PSIBLAST alignment of GI: 254780127 and protein with PDB id: 1l3s
>gi|29726371|pdb|1L3S|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Complexed To 9 Base Pairs Of Duplex Dna. Length = 580
>gi|29726374|pdb|1L3T|A Chain A, Crystal Structure Of Bacillus Dna Polymerase I Fragment Product Complex With 10 Base Pairs Of Duplex Dna Following Addition Of A Single Dttp Residue Length = 580
Score = 271 bits (692), Expect = 3e-70, Method: Composition-based stats.
Identities = 77/565 (13%), Positives = 164/565 (29%), Gaps = 128/565 (22%)
Query: 130 ALIARFCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLS-------- 181
+ ++ + + E+ R A EL + +
Sbjct: 119 KMKQYEAVRPDEAVYGKGAKRAVPDE-PVLAEHLVRKAAAIWELERPFLDELRRNEQDRL 177
Query: 182 --DGERDLWLLDQTINDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTY 239
+ E+ L + + G ++D + ++ + +A++ +++ I +L +
Sbjct: 178 LVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYELAGQEF-NINSPK 236
Query: 240 ALRMYLFLITGIDLVDMSE---GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLS 296
L + LF + ++ ++ T +L + IL+ + L
Sbjct: 237 QLGVILFEKLQLPVLKKTKTGYSTSADVLEKLAPYHEIVENILHYRQLGKLQSTYIEGLL 296
Query: 297 EAVSSDGRLRGTLQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADP 356
+ V D + T+ ++TGR S QN+P
Sbjct: 297 KVVRPDTKKVHTIFNQALTQTGRLSSTEPNLQNIP------------------------I 332
Query: 357 LGLASDCVRSCIIASN-GKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAK 415
+R + S + AD + IE RVLA IA +D ++AF DI+ T
Sbjct: 333 RLEEGRKIRQAFVPSESDWLIFAADYSQIELRVLAHIAEDDNLMEAFRRDLDIHTKTAMD 392
Query: 416 AFNTPIDKVSKEQRAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDW 475
F D+V+ R K + G+ +QN
Sbjct: 393 IFQVSEDEVTPNMRRQAKAVNF--------------GIVYGISDYGLAQN---------- 428
Query: 476 EQAESHHLWMQDQYPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEG 535
+ + + GV + +++ +
Sbjct: 429 --------------------LNISRKEAAEFIERYFESFPGVKRYMENIVQEAKQKGYVT 468
Query: 536 GSISARRVANVPRLVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGG 595
+ RR D+ + + ++
Sbjct: 469 TLLH--------------------------RRRYLPDITSRNFNVRSFAERM-------- 494
Query: 596 KLTENIVQAISRDILCEGMKNA------TKNGYDIVLTVHDEIVSETPDTPYFSVGTLC- 648
+Q + DI+ + M + + ++L VHDE++ E P + L
Sbjct: 495 -AMNTPIQGSAADIIKKAMIDLNARLKEERLQAHLLLQVHDELILEAPKEEMERLCRLVP 553
Query: 649 SLMTKNPSWAKGLPLKAEGYEAKRY 673
+M + + +PLK + + +
Sbjct: 554 EVMEQAVT--LRVPLKVDYHYGSTW 576