISCKLTHVSE-----RYLNIVLDKTQQY--SDWSTLQLFEEQLLYSARDSFVLLPLYV 1381 Query: 175 --------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV- 225 L ++ E L + G ++D D + LQ+ + QE +++ D+ Sbjct: 1382 ILEHLLKINNLADIASVENKCILATSDMELNGIKVDEDKLRILQDELKQEHQEISNDLYS 1441 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L I + Q + L + + ++D S+ + S S S + + + I++ L Sbjct: 1442 QLNHSEINLNSQ----KQVLEKLQELKIMDRSKKKIISDTSESTLIRNMSNPIISSLREY 1497 Query: 286 GSAILKL----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 A L L ++ R+ GA +GR+S Q +PR ++ Sbjct: 1498 RKANKALTAFTQKLPNHINPITKRIYPNYNQLGA-ESGRFSCDGPNLQQVPRDKK----- 1551 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 R C +A G K V+AD + IE R+ A IA + I+ Sbjct: 1552 -----------------------FRECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQ 1588 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ D++ T + N I++V+KE+R + K + L + + Sbjct: 1589 AYQQNVDLHSLTASILKNKSINEVNKEERQLAKAVNFGLIFGMSINGLRM---------- 1638 Query: 461 QFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQL 520 Y E KL T + + ++ +G+L Sbjct: 1639 ----------------------------YAETGYNLKLTQTEAKEIYTSFFNNFKGILNW 1670 Query: 521 WKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYL 580 + +V+ + + R L Y Sbjct: 1671 HNSVKNSRPTMVR------------TLGNRLSVFESFSFT-----RSLNYP--------- 1704 Query: 581 NTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATKN----GYDIVLTVHDEIVSET 636 VQ S DI E M + I++ VHDEI+ E Sbjct: 1705 ---------------------VQGTSADITKETMARLVDSVKPLNAKIIICVHDEIILEV 1743 Query: 637 PDT-PYFSVGTLCSLM 651 P+ ++ L M Sbjct: 1744 PEDNAEKALKMLIDTM 1759 >gi|315103141|gb|EFT75117.1| DNA-directed DNA polymerase [Propionibacterium acnes HL050PA2] Length = 892 Score = 199 bits (507), Expect = 8e-49, Method: Composition-based stats. Identities = 89/557 (15%), Positives = 166/557 (29%), Gaps = 107/557 (19%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ H++ K + + W C Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + LA P LN + + +A++ F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLD-FGEDHFAESMERAVAV 469 Query: 151 NHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + DV E E L D E + ++ G +D+D+ L Sbjct: 470 TRLA-----------DVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAVDMDIFEGL 518 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262 + + + +E + I S L+ LF + ++ Sbjct: 519 RSEFDERVTRAEEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALA 577 Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 H + L + +L + ++ L + + DGR+ T + TGR Sbjct: 578 GLYETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGR 630 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P + +R + G + L+ Sbjct: 631 LSSKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLS 666 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M Sbjct: 667 ADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 726 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL----------- 483 L Y G + K + + + + ++ Sbjct: 727 LAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRR 786 Query: 484 ----------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEG 527 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 787 YLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDE 846 Query: 528 FACVVQEGGSISARRVA 544 V +G R + Sbjct: 847 LILEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.52, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|314923227|gb|EFS87058.1| DNA-directed DNA polymerase [Propionibacterium acnes HL001PA1] gi|314966994|gb|EFT11093.1| DNA-directed DNA polymerase [Propionibacterium acnes HL082PA2] gi|315093085|gb|EFT65061.1| DNA-directed DNA polymerase [Propionibacterium acnes HL060PA1] gi|327327814|gb|EGE69590.1| DNA polymerase I [Propionibacterium acnes HL103PA1] Length = 892 Score = 199 bits (507), Expect = 8e-49, Method: Composition-based stats. Identities = 89/557 (15%), Positives = 166/557 (29%), Gaps = 107/557 (19%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ H++ K + + W C Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + LA P LN + + +A++ F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLD-FGEDHFAESMERAVAV 469 Query: 151 NHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + DV E E L D E + ++ G +D+D+ L Sbjct: 470 TRLA-----------DVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAVDMDIFEGL 518 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262 + + + +E + I S L+ LF + ++ Sbjct: 519 RSEFDERVTRAEEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALA 577 Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 H + L + +L + ++ L + + DGR+ T + TGR Sbjct: 578 GLYETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGR 630 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P + +R + G + L+ Sbjct: 631 LSSKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLS 666 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M Sbjct: 667 ADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 726 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL----------- 483 L Y G + K + + + + ++ Sbjct: 727 LAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRR 786 Query: 484 ----------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEG 527 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 787 YLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDE 846 Query: 528 FACVVQEGGSISARRVA 544 V +G R + Sbjct: 847 LILEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|302518444|ref|ZP_07270786.1| DNA polymerase I [Streptomyces sp. SPB78] gi|302427339|gb|EFK99154.1| DNA polymerase I [Streptomyces sp. SPB78] Length = 919 Score = 199 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 72/431 (16%), Positives = 127/431 (29%), Gaps = 45/431 (10%) Query: 61 LRDETVMCVAHNSLFERILFKKTLGID-IPSKRWICTSVLARTNGLPSSLKNACLALNFS 119 L D V H + + G + + L P A AL+ Sbjct: 499 LGDPERPKVMH----DAKGLMRVFGEHGMTVAGVAMDTALGAYLVKPGRRTFALDALSLE 554 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP 179 ++ + + G+ D L R E E Sbjct: 555 YLGRELVPAQESDGQLAFGADDETQARTLMVEARTILDLGTALGARLPEVGAEGL----- 609 Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E L + G D + + +++ A ++ + + Sbjct: 610 LTDIELPTSALLARMERAGIAADREHLEEMERQFAGAVEQAVREAHAAVGHEF-NLGSPK 668 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L+ LF + ++ + + L L KL L Sbjct: 669 QLQEVLFGELNLPKTRKTKTGYTTDADSLAWLAGQTEHELPVLMLRHREQAKLRSTVEGL 728 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++++ DGR+ T A+ TGR S QN+P + Sbjct: 729 IKSIAPDGRIHTTFNQTVAA-TGRLSSTDPNLQNIPVRT--------------------- 766 Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R + G + L+ AD + IE RV+A ++ ++ I AF +GED++ T Sbjct: 767 ---DEGRAIRRGFVVGEGYEALMTADYSQIELRVMAHLSEDEGLIAAFTSGEDLHRTVAG 823 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 FN V E R K M L Y G ++ A + + + Sbjct: 824 YVFNVEPTAVDAEMRRKIKAMSYGLAYGLSAFGLSQQLGIEAGEARALMDTYFERFGGVR 883 Query: 471 TFEDWEQAESH 481 + E+ Sbjct: 884 DYLHRVVEEAR 894 >gi|88856208|ref|ZP_01130868.1| DNA polymerase I [marine actinobacterium PHSC20C1] gi|88814527|gb|EAR24389.1| DNA polymerase I [marine actinobacterium PHSC20C1] Length = 879 Score = 199 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 73/402 (18%), Positives = 143/402 (35%), Gaps = 66/402 (16%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+D E L + + G ++ L+L L + + +++ + ++ I + Sbjct: 476 LTDIEMPLVPVFARMERTGIAVNQQLLLDLSASLTETAQEVARNAFEVIGREI-NLGSPK 534 Query: 240 ALRMYLFLITGIDLVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLN---TL 295 L+ LF + ++ G S +++ + A LN L A + + Sbjct: 535 QLQEVLFTQLEMPKTRANKTGYSTDAASLADLQEQAPHPFLNLLLQHRDATKLVQIITGI 594 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 +A+ GR+ T + G S TGR + QN+P + + Sbjct: 595 EKAIDDSGRVHTTYEQAG-SSTGRIASNDPNLQNVPIKTAT------------------- 634 Query: 356 PLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +RS A G L+ AD + IE R++A ++G++ I+AF GED++ + Sbjct: 635 -----GRQIRSAFEAGAGFDTLLTADYSQIEMRIMAHLSGDEGLIQAFNEGEDLHRFVGS 689 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F +V+ E R K M L Y G +K + S + + + Sbjct: 690 RIFGVEPAEVTAEMRTKVKAMSYGLAYGLSAFGLSKQLRIETSEAKALMTDYFARFGAVR 749 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + S + ++D A+ + G+A +++K A Sbjct: 750 DYLRNVVEQARTDGYTTTIFGRRRPFGDLNSKNRVLRDNAERQALNSPIQGSAADILKLA 809 Query: 510 WRA----------KHQGVLQLWKDLTEGFACVVQEGGSISAR 541 K + +LQ+ +L A E + Sbjct: 810 MLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELERMTTIVH 851 Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 9/125 (7%) Query: 537 SISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGG 595 + A+ + + + V+ +R Y+ + G S+ R Sbjct: 731 TSEAKALMTDYFARFGAVRDYLRNVVEQARTDGYTTTIFGRRRPFGDLNSKNRVLRDNAE 790 Query: 596 KLTENI-VQAISRDILCEGMKNATK----NGYD--IVLTVHDEIVSETPDTPYFSVGTLC 648 + N +Q + DIL M G ++L VHDE+V E + T+ Sbjct: 791 RQALNSPIQGSAADILKLAMLRIDSDMRVEGLKSRMLLQVHDELVFEIAGGELERMTTIV 850 Query: 649 -SLMT 652 M+ Sbjct: 851 HERMS 855 >gi|73666681|ref|YP_302697.1| DNA polymerase I [Ehrlichia canis str. Jake] gi|72393822|gb|AAZ68099.1| DNA polymerase, family A [Ehrlichia canis str. Jake] Length = 861 Score = 199 bits (507), Expect = 9e-49, Method: Composition-based stats. Identities = 72/382 (18%), Positives = 136/382 (35%), Gaps = 65/382 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E+ L + + G +++D++ L +++ L+ +I KL+ + Sbjct: 457 YERVEKPLIRVLDNMEKIGVLVNVDVLKTLSATFSEKINMLESEIYKLSGAEFNIASS-K 515 Query: 240 ALRMYLFLITGIDLVDM----SEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNT 294 L LF GI + T +LS + D IL + + Sbjct: 516 QLGNILFDKMGIKKGKKLSSGNYSTDAEVLSDLAFNDVEIADKILKWRHLTKLKTTYTDV 575 Query: 295 LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + +S+ GR+ T ++ TGR S QN+P + Sbjct: 576 LEKQKNSNSGRVH-TFYSMVSTATGRLSSSNPNLQNIPVRS------------------- 615 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R IA G KL+ AD + IE R++A IA AF +DI+ T Sbjct: 616 -----EEGNSIRRAFIAKKGYKLISADYSQIELRIMAHIADVQAFKNAFFLNQDIHSITA 670 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVFKTMASHCGLDL 459 + FNT +K+ K R K + + Y A + ++ Sbjct: 671 KQIFNT--EKLDKNLRRRAKSINFGIIYGMSAFGLAKQLSISRSEASTYINNYFRSYPEI 728 Query: 460 QQFSQNVKSTSTFEDWEQ-----------AESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 Q + +N+K+ + + + S ++ ++ A+ L GT+ +++K Sbjct: 729 QSYMENIKAYAKTHGYTRTIFGRKCFVKDINSDNVTARNFSERAAINAPLQGTSADIIKM 788 Query: 509 AWR------AKHQGVLQLWKDL 524 + +LQ+ +L Sbjct: 789 SMIHLFDKLKNGSLILQVHDEL 810 >gi|295395318|ref|ZP_06805522.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] gi|294971869|gb|EFG47740.1| DNA-directed DNA polymerase I [Brevibacterium mcbrellneri ATCC 49030] Length = 867 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 74/510 (14%), Positives = 154/510 (30%), Gaps = 93/510 (18%) Query: 81 KKTLGIDIPSKRWICTSVLARTNGLPS----SLKNACLALN--FSEHLTKMEEGKALIAR 134 + R I + LA P SL + L E + + + Sbjct: 378 HAWVERGFTQPRPIMDTELAAYLLAPDARGYSLADMASDLGVVLEEDRDLLTDVGEQLGH 437 Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSD-GERDLWLLDQT 193 ++ P ++D+E L + D E + Sbjct: 438 RAWVTVALYPR-----------------LRQDLE-----RNHLQDVLDGIEIPTQEILAR 475 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G ID ++ +L ++ + + + L+ LF + Sbjct: 476 MEIAGIAIDQSVLNELITEFEAAAQQSASEAYASIGHEV-NLNSPKQLQTVLFDELNMPK 534 Query: 254 VDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLN----TLSEAVSSDGRLRGTL 309 ++ + + + KL L + V+ DGR+ T Sbjct: 535 TKRTKTGYTTDADSLADLLVKTQHPFLEHLLAHRDRTKLKQTVVGLQKVVADDGRIHTTY 594 Query: 310 QFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCII 369 + TGR S QN+P + A +RS Sbjct: 595 -LQTVAATGRLSSKDPNLQNIPVRT------------------------DAGRRIRSVFQ 629 Query: 370 A---SNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSK 426 A + L+ D + IE R++A ++G++ I+AF +GED++ + F PI+ V+ Sbjct: 630 AAQDDGYESLMSVDYSQIEMRIMAHLSGDEALIQAFKDGEDLHRYVAGQVFEVPIEDVTD 689 Query: 427 EQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH- 481 +QR+ K M L Y G ++ + + + + D E+ Sbjct: 690 QQRSKVKAMSYGLVYGLSAYGLSRQLGIPTGEASALMDDYFARFGAVKEYLDQVVEEARG 749 Query: 482 --------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVL--- 518 +++ A+ + G+A +++K A + + Sbjct: 750 RGYTETMYGRRRYLPQLRSDRRQLREMAERAALNAPIQGSAADIMKIAMKRVDDALREAE 809 Query: 519 ---QLWKDLTEGFACVVQEGGSISARRVAN 545 ++ + + + G +I ++ Sbjct: 810 LKSRMLLQVHDEIILEIWAGEAIQVEKLVR 839 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 +Q + DI+ MK ++L VHDEI+ E V L M++ Sbjct: 786 IQGSAADIMKIAMKRVDDALREAELKSRMLLQVHDEIILEIWAGEAIQVEKLVRENMSQA 845 >gi|162447216|ref|YP_001620348.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] gi|161985323|gb|ABX80972.1| DNA polymerase I [Acholeplasma laidlawii PG-8A] Length = 880 Score = 199 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 136/397 (34%), Gaps = 69/397 (17%) Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 DV R +L L+D E L + + +G +DL + + ++ KL +I+ Sbjct: 471 DVLTER---NQLSLLNDVELPLSDVLADMEYQGLTVDLKELENQTKDMSLRIDKLRTEIL 527 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRL 282 L + L LF G+ ++ T +L++ +LI+ Sbjct: 528 LLAGVDF-NVDSPKQLGDVLFDTLGLPNGKKTKTGYSTGIEVLNNLIDHHPIINLIIEYR 586 Query: 283 ASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + L + E+V D R+ + TGR S QN+P + Sbjct: 587 QLTKLYSTYLIGIKESVFEDNRVHTIYN-QALTLTGRLSSLEPNLQNIPIRT-------- 637 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 +R I V AD + IE RVLA +A +AF Sbjct: 638 ----------------EEGRQIRKLFIPEPDSYFVGADYSQIELRVLAAMADVKNLKQAF 681 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--------------AKVF 448 +DI+ T K F+ D V EQR K + + Y G A+ F Sbjct: 682 EEDQDIHTVTAQKVFHV--DTVDSEQRRRAKAVNFGIIYGIGPWSLSEDIGVTVKEAENF 739 Query: 449 KTMASHCGLDLQQFSQNVKSTSTFEDW-----------EQAESHHLWMQDQYPEFAVKDK 497 + +++ + N+ + + + S +++ ++ Sbjct: 740 ISRYLEVYPEIKDYMTNIVEFAKTHGYVETLLNRRRYIPELSSKVFNLREFGKRTSLNAP 799 Query: 498 LIGTACELVKKAW----------RAKHQGVLQLWKDL 524 + GTA +++K A + K + +LQ+ +L Sbjct: 800 IQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVHDEL 836 Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats. Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 12/141 (8%) Query: 522 KDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLN 581 L+E V+E + +R V + V + + Y+ Sbjct: 723 WSLSEDIGVTVKEAENFISR-YLEVYPEIKDYMTNIVEFAKTHGYVETLLNRR---RYIP 778 Query: 582 TATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVS 634 +S++ R +G + + N +Q + DI+ M + K ++L VHDE++ Sbjct: 779 ELSSKVFNLREFGKRTSLNAPIQGTAADIIKLAMIDLHNYLKDNKKKSKLILQVHDELIV 838 Query: 635 ETPDTPYFSVGTLC-SLMTKN 654 E + + ++M K Sbjct: 839 EVVKEELDEMKEVIPNIMEKA 859 >gi|323360012|ref|YP_004226408.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] gi|323276383|dbj|BAJ76528.1| DNA polymerase I - 3'-5' exonuclease and polymerase domains [Microbacterium testaceum StLB037] Length = 879 Score = 199 bits (506), Expect = 1e-48, Method: Composition-based stats. Identities = 62/360 (17%), Positives = 114/360 (31%), Gaps = 56/360 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E + G + + + L D + + Sbjct: 476 LDDIEMPTLTALADMELAGVAVSHAKLSGFSAELGARADALARDAYAAIGHEV-NLGSPK 534 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L+ LF + ++ + + Q + L KL + L Sbjct: 535 QLQEVLFDELQLPKTRKTKSGYTTDAAALADLQESAPHPFLDLLLKHREATKLKQIIDAL 594 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 A DGR+ T G S+TGR S QN+P + Sbjct: 595 DTATGPDGRIHTTYVQTG-SQTGRLSSTDPNLQNIPIRT--------------------- 632 Query: 356 PLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 S +R+ G L+ AD + IE R++A ++G+ I+AF +GED++ A Sbjct: 633 ---EESRRIRAAFEVGEGYETLLTADYSQIEMRIMAHLSGDPGLIEAFNSGEDLHRFVGA 689 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + F +V+ R K M L Y G +K + S + ++ + Sbjct: 690 RVFGVEPAEVTPAMRTKVKAMSYGLVYGLSAFGLSKQLRIEQSEAKKLMLEYFARFGAVR 749 Query: 471 TFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKA 509 + + S + +++ A+ + G+A +++K A Sbjct: 750 DYLRGSVEQARQDGYTETIFGRRRPFPDLTSMNRVLRENAERAALNAPIQGSAADIMKVA 809 >gi|219667033|ref|YP_002457468.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] gi|219537293|gb|ACL19032.1| DNA-directed DNA polymerase [Desulfitobacterium hafniense DCB-2] Length = 583 Score = 199 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 99/555 (17%), Positives = 176/555 (31%), Gaps = 115/555 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D ET + L A +D PV + D +L+ + Sbjct: 28 KVIAVDTETT-GLDPHTC---------QLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 77 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLA-LN 117 + + V N+ F+ + +DI T + ++ G P LA Sbjct: 78 LSTSGVKVFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 134 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 +E L K E+ + + Y RD E L K + Sbjct: 135 LNEDLDKEEQTSNWQG--------------------ELTESQILYAARDAEILLRLRKVM 174 Query: 178 IP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 IP +++ E + RG +D +L E ERK +++ Sbjct: 175 IPQILENHLTQIAEIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYV 234 Query: 229 DGIIRSSRQTYALRMYL--------FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 + + + ++ F L + E + + + L Sbjct: 235 ERPL------MQMSLWGEDVAINQNFESQQFVLNVLHEHGIPVAATAKQDLYPHRRHPLV 288 Query: 281 RLASSGSAILK-----LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 + S K L + + GRL A +GR S Q +PR Sbjct: 289 KTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISA-WSGRMSCWNPNIQQIPRDS 347 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 R+C A G+KL++AD + IE RV A I+G Sbjct: 348 E----------------------------FRACFAAPPGRKLILADYSQIELRVAAQISG 379 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + I A+ GED+++ T + + PI+++S ++R K + L + GA + A Sbjct: 380 DTRMISAYQQGEDLHLLTASLVAHKPIEEISPQERQAAKAVNFGLIFGMGAPGLQQYAQQ 439 Query: 455 -CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-------------------V 494 G+++ F+ + H ++ P+ Sbjct: 440 NYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEGRTLAGRKFVYYEKAGLPGYY 499 Query: 495 KDKLIGTACELVKKA 509 + GTA ++VKKA Sbjct: 500 NTPVQGTAADIVKKA 514 >gi|330872973|gb|EGH07122.1| DNA polymerase I [Pseudomonas syringae pv. glycinea str. race 4] Length = 321 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 111/302 (36%), Gaps = 67/302 (22%) Query: 265 LSHSNITQLAK-DLILNRLASSGSAILKLNT-----LSEAVSS-DGRLRGTLQFYGASRT 317 + + + +LA+ D L ++ ++ KL + L E ++ GR+ + + T Sbjct: 1 TAEAVLAELAEQDFPLPKVLMQYRSMSKLKSTYTDRLPEQINPRTGRIHTSY-HQAVAVT 59 Query: 318 GRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLV 377 GR S QN+P + +R +A G KL+ Sbjct: 60 GRLSSSDPNLQNIPIRT------------------------AEGRRIRQAFVAPKGYKLL 95 Query: 378 VADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMEL 437 AD + IE R++A +A ++ + AF N D++ T A+ F ++ V+ + R K + Sbjct: 96 AADYSQIELRIMAHLAQDEGLLHAFRNDLDVHRATAAEVFGVELENVTTDMRRSAKAINF 155 Query: 438 ALGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE-------------- 479 L Y AK + ++ + + +A+ Sbjct: 156 GLIYGMSAFGLAKQIGVDRKQSQAYVDRYFARYPGVLDYMERTRAQAAEQGFVETIFGRR 215 Query: 480 -------SHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH----------QGVLQLWK 522 + + ++ A+ + GTA +++KKA A + + +LQ+ Sbjct: 216 LYLPDINAKNQSLRKGAERMAINAPMQGTAADIIKKAMVAVNGWLEESGLDARVILQVHD 275 Query: 523 DL 524 +L Sbjct: 276 EL 277 Score = 42.8 bits (99), Expect = 0.17, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 56/169 (33%), Gaps = 16/169 (9%) Query: 493 AVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPRLVMR 552 A ++ G E V R + + F Q G + ++ Sbjct: 129 ATAAEVFGVELENVTTDMRRSAKAINFGLIYGMSAFGLAKQIG--VDRKQSQAYVDRYFA 186 Query: 553 RHKRDV----HIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISR 607 R+ + ++ + + G YL ++ R ++ N +Q + Sbjct: 187 RYPGVLDYMERTRAQAAEQGFVETIFGRRLYLPDINAKNQSLRKGAERMAINAPMQGTAA 246 Query: 608 DILCEGMKNA----TKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCSL 650 DI+ + M ++G D ++L VHDE+V E + V + Sbjct: 247 DIIKKAMVAVNGWLEESGLDARVILQVHDELVLEVREDL---VDQISEQ 292 >gi|237751826|ref|ZP_04582306.1| DNA polymerase I [Helicobacter bilis ATCC 43879] gi|229373192|gb|EEO23583.1| DNA polymerase I [Helicobacter bilis ATCC 43879] Length = 1102 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 81/491 (16%), Positives = 157/491 (31%), Gaps = 91/491 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + HN F+ + GI + +LA L + +++ + K Sbjct: 600 IGHNIKFDLHIAWHNFGIKPK-HTPQDSMLLAW-------LDDPSQSVSLDNLMKK---- 647 Query: 129 KALIARFCKGSIDSPPYDCTRAN-HVQAWQLFGEYCKRDVEATRELF----KRLIP---- 179 F I +A + Y D AT +L+ L P Sbjct: 648 -----HFNHNMIAFSDIVPKKATFDSIDIKTASNYAAEDAAATFQLYFYFKNTLYPHLFT 702 Query: 180 -LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 D E + D G I+ L+ + ++L ++I + + Sbjct: 703 LAKDLEFPFIRTLCAMEDCGIAINYSYFKNLKTTFSHTLQQLQQEIYEKAGVSF-NLNSP 761 Query: 239 YALRMYLFLITGIDLVDMSEG---TLKSIL-----SHSNITQLAKDLILNRLASSGSAIL 290 + LF +D + T ++ L SH + L + + +L S+ Sbjct: 762 KQVAEILFDTLKLDTKRKGKSGYSTDEATLLALKDSHPVVPLLLEYREIFKLFSTY---- 817 Query: 291 KLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + + + ++ R+ T G + TGR S QN+P + Sbjct: 818 -IEPILKLGKNENRIYTTFLQTG-TNTGRLSSKSPNLQNIPVRS---------------- 859 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R ++ +G KL+ D + IE R+LA +G+ +++F N DI+ Sbjct: 860 --------EMGRSIRKGFVSRDGYKLLSLDYSQIELRLLAHFSGDKVLLESFHNNADIHA 911 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466 T F +K R+I K + L Y GA + + ++ + Sbjct: 912 ETAKLLF-KDSNKDFSLLRSIAKSINFGLIYGMGARKLSQTLNITQTEAKQYIEDYFATF 970 Query: 467 KSTSTF--------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACELV 506 S F + + S +M+ + V G+A +L+ Sbjct: 971 PSVKQFLESQKDSILKNGYSSTLLGRKRYFDFFSATEFMRANFLREGVNTIFQGSAADLI 1030 Query: 507 KKAWRAKHQGV 517 K + ++ + Sbjct: 1031 KLSMNEIYKKI 1041 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Query: 598 TENIVQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSV-GTLCSL 650 I Q + D++ M K ++L VHDE++ E D+ S+ L + Sbjct: 1018 VNTIFQGSAADLIKLSMNEIYKKIESLDNDCFMLLQVHDELIFEIKDSIIESLSKELKEI 1077 Query: 651 M 651 M Sbjct: 1078 M 1078 >gi|119025698|ref|YP_909543.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] gi|118765282|dbj|BAF39461.1| DNA polymerase I [Bifidobacterium adolescentis ATCC 15703] Length = 948 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 69/409 (16%), Positives = 151/409 (36%), Gaps = 73/409 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E + + + G ++D+ ++++++ +A + + E + + + + Sbjct: 538 LKSIELPVSQVLHGMEQVGAQVDMARLVQMRDQLAADAAQAQETAWQFAGEQV-NLQSPK 596 Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+++ S A + L LK Sbjct: 597 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLK 656 Query: 292 --LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + TL +A + DGR+ T + A+ TGR S QN+P + Sbjct: 657 QIVQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 700 Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 A +RS + G + L+ +D + +E R++A ++G++ I+AF +G+D Sbjct: 701 ---------DPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKD 751 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+D ++ +QR+ K M L Y G A+ K Q+ Sbjct: 752 FHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLSTYGLAQQLKIKPKEAESLKNQYF 811 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + +S + ++D A+ + G+A Sbjct: 812 ATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSA 871 Query: 503 CELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A ++ + + Sbjct: 872 ADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVK 920 Score = 39.7 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE-TPDTPYFSVGTLCSLM 651 +Q + DI+ M A G ++L +HDE+V E P + + M Sbjct: 867 IQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAM 923 >gi|229817845|ref|ZP_04448127.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] gi|229784745|gb|EEP20859.1| hypothetical protein BIFANG_03130 [Bifidobacterium angulatum DSM 20098] Length = 982 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 87/535 (16%), Positives = 184/535 (34%), Gaps = 82/535 (15%) Query: 57 LLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNA---C 113 ++ T++ + E++ +LG+D+P + + LA P + Sbjct: 452 VILAQYAPTLVVHGY---KEQLHLFASLGVDLPKP--LFDTKLAGYLVQPDFHADTLEQA 506 Query: 114 LALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATREL 173 A H+ + E D+ + +Q + E R + + Sbjct: 507 AARFLDIHVEEKTEEATQGLLDLDDGADADADGNQTSTLLQHAAIIAELA-RALAPQIDQ 565 Query: 174 FKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIR 233 ++ L E + + + +G ++D+ + +++ A + ++ E + Sbjct: 566 REQFGLLQRMELPVSHVLYGMESQGAKVDMQRLTSMRDTFAADARQAQEIAWDYAGTTV- 624 Query: 234 SSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNRLASS 285 + + L LF G+ ++ L+ + + A + L Sbjct: 625 NLQSPKQLGKVLFEDMGLKPTKRTKTGGYTTNADALQKLYFTYADDERASGFLGALLRHR 684 Query: 286 GSAILK--LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 + LK + TL +A + D R+ T + A+ TGR S QN+P + Sbjct: 685 ETNKLKQIVATLIDATNPADERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------- 734 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKA 401 A +RS + G + L+ D + +E R++A ++G++ I+A Sbjct: 735 ---------------NAAGREIRSAFVPGEGFESLMSCDYSQVELRIMAHLSGDESLIEA 779 Query: 402 FANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGL 457 F +G D + + P+D+++ +QR+ K M L Y G A+ K S Sbjct: 780 FKSGADFHKYVASLVHGVPVDQITPDQRSHVKAMSYGLAYGLSSYGLAQQLKIRPSEAEA 839 Query: 458 DLQQFSQNVKSTSTFEDWEQAESH-------HLWMQDQYPEF--------------AVKD 496 ++ F + +E+ + +P A+ Sbjct: 840 LKAKYFATFGKVHDFLESCVSEARKRGYTETMFGRRRYFPALKSTNRAARDAAERAALNA 899 Query: 497 KLIGTACELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541 + G+A +++K A + +LQ+ +L A +E S R Sbjct: 900 PIQGSAADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGEREQVSALVR 954 Score = 42.4 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M + G I+L +HDE+V E V L Sbjct: 901 IQGSAADIMKIAMIRARRALAEAGMKSRIILQIHDELVVEIAPGEREQVSALVR 954 >gi|312880258|ref|ZP_07740058.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] gi|310783549|gb|EFQ23947.1| DNA polymerase I [Aminomonas paucivorans DSM 12260] Length = 844 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 67/376 (17%), Positives = 129/376 (34%), Gaps = 61/376 (16%) Query: 170 TRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 L+ + PL D + L + + RG +D + L + ++L+ + Sbjct: 428 EEPLWPSVAPLVRDLDLPLAPVLARMESRGIGVDEGALASLDVRLEGRSRELEALVRAEA 487 Query: 229 DGIIRSSRQTYALRMYLFLITGIDLVDMSE-------GTLKSILSHSN-ITQLAKDLILN 280 + + + + LF G+ + ++ G L+ + + ++++ + L+ + Sbjct: 488 GEEV-NLQSPKQMAALLFERLGLPPLKKTKTGFSTDVGVLEELAKLPDPLSRVPRHLLEH 546 Query: 281 RLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 R + L +A G + T + A+ TGR S QNLP Sbjct: 547 REVAKLRTGFVQPFLKQAHRDGGHIYSTFE-QTATGTGRLSSRDPNVQNLP--------- 596 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIA-SNGKKLVVADLAGIEARVLAWIAGEDWKI 399 G ++ R C++ S + + AD + IE RVLA + GE + Sbjct: 597 ---------------VFGEWAEAFRRCLVPTSPKDRFLSADYSQIELRVLAHLCGEPRLV 641 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHC 455 +AF G DI+ T + + ++VS EQR KV+ L Y A+ Sbjct: 642 QAFEAGRDIHRETASWVYGVAAEEVSAEQRRFAKVVNFGLLYGMSAHGLAQRMGVGRPEA 701 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESHHLWMQ---------------------DQYPEFAV 494 + ++ + + + E+ AV Sbjct: 702 AQIIDRYFSVLPRVREYLEETVREAKARGYTVSLFGRVRPLGEVSTVEGRGGGALDRVAV 761 Query: 495 KDKLIGTACELVKKAW 510 + TA ++ K A Sbjct: 762 NSPIQSTAADIAKVAM 777 >gi|282854241|ref|ZP_06263578.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] gi|282583694|gb|EFB89074.1| DNA-directed DNA polymerase [Propionibacterium acnes J139] Length = 910 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 89/557 (15%), Positives = 165/557 (29%), Gaps = 107/557 (19%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ H++ K + + W C Sbjct: 377 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 428 Query: 96 TSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + LA P LN + + +A++ F + Sbjct: 429 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLD-FGEDHFAESMERAVAV 487 Query: 151 NHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + DV E E L D E + ++ G D+D+ L Sbjct: 488 TRLA-----------DVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAADMDIFEGL 536 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262 + + + +E + I S L+ LF + ++ Sbjct: 537 RSEFDERVTRAEEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALA 595 Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 H + L + +L + ++ L + + DGR+ T + TGR Sbjct: 596 GLYETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGR 648 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P + +R + G + L+ Sbjct: 649 LSSKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLS 684 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M Sbjct: 685 ADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 744 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL----------- 483 L Y G + K + + + + ++ Sbjct: 745 LAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRR 804 Query: 484 ----------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEG 527 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 805 YLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDE 864 Query: 528 FACVVQEGGSISARRVA 544 V +G R + Sbjct: 865 LILEVAKGEEEKVREIV 881 Score = 41.3 bits (95), Expect = 0.51, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 829 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 881 >gi|227495255|ref|ZP_03925571.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831707|gb|EEH64090.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 893 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 64/392 (16%), Positives = 132/392 (33%), Gaps = 67/392 (17%) Query: 159 FGEYCKRDVEATRELFKRLIPLSDG----------ERDLWLLDQTINDRGYRIDLDLVLK 208 F E + + +L + L + E + + G + +D++ + Sbjct: 460 FSELAGQ-AQVVYDLHEVLFKQLETTQLAELYRGLELPVQADLYELEKHGVAMSMDVLNQ 518 Query: 209 LQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHS 268 L E + ++ + +E + + L+ LF + ++ + Sbjct: 519 LLEELTEQVEVAEEAAYNAIGHKVNLA-SPMQLQTVLFEELQMPKTKKTKRGYTTNAEAL 577 Query: 269 NITQLAKDLILNRLASSGSAILK----LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCV 324 + + +K + L AV +DGR+ T Q A+ TGR S Sbjct: 578 VELYEKTQHPFLQHLLAHRDKIKMRQIVEGLISAVGADGRIHTTFQQTVAA-TGRLSSTE 636 Query: 325 FQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAG 383 QN+P +T + + +R + G L+ AD + Sbjct: 637 PNLQNIP---------ARTAEGMR---------------IRGAFVPGTGFDYLLTADYSQ 672 Query: 384 IEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ- 442 IE R++A ++ ++ I+AF +GED++ T A F P+++V+ R+ K L Y Sbjct: 673 IEMRLMAHMSKDEALIEAFKSGEDLHRTMAAMVFAVPVEEVTPALRSQIKATSYGLAYGL 732 Query: 443 ---GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLW--------------- 484 G ++ +++ + F E+ Sbjct: 733 SSYGLSQQLGISVPEARKLKEKYFERFGGVGRFLGEVVEEARERGFTATMMGRRRYLPDL 792 Query: 485 ------MQDQYPEFAVKDKLIGTACELVKKAW 510 ++ A+ + GTA +++K A Sbjct: 793 NSGNTNLRAMAERAALNAPIQGTAADIIKLAM 824 >gi|314980950|gb|EFT25044.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA3] gi|315091681|gb|EFT63657.1| DNA-directed DNA polymerase [Propionibacterium acnes HL110PA4] Length = 892 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 89/557 (15%), Positives = 165/557 (29%), Gaps = 107/557 (19%) Query: 43 KLW-DRTEQSAMPSDLLQY-LRDETVMCVAHNSLFERILFKKTLGIDIPSKRW-----IC 95 +W D E S D+ L D+ H++ K + + W C Sbjct: 359 AVWFDAAELSPEDEDVFAAWLADKDRPKAMHSA--------KGPVEALAERGWEVAGLTC 410 Query: 96 TSVLARTNGLPSSL-----KNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRA 150 + LA P LN + + +A++ F + Sbjct: 411 DTELASYLLHPDRRAHKFDDAVRTHLNVALGEVEDNSDQAMLD-FGEDHFAESMERAVAV 469 Query: 151 NHVQAWQLFGEYCKRDV-EATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKL 209 + DV E E L D E + ++ G D+D+ L Sbjct: 470 TRLA-----------DVMEKEVEARGGSELLHDVEMGVQRCLISMERAGIAADMDIFEGL 518 Query: 210 QELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLK------- 262 + + + +E + I S L+ LF + ++ Sbjct: 519 RSEFDERVTRAEEAAWEAAGEKINLS-SPKQLQGVLFDKLDMPKTRRTKSGYTTDADALA 577 Query: 263 ---SILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 H + L + +L + ++ L + + DGR+ T + TGR Sbjct: 578 GLYETTEHPFLAHLLEHRDAIKLRQT------VDGLLKEIRDDGRVHTTY-MQTVAVTGR 630 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVV 378 S QN+P + +R + G + L+ Sbjct: 631 LSSKDPNLQNIPMRT------------------------EEGRRIREGFVVGEGYESLLS 666 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + IE R++A ++G+ I AF +G+D + T + F + VS QR+ K M Sbjct: 667 ADYSQIEMRIMAHVSGDQSLIDAFQSGQDFHTVTASHVFGVAPEDVSVAQRSKIKAMNYG 726 Query: 439 LGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHL----------- 483 L Y G + K + + + + ++ Sbjct: 727 LAYGLSAYGLSNQLKVSVGEAKELMADYFSRFGKVHEYLEEVVDQARRQGYTETLLGRRR 786 Query: 484 ----------WMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG------VLQLWKDLTEG 527 +D A+ + G+A +L+K A A Q ++ + + Sbjct: 787 YLPDLTSTNRQRRDMAERAALNAPIQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDE 846 Query: 528 FACVVQEGGSISARRVA 544 V +G R + Sbjct: 847 LILEVAKGEEEKVREIV 863 Score = 41.3 bits (95), Expect = 0.53, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 6/53 (11%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGTLC 648 +Q + D++ M + ++L VHDE++ E V + Sbjct: 811 IQGSAADLIKLAMLATDQKLAEAALTSRVLLQVHDELILEVAKGEEEKVREIV 863 >gi|187918411|ref|YP_001883974.1| DNA polymerase I [Borrelia hermsii DAH] gi|119861259|gb|AAX17054.1| DNA polymerase I [Borrelia hermsii DAH] Length = 905 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 82/547 (14%), Positives = 177/547 (32%), Gaps = 91/547 (16%) Query: 5 FIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDR-------TEQSAMPSDL 57 ID ET S V+ +A I + ++ + E+ + Sbjct: 340 SIDTETTSTN------VY----EAQILGISVSFKEFESYYIPIETKEKKSIEREYITQKF 389 Query: 58 LQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALN 117 ++ + + N F+ +F + IP + T + A + + L+ Sbjct: 390 NEFFK-TKPKLIGQNYKFDYKIFTRHGFNAIPP--YFDTMIAAYVIDPNTKVSLDFLSEK 446 Query: 118 FSEHL-TKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR 176 + H K +E + +++ + ++LF + K+ E E Sbjct: 447 YLMHKNIKYQEIVSQNGTLKDIPLETVSNYAAEDADI-TFRLFKIFAKKLKEDNLESL-- 503 Query: 177 LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSR 236 + D E + + + G +D D + + + + +E K ++ +I++ + GI + Sbjct: 504 ---MIDVEMPFSNVITEMEENGIYLDKDYLRQYSQELTKELKLIENEIIQ-SIGIKFNLN 559 Query: 237 QTYALRMYLFLITGIDLVDMSEGTLKSIL-------SHSNITQLAKDLILNRLASSGSAI 289 + L LF + L + SI H +I ++ + +++L ++ + Sbjct: 560 SSKQLYRVLFDELKLVLPPNVKKHSTSIKVLEAIKDQHESIPKIIQYRKISKLKNTYT-- 617 Query: 290 LKLNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + L + ++ ++ A+ TGR QN+P Sbjct: 618 ---DNLIKFINAKTNKIHTNFIQAKAA-TGRILSTAPNLQNIP----------------- 656 Query: 349 RGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R G + AD + IE +LA + + I+AF N EDI Sbjct: 657 -------IKDEKGRKIREAFKPKEGNLFISADYSQIELVILAHFSEDGALIEAFKNKEDI 709 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQ 464 ++ T ++ F DKV+ R + K + + Y A + + + Sbjct: 710 HIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQELSIKREEAQKFIDSYFN 769 Query: 465 NVKSTSTFEDWEQAESHHLWM---------------------QDQYPEFAVKDKLIGTAC 503 F + + A+ + G+A Sbjct: 770 LYSKIKIFIQNRIDFARKNGYSETLLKRRRYIKEINSQNHSERSGAERIAINSTIQGSAS 829 Query: 504 ELVKKAW 510 +++K A Sbjct: 830 DIMKIAM 836 Score = 45.9 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 31/176 (17%), Positives = 58/176 (32%), Gaps = 16/176 (9%) Query: 495 KDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG--------SISARRVANV 546 +D I TA +L K + ++ K + G + G A++ + Sbjct: 707 EDIHIKTASQLFKVDTDKVTPSMRRVAKSINFGIIYNMSAHGLSQELSIKREEAQKFIDS 766 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG--KLTENIVQA 604 + + K + + +R+ YS+ + G + +Q Sbjct: 767 YFNLYSKIKIFIQNRIDFARKNGYSETLLKRRRYIKEINSQNHSERSGAERIAINSTIQG 826 Query: 605 ISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLMTKN 654 + DI+ M I+L VHDEI+ E+P T+ M +N Sbjct: 827 SASDIMKIAMVRVYNEFKSKNLKSKILLQVHDEILIESPKQECEEAKTIIKEMMEN 882 >gi|288817697|ref|YP_003432044.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|288787096|dbj|BAI68843.1| DNA polymerase I [Hydrogenobacter thermophilus TK-6] gi|308751295|gb|ADO44778.1| DNA-directed DNA polymerase [Hydrogenobacter thermophilus TK-6] Length = 576 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 108/542 (19%), Positives = 189/542 (34%), Gaps = 98/542 (18%) Query: 2 SKLFIDIETRSP-QPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTE-QSAMPSDLLQ 59 S LF+D ET S L ++G ++E V + D E S L Sbjct: 23 SYLFLDTETVSEKIRLVQLG-----------------NNEDVFIVDLFETGSYGVDFLKD 65 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNG-LPSSLKNACLALNF 118 L D+ + V HN ++ K I T + ++ G L Sbjct: 66 LLVDKGI--VGHNLKYD---LKFLYRYGIEPYAVFDTMIASQLLGELDRHSLQKVAMHYL 120 Query: 119 SEHLTKMEEGKALIA-RFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK-- 175 E L K + K ++ D + + + + L K Sbjct: 121 GEVLDKSLQMSNWGRAVLSKEQLEYAALDVKMVRDL--YSILLDKLNSTAHQEETLLKTR 178 Query: 176 --RLI----PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 R+ P++ E + G +D + +L++LI + +K L++ +++ Sbjct: 179 TSRVFGLKNPVAIIEMAFVQEVAKLELNGIGVD---IKELEDLIREYKKNLNKKVMEFMM 235 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSEG---TLKSILSHSNITQLAKDLILNRLASSG 286 L L G+DL +G T ILS + + ++ R + Sbjct: 236 HYRIDPLSPKQLGELLSKRLGLDLPKTEKGNISTDDKILSQFIHHKPVQMILEIR--MTK 293 Query: 287 SAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQA 346 + KL+ + V DG + + GA TGR S QN+PR Sbjct: 294 KLLDKLDEIRSFV-KDGSVYPEFKQIGAI-TGRMSSLNPNVQNIPRD------------- 338 Query: 347 LNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGE 406 +R A GK LV++D + IE R+ + G++ IKAF G+ Sbjct: 339 -----------------LRGVFKAREGKVLVISDFSQIELRIASEYVGDERMIKAFREGK 381 Query: 407 DIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLD-------- 458 D++ T + + +SKE+R + K + L Y A+ A G+D Sbjct: 382 DLHRYTASVLLGKKEEDISKEERQLAKAVNFGLIYGISARGLSDYAKSYGIDLSVDDAQK 441 Query: 459 -LQQFSQNVKSTSTFEDWEQAESHHL------------WMQDQYPEFAVKDKLIGTACEL 505 +F + +S + + + E L ++ +P+ AV + GT +L Sbjct: 442 IRDRFFEYFRSFKEWHERVKRELKQLGGSRGYTLLGRSYVAHTFPD-AVNYPIQGTGADL 500 Query: 506 VK 507 +K Sbjct: 501 LK 502 >gi|119953333|ref|YP_945542.1| DNA polymerase I [Borrelia turicatae 91E135] gi|119862104|gb|AAX17872.1| DNA polymerase I [Borrelia turicatae 91E135] Length = 919 Score = 198 bits (503), Expect = 2e-48, Method: Composition-based stats. Identities = 81/487 (16%), Positives = 158/487 (32%), Gaps = 91/487 (18%) Query: 69 VAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEG 128 + N F+ + KK IP + T + A + + LA + H Sbjct: 414 IGQNYKFDYKILKKHEFNVIPP--YFDTMIAAYVIDPNTKVSLDFLAEKYLMHKN----- 466 Query: 129 KALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIP--------- 179 I + + T + ++ Y D + T LFK Sbjct: 467 ---IRY-----EEIVAQNGTLKDIPL--EMVSNYAAEDADITFRLFKIFTKKLKEDNLEN 516 Query: 180 -LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQT 238 ++D E + + + G +D D + + + +E K ++ +I+K + T Sbjct: 517 LMTDIEMPFSNVITEMEENGIYLDKDYLRQYGYELDKELKLIENEIIKSIGIEF-NLNST 575 Query: 239 YALRMYLFLITGIDLVD--MSEGTLKSILS-----HSNITQLAKDLILNRLASSGSAILK 291 L LF + L + T +L H +I +L + + +L ++ + Sbjct: 576 KQLHTVLFERLNLVLPQNVKQDSTDIKVLETIKEQHESIPKLIQYRQIAKLKNTYT---- 631 Query: 292 LNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRG 350 + L E V+ ++ + TGR S QN+P Sbjct: 632 -DNLIEFVNEKTNKIHTNF-IQTKTATGRISSTSPNLQNIP------------------- 670 Query: 351 ETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYV 410 +R G + AD + IE +LA ++ ++ I+AF N +DI++ Sbjct: 671 -----IKDEKGRKIREAFKPEKGNIFISADYSQIELVILAHLSEDESLIEAFKNKKDIHI 725 Query: 411 TTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA----KVFKTMASHCGLDLQQFSQNV 466 T ++ F +KV+ R I K + + Y+ A K + + Sbjct: 726 KTASQLFKVDEEKVTSSMRRIAKSINFGIIYRMSAFRLSKELSIKREEAQKFIDSYFNLY 785 Query: 467 KSTSTF---------------------EDWEQAESHHLWMQDQYPEFAVKDKLIGTACEL 505 TF ++ S + + A+ + G+A ++ Sbjct: 786 SKIKTFIQNQIDFVRKNGYSETLLKRRRYIKEINSQNYSERSGAERIAINSTIQGSASDI 845 Query: 506 VKKAWRA 512 +K A Sbjct: 846 MKIAMIK 852 Score = 44.0 bits (102), Expect = 0.079, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 598 TENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 + +Q + DI+ M I+L VHDE++ E+P+ V + M Sbjct: 834 INSTIQGSASDIMKIAMIKVYNELKSKNLKSKILLQVHDEMLIESPEQECEEVNKIIKTM 893 Query: 652 TKN 654 +N Sbjct: 894 MEN 896 >gi|225630667|ref|YP_002727458.1| DNA polymerase I [Wolbachia sp. wRi] gi|225592648|gb|ACN95667.1| DNA polymerase I [Wolbachia sp. wRi] Length = 858 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 87/517 (16%), Positives = 172/517 (33%), Gaps = 99/517 (19%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + + + + L V+ + HN R +F T + S + + G Sbjct: 342 DSIQDALI--TINSTLLSNGVLKIIHNIKEIRKIFPAT-EKMLDSVDDLMIMSYSLDTGK 398 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A N SE+ ++ K LIA + +LF Sbjct: 399 HDHSIPNIVAHNLSEN-AEIFSAKTLIA----------------IHEKLKQRLFQ----- 436 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E +++R ++ L + + G +++ + +L + Q L+++I Sbjct: 437 --EKLFTIYERF------DKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIY 488 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LIL 279 L + L LF G++ S+ + ++ + L ++ IL Sbjct: 489 NLAGERFNIA-SPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKIL 547 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N S + L + V DGR+ + + GR S QN+P + Sbjct: 548 NWRHLSKLKGTYTDALIKQVDPLDGRIHTSFSTTATAT-GRLSSSNPNLQNIPIRS---- 602 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + +R IA G K++ AD + IE R+LA +A Sbjct: 603 --------------------EEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 642 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AFAN +DI+ T + F ++ ++ R K + + Y G AK + Sbjct: 643 KEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 700 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493 + + + + + + +++ A Sbjct: 701 AAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQFAERAA 760 Query: 494 VKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524 + L GTA +++K+A + +LQ+ +L Sbjct: 761 INAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDEL 797 Score = 41.3 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 Q + DI+ I+L VHDE++ E D V LM Sbjct: 766 QGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEK---VQETAKLM 813 >gi|108805947|ref|YP_645884.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] gi|108767190|gb|ABG06072.1| DNA-directed DNA polymerase [Rubrobacter xylanophilus DSM 9941] Length = 582 Score = 198 bits (502), Expect = 3e-48, Method: Composition-based stats. Identities = 104/534 (19%), Positives = 178/534 (33%), Gaps = 107/534 (20%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 +DIE PL A + L A + D E + S L + L Sbjct: 32 LDIEATGLSPL----------DARMRLLQLAA-GGETFVVDVFEVKDL-SPLREALE-GG 78 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN-----GLPSSLKNACLALNFSE 120 + V HN+ ++ GI + T + A+ G SL+ E Sbjct: 79 PLKVLHNAKYDYSFLLAQHGIRLSPL--FDTMLAAQLLDGGEQGPSYSLEAVA-GRYLQE 135 Query: 121 HLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLI-- 178 + K + + + EY RD L +RL Sbjct: 136 TVDKTARREDWSKELSREQL--------------------EYAARDAAILLPLHERLQEL 175 Query: 179 -------PLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK----- 226 P+S E + G R+D+ +L+ ++ + R + + Sbjct: 176 LEREGLGPVSRIEFGAVPAIAEMELAGIRLDVRRWRELERVVRRRRDEAARRLESHFPQP 235 Query: 227 -----LTD-GIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILN 280 L G + + F GI+L D T L + A+DL+ Sbjct: 236 EGVLPLEGLGPRLNLNSPQQIME-AFRSIGIELPD----TRMWTLLTVDHPA-ARDLLEY 289 Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339 R L T V GR+ + TGR + Q +P Sbjct: 290 R-ELQKKLGTYLETYEGFVHPKTGRIHASFLQCRVP-TGRLACTNPNVQQIPH------- 340 Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399 D R C +A G LV+AD + IE R+LA ++G+ + Sbjct: 341 ---------------------EDEFRRCFVAGEGNVLVIADYSQIELRILAEVSGDPGFV 379 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459 +AF GED++ T A F P ++V+KEQR+ K + L Y G +++A+ G D Sbjct: 380 EAFRRGEDLHRVTAATMFGVPKEEVTKEQRSAAKRINFGLAYGRG---PRSLAAQLGTDE 436 Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAK 513 ++ + + +++ ++ A+K+ + T ++K R + Sbjct: 437 ERARRLI------DEYFATYGRVQRYLNETANRALKEGALRTLSGRLRKFGRTR 484 >gi|325674214|ref|ZP_08153903.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] gi|325554894|gb|EGD24567.1| DNA-directed DNA polymerase I [Rhodococcus equi ATCC 33707] Length = 912 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 77/421 (18%), Positives = 139/421 (33%), Gaps = 78/421 (18%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ + L+D E L + + G +D + LQ A + E Sbjct: 496 LDTELADIEATGLLADMELPLLEVLANLESTGIAVDTTHLHDLQSAFAARVAEAAEAAYA 555 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKD 276 + I + L++ LF + L+S+ H + L + Sbjct: 556 VIGKQI-NLGSPKQLQVVLFDELDMPKTKKTKTGYTTDADALQSLFEKTQHPFLEHLLEH 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 RL + ++ L + V+ DGR+ T A+ TGR S QN+P + Sbjct: 615 RDATRLKVT------VDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-- 665 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395 A +R + G L+ AD + IE R++A ++G+ Sbjct: 666 ----------------------DAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHLSGD 703 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF GED++ ++AF PI++V+ E R K M L Y G A K Sbjct: 704 AGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKIS 763 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 + + + ++ + ++ Sbjct: 764 TEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRREVAE 823 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540 A+ + GTA +++K A + +LQ+ +L A +E Sbjct: 824 RAALNAPIQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLV 883 Query: 541 R 541 R Sbjct: 884 R 884 >gi|312139906|ref|YP_004007242.1| DNA polymerase i pola1 [Rhodococcus equi 103S] gi|311889245|emb|CBH48559.1| DNA polymerase I PolA1 [Rhodococcus equi 103S] Length = 912 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 77/421 (18%), Positives = 139/421 (33%), Gaps = 78/421 (18%) Query: 167 VEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVK 226 ++ + L+D E L + + G +D + LQ A + E Sbjct: 496 LDTELADIEATGLLADMELPLLEVLANLESTGIAVDTTHLHDLQSAFAARVAEAAEAAYA 555 Query: 227 LTDGIIRSSRQTYALRMYLFLITGIDLVDM-------SEGTLKSI---LSHSNITQLAKD 276 + I + L++ LF + L+S+ H + L + Sbjct: 556 VIGKQI-NLGSPKQLQVVLFDELDMPKTKKTKTGYTTDADALQSLFEKTQHPFLEHLLEH 614 Query: 277 LILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 RL + ++ L + V+ DGR+ T A+ TGR S QN+P + Sbjct: 615 RDATRLKVT------VDGLLKTVAEDGRIHTTFNQTVAA-TGRLSSTEPNLQNIPVRT-- 665 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGK-KLVVADLAGIEARVLAWIAGE 395 A +R + G L+ AD + IE R++A ++G+ Sbjct: 666 ----------------------DAGRQIRDGFVVGEGYETLLTADYSQIEMRIMAHLSGD 703 Query: 396 DWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTM 451 I+AF GED++ ++AF PI++V+ E R K M L Y G A K Sbjct: 704 AGLIEAFITGEDLHSFVGSRAFGVPIEEVTPELRRRVKAMSYGLAYGLSAFGLAAQLKIS 763 Query: 452 ASHCGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYP 490 + + + ++ + ++ Sbjct: 764 TEEARQQMDAYFARFGGVRDYLHEVVEQARKVGYTETLFGRRRYLPDLNSDNRQRREVAE 823 Query: 491 EFAVKDKLIGTACELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISA 540 A+ + GTA +++K A + +LQ+ +L A +E Sbjct: 824 RAALNAPIQGTAADIIKVAMIDVQRALREAGLASRMLLQVHDELVLEVAAGERERVEQLV 883 Query: 541 R 541 R Sbjct: 884 R 884 >gi|89897107|ref|YP_520594.1| hypothetical protein DSY4361 [Desulfitobacterium hafniense Y51] gi|89336555|dbj|BAE86150.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 578 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 98/555 (17%), Positives = 178/555 (32%), Gaps = 115/555 (20%) Query: 2 SKLFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYL 61 + +D ET + L A +D PV + D +L+ + Sbjct: 23 KVIAVDTETT-GLDPHTC---------QLRLIQLAAEDLPVLVIDCFSFLPEGRELINAI 72 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN---GLPSSLKNACLA-LN 117 + + + N+ F+ + +DI T + ++ G P LA Sbjct: 73 LSTSGIKIFQNAKFDLQFL---MALDIFPPTLFDTMLASQLLRGSGGPVQSNLKALAQHY 129 Query: 118 FSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRL 177 +E L K E+ + + Y RD E L K + Sbjct: 130 LNEDLDKEEQTSNWQG--------------------ELTESQILYAARDAEILLRLRKVM 169 Query: 178 IP---------LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLT 228 IP ++ E + RG +D +L E ERK +++ Sbjct: 170 IPQILENHLTQIAGIEFRCVKAMAHLEYRGIYLDRQKWQELYEKTEAERKTALDELYTYV 229 Query: 229 DGII-------------RSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAK 275 + + ++ + L GI + ++ L H + Sbjct: 230 ERPLMQMSLWGEDVAINQNFESQQFVLNVLHE-HGIPVAATAKQDLYPYRRHPLV----- 283 Query: 276 DLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQE 334 +L+ ++ S L + + GRL A +GR S Q +PR Sbjct: 284 KTLLSYRKAAKSISAFLQPFTPLIHPVTGRLHPRYGQISA-WSGRMSCWNPNIQQIPRDS 342 Query: 335 RSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAG 394 R+C A G+KL++AD + IE RV A I+G Sbjct: 343 E----------------------------FRACFAAPPGRKLILADYSQIELRVAAQISG 374 Query: 395 EDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASH 454 + I A+ GED+++ T + + PI +++ ++R K + L + GA + A Sbjct: 375 DTRMISAYQQGEDLHLLTASLVAHKPIAEITPQERQAAKAVNFGLIFGMGAPGLQQYAQQ 434 Query: 455 -CGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFA-------------------V 494 G+++ F+ + H ++ P+ Sbjct: 435 NYGVEMSLEQATEFRERFFKAYTGIHRWHQSIKAHLPKEGRTLAGRKFVYYEKAGLPGYY 494 Query: 495 KDKLIGTACELVKKA 509 + GTA ++VKKA Sbjct: 495 NTPVQGTAADIVKKA 509 >gi|154487485|ref|ZP_02028892.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] gi|154084003|gb|EDN83048.1| hypothetical protein BIFADO_01339 [Bifidobacterium adolescentis L2-32] Length = 895 Score = 198 bits (502), Expect = 4e-48, Method: Composition-based stats. Identities = 69/409 (16%), Positives = 151/409 (36%), Gaps = 73/409 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E + + + G ++D+ ++++++ +A + + E + + + + Sbjct: 485 LKSIELPVSQVLHGMEQVGAQVDMTRLVQMRDQLAADAAQAQETAWQFAGEQV-NLQSPK 543 Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+++ S A + L LK Sbjct: 544 QLQKILFEDMGLKPTKKTKSGSYTTNAAALQTLRDRSYDNDRACQFLDALLMHREKNKLK 603 Query: 292 --LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + TL +A + DGR+ T + A+ TGR S QN+P + Sbjct: 604 QIVQTLIDATNRHDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 647 Query: 349 RGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 A +RS + G + L+ +D + +E R++A ++G++ I+AF +G+D Sbjct: 648 ---------DPAGREIRSAFVPGEGFESLLSSDYSQVELRIMADLSGDEALIEAFRSGKD 698 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+D ++ +QR+ K M L Y G A+ K Q+ Sbjct: 699 FHKYVASLVYGIPVDDITSDQRSHVKAMSYGLAYGLSTYGLAQQLKIKPKEAESLKNQYF 758 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + +S + ++D A+ + G+A Sbjct: 759 ATFGKVHEYLESLVSSAREKGYTETIFGRRRYFPGLKSPNRAVRDAAERAALNAPIQGSA 818 Query: 503 CELVKKAWRAKHQG----------VLQLWKDLTEGFACVVQEGGSISAR 541 +++K A + +LQ+ +L A ++ + + Sbjct: 819 ADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVK 867 Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSE-TPDTPYFSVGTLCSLM 651 +Q + DI+ M A G ++L +HDE+V E P + + M Sbjct: 814 IQGSAADIMKIAMIRAYDALQEANLGSRLILQIHDELVVEIAPGEEKQATALVKDAM 870 >gi|269120628|ref|YP_003308805.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] gi|268614506|gb|ACZ08874.1| DNA polymerase I [Sebaldella termitidis ATCC 33386] Length = 885 Score = 197 bits (501), Expect = 4e-48, Method: Composition-based stats. Identities = 65/367 (17%), Positives = 130/367 (35%), Gaps = 58/367 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + E+ L + + +G ID D K + +++++I L + Sbjct: 483 YENIEKKLVPVLADMEKKGILIDPDYFGKYGNELKNNLAEIEKNIYGLAGEEF-NINSPK 541 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNI-----TQLAKDLILNRLASSGSAILKLNT 294 L LF +D V ++ + + + ++A+ ++ R + + Sbjct: 542 QLSEILFEKMMLDPVKKTKTGYSTDVEVLEVLAAQGVEVAEKILEYR-GYTKLLTTYVEP 600 Query: 295 LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIA 354 L + S+ R+ T G + TGR S QN+P Sbjct: 601 LPKLADSENRIHTTFHQNG-TATGRLSSSNPNIQNIP----------------------- 636 Query: 355 DPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 +R ++ G + D + IE RVLA ++ ++ I A+ +D++ T Sbjct: 637 -VKTDEGIKIRRGFVSEEGWSFISFDYSQIELRVLAELSEDETLILAYQKDKDLHDLTAR 695 Query: 415 KAFNTPIDK-VSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKST 469 K F ++ VS+E+R+I KV+ ++ Y G +K K L + ++ + Sbjct: 696 KLFFKTDEEPVSREERSIAKVINFSILYGKTPFGLSKELKIPMGDAKLYINKYFEEYPRV 755 Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 TF + S + ++ Q AV + GTA ++K Sbjct: 756 RTFLNSVLQEAKLNGFVETLYGTRRYITGINSSNKNIEAQADRMAVNTVVQGTAANIIKI 815 Query: 509 AWRAKHQ 515 ++ Sbjct: 816 VMVKLYE 822 Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 598 TENIVQAISRDILCEGMKNA-----TKNGYDIVLTVHDEIVSETPDTPYFS-VGTLCSLM 651 +VQ + +I+ M K +++L VHDE++ E + + + ++M Sbjct: 801 VNTVVQGTAANIIKIVMVKLYEEFKDKEDINMLLQVHDELIFEVKNESVDKYLKEIDNIM 860 Query: 652 TKNP 655 Sbjct: 861 ENTI 864 >gi|220912558|ref|YP_002487867.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] gi|219859436|gb|ACL39778.1| DNA polymerase I [Arthrobacter chlorophenolicus A6] Length = 894 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 67/380 (17%), Positives = 140/380 (36%), Gaps = 56/380 (14%) Query: 165 RDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224 R E + + LS E + + + G IDLD + + +A+ + E Sbjct: 476 RFFETELKERRAEELLSTLELPVSRVLADMELAGIGIDLDRMDEQLADLARVIDQAQEQA 535 Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEG--TLKSILSHSNITQLAKDLILNRL 282 + + L+ LF + + T + + + + + ++ + Sbjct: 536 FAAIGHEV-NLGSPKQLQTVLFEELQLPKTKKIKSGYTTDAASLKNLLEKTGHEFLVQLM 594 Query: 283 ASSGSAILK--LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 A +A L+ + +L ++V+ DGR+ T A+ TGR S QN+P + Sbjct: 595 AHREAAKLRQMIESLKKSVAEDGRIHTTYAQNVAA-TGRISSNNPNLQNIPIRS------ 647 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKI 399 VR + S+G + L+ AD + IE R++A ++G+ I Sbjct: 648 ------------------EEGRRVRGIFVVSDGYECLLSADYSQIEMRIMAHLSGDAGLI 689 Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHC 455 +A+ +GED++ + F+ P D+V+ R+ K M L Y G +K + Sbjct: 690 QAYKDGEDLHRFVGSNIFHVPTDQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEA 749 Query: 456 GLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAV 494 ++ + + + ++ +++ A+ Sbjct: 750 RTLMKDYFDRFGAVRDYLRGVVDQARVDGYTSTIEGRRRYLPDLTSTDRQLRENAERIAL 809 Query: 495 KDKLIGTACELVKKAWRAKH 514 + G+A +++K+A H Sbjct: 810 NSPIQGSAADIIKRAMLGVH 829 Score = 45.5 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 56/161 (34%), Gaps = 10/161 (6%) Query: 504 ELVKKAWRAKHQGVLQ-LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVL 562 + V A R+K + + L LT E AR + + + V+ Sbjct: 712 DQVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKDYFDRFGAVRDYLRGVV 771 Query: 563 PSSRRLVYSD-VKGDCSYLNTATSQLMRERTYGGKLTENI-VQAISRDILCEGMKNATKN 620 +R Y+ ++G YL TS + R ++ N +Q + DI+ M Sbjct: 772 DQARVDGYTSTIEGRRRYLPDLTSTDRQLRENAERIALNSPIQGSAADIIKRAMLGVHAE 831 Query: 621 ------GYDIVLTVHDEIVSETPDTPYFSVGTLC-SLMTKN 654 ++L VHDE+V E +V L M Sbjct: 832 LQAQGLKSRMLLQVHDELVLEVAPGERAAVEALVTEQMAAA 872 >gi|269218430|ref|ZP_06162284.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] gi|269211541|gb|EEZ77881.1| DNA polymerase I [Actinomyces sp. oral taxon 848 str. F0332] Length = 882 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 75/411 (18%), Positives = 137/411 (33%), Gaps = 75/411 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L D E + + D G +D L+ +L++ G + S Sbjct: 472 LLDLEMAVSRTLGEMEDAGIAVDEGLLEQLRQDFDGRVFAAARSAYDAIGGEVNLS-SPK 530 Query: 240 ALRMYLFLITGIDLVDMSEGT-----------LKSILSHSNITQLAKDLILNRLASSGSA 288 L+ LF G+ + SI + LA L L A Sbjct: 531 QLQEVLFDQLGLPPTRKMKSGHTTNADALANLAVSIAGREDDKALAGQQFLASLLEHRDA 590 Query: 289 ILKLNT---LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQ 345 I + L +V DGR+ T Q A+ TGR S QN+ Sbjct: 591 IKLRQSVVGLQRSV-RDGRIHTTFQ-QTAAATGRLSSTDPNLQNI--------------- 633 Query: 346 ALNRGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFAN 404 +R+ + G + ++ AD + IE R++A ++G+ I+AF Sbjct: 634 ---------HARTAEGRSIRAAFVPGEGYESIMTADYSQIEMRLMAALSGDVELIEAFRE 684 Query: 405 GEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQ 460 G D++ ++ + P +KV+ + R+ K M L Y G +K + + + Sbjct: 685 GADLHTYVASRVYGVPEEKVTADDRSHIKAMSYGLAYGLSAYGLSKQLRISVAQAQALMD 744 Query: 461 QFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLI 499 + T+ D E+ + ++ A+ + Sbjct: 745 DYFSRFGRVRTYLDSLVQEARKEGYTQTILGRRRYLPDLNSTNRQAREAAERMALNAPIQ 804 Query: 500 GTACELVKKAWRA--------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 G+A +++K A A + + +LQ+ +L A ++ RR Sbjct: 805 GSAADVIKLAMVAVVDSMKEMRSRVLLQVHDELVLEIAPGERDAVEAVVRR 855 >gi|126658688|ref|ZP_01729833.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] gi|126619950|gb|EAZ90674.1| hypothetical protein CY0110_32040 [Cyanothece sp. CCY0110] Length = 662 Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats. Identities = 112/559 (20%), Positives = 187/559 (33%), Gaps = 100/559 (17%) Query: 6 IDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDLLQYLRDET 65 +DIET P + I+L A + PV L + + L +++ Sbjct: 71 LDIETTGLDPHT----------SEISLIQIAAPNRPVILIEFRSITHK-ESLRRFIEHHK 119 Query: 66 VMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTN--GLPSSLKNACLA--LNFSEH 121 + V HN FE K LGI+ WI T ++A+ GLP +L++ A L Sbjct: 120 IPKVGHNLAFEIQFLTKHLGINPVKTAWIDTMLMAQLLAAGLPPTLEDDIKAGVLPIPNL 179 Query: 122 LTKMEEGKALIA----------RFCKGSIDSPPYDCTRANHVQAW-----QLFGEYCKRD 166 ++ K L + + Y ++ V W Q +Y D Sbjct: 180 NQSIKNKKKLKQELNRNLPGSYSLMRVAARELGYSLDKSLQVSDWGKPLTQEQLQYAAND 239 Query: 167 VEATRE---------LFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQER 217 + +L E + G +DLD +L + I R Sbjct: 240 AAVVLPLRDTFRSKIIENQLADAIQVELGALARVAQMGLMGMGLDLDRWGELAKEIETRR 299 Query: 218 KKLDEDIVK----------LTDGIIR-SSRQTYALRMYLFLITGIDLVDMSEGTLKSILS 266 + + + L G + + L GI S+ TL + Sbjct: 300 EDAAKIACEVLKPDHAQLNLFGGEASINLDSNEQVIAAL-ARLGIHTNSTSKDTLDKLSE 358 Query: 267 HSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVF 325 + +I R S + L V+ R+ + A+ +GR+S Sbjct: 359 NH---PEVFTIIEYR-HWSKAHSSFGEKLPTFVNPVTHRIHPNVNQMRAA-SGRFSFSNP 413 Query: 326 QPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIE 385 Q +PR RSC + ++G KL++AD + IE Sbjct: 414 NLQQIPR----------------------------ERQYRSCFVPASGYKLIIADYSQIE 445 Query: 386 ARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 R+ A IA + I A+ N +D++ T A P+D+V+K++R +GK + L Y GA Sbjct: 446 LRIAAEIANDSVMIDAYCNEKDLHRLTAALVSGKPLDEVTKQERQLGKAVNFGLIYGMGA 505 Query: 446 KVFKTMAS-HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACE 504 + A + G+ + + F+ + H + VKD Sbjct: 506 TKLRIYAETNYGVKMSIEEAQRFRDNFFKGYPGLHQWHQDTAFKLRTTKVKD-------- 557 Query: 505 LVKKAWRAKHQGVLQLWKD 523 G L+ WKD Sbjct: 558 ------IRTLSGRLRRWKD 570 >gi|58696948|ref|ZP_00372442.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] gi|58536818|gb|EAL60040.1| DNA polymerase I [Wolbachia endosymbiont of Drosophila simulans] Length = 817 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 89/517 (17%), Positives = 174/517 (33%), Gaps = 99/517 (19%) Query: 46 DRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL 105 D + + + + L V+ + HN R +F T + S + + G Sbjct: 301 DSIQDALI--TINSTLLSNGVLKIIHNIKEIRKIFPAT-EKMLDSVDDLMIMSYSLDTGK 357 Query: 106 PSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKR 165 +A N SE+ ++ K LIA + +LF Sbjct: 358 HDHSIPNIVAHNLSEN-AEIFSAKTLIA----------------IHEKLKQRLFQ----- 395 Query: 166 DVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E +++R ++ L + + G +++ + +L + Q L+++I Sbjct: 396 --EKLFTIYERF------DKPLMKVIFDMEKNGILLNIQKLQELSDKFQQVIAVLEDEIY 447 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKD------LIL 279 L + L LF G++ S+ + ++ + L ++ IL Sbjct: 448 NLAGERFNIA-SPKQLSDVLFNKMGLNKKKKSKKSGSYSTNYEVLEALEEEGVEIASKIL 506 Query: 280 NRLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 N S + L + V DGR+ + A+ TGR S QN+P + Sbjct: 507 NWRHLSKLKGTYTDALIKQVDPLDGRIHTS-FSTTATATGRLSSSNPNLQNIPIRS---- 561 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 + +R IA G K++ AD + IE R+LA +A Sbjct: 562 --------------------EEGNLIRQAFIAPKGHKIISADYSQIELRLLAHVANVAAF 601 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASH 454 +AFAN +DI+ T + F ++ ++ R K + + Y G AK + Sbjct: 602 KEAFANEQDIHDITARQVFGV--QEIDEQLRRKAKSINFGIIYGISPFGLAKRLGITIAE 659 Query: 455 CGLDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFA 493 + + + + + + +++ A Sbjct: 660 AAEYINYYFSCYPEIKVYMEKAVSIARLHGYVETLFGRRCFVRDINNTIPYVRQFAERAA 719 Query: 494 VKDKLIGTACELVKKAWR------AKHQGVLQLWKDL 524 + L GTA +++K+A + +LQ+ +L Sbjct: 720 INAPLQGTAADIIKRATIQLFDQLKVGKIILQVHDEL 756 Score = 41.3 bits (95), Expect = 0.63, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Query: 603 QAISRDILCEGMKNA--TKNGYDIVLTVHDEIVSETPDTPYFSVGTLCSLM 651 Q + DI+ I+L VHDE++ E D V LM Sbjct: 725 QGTAADIIKRATIQLFDQLKVGKIILQVHDELLVEVEDEK---VQETAKLM 772 >gi|315604244|ref|ZP_07879310.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] gi|315313950|gb|EFU62001.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 180 str. F0310] Length = 896 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 90/514 (17%), Positives = 171/514 (33%), Gaps = 79/514 (15%) Query: 81 KKTLGIDIPSKRWI-----CTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARF 135 K + + S+ W ++LA P + + ++ E A F Sbjct: 385 AKGVRHALASRGWTLGEVAFDTMLAAYLAHPDQRSHKLTDVVARILGIEVSEAADEGALF 444 Query: 136 CKGSIDSPPYDCTRANHVQAWQL--FGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQT 193 + P A QL E +R T E K L LSD E L L Sbjct: 445 DMDESEEGPTGAEMRAGRIAAQLIPLAERLRR----TLEESKELGLLSDMEMPLARLLGD 500 Query: 194 INDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDL 253 + G +D ++ L + + +K + + S L+ LF + Sbjct: 501 MEATGIGVDTGVLSDLSAELGADVEKARRGAWEAAGREVNLS-SPKQLQELLFDHFALPK 559 Query: 254 VDMS-------EGTLKSILSHSNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSDG 303 + L + + + + A L L + I +++L V +D Sbjct: 560 TKKTKTGYTTNAEALADLWAKTEASGGAGHRFLGYLLAHRDRIKLKQMVDSLIATVGADE 619 Query: 304 RLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDC 363 R+ T A+ TGR + QN+P + Sbjct: 620 RIHTTFSQVAAA-TGRLASSDPNLQNIPARS------------------------PDGMR 654 Query: 364 VRSCIIASNGK-KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPID 422 +R G L+ AD + IE R++A ++G++ I+AF +GED++ T + F TP++ Sbjct: 655 IRGAFTPGPGYASLMSADYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVE 714 Query: 423 KVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQA 478 +VS E+R+ K L Y G A ++ + + + A Sbjct: 715 QVSGEERSRIKATSYGLAYGLSSYGLAAQLGIAVPEAAALRDRYFERFGKVRDYLEGLVA 774 Query: 479 ESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKAWRA----- 512 ++ + ++ A+ + G+A ++VK A Sbjct: 775 QARADGYTETMFGRRRYLPDLRSSNRQRREMAERAALNAPIQGSAADIVKIAMMNVASAL 834 Query: 513 KHQGV-LQLWKDLTEGFACVVQEGGSISARRVAN 545 ++G+ +L + + + G + A ++ Sbjct: 835 ANEGLATRLLVQIHDELLLEIAPGEADVAEKLVR 868 >gi|224282847|ref|ZP_03646169.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313140006|ref|ZP_07802199.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] gi|313132516|gb|EFR50133.1| DNA polymerase I [Bifidobacterium bifidum NCIMB 41171] Length = 943 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 70/405 (17%), Positives = 146/405 (36%), Gaps = 73/405 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E + + + G +D + ++++ A + + E + + + + Sbjct: 533 LQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAIDARDAQETAWQFAGSRV-NLQSPK 591 Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+ + S + A + L + LK Sbjct: 592 QLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLK 651 Query: 292 --LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + +L +AV+ D GR+ T + A+ TGR S QN+P + Sbjct: 652 QIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 695 Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +RS + G + L+ +D + +E R++A ++G+D I+AF +G D Sbjct: 696 ---------NAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGAD 746 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+D ++ +QR K M L Y G A+ K Q+ Sbjct: 747 FHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGEADRLKSQYF 806 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + +S + ++D A+ + G+A Sbjct: 807 ATFGKVHEYLESLVAGAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGALNAPIQGSA 866 Query: 503 CELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537 +++K A + + + +LQ+ +L A E + Sbjct: 867 ADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEAEQVT 911 >gi|257125590|ref|YP_003163704.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] gi|257049529|gb|ACV38713.1| DNA polymerase I [Leptotrichia buccalis C-1013-b] Length = 1046 Score = 197 bits (500), Expect = 7e-48, Method: Composition-based stats. Identities = 69/368 (18%), Positives = 131/368 (35%), Gaps = 62/368 (16%) Query: 184 ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRM 243 E L + + + G +ID + Q + ++ L DI KL DG + L Sbjct: 642 ESRLIPVLAQMEETGIKIDKKYFSEFQNELEEKINMLQSDIYKLADGEF-NIDSPQQLGE 700 Query: 244 YLFLITGIDLVDMSE-------GTLKSILSHSNITQLAKDL---ILNRLASSGSAILKLN 293 LF I ++ L+ I ++ +T+ + + +L A + Sbjct: 701 VLFEKLQIPSGKKTKTGYSTNVEVLEMIANNRELTEDKRMIGKKLLEYRAYKKLLSTYIE 760 Query: 294 TLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 + + + R+ T G + TGR S QN+P + Sbjct: 761 PIPKLADKEERIHTTFNQNG-TSTGRLSSANPNLQNIPVRTDD----------------- 802 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 +R+ ++ G L+ D + IE RVLA ++ + ++A+ + +D++ T Sbjct: 803 -------GIRIRTGFVSKEGHSLISFDYSQIELRVLAELSKDRHLVQAYQDNQDLHNLTA 855 Query: 414 AKA-FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKS 468 K F T D++S+ +R+I KV+ ++ Y G +K + + + Sbjct: 856 RKIFFKTEEDEISRHERSIAKVINFSILYGKTPFGLSKELGITVQEASQYITTYFEEYPR 915 Query: 469 TSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVK 507 F D + + +Q Q AV + GTA ++K Sbjct: 916 VRKFLDIVTETAKLHGFVETFYGTRRYISGINATNKNVQAQAVRMAVNTVVQGTAANIIK 975 Query: 508 KAWRAKHQ 515 K H+ Sbjct: 976 KVMIELHE 983 >gi|311064149|ref|YP_003970874.1| DNA polymerase I [Bifidobacterium bifidum PRL2010] gi|310866468|gb|ADP35837.1| PolA DNA polymerase I [Bifidobacterium bifidum PRL2010] Length = 944 Score = 196 bits (499), Expect = 7e-48, Method: Composition-based stats. Identities = 69/397 (17%), Positives = 144/397 (36%), Gaps = 73/397 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E + + + G +D + ++++ A + + E + + + + Sbjct: 534 LQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRV-NLQSPK 592 Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+ + S + A + L + LK Sbjct: 593 QLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLK 652 Query: 292 --LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + +L +AV+ D GR+ T + A+ TGR S QN+P + Sbjct: 653 QIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 696 Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +RS + G + L+ +D + +E R++A ++G+D I+AF +G D Sbjct: 697 ---------NAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGAD 747 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+D ++ +QR K M L Y G A+ K Q+ Sbjct: 748 FHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGEADRLKSQYF 807 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + +S + ++D A+ + G+A Sbjct: 808 ATFGKVHEYLESLVAGAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGALNAPIQGSA 867 Query: 503 CELVKKAW----------RAKHQGVLQLWKDLTEGFA 529 +++K A + + + +LQ+ +L A Sbjct: 868 ADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIA 904 >gi|310287301|ref|YP_003938559.1| DNA polymerase I [Bifidobacterium bifidum S17] gi|309251237|gb|ADO52985.1| DNA polymerase I [Bifidobacterium bifidum S17] Length = 943 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 70/405 (17%), Positives = 146/405 (36%), Gaps = 73/405 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L E + + + G +D + ++++ A + + E + + + + Sbjct: 533 LQSIELPVSHVLFGMEQVGASVDFMRLTEMRDRFAVDARDAQETAWQFAGSRV-NLQSPK 591 Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+ + S + A + L + LK Sbjct: 592 QLQAVLFDDMGLKPTKKTKSGSYTTNASALQDLAVRSVGNERANGFLTALLRHRETNKLK 651 Query: 292 --LNTLSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + +L +AV+ D GR+ T + A+ TGR S QN+P + Sbjct: 652 QIVQSLIDAVNPDDGRIHTTFEQTVAA-TGRLSSVDPNLQNIPNR--------------- 695 Query: 349 RGETIADPLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 +RS + G + L+ +D + +E R++A ++G+D I+AF +G D Sbjct: 696 ---------NAEGREIRSAFVPGEGYESLLSSDYSQVELRIMADLSGDDALIEAFRSGAD 746 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+D ++ +QR K M L Y G A+ K Q+ Sbjct: 747 FHKYVASLVYGIPVDDITPDQRTHVKAMSYGLAYGLSTYGLAQQLKISPGEADRLKSQYF 806 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + +S + ++D A+ + G+A Sbjct: 807 ATFGKVHEYLESLVADAREKGYTETMFGRRRYFPGLQSPNRNIRDAAERGALNAPIQGSA 866 Query: 503 CELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGS 537 +++K A + + + +LQ+ +L A E + Sbjct: 867 ADIMKIAMIHASDALAKAKVRSRIILQIHDELVVEIAPGEAEQVT 911 >gi|255994188|ref|ZP_05427323.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] gi|255993856|gb|EEU03945.1| DNA polymerase I [Eubacterium saphenum ATCC 49989] Length = 918 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 57/401 (14%), Positives = 133/401 (33%), Gaps = 60/401 (14%) Query: 153 VQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 ++ +F Y K + + +++ + E L + ++ + G +D + + + Sbjct: 494 LETVNIFKVYDKLKSQIEEDDLQKVF--YEIEMPLVEVIASMENTGVWLDTEFLKTYEAE 551 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQ 272 ++ +L + I +L + L LF ++ ++ + + + Sbjct: 552 LSNIEAELLDKIYELAGFEF-NVNSPKQLGEVLFEKLNLEPKVKTKRGYSTNAE--VLQK 608 Query: 273 LAKDLILNRLASSGSAILKLNT-----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQP 327 L K + L + KLN+ +DG++R GAS TGR + Sbjct: 609 LRKTHPIIDLILEFRKVSKLNSTYVRGFMGFKGTDGKVRPEFLQIGAS-TGRMACINPAL 667 Query: 328 QNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEAR 387 Q +P +R A + V AD + IE R Sbjct: 668 QTIP------------------------VKTDMGKRIRKAFKAGKDRVFVSADYSQIELR 703 Query: 388 VLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG--- 444 +L ++ ++ I AF +GEDI+ VSK R+ K + + Y Sbjct: 704 ILGHVSCDEGLINAFKSGEDIHEAVAVNVLGAQKGAVSKAVRSKAKAINFGVIYGMSDFG 763 Query: 445 -AKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------WEQAESHH 482 + + + ++ ++ + + + + + Sbjct: 764 LSNELEISRKDAKKYIDEYFAKHRAVYEYMEAQKSIAKQTGAVRTETGRIRKIPEINAQN 823 Query: 483 LWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKD 523 + +++ A+ + G +++K A ++ + + D Sbjct: 824 IMVRNLGERLAMNSPIQGMGADIMKLAMNNVYRAIQKQGLD 864 Score = 42.8 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%) Query: 594 GGKLTENI-VQAISRDILCEGMKNATKN------GYDIVLTVHDEIVSETPDTPYFSVGT 646 G +L N +Q + DI+ M N + IVL +HDE+V + + V Sbjct: 830 GERLAMNSPIQGMGADIMKLAMNNVYRAIQKQGLDAKIVLQIHDELVIDASVSDGEKVKK 889 Query: 647 L 647 L Sbjct: 890 L 890 >gi|288575147|ref|ZP_06393504.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570888|gb|EFC92445.1| DNA polymerase I [Dethiosulfovibrio peptidovorans DSM 11002] Length = 854 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 79/399 (19%), Positives = 141/399 (35%), Gaps = 66/399 (16%) Query: 148 TRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVL 207 T + W+L + + +R L + L + L + ++ G +++ ++ Sbjct: 424 TEERAMALWRLRDDLSQ--TIESRGLSEVLY---GIDMPLVPVLVSMEKSGIKLEEPVLQ 478 Query: 208 KLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE-GTLKSILS 266 + + + +++ E+I I + + LF G+ V ++ G + Sbjct: 479 DVISDLKERLERIVEEITSAAGESI-NLNSPKQVGCLLFEKLGLPPVKKTKTGYSTDVTV 537 Query: 267 HSNITQLAK-------DLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGR 319 + +L + L+ +R S S+ L L +V DG +R T + + TGR Sbjct: 538 LEQLAELPEPHNAVPSMLLEHRALSKMSSGFAL-PLMSSVCGDGIIRSTFE-SDTTGTGR 595 Query: 320 WSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASN-GKKLVV 378 S QNLP G SD ++S +I G+ V Sbjct: 596 LSSRDPNLQNLP------------------------AYGEWSDRIKSSLIPREKGRCFVA 631 Query: 379 ADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELA 438 AD + +E RVLA I+GE F +G DI+ T + F V+KE R K++ Sbjct: 632 ADYSQVELRVLAHISGEKRLADIFRSGRDIHTETASMVFGVDSSMVTKELRRSAKMVTFG 691 Query: 439 LGYQGG----AKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAES-------------- 480 L Y AK S + ++ + + E+ Sbjct: 692 LLYGMSAFGLAKRLGVGRSEADRIMSRYFAALPGVEAYVTKSADEAIAKGYTETLFGRIR 751 Query: 481 -------HHLWMQDQYPEFAVKDKLIGTACELVKKAWRA 512 + + A+ + GTA +L KKA A Sbjct: 752 PLEEVVTGNTRDRGHIRRVAINSPIQGTAADLAKKAMIA 790 >gi|154508852|ref|ZP_02044494.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] gi|153798486|gb|EDN80906.1| hypothetical protein ACTODO_01362 [Actinomyces odontolyticus ATCC 17982] Length = 889 Score = 196 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 96/578 (16%), Positives = 182/578 (31%), Gaps = 88/578 (15%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 D + D E S + L + + + H++ R ++ Sbjct: 343 DNEALVIDPVELSPQQEEALGEVLATALSLIVHDAKGARHALS---SRGWTLGGVEFDTM 399 Query: 99 LARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAW 156 LA P S K + + + EEG + A F G + + P A Sbjct: 400 LAAYLAHPDQRSHKLEDVLSRVLGVVIEEEEGDSE-ALFDLGDMGAGPSAAQVRAGKLAA 458 Query: 157 QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQE 216 L L L+D E L +L + D G D ++ L + + + Sbjct: 459 HLHPLASTLRSRLEESSEAAL--LTDMEMPLSVLLGQMEDIGIAADTSVLDGLSDELGKA 516 Query: 217 RKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVD----------------MSEGT 260 E + S L+ LF G+ ++ + Sbjct: 517 VDAAREGAWAAAGREVNLS-SPKQLQELLFDHFGLPKTKKTKTGYTTNAEALADLHAKTS 575 Query: 261 LKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRW 320 + H + L +L +++LS V+SDGR+ T A+ TGR Sbjct: 576 DEGGAGHDFLGFLLTHRDRIKLKQM------VDSLSATVASDGRIHTTFSQVAAA-TGRL 628 Query: 321 SGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVA 379 + QN+P + +R +A G + L+ A Sbjct: 629 ASSDPNLQNIPARSAD------------------------GMRIRGAFVAGEGFESLMSA 664 Query: 380 DLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELAL 439 D + IE R++A ++G++ I+AF +GED++ T + F TP+ +VS E+R+ K L Sbjct: 665 DYSQIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGL 724 Query: 440 GYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH-------------- 481 Y G A ++ + + + A++ Sbjct: 725 AYGLSSYGLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRY 784 Query: 482 -------HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGF 528 + ++ A+ + G+A ++VK A + +L + + Sbjct: 785 LPDLRSSNRQRREMAERAALNAPIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDEL 844 Query: 529 ACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 V G + + + + + + R Sbjct: 845 LVEVAPGEAAAVEAIVRDKMATPVELSVPLDVAVGVGR 882 >gi|293192693|ref|ZP_06609647.1| DNA polymerase I [Actinomyces odontolyticus F0309] gi|292820200|gb|EFF79197.1| DNA polymerase I [Actinomyces odontolyticus F0309] Length = 908 Score = 196 bits (498), Expect = 9e-48, Method: Composition-based stats. Identities = 100/575 (17%), Positives = 190/575 (33%), Gaps = 82/575 (14%) Query: 39 DEPVKLWDRTEQSAMPSDLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSV 98 D+ + D E S + L + + H++ R ++ Sbjct: 362 DKEALVIDPVELSPKQEEALGEVLATASSLIVHDAKGARHALS---SRGWTLGGVEFDTM 418 Query: 99 LARTNGLPS--SLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCT-RANHVQA 155 LA P S K + + + EG + A F G + + P RA + A Sbjct: 419 LAAYLAHPDQRSHKLEDVLSRVLGVVIEEGEGDSE-ALFDLGDMGAGPSAAQVRAGKLAA 477 Query: 156 W--QLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELI 213 + L R E++ L+D E L +L + D G D ++ L + + Sbjct: 478 YLHPLASTLRSRLEESSEAAL-----LTDMEMPLSVLLGQMEDIGIAADTSVLNGLSDEL 532 Query: 214 AQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS-------EGTLKSILS 266 + E + S L+ LF G+ + L + + Sbjct: 533 GKAVDAAREGAWAAAGREVNLS-SPKQLQELLFDHFGLPKTKKTKTGYTTNADALADLHA 591 Query: 267 HSNITQLAKDLILNRLASSGSAILK---LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGC 323 ++ A L L + I +++LS V+SDGR+ T A+ TGR + Sbjct: 592 KTSDEGGAGHDFLGFLLTHRDRIKLKQMVDSLSATVASDGRIHTTFSQVAAA-TGRLASS 650 Query: 324 VFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLA 382 QN+P + +R +A G + L+ AD + Sbjct: 651 DPNLQNIPARSAD------------------------GMRIRGAFVAGEGFESLMSADYS 686 Query: 383 GIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ 442 IE R++A ++G++ I+AF +GED++ T + F TP+ +VS E+R+ K L Y Sbjct: 687 QIEMRLMAHLSGDEALIEAFNSGEDLHRTMASMVFGTPVAEVSAEERSRIKATSYGLAYG 746 Query: 443 ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESH----------------- 481 G A ++ + + + A++ Sbjct: 747 LSSYGLAAQLGIPVPEAAALRDRYFERFGKVRDYLEGLVAQARADGYTQTMFGRRRYLPD 806 Query: 482 ----HLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGV------LQLWKDLTEGFACV 531 + ++ A+ + G+A ++VK A + +L + + Sbjct: 807 LRSSNRQRREMAERAALNAPIQGSAADIVKIAMINVVDALSEAGLKSRLLVQIHDELLVE 866 Query: 532 VQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSR 566 V G + + + + + + R Sbjct: 867 VAPGEAAAVEAIVRDRMATPVELSVPLDVAVGVGR 901 >gi|308235787|ref|ZP_07666524.1| DNA polymerase I [Gardnerella vaginalis ATCC 14018] gi|311114446|ref|YP_003985667.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] gi|310945940|gb|ADP38644.1| DNA-directed DNA polymerase I [Gardnerella vaginalis ATCC 14019] Length = 1033 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 66/392 (16%), Positives = 149/392 (38%), Gaps = 73/392 (18%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 + D E + + + + D G +D+ ++ +++ A E + + + + + I + + Sbjct: 623 MVDVEMPVSRVLRGMEDAGAAVDMSRLVSMRDNFAAEAQFAQKMALDVANKPI-NLQSPK 681 Query: 240 ALRMYLFLITGIDLVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+ + + + + A + L + LK Sbjct: 682 QLQQLLFEDMGLKPTRRTKSGSYTTNAEALQELYAKIDPDEKASQFLGALLKHRETNKLK 741 Query: 292 --LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALN 348 + +L ++ DGR+ T + A+ TGR S QN+P + Sbjct: 742 QIVQSLIDSARYEDGRIHTTFEQTIAA-TGRLSSSDPNLQNIPNR--------------- 785 Query: 349 RGETIADPLGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGED 407 + +R+ I N +L+ D + +E R++A + ++ IKAF +G D Sbjct: 786 ---------NVVGREIRAAFIPGNQYDQLMSCDYSQVELRIMAHASADETLIKAFKSGVD 836 Query: 408 IYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFS 463 + + + P+++VS +QR+ K M L Y G AK + + +++ Sbjct: 837 FHKFVASLVYKIPVEQVSPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPAAAEVLKEKYF 896 Query: 464 QNVKSTSTFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTA 502 + + + + S + ++ A+ + G+A Sbjct: 897 DTFGGVHDYLESLVDKARKLGYTQTMFGRRRYFPKLNSTNRASRESAERAALNAPIQGSA 956 Query: 503 CELVKKAW----------RAKHQGVLQLWKDL 524 +++K A + K + +LQ+ +L Sbjct: 957 ADIMKLAMIQVDKDLREAKVKSRVILQIHDEL 988 >gi|283783098|ref|YP_003373852.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] gi|283441155|gb|ADB13621.1| DNA-directed DNA polymerase [Gardnerella vaginalis 409-05] Length = 1025 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 65/402 (16%), Positives = 148/402 (36%), Gaps = 73/402 (18%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T + K+ ++D E + + + + D G +D+ + + + + + + K+ Sbjct: 605 TLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSADAEFAQNMAWKVAG 664 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNR 281 + + + L+ LF G+ ++ L+++ + + A + Sbjct: 665 SSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGAL 723 Query: 282 LASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + LK + +L +A D R+ T + A+ TGR S QN+P + Sbjct: 724 LKHRETNKLKQIVQSLIDAAHYDDRRIHTTFEQTIAA-TGRLSSADPNLQNIPNR----- 777 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDW 397 A +R+ I + L+ D + +E R++A + + Sbjct: 778 -------------------NAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKT 818 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+AF +G D + + + P+++V+ +QR+ K M L Y G AK + Sbjct: 819 LIEAFRSGVDFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPA 878 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 + ++ + + + + Q S++ ++ Sbjct: 879 EAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNNRASREAAERG 938 Query: 493 AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 A+ + GTA +++K A + + + +LQ+ +L Sbjct: 939 ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDEL 980 >gi|294786803|ref|ZP_06752057.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315226433|ref|ZP_07868221.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] gi|294485636|gb|EFG33270.1| DNA polymerase I [Parascardovia denticolens F0305] gi|315120565|gb|EFT83697.1| DNA-directed DNA polymerase I [Parascardovia denticolens DSM 10105] Length = 1042 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 75/440 (17%), Positives = 155/440 (35%), Gaps = 83/440 (18%) Query: 163 CKRDVEATRELFKRLIPLSD----------GERDLWLLDQTINDRGYRIDLDLVLKLQEL 212 C D R L P+ E + + + G +D + +++E Sbjct: 605 CALDCAYLRALHDLFHPVLASRGQINLLKTIELPVSRVLSAMEMTGAGVDQSRLEQMRES 664 Query: 213 IAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGT--------LKSI 264 + + ++ + + I + + L+ LF G+ ++ L+ + Sbjct: 665 FSAQAEQAQQIAWQEAGKEI-NLQSPKQLQAVLFDDMGLTPTKKTKSGGRTTNAAALQEL 723 Query: 265 LSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWS 321 S + A + L LK + TL +A+ D R+ T + A+ TGR S Sbjct: 724 YMRSIHNERANAFLGALLRHREVNKLKQIVQTLIDAIDVRDSRIHTTFEQTVAA-TGRLS 782 Query: 322 GCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVAD 380 QN+P + + +R +AS+G + L+ +D Sbjct: 783 STDPNLQNIPNR------------------------NVEGREIRGAFVASDGFESLLSSD 818 Query: 381 LAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALG 440 + +E R++A ++G++ I+AF +G D + + + PID++S +QR+ K M L Sbjct: 819 YSQVELRLMAHLSGDEALIEAFRSGADFHKYVASLVYGIPIDQISSDQRSHIKAMSYGLA 878 Query: 441 YQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFED---------------------W 475 Y G A+ + + ++ + + + Sbjct: 879 YGLSTYGLAQQLGISPAEADILRAKYFSTFGKVHDYLESLVAQAKKRGYTETMFGRRRYF 938 Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG----------VLQLWKDLT 525 S ++D A+ + G+A +++K A + +Q +LQ+ +L Sbjct: 939 PDLRSSRRQLRDAAERAALNAPIQGSAADIMKIAMKKAYQDLKDAGVKSRIILQIHDELV 998 Query: 526 EGFACVVQEGGSISARRVAN 545 A QE + + Sbjct: 999 VELAPGEQEQVTAMVKEAME 1018 Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%) Query: 602 VQAISRDILCEGMKN----ATKNGYD--IVLTVHDEIVSE-TPDTPYFSVGTLCSLM 651 +Q + DI+ MK G I+L +HDE+V E P + M Sbjct: 961 IQGSAADIMKIAMKKAYQDLKDAGVKSRIILQIHDELVVELAPGEQEQVTAMVKEAM 1017 >gi|298253854|ref|ZP_06977441.1| DNA polymerase I [Gardnerella vaginalis 5-1] gi|297531997|gb|EFH70972.1| DNA polymerase I [Gardnerella vaginalis 5-1] Length = 1015 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 66/402 (16%), Positives = 148/402 (36%), Gaps = 73/402 (18%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T + K+ ++D E + + + + D G +D+ + + + + + + K+ Sbjct: 595 TLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSSMLKQFSADAEFAQNMAWKVAG 654 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNR 281 + + + L+ LF G+ ++ L+++ + + A + Sbjct: 655 SSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGAL 713 Query: 282 LASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + LK + +L +A D R+ T + A+ TGR S QN+P + Sbjct: 714 LKHRETNKLKQIVQSLIDAAHYDDRRIHTTFEQTIAA-TGRLSSADPNLQNIPNR----- 767 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDW 397 A +R+ I + L+ D + +E R++A + + Sbjct: 768 -------------------NAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKT 808 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+AF +G D + + + P+++VS +QR+ K M L Y G AK + Sbjct: 809 LIEAFRSGVDFHKYVASLVYKIPVEQVSPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPA 868 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 + ++ + + + + Q S++ ++ Sbjct: 869 EAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNNRASREAAERG 928 Query: 493 AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDL 524 A+ + GTA +++K A + + + +LQ+ +L Sbjct: 929 ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDEL 970 >gi|71032543|ref|XP_765913.1| hypothetical protein [Theileria parva strain Muguga] gi|68352870|gb|EAN33630.1| hypothetical protein TP01_0386 [Theileria parva] Length = 1786 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 95/550 (17%), Positives = 191/550 (34%), Gaps = 109/550 (19%) Query: 14 QPLPKVGVWAYAEQAV--ITLCAYAWDDEPVKLWDRTE--------QSAMP--------S 55 + G+ + I L + ++P + D + +S +P Sbjct: 1224 VDIETTGL----DHNTNQIRLVQLSVPNQPSLIIDLFKLSTNNPDAESVVPGRNELIKCE 1279 Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLA 115 L + + + + V HN F+ + + I +++A + Sbjct: 1280 WLKKLFKSKETVKVFHNGKFDINFLR---VYGFEFEGPIFDTMVASKL--------LVAS 1328 Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELF- 174 S LT + E + Y + + +Q ++ Y RD L+ Sbjct: 1329 RYISCKLTHVSE-----RYLNIVLDKTQQY--SDWSTLQLFEEQLLYSARDSFVLLPLYV 1381 Query: 175 --------KRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV- 225 L ++ E L + G ++D D + LQ+ + QE +++ + Sbjct: 1382 ILEHLLKINNLSDIASVENKCILATSDMELNGIQVDEDKLKFLQDELKQEHQEISNTLYS 1441 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASS 285 +L I + Q + L + + ++D S+ + S S S + + + I++ L Sbjct: 1442 QLNQSEINLNSQ----KQVLEKLQELKIMDKSKKKIISDTSESTLIRNMSNPIISSLREY 1497 Query: 286 GSAILKL----NTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEIL 340 A L L ++ R+ GA +GR+S Q +PR ++ Sbjct: 1498 RKANKALTAFTQKLPNHINPITKRIYPNYNQLGA-ESGRFSCDGPNLQQVPRDKK----- 1551 Query: 341 TQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIK 400 R C +A G K V+AD + IE R+ A IA + I+ Sbjct: 1552 -----------------------FRECFVAPKGSKFVIADFSQIELRIAAEIANDPKMIQ 1588 Query: 401 AFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQ 460 A+ D++ T + N I+ V+KE+R + K + L + + M + G +L+ Sbjct: 1589 AYQQKVDLHSLTASILKNKNINDVNKEERQLAKAVNFGLIFGMSINGLR-MYAETGYNLK 1647 Query: 461 QFSQNVKS--TSTFEDWEQAESHHLWMQDQYPEFA------------------VKDKLIG 500 K TS F +++ + H +++ P + + G Sbjct: 1648 LTQNEAKEIYTSFFNNFKGILNWHNSVKNSRPTMVRTLGNRLSVFESFSFTRSLNYPVQG 1707 Query: 501 TACELVKKAW 510 T+ ++ K+ Sbjct: 1708 TSADITKETM 1717 >gi|58616765|ref|YP_195964.1| DNA polymerase I [Ehrlichia ruminantium str. Gardel] gi|58416377|emb|CAI27490.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Gardel] Length = 860 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 73/379 (19%), Positives = 133/379 (35%), Gaps = 63/379 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + + G ID ++ KL + + L+E I KL+ + L Sbjct: 463 RIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSR-QL 521 Query: 242 RMYLFLITGIDLVDM----SEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLS 296 LF GI + T +L + D IL + + L+ Sbjct: 522 STILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLA 581 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + + ++ T ++ TGR S QN+P + Sbjct: 582 KQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRS---------------------- 619 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 + +R+ IA +G KL+ AD + IE R++A IA AF+ +DI++ T + Sbjct: 620 --EEGNAIRNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQI 677 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 FNT + K+ R K + + Y G AK S ++ + ++ ++ Sbjct: 678 FNT--QNIDKKLRRKAKSINFGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSY 735 Query: 473 -EDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWR 511 ED + H + + + AV L GT+ +++K + Sbjct: 736 IEDIKVYARTHGYTRTVFGRKCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMI 795 Query: 512 ------AKHQGVLQLWKDL 524 +LQ+ +L Sbjct: 796 HLFDRLKTGYMILQVHDEL 814 Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 603 QAISRDILCEGMKNA---TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 Q S DI+ M + K GY I L VHDE++ E P+ +V + +M Sbjct: 783 QGTSADIIKMSMIHLFDRLKTGYMI-LQVHDELLFEVPEDHVDNTVKLIKEVM 834 >gi|57238779|ref|YP_179915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58578703|ref|YP_196915.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|57160858|emb|CAH57760.1| DNA polymerase I [Ehrlichia ruminantium str. Welgevonden] gi|58417329|emb|CAI26533.1| DNA polymerase I (POL I) [Ehrlichia ruminantium str. Welgevonden] Length = 865 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 73/379 (19%), Positives = 133/379 (35%), Gaps = 63/379 (16%) Query: 182 DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYAL 241 E+ L + + G ID ++ KL + + L+E I KL+ + L Sbjct: 468 RIEKPLINVLHNMEKIGIMIDGSILDKLSSTFSDKISVLEEKIYKLSGEEFNIASSR-QL 526 Query: 242 RMYLFLITGIDLVDM----SEGTLKSILSHSNITQL-AKDLILNRLASSGSAILKLNTLS 296 LF GI + T +L + D IL + + L+ Sbjct: 527 STILFDKMGIKKGKKLSSGTYSTDAEVLHELAFNGVEIADEILKWRHFTKLKNTYTDVLA 586 Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356 + + ++ T ++ TGR S QN+P + Sbjct: 587 KQIDNNTSRVHTFYSMTSTVTGRLSSSNPNLQNIPIRS---------------------- 624 Query: 357 LGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKA 416 + +R+ IA +G KL+ AD + IE R++A IA AF+ +DI++ T + Sbjct: 625 --EEGNAIRNAFIAKSGYKLISADYSQIELRIMAHIASVQAFRDAFSLDQDIHLITAQQI 682 Query: 417 FNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTF 472 FNT + K+ R K + + Y G AK S ++ + ++ ++ Sbjct: 683 FNT--QNIDKKLRRKAKSINFGIIYGISPFGLAKQLGITRSEASKHIENYFKSYPEIKSY 740 Query: 473 -EDWEQAESHHLWMQDQY--------------------PEFAVKDKLIGTACELVKKAWR 511 ED + H + + + AV L GT+ +++K + Sbjct: 741 IEDIKVYARTHGYTRTVFGRKCFIKDINSNNHALRNFSERAAVNAPLQGTSADIIKMSMI 800 Query: 512 ------AKHQGVLQLWKDL 524 +LQ+ +L Sbjct: 801 HLFDRLKTGYMILQVHDEL 819 Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 5/53 (9%) Query: 603 QAISRDILCEGMKNA---TKNGYDIVLTVHDEIVSETPDTP-YFSVGTLCSLM 651 Q S DI+ M + K GY I L VHDE++ E P+ +V + +M Sbjct: 788 QGTSADIIKMSMIHLFDRLKTGYMI-LQVHDELLFEVPEDHVDNTVKLIKEVM 839 >gi|297243661|ref|ZP_06927592.1| DNA polymerase I [Gardnerella vaginalis AMD] gi|296888412|gb|EFH27153.1| DNA polymerase I [Gardnerella vaginalis AMD] Length = 1025 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 68/423 (16%), Positives = 153/423 (36%), Gaps = 73/423 (17%) Query: 170 TRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTD 229 T + K+ ++D E + + + + D G +D+ + + + + + + K+ Sbjct: 605 TLDDRKQTGLMTDLEMPISRVLRGMEDVGAAVDMQRLSGMLKQFSADAEFAQNMAWKVAG 664 Query: 230 GIIRSSRQTYALRMYLFLITGIDLVDMSE--------GTLKSILSHSNITQLAKDLILNR 281 + + + L+ LF G+ ++ L+++ + + A + Sbjct: 665 SSV-NLQSPKQLQQILFEHFGLKPTRRTKNGSYTTNAEALQAMYVKLDPEEPASQFLGAL 723 Query: 282 LASSGSAILK--LNTLSEAVS-SDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEE 338 L + LK + +L +A D R+ T + A+ TGR S QN+P + Sbjct: 724 LKHRETNKLKQIVQSLIDAAHYDDRRIHTTFEQTIAA-TGRLSSADPNLQNIPNR----- 777 Query: 339 ILTQTIQALNRGETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDW 397 A +R+ I + L+ D + +E R++A + + Sbjct: 778 -------------------NAAGREIRAAFIPGEEFEYLMSCDYSQVELRIMAHASHDKT 818 Query: 398 KIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMAS 453 I+AF +G D + + + P+++V+ +QR+ K M L Y G AK + Sbjct: 819 LIEAFRSGADFHKYVASLVYKIPVEQVTPDQRSHVKAMSYGLAYGLSTYGLAKQLSISPA 878 Query: 454 HCGLDLQQFSQNVKSTSTFED---------------------WEQAESHHLWMQDQYPEF 492 + ++ + + + + Q S++ ++ Sbjct: 879 EAEMLKNKYFDTFGNVHDYLESLVSKAKELGYTETMFGRRRYFPQLSSNNRASREAAERG 938 Query: 493 AVKDKLIGTACELVKKAW----------RAKHQGVLQLWKDLTEGFACVVQEGGSISARR 542 A+ + GTA +++K A + + + +LQ+ +L + QE R+ Sbjct: 939 ALNAPIQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQEQVENIVRK 998 Query: 543 VAN 545 Sbjct: 999 AME 1001 Score = 44.0 bits (102), Expect = 0.088, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M K ++L +HDE++ E V + Sbjct: 944 IQGTAADIMKLAMLRVDLGLREAKVRSRVILQIHDELILEISHGEQEQVENIVR 997 >gi|213692610|ref|YP_002323196.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524071|gb|ACJ52818.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 955 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 87/504 (17%), Positives = 169/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 453 VDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 512 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E+ RD+ R L L P+ D WL+ Sbjct: 513 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 616 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++G++ I+AF +G D + + + P Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 771 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIA 915 Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 927 >gi|320093718|ref|ZP_08025583.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] gi|319979339|gb|EFW10829.1| DNA-directed DNA polymerase I [Actinomyces sp. oral taxon 178 str. F0338] Length = 936 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 69/409 (16%), Positives = 149/409 (36%), Gaps = 72/409 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 LSD E + + G +D + L + + + ++ E + + + S Sbjct: 527 LSDVEMPTAAVLAGMERVGIGVDSARLGALSDELGGDVERAREGALAVLGREVNLS-SPK 585 Query: 240 ALRMYLFLITGIDLVDMSE-------GTLKSILSHS-NITQLAKDLILNRLASSGSAILK 291 L+ LF G+ ++ L+ + + + + + + LA LK Sbjct: 586 QLQEVLFEHFGLPRTRRTKTGYTTNAEALQDLYAKTAERGGDGHEFLGHLLAHRDRIKLK 645 Query: 292 --LNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNR 349 +++L +V+ DGR+ T A+ TGR + QN+P + Sbjct: 646 QMVDSLIASVADDGRIHTTFS-QVAAATGRLASADPNLQNIPARSAD------------- 691 Query: 350 GETIADPLGLASDCVRSCIIASNG-KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDI 408 +R +A G + L+ AD + IE R++A ++ ++ I AF +GED+ Sbjct: 692 -----------GMRIRGGFVAGPGFEALMSADYSQIEMRIMAHLSQDEGLIGAFNSGEDL 740 Query: 409 YVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQ 464 + T + F TP+ +V+ +QR+ K L Y G +K +++ + Sbjct: 741 HRTMASMVFGTPVAEVTAQQRSRIKATSYGLAYGLSKYGLSKQLGIPVPEAAALRERYFE 800 Query: 465 NVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTAC 503 + + ++ + ++ A+ + G+A Sbjct: 801 RFGGVRDYLESLVDQARSRGYTETMYHRRRYLPDLGSDNRQRREMAERAALNAPIQGSAA 860 Query: 504 ELVKKAWRA----------KHQGVLQLWKDLTEGFACVVQEGGSISARR 542 +++K A + + ++Q+ +L A +E + R+ Sbjct: 861 DIMKLAMIGVVGALGRAGLRSRVLVQIHDELLVEVAPGERERVEEAVRQ 909 >gi|320458761|dbj|BAJ69382.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 950 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 87/504 (17%), Positives = 169/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 448 VDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E+ RD+ R L L P+ D WL+ Sbjct: 508 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 611 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++G++ I+AF +G D + + + P Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 766 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922 >gi|296453882|ref|YP_003661025.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] gi|296183313|gb|ADH00195.1| DNA polymerase I [Bifidobacterium longum subsp. longum JDM301] Length = 955 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 87/504 (17%), Positives = 169/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 453 VDLDMDLPMFDTKLAGYLTQPDFHADSLKQAAEHFLDLHFTETEQPSQGTLDFDDDQVEE 512 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E+ RD+ R L L P+ D WL+ Sbjct: 513 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 616 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++G++ I+AF +G D + + + P Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSGDEALIEAFRSGADFHKYVASMVYKLP 771 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 892 TLAEAHVKSCIILQIHDELVVEIA 915 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNATKNGYD------IVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A + + I+L +HDE+V E V L Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSCIILQIHDELVVEIAPGEGDQVTELVR 927 >gi|169837915|ref|ZP_02871103.1| DNA polymerase I [candidate division TM7 single-cell isolate TM7a] Length = 552 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 97/270 (35%), Gaps = 31/270 (11%) Query: 181 SDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYA 240 +D + L L + RG +I+ + + I ++ ++L + I + + Sbjct: 309 TDFDFPLAPLLFKMEKRGVKINTSYLADMSHEIGKKYEELQQKIFDIAGYNFNIA-SPAQ 367 Query: 241 LRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTL 295 L LF+ + + +G + +L + L + KL + L Sbjct: 368 LSDMLFIKLQLPTTGIKKGKTGYSTGQKELNKLRGLHPVIELIEQTRELAKLKNTYVDAL 427 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 + V + RL T TGR S QN+P + Sbjct: 428 PKLVDKNYRLHTTFN-QDVVSTGRLSSTHPNLQNIPIRS--------------------- 465 Query: 356 PLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415 +R+ IA LV AD + E R+ A +AG++ I F N DI+ T + Sbjct: 466 ---TLGKKIRNAFIADEDNILVSADYSQFELRLAAIMAGDEDLINDFNNDIDIHTKTASD 522 Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGA 445 + P+D+V+ QR KV+ + Y Sbjct: 523 VYKIPMDQVTSNQRRNAKVINFGVLYGMSP 552 >gi|322690826|ref|YP_004220396.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] gi|320455682|dbj|BAJ66304.1| DNA polymerase I [Bifidobacterium longum subsp. longum JCM 1217] Length = 950 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 448 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E+ RD+ R L L P+ D WL+ Sbjct: 508 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 611 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++ ++ I+AF +G D + + + P Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 766 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922 >gi|317481896|ref|ZP_07940923.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] gi|316916687|gb|EFV38082.1| DNA polymerase I [Bifidobacterium sp. 12_1_47BFAA] Length = 950 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 448 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E+ RD+ R L L P+ D WL+ Sbjct: 508 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 611 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++ ++ I+AF +G D + + + P Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 766 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922 >gi|189439601|ref|YP_001954682.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227546057|ref|ZP_03976106.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|189428036|gb|ACD98184.1| DNA polymerase I [Bifidobacterium longum DJO10A] gi|227213504|gb|EEI81363.1| DNA polymerase I [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517101|emb|CBK70717.1| DNA polymerase I [Bifidobacterium longum subsp. longum F8] Length = 955 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 453 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 512 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E+ RD+ R L L P+ D WL+ Sbjct: 513 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 616 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++ ++ I+AF +G D + + + P Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 771 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIA 915 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 927 >gi|322688838|ref|YP_004208572.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] gi|320460174|dbj|BAJ70794.1| DNA polymerase I [Bifidobacterium longum subsp. infantis 157F] Length = 950 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 86/504 (17%), Positives = 168/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 448 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E+ RD+ R L L P+ D WL+ Sbjct: 508 DP---------------NEHRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 611 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++ ++ I+AF +G D + + + P Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 766 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922 >gi|294810416|ref|ZP_06769073.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b] gi|294442381|gb|EFG11191.1| DNA-directed DNA polymerase [Bacteroides xylanisolvens SD CC 1b] Length = 340 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 51/321 (15%), Positives = 95/321 (29%), Gaps = 66/321 (20%) Query: 246 FLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL-----NTLSEAVS 300 F I T + + S + L + + KL + L ++ Sbjct: 2 FDKLKIVEKAKKTKTGQYVTSEEVLESLRHKHPVVEKILEHRGLKKLLGTYIDALPLLIN 61 Query: 301 S-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGL 359 GR+ + + TGR S QN+P + Sbjct: 62 PRTGRVHTSFN-QTVTATGRLSSSNPNLQNIPIR------------------------DE 96 Query: 360 ASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNT 419 +R I G AD + IE R++A ++ + I AF + DI+ T AK + Sbjct: 97 NGKEIRKAFIPDEGCLFFSADYSQIELRIMAHLSEDKNMIDAFLSNHDIHAATAAKIYKI 156 Query: 420 PIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475 + V + R K + Y G A+ + + + + D Sbjct: 157 DLKDVDSDMRRKAKTANFGIIYGISVFGLAERMNVDRKEAKELIDGYFETYPGVKAYMDK 216 Query: 476 ---------------------EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKH 514 S + ++ A+ + G+A +++K A + Sbjct: 217 SIQVAQEKGYVETIFHRKRFLPDINSRNAVVRGYAERNAINAPIQGSAADIIKVAMARIY 276 Query: 515 QG----------VLQLWKDLT 525 Q +LQ+ +L Sbjct: 277 QRFQAEGIQAKMILQVHDELN 297 >gi|15612428|ref|NP_224081.1| DNA polymerase I [Helicobacter pylori J99] gi|9789748|sp|Q9ZJE9|DPO1_HELPJ RecName: Full=DNA polymerase I; Short=POL I gi|4155975|gb|AAD06938.1| DNA POLYMERASE I [Helicobacter pylori J99] Length = 897 Score = 194 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 89/498 (17%), Positives = 173/498 (34%), Gaps = 80/498 (16%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 K + + + R T +LA + E+L + I F + Sbjct: 413 LKAKYQVPLENIRIQDTQILAFLKNP----EKVGFDEVLKEYLKEDLIPHEKIKDF--KT 466 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRG 198 + + A + EY ++ L + L+ L+ D E + + +G Sbjct: 467 KSKAEKSELLSMELNALKRLCEYFEKG-----GLEEDLLTLARDIETPFVKVLMGMEFQG 521 Query: 199 YRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM-- 256 ++ID +L++ E L+ I+ L + L L+ G+ Sbjct: 522 FKIDAPYFKRLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYDKLGLPKNKSHS 580 Query: 257 --SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGA 314 + LK + H +I + + LN+L ++ + L D ++ T G Sbjct: 581 TDEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG- 634 Query: 315 SRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NG 373 + TGR S QN+P + P GL +R IAS Sbjct: 635 TATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKE 670 Query: 374 KKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGK 433 L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I K Sbjct: 671 YCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAK 727 Query: 434 VMELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE---------- 479 + L Y G+K S ++ + + S + + + E Sbjct: 728 SINFGLVYGMGSKKLSETLSIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTL 787 Query: 480 ----------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDL 524 + +++ Y V G+A +L+K R K+ ++L + Sbjct: 788 LGRYRVFDFTGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQV 847 Query: 525 TEGFACVVQEGGSISARR 542 + ++E + ++ Sbjct: 848 HDELIFEIEEKNAPELQQ 865 >gi|23465554|ref|NP_696157.1| DNA polymerase I [Bifidobacterium longum NCC2705] gi|23326218|gb|AAN24793.1| DNA polymerase I [Bifidobacterium longum NCC2705] Length = 955 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 86/504 (17%), Positives = 167/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 453 VDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 512 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E RD+ R L L P+ D WL+ Sbjct: 513 DP---------------NELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEI-NLQSPKQLQKVLFEDMGLK 616 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++ ++ I+AF +G D + + + P Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 771 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIA 915 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 927 >gi|312133000|ref|YP_004000339.1| pola [Bifidobacterium longum subsp. longum BBMN68] gi|311773986|gb|ADQ03474.1| PolA [Bifidobacterium longum subsp. longum BBMN68] Length = 955 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 86/504 (17%), Positives = 167/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 453 VDLDMDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 512 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E RD+ R L L P+ D WL+ Sbjct: 513 DP---------------NELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 557 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 558 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGTEI-NLQSPKQLQKVLFEDMGLK 616 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 617 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 676 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 677 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 711 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++ ++ I+AF +G D + + + P Sbjct: 712 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 771 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 772 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 831 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 832 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 891 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 892 TLAEAHVKSRIILQIHDELVVEIA 915 Score = 43.2 bits (100), Expect = 0.13, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 874 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 927 >gi|239621897|ref|ZP_04664928.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515088|gb|EEQ54955.1| DNA polymerase I [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 950 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 86/504 (17%), Positives = 167/504 (33%), Gaps = 101/504 (20%) Query: 86 IDIPSKRWICTSVLARTNGLPSSLKN---ACLALNFSEHLTKMEEGKALIARFCKGSIDS 142 +D+ + + LA P + H T+ E+ F ++ Sbjct: 448 VDLDLDLPMFDTKLAGYLAQPDFHADSLKQAAEHFLDIHFTETEQPSQGTLDFDDDQVEE 507 Query: 143 PPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLL----------DQ 192 P E RD+ R L L P+ D WL+ Sbjct: 508 DP---------------NELRLRDLAIIRSLAVTLGPIIDEREQCWLMRAIELPVSRVLH 552 Query: 193 TINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID 252 + G ++D ++ +++ A E ++ E + I + + L+ LF G+ Sbjct: 553 GMEHTGAKVDSVRLVSMRDQFAAEARQAQEMAWEYAGIEI-NLQSPKQLQKVLFEDMGLK 611 Query: 253 LVDMSEGT--------LKSILSHSNITQLAKDLILNRLASSGSAILK--LNTLSEAVS-S 301 ++ L+ + S + A + L LK + TL +A + S Sbjct: 612 PTKRTKSGSYTTNAAALQDLYVKSVDNERANGFLGALLRHREINKLKQIVQTLIDATNTS 671 Query: 302 DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLAS 361 D R+ T + A+ TGR S QN+P + A Sbjct: 672 DERIHTTFEQTVAA-TGRLSSVDPNLQNIPNR------------------------NAAG 706 Query: 362 DCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTP 420 +R + G + L+ D + +E R++A ++ ++ I+AF +G D + + + P Sbjct: 707 REIRGVFVPGEGYEALMSCDYSQVELRIMADLSDDEALIEAFRSGADFHKYVASMVYKLP 766 Query: 421 IDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWE 476 +D+++ +QR+ K M L Y G A+ K ++ + + Sbjct: 767 VDQITGDQRSHVKAMSYGLAYGLSTYGLAQQLKIAPREAEALKNRYFDTFGKVHDYLESL 826 Query: 477 QAESHH-------LWMQDQYPEF--------------AVKDKLIGTACELVKKAWRAKHQ 515 A + + +P A+ + G+A +++K A Q Sbjct: 827 VANAREKGYTETIFGRRRYFPALHSTNRVAREAAERAALNAPIQGSAADIMKIAMIRAEQ 886 Query: 516 ----------GVLQLWKDLTEGFA 529 +LQ+ +L A Sbjct: 887 TLAEAHVKSRIILQIHDELVVEIA 910 Score = 43.2 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 6/54 (11%) Query: 602 VQAISRDILCEGMKNAT------KNGYDIVLTVHDEIVSETPDTPYFSVGTLCS 649 +Q + DI+ M A I+L +HDE+V E V L Sbjct: 869 IQGSAADIMKIAMIRAEQTLAEAHVKSRIILQIHDELVVEIAPGEGDQVTELVR 922 >gi|68171574|ref|ZP_00544948.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88658019|ref|YP_506910.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] gi|67999000|gb|EAM85677.1| DNA polymerase A [Ehrlichia chaffeensis str. Sapulpa] gi|88599476|gb|ABD44945.1| DNA polymerase I [Ehrlichia chaffeensis str. Arkansas] Length = 944 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 70/382 (18%), Positives = 130/382 (34%), Gaps = 65/382 (17%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 E+ L + ++ G ID+D++ L +++ L+ +I +L + Sbjct: 542 YERVEKPLIRVLDSMEKVGMLIDIDILKTLSSTFSEKVSVLENEIYRLAGTEFNIASS-K 600 Query: 240 ALRMYLFLITGIDLVDMSEG----TLKSILSHSNITQL-AKDLILNRLASSGSAILKLNT 294 L LF GI T +L+ ++ D IL + + Sbjct: 601 QLGTVLFDKMGIKKSKKLSSGSYSTDAEVLNDLVFNEIEIADKILQWRHFTKLKSTYTDA 660 Query: 295 LSEAVSSD-GRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETI 353 L + ++S+ GR+ T ++ TGR S QN+P + Sbjct: 661 LGKQINSNSGRIH-TFYSMISTATGRLSSSNPNLQNIPIRS------------------- 700 Query: 354 ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTY 413 + +R +A G KLV AD + IE R++A IAG AF +DI+ T Sbjct: 701 -----EEGNAIRRAFVARKGYKLVSADYSQIELRIMAHIAGVQAFKDAFFLDQDIHSITA 755 Query: 414 AKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMASHCGLDLQQFSQNVKST 469 + F T + K R K + + Y AK S + + ++ Sbjct: 756 EQIFCT--QSLDKNLRRKAKSINFGIIYGMSAFGLAKQLGISRSEANAYIDNYFKSYPEI 813 Query: 470 STFED---------------------WEQAESHHLWMQDQYPEFAVKDKLIGTACELVKK 508 ++ + S + ++ A+ L GT+ +++K Sbjct: 814 QSYMNNIKIYAKTYGYTRTIFGRKCFIRDINSSNAAARNFSERAAINAPLQGTSADIIKM 873 Query: 509 AW------RAKHQGVLQLWKDL 524 + +LQ+ +L Sbjct: 874 SMIHLFDKITHGSLILQVHDEL 895 >gi|288870561|ref|ZP_06409803.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] gi|288866720|gb|EFC99018.1| DNA-directed DNA polymerase [Clostridium hathewayi DSM 13479] Length = 653 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 125/677 (18%), Positives = 207/677 (30%), Gaps = 171/677 (25%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQSAMPSDL--LQYL 61 L ID ET G+ ++++ + L + PV + D +P L+ L Sbjct: 99 LAIDTET--------TGLDPHSDR--LRLIQISAPGIPVLVIDCAAF--LPDGFACLKEL 146 Query: 62 RDETVMCVAHNSLFERILFKKTLGIDIPS-KRWICTSVLARTNGLPS-SLKNACLALNFS 119 + + HN+ F+ +GID + + L R G P + Sbjct: 147 LNTPSEKIFHNARFDLQFL-MGIGIDCFPVFDTMLAAQLLRPCGGPLKAGLAVVADHYLG 205 Query: 120 EHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKR--L 177 L K E+ + + GS + + AW L Y + L R L Sbjct: 206 IKLDKTEQTGSWDSASLTGSQLAYA-------ALDAWILLKLY-----DVMNPLLARHGL 253 Query: 178 IPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGI------ 231 + E G +DL+ +L+ ++ E + + Sbjct: 254 GRTASIEFACVSAIARTEYDGINLDLEKWDELRRKTEKQYDAALETLYTYSGTPSCQLTL 313 Query: 232 --------IRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 + Y L+ L GI + S +L S + L + Sbjct: 314 WGGEEALDVNFESNPYVLK--LLNRYGIPVTSTSRRSLAPYHSQPLVQALTEYR-----R 366 Query: 284 SSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQ 342 S S L+ + + RL GA +GR S Q +PR+ Sbjct: 367 HSKSLSSFLHPIPAQIHPVTHRLHPKYMQIGA-WSGRMSCYNPNIQQIPREAD------- 418 Query: 343 TIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKAF 402 RSC A +G+KL++AD + IE RV A I+G+ A Sbjct: 419 ---------------------FRSCFTAPDGRKLILADYSQIELRVAAQISGDSRMKSAC 457 Query: 403 ANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQF 462 GED++ T + + P+ +V+K QR K + L + GA+ K A Sbjct: 458 QKGEDLHALTASLISSIPVSQVTKAQRQAAKAVNFGLIFGMGAEGLKQYAGQ-------- 509 Query: 463 SQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWK 522 + V+ L E + A+ ++G+ Sbjct: 510 ----------------------------SYGVEMTLE--EAEQFRSAFFQSYRGINWWHH 539 Query: 523 DLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNT 582 DL E EG +++ R+ P + Sbjct: 540 DLRESHPL---EGRTLTGRKFLFSPNTGLAD----------------------------- 567 Query: 583 ATSQLMRERTYGGKLTENIVQAISRDILCEGM----KNATKNGYDIVLTVHDEIVSETP- 637 L VQ + DIL + + IV VHDEI+ E P Sbjct: 568 --------------LANTPVQGTAADILKHALGLLASRIRGSDKKIVAIVHDEILMEVPV 613 Query: 638 DTPYFSVGTLCSLMTKN 654 + +V L + M + Sbjct: 614 EEADDTVVLLKTAMEEA 630 >gi|260654849|ref|ZP_05860337.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] gi|260630564|gb|EEX48758.1| DNA polymerase I [Jonquetella anthropi E3_33 E1] Length = 848 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 72/401 (17%), Positives = 126/401 (31%), Gaps = 66/401 (16%) Query: 164 KRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 D+ E + + + L + G +D ++ + ++ + Sbjct: 431 AEDLNEKIESYGMTDLMKTVDLPLLPALVRMEQAGVHLDGPAMVAFTAQLEASLDRVSGE 490 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMS--EGTLKSILSHSNITQLAKDL-ILN 280 I+ G I + + LF G+ ++ + +G + + + D+ + Sbjct: 491 ILTYAGGPI-NLNSPKQVGELLFEKLGLPVIKRTAQKGYSTDVSVLETLCRSVGDICPVP 549 Query: 281 RLASSGSAILKLNT----LSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERS 336 L + K+ + A S DG + T + + TGR S QNLP Sbjct: 550 ALLLEHRELSKMLSGFAVPLAAASRDGVVHSTFEAQT-TGTGRLSSRDPNLQNLPN---- 604 Query: 337 EEILTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGED 396 + C+ A G V AD + IE RVLA ++GE Sbjct: 605 --------------------YSELGGQLCRCLTAGPGGVFVAADYSQIELRVLAHLSGER 644 Query: 397 WKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGG----AKVFKTMA 452 + F G DI+ T A P D V+KEQR + K + L Y A Sbjct: 645 RLREIFEAGRDIHTETAAMILGIPADSVTKEQRRMAKTVTFGLLYGMSAFGLADRLSVGQ 704 Query: 453 SHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWM---------------------QDQYPE 491 + + + + + D AE+ + Sbjct: 705 AEARGIMDAYFAALPGVREYVDATVAEARRRGYSQTAYGRIRPLDEVATGRQTDRGHARR 764 Query: 492 FAVKDKLIGTACELVKKAWR--------AKHQGVLQLWKDL 524 A+ + GTA ++ K A A VLQ+ + Sbjct: 765 VAINSPVQGTAADITKMAMITVDRELAAAGVPMVLQVHDSI 805 Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 7/124 (5%) Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSD-VKGDCSYLNTATSQLMRERTYG 594 G AR + + + + V + +RR YS G L+ + +R + Sbjct: 703 GQAEARGIMDAYFAALPGVREYVDATVAEARRRGYSQTAYGRIRPLDEVATGRQTDRGHA 762 Query: 595 GKLTENI-VQAISRDILCEGMKNAT----KNGYDIVLTVHDEIVSE-TPDTPYFSVGTLC 648 ++ N VQ + DI M G +VL VHD IV TP+ L Sbjct: 763 RRVAINSPVQGTAADITKMAMITVDRELAAAGVPMVLQVHDSIVCRTTPENAEPVGKKLA 822 Query: 649 SLMT 652 MT Sbjct: 823 EFMT 826 >gi|323126201|gb|ADX30666.1| gp44 [Mycobacterium phage Wonder] Length = 604 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 116/560 (20%), Positives = 205/560 (36%), Gaps = 81/560 (14%) Query: 4 LFIDIETRSPQPLPKVGVWAYAEQAVITLCAYAWDDE----PVKLWDRTEQSAMPSDLLQ 59 L +D ET G+ Y++ L + +E PV+L R E+ A Q Sbjct: 38 LGLDTET--------TGLDIYSDGFRCRLVQFGTPNEAWVIPVELGPRYEEEA-----RQ 84 Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPS--KRWICTSVLARTNGLPSSLKNACLALN 117 LR+ V HN+ ++ + ++TLGI + + T +LA P K + Sbjct: 85 ALRNVK-GFVLHNASYDLQVIERTLGIPMEDMWPKVTDTKILAHLVD-PRPFKEGGIGHK 142 Query: 118 FSEHLTKM------EEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATR 171 E + E K L+A + + + T+ + + Y D Sbjct: 143 LEELVKHYIDAPVAENVKTLMATLAREYKTTKAHIWTKVEWTNPY--YQLYAGMDPILAA 200 Query: 172 ELFKRLIPLSDG--------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDED 223 L ++LIPL E L + + RG+ +D++ KL E + +++ Sbjct: 201 RLLQKLIPLVPSVSQDLVPYEHKLAEICSYMERRGFLLDVEYSEKLSEDMLRKQDYWASK 260 Query: 224 IVKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLA 283 L + + + L + G+ + + +EG ++L+RL Sbjct: 261 ADILYG--LENVNSPIQVAEAL-MRRGVKITERTEGGQPK----------VDKVLLDRLI 307 Query: 284 SSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSE-EILTQ 342 G + L+EA+S A + G+W + R + Sbjct: 308 KEG------DPLAEAISE------------AKKWGKWEKTWVRKFLDSRDSKDRCHASIN 349 Query: 343 TIQALNRGETI----ADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWK 398 +QA +I A L VR C +A G+ + D E RVLA ++G+ Sbjct: 350 PLQARTARMSITGIPAQTLPSGDWLVRRCFLADEGELMASVDYQAQELRVLAALSGDRTM 409 Query: 399 IKAFANGEDIYVTTYAKAFNTPIDKVSKE--QRAIGKVMELALGYQGGAKVFKTMASHCG 456 I+AF +G D+++ T A+ P +++K+ +R K + Y GGAK A G Sbjct: 410 IQAFRDGADLHLMTARAAW--PDREITKDSPERKYAKTVNFGRVYGGGAKTV---AEQTG 464 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQG 516 LD++ Q V Q S L M+ + + +A+ A + Sbjct: 465 LDMEAAKQVVDGFDRAYPGVQKLSRKLQMEASQKGHIITPVGRRLPVDP-SRAYSALNYL 523 Query: 517 VLQLWKDLTEGFACVVQEGG 536 + +D+T + E G Sbjct: 524 IQSSSRDVTGRALIRLHEAG 543 Score = 42.8 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Query: 601 IVQAISRDILCEGMKNATKNGYD--IVLTVHDEIVSETP-DTPYFSVGTLCSLMTK 653 ++Q+ SRD+ + + G+ + L +HDEI++ P D + + LM + Sbjct: 523 LIQSSSRDVTGRALIRLHEAGFTRYLRLPIHDEILASVPADKAQWGAQEIARLMAE 578 >gi|317014884|gb|ADU82320.1| DNA polymerase I [Helicobacter pylori Gambia94/24] Length = 905 Score = 194 bits (492), Expect = 5e-47, Method: Composition-based stats. Identities = 88/497 (17%), Positives = 167/497 (33%), Gaps = 78/497 (15%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 K + + + R T +LA + L E L E+ K + K Sbjct: 421 LKAKYQVPLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEDLIPHEKIKDFKTK-SKAE 479 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTINDRGY 199 A + D+ LI D E + + +G+ Sbjct: 480 KSEQLNMELNALKRLCEHFEKGGLEEDL---------LILARDIETPFMKVLMGMEFQGF 530 Query: 200 RIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM--- 256 +ID +L++ E L+ I+ L + L L+ G+ Sbjct: 531 KIDAPYFKRLEQEFKNELNVLERQILDLIGVDF-NLNSPKQLGEVLYEKLGLPKNKSHST 589 Query: 257 -SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGAS 315 + LK + H +I + + LN+L ++ + L D ++ T G + Sbjct: 590 DEKNLLKILDKHPSIPLILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-T 643 Query: 316 RTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGK 374 TGR S QN+P + P GL +R IAS Sbjct: 644 ATGRLSSHSPNLQNIP---------------------VRSPKGL---LIRKGFIASSKEY 679 Query: 375 KLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKV 434 L+ D + IE R+LA + + ++AF G DI++ T F ++++KE+R+I K Sbjct: 680 CLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EELAKEKRSIAKS 736 Query: 435 MELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE----------- 479 + L Y G+K + ++ + + S + + + E Sbjct: 737 INFGLVYGMGSKKLSETLNIPLNEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLL 796 Query: 480 ---------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLT 525 + +++ Y V G+A +L+K R K+ ++L + Sbjct: 797 GRYRVFDFNGVNDYIKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVH 856 Query: 526 EGFACVVQEGGSISARR 542 + ++E + ++ Sbjct: 857 DELIFEIEEKNAPELQQ 873 >gi|269123864|ref|YP_003306441.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] gi|268315190|gb|ACZ01564.1| DNA polymerase I [Streptobacillus moniliformis DSM 12112] Length = 861 Score = 193 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 81/408 (19%), Positives = 153/408 (37%), Gaps = 63/408 (15%) Query: 168 EATRELFKR--LIPLSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIV 225 E +L ++ + + E++ + + +G I+ + K + ++ K ++ I Sbjct: 449 EVFMDLLEKENQLDIYLEEKEFTDVLIYMEKQGIAINQNYFEKYNLELEKKIKDIENKIY 508 Query: 226 KLTDGIIRSSRQTYALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLA----KDLILNR 281 + G + L LF GI+ V ++ + + + +L+L Sbjct: 509 -IESGESFNISSPKQLGEVLFETMGIEGVKKNKRGYSTDAEVLELLRDRGIKIAELLLEY 567 Query: 282 LASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILT 341 + L + S +GR+ T G + TGR S QN+P T Sbjct: 568 RELVKLKSTYVEPLLKL-SINGRIHTTYNQTG-TATGRLSSSNPNLQNIP---------T 616 Query: 342 QTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKIKA 401 +T + +R IAS G KLV D + IE RVLA I+ ++ I A Sbjct: 617 RTYEGTK---------------IREGFIASKGMKLVSFDYSQIELRVLAEISKDENLINA 661 Query: 402 FANGEDIYVTTYAKAFN-TPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCG 456 + + D++ T K F +KVSK QR I KV+ ++ Y G +K K S Sbjct: 662 YKHNLDLHELTARKIFMLKDDEKVSKTQRNIAKVINFSVLYGKTPFGLSKELKITVSDAK 721 Query: 457 LDLQQFSQNVKSTSTFEDWEQAESH---------------------HLWMQDQYPEFAVK 495 L + + + D ++ ++ +++Q AV Sbjct: 722 LYINTYFKEYPKVRILLDDIIEKAKKDGYVETKFGTRRYVYDINSSNINIKEQAKRMAVN 781 Query: 496 DKLIGTACELVKKAWRAKHQGV----LQLWKDLTEGFACVVQEGGSIS 539 + GTA ++KK + + + +++ + + V+E +I Sbjct: 782 TVIQGTAANIIKKVMKEIYDKLCNDNVKMLLQVHDELIFEVREDINIF 829 >gi|126015340|gb|ABN70701.1| DNA polymerase 1 [Salmonella phage SETP7] gi|126015342|gb|ABN70702.1| DNA polymerase 1 [Salmonella phage SETP11] Length = 267 Score = 193 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 113/267 (42%), Gaps = 45/267 (16%) Query: 454 HCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQY----PEFA--------VKDKLIGT 501 + GLDL + ++ + T W + W + Q P + DK + Sbjct: 1 NLGLDLIEXAKTMAGTFPDHIWAATARGYEWARIQEAKRPPRPGEKDDRPSYILDKKVWR 60 Query: 502 ACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGG---------------SISARRVANV 546 C+ +K+ WR H + W+DL +G V+ G +I R + Sbjct: 61 TCDAIKRMWRESHPQTVAFWRDLKDGILAAVRNPGRDFWAGANIRSNGERAIRIWRTTEI 120 Query: 547 PRLVMRRHKRDVHIVLPSSRRLVYS------------------DVKGDCSYLNTATSQLM 588 + + LPS R L Y +V+ N T Q Sbjct: 121 DSSGRNIPGWWLCMELPSGRILSYPGIGVSVTKETDEDGRVNTNVRIKYQGENQLTRQWT 180 Query: 589 RERTYGGKLTENIVQAISRDILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTLC 648 T+GGK ENIVQA RD+L M NA GY IVL+VHDE+V ETPDTP ++V L Sbjct: 181 TLYTHGGKACENIVQAFCRDLLAYAMLNAEAGGYPIVLSVHDELVCETPDTPDYTVAELE 240 Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRYRK 675 LM P WA+G PL AEG E KRY K Sbjct: 241 KLMCALPEWAEGFPLVAEGAELKRYAK 267 >gi|317011604|gb|ADU85351.1| DNA polymerase I [Helicobacter pylori SouthAfrica7] Length = 833 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 86/496 (17%), Positives = 166/496 (33%), Gaps = 76/496 (15%) Query: 80 FKKTLGIDIPSKRWICTSVLARTNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGS 139 K + + + R T +LA + L E L E+ K + Sbjct: 349 LKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLQEDLILHEKIKDFKTK----- 403 Query: 140 IDSPPYDCTRANHVQAWQLFGEYCKRDVEATRE--LFKRLIPLSD-GERDLWLLDQTIND 196 +A ++ L KR E + L + L+ L+ E + + Sbjct: 404 --------NKAEQLERLNLELNALKRLCEYFEKGGLEENLLSLARGIEMPFMKVLINMEF 455 Query: 197 RGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM 256 +G++ID +L++ E K L+ I+ L + L L+ + + Sbjct: 456 QGFKIDAPYFKRLEQEFKDELKVLERQILDLIGEDF-NLNSPKQLGEVLYEKLNLP-KNK 513 Query: 257 SEGTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASR 316 S T + L + LIL + + L D ++ T G + Sbjct: 514 SHSTDEKSLLKIMDKHPSISLILEYRELNKLSNTYTTPLLRLKDKDDKIHTTFIQTG-TA 572 Query: 317 TGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKK 375 TGR S QN+P + +R I+S Sbjct: 573 TGRLSSHSPNLQNIPVRSSK------------------------GLLIRKGFISSSKEYC 608 Query: 376 LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVM 435 L+ D + IE R+LA + + ++AF G DI++ T F + ++KE+R+I K + Sbjct: 609 LLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFG---EDLAKEKRSIAKSI 665 Query: 436 ELALGYQGGAK----VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE------------ 479 L Y G+K S ++ + + S + + + E Sbjct: 666 NFGLVYGMGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNRMREEILKTSKAFTLLG 725 Query: 480 --------SHHLWMQDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTE 526 + +++ Y V G+A +L+K R K+ ++L + + Sbjct: 726 RYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNDSSVRLLLQVHD 785 Query: 527 GFACVVQEGGSISARR 542 ++E ++ ++ Sbjct: 786 ELIFEIEEKNALKLQQ 801 >gi|119963436|ref|YP_947809.1| DNA polymerase I [Arthrobacter aurescens TC1] gi|119950295|gb|ABM09206.1| DNA polymerase I [Arthrobacter aurescens TC1] Length = 880 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 60/361 (16%), Positives = 123/361 (34%), Gaps = 56/361 (15%) Query: 180 LSDGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239 L+ E + + + G + D + + + + + E + + Sbjct: 477 LTTLELPVARVLAQMELTGIFVSTDRMDEQLADLTKVIENAQEQAFAAIGHEV-NLGSPK 535 Query: 240 ALRMYLFLITGIDLVDMSEGTLKSILSHSNITQLAKDLILNRLASSGSAILKL----NTL 295 L+ LF G+ + + + + KL TL Sbjct: 536 QLQTVLFDELGLPKTKKIKSGYTTDAASLKGLLEKTGHEFLVQLMAHRESSKLAQMVETL 595 Query: 296 SEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIAD 355 ++V+ D R+ T A+ TGR S QN+P + Sbjct: 596 KKSVADDARIHTTYAQNIAA-TGRISSNNPNLQNIPVRS--------------------- 633 Query: 356 PLGLASDCVRSCIIASNGKK-LVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYA 414 VRS + S G + L+ AD + IE R++A ++G+ I+A+ +GED++ A Sbjct: 634 ---EEGRRVRSIFMVSEGYECLLSADYSQIEMRIMAHLSGDQALIQAYKDGEDLHRFVGA 690 Query: 415 KAFNTPIDKVSKEQRAIGKVMELALGYQ----GGAKVFKTMASHCGLDLQQFSQNVKSTS 470 + FN +V+ R+ K M L Y G +K + ++ + + Sbjct: 691 RIFNVEPAEVTSAMRSKVKAMSYGLAYGLTSFGLSKQLEISVDEARTLMKDYYDRFGAVR 750 Query: 471 TFEDWEQAESH---------------------HLWMQDQYPEFAVKDKLIGTACELVKKA 509 + D + ++ + ++ A+ + G+A +++K+A Sbjct: 751 AYLDGVRDQARVDGYTATIEGRRRYLPDLTSTNRQAREAAERIALNSPIQGSAADIIKRA 810 Query: 510 W 510 Sbjct: 811 M 811 >gi|9789856|sp|P56105|DPO1_HELPY RecName: Full=DNA polymerase I; Short=POL I Length = 891 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 91/542 (16%), Positives = 180/542 (33%), Gaps = 107/542 (19%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------------KRWICTSVLA 100 L + L + N+ F+ + + +G D+ R T +LA Sbjct: 370 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILA 429 Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 G LK K + KA ++ A Sbjct: 430 FLKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKAEKLELLSVELN-------------A 476 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + EY ++ L + L+ L+ + E + + +G++ID +L++ Sbjct: 477 LKRLCEYFEKG-----GLEENLLSLAREIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 531 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270 E L+ I++L + L L+ G+ + LK + H +I Sbjct: 532 NELHVLERQILELIGVDF-NLNSPKQLSEVLYDKLGLPKNKSHSTDEKSLLKILDKHPSI 590 Query: 271 TQLAKDLILNRLASSGSAILKLNTLSEAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNL 330 + + LN+L ++ + L D ++ T G + TGR S QN+ Sbjct: 591 ALILEYRELNKLFNTYTT-----PLLRLKDKDDKIHTTFIQTG-TATGRLSSHSPNLQNI 644 Query: 331 PRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCIIAS-NGKKLVVADLAGIEARVL 389 P + +R IAS L+ D + IE R+L Sbjct: 645 PVRS------------------------PKGLLIRKGFIASSKEYCLLGVDYSQIELRLL 680 Query: 390 AWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAK--- 446 A + + ++AF G DI++ T F + ++KE+R+I K + L Y G+K Sbjct: 681 AHFSQDKDLMEAFLKGRDIHLETSKALFG---EYLAKEKRSIAKSINFGLVYGMGSKKLS 737 Query: 447 -VFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAE--------------------SHHLWM 485 + ++ + + S + + + E + ++ Sbjct: 738 ETLNISLNEAKSYIEAYFKRFPSIKDYLNRMKEEILKTSKAFTLLGRYRVFDFTGANDYV 797 Query: 486 QDQYPEFAVKDKLIGTACELVKKAW-----RAKHQGVLQLWKDLTEGFACVVQEGGSISA 540 + Y V G+A +L+K R K+ ++L + + ++E + Sbjct: 798 KGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPEL 857 Query: 541 RR 542 ++ Sbjct: 858 QQ 859 >gi|15646079|ref|NP_208261.1| DNA polymerase I (polA) [Helicobacter pylori 26695] gi|2314647|gb|AAD08510.1| DNA polymerase I (polA) [Helicobacter pylori 26695] Length = 892 Score = 192 bits (488), Expect = 1e-46, Method: Composition-based stats. Identities = 91/542 (16%), Positives = 180/542 (33%), Gaps = 107/542 (19%) Query: 56 DLLQYLRDETVMCVAHNSLFERILFKKTLGIDIPS---------------KRWICTSVLA 100 L + L + N+ F+ + + +G D+ R T +LA Sbjct: 371 PLEEALFSPFSLEFLQNAFFKMLQHAQIIGHDLKPLLSFLKAKYQVPLENIRIQDTQILA 430 Query: 101 R-----TNGLPSSLKNACLALNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQA 155 G LK K + KA ++ A Sbjct: 431 FLKNPEKVGFDEVLKEYLKEELIPHEKIKDFKTKAEKLELLSVELN-------------A 477 Query: 156 WQLFGEYCKRDVEATRELFKRLIPLS-DGERDLWLLDQTINDRGYRIDLDLVLKLQELIA 214 + EY ++ L + L+ L+ + E + + +G++ID +L++ Sbjct: 478 LKRLCEYFEKG-----GLEENLLSLAREIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFK 532 Query: 215 QERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGIDLVDM----SEGTLKSILSHSNI 270 E L+ I++L + L L+ G+ + LK + H +I Sbjct: 533 NELHVLERQILELIGVDF-NLNSPKQLSEVLYDKLGL