PSIBLAST alignment of GI: 254780127 and protein with PDB id: 1d8y
>gi|6730276|pdb|1D8Y|A Chain A, Crystal Structure Of The Complex Of Dna Polymerase I Klenow Fragment With Dna Length = 605
Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats.
Identities = 104/701 (14%), Positives = 193/701 (27%), Gaps = 171/701 (24%)
Query: 10 TRSPQPLPKVGVWAYAEQAVITLCAYAWDDEPVKLWDRTEQ----------SAMPSDLLQ 59
T S + A + ++A + L
Sbjct: 35 TDSLDNI----------SANLVGLSFAIEPGVAAYIPVAHDYLDAPDQISRERALELLKP 84
Query: 60 YLRDETVMCVAHNSLFERILFKKTLGIDIPSKRWICTSVLARTNGL---PSSLKNACLA- 115
L DE + V N ++R + GI++ + T + + + +
Sbjct: 85 LLEDEKALKVGQNLKYDRGILANY-GIELRGIAF-DTMLESYILNSVAGRHDMDSLAERW 142
Query: 116 LNFSEHLTKMEEGKALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFK 175
L + GK + A + G Y D + T +L
Sbjct: 143 LKHKTITFEEIAGKGKNQL---------------TFNQIALEEAGRYAAEDADVTLQLHL 187
Query: 176 RLIPLSDG-----------ERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDI 224
++ P E L + I G +ID ++ E + +L++
Sbjct: 188 KMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAELEKKA 247
Query: 225 VKLTDGIIRSSRQTYALRMYLFLITGIDLVDMSE----GTLKSILSHSNITQLAKDLILN 280
++ + T L+ LF GI + + T + +L + +IL
Sbjct: 248 HEIAGEEF-NLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLPKVILE 306
Query: 281 RLASSGSAILKLNTLSEAVSS-DGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEI 339
+ + L ++ GR+ + + TGR S QN+P
Sbjct: 307 YRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAV-TATGRLSSTDPNLQNIP-------- 357
Query: 340 LTQTIQALNRGETIADPLGLASDCVRSCIIASNGKKLVVADLAGIEARVLAWIAGEDWKI 399
+R IA +V AD + IE R++A ++ + +
Sbjct: 358 ----------------VRNEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLL 401
Query: 400 KAFANGEDIYVTTYAKAFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDL 459
AFA G+DI+ T A+ F P++ V+ EQR K + G+
Sbjct: 402 TAFAEGKDIHRATAAEVFGLPLETVTSEQRRSAKAINF--------------GLIYGMS- 446
Query: 460 QQFSQNVKSTSTFEDWEQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQ 519
A + + + + ++ GVL+
Sbjct: 447 -----------------------------AFGLARQLNIPRKEAQKYMDLYFERYPGVLE 477
Query: 520 LWKDLTEGFACVVQEGGSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSY 579
+ + RRL D+K
Sbjct: 478 YMERTRAQAKEQGY--------------------------VETLDGRRLYLPDIKSSNGA 511
Query: 580 LNTATSQLMRERTYGGKLTENIVQAISRDILCEGMKNATK------NGYDIVLTVHDEIV 633
A + +Q + DI+ M +++ VHDE+V
Sbjct: 512 RRAAAERAA---------INAPMQGTAADIIKRAMIAVDAWLQAEQPRVRMIMQVHDELV 562
Query: 634 SETPDTPYFSV-GTLCSLMTKNPSWAKGLPLKAEGYEAKRY 673
E +V + LM +PL E + +
Sbjct: 563 FEVHKDDVDAVAKQIHQLMENCTR--LDVPLLVEVGSGENW 601