PSIBLAST alignment of GI: 254780127 and protein with PDB id: 4ktq
>gi|6730042|pdb|4KTQ|A Chain A, Binary Complex Of The Large Fragment Of Dna Polymerase I From T. Aquaticus Bound To A PrimerTEMPLATE DNA Length = 539
Score = 267 bits (683), Expect = 4e-69, Method: Composition-based stats.
Identities = 84/606 (13%), Positives = 156/606 (25%), Gaps = 141/606 (23%)
Query: 76 ERILFKKTLGIDIPSKRWICTSVLARTNGLPSSL-KNACLALNFSEHLTKMEEGKALIAR 134
+ + G+ +P +LA ++ +
Sbjct: 62 DLSVLALREGLGLPPG--DDPMLLAYLLDPSNTTPEGVARRYG----------------- 102
Query: 135 FCKGSIDSPPYDCTRANHVQAWQLFGEYCKRDVEATRELFKRLIPLSDGERDLWLLDQTI 194
+ T +A + E + L + ER L + +
Sbjct: 103 ----------GEWTEEAGERAALSERLFANLWGRLEGE-ERLLWLYREVERPLSAVLAHM 151
Query: 195 NDRGYRIDLDLVLKLQELIAQERKKLDEDIVKLTDGIIRSSRQTYALRMYLFLITGID-- 252
G R+D+ + L +A+E +L+ ++ +L + L LF G+
Sbjct: 152 EATGVRLDVAYLRALSLEVAEEIARLEAEVFRLAGHPF-NLNSRDQLERVLFDELGLPAI 210
Query: 253 --LVDMSE-GTLKSILSHSNITQLAKDLILNRLASSGSAILKLNTLSEAVSS-DGRLRGT 308
+ T ++L + IL + ++ L + + GRL
Sbjct: 211 GKTEKTGKRSTSAAVLEALREAHPIVEKILQYRELTKLKSTYIDPLPDLIHPRTGRLHTR 270
Query: 309 LQFYGASRTGRWSGCVFQPQNLPRQERSEEILTQTIQALNRGETIADPLGLASDCVRSCI 368
A+ TGR S QN+P +R
Sbjct: 271 FNQT-ATATGRLSSSDPNLQNIP------------------------VRTPLGQRIRRAF 305
Query: 369 IASNGKKLVVADLAGIEARVLAWIAGEDWKIKAFANGEDIYVTTYAKAFNTPIDKVSKEQ 428
IA G LV D + IE RVLA ++G++ I+ F G DI+ T + F P + V
Sbjct: 306 IAEEGWLLVALDYSQIELRVLAHLSGDENLIRVFQEGRDIHTETASWMFGVPREAVDPLM 365
Query: 429 RAIGKVMELALGYQGGAKVFKTMASHCGLDLQQFSQNVKSTSTFEDWEQAESHHLWMQDQ 488
R K + + Y A L + F+ + + + ++
Sbjct: 366 RRAAKTINFGVLYGMSAHRLSQE-----LAIPYEEAQAFIERYFQSFPKVRAWIEKTLEE 420
Query: 489 YPEFAVKDKLIGTACELVKKAWRAKHQGVLQLWKDLTEGFACVVQEGGSISARRVANVPR 548
+ L G R + K + E +
Sbjct: 421 GRRRGYVETLFGR---------RRYVPDLEARVKSVREAAERMAFNMPVQGTAADL---- 467
Query: 549 LVMRRHKRDVHIVLPSSRRLVYSDVKGDCSYLNTATSQLMRERTYGGKLTENIVQAISRD 608
+L + +
Sbjct: 468 -----------------MKLAMVKLFPRLEEMG--------------------------- 483
Query: 609 ILCEGMKNATKNGYDIVLTVHDEIVSETPDTPYFSVGTL-CSLMTKNPSWAKGLPLKAEG 667
+ +V E P +V L +M A +PL+ E
Sbjct: 484 --ARMLLQVHDE-----------LVLEAPKERAEAVARLAKEVMEGVYPLA--VPLEVEV 528
Query: 668 YEAKRY 673
+ +
Sbjct: 529 GIGEDW 534